# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: GALA_LRR.VB.hmm # target sequence database: ../uniprot_sprot.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: GALA_LRR [M=24] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-08 37.3 10.6 1.5 14.0 0.2 7.2 5 sp|Q53B88|NOD2_HYLLA Nucleotide-binding oligomerization dom 5.9e-07 34.1 98.0 9.4 11.5 2.1 18.8 13 sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 1.8e-05 29.4 9.9 1.5 14.0 0.2 6.3 5 sp|Q9HC29|NOD2_HUMAN Nucleotide-binding oligomerization dom 3.7e-05 28.5 36.2 13 11.0 0.2 11.1 9 sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa G 5.6e-05 27.9 12.0 1.5 14.0 0.2 6.8 5 sp|Q53B87|NOD2_PANTR Nucleotide-binding oligomerization dom 0.00022 26.0 13.5 37 9.6 0.0 9.4 7 sp|C3VPR6|NLRC5_MOUSE Protein NLRC5 OS=Mus musculus GN=Nlrc5 0.00071 24.4 0.2 3.2 13.0 0.0 3.2 3 sp|Q8IY45|AMN1_HUMAN Protein AMN1 homolog OS=Homo sapiens G 0.00075 24.4 0.2 3.2 13.0 0.0 3.1 3 sp|Q5R8X9|AMN1_PONAB Protein AMN1 homolog OS=Pongo abelii G 0.00084 24.2 1.2 3.9 12.7 0.0 4.6 3 sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabid 0.00088 24.1 26.0 4.5 12.5 0.5 8.1 8 sp|Q6E804|NOD2_BOVIN Nucleotide-binding oligomerization dom 0.0022 22.9 19.2 7.9 11.7 0.0 8.9 5 sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 0.0035 22.3 3.4 4.7 12.4 0.0 5.1 2 sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidop 0.0067 21.4 8.0 21 10.4 0.0 5.4 3 sp|Q9H469|FXL15_HUMAN F-box/LRR-repeat protein 15 OS=Homo sa 0.0075 21.2 8.6 30 9.9 0.1 5.2 4 sp|Q8N4P6|LRC71_HUMAN Leucine-rich repeat-containing protein ------ inclusion threshold ------ 0.015 20.3 9.1 6.1 12.1 0.0 4.9 2 sp|E2RKN7|FXL15_CANFA F-box/LRR-repeat protein 15 OS=Canis f 0.017 20.1 16.3 3.5e+02 6.6 0.3 7.9 8 sp|Q8K3Z0|NOD2_MOUSE Nucleotide-binding oligomerization dom 0.017 20.1 6.9 25 10.2 0.0 5.2 3 sp|D4ABB4|FXL15_RAT F-box/LRR-repeat protein 15 OS=Rattus 0.018 20.0 3.7 1.7e+02 7.5 1.0 6.5 2 sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization dom 0.02 19.9 74.6 40 9.5 1.1 15.7 11 sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 0.024 19.6 0.0 54 9.1 0.0 3.7 3 sp|Q5U201|AMN1_RAT Protein AMN1 homolog OS=Rattus norvegi 0.032 19.3 8.3 25 10.2 0.0 5.4 3 sp|Q91W61|FXL15_MOUSE F-box/LRR-repeat protein 15 OS=Mus mus 0.056 18.5 13.0 17 10.7 0.6 6.7 4 sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization dom 0.066 18.3 29.6 1.4e+02 7.8 0.3 9.3 7 sp|Q8HZP9|RINI_PANTR Ribonuclease inhibitor OS=Pan troglody 0.072 18.1 8.5 42 9.5 0.0 5.3 3 sp|E1BNS0|FXL15_BOVIN F-box/LRR-repeat protein 15 OS=Bos tau 0.12 17.4 3.0 1.5e+02 7.7 0.0 5.2 3 sp|Q4V8D9|LRC34_RAT Leucine-rich repeat-containing protein 0.12 17.4 35.0 14 10.9 0.1 8.8 7 sp|Q6ZQY2|YV012_HUMAN Leucine-rich repeat-containing protein 0.13 17.3 0.2 37 9.6 0.0 3.7 3 sp|Q32L08|AMN1_BOVIN Protein AMN1 homolog OS=Bos taurus GN= 0.14 17.2 30.6 1.4e+02 7.8 0.3 9.2 7 sp|P13489|RINI_HUMAN Ribonuclease inhibitor OS=Homo sapiens 0.39 15.8 20.2 1.5 14.0 0.4 6.5 4 sp|Q3V3V9|LR16C_MOUSE Leucine-rich repeat-containing protein 0.39 15.8 0.0 18 10.6 0.0 3.5 3 sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musc 0.42 15.7 0.0 4.5 12.5 0.0 2.9 1 sp|Q9SN10|FBL16_ARATH F-box/LRR-repeat protein 16 OS=Arabido 0.46 15.6 0.6 2.3e+03 4.0 0.2 5.7 5 sp|Q8IZ02|LRC34_HUMAN Leucine-rich repeat-containing protein 0.54 15.4 5.1 7.5e+02 5.5 0.0 5.7 5 sp|Q9DAM1|LRC34_MOUSE Leucine-rich repeat-containing protein 0.55 15.4 12.0 1e+03 5.1 0.0 7.1 6 sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabid 0.56 15.3 15.6 7.5e+02 5.5 0.1 8.8 8 sp|P29315|RINI_RAT Ribonuclease inhibitor OS=Rattus norve 0.6 15.3 6.7 97 8.3 0.1 6.1 5 sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos tau 0.6 15.3 6.7 97 8.3 0.1 6.1 5 sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus mus 0.62 15.2 0.3 8.8e+02 5.3 0.0 3.9 3 sp|Q9FE83|SKIP2_ARATH F-box protein SKIP2 OS=Arabidopsis tha 0.63 15.2 20.5 1.5e+03 4.6 0.4 9.1 7 sp|Q91VI7|RINI_MOUSE Ribonuclease inhibitor OS=Mus musculus 0.8 14.9 6.7 1e+02 8.2 0.1 6.0 4 sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sa 1 14.5 4.6 24 10.2 0.5 3.5 3 sp|Q4UNE4|Y063_RICFE Putative ankyrin repeat protein RF_006 1.3 14.2 0.2 4.2 12.6 0.2 1.9 1 sp|Q7MX82|HUTI_PORGI Imidazolonepropionase OS=Porphyromonas 1.3 14.2 29.0 1.9e+02 7.4 0.0 9.2 7 sp|Q14BP6|YV012_MOUSE Leucine-rich repeat-containing protein 1.4 14.1 0.2 4.2 12.6 0.2 1.8 1 sp|B2RLA8|HUTI_PORG3 Imidazolonepropionase OS=Porphyromonas 1.7 13.9 0.0 18 10.6 0.0 2.9 1 sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sap 1.9 13.6 7.3 3e+02 6.8 0.0 4.3 2 sp|Q5JTW2|CEP78_HUMAN Centrosomal protein of 78 kDa OS=Homo 2 13.6 0.2 7.8 11.8 0.1 2.1 2 sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stre 2.1 13.5 10.2 1.2e+02 8.0 0.0 5.3 3 sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis 3.4 12.9 0.2 64 8.9 0.0 3.2 1 sp|Q0P4D1|AMN1_DANRE Protein AMN1 homolog OS=Danio rerio GN 3.5 12.9 8.8 5e+03 2.9 0.0 6.1 5 sp|P17053|G168_PARPR G surface protein, allelic form 168 OS 4 12.7 0.2 12 11.2 0.1 1.9 1 sp|Q0C5F9|RLMH_HYPNA Ribosomal RNA large subunit methyltran 4 12.6 0.0 1.9e+02 7.4 0.1 3.7 2 sp|Q95VZ3|CARML_DICDI Protein CARMIL OS=Dictyostelium discoi 5.8 12.2 10.1 1.9e+02 7.4 0.0 4.9 3 sp|Q6IRU7|CEP78_MOUSE Centrosomal protein of 78 kDa OS=Mus m 6 12.1 0.2 8e+02 5.4 0.1 3.2 2 sp|Q7RTR0|NALP9_HUMAN NACHT, LRR and PYD domains-containing 6 12.1 0.7 95 8.3 0.0 2.7 2 sp|B2SCY7|SYH_BRUA1 Histidine--tRNA ligase OS=Brucella abo 6 12.1 0.7 95 8.3 0.0 2.7 2 sp|Q2YIH9|SYH_BRUA2 Histidine--tRNA ligase OS=Brucella abo 6 12.1 0.7 95 8.3 0.0 2.7 2 sp|Q579Q8|SYH_BRUAB Histidine--tRNA ligase OS=Brucella abo 6.1 12.1 0.7 95 8.3 0.0 2.7 2 sp|A5VTT4|SYH_BRUO2 Histidine--tRNA ligase OS=Brucella ovi 6.1 12.1 0.7 95 8.3 0.0 2.7 2 sp|C0RKC7|SYH_BRUMB Histidine--tRNA ligase OS=Brucella mel 6.1 12.1 0.7 95 8.3 0.0 2.7 2 sp|Q8YB45|SYH_BRUME Histidine--tRNA ligase OS=Brucella mel 6.1 12.1 0.7 95 8.3 0.0 2.7 2 sp|A9WXP3|SYH_BRUSI Histidine--tRNA ligase OS=Brucella sui 6.1 12.1 6.1 77 8.6 0.1 3.1 2 sp|Q98KP0|COBS_RHILO Cobalamin synthase OS=Rhizobium loti ( 7.8 11.7 9.3 1.5e+03 4.6 0.0 4.6 4 sp|Q9D3W5|LRC71_MOUSE Leucine-rich repeat-containing protein 8.7 11.6 2.3 6.4e+02 5.7 0.0 4.0 2 sp|P33076|C2TA_HUMAN MHC class II transactivator OS=Homo sa Domain annotation for each sequence (and alignments): >> sp|Q53B88|NOD2_HYLLA Nucleotide-binding oligomerization domain-containing protein 2 OS=Hylobates lar GN=NOD2 PE=3 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 2.7 2.2e+04 1 11 [. 823 833 .. 823 835 .. 0.85 2 ! 10.1 0.0 0.0032 27 1 15 [. 879 893 .. 879 894 .. 0.93 3 ! 14.0 0.2 0.00018 1.5 2 15 .. 908 921 .. 907 922 .. 0.93 4 ? 0.9 0.0 2.6 2.2e+04 10 24 .] 920 934 .. 920 934 .. 0.92 5 ! 11.2 0.1 0.0014 11 2 14 .. 936 948 .. 935 960 .. 0.94 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 2.7 GALA_LRR 1 snNaIGdaGAr 11 ++N+I+d+G++ sp|Q53B88|NOD2_HYLLA 823 RDNNISDRGIC 833 689******86 PP == domain 2 score: 10.1 bits; conditional E-value: 0.0032 GALA_LRR 1 snNaIGdaGArALAa 15 +nN I++aGA+ LA+ sp|Q53B88|NOD2_HYLLA 879 GNNHITPAGAQVLAE 893 69***********96 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00018 GALA_LRR 2 nNaIGdaGArALAa 15 +N++Gd+GA+ALA+ sp|Q53B88|NOD2_HYLLA 908 GNRVGDEGAQALAE 921 69***********6 PP == domain 4 score: 0.9 bits; conditional E-value: 2.6 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+AL ++ sL+ L+l sp|Q53B88|NOD2_HYLLA 920 AEALGDHQSLRWLSL 934 89**********986 PP == domain 5 score: 11.2 bits; conditional E-value: 0.0014 GALA_LRR 2 nNaIGdaGArALA 14 +N+IG+ GA+ALA sp|Q53B88|NOD2_HYLLA 936 GNNIGSVGAQALA 948 699*********9 PP >> sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 1.7 0.012 1e+02 3 24 .] 676 701 .. 674 701 .. 0.80 2 ! 9.2 2.9 0.0062 52 1 23 [. 702 728 .. 702 729 .. 0.73 3 ? 5.4 0.2 0.095 8e+02 10 19 .. 743 752 .. 741 757 .. 0.89 4 ! 10.2 0.4 0.0028 23 1 15 [. 786 800 .. 786 803 .. 0.91 5 ? 0.1 0.0 4.8 4.1e+04 10 24 .] 799 813 .. 799 813 .. 0.89 6 ? 6.1 0.1 0.059 5e+02 3 13 .. 816 826 .. 815 826 .. 0.92 7 ? 5.2 0.0 0.11 9.5e+02 3 14 .. 844 855 .. 842 856 .. 0.89 8 ? 4.0 1.6 0.26 2.2e+03 15 24 .] 888 897 .. 871 897 .. 0.69 9 ? 6.7 0.5 0.037 3.2e+02 12 24 .] 913 925 .. 912 925 .. 0.83 10 ? -0.7 4.8 8.3 7e+04 3 12 .. 928 937 .. 927 953 .. 0.82 11 ? 1.9 0.8 1.3 1.1e+04 11 24 .] 968 981 .. 956 981 .. 0.80 12 ! 11.5 2.1 0.0011 9.4 1 15 [. 982 996 .. 982 997 .. 0.93 13 ? 5.0 0.0 0.13 1.1e+03 2 12 .. 1039 1049 .. 1038 1052 .. 0.88 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.012 GALA_LRR 3 NaIGdaGArALAaN....tsLtSLdl 24 N I++ GA+ALA++ +sLtSLdl sp|Q7RTR2|NLRC3_HUMAN 676 NQISNKGAKALARSllvnRSLTSLDL 701 78999999999977666689999987 PP == domain 2 score: 9.2 bits; conditional E-value: 0.0062 GALA_LRR 1 snNaIGdaGArALA....aNtsLtSLd 23 ++N IG+ GA+ALA N++LtSL+ sp|Q7RTR2|NLRC3_HUMAN 702 RGNSIGPQGAKALAdalkINRTLTSLS 728 68************5553356666665 PP == domain 3 score: 5.4 bits; conditional E-value: 0.095 GALA_LRR 10 ArALAaNtsL 19 A+ALA+N++L sp|Q7RTR2|NLRC3_HUMAN 743 AEALASNRTL 752 99*******9 PP == domain 4 score: 10.2 bits; conditional E-value: 0.0028 GALA_LRR 1 snNaIGdaGArALAa 15 s N IGd GA+ALA+ sp|Q7RTR2|NLRC3_HUMAN 786 SSNSIGDGGAKALAE 800 569***********6 PP == domain 5 score: 0.1 bits; conditional E-value: 4.8 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+AL N L SLdl sp|Q7RTR2|NLRC3_HUMAN 799 AEALKVNQGLESLDL 813 7889999*******7 PP == domain 6 score: 6.1 bits; conditional E-value: 0.059 GALA_LRR 3 NaIGdaGArAL 13 N I+daG++AL sp|Q7RTR2|NLRC3_HUMAN 816 NSISDAGVAAL 826 89********9 PP == domain 7 score: 5.2 bits; conditional E-value: 0.11 GALA_LRR 3 NaIGdaGArALA 14 N I+++GA+A A sp|Q7RTR2|NLRC3_HUMAN 844 NSISPEGAQAIA 855 99********87 PP == domain 8 score: 4.0 bits; conditional E-value: 0.26 GALA_LRR 15 aNtsLtSLdl 24 +N++LtSL+l sp|Q7RTR2|NLRC3_HUMAN 888 ENRTLTSLHL 897 4*******97 PP == domain 9 score: 6.7 bits; conditional E-value: 0.037 GALA_LRR 12 ALAaNtsLtSLdl 24 AL N+sLtSLdl sp|Q7RTR2|NLRC3_HUMAN 913 ALQLNRSLTSLDL 925 6667********8 PP == domain 10 score: -0.7 bits; conditional E-value: 8.3 GALA_LRR 3 NaIGdaGArA 12 NaIGd+GA+A sp|Q7RTR2|NLRC3_HUMAN 928 NAIGDDGACA 937 8999999987 PP == domain 11 score: 1.9 bits; conditional E-value: 1.3 GALA_LRR 11 rALAaNtsLtSLdl 24 +ALA N++L Ldl sp|Q7RTR2|NLRC3_HUMAN 968 EALAVNRTLEILDL 981 48999999988876 PP == domain 12 score: 11.5 bits; conditional E-value: 0.0011 GALA_LRR 1 snNaIGdaGArALAa 15 ++NaIG aGA+ALA+ sp|Q7RTR2|NLRC3_HUMAN 982 RGNAIGVAGAKALAN 996 68************6 PP == domain 13 score: 5.0 bits; conditional E-value: 0.13 GALA_LRR 2 nNaIGdaGArA 12 +N IGd GAr+ sp|Q7RTR2|NLRC3_HUMAN 1039 GNHIGDSGARM 1049 69*******97 PP >> sp|Q9HC29|NOD2_HUMAN Nucleotide-binding oligomerization domain-containing protein 2 OS=Homo sapiens GN=NOD2 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 2.7 2.2e+04 1 11 [. 823 833 .. 823 835 .. 0.85 2 ? 3.4 0.1 0.43 3.6e+03 2 15 .. 880 893 .. 879 894 .. 0.85 3 ! 14.0 0.2 0.00018 1.5 2 15 .. 908 921 .. 907 922 .. 0.93 4 ? 0.9 0.0 2.6 2.2e+04 10 24 .] 920 934 .. 920 934 .. 0.92 5 ! 11.2 0.1 0.0014 11 2 14 .. 936 948 .. 935 960 .. 0.94 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 2.7 GALA_LRR 1 snNaIGdaGAr 11 ++N+I+d+G++ sp|Q9HC29|NOD2_HUMAN 823 RDNNISDRGIC 833 689******86 PP == domain 2 score: 3.4 bits; conditional E-value: 0.43 GALA_LRR 2 nNaIGdaGArALAa 15 nN I++aGA+ LA+ sp|Q9HC29|NOD2_HUMAN 880 NNYITAAGAQVLAE 893 5669********96 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00018 GALA_LRR 2 nNaIGdaGArALAa 15 +N++Gd+GA+ALA+ sp|Q9HC29|NOD2_HUMAN 908 GNRVGDEGAQALAE 921 69***********6 PP == domain 4 score: 0.9 bits; conditional E-value: 2.6 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+AL ++ sL+ L+l sp|Q9HC29|NOD2_HUMAN 920 AEALGDHQSLRWLSL 934 89**********986 PP == domain 5 score: 11.2 bits; conditional E-value: 0.0014 GALA_LRR 2 nNaIGdaGArALA 14 +N+IG+ GA+ALA sp|Q9HC29|NOD2_HUMAN 936 GNNIGSVGAQALA 948 699*********9 PP >> sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.2 0.37 3.1e+03 12 22 .. 46 56 .. 45 58 .. 0.87 2 ? 0.5 0.0 3.4 2.9e+04 2 10 .. 60 68 .. 59 68 .. 0.86 3 ? 5.0 0.0 0.13 1.1e+03 1 13 [. 116 128 .. 116 128 .. 0.93 4 ! 11.0 0.2 0.0016 13 1 13 [. 173 185 .. 173 187 .. 0.91 5 ? 5.0 0.4 0.13 1.1e+03 2 13 .. 231 242 .. 230 242 .. 0.88 6 ? 7.1 0.1 0.028 2.3e+02 2 13 .. 288 299 .. 287 299 .. 0.92 7 ? 2.1 0.0 1.1 9.5e+03 1 13 [. 344 356 .. 344 356 .. 0.88 8 ? 5.8 0.7 0.073 6.1e+02 11 24 .] 387 400 .. 379 400 .. 0.86 9 ? 5.2 0.0 0.11 9.5e+02 1 16 [. 401 416 .. 401 417 .. 0.88 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.37 GALA_LRR 12 ALAaNtsLtSL 22 AL aN+sLt L sp|P10775|RINI_PIG 46 ALRANPSLTEL 56 7889*****99 PP == domain 2 score: 0.5 bits; conditional E-value: 3.4 GALA_LRR 2 nNaIGdaGA 10 N++GdaG+ sp|P10775|RINI_PIG 60 TNELGDAGV 68 599*****7 PP == domain 3 score: 5.0 bits; conditional E-value: 0.13 GALA_LRR 1 snNaIGdaGArAL 13 s+N +GdaG r+L sp|P10775|RINI_PIG 116 SDNPLGDAGLRLL 128 789********98 PP == domain 4 score: 11.0 bits; conditional E-value: 0.0016 GALA_LRR 1 snNaIGdaGArAL 13 snN IG+aGAr L sp|P10775|RINI_PIG 173 SNNDIGEAGARVL 185 89*********88 PP == domain 5 score: 5.0 bits; conditional E-value: 0.13 GALA_LRR 2 nNaIGdaGArAL 13 N++GdaG++ L sp|P10775|RINI_PIG 231 SNGLGDAGIAEL 242 59*******987 PP == domain 6 score: 7.1 bits; conditional E-value: 0.028 GALA_LRR 2 nNaIGdaGArAL 13 +N +Gd+GAr+L sp|P10775|RINI_PIG 288 GNKLGDEGARLL 299 79********98 PP == domain 7 score: 2.1 bits; conditional E-value: 1.1 GALA_LRR 1 snNaIGdaGArAL 13 s N +Gd G++ L sp|P10775|RINI_PIG 344 SSNKLGDSGIQEL 356 569********87 PP == domain 8 score: 5.8 bits; conditional E-value: 0.073 GALA_LRR 11 rALAaNtsLtSLdl 24 +L aN+sL+ Ldl sp|P10775|RINI_PIG 387 SLLLANRSLRELDL 400 578888*******7 PP == domain 9 score: 5.2 bits; conditional E-value: 0.11 GALA_LRR 1 snNaIGdaGArALAaN 16 snN++Gd G+ L ++ sp|P10775|RINI_PIG 401 SNNCVGDPGVLQLLGS 416 89********999765 PP >> sp|Q53B87|NOD2_PANTR Nucleotide-binding oligomerization domain-containing protein 2 OS=Pan troglodytes GN=NOD2 PE=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 2.7 2.2e+04 1 11 [. 823 833 .. 823 835 .. 0.85 2 ? 3.1 0.1 0.51 4.3e+03 2 14 .. 880 892 .. 879 902 .. 0.88 3 ! 14.0 0.2 0.00018 1.5 2 15 .. 908 921 .. 907 922 .. 0.93 4 ? 0.9 0.0 2.6 2.2e+04 10 24 .] 920 934 .. 920 934 .. 0.92 5 ! 11.2 0.1 0.0014 11 2 14 .. 936 948 .. 935 960 .. 0.94 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 2.7 GALA_LRR 1 snNaIGdaGAr 11 ++N+I+d+G++ sp|Q53B87|NOD2_PANTR 823 RDNNISDRGIC 833 689******86 PP == domain 2 score: 3.1 bits; conditional E-value: 0.51 GALA_LRR 2 nNaIGdaGArALA 14 nN I++aGA+ LA sp|Q53B87|NOD2_PANTR 880 NNYITAAGAQVLA 892 56699*******9 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00018 GALA_LRR 2 nNaIGdaGArALAa 15 +N++Gd+GA+ALA+ sp|Q53B87|NOD2_PANTR 908 GNRVGDEGAQALAE 921 69***********6 PP == domain 4 score: 0.9 bits; conditional E-value: 2.6 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+AL ++ sL+ L+l sp|Q53B87|NOD2_PANTR 920 AEALGDHQSLRWLSL 934 89**********986 PP == domain 5 score: 11.2 bits; conditional E-value: 0.0014 GALA_LRR 2 nNaIGdaGArALA 14 +N+IG+ GA+ALA sp|Q53B87|NOD2_PANTR 936 GNNIGSVGAQALA 948 699*********9 PP >> sp|C3VPR6|NLRC5_MOUSE Protein NLRC5 OS=Mus musculus GN=Nlrc5 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 2.3 1.9e+04 1 15 [. 1584 1598 .. 1584 1599 .. 0.84 2 ? 1.1 0.0 2.3 1.9e+04 1 15 [. 1612 1626 .. 1612 1627 .. 0.84 3 ? 1.2 0.0 2.2 1.8e+04 1 15 [. 1668 1682 .. 1668 1683 .. 0.83 4 ? 3.1 0.0 0.54 4.5e+03 1 9 [. 1696 1704 .. 1696 1713 .. 0.82 5 ! 9.6 0.0 0.0044 37 3 19 .. 1804 1820 .. 1803 1820 .. 0.94 6 ? 0.4 0.1 3.9 3.3e+04 1 14 [. 1830 1843 .. 1830 1844 .. 0.93 7 ? 6.8 0.0 0.034 2.8e+02 3 14 .. 1860 1871 .. 1859 1873 .. 0.93 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 2.3 GALA_LRR 1 snNaIGdaGArALAa 15 s+N IGd G + LAa sp|C3VPR6|NLRC5_MOUSE 1584 SHNQIGDVGTQCLAA 1598 78*******996665 PP == domain 2 score: 1.1 bits; conditional E-value: 2.3 GALA_LRR 1 snNaIGdaGArALAa 15 s+N IGd G + LAa sp|C3VPR6|NLRC5_MOUSE 1612 SHNQIGDVGTQCLAA 1626 78*******996665 PP == domain 3 score: 1.2 bits; conditional E-value: 2.2 GALA_LRR 1 snNaIGdaGArALAa 15 s+N IGd G + LAa sp|C3VPR6|NLRC5_MOUSE 1668 SRNQIGDVGTQCLAA 1682 679******996665 PP == domain 4 score: 3.1 bits; conditional E-value: 0.54 GALA_LRR 1 snNaIGdaG 9 s+N+IG+aG sp|C3VPR6|NLRC5_MOUSE 1696 SGNRIGPAG 1704 79******9 PP == domain 5 score: 9.6 bits; conditional E-value: 0.0044 GALA_LRR 3 NaIGdaGArALAaNtsL 19 + I d +Ar+LAaN +L sp|C3VPR6|NLRC5_MOUSE 1804 CKIEDQAARHLAANLTL 1820 789***********998 PP == domain 6 score: 0.4 bits; conditional E-value: 3.9 GALA_LRR 1 snNaIGdaGArALA 14 s+N +Gd+ A+ LA sp|C3VPR6|NLRC5_MOUSE 1830 SGNLLGDEVAAELA 1843 79***********9 PP == domain 7 score: 6.8 bits; conditional E-value: 0.034 GALA_LRR 3 NaIGdaGArALA 14 N+I+++GA++LA sp|C3VPR6|NLRC5_MOUSE 1860 NRITARGAQLLA 1871 9**********9 PP >> sp|Q8IY45|AMN1_HUMAN Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 0.00038 3.2 2 24 .] 70 92 .. 69 92 .. 0.94 2 ? 7.8 0.0 0.017 1.4e+02 1 16 [. 124 139 .. 124 139 .. 0.92 3 ? -0.8 0.0 9.4 7.9e+04 3 14 .. 177 188 .. 175 196 .. 0.80 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.00038 GALA_LRR 2 nNaIGdaGArALAaNtsLtSLdl 24 + I+da+ +L++++ L+ L+l sp|Q8IY45|AMN1_HUMAN 70 SCDISDAALLHLSNCRKLKKLNL 92 699******************97 PP == domain 2 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 1 snNaIGdaGArALAaN 16 ++++++d+G+ ALA N sp|Q8IY45|AMN1_HUMAN 124 RCCNLTDEGVVALALN 139 5799**********98 PP == domain 3 score: -0.8 bits; conditional E-value: 9.4 GALA_LRR 3 NaIGdaGArALA 14 ++d G+ AL sp|Q8IY45|AMN1_HUMAN 177 TQVSDSGVIALV 188 57899***9996 PP >> sp|Q5R8X9|AMN1_PONAB Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 0.00038 3.2 2 24 .] 70 92 .. 69 92 .. 0.94 2 ? 7.8 0.0 0.017 1.4e+02 1 16 [. 124 139 .. 124 139 .. 0.92 3 ? -0.8 0.0 9.4 7.9e+04 3 14 .. 177 188 .. 175 196 .. 0.80 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.00038 GALA_LRR 2 nNaIGdaGArALAaNtsLtSLdl 24 + I+da+ +L++++ L+ L+l sp|Q5R8X9|AMN1_PONAB 70 SCDISDAALLHLSNCRKLKKLNL 92 699******************97 PP == domain 2 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 1 snNaIGdaGArALAaN 16 ++++++d+G+ ALA N sp|Q5R8X9|AMN1_PONAB 124 RCCNLTDEGVVALALN 139 5799**********98 PP == domain 3 score: -0.8 bits; conditional E-value: 9.4 GALA_LRR 3 NaIGdaGArALA 14 ++d G+ AL sp|Q5R8X9|AMN1_PONAB 177 TQVSDSGVIALV 188 57899***9996 PP >> sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 6.2 5.2e+04 3 24 .] 214 236 .. 212 236 .. 0.83 2 ? 5.9 0.0 0.068 5.7e+02 2 16 .. 239 253 .. 238 259 .. 0.90 3 ! 12.7 0.0 0.00046 3.9 3 19 .. 554 570 .. 552 571 .. 0.87 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 6.2 GALA_LRR 3 NaIGdaGArALAa.NtsLtSLdl 24 I+d G A A ++ Lt L l sp|Q9SKK0|EBF1_ARATH 214 STITDKGLVAIAKsCPNLTELTL 236 569999*9999999999999875 PP == domain 2 score: 5.9 bits; conditional E-value: 0.068 GALA_LRR 2 nNaIGdaGArALAaN 16 + +IGd+G A A++ sp|Q9SKK0|EBF1_ARATH 239 CSRIGDEGLLAIARS 253 579*********996 PP == domain 3 score: 12.7 bits; conditional E-value: 0.00046 GALA_LRR 3 NaIGdaGArALAaNtsL 19 +aI+d G++ALA++ L sp|Q9SKK0|EBF1_ARATH 554 CAISDSGIQALASSDKL 570 9************9766 PP >> sp|Q6E804|NOD2_BOVIN Nucleotide-binding oligomerization domain-containing protein 2 OS=Bos taurus GN=NOD2 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 0.1 5.8 4.9e+04 3 14 .. 745 756 .. 744 756 .. 0.94 2 ? 1.8 0.0 1.3 1.1e+04 1 13 [. 796 808 .. 796 812 .. 0.82 3 ? 6.5 0.3 0.043 3.6e+02 1 14 [. 852 865 .. 852 867 .. 0.92 4 ! 12.5 0.5 0.00053 4.5 2 15 .. 881 894 .. 880 896 .. 0.93 5 ? 1.8 0.1 1.3 1.1e+04 10 24 .] 893 907 .. 893 907 .. 0.93 6 ! 11.1 0.1 0.0015 13 2 14 .. 909 921 .. 908 923 .. 0.92 7 ? -0.1 0.1 5.4 4.5e+04 10 24 .] 949 963 .. 949 963 .. 0.85 8 ? 3.4 0.1 0.42 3.6e+03 1 14 [. 964 977 .. 964 979 .. 0.91 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 5.8 GALA_LRR 3 NaIGdaGArALA 14 +++G+a +ALA sp|Q6E804|NOD2_BOVIN 745 CGVGPAECAALA 756 89*********9 PP == domain 2 score: 1.8 bits; conditional E-value: 1.3 GALA_LRR 1 snNaIGdaGArAL 13 ++N+I+d+G++ L sp|Q6E804|NOD2_BOVIN 796 RDNNISDRGICKL 808 689******9876 PP == domain 3 score: 6.5 bits; conditional E-value: 0.043 GALA_LRR 1 snNaIGdaGArALA 14 +nN I++aGA+ LA sp|Q6E804|NOD2_BOVIN 852 GNNHITAAGAEVLA 865 69***********9 PP == domain 4 score: 12.5 bits; conditional E-value: 0.00053 GALA_LRR 2 nNaIGdaGArALAa 15 +N +Gd+GA+ALAa sp|Q6E804|NOD2_BOVIN 881 GNQVGDEGAQALAA 894 69***********8 PP == domain 5 score: 1.8 bits; conditional E-value: 1.3 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+AL ++ sL+ L+l sp|Q6E804|NOD2_BOVIN 893 AAALGDHQSLRWLSL 907 89**********986 PP == domain 6 score: 11.1 bits; conditional E-value: 0.0015 GALA_LRR 2 nNaIGdaGArALA 14 +N+IG+ GA+ALA sp|Q6E804|NOD2_BOVIN 909 GNNIGSVGAQALA 921 699*********9 PP == domain 7 score: -0.1 bits; conditional E-value: 5.4 GALA_LRR 10 ArALAaNtsLtSLdl 24 A+ LA+N sL+ L l sp|Q6E804|NOD2_BOVIN 949 AKGLARNSSLKVLKL 963 5669*******9976 PP == domain 8 score: 3.4 bits; conditional E-value: 0.42 GALA_LRR 1 snNaIGdaGArALA 14 snN I++ GA+AL sp|Q6E804|NOD2_BOVIN 964 SNNHISSLGAEALL 977 89**********96 PP >> sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.9 0.014 1.2e+02 1 14 [. 1012 1025 .. 1012 1026 .. 0.94 2 ? 2.7 0.1 0.7 5.9e+03 2 15 .. 1587 1600 .. 1586 1613 .. 0.82 3 ! 11.7 0.0 0.00094 7.9 1 15 [. 1614 1628 .. 1614 1630 .. 0.93 4 ? 1.9 0.1 1.3 1.1e+04 1 19 [. 1642 1660 .. 1642 1660 .. 0.89 5 ? 2.7 0.1 0.68 5.8e+03 2 14 .. 1777 1789 .. 1776 1790 .. 0.88 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.014 GALA_LRR 1 snNaIGdaGArALA 14 s+Na+Gd+GA+ LA sp|Q86WI3|NLRC5_HUMAN 1012 SGNALGDEGAARLA 1025 79***********9 PP == domain 2 score: 2.7 bits; conditional E-value: 0.7 GALA_LRR 2 nNaIGdaGArALAa 15 +N IGd G ++L++ sp|Q86WI3|NLRC5_HUMAN 1587 RNSIGDVGCCHLSE 1600 69999999999964 PP == domain 3 score: 11.7 bits; conditional E-value: 0.00094 GALA_LRR 1 snNaIGdaGArALAa 15 s+N IGdaG+++LA+ sp|Q86WI3|NLRC5_HUMAN 1614 SHNQIGDAGVQHLAT 1628 78************6 PP == domain 4 score: 1.9 bits; conditional E-value: 1.3 GALA_LRR 1 snNaIGdaGArALAaNtsL 19 s+N I++aG LA++ L sp|Q86WI3|NLRC5_HUMAN 1642 SGNSISSAGGVQLAESLVL 1660 79************98765 PP == domain 5 score: 2.7 bits; conditional E-value: 0.68 GALA_LRR 2 nNaIGdaGArALA 14 N +Gd++A+ LA sp|Q86WI3|NLRC5_HUMAN 1777 WNLLGDEAAAELA 1789 6999********9 PP >> sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.3 0.0 0.051 4.3e+02 4 24 .] 152 173 .. 150 173 .. 0.87 2 ! 12.4 0.0 0.00056 4.7 1 24 [] 484 508 .. 484 508 .. 0.94 Alignments for each domain: == domain 1 score: 6.3 bits; conditional E-value: 0.051 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++++ G + LA +tsL+SLdl sp|Q9C5D2|FBL4_ARATH 152 NVSSVGLCSLAQkCTSLKSLDL 173 5778899999999********8 PP == domain 2 score: 12.4 bits; conditional E-value: 0.00056 GALA_LRR 1 snNaIGdaGArALAa.NtsLtSLdl 24 ++N I+daG+ A A+ ++ Lt Ld+ sp|Q9C5D2|FBL4_ARATH 484 GCNQISDAGITAIARgCPQLTHLDI 508 589********************96 PP >> sp|Q9H469|FXL15_HUMAN F-box/LRR-repeat protein 15 OS=Homo sapiens GN=FBXL15 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 1.9 1.6e+04 13 21 .. 110 118 .. 107 121 .. 0.86 2 ! 9.3 0.0 0.0057 48 3 16 .. 204 217 .. 203 225 .. 0.91 3 ! 10.4 0.0 0.0025 21 4 24 .] 231 252 .. 231 252 .. 0.95 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 1.9 GALA_LRR 13 LAaNtsLtS 21 LA+N+ L+S sp|Q9H469|FXL15_HUMAN 110 LARNPQLRS 118 9******98 PP == domain 2 score: 9.3 bits; conditional E-value: 0.0057 GALA_LRR 3 NaIGdaGArALAaN 16 ++Gda+++ LA+N sp|Q9H469|FXL15_HUMAN 204 ANVGDAAVQELARN 217 579**********8 PP == domain 3 score: 10.4 bits; conditional E-value: 0.0025 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++G++G+r LA+ ++ L+SL++ sp|Q9H469|FXL15_HUMAN 231 RVGSDGVRTLAEyCPVLRSLRV 252 68******************97 PP >> sp|Q8N4P6|LRC71_HUMAN Leucine-rich repeat-containing protein 71 OS=Homo sapiens GN=LRRC71 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.9 0.1 0.0036 30 1 14 [. 228 241 .. 228 245 .. 0.92 2 ? 4.0 0.2 0.28 2.4e+03 16 24 .] 251 259 .. 249 259 .. 0.91 3 ? 6.3 0.0 0.051 4.3e+02 2 15 .. 261 274 .. 260 278 .. 0.84 4 ? 2.1 0.0 1.1 9.5e+03 2 15 .. 289 302 .. 288 302 .. 0.89 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.0036 GALA_LRR 1 snNaIGdaGArALA 14 +nN+I+d+GA++L sp|Q8N4P6|LRC71_HUMAN 228 RNNNIDDRGAQLLG 241 79**********95 PP == domain 2 score: 4.0 bits; conditional E-value: 0.28 GALA_LRR 16 NtsLtSLdl 24 N++L+SL+l sp|Q8N4P6|LRC71_HUMAN 251 NRTLVSLNL 259 9*******7 PP == domain 3 score: 6.3 bits; conditional E-value: 0.051 GALA_LRR 2 nNaIGdaGArALAa 15 N IGd+GA + A+ sp|Q8N4P6|LRC71_HUMAN 261 FNHIGDEGAGYIAD 274 69*******99886 PP == domain 4 score: 2.1 bits; conditional E-value: 1.1 GALA_LRR 2 nNaIGdaGArALAa 15 +N+I d GA LA+ sp|Q8N4P6|LRC71_HUMAN 289 HNRIQDKGALKLAE 302 79********9995 PP >> sp|E2RKN7|FXL15_CANFA F-box/LRR-repeat protein 15 OS=Canis familiaris GN=FBXL15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 0.00073 6.1 3 24 .] 204 226 .. 203 226 .. 0.87 2 ? 10.2 0.0 0.0029 25 4 24 .] 231 252 .. 231 252 .. 0.95 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.00073 GALA_LRR 3 NaIGdaGArALAa.NtsLtSLdl 24 ++Gda+++ LA+ ++ L Ldl sp|E2RKN7|FXL15_CANFA 204 ANVGDAAVQELARnCPELEHLDL 226 579**********9999999986 PP == domain 2 score: 10.2 bits; conditional E-value: 0.0029 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++G++G+r LA+ ++ L+SL++ sp|E2RKN7|FXL15_CANFA 231 RVGSDGVRTLAEyCPALRSLRV 252 68******************97 PP >> sp|Q8K3Z0|NOD2_MOUSE Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus GN=Nod2 PE=2 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 4.6 3.9e+04 3 14 .. 752 763 .. 751 763 .. 0.94 2 ? -0.6 0.0 7.6 6.4e+04 2 13 .. 779 790 .. 778 790 .. 0.86 3 ? 5.8 0.0 0.072 6.1e+02 1 13 [. 803 815 .. 803 819 .. 0.86 4 ? 6.6 0.3 0.041 3.5e+02 1 14 [. 859 872 .. 859 884 .. 0.93 5 ? 6.6 0.0 0.042 3.5e+02 2 15 .. 888 901 .. 887 901 .. 0.92 6 ? 2.5 0.2 0.82 6.9e+03 2 14 .. 916 928 .. 916 930 .. 0.90 7 ? -0.7 0.0 8.4 7.1e+04 10 22 .. 928 940 .. 928 942 .. 0.86 8 ? 1.0 0.1 2.5 2.1e+04 1 13 [. 971 983 .. 971 986 .. 0.91 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 4.6 GALA_LRR 3 NaIGdaGArALA 14 +++G+a +ALA sp|Q8K3Z0|NOD2_MOUSE 752 CRVGPAECAALA 763 89*********9 PP == domain 2 score: -0.6 bits; conditional E-value: 7.6 GALA_LRR 2 nNaIGdaGArAL 13 +N +Gd G++ L sp|Q8K3Z0|NOD2_MOUSE 779 YNSVGDVGVEQL 790 799*****9866 PP == domain 3 score: 5.8 bits; conditional E-value: 0.072 GALA_LRR 1 snNaIGdaGArAL 13 ++N+I+d+GAr L sp|Q8K3Z0|NOD2_MOUSE 803 RDNNISDRGARTL 815 689********88 PP == domain 4 score: 6.6 bits; conditional E-value: 0.041 GALA_LRR 1 snNaIGdaGArALA 14 +nN I++aGA+ LA sp|Q8K3Z0|NOD2_MOUSE 859 GNNHITAAGAEVLA 872 69***********9 PP == domain 5 score: 6.6 bits; conditional E-value: 0.042 GALA_LRR 2 nNaIGdaGArALAa 15 +N +Gd G +ALA+ sp|Q8K3Z0|NOD2_MOUSE 888 GNSVGDKGTQALAE 901 69**********95 PP == domain 6 score: 2.5 bits; conditional E-value: 0.82 GALA_LRR 2 nNaIGdaGArALA 14 +N+IG+ GA+ALA sp|Q8K3Z0|NOD2_MOUSE 916 GNNIGSMGAEALA 928 589*********9 PP == domain 7 score: -0.7 bits; conditional E-value: 8.4 GALA_LRR 10 ArALAaNtsLtSL 22 A +L N+sL L sp|Q8K3Z0|NOD2_MOUSE 928 ALMLEKNKSLEEL 940 7899******998 PP == domain 8 score: 1.0 bits; conditional E-value: 2.5 GALA_LRR 1 snNaIGdaGArAL 13 snN+I+ +GA+AL sp|Q8K3Z0|NOD2_MOUSE 971 SNNGITYRGAEAL 983 79**********9 PP >> sp|D4ABB4|FXL15_RAT F-box/LRR-repeat protein 15 OS=Rattus norvegicus GN=Fbxl15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 0.0 1.9 1.6e+04 13 21 .. 110 118 .. 107 121 .. 0.86 2 ? 7.8 0.0 0.017 1.5e+02 3 24 .] 204 226 .. 203 226 .. 0.86 3 ? 10.2 0.0 0.0029 25 4 24 .] 231 252 .. 231 252 .. 0.95 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 1.9 GALA_LRR 13 LAaNtsLtS 21 LA+N+ L+S sp|D4ABB4|FXL15_RAT 110 LARNPQLRS 118 9******98 PP == domain 2 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 3 NaIGdaGArALAa.NtsLtSLdl 24 ++Gd +++ LA+ ++ L Ldl sp|D4ABB4|FXL15_RAT 204 ANVGDTAVQELARnCPQLEHLDL 226 569**********8888888886 PP == domain 3 score: 10.2 bits; conditional E-value: 0.0029 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++G++G+r LA+ ++ L+SL++ sp|D4ABB4|FXL15_RAT 231 RVGSDGVRTLAEyCPALRSLRV 252 68******************97 PP >> sp|Q9Y239|NOD1_HUMAN Nucleotide-binding oligomerization domain-containing protein 1 OS=Homo sapiens GN=NOD1 PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 0.94 7.9e+03 2 11 .. 765 774 .. 764 775 .. 0.91 2 ? 7.5 1.0 0.02 1.7e+02 2 15 .. 821 834 .. 820 847 .. 0.70 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.94 GALA_LRR 2 nNaIGdaGAr 11 nN I+d GAr sp|Q9Y239|NOD1_HUMAN 765 NNQITDVGAR 774 79*******9 PP == domain 2 score: 7.5 bits; conditional E-value: 0.02 GALA_LRR 2 nNaIGdaGArALAa 15 +N +Gd+GA+A+A+ sp|Q9Y239|NOD1_HUMAN 821 GNQVGDEGAKAFAE 834 68999999999884 PP >> sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 0.7 0.0079 67 3 16 .. 675 688 .. 673 700 .. 0.92 2 ? 8.5 2.2 0.01 84 2 23 .. 702 727 .. 701 728 .. 0.72 3 ? 8.7 0.3 0.0083 70 1 15 [. 785 799 .. 785 800 .. 0.90 4 ? 1.2 0.3 2.1 1.8e+04 11 24 .] 827 840 .. 826 840 .. 0.85 5 ? 6.8 0.1 0.036 3e+02 3 13 .. 843 853 .. 841 868 .. 0.91 6 ? 0.5 0.1 3.5 3e+04 3 14 .. 871 882 .. 869 884 .. 0.87 7 ? 6.1 0.3 0.057 4.8e+02 11 24 .] 911 924 .. 910 924 .. 0.84 8 ? 2.5 0.2 0.8 6.7e+03 3 10 .. 927 934 .. 926 935 .. 0.93 9 ? 3.4 0.5 0.43 3.6e+03 4 14 .. 956 966 .. 955 980 .. 0.90 10 ? 9.5 1.1 0.0047 40 1 15 [. 981 995 .. 981 1001 .. 0.90 11 ? 0.8 0.0 2.8 2.3e+04 2 12 .. 1038 1048 .. 1037 1051 .. 0.87 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0079 GALA_LRR 3 NaIGdaGArALAaN 16 N IG+ GA+ALA++ sp|Q5DU56|NLRC3_MOUSE 675 NQIGNKGAKALARS 688 89**********97 PP == domain 2 score: 8.5 bits; conditional E-value: 0.01 GALA_LRR 2 nNaIGdaGArALA....aNtsLtSLd 23 N IG+ GA+ALA N++LtSL+ sp|Q5DU56|NLRC3_MOUSE 702 SNSIGPPGAKALAdalkINRTLTSLS 727 69**********95553356666665 PP == domain 3 score: 8.7 bits; conditional E-value: 0.0083 GALA_LRR 1 snNaIGdaGArALAa 15 s N IGd+GA ALA+ sp|Q5DU56|NLRC3_MOUSE 785 SSNTIGDRGAIALAE 799 5699**********6 PP == domain 4 score: 1.2 bits; conditional E-value: 2.1 GALA_LRR 11 rALAaNtsLtSLdl 24 rAL +N +L SL+l sp|Q5DU56|NLRC3_MOUSE 827 RALCSNQTLSSLNL 840 66678********7 PP == domain 5 score: 6.8 bits; conditional E-value: 0.036 GALA_LRR 3 NaIGdaGArAL 13 N I+++GA+AL sp|Q5DU56|NLRC3_MOUSE 843 NSISPEGAQAL 853 99********9 PP == domain 6 score: 0.5 bits; conditional E-value: 3.5 GALA_LRR 3 NaIGdaGArALA 14 N + d+GA+A A sp|Q5DU56|NLRC3_MOUSE 871 NLLHDRGAQAIA 882 7889******87 PP == domain 7 score: 6.1 bits; conditional E-value: 0.057 GALA_LRR 11 rALAaNtsLtSLdl 24 +AL N++Lt+Ldl sp|Q5DU56|NLRC3_MOUSE 911 QALQLNRTLTTLDL 924 56667********8 PP == domain 8 score: 2.5 bits; conditional E-value: 0.8 GALA_LRR 3 NaIGdaGA 10 NaIGd+GA sp|Q5DU56|NLRC3_MOUSE 927 NAIGDEGA 934 9******9 PP == domain 9 score: 3.4 bits; conditional E-value: 0.43 GALA_LRR 4 aIGdaGArALA 14 IG+ GA+AL sp|Q5DU56|NLRC3_MOUSE 956 SIGSQGAQALG 966 59*******96 PP == domain 10 score: 9.5 bits; conditional E-value: 0.0047 GALA_LRR 1 snNaIGdaGArALAa 15 ++N +G+aGA+ALA+ sp|Q5DU56|NLRC3_MOUSE 981 RGNDVGAAGAKALAN 995 68************7 PP == domain 11 score: 0.8 bits; conditional E-value: 2.8 GALA_LRR 2 nNaIGdaGArA 12 +N IG+ +Ar+ sp|Q5DU56|NLRC3_MOUSE 1038 GNPIGESAARM 1048 699******97 PP >> sp|Q5U201|AMN1_RAT Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.0 0.13 1.1e+03 2 24 .] 70 92 .. 69 92 .. 0.91 2 ? 0.7 0.0 3.1 2.6e+04 3 12 .. 100 109 .. 99 113 .. 0.86 3 ? 9.1 0.0 0.0064 54 1 16 [. 124 139 .. 124 139 .. 0.91 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.13 GALA_LRR 2 nNaIGdaGArALAaNtsLtSLdl 24 ++I+d + ++L ++ L+ L+l sp|Q5U201|AMN1_RAT 70 SCNISDVALQHLCKCRKLKALNL 92 599*********99999999997 PP == domain 2 score: 0.7 bits; conditional E-value: 3.1 GALA_LRR 3 NaIGdaGArA 12 N I+++G++A sp|Q5U201|AMN1_RAT 100 NSITSEGIKA 109 89*****998 PP == domain 3 score: 9.1 bits; conditional E-value: 0.0064 GALA_LRR 1 snNaIGdaGArALAaN 16 +++ ++d+G+ ALA N sp|Q5U201|AMN1_RAT 124 GCCSVTDEGVLALALN 139 5799**********98 PP >> sp|Q91W61|FXL15_MOUSE F-box/LRR-repeat protein 15 OS=Mus musculus GN=Fbxl15 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 1.9 1.6e+04 13 21 .. 110 118 .. 107 121 .. 0.86 2 ? 7.8 0.0 0.017 1.5e+02 3 24 .] 204 226 .. 203 226 .. 0.86 3 ? 10.2 0.0 0.0029 25 4 24 .] 231 252 .. 231 252 .. 0.95 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 1.9 GALA_LRR 13 LAaNtsLtS 21 LA+N+ L+S sp|Q91W61|FXL15_MOUSE 110 LARNPQLRS 118 9******98 PP == domain 2 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 3 NaIGdaGArALAa.NtsLtSLdl 24 ++Gd +++ LA+ ++ L Ldl sp|Q91W61|FXL15_MOUSE 204 ANVGDTAVQELARnCPQLEHLDL 226 569**********8888888886 PP == domain 3 score: 10.2 bits; conditional E-value: 0.0029 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++G++G+r LA+ ++ L+SL++ sp|Q91W61|FXL15_MOUSE 231 RVGSDGVRTLAEyCPALRSLRV 252 68******************97 PP >> sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization domain-containing protein 1 OS=Mus musculus GN=Nod1 PE=2 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.0 3.9 3.3e+04 2 11 .. 765 774 .. 765 775 .. 0.91 2 ? 10.7 0.6 0.0021 17 2 15 .. 821 834 .. 820 847 .. 0.71 3 ? 4.5 0.2 0.19 1.6e+03 10 20 .. 861 871 .. 848 873 .. 0.87 4 ? 0.8 0.0 2.8 2.3e+04 3 15 .. 906 918 .. 905 919 .. 0.94 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 3.9 GALA_LRR 2 nNaIGdaGAr 11 nN I+d GAr sp|Q8BHB0|NOD1_MOUSE 765 NNQITDIGAR 774 79*******9 PP == domain 2 score: 10.7 bits; conditional E-value: 0.0021 GALA_LRR 2 nNaIGdaGArALAa 15 +N IGd+GA+A+A+ sp|Q8BHB0|NOD1_MOUSE 821 GNQIGDEGAKAFAE 834 699*****999883 PP == domain 3 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 10 ArALAaNtsLt 20 A+AL Nt+Lt sp|Q8BHB0|NOD1_MOUSE 861 AQALKQNTTLT 871 89********9 PP == domain 4 score: 0.8 bits; conditional E-value: 2.8 GALA_LRR 3 NaIGdaGArALAa 15 N+I++ G + LA+ sp|Q8BHB0|NOD1_MOUSE 906 NRITAKGTAQLAR 918 9***********7 PP >> sp|Q8HZP9|RINI_PANTR Ribonuclease inhibitor OS=Pan troglodytes GN=RNH1 PE=2 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.19 1.6e+03 1 13 [. 121 133 .. 121 133 .. 0.93 2 ? 4.0 0.0 0.28 2.4e+03 1 13 [. 178 190 .. 178 190 .. 0.92 3 ? -0.1 0.0 5.4 4.6e+04 2 13 .. 236 247 .. 235 247 .. 0.85 4 ? 7.8 0.3 0.017 1.4e+02 2 13 .. 293 304 .. 292 304 .. 0.92 5 ? 6.1 0.0 0.056 4.8e+02 1 13 [. 349 361 .. 349 361 .. 0.94 6 ? 2.9 0.6 0.63 5.3e+03 9 24 .] 391 405 .. 383 405 .. 0.74 7 ? 6.6 0.0 0.039 3.3e+02 1 14 [. 406 419 .. 406 421 .. 0.86 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 1 snNaIGdaGArAL 13 s+N +GdaG ++L sp|Q8HZP9|RINI_PANTR 121 SDNLLGDAGLQLL 133 789********98 PP == domain 2 score: 4.0 bits; conditional E-value: 0.28 GALA_LRR 1 snNaIGdaGArAL 13 snN I +aG+r L sp|Q8HZP9|RINI_PANTR 178 SNNDINEAGVRVL 190 89********977 PP == domain 3 score: -0.1 bits; conditional E-value: 5.4 GALA_LRR 2 nNaIGdaGArAL 13 N +Gd G + L sp|Q8HZP9|RINI_PANTR 236 SNKLGDVGMAEL 247 599*****9987 PP == domain 4 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 2 nNaIGdaGArAL 13 +N++Gd+GAr+L sp|Q8HZP9|RINI_PANTR 293 GNELGDEGARLL 304 89********98 PP == domain 5 score: 6.1 bits; conditional E-value: 0.056 GALA_LRR 1 snNaIGdaGArAL 13 snN++ daG++ L sp|Q8HZP9|RINI_PANTR 349 SNNRLEDAGVQEL 361 89*********98 PP == domain 6 score: 2.9 bits; conditional E-value: 0.63 GALA_LRR 9 GArALAaNtsLtSLdl 24 +A +LA+ sL+ Ldl sp|Q8HZP9|RINI_PANTR 391 AATLLAN-HSLRELDL 405 5666666.8*****97 PP == domain 7 score: 6.6 bits; conditional E-value: 0.039 GALA_LRR 1 snNaIGdaGArALA 14 snN++GdaG+ L sp|Q8HZP9|RINI_PANTR 406 SNNCLGDAGILQLV 419 89********9885 PP >> sp|E1BNS0|FXL15_BOVIN F-box/LRR-repeat protein 15 OS=Bos taurus GN=FBXL15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 1.9 1.6e+04 13 21 .. 110 118 .. 107 121 .. 0.86 2 ? 7.8 0.0 0.017 1.4e+02 3 24 .] 204 226 .. 203 226 .. 0.86 3 ? 9.5 0.0 0.005 42 4 24 .] 231 252 .. 231 252 .. 0.95 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 1.9 GALA_LRR 13 LAaNtsLtS 21 LA+N+ L+S sp|E1BNS0|FXL15_BOVIN 110 LARNPQLRS 118 9******98 PP == domain 2 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 3 NaIGdaGArALAa.NtsLtSLdl 24 ++Gd +++ LA+ ++ L Ldl sp|E1BNS0|FXL15_BOVIN 204 ANVGDTAVQELARnCPELQHLDL 226 569**********8888888886 PP == domain 3 score: 9.5 bits; conditional E-value: 0.005 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 ++G++G+r LA+ ++ L+SL++ sp|E1BNS0|FXL15_BOVIN 231 RVGSDGIRTLAEyCPALRSLRV 252 68******************97 PP >> sp|Q4V8D9|LRC34_RAT Leucine-rich repeat-containing protein 34 OS=Rattus norvegicus GN=Lrrc34 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.17 1.4e+03 1 14 [. 82 95 .. 82 96 .. 0.86 2 ? 0.2 0.0 4.4 3.7e+04 3 14 .. 112 123 .. 111 133 .. 0.80 3 ? 7.7 0.0 0.018 1.5e+02 1 20 [. 281 298 .. 281 299 .. 0.83 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.17 GALA_LRR 1 snNaIGdaGArALA 14 ++N IGd GA ++A sp|Q4V8D9|LRC34_RAT 82 RYNLIGDVGAYYAA 95 68********8777 PP == domain 2 score: 0.2 bits; conditional E-value: 4.4 GALA_LRR 3 NaIGdaGArALA 14 N IG++G ++ A sp|Q4V8D9|LRC34_RAT 112 NDIGPEGGELIA 123 889999966655 PP == domain 3 score: 7.7 bits; conditional E-value: 0.018 GALA_LRR 1 snNaIGdaGArALAaNtsLt 20 s N+I +aGA++L++ +Lt sp|Q4V8D9|LRC34_RAT 281 SFNRIENAGAKYLSE--TLT 298 67***********97..555 PP >> sp|Q6ZQY2|YV012_HUMAN Leucine-rich repeat-containing protein LOC400891 OS=Homo sapiens PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.1 0.0017 14 4 17 .. 90 103 .. 87 104 .. 0.87 2 ? 0.9 1.1 2.5 2.1e+04 8 15 .. 122 129 .. 115 130 .. 0.83 3 ? 6.2 0.1 0.052 4.4e+02 3 13 .. 145 155 .. 143 155 .. 0.90 4 ? 4.5 1.1 0.19 1.6e+03 1 15 [. 171 185 .. 171 198 .. 0.86 5 ? 10.0 0.1 0.0034 28 12 24 .] 214 226 .. 213 226 .. 0.95 6 ? 1.7 0.0 1.5 1.2e+04 1 12 [. 255 266 .. 255 266 .. 0.89 7 ? -0.9 0.1 9.8 8.3e+04 1 10 [. 283 292 .. 283 296 .. 0.78 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.0017 GALA_LRR 4 aIGdaGArALAaNt 17 ++G+ GArALA++ sp|Q6ZQY2|YV012_HUMAN 90 GLGPQGARALASSL 103 79*********986 PP == domain 2 score: 0.9 bits; conditional E-value: 2.5 GALA_LRR 8 aGArALAa 15 aGA+ALA+ sp|Q6ZQY2|YV012_HUMAN 122 AGAEALAG 129 9******6 PP == domain 3 score: 6.2 bits; conditional E-value: 0.052 GALA_LRR 3 NaIGdaGArAL 13 N +G aGA+AL sp|Q6ZQY2|YV012_HUMAN 145 NQLGVAGAQAL 155 89********9 PP == domain 4 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 1 snNaIGdaGArALAa 15 s+N++ + +A++LA+ sp|Q6ZQY2|YV012_HUMAN 171 SGNGLEEQAAQHLAE 185 789999999999995 PP == domain 5 score: 10.0 bits; conditional E-value: 0.0034 GALA_LRR 12 ALAaNtsLtSLdl 24 ALA+Nt Lt L++ sp|Q6ZQY2|YV012_HUMAN 214 ALAENTGLTELNV 226 9***********8 PP == domain 6 score: 1.7 bits; conditional E-value: 1.5 GALA_LRR 1 snNaIGdaGArA 12 s+N+ Gd GA A sp|Q6ZQY2|YV012_HUMAN 255 SYNGFGDPGASA 266 79*******966 PP == domain 7 score: -0.9 bits; conditional E-value: 9.8 GALA_LRR 1 snNaIGdaGA 10 snN+I++ GA sp|Q6ZQY2|YV012_HUMAN 283 SNNRISAMGA 292 79***98666 PP >> sp|Q32L08|AMN1_BOVIN Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 0.0 1.3 1.1e+04 2 24 .] 70 92 .. 69 92 .. 0.89 2 ? 9.6 0.0 0.0044 37 1 16 [. 124 139 .. 124 141 .. 0.92 3 ? 0.6 0.0 3.2 2.7e+04 4 16 .. 153 165 .. 153 165 .. 0.90 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 1.3 GALA_LRR 2 nNaIGdaGArALAaNtsLtSLdl 24 + I+d + +L +++ L+ L+l sp|Q32L08|AMN1_BOVIN 70 SCDISDTALLHLCNCRKLKKLNL 92 589999999999999******97 PP == domain 2 score: 9.6 bits; conditional E-value: 0.0044 GALA_LRR 1 snNaIGdaGArALAaN 16 ++++++d+G+ ALA N sp|Q32L08|AMN1_BOVIN 124 RCCNLTDEGVLALALN 139 5799**********98 PP == domain 3 score: 0.6 bits; conditional E-value: 3.2 GALA_LRR 4 aIGdaGArALAaN 16 +I+d +AL +N sp|Q32L08|AMN1_BOVIN 153 GITDVSLQALGEN 165 799*******987 PP >> sp|P13489|RINI_HUMAN Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.19 1.6e+03 1 13 [. 121 133 .. 121 133 .. 0.93 2 ? 4.0 0.0 0.28 2.4e+03 1 13 [. 178 190 .. 178 190 .. 0.92 3 ? -0.1 0.0 5.4 4.6e+04 2 13 .. 236 247 .. 235 247 .. 0.85 4 ? 7.8 0.3 0.017 1.4e+02 2 13 .. 293 304 .. 292 304 .. 0.92 5 ? 6.2 0.0 0.053 4.4e+02 1 13 [. 349 361 .. 349 361 .. 0.94 6 ? 2.9 0.6 0.63 5.3e+03 9 24 .] 391 405 .. 383 405 .. 0.74 7 ? 6.6 0.0 0.039 3.3e+02 1 14 [. 406 419 .. 406 421 .. 0.86 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 1 snNaIGdaGArAL 13 s+N +GdaG ++L sp|P13489|RINI_HUMAN 121 SDNLLGDAGLQLL 133 789********98 PP == domain 2 score: 4.0 bits; conditional E-value: 0.28 GALA_LRR 1 snNaIGdaGArAL 13 snN I +aG+r L sp|P13489|RINI_HUMAN 178 SNNDINEAGVRVL 190 89********977 PP == domain 3 score: -0.1 bits; conditional E-value: 5.4 GALA_LRR 2 nNaIGdaGArAL 13 N +Gd G + L sp|P13489|RINI_HUMAN 236 SNKLGDVGMAEL 247 599*****9987 PP == domain 4 score: 7.8 bits; conditional E-value: 0.017 GALA_LRR 2 nNaIGdaGArAL 13 +N++Gd+GAr+L sp|P13489|RINI_HUMAN 293 GNELGDEGARLL 304 89********98 PP == domain 5 score: 6.2 bits; conditional E-value: 0.053 GALA_LRR 1 snNaIGdaGArAL 13 snN++ daG+r L sp|P13489|RINI_HUMAN 349 SNNRLEDAGVREL 361 89*********98 PP == domain 6 score: 2.9 bits; conditional E-value: 0.63 GALA_LRR 9 GArALAaNtsLtSLdl 24 +A +LA+ sL+ Ldl sp|P13489|RINI_HUMAN 391 AATLLAN-HSLRELDL 405 5666666.8*****97 PP == domain 7 score: 6.6 bits; conditional E-value: 0.039 GALA_LRR 1 snNaIGdaGArALA 14 snN++GdaG+ L sp|P13489|RINI_HUMAN 406 SNNCLGDAGILQLV 419 89********9885 PP >> sp|Q3V3V9|LR16C_MOUSE Leucine-rich repeat-containing protein 16C OS=Mus musculus GN=Rltpr PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.9 1.1 9.2e+03 1 15 [. 282 296 .. 282 304 .. 0.87 2 ? 6.2 0.0 0.052 4.4e+02 10 24 .] 536 550 .. 536 550 .. 0.93 3 ? 14.0 0.4 0.00018 1.5 1 15 [. 551 565 .. 551 568 .. 0.93 4 ? 2.8 0.0 0.65 5.5e+03 10 23 .. 592 605 .. 590 606 .. 0.90 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 1.1 GALA_LRR 1 snNaIGdaGArALAa 15 s+N ++d+G rAL + sp|Q3V3V9|LR16C_MOUSE 282 SGNLLDDRGMRALGR 296 789999999999965 PP == domain 2 score: 6.2 bits; conditional E-value: 0.052 GALA_LRR 10 ArALAaNtsLtSLdl 24 +rAL +N+ Lt Ld+ sp|Q3V3V9|LR16C_MOUSE 536 IRALGTNPKLTALDI 550 69***********96 PP == domain 3 score: 14.0 bits; conditional E-value: 0.00018 GALA_LRR 1 snNaIGdaGArALAa 15 s+NaIGdaGA++LA sp|Q3V3V9|LR16C_MOUSE 551 SGNAIGDAGAKMLAK 565 79***********95 PP == domain 4 score: 2.8 bits; conditional E-value: 0.65 GALA_LRR 10 ArALAaNtsLtSLd 23 A+AL N sL+S+ sp|Q3V3V9|LR16C_MOUSE 592 AQALEQNHSLKSMP 605 9***********86 PP >> sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 7 5.9e+04 4 23 .. 310 330 .. 310 331 .. 0.75 2 ? -0.3 0.0 6.4 5.4e+04 3 11 .. 361 369 .. 360 370 .. 0.85 3 ? 10.6 0.0 0.0022 18 4 24 .] 388 409 .. 385 409 .. 0.93 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 7 GALA_LRR 4 aIGdaGArALAa.NtsLtSLd 23 +++d+G r+L +ts++ L+ sp|Q5BJ29|FBXL7_MOUSE 310 RLTDEGLRYLVIyCTSIKELS 330 5789****9977777777666 PP == domain 2 score: -0.3 bits; conditional E-value: 6.4 GALA_LRR 3 NaIGdaGAr 11 ++I+d G+r sp|Q5BJ29|FBXL7_MOUSE 361 GRITDVGIR 369 79*****99 PP == domain 3 score: 10.6 bits; conditional E-value: 0.0022 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+d G+++LA +t L+SLd+ sp|Q5BJ29|FBXL7_MOUSE 388 GITDHGVEYLAKnCTKLKSLDI 409 8*******************96 PP >> sp|Q9SN10|FBL16_ARATH F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 0.00053 4.5 2 24 .] 395 418 .. 394 418 .. 0.91 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 0.00053 GALA_LRR 2 nNaIGdaGArALAa.NtsLtSLdl 24 ++ I+d G++ALA ++ L+ L + sp|Q9SN10|FBL16_ARATH 395 GCLISDVGVQALALgCPKLVKLKV 418 699***********9999999976 PP >> sp|Q8IZ02|LRC34_HUMAN Leucine-rich repeat-containing protein 34 OS=Homo sapiens GN=LRRC34 PE=2 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 5.4 4.6e+04 3 13 .. 148 158 .. 147 160 .. 0.79 2 ? 1.6 0.0 1.6 1.3e+04 1 15 [. 257 271 .. 257 271 .. 0.91 3 ? 0.3 0.0 4.2 3.6e+04 13 24 .] 273 284 .. 272 284 .. 0.83 4 ? 4.0 0.2 0.27 2.3e+03 1 18 [. 285 300 .. 285 313 .. 0.84 5 ? -0.5 0.0 7.2 6.1e+04 3 16 .. 316 329 .. 315 331 .. 0.84 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 5.4 GALA_LRR 3 NaIGdaGArAL 13 N IG++G ++ sp|Q8IZ02|LRC34_HUMAN 148 NDIGPEGGELI 158 89*****7665 PP == domain 2 score: 1.6 bits; conditional E-value: 1.6 GALA_LRR 1 snNaIGdaGArALAa 15 s+N I+ +G +LA+ sp|Q8IZ02|LRC34_HUMAN 257 SCNKITHDGMVYLAD 271 78**********996 PP == domain 3 score: 0.3 bits; conditional E-value: 4.2 GALA_LRR 13 LAaNtsLtSLdl 24 L +Nt+L dl sp|Q8IZ02|LRC34_HUMAN 273 LKSNTTLEVIDL 284 568****99986 PP == domain 4 score: 4.0 bits; conditional E-value: 0.27 GALA_LRR 1 snNaIGdaGArALAaNts 18 s N+I +aGA +L++ + sp|Q8IZ02|LRC34_HUMAN 285 SFNRIENAGANYLSE--T 300 579******999986..4 PP == domain 5 score: -0.5 bits; conditional E-value: 7.2 GALA_LRR 3 NaIGdaGArALAaN 16 N+I +G AL+ + sp|Q8IZ02|LRC34_HUMAN 316 NNIEGEGLVALSQS 329 78********9987 PP >> sp|Q9DAM1|LRC34_MOUSE Leucine-rich repeat-containing protein 34 OS=Mus musculus GN=Lrrc34 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 0.8 6.7e+03 1 10 [. 82 91 .. 82 95 .. 0.93 2 ? 0.0 0.0 5 4.2e+04 3 14 .. 112 123 .. 111 126 .. 0.81 3 ? 3.1 0.1 0.51 4.3e+03 13 24 .] 269 280 .. 268 280 .. 0.87 4 ? 5.5 0.0 0.089 7.5e+02 1 20 [. 281 298 .. 281 299 .. 0.83 5 ? -0.8 0.0 9.1 7.7e+04 16 24 .] 301 309 .. 297 309 .. 0.85 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.8 GALA_LRR 1 snNaIGdaGA 10 ++N IGd GA sp|Q9DAM1|LRC34_MOUSE 82 RYNLIGDVGA 91 68*******9 PP == domain 2 score: 0.0 bits; conditional E-value: 5 GALA_LRR 3 NaIGdaGArALA 14 N IG++G ++ A sp|Q9DAM1|LRC34_MOUSE 112 NDIGPEGGELIA 123 89*****77655 PP == domain 3 score: 3.1 bits; conditional E-value: 0.51 GALA_LRR 13 LAaNtsLtSLdl 24 L +Nt+L Ldl sp|Q9DAM1|LRC34_MOUSE 269 LKSNTTLEVLDL 280 568*******97 PP == domain 4 score: 5.5 bits; conditional E-value: 0.089 GALA_LRR 1 snNaIGdaGArALAaNtsLt 20 s N+I aGA++L++ +Lt sp|Q9DAM1|LRC34_MOUSE 281 SFNRIETAGAKYLSE--TLT 298 679**********97..555 PP == domain 5 score: -0.8 bits; conditional E-value: 9.1 GALA_LRR 16 NtsLtSLdl 24 N+sL+ L++ sp|Q9DAM1|LRC34_MOUSE 301 NRSLKALSV 309 9****9987 PP >> sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.0 4.3 3.7e+04 2 16 .. 203 217 .. 202 217 .. 0.89 2 ? 3.4 0.1 0.42 3.6e+03 1 15 [. 228 242 .. 228 244 .. 0.88 3 ? 1.5 0.0 1.7 1.5e+04 1 11 [. 254 264 .. 254 266 .. 0.88 4 ? 5.1 0.0 0.12 1e+03 3 15 .. 469 481 .. 467 483 .. 0.85 5 ? 0.3 0.0 4 3.3e+04 17 24 .] 512 519 .. 511 519 .. 0.91 6 ? 4.8 0.0 0.15 1.2e+03 1 17 [. 546 562 .. 546 563 .. 0.88 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 4.3 GALA_LRR 2 nNaIGdaGArALAaN 16 + +I+d G A A+N sp|Q708Y0|EBF2_ARATH 203 CPGITDSGLVAIAEN 217 689********9998 PP == domain 2 score: 3.4 bits; conditional E-value: 0.42 GALA_LRR 1 snNaIGdaGArALAa 15 s+ ++G++G rA A+ sp|Q708Y0|EBF2_ARATH 228 SCSGVGNEGLRAIAR 242 6789********998 PP == domain 3 score: 1.5 bits; conditional E-value: 1.7 GALA_LRR 1 snNaIGdaGAr 11 s+ +IGd G++ sp|Q708Y0|EBF2_ARATH 254 SCPRIGDQGVA 264 678******96 PP == domain 4 score: 5.1 bits; conditional E-value: 0.12 GALA_LRR 3 NaIGdaGArALAa 15 N+++daG+r L sp|Q708Y0|EBF2_ARATH 469 NGVTDAGVRELLQ 481 9********9965 PP == domain 5 score: 0.3 bits; conditional E-value: 4 GALA_LRR 17 tsLtSLdl 24 ++L SL+l sp|Q708Y0|EBF2_ARATH 512 RTLESLNL 519 8******7 PP == domain 6 score: 4.8 bits; conditional E-value: 0.15 GALA_LRR 1 snNaIGdaGArALAaNt 17 sn ++d G++ALA+++ sp|Q708Y0|EBF2_ARATH 546 SNTLVSDHGIKALASSP 562 678899*********97 PP >> sp|P29315|RINI_RAT Ribonuclease inhibitor OS=Rattus norvegicus GN=Rnh1 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.1 5 4.2e+04 15 24 .] 49 58 .. 49 58 .. 0.89 2 ? 1.6 0.0 1.6 1.3e+04 2 11 .. 60 69 .. 59 70 .. 0.83 3 ? 1.5 0.0 1.7 1.4e+04 1 13 [. 116 128 .. 116 128 .. 0.88 4 ? 0.1 0.1 4.9 4.1e+04 2 13 .. 231 242 .. 230 242 .. 0.89 5 ? 2.5 0.0 0.84 7e+03 2 13 .. 288 299 .. 287 299 .. 0.90 6 ? -0.8 0.0 9.1 7.7e+04 1 12 [. 344 355 .. 344 356 .. 0.79 7 ? 5.5 0.1 0.089 7.5e+02 13 24 .] 389 400 .. 375 400 .. 0.87 8 ? 4.4 0.0 0.21 1.8e+03 1 16 [. 401 416 .. 401 418 .. 0.88 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 5 GALA_LRR 15 aNtsLtSLdl 24 aN+ Lt L+l sp|P29315|RINI_RAT 49 ANPALTELSL 58 79******86 PP == domain 2 score: 1.6 bits; conditional E-value: 1.6 GALA_LRR 2 nNaIGdaGAr 11 N++GdaG+ sp|P29315|RINI_RAT 60 TNELGDAGVG 69 599*****95 PP == domain 3 score: 1.5 bits; conditional E-value: 1.7 GALA_LRR 1 snNaIGdaGArAL 13 ++N +Gd+G ++L sp|P29315|RINI_RAT 116 NDNPLGDEGLKLL 128 5799*****9987 PP == domain 4 score: 0.1 bits; conditional E-value: 4.9 GALA_LRR 2 nNaIGdaGArAL 13 N +G+ G++AL sp|P29315|RINI_RAT 231 SNKLGNTGIAAL 242 599********9 PP == domain 5 score: 2.5 bits; conditional E-value: 0.84 GALA_LRR 2 nNaIGdaGArAL 13 +N++ d+GA++L sp|P29315|RINI_RAT 288 GNELKDEGAQLL 299 79999*****98 PP == domain 6 score: -0.8 bits; conditional E-value: 9.1 GALA_LRR 1 snNaIGdaGArA 12 s N +Gd G+ sp|P29315|RINI_RAT 344 SSNPLGDSGVVE 355 5699*****965 PP == domain 7 score: 5.5 bits; conditional E-value: 0.089 GALA_LRR 13 LAaNtsLtSLdl 24 L aN+sL+ Ldl sp|P29315|RINI_RAT 389 LLANRSLRELDL 400 6778*******7 PP == domain 8 score: 4.4 bits; conditional E-value: 0.21 GALA_LRR 1 snNaIGdaGArALAaN 16 snN++Gd G+ L ++ sp|P29315|RINI_RAT 401 SNNCMGDNGVLQLLES 416 89********999765 PP >> sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 9.4 7.9e+04 18 24 .] 170 176 .. 165 176 .. 0.84 2 ? 0.0 0.0 5 4.2e+04 5 15 .. 182 192 .. 178 194 .. 0.84 3 ? 8.3 0.1 0.012 97 3 24 .] 239 260 .. 238 260 .. 0.94 4 ? 3.3 0.0 0.44 3.7e+03 4 24 .] 265 286 .. 262 286 .. 0.86 5 ? -0.9 0.0 9.5 8e+04 2 10 .. 314 322 .. 313 322 .. 0.85 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 9.4 GALA_LRR 18 sLtSLdl 24 +L+SL+l sp|Q17R01|FXL14_BOVIN 170 RLKSLNL 176 8****97 PP == domain 2 score: 0.0 bits; conditional E-value: 5 GALA_LRR 5 IGdaGArALAa 15 ++d G+ +LA+ sp|Q17R01|FXL14_BOVIN 182 LSDVGIGHLAG 192 799*******7 PP == domain 3 score: 8.3 bits; conditional E-value: 0.012 GALA_LRR 3 NaIGdaGArALAaNtsLtSLdl 24 ++I+daG +L+ +sL+SL+l sp|Q17R01|FXL14_BOVIN 239 GGISDAGLLHLSHMGSLRSLNL 260 69******************97 PP == domain 4 score: 3.3 bits; conditional E-value: 0.44 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+d G+ +LA + +L Ld+ sp|Q17R01|FXL14_BOVIN 265 NISDTGIMHLAMgSLRLSGLDV 286 59**********8888888887 PP == domain 5 score: -0.9 bits; conditional E-value: 9.5 GALA_LRR 2 nNaIGdaGA 10 + I+d+G+ sp|Q17R01|FXL14_BOVIN 314 SCHISDDGI 322 499****96 PP >> sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 0.0 9.4 7.9e+04 18 24 .] 170 176 .. 165 176 .. 0.84 2 ? 0.0 0.0 5 4.2e+04 5 15 .. 182 192 .. 178 194 .. 0.84 3 ? 8.3 0.1 0.012 97 3 24 .] 239 260 .. 238 260 .. 0.94 4 ? 3.3 0.0 0.44 3.7e+03 4 24 .] 265 286 .. 262 286 .. 0.86 5 ? -0.9 0.0 9.5 8e+04 2 10 .. 314 322 .. 313 322 .. 0.85 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 9.4 GALA_LRR 18 sLtSLdl 24 +L+SL+l sp|Q8BID8|FXL14_MOUSE 170 RLKSLNL 176 8****97 PP == domain 2 score: 0.0 bits; conditional E-value: 5 GALA_LRR 5 IGdaGArALAa 15 ++d G+ +LA+ sp|Q8BID8|FXL14_MOUSE 182 LSDVGIGHLAG 192 799*******7 PP == domain 3 score: 8.3 bits; conditional E-value: 0.012 GALA_LRR 3 NaIGdaGArALAaNtsLtSLdl 24 ++I+daG +L+ +sL+SL+l sp|Q8BID8|FXL14_MOUSE 239 GGISDAGLLHLSHMGSLRSLNL 260 69******************97 PP == domain 4 score: 3.3 bits; conditional E-value: 0.44 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+d G+ +LA + +L Ld+ sp|Q8BID8|FXL14_MOUSE 265 NISDTGIMHLAMgSLRLSGLDV 286 59**********8888888887 PP == domain 5 score: -0.9 bits; conditional E-value: 9.5 GALA_LRR 2 nNaIGdaGA 10 + I+d+G+ sp|Q8BID8|FXL14_MOUSE 314 SCHISDDGI 322 499****96 PP >> sp|Q9FE83|SKIP2_ARATH F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.1 0.2 1.1 9.2e+03 12 23 .. 232 243 .. 231 244 .. 0.89 2 ? 2.8 0.0 0.63 5.3e+03 2 9 .. 325 332 .. 324 334 .. 0.84 3 ? 5.3 0.0 0.1 8.8e+02 2 22 .. 401 422 .. 400 424 .. 0.77 Alignments for each domain: == domain 1 score: 2.1 bits; conditional E-value: 1.1 GALA_LRR 12 ALAaNtsLtSLd 23 +LA+ ++L++L sp|Q9FE83|SKIP2_ARATH 232 LLATTRTLKTLK 243 79********97 PP == domain 2 score: 2.8 bits; conditional E-value: 0.63 GALA_LRR 2 nNaIGdaG 9 N+IGd+G sp|Q9FE83|SKIP2_ARATH 325 TNRIGDEG 332 59*****9 PP == domain 3 score: 5.3 bits; conditional E-value: 0.1 GALA_LRR 2 nNaIGdaGArALAa.NtsLtSL 22 ++ ++d+G++ALA ++ L+ L sp|Q9FE83|SKIP2_ARATH 401 GCPVSDRGIEALAVgCPNLVKL 422 6899*********666666665 PP >> sp|Q91VI7|RINI_MOUSE Ribonuclease inhibitor OS=Mus musculus GN=Rnh1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.1 5 4.2e+04 15 24 .] 49 58 .. 49 58 .. 0.89 2 ? 3.4 0.0 0.42 3.5e+03 1 13 [. 116 128 .. 116 128 .. 0.88 3 ? 4.4 0.2 0.2 1.7e+03 1 13 [. 230 242 .. 230 242 .. 0.91 4 ? 1.8 0.0 1.4 1.2e+04 2 13 .. 288 299 .. 287 299 .. 0.87 5 ? 4.4 0.0 0.2 1.7e+03 1 13 [. 344 356 .. 344 356 .. 0.88 6 ? 4.6 0.4 0.18 1.5e+03 13 24 .] 389 400 .. 386 400 .. 0.87 7 ? 1.8 0.0 1.4 1.2e+04 1 15 [. 401 415 .. 401 417 .. 0.87 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 5 GALA_LRR 15 aNtsLtSLdl 24 aN+ Lt L+l sp|Q91VI7|RINI_MOUSE 49 ANPALTELSL 58 79******86 PP == domain 2 score: 3.4 bits; conditional E-value: 0.42 GALA_LRR 1 snNaIGdaGArAL 13 ++N +GdaG ++L sp|Q91VI7|RINI_MOUSE 116 NDNPMGDAGLKLL 128 589******9987 PP == domain 3 score: 4.4 bits; conditional E-value: 0.2 GALA_LRR 1 snNaIGdaGArAL 13 s N +G+aG++AL sp|Q91VI7|RINI_MOUSE 230 SSNKLGNAGIAAL 242 569*********9 PP == domain 4 score: 1.8 bits; conditional E-value: 1.4 GALA_LRR 2 nNaIGdaGArAL 13 N++ d+GAr+L sp|Q91VI7|RINI_MOUSE 288 SNELKDEGARLL 299 48999*****98 PP == domain 5 score: 4.4 bits; conditional E-value: 0.2 GALA_LRR 1 snNaIGdaGArAL 13 s N +Gd+G++ L sp|Q91VI7|RINI_MOUSE 344 SSNPLGDEGVQEL 356 5699*******98 PP == domain 6 score: 4.6 bits; conditional E-value: 0.18 GALA_LRR 13 LAaNtsLtSLdl 24 L aN+sL+ Ldl sp|Q91VI7|RINI_MOUSE 389 LLANRSLRELDL 400 6788*******7 PP == domain 7 score: 1.8 bits; conditional E-value: 1.4 GALA_LRR 1 snNaIGdaGArALAa 15 snN++G G+ L + sp|Q91VI7|RINI_MOUSE 401 SNNCMGGPGVLQLLE 415 89********99876 PP >> sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 9.9 8.3e+04 18 24 .] 170 176 .. 165 176 .. 0.84 2 ? -0.1 0.0 5.3 4.5e+04 5 15 .. 182 192 .. 178 194 .. 0.84 3 ? 8.2 0.1 0.012 1e+02 3 24 .] 239 260 .. 238 260 .. 0.94 4 ? 3.3 0.0 0.47 3.9e+03 4 24 .] 265 286 .. 262 286 .. 0.86 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 9.9 GALA_LRR 18 sLtSLdl 24 +L+SL+l sp|Q8N1E6|FXL14_HUMAN 170 RLKSLNL 176 8****97 PP == domain 2 score: -0.1 bits; conditional E-value: 5.3 GALA_LRR 5 IGdaGArALAa 15 ++d G+ +LA+ sp|Q8N1E6|FXL14_HUMAN 182 LSDVGIGHLAG 192 799*******7 PP == domain 3 score: 8.2 bits; conditional E-value: 0.012 GALA_LRR 3 NaIGdaGArALAaNtsLtSLdl 24 ++I+daG +L+ +sL+SL+l sp|Q8N1E6|FXL14_HUMAN 239 GGISDAGLLHLSHMGSLRSLNL 260 69******************97 PP == domain 4 score: 3.3 bits; conditional E-value: 0.47 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+d G+ +LA + +L Ld+ sp|Q8N1E6|FXL14_HUMAN 265 NISDTGIMHLAMgSLRLSGLDV 286 59**********8888888887 PP >> sp|Q4UNE4|Y063_RICFE Putative ankyrin repeat protein RF_0063 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.64 5.4e+03 10 23 .. 42 55 .. 42 56 .. 0.84 2 ? 10.2 0.5 0.0029 24 5 15 .. 61 71 .. 61 72 .. 0.94 3 ? 2.7 0.0 0.69 5.8e+03 10 23 .. 70 83 .. 70 84 .. 0.89 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.64 GALA_LRR 10 ArALAaNtsLtSLd 23 A+AL +N+sL+ L+ sp|Q4UNE4|Y063_RICFE 42 AAALKDNKSLKYLN 55 89********8555 PP == domain 2 score: 10.2 bits; conditional E-value: 0.0029 GALA_LRR 5 IGdaGArALAa 15 IG++GArALA+ sp|Q4UNE4|Y063_RICFE 61 IGEEGARALAE 71 9*********6 PP == domain 3 score: 2.7 bits; conditional E-value: 0.69 GALA_LRR 10 ArALAaNtsLtSLd 23 A+AL +N sL+ L sp|Q4UNE4|Y063_RICFE 70 AEALKDNESLKELY 83 89********9995 PP >> sp|Q7MX82|HUTI_PORGI Imidazolonepropionase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=hutI PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.2 0.0005 4.2 4 22 .. 283 301 .. 283 302 .. 0.82 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.0005 GALA_LRR 4 aIGdaGArALAaNtsLtSL 22 +I+daG++ALA++ + ++L sp|Q7MX82|HUTI_PORGI 283 RISDAGIKALAESNTVATL 301 7***********7665555 PP >> sp|Q14BP6|YV012_MOUSE Leucine-rich repeat-containing protein LOC400891 homolog OS=Mus musculus PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 0.0 0.023 1.9e+02 4 15 .. 88 99 .. 85 103 .. 0.87 2 ? 1.9 0.4 1.2 1e+04 8 15 .. 120 127 .. 113 127 .. 0.83 3 ? 3.5 0.1 0.38 3.2e+03 3 12 .. 143 152 .. 141 153 .. 0.88 4 ? 5.4 0.4 0.099 8.3e+02 2 15 .. 170 183 .. 169 196 .. 0.81 5 ? 3.6 0.1 0.37 3.1e+03 14 24 .] 214 224 .. 214 224 .. 0.94 6 ? 1.6 0.2 1.6 1.3e+04 1 12 [. 253 264 .. 253 268 .. 0.84 7 ? 3.4 0.0 0.42 3.6e+03 1 13 [. 281 293 .. 281 295 .. 0.86 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.023 GALA_LRR 4 aIGdaGArALAa 15 ++G+ G+rALA+ sp|Q14BP6|YV012_MOUSE 88 GLGPQGVRALAS 99 79*********7 PP == domain 2 score: 1.9 bits; conditional E-value: 1.2 GALA_LRR 8 aGArALAa 15 aGA+ALA+ sp|Q14BP6|YV012_MOUSE 120 AGAEALAD 127 9******6 PP == domain 3 score: 3.5 bits; conditional E-value: 0.38 GALA_LRR 3 NaIGdaGArA 12 N IG+aG +A sp|Q14BP6|YV012_MOUSE 143 NQIGAAGLQA 152 99******98 PP == domain 4 score: 5.4 bits; conditional E-value: 0.099 GALA_LRR 2 nNaIGdaGArALAa 15 +N++ + +A++LAa sp|Q14BP6|YV012_MOUSE 170 GNRLEEQAAQHLAA 183 58888888888886 PP == domain 5 score: 3.6 bits; conditional E-value: 0.37 GALA_LRR 14 AaNtsLtSLdl 24 A+Nt Lt L+l sp|Q14BP6|YV012_MOUSE 214 AENTGLTELNL 224 89********7 PP == domain 6 score: 1.6 bits; conditional E-value: 1.6 GALA_LRR 1 snNaIGdaGArA 12 s+N+ Gd GA A sp|Q14BP6|YV012_MOUSE 253 SHNGFGDSGASA 264 68999**99977 PP == domain 7 score: 3.4 bits; conditional E-value: 0.42 GALA_LRR 1 snNaIGdaGArAL 13 +nN+I+ GA L sp|Q14BP6|YV012_MOUSE 281 RNNRISVSGALKL 293 79********755 PP >> sp|B2RLA8|HUTI_PORG3 Imidazolonepropionase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.2 0.0005 4.2 4 22 .. 283 301 .. 283 302 .. 0.82 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.0005 GALA_LRR 4 aIGdaGArALAaNtsLtSL 22 +I+daG++ALA++ + ++L sp|B2RLA8|HUTI_PORG3 283 RISDAGIKALAESNTVATL 301 7***********7665555 PP >> sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 0.0022 18 4 24 .] 388 409 .. 385 409 .. 0.93 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.0022 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+d G+++LA +t L+SLd+ sp|Q9UJT9|FBXL7_HUMAN 388 GITDHGVEYLAKnCTKLKSLDI 409 8*******************96 PP >> sp|Q5JTW2|CEP78_HUMAN Centrosomal protein of 78 kDa OS=Homo sapiens GN=CEP78 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.0 0.035 3e+02 2 17 .. 237 252 .. 236 253 .. 0.87 2 ? 6.2 0.4 0.054 4.6e+02 11 24 .] 278 291 .. 265 291 .. 0.87 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.035 GALA_LRR 2 nNaIGdaGArALAaNt 17 n IGd GA+A+A++ sp|Q5JTW2|CEP78_HUMAN 237 NTLIGDLGACAFADSL 252 678**********986 PP == domain 2 score: 6.2 bits; conditional E-value: 0.054 GALA_LRR 11 rALAaNtsLtSLdl 24 +AL +Nt+L+ Ld+ sp|Q5JTW2|CEP78_HUMAN 278 EALETNTTLVVLDI 291 58999****99995 PP >> sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.1 0.00092 7.8 1 13 [. 139 151 .. 139 153 .. 0.94 2 ? 0.2 0.0 4.4 3.7e+04 4 13 .. 150 159 .. 150 160 .. 0.85 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00092 GALA_LRR 1 snNaIGdaGArAL 13 +nN+I ++GA+AL sp|P0C282|SAP18_ORYSJ 139 RNNRIHERGAQAL 151 79**********9 PP == domain 2 score: 0.2 bits; conditional E-value: 4.4 GALA_LRR 4 aIGdaGArAL 13 a+G +G+rA+ sp|P0C282|SAP18_ORYSJ 150 ALGIEGVRAF 159 5799****97 PP >> sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.0 0.015 1.2e+02 4 24 .] 252 272 .. 251 272 .. 0.95 2 ? 2.0 0.0 1.2 9.9e+03 4 24 .] 277 298 .. 277 298 .. 0.85 3 ? 5.6 0.5 0.087 7.3e+02 16 24 .] 317 325 .. 315 325 .. 0.92 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.015 GALA_LRR 4 aIGdaGArALAaNtsLtSLdl 24 +I+d+G+ + A + L SL+l sp|Q8LB33|FB330_ARATH 252 NISDEGIGHIAKCNKLESLNL 272 59******************7 PP == domain 2 score: 2.0 bits; conditional E-value: 1.2 GALA_LRR 4 aIGdaGArALAa.NtsLtSLdl 24 +I+daG+ A+ +tsL L+l sp|Q8LB33|FB330_ARATH 277 RITDAGVNTIANsCTSLEFLSL 298 79*****999999999988865 PP == domain 3 score: 5.6 bits; conditional E-value: 0.087 GALA_LRR 16 NtsLtSLdl 24 +t+Lt+Ld+ sp|Q8LB33|FB330_ARATH 317 STTLTTLDV 325 8*******8 PP >> sp|Q0P4D1|AMN1_DANRE Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.9 0.0 0.0075 64 2 16 .. 116 130 .. 115 139 .. 0.82 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0075 GALA_LRR 2 nNaIGdaGArALAaN 16 + a++d G++ALA++ sp|Q0P4D1|AMN1_DANRE 116 CTAVTDSGIQALARH 130 6799*********93 PP >> sp|P17053|G168_PARPR G surface protein, allelic form 168 OS=Paramecium primaurelia GN=168G PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 3 2.5e+04 6 23 .. 1109 1126 .. 1104 1127 .. 0.84 2 ? 2.9 0.0 0.6 5e+03 6 23 .. 1182 1199 .. 1182 1200 .. 0.91 3 ? 2.9 0.0 0.6 5e+03 6 23 .. 1255 1272 .. 1255 1273 .. 0.91 4 ? 2.9 0.0 0.6 5e+03 6 23 .. 1328 1345 .. 1328 1346 .. 0.91 5 ? 2.9 0.0 0.6 5e+03 6 23 .. 1401 1418 .. 1401 1419 .. 0.91 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 3 GALA_LRR 6 GdaGArALAaNtsLtSLd 23 + aG +A+++++ Lt d sp|P17053|G168_PARPR 1109 STAGTCAWSGSACLTVVD 1126 679************877 PP == domain 2 score: 2.9 bits; conditional E-value: 0.6 GALA_LRR 6 GdaGArALAaNtsLtSLd 23 +daG +A+++++ Lt d sp|P17053|G168_PARPR 1182 SDAGLCAWSGSACLTVVD 1199 69*************877 PP == domain 3 score: 2.9 bits; conditional E-value: 0.6 GALA_LRR 6 GdaGArALAaNtsLtSLd 23 +daG +A+++++ Lt d sp|P17053|G168_PARPR 1255 SDAGLCAWSGSACLTVVD 1272 69*************877 PP == domain 4 score: 2.9 bits; conditional E-value: 0.6 GALA_LRR 6 GdaGArALAaNtsLtSLd 23 +daG +A+++++ Lt d sp|P17053|G168_PARPR 1328 SDAGLCAWSGSACLTVVD 1345 69*************877 PP == domain 5 score: 2.9 bits; conditional E-value: 0.6 GALA_LRR 6 GdaGArALAaNtsLtSLd 23 +daG +A+++++ Lt d sp|P17053|G168_PARPR 1401 SDAGLCAWSGSACLTVVD 1418 69*************877 PP >> sp|Q0C5F9|RLMH_HYPNA Ribosomal RNA large subunit methyltransferase H OS=Hyphomonas neptunium (strain ATCC 15444) GN= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.1 0.0014 12 1 15 [. 46 60 .. 46 63 .. 0.90 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.0014 GALA_LRR 1 snNaIGdaGArALAa 15 s+++++++GAr+LA+ sp|Q0C5F9|RLMH_HYPNA 46 SGGGMDAEGARLLAR 60 789***********8 PP >> sp|Q95VZ3|CARML_DICDI Protein CARMIL OS=Dictyostelium discoideum GN=carmil PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 7.4 6.2e+04 1 14 [. 277 290 .. 277 291 .. 0.87 2 ? 7.4 0.1 0.023 1.9e+02 2 15 .. 451 464 .. 450 464 .. 0.93 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 7.4 GALA_LRR 1 snNaIGdaGArALA 14 snN I d G A++ sp|Q95VZ3|CARML_DICDI 277 SNNQIEDKGMTAFS 290 89*******99875 PP == domain 2 score: 7.4 bits; conditional E-value: 0.023 GALA_LRR 2 nNaIGdaGArALAa 15 nN +G aGAr+LA+ sp|Q95VZ3|CARML_DICDI 451 NNDLGIAGARMLAS 464 89***********6 PP >> sp|Q6IRU7|CEP78_MOUSE Centrosomal protein of 78 kDa OS=Mus musculus GN=Cep78 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.1 4.8 4.1e+04 13 24 .] 149 160 .. 147 160 .. 0.88 2 ? 7.4 0.0 0.022 1.9e+02 2 17 .. 242 257 .. 241 258 .. 0.87 3 ? 5.8 0.2 0.074 6.2e+02 11 24 .] 283 296 .. 270 296 .. 0.88 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 4.8 GALA_LRR 13 LAaNtsLtSLdl 24 L+ +tsL+ L+l sp|Q6IRU7|CEP78_MOUSE 149 LSKSTSLVHLSL 160 789******986 PP == domain 2 score: 7.4 bits; conditional E-value: 0.022 GALA_LRR 2 nNaIGdaGArALAaNt 17 n IGd GA A+A++ sp|Q6IRU7|CEP78_MOUSE 242 NTLIGDQGASAFADSL 257 678**********986 PP == domain 3 score: 5.8 bits; conditional E-value: 0.074 GALA_LRR 11 rALAaNtsLtSLdl 24 +AL +N++L+ Ld+ sp|Q6IRU7|CEP78_MOUSE 283 EALETNRTLVVLDI 296 58999999999995 PP >> sp|Q7RTR0|NALP9_HUMAN NACHT, LRR and PYD domains-containing protein 9 OS=Homo sapiens GN=NLRP9 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.53 4.5e+03 1 13 [. 864 876 .. 864 876 .. 0.89 2 ? 5.4 0.1 0.095 8e+02 5 24 .] 902 920 .. 899 920 .. 0.80 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.53 GALA_LRR 1 snNaIGdaGArAL 13 ++N+IGd G+r L sp|Q7RTR0|NALP9_HUMAN 864 GHNEIGDTGVRQL 876 579*******987 PP == domain 2 score: 5.4 bits; conditional E-value: 0.095 GALA_LRR 5 IGdaGArALAaNtsLtSLdl 24 ++d +A++ A ++L+SL+l sp|Q7RTR0|NALP9_HUMAN 902 CDDIAAALIAC-KTLRSLNL 920 66777888887.*******7 PP >> sp|B2SCY7|SYH_BRUA1 Histidine--tRNA ligase OS=Brucella abortus (strain S19) GN=hisS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|B2SCY7|SYH_BRUA1 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|B2SCY7|SYH_BRUA1 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|Q2YIH9|SYH_BRUA2 Histidine--tRNA ligase OS=Brucella abortus (strain 2308) GN=hisS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|Q2YIH9|SYH_BRUA2 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|Q2YIH9|SYH_BRUA2 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|Q579Q8|SYH_BRUAB Histidine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941) GN=hisS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|Q579Q8|SYH_BRUAB 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|Q579Q8|SYH_BRUAB 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|A5VTT4|SYH_BRUO2 Histidine--tRNA ligase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=hisS PE=3 S # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|A5VTT4|SYH_BRUO2 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|A5VTT4|SYH_BRUO2 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|C0RKC7|SYH_BRUMB Histidine--tRNA ligase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hisS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|C0RKC7|SYH_BRUMB 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|C0RKC7|SYH_BRUMB 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|Q8YB45|SYH_BRUME Histidine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|Q8YB45|SYH_BRUME 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|Q8YB45|SYH_BRUME 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|A9WXP3|SYH_BRUSI Histidine--tRNA ligase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hisS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.0 2.4 2.1e+04 6 15 .. 208 217 .. 206 221 .. 0.83 2 ? 8.3 0.0 0.011 95 2 15 .. 265 278 .. 264 279 .. 0.92 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.4 GALA_LRR 6 GdaGArALAa 15 G++G+r+L + sp|A9WXP3|SYH_BRUSI 208 GPEGVRLLLG 217 99*****976 PP == domain 2 score: 8.3 bits; conditional E-value: 0.011 GALA_LRR 2 nNaIGdaGArALAa 15 +Na G++G++ LA+ sp|A9WXP3|SYH_BRUSI 265 GNAKGEEGVQELAD 278 89***********7 PP >> sp|Q98KP0|COBS_RHILO Cobalamin synthase OS=Rhizobium loti (strain MAFF303099) GN=cobS PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 1.1 0.19 1.6e+03 4 20 .. 70 85 .. 70 86 .. 0.86 2 ? 8.6 0.1 0.0092 77 1 16 [. 115 130 .. 115 131 .. 0.89 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 4 aIGdaGArALAaNtsLt 20 a+G+a+A AL a t ++ sp|Q98KP0|COBS_RHILO 70 AMGPAAALALVA-TVIA 85 69********99.8776 PP == domain 2 score: 8.6 bits; conditional E-value: 0.0092 GALA_LRR 1 snNaIGdaGArALAaN 16 ++ +IG+ GA ALA + sp|Q98KP0|COBS_RHILO 115 RDSRIGAYGAMALALS 130 578***********86 PP >> sp|Q9D3W5|LRC71_MOUSE Leucine-rich repeat-containing protein 71 OS=Mus musculus GN=Lrrc71 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.1 0.19 1.6e+03 1 13 [. 228 240 .. 228 243 .. 0.91 2 ? 3.8 0.7 0.32 2.7e+03 15 24 .] 250 259 .. 250 259 .. 0.91 3 ? 4.6 0.0 0.17 1.5e+03 3 15 .. 262 274 .. 260 278 .. 0.85 4 ? 0.3 0.0 4.1 3.5e+04 2 15 .. 289 302 .. 288 302 .. 0.88 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.19 GALA_LRR 1 snNaIGdaGArAL 13 +nN+I d GA++L sp|Q9D3W5|LRC71_MOUSE 228 RNNNINDHGAQLL 240 79**********9 PP == domain 2 score: 3.8 bits; conditional E-value: 0.32 GALA_LRR 15 aNtsLtSLdl 24 +N++L+SL+l sp|Q9D3W5|LRC71_MOUSE 250 SNRTLVSLNL 259 59*******7 PP == domain 3 score: 4.6 bits; conditional E-value: 0.17 GALA_LRR 3 NaIGdaGArALAa 15 N IGd GA + A+ sp|Q9D3W5|LRC71_MOUSE 262 NHIGDVGAGYIAD 274 9*******99886 PP == domain 4 score: 0.3 bits; conditional E-value: 4.1 GALA_LRR 2 nNaIGdaGArALAa 15 +N I d GA LA+ sp|Q9D3W5|LRC71_MOUSE 289 HNHIQDKGALKLAE 302 699*******9995 PP >> sp|P33076|C2TA_HUMAN MHC class II transactivator OS=Homo sapiens GN=CIITA PE=1 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 0.0 0.57 4.8e+03 3 15 .. 997 1009 .. 995 1010 .. 0.85 2 ? 5.7 0.0 0.075 6.4e+02 2 16 .. 1081 1095 .. 1080 1097 .. 0.86 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.57 GALA_LRR 3 NaIGdaGArALAa 15 N IGd+G+ L+a sp|P33076|C2TA_HUMAN 997 NKIGDEGVSQLSA 1009 99******99987 PP == domain 2 score: 5.7 bits; conditional E-value: 0.075 GALA_LRR 2 nNaIGdaGArALAaN 16 +N ++aGA+ LAa+ sp|P33076|C2TA_HUMAN 1081 YNKFTAAGAQQLAAS 1095 577899********8 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (24 nodes) Target sequences: 539165 (191456931 residues) Passed MSV filter: 14431 (0.0267655); expected 10783.3 (0.02) Passed bias filter: 10223 (0.0189608); expected 10783.3 (0.02) Passed Vit filter: 838 (0.00155426); expected 539.2 (0.001) Passed Fwd filter: 110 (0.000204019); expected 5.4 (1e-05) Initial search space (Z): 539165 [actual number of targets] Domain search space (domZ): 64 [number of targets reported over threshold] # CPU time: 5.12u 0.17s 00:00:05.29 Elapsed: 00:00:02.19 # Mc/sec: 2098.16 //