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{"sheet":"IS1","index":0,"n_rows":120,"n_cols":10,"rows_kept":120,"cut":false,"hidden":false,"merged":[]}
["ID","Name","Entity ID","Team","# Predicted SNVs","# True Positives","# False Positives","Recall","Precision","F-score"]
[2318876.0,"Strelka Test","syn2318875","SMC_Admins",3312.0,2983.0,329.0,0.84337,0.900664,0.871076]
[2319000.0,"varscan-default-params","syn2318999","SMC_Admins",28898.0,3487.0,25411.0,0.985864,0.120666,0.215015]
[2321884.0,"varscan-gce","syn2321883","SMC_Admins",31824.0,3482.0,28342.0,0.98445,0.109414,0.19694]
[2322311.0,"Varscan.set1.test","syn2313233","SMC_Admins",35088.0,3516.0,31572.0,0.994063,0.100205,0.182058]
[2323876.0,"MuTect Default Test","syn2323875","SMC_Admins",5341.0,3449.0,1892.0,0.97512,0.645759,0.776977]
[2340887.0,"museq4.0 run on synthetic challenge set1","syn2340886","Shah Lab",141392.0,3326.0,138066.0,0.940345,0.023523,0.045898]
[2341283.0,"P > 0.5 museq4.0 run on synthetic challenge set1","syn2341282","Shah Lab",51583.0,3289.0,48294.0,0.929884,0.063761,0.11934]
[2341286.0,"P > 0.7 museq4.0 run on synthetic challenge set1","syn2341285","Shah Lab",5336.0,3229.0,2107.0,0.912921,0.605135,0.727826]
[2341288.0,"P > 0.9 museq4.0 run on synthetic challenge set1","syn2341287","Shah Lab",3218.0,3042.0,176.0,0.860051,0.945308,0.900666]
[2341290.0,"P > 0.95 museq4.0 run on synthetic challenge set1","syn2341289","Shah Lab",2973.0,2914.0,59.0,0.823862,0.980155,0.895238]
[2341292.0,"P > 0.97 museq4.0 run on synthetic challenge set1","syn2341291","Shah Lab",2829.0,2805.0,24.0,0.793045,0.991516,0.881244]
[2341294.0,"P > 0.99 museq4.0 run on synthetic challenge set1","syn2341293","Shah Lab",2506.0,2498.0,8.0,0.706248,0.996808,0.826742]
[2341781.0,"radia","syn2341780","UCSC",3546.0,3126.0,420.0,0.8838,0.881557,0.882677]
[2342416.0,"Virmid Default Stringent","syn2342415","Virmid",4193.0,3409.0,784.0,0.963811,0.813022,0.882018]
[2342420.0,"Virmid Default Stringent","syn2342415","Virmid",4193.0,3409.0,784.0,0.963811,0.813022,0.882018]
[2342947.0,"dmut0.set1.0_0","syn2342946","DMUT",5318.0,3038.0,2280.0,0.85892,0.571267,0.686166]
[2342949.0,"dmut0.set1.1_0","syn2342948","DMUT",5409.0,3051.0,2358.0,0.862595,0.56406,0.682093]
[2343041.0,"LoFreq Somatic: beta-3-126-gf67a5de-dirty MB","syn2343040","LoFreq Somatic - GIS",6336.0,3425.0,2911.0,0.968335,0.540562,0.693811]
[2343043.0,"LoFreq Somatic: beta-3-126-gf67a5de-dirty S","syn2343042","LoFreq Somatic - GIS",4225.0,3389.0,836.0,0.958157,0.80213,0.873229]
[2343045.0,"LoFreq Somatic: beta-3-126-gf67a5de-dirty S MB","syn2343044","LoFreq Somatic - GIS",4153.0,3389.0,764.0,0.958157,0.816037,0.881404]
[2343047.0,"LoFreq Somatic: beta-3-126-gf67a5de-dirty","syn2343046","LoFreq Somatic - GIS",7820.0,3425.0,4395.0,0.968335,0.43798,0.603152]
[2343083.0,"MuTect - Stock","syn2343082","Broad SMC",3978.0,3431.0,547.0,0.970031,0.862494,0.913107]
[2343085.0,"MuTect - L10","syn2343084","Broad SMC",3478.0,3421.0,57.0,0.967204,0.983611,0.975339]
[2343122.0,"Virmid Qual > 23","syn2343121","Virmid",3647.0,3304.0,343.0,0.934125,0.90595,0.919822]
[2343149.0,"P > 0.8 museq4.0","syn2343148","Shah Lab",3761.0,3175.0,586.0,0.897653,0.84419,0.870101]
[2343151.0,"P > 0.85 museq4.0","syn2343150","Shah Lab",3439.0,3116.0,323.0,0.880973,0.906077,0.893349]
[2343153.0,"P > 0.87 museq4.0","syn2343152","Shah Lab",3347.0,3093.0,254.0,0.87447,0.924111,0.898605]
[2343155.0,"P > 0.89 museq4.0","syn2343154","Shah Lab",3254.0,3061.0,193.0,0.865423,0.940688,0.901487]
[2343157.0,"P > 0.91 museq4.0","syn2343156","Shah Lab",3170.0,3017.0,153.0,0.852983,0.951735,0.899657]
[2343159.0,"P > 0.92 museq4.0","syn2343158","Shah Lab",3127.0,2997.0,130.0,0.847328,0.958427,0.89946]
[2343161.0,"P > 0.93 museq4.0","syn2343160","Shah Lab",3074.0,2970.0,104.0,0.839695,0.966168,0.898502]
[2343173.0,"P > 0.89 no indel museq4.0","syn2343172","Shah Lab",3254.0,3061.0,193.0,0.865423,0.940688,0.901487]
[2343175.0,"P > 0.80 no indel museq4.0","syn2343174","Shah Lab",3761.0,3175.0,586.0,0.897653,0.84419,0.870101]
[2343360.0,"dmut0.set1.0_1","syn2343359","DMUT",3505.0,3335.0,170.0,0.942889,0.951498,0.947174]
[2343362.0,"dmut0.set1.0_2","syn2343361","DMUT",4644.0,3439.0,1205.0,0.972293,0.740525,0.840729]
[2343364.0,"dmut0.set1.0_3","syn2343363","DMUT",3547.0,3335.0,212.0,0.942889,0.940231,0.941558]
[2343366.0,"dmut0.set1.1_1","syn2343365","DMUT",3612.0,3329.0,283.0,0.941193,0.92165,0.931319]
[2343368.0,"dmut0.set1.1_2","syn2343367","DMUT",4930.0,3437.0,1493.0,0.971727,0.69716,0.811858]
[2343370.0,"dmut0.set1.1_3","syn2343369","DMUT",3634.0,3329.0,305.0,0.941193,0.91607,0.928462]
[2343372.0,"dmut0.set1.00_0","syn2343371","DMUT",5015.0,3038.0,1977.0,0.85892,0.605783,0.710477]
[2344738.0,"dmut0.set1.0_4","syn2344737","DMUT",3501.0,3335.0,166.0,0.942889,0.952585,0.947712]
[2344741.0,"dmut0.set1.00_1","syn2344740","DMUT",3574.0,3353.0,221.0,0.947979,0.938165,0.943046]
[2344743.0,"dmut0.set1.00_2","syn2344742","DMUT",4943.0,3449.0,1494.0,0.97512,0.697754,0.813443]
[2344745.0,"dmut0.set1.00_3","syn2344744","DMUT",3589.0,3353.0,236.0,0.947979,0.934244,0.941061]
[2344747.0,"dmut0.set1.00_4","syn2344746","DMUT",3570.0,3353.0,217.0,0.947979,0.939216,0.943577]
[2345011.0,"radia noblck","syn2345010","UCSC",5178.0,3211.0,1967.0,0.907831,0.620124,0.73689]
[2345388.0,"Dream_Set1_MuSE_Setting1","syn2345387","Wang-Wheeler-HGSC",5835.0,3003.0,2832.0,0.849025,0.514653,0.640845]
[2345390.0,"Dream_Set1_MuSE_Setting2","syn2345389","Wang-Wheeler-HGSC",4252.0,2104.0,2148.0,0.594854,0.494826,0.540249]
[2345392.0,"Dream_Set1_MuSE_Setting3","syn2345391","Wang-Wheeler-HGSC",3335.0,3015.0,320.0,0.852417,0.904048,0.877474]
[2345394.0,"Dream_Set1_MuSE_Setting4","syn2345393","Wang-Wheeler-HGSC",3247.0,2229.0,1018.0,0.630195,0.68648,0.657134]
[2345542.0,"Mutect_test","syn2345541","SLC_platform",3566.0,3358.0,208.0,0.949392,0.941671,0.945516]
[2346241.0,"nRex mpileup-gatk-ext","syn2346240","DellyTeam",3602.0,3415.0,187.0,0.965507,0.948084,0.956717]
[2346247.0,"mutect_1","syn2346246","SMC_Admins",7181.0,3437.0,3744.0,0.971727,0.478624,0.641351]
[2346287.0,"CARNAC_test1","syn2346286","Wang-Wheeler-HGSC",4797.0,3171.0,1626.0,0.896522,0.661038,0.760979]
[2346289.0,"CARNAC_test1","syn2346288","Wang-Wheeler-HGSC",4972.0,3194.0,1778.0,0.903025,0.642397,0.750735]
[2346654.0,"radia mxe=2","syn2341780","UCSC",3695.0,3138.0,557.0,0.887193,0.849256,0.86781]
[2346658.0,"LoFreq Somatic: beta-3-142-g3ec19ad S-dns1","syn2346657","LoFreq Somatic - GIS",3920.0,3384.0,536.0,0.956743,0.863265,0.907604]
[2346671.0,"nRex2 mpileup-gatk-ext","syn2346670","DellyTeam",3777.0,3439.0,338.0,0.972293,0.910511,0.940388]
[2346673.0,"SMuFin","syn2346672","Computational Genomics BSC",3376.0,3139.0,237.0,0.887475,0.929799,0.908144]
[2346677.0,"nRex3 mpileup-gatk-ext","syn2346676","DellyTeam",3491.0,3387.0,104.0,0.957591,0.970209,0.963859]
[2346987.0,"dmut0.set1.0_3c1","syn2346986","DMUT",3651.0,3340.0,311.0,0.944303,0.914818,0.929327]
[2346989.0,"dmut0.set1.0_4c1","syn2346988","DMUT",3608.0,3340.0,268.0,0.944303,0.925721,0.93492]
[2347326.0,"radia mxec=1","syn2341780","UCSC",5073.0,3154.0,1919.0,0.891716,0.621723,0.732636]
[2347347.0,"radia mntb=7","syn2341780","UCSC",6208.0,3177.0,3031.0,0.898219,0.511759,0.652027]
[2347360.0,"P > 0.9 using museq 2.0","syn2347359","Shah Lab",4025.0,3184.0,841.0,0.900198,0.791056,0.842105]
[2347362.0,"CARNAC_ORI_0.06","syn2347361","Wang-Wheeler-HGSC",4790.0,3171.0,1619.0,0.896522,0.662004,0.761619]
[2347364.0,"CARNAC_REMAP_0.06","syn2347363","Wang-Wheeler-HGSC",4970.0,3194.0,1776.0,0.903025,0.642656,0.750911]
[2347371.0,"CARNAC_ORI_0.08","syn2347370","Wang-Wheeler-HGSC",4782.0,3171.0,1611.0,0.896522,0.663112,0.762351]
[2347373.0,"CARNAC_REMAP_0.08","syn2347372","Wang-Wheeler-HGSC",4965.0,3194.0,1771.0,0.903025,0.643303,0.751353]
[2347387.0,"CARNAC_ORI_8_0.08","syn2347386","Wang-Wheeler-HGSC",3224.0,2934.0,290.0,0.829517,0.91005,0.867919]
[2347389.0,"CARNAC_REMAP_8_0.08","syn2347388","Wang-Wheeler-HGSC",3225.0,2959.0,266.0,0.836585,0.917519,0.875185]
[2347398.0,"CARNAC_ORI_10_0.06","syn2347397","Wang-Wheeler-HGSC",2712.0,2621.0,91.0,0.741023,0.966445,0.838854]
[2347400.0,"CARNAC_REMAP_10_0.06","syn2347399","Wang-Wheeler-HGSC",2715.0,2639.0,76.0,0.746113,0.972007,0.84421]
[2347438.0,"Strelka_hs_ng","syn2347437","MantaStrelka",3580.0,3003.0,577.0,0.849025,0.838827,0.843895]
[2347440.0,"Strelka_hs_ng_ns","syn2347439","MantaStrelka",4047.0,3004.0,1043.0,0.849307,0.742278,0.792194]
[2347443.0,"P > 0.78 museq4.2","syn2347442","Shah Lab",4530.0,3182.0,1348.0,0.899632,0.702428,0.788893]
[2347445.0,"P > 0.80 museq4.2","syn2347444","Shah Lab",4056.0,3172.0,884.0,0.896805,0.782051,0.835506]
[2347447.0,"P > 0.90 museq4.2","syn2347446","Shah Lab",3322.0,3052.0,270.0,0.862878,0.918724,0.889926]
[2347452.0,"P > 0.90 museq4.2 no INDL","syn2347451","Shah Lab",3322.0,3052.0,270.0,0.862878,0.918724,0.889926]
[2347458.0,"Dream_Set1_MuSE_Setting5","syn2347457","Wang-Wheeler-HGSC",4632.0,3271.0,1361.0,0.924795,0.706174,0.800832]
[2347460.0,"Dream_Set1_MuSE_Setting6","syn2347459","Wang-Wheeler-HGSC",4148.0,3271.0,877.0,0.924795,0.788573,0.851269]
[2347462.0,"Dream_Set1_MuSE_Setting7","syn2347461","Wang-Wheeler-HGSC",3438.0,3256.0,182.0,0.920554,0.947062,0.93362]
[2347464.0,"Dream_Set1_MuSE_Setting8","syn2347463","Wang-Wheeler-HGSC",3330.0,3256.0,74.0,0.920554,0.977778,0.948303]
[2347515.0,"dmut0.set1.0_4c2","syn2347514","DMUT",3542.0,3318.0,224.0,0.938083,0.936759,0.937421]
[2347517.0,"dmut0.set1.01_4","syn2347516","DMUT",3466.0,3335.0,131.0,0.942889,0.962204,0.952449]
[2347519.0,"dmut0.set1.01_4c2","syn2347518","DMUT",3500.0,3318.0,182.0,0.938083,0.948,0.943015]
[2347868.0,"CARNAC_ORI_10_0.02","syn2347397","Wang-Wheeler-HGSC",2712.0,2621.0,91.0,0.741023,0.966445,0.838854]
[2347884.0,"CARNAC_REMAP_10_0.02","syn2347399","Wang-Wheeler-HGSC",2715.0,2639.0,76.0,0.746113,0.972007,0.84421]
[2349441.0,"CARNAC_ORI_9_0.08","syn2349440","Wang-Wheeler-HGSC",2962.0,2793.0,169.0,0.789652,0.942944,0.859517]
[2349443.0,"CARNAC_REMAP_9_0.08","syn2349442","Wang-Wheeler-HGSC",2946.0,2808.0,138.0,0.793893,0.953157,0.866266]
[2349574.0,"draft 1","syn2349572","IGB-UCI",20358.0,3461.0,16897.0,0.978513,0.170007,0.289684]
[2349576.0,"P > 0.78 museq4.1_binom_germ","syn2349575","Shah Lab",4525.0,3179.0,1346.0,0.898784,0.702541,0.788638]
[2349578.0,"P > 0.8 museq4.1_binom_germ","syn2349577","Shah Lab",4051.0,3169.0,882.0,0.895957,0.782276,0.835266]
[2349580.0,"P > 0.89 museq4.1_binom_germ","syn2349579","Shah Lab",3372.0,3066.0,306.0,0.866836,0.909253,0.887538]
[2349582.0,"P > 0.9 museq4.1_binom_germ","syn2349581","Shah Lab",3318.0,3049.0,269.0,0.86203,0.918927,0.88957]
[2349584.0,"P > 0.89 museq4.0_germ","syn2349583","Shah Lab",3251.0,3058.0,193.0,0.864574,0.940634,0.901002]
[2349688.0,"P > 0.78 museq4.1_binom_germ_ind2pas","syn2349687","Shah Lab",5639.0,3372.0,2267.0,0.95335,0.597978,0.734961]
[2349782.0,"P > 0.78 museq4.1_binom_germ_ind2pas","syn2349781","Shah Lab",3758.0,3234.0,524.0,0.914334,0.860564,0.886635]
[2349784.0,"P > 0.9 museq4.1_binom_germ_ind2pas","syn2349781","Shah Lab",3758.0,3234.0,524.0,0.914334,0.860564,0.886635]
[2349896.0,"P > 0.89 museq4.0_germ_ind2pas","syn2349895","Shah Lab",3614.0,3244.0,370.0,0.917161,0.89762,0.907286]
[2350003.0,"P > 0.89 museq4.0_germ_ind2pas_ind5","syn2350000","Shah Lab",3474.0,3226.0,248.0,0.912072,0.928613,0.920268]
[2350177.0,"P > 0.78 museq4.1_binom_germ_ind2pas_ind5","syn2350174","Shah Lab",5047.0,3354.0,1693.0,0.948261,0.664553,0.781454]
[2350207.0,"P > 0.89 museq4.1_binom_germ_ind2pas_ind3","syn2350206","Shah Lab",3444.0,3221.0,223.0,0.910659,0.93525,0.92279]
[2350475.0,"P > 0.8 museq4.1_binom_germ_ind2pas_ind3","syn2350474","Shah Lab",4010.0,3343.0,667.0,0.945151,0.833666,0.885915]
[2350613.0,"P > 0.85 museq4.1_binom_germ_ind2pas_ind3","syn2350612","Shah Lab",3654.0,3283.0,371.0,0.928188,0.898467,0.913086]
[2350643.0,"P > 0.85 museq4.1_binom_germ_ind2pas_ind5","syn2350642","Shah Lab",3704.0,3288.0,416.0,0.929601,0.887689,0.908162]
[2350870.0,"dmut0.set1.01_4c3","syn2350869","DMUT",3534.0,3339.0,195.0,0.94402,0.944822,0.944421]
[2350872.0,"dmut0.set1.001_4","syn2350871","DMUT",3525.0,3353.0,172.0,0.947979,0.951206,0.949589]
[2350877.0,"germmatic","syn2350876","Germmatic team",11818.0,3395.0,8423.0,0.959853,0.287274,0.442201]
[2350879.0,"germmatic test2","syn2350878","Germmatic team",2468.0,1975.0,493.0,0.558383,0.800243,0.657785]
[2350970.0,"P > 0.89 museq4.1_binom_germ_ind2pas_ind3_1000","syn2350969","Shah Lab",3302.0,3170.0,132.0,0.89624,0.960024,0.927036]
[2350972.0,"P > 0.85 museq4.1_binom_germ_ind2pas_ind3_1000","syn2350971","Shah Lab",3474.0,3232.0,242.0,0.913769,0.93034,0.92198]
[2350974.0,"dmut0.set1.02_4","syn2350973","DMUT",3456.0,3335.0,121.0,0.942889,0.964988,0.953811]
[2350978.0,"P > 0.89 museq4.1_binom_germ_ind2pas_ind3_1000_dbsnp","syn2350977","Shah Lab",3278.0,3150.0,128.0,0.890585,0.960952,0.924431]
[2350979.0,"draft 2","syn2350975","IGB-UCI",4362.0,2985.0,1377.0,0.843936,0.684319,0.755792]
[2350981.0,"nRex4 mpileup-gatk-ext","syn2350980","DellyTeam",3608.0,3422.0,186.0,0.967487,0.948448,0.957873]
[2350983.0,"nRex5 mpileup-gatk-ext","syn2350982","DellyTeam",3606.0,3421.0,185.0,0.967204,0.948697,0.957861]
[2350992.0,"dmut0.set1.02_5","syn2350991","DMUT",3444.0,3335.0,109.0,0.942889,0.968351,0.955451]
[2350994.0,"dmut0.set1.02_6","syn2350993","DMUT",3446.0,3335.0,111.0,0.942889,0.967789,0.955177]

{"sheet":"IS2","index":1,"n_rows":72,"n_cols":10,"rows_kept":72,"cut":false,"hidden":false,"merged":[]}
["ID","Name","Entity ID","Team","# Predicted SNVs","# True Positives","# False Positives","Recall","Precision","F-score"]
[2357355.0,"Strelka Test","syn2357354","SMC_Admins",4247.0,3798.0,449.0,0.87899,0.89273,0.88675]
[2361924.0,"“mutect”_test","syn2361923","SMC_Admins",7314.0,4224.0,3090.0,0.97709,0.58065,0.77724]
[2361980.0,"varscan-default-hc","syn2361979","SMC_Admins",8122.0,4193.0,3929.0,0.97038,0.51651,0.74338]
[2361993.0,"varscan-default","syn2361992","SMC_Admins",27123.0,4257.0,22866.0,0.98519,0.15646,0.57109]
[2361996.0,"“mutect_test”","syn2361923","SMC_Admins",7314.0,4224.0,3090.0,0.97709,0.58065,0.77724]
[2363452.0,"ExactSNP full results","syn2363451","WEHI-Subread",163480.0,4200.0,159280.0,0.96969,0.02561,0.49766]
[2363454.0,"ExactSNP full results","syn2363451","WEHI-Subread",163480.0,4200.0,159280.0,0.96969,0.02561,0.49766]
[2363577.0,"MuTect - L10F","syn2363576","Broad SMC",4184.0,4150.0,34.0,0.96067,0.99273,0.97651]
[2363788.0,"ExactSNP-test1","syn2363451","WEHI-Subread",17173.0,752.0,16421.0,0.17399,0.04387,0.10889]
[2364661.0,"muTech-default","syn2364660","WEHI-Subread",7372.0,4224.0,3148.0,0.97709,0.57566,0.77497]
[2364663.0,"muTech-default","syn2364660","WEHI-Subread",7372.0,4224.0,3148.0,0.97709,0.57566,0.77497]
[2364695.0,"ExactSNP-test2","syn2364694","WEHI-Subread",4217.0,3667.0,550.0,0.84868,0.86797,0.85925]
[2366709.0,"dmut0.set2.0_5","syn2366708","DMUT",4127.0,3916.0,211.0,0.90629,0.94862,0.9277]
[2366711.0,"dmut0.set2.1_5","syn2366710","DMUT",6258.0,4097.0,2161.0,0.94794,0.65112,0.80131]
[2367174.0,"mutect_routine","syn2367173","SLC_platform",4968.0,4111.0,857.0,0.95049,0.8275,0.88869]
[2367176.0,"mutect_conta","syn2367175","SLC_platform",4247.0,4110.0,137.0,0.95049,0.9665,0.95888]
[2367178.0,"mutect_filters","syn2367177","SLC_platform",5501.0,4144.0,1357.0,0.95812,0.75406,0.85545]
[2367180.0,"mutect_filters","syn2367179","SLC_platform",4971.0,4114.0,857.0,0.95118,0.82761,0.88909]
[2367197.0,"Virmid Default","syn2367196","Virmid",5056.0,4106.0,950.0,0.95025,0.81129,0.88128]
[2367207.0,"Virmid Top 90","syn2367206","Virmid",4531.0,4036.0,495.0,0.93406,0.89022,0.91252]
[2367734.0,"nRex mpileup-gatk-exta","syn2346240","DellyTeam",4352.0,4146.0,206.0,0.95951,0.95332,0.9562]
[2367761.0,"LoFreq Somatic: beta-3-159 dba","syn2367760","LoFreq Somatic - GIS",4073.0,3939.0,134.0,0.91161,0.96644,0.93948]
[2368569.0,"dmut0.set2.1_5","syn2366710","DMUT",4254.0,3885.0,369.0,0.89912,0.913,0.90631]
[2368666.0,"mutq33","syn2368665","Team2014",3661.0,2405.0,1256.0,0.55599,0.65971,0.60619]
[2368734.0,"Dream_Set2_MuSE_Setting1","syn2368733","Wang-Wheeler-HGSC",4179.0,4084.0,95.0,0.94493,0.97711,0.9611]
[2368737.0,"Dream_Set2_MuSE_Setting2","syn2368735","Wang-Wheeler-HGSC",4139.0,4083.0,56.0,0.9447,0.98686,0.96559]
[2368745.0,"mut_nq","syn2368744","Team2014",7264.0,4224.0,3040.0,0.97709,0.58493,0.77923]
[2368931.0,"P > 0.8 museq4.2","syn2368930","Shah Lab",4244.0,3902.0,342.0,0.90282,0.91782,0.91112]
[2368934.0,"P > 0.9 museq4.2","syn2368933","Shah Lab",3890.0,3753.0,137.0,0.86835,0.96393,0.91656]
[2368936.0,"P > 0.8 museq4.0","syn2368935","Shah Lab",4319.0,3833.0,486.0,0.88686,0.88737,0.88717]
[2368938.0,"P > 0.9 museq4.0","syn2368937","Shah Lab",3915.0,3692.0,223.0,0.85423,0.94262,0.89864]
[2368940.0,"ExactSNP-test3","syn2368939","WEHI-Subread",3241.0,3096.0,145.0,0.71657,0.95262,0.83607]
[2368942.0,"ExactSNP-test4","syn2368939","WEHI-Subread",4522.0,228.0,4294.0,0.05275,0.04849,0.05159]
[2369002.0,"ST_test","syn2369001","Team2014",4187.0,3797.0,390.0,0.87876,0.90569,0.89293]
[2369029.0,"P > 0.9 museq4.2 noINDL","syn2369028","Shah Lab",3890.0,3753.0,137.0,0.86835,0.96393,0.91656]
[2369031.0,"P > 0.8 museq4.2 noINDL","syn2369030","Shah Lab",4244.0,3902.0,342.0,0.90282,0.91782,0.91112]
[2369033.0,"P > 0.8 museq4 noINDL","syn2369032","Shah Lab",4319.0,3833.0,486.0,0.88686,0.88737,0.88717]
[2369036.0,"P > 0.9 museq4 noINDL","syn2369035","Shah Lab",3915.0,3692.0,223.0,0.85423,0.94262,0.89864]
[2369164.0,"mytest","syn2369163","Team2014",2192.0,2033.0,159.0,0.47085,0.92489,0.69961]
[2369464.0,"ExactSNP-test5","syn2368939","WEHI-Subread",3104.0,3027.0,77.0,0.7006,0.97399,0.83806]
[2370233.0,"LoFreq Somatic: beta-3-186 b50 dbac","syn2370232","LoFreq Somatic - GIS",4218.0,4049.0,169.0,0.93707,0.95938,0.94862]
[2370447.0,"nRex mpileup-gatk-extb","syn2346240","DellyTeam",4096.0,4001.0,95.0,0.92596,0.97639,0.95151]
[2371127.0,"ExactSNP-test6","syn2368939","WEHI-Subread",4132.0,3774.0,358.0,0.87344,0.91504,0.89352]
[2373978.0,"P > 0.8 using museq 2.0 C10","syn2373977","Shah Lab",4449.0,4086.0,363.0,0.94563,0.91728,0.93213]
[2373983.0,"P > 0.8 using museq 2.0 C20","syn2373982","Shah Lab",4513.0,4105.0,408.0,0.95002,0.90774,0.92992]
[2373987.0,"P > 0.8 using museq 2.0 C30","syn2373986","Shah Lab",4583.0,4115.0,468.0,0.95234,0.89633,0.92522]
[2373989.0,"P > 0.9 using museq 2.0 C10","syn2373988","Shah Lab",4133.0,3951.0,182.0,0.91439,0.95482,0.9353]
[2373991.0,"P > 0.9 using museq 2.0 C20","syn2373990","Shah Lab",4197.0,3970.0,227.0,0.91879,0.94394,0.93247]
[2373993.0,"P > 0.9 using museq 2.0 C30","syn2373992","Shah Lab",4267.0,3980.0,287.0,0.9211,0.93111,0.92704]
[2374026.0,"P > 0.85 using museq 4.2 C10","syn2374025","Shah Lab",4289.0,4038.0,251.0,0.93452,0.94118,0.93812]
[2374028.0,"P > 0.95 using museq 4.2 C10","syn2374027","Shah Lab",3857.0,3766.0,91.0,0.87159,0.97658,0.92413]
[2374030.0,"P > 0.85 using museq 4.2 C20","syn2374029","Shah Lab",4353.0,4057.0,296.0,0.93892,0.93089,0.93557]
[2374055.0,"P > 0.82 using museq 4.2 C10","syn2374054","Shah Lab",4381.0,4067.0,314.0,0.94123,0.92735,0.93489]
[2374131.0,"P > 0.85 using museq 4.2 C05","syn2374129","Shah Lab",4325.0,4043.0,282.0,0.93545,0.93461,0.93512]
[2374905.0,"P > 0.85 using museq 4.2 strict","syn2374904","Shah Lab",4674.0,4034.0,640.0,0.93336,0.86142,0.89822]
[2375120.0,"nRex","syn2346240","DellyTeam",4231.0,4109.0,122.0,0.95095,0.97126,0.96118]
[2376066.0,"dmut0.set2.0_7","syn2376065","DMUT",4246.0,4074.0,172.0,0.94285,0.95909,0.95129]
[2383212.0,"P > 0.85 using museq 4.2 RF_C10","syn2383210","Shah Lab",4344.0,4061.0,283.0,0.93961,0.93397,0.93723]
[2383259.0,"P > 0.75 using museq 4.2 ADB_C10","syn2383257","Shah Lab",3456.0,3413.0,43.0,0.79014,0.98742,0.88914]
[2383694.0,"P > 0.7 using museq 4.2 ADB_C10","syn2383693","Shah Lab",4057.0,3873.0,184.0,0.89634,0.95548,0.92562]
[2383782.0,"P > 0.85 using museq 4.2 C10_CVG","syn2383781","Shah Lab",3459.0,3302.0,157.0,0.764,0.95439,0.8593]
[2384220.0,"LoFreq Somatic: beta-3-226 t-s5 n-s3p u1p","syn2384219","LoFreq Somatic - GIS",4108.0,4012.0,96.0,0.92851,0.9765,0.95269]
[2384257.0,"LoFreq Somatic: beta-3-226 t-a100 n-a3p u1p","syn2384256","LoFreq Somatic - GIS",4297.0,4100.0,197.0,0.94887,0.95284,0.95163]
[2384276.0,"LoFreq Somatic: beta-3-226 t-a5 n-a3p u01p","syn2384275","LoFreq Somatic - GIS",4057.0,3990.0,67.0,0.92342,0.98369,0.95357]
[2384828.0,"dmut0.set2.0_6","syn2384827","DMUT",3888.0,3790.0,98.0,0.87737,0.97429,0.92634]
[2385541.0,"CARNAC","syn2385540","Wang-Wheeler-HGSC",4356.0,3742.0,614.0,0.86627,0.8575,0.86288]
[2385557.0,"LoFreq Somatic: b-3-226 t-a100 n-a3p u-01p rc","syn2385556","LoFreq Somatic - GIS",4139.0,3972.0,167.0,0.91925,0.95912,0.93957]
[2385647.0,"VarScan_snv_test1","syn2385646","WashU",3557.0,3373.0,184.0,0.78066,0.94848,0.8646]
[2385689.0,"Dream_Set2_MuSE_Setting3","syn2385688","Wang-Wheeler-HGSC",4273.0,4150.0,123.0,0.9602,0.97152,0.96571]
[2385778.0,"VarScan_snv_test2","syn2385777","WashU",3941.0,3569.0,372.0,0.82578,0.90622,0.86569]
[2385780.0,"VarScan_snv_test3","syn2385779","WashU",5787.0,3975.0,1812.0,0.91971,0.68763,0.8033]

{"sheet":"IS3","index":2,"n_rows":69,"n_cols":10,"rows_kept":69,"cut":false,"hidden":false,"merged":[]}
["ID","Name","Entity ID","Team","# Predicted SNVs","# True Positives","# False Positives","Recall","Precision","F-score"]
[2405012.0,"stage3_ms4mi4mq20pq1_shimmer","syn2405011","TeamShimmer",5339.0,5023.0,316.0,0.63558,0.94081,0.7882]
[2410591.0,"VarScan_snv_mq10.hc.fpfilter","syn2410588","WashU",11286.0,6798.0,4488.0,0.86018,0.60234,0.73126]
[2420789.0,"mutect_routine","syn2420788","SLC_platform",7837.0,7186.0,651.0,0.90927,0.91693,0.9131]
[2420793.0,"mutect_noise","syn2420792","SLC_platform",7104.0,7061.0,43.0,0.89346,0.99395,0.9437]
[2425329.0,"varScan.snv.v2","syn2425328","WashU",7930.0,6980.0,950.0,0.88321,0.8802,0.88171]
[2426321.0,"mutect_filters","syn2426320","SLC_platform",8271.0,7277.0,994.0,0.92079,0.87982,0.90031]
[2426377.0,"mutect_match","syn2426376","SLC_platform",7841.0,7190.0,651.0,0.90978,0.91697,0.91338]
[2427156.0,"varScan.snv.v3","syn2427155","WashU",7713.0,6975.0,738.0,0.88258,0.90432,0.89345]
[2427350.0,"ss.fb.default","syn2427349","ss",4145.0,0.0,4145.0,0.0,0.0,0.0]
[2427522.0,"varScan.snv.v4","syn2427521","WashU",7373.0,6934.0,439.0,0.87739,0.94046,0.90892]
[2430887.0,"LoFreq Somatic: g1a6d65e","syn2430886","LoFreq Somatic - GIS",6759.0,6674.0,85.0,0.84449,0.98742,0.91596]
[2430956.0,"MuTect - Stock","syn2423113","Broad SMC",8630.0,7344.0,1286.0,0.92927,0.85098,0.89013]
[2431183.0,"varScan.snv.v5","syn2431182","WashU",7633.0,7034.0,599.0,0.89004,0.92152,0.90578]
[2431851.0,"varscan.snv.v5.pf","syn2431850","WashU",7356.0,7010.0,346.0,0.887,0.95296,0.91998]
[2436976.0,"varScan.snv.v5-sf","syn2436975","WashU",7573.0,7093.0,480.0,0.89751,0.93662,0.91706]
[2445117.0,"LoFreq Somatic: g1a6d65e t-a50","syn2445116","LoFreq Somatic - GIS",6950.0,6794.0,156.0,0.85967,0.97755,0.91861]
[2445210.0,"MuTectL100H","syn2445209","Broad SMC",7086.0,7005.0,81.0,0.88637,0.98857,0.93747]
[2445581.0,"VarDict_test1","syn2445580","AstraZeneca",6835.0,6212.0,623.0,0.78603,0.90885,0.84744]
[2446437.0,"MuTectL100H","syn2446436","Broad SMC",7086.0,7005.0,81.0,0.88637,0.98857,0.93747]
[2449297.0,"dmut0.set3.0_5","syn2449296","DMUT",6523.0,6328.0,195.0,0.80071,0.97011,0.88541]
[2449602.0,"LoFreq Somatic: g1a6d65e t-a100","syn2449601","LoFreq Somatic - GIS",7085.0,6887.0,198.0,0.87144,0.97205,0.92175]
[2450371.0,"varScan.snv.v6","syn2450370","WashU",7271.0,7075.0,196.0,0.89523,0.97304,0.93414]
[2450373.0,"viper.v1","syn2450372","WashU",7723.0,7250.0,473.0,0.91737,0.93875,0.92806]
[2453737.0,"nRex","syn2453736","DellyTeam",6175.0,6117.0,58.0,0.77401,0.99061,0.88231]
[2453752.0,"nRex","syn2453751","DellyTeam",6312.0,6204.0,108.0,0.78502,0.98289,0.88395]
[2453761.0,"nRex","syn2453760","DellyTeam",6869.0,6560.0,309.0,0.83006,0.95502,0.89254]
[2453859.0,"Dream_Set3_MuSE_Setting1","syn2453858","Wang-Wheeler-HGSC",6659.0,6633.0,26.0,0.8393,0.9961,0.9177]
[2453861.0,"Dream_Set3_MuSE_Setting2","syn2453860","Wang-Wheeler-HGSC",6148.0,6129.0,19.0,0.77553,0.99691,0.88622]
[2453883.0,"Dream_Set3_MuSE_Setting3","syn2453882","Wang-Wheeler-HGSC",7229.0,7140.0,89.0,0.90345,0.98769,0.94557]
[2453885.0,"Dream_Set3_MuSE_Setting4","syn2453884","Wang-Wheeler-HGSC",7481.0,7291.0,190.0,0.92256,0.9746,0.94858]
[2453907.0,"MuTectL850G","syn2446436","Broad SMC",7086.0,7005.0,81.0,0.88637,0.98857,0.93747]
[2453909.0,"MuTectL850G","syn2453908","Broad SMC",7247.0,7099.0,148.0,0.89827,0.97958,0.93892]
[2455084.0,"LoFreq Somatic: g1a6d65e t-a100 n-a3p","syn2455083","LoFreq Somatic - GIS",7036.0,6874.0,162.0,0.8698,0.97698,0.92339]
[2456202.0,"MuTectL750W","syn2456201","Broad SMC",7297.0,7202.0,95.0,0.9113,0.98698,0.94914]
[2456285.0,"varScan.snv.v6b","syn2456284","WashU",7058.0,6995.0,63.0,0.88511,0.99107,0.93809]
[2456287.0,"MuTectL700W","syn2456286","Broad SMC",7344.0,7226.0,118.0,0.91434,0.98393,0.94913]
[2460162.0,"viper.v2","syn2460161","WashU",7223.0,7149.0,74.0,0.90459,0.98975,0.94717]
[2460591.0,"VarDict_v1","syn2460590","AstraZeneca",9036.0,6607.0,2429.0,0.83601,0.73119,0.7836]
[2460633.0,"Dream_Set3_MuSE_Setting5","syn2460632","Wang-Wheeler-HGSC",7334.0,7207.0,127.0,0.91193,0.98268,0.94731]
[2463211.0,"Dream_Set3_MuSE_Setting6","syn2463207","Wang-Wheeler-HGSC",7415.0,7253.0,162.0,0.91775,0.97815,0.94795]
[2463232.0,"Dream_Set3_MuSE_Setting7","syn2463231","Wang-Wheeler-HGSC",8425.0,7439.0,986.0,0.94129,0.88297,0.91213]
[2463247.0,"Dream_Set3_MuSE_Setting8","syn2463246","Wang-Wheeler-HGSC",7613.0,7335.0,278.0,0.92813,0.96348,0.94581]
[2463397.0,"sga.freebayes.test","syn2463396","sga",6449.0,5721.0,728.0,0.7239,0.88711,0.80551]
[2463748.0,"freebayes.test","syn2463747","sga",6035.0,5350.0,685.0,0.67696,0.8865,0.78173]
[2463868.0,"sga.freebayes.filtered.test","syn2463867","sga",5740.0,5686.0,54.0,0.71947,0.99059,0.85503]
[2464413.0,"nRex","syn2464410","DellyTeam",6389.0,6205.0,184.0,0.78514,0.9712,0.87817]
[2464535.0,"sga.freebayes.filtered.lowq.test","syn2464531","sga",6315.0,6152.0,163.0,0.77844,0.97419,0.87631]
[2465312.0,"varScan.snv.v7","syn2465310","WashU",7315.0,7150.0,165.0,0.90472,0.97744,0.94108]
[2466534.0,"viper.v3","syn2466533","WashU",7429.0,7212.0,217.0,0.91256,0.97079,0.94168]
[2467034.0,"viper.v3b","syn2467033","WashU",7300.0,7156.0,144.0,0.90548,0.98027,0.94288]
[2467165.0,"viper.v3c","syn2467162","WashU",7331.0,7196.0,135.0,0.91054,0.98159,0.94606]
[2467686.0,"nRex","syn2467685","DellyTeam",6741.0,6176.0,565.0,0.78148,0.91618,0.84883]
[2468117.0,"viper.v3d","syn2468116","WashU",7310.0,7203.0,107.0,0.91143,0.98536,0.94839]
[2469655.0,"varScan.snv.v7b","syn2469653","WashU",7363.0,7114.0,249.0,0.90459,0.97094,0.93776]
[2469987.0,"CARNAC","syn2469986","Wang-Wheeler-HGSC",9146.0,5909.0,3237.0,0.74769,0.64607,0.69688]
[2470029.0,"varScan.snv.v7c","syn2470028","WashU",7207.0,7132.0,75.0,0.90244,0.98959,0.94602]
[2470044.0,"viper.v4","syn2470043","WashU",7276.0,7192.0,84.0,0.91003,0.98846,0.94924]
[2470090.0,"MuTectL700A","syn2470089","Broad SMC",7445.0,7198.0,247.0,0.91079,0.96682,0.93881]
[2470438.0,"common4","syn2470437","Team2014",4978.0,4969.0,9.0,0.62875,0.99819,0.81347]
[2470450.0,"STK_test","syn2470449","Team2014",6732.0,6489.0,243.0,0.82108,0.9639,0.89249]
[2472860.0,"MuTect - L630D8P","syn2472859","Broad SMC",7402.0,7255.0,147.0,0.91801,0.98014,0.94907]
[2473029.0,"MuTect - L630D8P2","syn2473028","Broad SMC",7394.0,7253.0,141.0,0.91775,0.98093,0.94934]
[2476341.0,"viper.v4b","syn2476340","WashU",7231.0,7169.0,62.0,0.90712,0.99143,0.94927]
[2476415.0,"viper.v4c","syn2476414","WashU",7257.0,7178.0,79.0,0.90826,0.98911,0.94869]
[2476556.0,"viper.v4d","syn2476550","WashU",7264.0,7191.0,73.0,0.90991,0.98995,0.94993]
[2476776.0,"viper.v5","syn2476775","WashU",7229.0,7153.0,76.0,0.90548,0.9899,0.94769]
[2478107.0,"Dream_Set3_MuSE_Setting9","syn2478106","Wang-Wheeler-HGSC",7531.0,7308.0,223.0,0.92471,0.97039,0.94755]
[2478109.0,"Dream_Set3_MuSE_Setting10","syn2478108","Wang-Wheeler-HGSC",7445.0,7274.0,171.0,0.92041,0.97703,0.94872]