>LOC_OS01G13310.1-1 GTGAGTGAGCCAATTCTGAGCACACACTCTCTACTCTCTCTCGGCAGCGTCACACCCTCACAAATCAACTCCACTGTGCCAAATTTGATACTACCTTCGTTTTTTAATATATTGATGTCGTTGATTTTTTTTATGAACGTTTAATCATTTGTCTCATTCAAAATTTTTGTACAAATATATATAAAAAGAAGTCATGCTTAAAGATCATTTCATGATAGATCAAGTCACCATAAAATAAACGATAATTACGTAATATTTTGTAGTAAAATAAATCATCAAATCTACCTAACTGAAAAAGTAAATCTCTCAAAGCAACTTGGATGAACCATGTAATGAACAAAACAGCAACTTGGATGAGCCATGTAATGAACAAAACGGTGACCATCCGATACAGAAAACGACAAAACAGAAATGACAAATCGTAGCCATCCGTTCAAATGAAGAGCCTTCCTGAAGGTAAAAAGAGAGAGATAGTAGTAGAAGAAAGAGGATTAAAAAAAAAGGAAAAGAAAAAGAAACAACGCTCCGCCTCAGCTATCGCTTAGCAAGCATGATCATGGGATGGGATCGGTTGAGTTCAGTGGGCCGAATGATCGTGGGGTTAAGCAACATGTTCAATTAAATCTAAAAGAGACACAAAAGAAAAAAAACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTAATGTTAATGAATCTATATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGAGAAATGCTAGAATGACCTACATTGTGAAACGGAGGGAGTATTATTAATTTGCAACTCAAAAAAACTAATCAACGATTGGACAAATCAAATTCCAATAAATTAAATTTTGGAAAACCGCCTATTGTTTCCTGTCAATTATATTCTCTTAACACCTATTCAAATATGTAAAATAAAATTACATTTGCTAAAACATATGTATCACAAGTAGGAGGATAGACGGAACATACAAGGAGAATAAGGTGGTCACGCATAAGTAGAGATGGCGAAAATTCGGTGGCTCGCACAGTACAGCAACTAATAATATGCATGGTTGTTTATACTCAAATTTTAACATCAAAGAACTTATAAATTTTGATTCCACCGTGAAAAAATTAAAAGGACCCATGCAGTGACAAGACGATGTTAATAACAGAGTCCATAAAGTAGTATATCTTATTAAAAAGTCAACGGCGTCATAAATTGGAAAGCCGGAAAGAGCATGTGGCATAGTTTGGTACACCTGATACTGTTTTTGACTCTTCTAACTGTTAGATCCTGCACACTATGACCAGTATCTCCTAGGATCATGATATGTTATATTTGCCTATACCATGACCAGTATTTCCTGGGATCATGATATGTTTTCTTTGCCTATTCCATGACCTTGTTACTTGGCAGGGGTTATCGGCTTTGTTGTTGATATATACTCGCTGTCATTTATTTGATGTCCAGATCTGATCCAGCTGCTTGGTTGGCTTTTGGAGGAATGTAGTTGCCAGGTAGTAGTCAATGAGTCAAAAAACTCTGTGTAAGTCTATCTCCATTTCTACTAATGGAAATGGGAGGCCTGGCCTCTTGCTAAAAAAAACTCATCGTTTATAGGCATGCAAATTCTGTATTATCAACAAATTTTCTGAGTTTTAGATGTAGTTACTACTTTCATGGAGCATTGGATAGGTCAGTTTACTATCAAAACAATATAGATCATGATGTTACTTACTCCTTGAATACTTTAATTTCCAG PhaseCut45: +Start +End FragmentLength FragmentNumber 1210 1306 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAG 1208 - 0.39 0.66 0.87 0.41 0.5 0 0 0 0.37 0.16 0 CATTTTCCACATTCATATTAATGT 1232 - 0 0 0 0 0.25 0 0 0 0.37 0 0 TAATGAATCTATATAGATATATAT 1256 - 0 0 0.22 0 0.25 0 0 0 0 0 0 ATGAATCTATATAGATATATATGT 1258 + 0.99 0 0.44 0.2 0.99 0 0 0 0.37 0 1.17 GTCTAGATTCATTAACATCAATAT 1280 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS01G13310 3359 LOC_OS01G13310.1-1 osa-miR1436 1199 1219 LOC_OS01G13310 3359 LOC_OS01G13310.1-1 osa-miR1436 1199 1219 >LOC_OS01G21990.1-3 GTATGTATTTATGGATTAGGCTGAATATTTGTGTTCTACACGATGTTCAGAACCCCTTGATGTATTTACATACTGAAACCTTGCTTTATTCCTGTGTCATGTTCCATAGGAAACAGTGCATGATAGACATCAATTCCAATCATGTACAAACACACCGTTGTGAGTATAAATGTAGCTTATTTCTGAAGGAACCTAAACCCTGCTCTACACCATTTAAGCATAACCTAGTACCATGAATCCAGAGCTAATTGACAAGGAATTTCCTTTTGGTCATGGTTTCTCATTTTGCTTTTTTTATCATTTATAAGATTGTGTTGCAAGTGTGCAAGGTACTCCCTCTGGTCATAAATATTTGATGCTTAGGATAAGATTTGCTTAAACATATAAAACTTTGACCATGAATAAGTTTTTCAAATGCTTAGTTTACAACATAAATAATGGTGTATGTACATTTGCCTCGAAAAGTAGTTACTGTATCATAATATCATAAACTTACTACTCCCTCCGTTTCACAATGTAAGTCATTATAGCATTACCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAAAATGACTTATATTGTGAAACGGAGGAAGTAGAATTTTATAAATTTATTCTGATATAAATTTTGTCGGTAATATGGGCCCGGGGGTATCATGTTTAGATGAAGGAGGCTGCCCCCCAATGCCACGTGGCCCTCCCCCGAGAGGGGTCGAGCCCGAGGTAGGGTGGTGGCCACTCCCTGGCCGAGACTAGAGGGAGAAGGCTGCCCCAGGCGCCACGTGGCCCTCCCCCGAGGGGGGATCGGGCCCGAGGTCGGGCGGCCACCGCCCCCTCCCGTGACTAGGGGTCGGGCTCCCCCGACCCCCTCTTTAGGTCACCACGTACGGTGGGTTAGGTGTCCACCTATAGGTGCCCACCTACCCGCATTTATGGCGACCCAAGCGGTCGCGCCACGCCGCATTTAATGCCGCGTGCAGTATACTCAACCGGTCTGTGACCGGTCGAATGACCGATGGGACTGGGTAGTGCGCCTGTGCGCTGCTCGTGTGTCAGGCGGCGTGCAGCCTGACATGTCCCATCAAATAATGATGGTGAGAGGTTCTCATCCTCTTATCCCAGCCGGAGTCGGTCCTCCCGCTCTGGTCAAAGCTATGCTCCCGTTTCCCGGTGTAATAGGAGCCCAGAAGTCTTCACCCATTAAATGGTGAATGACATGGGCGCCCCCCGTGTCAGGCGGCATGGTGTGGTAGGCCCCAAGTTAAGGAACAAGACATGCATTTAATGTAAAATATTGTAATACTTCTCGACAAAGTTAGGTTGTTGGGTCTATGTGGTAACCCCTTGAGGTATAAAAGGAGGTCCAGGCCTAGTAAGAGAGAAGGAACTTCCGAGCGAACTGGCGCTTGGGTCTCGCAACCCCAAGCACTTGTGTTCTACACTCAATCAATCAAGCACAGGAGTAGGGTATTACGCTTCTCAGCGGCCCGAACCTGTATAAACCCCTTTTGTCTCATCGTCTTTGGGGGATTGAACCCTCTCAAGATCACACAGCTTCGCTCACCAAGCACTCGGATCTCACCCGCTGTCCCCGGCCGAACTCACAAAGAGGGGGCCTCACGGTTCCCTGATGGAGGAGTTCATTTGCCAACAAATTTGGCGATTGGGATTTTGAAAGTTCGATTGAATCTTGTCCTAAACATCAATTATTTATGACCGGATGGAGTAATAGACACTGGCAGAGCTCCTTGAGTCCAGAGTGGGTTTTGGTCCCCTGTTTTTTTATGGATATTGCTTAAGAAAACTATTGATTATGAAAATATGGCAACCAAATACTAAAGCGGAATGCTCATGATAAGGTTGTAAATATGCTTGTTTGCTTGGTCTGTCCTTTAGTTTGCTCCACCCTCCGCCAATGTGTATACAGTTTGCTAATACTATGATTTTTGTTATATCTGTCTTCCATCTGGTGATGGGAATATACTGGATTTACTGAGGTTACTGGCATGTATATTACTTACCTCTTACCCTGTAAGTTTGTAACGGACAGAATACGAAAATAAGCAAAATCTACCATTAATGACATCCTATTTTTTTTCTTTGTTTTGCAG PhaseCut42: +Start +End FragmentLength FragmentNumber 3677 3773 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTCATATTGATGTTAATGAATCT 3677 + 5.53 3.1 8.96 3.05 9.43 0 0 0 13.95 0.66 14.26 CTAGACATATATATCTATCTAGAT 3699 - 0 0 0.22 0 0 0 0 0 0 0 0 AGACATATATATCTATCTAGATTC 3701 + 0.2 0 0 0 0.25 0 0 0 0.37 0 0.23 TCATTAACATTAATATGAATGTGG 3723 - 0.39 0 0 0 1.49 0 0 0 0 0 0 ATTAACATTAATATGAATGTGGGA 3725 + 9.28 2.21 5.9 1.02 2.23 0 0 0 2.57 0.33 2.57 AATGCTAAAATGACTTATATTGTG 3749 + 0 0 0 0 0 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS01G21990 6774 LOC_OS01G21990.1-3 osa-miR446 3666 3689 LOC_OS01G21990 6774 LOC_OS01G21990.1-3 osa-miR446 3666 3689 >LOC_OS01G24780.1-3 GTACTAAATACTCTTTTCTTGCCACCTAATACATCAGTTCTTATTTCTTCATTCGTAAACTACAACTAATATATACTTCCTCCGTTTCACAATATAAGTCATTTTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTTGATGTGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATAAATGTGGAAAATGGTAGAATGACTTATATTATGAAACGGAGCGAGTAATTTTGTTTCCTTGATCTTATGGTTGTTCACACGCAG PhaseCut80: +Start +End FragmentLength FragmentNumber 1657 1729 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTTATATTGATGTTAATGAATCT 1657 + 9.68 5.98 14.86 2.44 12.41 0 0 0 15.79 0.33 12.63 CTAGATAGATATATATGTCTAGAT 1679 - 0.59 0 0.22 0 0.5 0 0 0 0 0 0 GATGTGTTAATGAATCTAGATAGA 1705 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441c 1649 1672 LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441b 1649 1672 LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441a 1649 1672 LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441c 1649 1672 LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441b 1649 1672 LOC_OS01G24780 3374 LOC_OS01G24780.1-3 osa-miR441a 1649 1672 >LOC_OS02G12580.1-5 GTAGGCGTTCATAATTCAACATTACCTTTTATTATAAATTCTTCTCATTTATTGAACAACTGTAGAACATTCCCTAAAAATACCTTCTGAAAAATCTTAAAATACCCATCCTGGGGAAATGCTGGAATACCTATGATGAGATCGCAAGTACATTTCTTAACTACTCTGTATATTAATGTATGACGCCGTTGACTTTTTAACCAACGTTTGACCACTCGTCTTATTCAAAATTTTTATGCAAATATAAAAATACTTATGTCATGCTTAAAGAACATTTGATGATAAATCAAGTCACAACAAAATAAATTATAATTACATAAATTTTTTAATAGACGAAAGATCAAATGTTTGTCAAAAAGTCAACGGCGTTATACATTAAAATACGGAGGTAGTATATATTTGTTAGGTGCATGGAATCTTGGAGAATATCTAAGTTATTAATTTAACAATTTTAAGAGCTCAATACAATTTTGTGCGCTTCAATGTGTTTGATTGTAAACCGATGAATCCACTAACTGGCTCTTGTGAATTTTTGGAGGAGCTAATCCACAAACTGCTAACTGCTAAGGCATATATCAAATAATTGTGAATTAGAATCTGAACGCAGATGTTGAATGAACATCTGCCGATGTTGCTCTTCGTGTGACTGTGTGGTGTCAGTCAGTTAAATTGGTGCCACTGAAGAGGTTTATAGCAAAAATAGTGTTATATGCATGAGCCAAGAAGACGTTTCAGCTGTATTCATGACAGTACTTTTTTGTATGTTCCCGCATCTTGCAAGGGACCAATGATATACTATAATTTGCCTGCCTTGGATGCAATATTCAGATATTCTATCTTGTGATTTTGTCATCCAG PhaseCut51: +Start +End FragmentLength FragmentNumber 3481 3601 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAACCAACGTTT 3479 - 0.59 0 0.22 0.2 0 0 0 0 0 0 0 GACCACTCGTCTTATTCAAAATTT 3503 - 0.2 0 0.22 0 0.5 0 0 0 4.77 0.33 4.68 TTATGCAAATATAAAAATACTTAT 3527 - 0 0 0 0 0 0 0 0 0 0 0 CATGCTTAAAGAACATTTGATGAT 3553 + 1.58 0.22 3.28 0 2.48 0 0 0 0 1.15 0 ATAAATCAAGTCACAACAAAATAA 3575 - 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123c 3471 3492 LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123b 3471 3492 LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123a 3471 3492 PhaseCut52: +Start +End FragmentLength FragmentNumber 3481 3601 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTGACTTTTTAACCAACGTTTGA 3481 + 0.39 0 0.87 0.2 2.48 0 0 0 0 2.14 0 GACCACTCGTCTTATTCAAAATTT 3503 - 0.2 0 0.22 0 0.5 0 0 0 4.77 0.33 4.68 TTATGCAAATATAAAAATACTTAT 3527 - 0 0 0 0 0 0 0 0 0 0 0 CATGCTTAAAGAACATTTGATGAT 3553 + 1.58 0.22 3.28 0 2.48 0 0 0 0 1.15 0 ATAAATCAAGTCACAACAAAATAA 3575 - 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123c 3471 3492 LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123b 3471 3492 LOC_OS02G12580 4850 LOC_OS02G12580.1-5 osa-miR2123a 3471 3492 >LOC_OS02G13910.1-3 GTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCAAGGCTCCAAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGCAAACCATTTAATAAGCTGCTTCTCTCATTGATTATTACCCAAATTGTTCTGTATTTCTGTCTGGCTAGTCTCTCCTGTCTAAAATAATTGTTTTGAAAGTAACATTTTCACTTATTGGTTGTACTACCTCCATTTCACAATGTCATTTTAGCATTTTTCATATTCATATTGATGTTAATGAATCTAGATATATATGTGTGCCTGGATTCATTAACATCTATATGAATGTGGGTAATGCTAGAATGACTTACATTGTGAAAAGGAGGAAGTAATAATTTTCTCAGATGAAGTTTGGTGTTAAACAGAGCTTCTATACATCACTCCCATGTGACGACTGCACGAATCCTGAAGCACATCAAACGGGTATCCATCAGAACTCACATACTCAATGCCTTCTTACTTTCCCCACGATTGCTATGAGCAGGTAAACCAGTGAATTGAGAATTTTTGGCCTGAGTTGAGAAGATTAACTATATTTCAATCTTGTTTTGCCTGAATTCAAAAGATTCCCTTTATCTTAATCTTTTTAATTTTGCCTTGTGAAATCCATGTGTTCTAGATATGCCAAAACAAAGAAATTTTATGGCATTGATGTACCTGTTTGAATTAAATGACCATCTTGACTAGCTGATGACCACTGCAAATGCCTTCCATTCTCCGCCATCCTAAAGTGTTGATGCACGACCCACGATGGGTGTGGGATGAAACTAGTCTATAACAATTATTTAAGGGCGCAAATAAATAAATAAATAAATAAAATATTGGAAAGCTGAAAATTTTATATAAAAATGTTCTTTCGGAGGGCTGATGGAGAAATTTTTTAGAGAAATTATTGTTTAGGAGCTTAAAAAGTAAAATATGCCTATGATTTTTAAGTAAAATAATATGCCTGTGATATAATTCATAATCCGTAAGCCGAAAAATAGTACTGGGGCAAAAAAAGTTATATCTTCTGCAAGCAAAATTATTAAACTAACGTGAGATAATTTTCTGCCGATGTCGAGGAACCAATAGCAAAATAGCCACAAGATTAGAATGACATGATAAATGACCGATGGTTATCCTGACAGGGGAATTATCTTCTAGTAGTATTGGTTTAGCAAAAAGGTAGTAATTCATTTAGCAAATTTTGCTAGACAACATCATGAATTCACGGTTTTACCTGTAGGATATCAGACAAAGTTAATTTTGAGGGAAGACACCATATAGACATAAAAATTAGCTCGTGGACACTACACCATTAGAATATTAATTTTTGGTTGAGTAGGAGAAAAAACCGTGTGAAAGTTCTGAATTACCCATGGGCCCACATGCTAGGCTTGCCATCTCTCTATCCTTCTCTCTCTCGTACATGGAATCCGCATATAAGCCTCTACTATCTTTTTCCCCATCTACTTCCTCTATTCCTCTCACTCTCGCAG PhaseCut13: +Start +End FragmentLength FragmentNumber 2255 2327 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAT 2255 + 6.71 2.66 8.74 2.44 10.18 0 0 0 16.52 4.11 3.04 ATATATATGTGTGCCTGGATTCAT 2277 - 0 0 0 0 0 0 0 0 0 0 0 ACATCTATATGAATGTGGGTAATG 2303 + 0 0 0 0 0 0 0 0 0.37 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G13910 10059 LOC_OS02G13910.1-3 osa-miR446 2240 2263 LOC_OS02G13910 10059 LOC_OS02G13910.1-3 osa-miR446 2240 2263 >LOC_OS02G27360.1-4 GTACGCCATTATACTCTGCCAATTATAGTTATGTGCTTGTTTTTTTTTTCTCTTTTTTTTCTCTGCTTCTGTATGTCCCTTGTTTACTTTGTTTGGATCGTTCTTCGTTGCTTGCTAAATAGAGCCTCTTTTTTTTTTTTACCAATGCGTTTAATTTGATTCGTTATATAGTCTTGCATATGAGTATATGACTGTCTCCCTGCTATGGGTCTATGAGGCTTAACTGGCATAAGAAGTCCGTAGTTTCTGGCTGATGCTTCACTTTACACCAGGAAGGTGATTTCATCAACTTTTGTGAATGATATGGGCCAAGAGTGTGATCGGTAGTTGCTTTCCTACTTACGATATTCTGTTCAAGATTTGGATTTTGCCAAATGAATTAGGATATAGTAATTTAACTAGTTGAGTAAAAAAAAGAAGAAAAAACTCAGCATCCAGAGCTTTTGACTAGTGTTTCCTATTCCCCTAGAGGCCTAGACAATTTGATAGTTCATCCTTAGATGGCAAACAAACATTTATTGAGTTGTTTGAATTTCAAACTTAGTTATGACTTTTAGCTTATATTGTTTCATTCAATTTGAATTTTGAATCATAGTATAGTATTTTTCTACCAAAATAAAAGATAATGATTTTGTATCAAATCATTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTATATTCATTAATATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAATGGAGGGAGTACATGTATTGAATTTTTGAAATGTTGTATACTGTTTTATAAATTGTGTCTGCTTTATGAAAGTATTCAACAACTGCAAGTGTGCAAAGTTCTCTTCTCTCTAGCATGATTGTCAAAATTTCGGTTTGCTTCTCCATGTCCCACATTCATGTTTGTGTACTGCTGTTCTCATGTGATTAATAATCGTATCATTCTCTGTTAATATGGCTTAACTTGCTTTTTTTAATTTTCCGAGATGTACAGTACATTAATAACCAGGCTTTACTAACTAAAATAATGTGCTTCTGTAGCTGTTTAGTTCTTTTAGTTGTTTTACTGGTCTCTTTTGCTGATGTTTTAGTGGGATATCTGGCTGCAACTTTAACTGAAATATCACATTTCTTTGTAAAAAGGACTAACCCAGCAGTGCTAAATATTGATCACATTTATACCTATGGATTCCACACACAGCTAATCAACTTCAAAGTGCTAAAAGGTAAAAACTCCTCGAATTAGGGTAGGGATATTAATAGATGGTTTTCTTAGCACTCCTTCATTATCTAAAATTTTGTACATATCAAAATATTGGTTTGGGGACAAGTTTGTATCTGCCAATGATTAAGCATAGTGATTCAAATCTTGCCTGATCCAATCAAGCTTGTCTGCCTATTAATCTCTGGATTACACATCTTCATGGCAGCCAAATGAGAAGCTTGGTCCTTCTCATGCATAGTGGCAATATGTTGTGTCTTTACTGATCAGTCACCAGCTACCAGTTCCACTAACCACTGCCTATGCCCGCAATGATTCCCTACTCTCTTTCATCTTGCATGGATAATTGTGTTGTAACACTCTCAACTATTCCACGATCTTGCCACTTTCCGCACTCTCAACTATTTCCTAATCTTTCACCTCCATCATGGATTTTGCTGAAATGGTGAAAGCGCTCCATACACGAGAGGGTGGTTCAGCTACCTGCTGCTGTAGATAGAATTGTGAGATCCAGCCATCCAGGATGCCTGCACCAATACATATGGCCCATATGCATATTCATTTGATAAGAGGATGACCACAGCACTTCAGTAGTTCGTTCTTTCGGCTCAATCCTGCTATATATGACTGAGCAATGTCTAAACAATATATTATACCCTTTAAAATGAAAGTTTTAACTTTTAACCTCCAATATCATTGTGCTTGCATATAACTGAGTTTTTTATGATTAAAATACTGAAATAGAACTTATTGAGTGAATGGTTATTTTCTAGTGCTAGACTGTGCAAAAGAATAAAAGACCGTGGAATGATTTAGCCATTGACATGTCATTACAAATCACTTGTAATAAGGCATAGTTTAACAATAGTGTAGGAGAAACCACAGTTCATTAGCCGCTGTATAGTAAGAGGCTAGATGCTATATTTTCATGCAACAGATTAACTGATATGCCCATGAGAGGTGTACATTTCTTATTCCTGACATTCACTTCTAACTTTTTTTTGAGGATTCGTGACATTTACATTAGTTTGTATTGCTGAGATCTTATAAACATGTTACTGTCTAG PhaseCut60: +Start +End FragmentLength FragmentNumber 2038 2110 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2036 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2060 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2062 + 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGATAGATATATAT 2086 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 PhaseCut68: +Start +End FragmentLength FragmentNumber 2039 2111 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATTCTA 2037 - 0.79 0 0.66 0 1.24 0 0 0 0 1.81 0 ATTTCCCACATTCATATTGATGTT 2063 + 0 0 0.22 0 0.25 0 0 0 3.3 0.33 1.17 TTAATGAATCTAGATAGATATATA 2085 - 0 0 0 0 0.25 0 0 0 0 0 0 AATGAATCTAGATAGATATATATG 2087 + 2.17 0 0.66 0 2.73 0 0 0 5.14 0.16 3.51 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 PhaseCut72: +Start +End FragmentLength FragmentNumber 2039 2111 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCTAGC 2039 + 0.39 0 0 0 0 0 0 0 0 0.16 0 ATTTCCCACATTCATATTGATGTT 2063 + 0 0 0.22 0 0.25 0 0 0 3.3 0.33 1.17 TTAATGAATCTAGATAGATATATA 2085 - 0 0 0 0 0.25 0 0 0 0 0 0 AATGAATCTAGATAGATATATATG 2087 + 2.17 0 0.66 0 2.73 0 0 0 5.14 0.16 3.51 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.1-4 osa-miR1436 2029 2049 >LOC_OS02G27360.2-4 GTACGCCATTATACTCTGCCAATTATAGTTATGTGCTTGTTTTTTTTTTCTCTTTTTTTTCTCTGCTTCTGTATGTCCCTTGTTTACTTTGTTTGGATCGTTCTTCGTTGCTTGCTAAATAGAGCCTCTTTTTTTTTTTTACCAATGCGTTTAATTTGATTCGTTATATAGTCTTGCATATGAGTATATGACTGTCTCCCTGCTATGGGTCTATGAGGCTTAACTGGCATAAGAAGTCCGTAGTTTCTGGCTGATGCTTCACTTTACACCAGGAAGGTGATTTCATCAACTTTTGTGAATGATATGGGCCAAGAGTGTGATCGGTAGTTGCTTTCCTACTTACGATATTCTGTTCAAGATTTGGATTTTGCCAAATGAATTAGGATATAGTAATTTAACTAGTTGAGTAAAAAAAAGAAGAAAAAACTCAGCATCCAGAGCTTTTGACTAGTGTTTCCTATTCCCCTAGAGGCCTAGACAATTTGATAGTTCATCCTTAGATGGCAAACAAACATTTATTGAGTTGTTTGAATTTCAAACTTAGTTATGACTTTTAGCTTATATTGTTTCATTCAATTTGAATTTTGAATCATAGTATAGTATTTTTCTACCAAAATAAAAGATAATGATTTTGTATCAAATCATTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTATATTCATTAATATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAATGGAGGGAGTACATGTATTGAATTTTTGAAATGTTGTATACTGTTTTATAAATTGTGTCTGCTTTATGAAAGTATTCAACAACTGCAAGTGTGCAAAGTTCTCTTCTCTCTAGCATGATTGTCAAAATTTCGGTTTGCTTCTCCATGTCCCACATTCATGTTTGTGTACTGCTGTTCTCATGTGATTAATAATCGTATCATTCTCTGTTAATATGGCTTAACTTGCTTTTTTTAATTTTCCGAGATGTACAGTACATTAATAACCAGGCTTTACTAACTAAAATAATGTGCTTCTGTAGCTGTTTAGTTCTTTTAGTTGTTTTACTGGTCTCTTTTGCTGATGTTTTAGTGGGATATCTGGCTGCAACTTTAACTGAAATATCACATTTCTTTGTAAAAAGGACTAACCCAGCAGTGCTAAATATTGATCACATTTATACCTATGGATTCCACACACAGCTAATCAACTTCAAAGTGCTAAAAGGTAAAAACTCCTCGAATTAGGGTAGGGATATTAATAGATGGTTTTCTTAGCACTCCTTCATTATCTAAAATTTTGTACATATCAAAATATTGGTTTGGGGACAAGTTTGTATCTGCCAATGATTAAGCATAGTGATTCAAATCTTGCCTGATCCAATCAAGCTTGTCTGCCTATTAATCTCTGGATTACACATCTTCATGGCAGCCAAATGAGAAGCTTGGTCCTTCTCATGCATAGTGGCAATATGTTGTGTCTTTACTGATCAGTCACCAGCTACCAGTTCCACTAACCACTGCCTATGCCCGCAATGATTCCCTACTCTCTTTCATCTTGCATGGATAATTGTGTTGTAACACTCTCAACTATTCCACGATCTTGCCACTTTCCGCACTCTCAACTATTTCCTAATCTTTCACCTCCATCATGGATTTTGCTGAAATGGTGAAAGCGCTCCATACACGAGAGGGTGGTTCAGCTACCTGCTGCTGTAGATAGAATTGTGAGATCCAGCCATCCAGGATGCCTGCACCAATACATATGGCCCATATGCATATTCATTTGATAAGAGGATGACCACAGCACTTCAGTAGTTCGTTCTTTCGGCTCAATCCTGCTATATATGACTGAGCAATGTCTAAACAATATATTATACCCTTTAAAATGAAAGTTTTAACTTTTAACCTCCAATATCATTGTGCTTGCATATAACTGAGTTTTTTATGATTAAAATACTGAAATAGAACTTATTGAGTGAATGGTTATTTTCTAGTGCTAGACTGTGCAAAAGAATAAAAGACCGTGGAATGATTTAGCCATTGACATGTCATTACAAATCACTTGTAATAAGGCATAGTTTAACAATAGTGTAGGAGAAACCACAGTTCATTAGCCGCTGTATAGTAAGAGGCTAGATGCTATATTTTCATGCAACAGATTAACTGATATGCCCATGAGAGGTGTACATTTCTTATTCCTGACATTCACTTCTAACTTTTTTTTGAGGATTCGTGACATTTACATTAGTTTGTATTGCTGAGATCTTATAAACATGTTACTGTCTAG PhaseCut60: +Start +End FragmentLength FragmentNumber 2038 2110 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2036 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2060 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2062 + 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGATAGATATATAT 2086 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 PhaseCut68: +Start +End FragmentLength FragmentNumber 2039 2111 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATTCTA 2037 - 0.79 0 0.66 0 1.24 0 0 0 0 1.81 0 ATTTCCCACATTCATATTGATGTT 2063 + 0 0 0.22 0 0.25 0 0 0 3.3 0.33 1.17 TTAATGAATCTAGATAGATATATA 2085 - 0 0 0 0 0.25 0 0 0 0 0 0 AATGAATCTAGATAGATATATATG 2087 + 2.17 0 0.66 0 2.73 0 0 0 5.14 0.16 3.51 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 PhaseCut72: +Start +End FragmentLength FragmentNumber 2039 2111 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCTAGC 2039 + 0.39 0 0 0 0 0 0 0 0 0.16 0 ATTTCCCACATTCATATTGATGTT 2063 + 0 0 0.22 0 0.25 0 0 0 3.3 0.33 1.17 TTAATGAATCTAGATAGATATATA 2085 - 0 0 0 0 0.25 0 0 0 0 0 0 AATGAATCTAGATAGATATATATG 2087 + 2.17 0 0.66 0 2.73 0 0 0 5.14 0.16 3.51 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 LOC_OS02G27360 5544 LOC_OS02G27360.2-4 osa-miR1436 2029 2049 >LOC_OS02G28720.1-1 GTATAACCTCCGTTTTTTCCCTGTGGGGGACTTGGGGCGGGGGGCGGTTAGCCGGTAGGCGGGTTGGGTTGATTGATTCACACGCTGTCATCAGTTTGCTGGTCAAAATCGGGTCCGCTTCTTCGGTTTCCGGGGAGTTTTCCAATCGCTGTTCTAGAAATCCCCCATCTCGTCGGGTTTCGTCGAGGAAATCAAAGCAAAGCGCGTTTAGTGGCAACATTGATTTGAGTCAAAATTTTTTTTACCTCAAGTTCATTTACTACTACTACTACTTCCATTTGTTAAGAAATTGTAGTACTACCAACAACTGTGCCCAGTAACTTCTGTTGCTTCTTTCTAGTACCCTGTTCTACTTTGTCCCTATCCTCTTGAATTCTCGGTGCTTCTAGGATGTCTGATGAATCGTCAAGCTCGAGTACCGTAATAAATTGAATTGCGTGGCAGAGTACGAGCTCCCGATGACACCACCACCTGTCCCTTTCTCTCGGCTCTGATTGCTTTTTTTTTTATTTCTATAGTTTAATGTCTATACAGGCTTTCCGCTAGTGATCCTCCTCCTCCCCCCAACTCTTTTCTTCAGTGATATGATTGCTGTCGTGTGAAATTCTACGAAGATTTCGCAAAGAAACCTCCTGTTAATCCCCTGTCTCTTTTTTACGGGCCAATTGATTTTGGTACAGTACAACTGATCCTGTCTGTTTCTTTTGTCCTTTTAGATTGCCCTGTTTGATTTTGTACCTGTGTTCTCTGTATCTCTGCGCGCGGAATTGATGAACATTTGTGGGCAATAATTTCGCATGGCACACTGCTTCATATCCTGTTTTTTATTTTTTTTTCCTTGGAAGCAACTCTGCTCCGTATCGTGGAAATAGGATTAATGAAATCCGGTTTTTATTGCTAATATTTGGAATATTTAATATGTGTATCGCAAAAAATAACTTCTGCTGCATATTGACCTGACACGCCACATTCTAGCATCACGTGATGAGTTATTGCTGTTTCCATATTTGCTTGCTGTTTCTTTGCCTTTCTCCCCATCCCCAAATCATAAAAGGATTCAAGTTATATTCGGTCTGACGTAAACGTAAGCTCTGCGTGAATTGAATGCTTGTTTTGGCTATCTTTGATGTTGATGCCGTGGTACTAGCTCATCGTTTGCTCTAGTTCTCATGTCTAGCATTAATACGGGAGTTTTGATTTGTTCTTTGGCTGTTTTAATTACTACACTAATTTGGAAGTAAAGTGTTTGCAAATTCCAGATGTTAAATTCTGTAAGGAGTGAACTTACCCGTTCGTTATCTAGACTTGTAAGGTGTATGCTTATTTTGATATTTTGGAGGTGCAATTTTAAGATTTTTTTTTCAGTTTTATTTTTTTAAAAGAATTCATAAAACTACTAGAAGTGAGTTGTACTGTTGGTCTCTGCTGCAGTGGCCGTTCAAATACTCAGTGTTAACTGCATGTTCGGGTGATGGGTTTTTTAGCACTGAAATTGGATGTCCCTTTCAGAGATGTGCTGTACTCCATACTCTATGCTAGCACTGCAGTACTGTCCTAGTCCAACCTTGTCGGCGTGTCTTGCTCAGTTTTATCTAATAATTCAGAAAATGTGTCAATTCAGACTCTTGAATAAGATTATTGTTGTATAGGCGGTCCCAGATTTGGCACTGTGCATTAATTATTAGTATGCTTTGGCATAATTCCTTTATATTAGCTGCTACTGCATGCGGTCCCTGATTTTGACATTGTGTACTGGGGTTCGTGATAGCTTTTTGTTTGGCATGATTCAGAACAGAGAAGTGGCTTGGGGTTAATGATAAATAACATCAAGAACGAGTTAGTTATTTCTGCATCAGGAATTCAGGATCACTATGACTAACATCAGGAATGAGTTAGTACTATATTTTTTCACCAGGATCACTGTGGCTTACTAAGAAATTGATCACATTGTATTGTATAATTACTGAAAAACTACACAGCTTATAAATATATCTGGCAAGTAGTCATTGTTTTCTGAGCTTCAGTAACTAATATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGTTAATGAATCTAGACATATAAATCTATTTAGATTCATTAACATCAATATGAATATAGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAAGTTACATTTGAAGGGCCATTTTTTTTTGGTCTTGTGCAAGAACATAATGTTTTCCTTTCTTTCTTTTTGGTGTGCTAGCTTGAGATAACTATTCTATTCTCCTTGTAG PhaseCut64: +Start +End FragmentLength FragmentNumber 2547 2610 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 2545 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTCTCACATTCA 2566 - 134.1 105.6 4.59 121.53 49.39 10.29 0 11.05 0 0.33 0.94 TTGATGTTAATGAATCTAGAC 2589 + 1.97 0 0 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 PhaseCut65: +Start +End FragmentLength FragmentNumber 2548 2611 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCAT 2546 - 2.76 1.55 2.84 10.79 0 0 0 0 0 0.16 0 TCTAGCATTTCTCACATTCAT 2567 - 8.29 4.43 0.66 9.36 1.49 0 0 0 0 0 0.23 ATTGATGTTAATGAATCTAGA 2588 - 0 0 0.22 1.22 0.74 0 0 0 0 0 0 TGATGTTAATGAATCTAGACA 2590 + 0 0 0 0.2 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 PhaseCut71: +Start +End FragmentLength FragmentNumber 2549 2591 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATT 2547 - 3.36 1.77 0 3.26 1.24 0 0 0 0.37 0 0.23 CTAGCATTTCTCACATTCATA 2568 - 2.37 1.55 0 2.44 1.74 3.69 0 0 0 0 0.23 AGCATTTCTCACATTCATATT 2570 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR446 2571 2594 LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 LOC_OS02G28720 4178 LOC_OS02G28720.1-1 osa-miR1436 2539 2559 >LOC_OS02G30080.1-2 GTGAGTACAAAAATGCTTTGGTCATGCTTGCGCGTGTTGGTGCGGAGTACTACGAGTGAAATGTCGCTTCCGGGGATGGGGCTCACAAGTTTTTTTCAGCATGACGTGACGCCGCTGATGCCTTGTTGATGGTAGGGCTGTCCACGTGGCGCCCTCGATCCAGCTCGTCAGCAAGTTCACCACCCCACACACCGCAAACCCCCCCCCCCCCCCCAACCCCGAATTTTTTTTGAAAATAATACGATTCTAATGGAAAATCGCACAAATATAGATCGGTCGGACGAAATTACAAGTTTAATACACTGTCGAACAACCGTGGTTTGACAGGGAACCTGTCGAACTTACCTCATGAACTGTTGCAGTTTGACGGGTTAGTGGTCAAAAAAAAAAAGTACGTGCTACAGTACTCGGTAGGGACCTATCGAACAAGGGAACAGGTAGTGTTCGATAGGTGTGATGCTACAGTGTTTTTCCTTTCATAAAAATTATTTTATCACCTGTCGAACTGTGGTTATTCGATAGGTGCCATGTCGAACCACGGTTGTTCGATAGGATGCTAAACTTGCGATTTTGTCTGACTGATATATATTTGTGCGATTTTCCATTAAAATCGTATTATTTTCAAAAAAATTCCCCCCAACCCCACCCCCATAAAAAATGATATTATTTTAACCGATTTTTTTAATTTGGCGGTATTTGTTCACATTTCACCAAATTTTGTTAAAAAAATAATTTTGGAATATTGTCACCTTCGATACAAATGGAGAAAAAAACGAAATATTAAACCCTAGTTCTAGGTCCGGCCTATTTCCGCATTGGAGCTATTAAAACTCAATTCATCCCTTAAAAAAGATATCTCCTCATAAAAAAAATTAATAAGATAGATCAAAATGTGATATGTCATTTTATAAACATGCAAATTCAAATTTAACTTATACAAATAGAAACAAAAATAACAAATTTAACTATTAATAGAACATGTAATTCACGGTCAAATTTGTCATTTTTGTTTTGAATTGTATAAGCCTAATTTTAACTCGCATGTTTGCGAAAAGATATATCACATATTGATCCATCTTGATAATTTTTTAAAATTTTTTATAACTTTTTAAACGCCATGCACAAAACAAGGGGATGTTGTCTCAAGGGAAAAAAAATCCACTTCCCTATTAAGCAGGCTCAATTTGAGCTCATGCAGTCGAGCTGGGCAGTAAGTAGTATATAGTATATAAGTGTATAACATATATTTTAAGAATGCTTTTCATAAAATTAATTATTTTTCTAATCATATCAATAAAAAAATGGTACAAACACAAACTGAATCATTATGTACATATATACTTCCTCCGTTTCTAAATATTTGACACCGTTGACTTTTTAGCACATGTTTAACTGTTCGTCTTATTAAAAAAAATTTTGTGAAATATGTAAAACTATATGTATACATAAATTATATTTAACAATGAATCAAATGATAGGAAAAAAATTAATAATTAATTATTTTTTGAATAAGACGTATGGTCAAACATATTTAAAAAAGTCAATGGTGTTAAATATTTAGAAACGGAGGGAGTACTAATACATATTTTACCTATTAGTTTAATTAACAAATAAACAAGCTAAATAAATAGCGTAAGTCATATAAAGTTAAGCTTGTTTGAAGTTTTAGCTGAGCCCGAACTGGGCCTGAATGAGCTGAGCTCAAGTGGCTCACGAGCCTAGAGTTTCTCTTTTGACAGCCTTAATTTTTAGCATCGCTAACACATAAATAGAGGGATTGTTTTTTTATTTTCTGTGGATAATTGAGCAGTGAGTTTTTTACCTTTAGCAATCTACTGTAAAACTTTCAACAATACCACTCAAACTTTCAGCTCGAACTTTCTAAACTTTTCTAGTAAAAATTTTGAATTTCCATGGGAACCCTAATTTCCAACTCATGAATTCAAACTTTTATATCGTTTTTAATGGTAGAAGTCTATTTCACACCCTAAGCTTTAGAGAAAGTCTAAAACCACCACACACTTCAAACCAGGGTTGGATCCAGTGTGGATGTAGGGGGACTCGAGTTCCTCCTACCCCGGGGAGAGAAATGAGAGTAGGGGGTTGGAGGAGCTAGGAAGAAGGCAATGAGCCCTTCCTCTGGCCCAAAGCTAGATCCACCCAAAACAGAACACTACACATCCCATCAACTATTCAAATAGTTTATTTTAGATCTCTCAACATAACCTCGGACAGTTTTAGTCACCTCTCGCTTACGTGGTCTCCTAGTCATTAAGATAAAAGATATCCCATAAGATCCACATGTCATCCTTTATCAAGTTCTTTCTCCTTCCCTCTCCCACGACCCTCTTCCTCTCTCCCATCCCATTATCCTCTGTAGCCGAGTGAAGGAGCAGGCGAGGCTATCAGTGAAAGAGGCATGAGGCCGGCTCAGTGTGAGAGAGGGTGGCAGGAGGAGGTTGACTGCGCATGTGGCTAACGCCGAGATCACCCGCACCAGTCGCCGCTCGTTGTGTTCGTCTACCAATCAGACTTGCAAATGGACTTGTGATAGGGTTCTTCTCTTCACGAGCTTGTACTGATGCATCACACAAACAATTATTGTTATTTAGGAAAACTCTCAGAAATTTTAAAGAAAACATTTTGAATTTTGAACACATCTTTTTTCCTGACTTTGAATAGGTCTTTTTTGCTATATTTGACAATACTTTCTTTGGCCCGAAGAACATCATATTGGGACCCACAACCCACGTGTAGACACAAACTAAAATTCACAAATTTTGAACCAAAATTGTGAACCCTACTTTTTTTTTGCGGGGAAATTGTGAACCCTACTTAGGAATGAGATTTATGTGAACCCACAATCCATGTTTTGTTTACATATAATTATACTTTCCCCTTTTTTTATTTTCTCAAG PhaseCut57: +Start +End FragmentLength FragmentNumber 2407 2479 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACCGTTGACTTTTTAGCACATGTT 2405 - 62.41 43.83 68.18 21.78 24.57 0 0 0 116.01 12.67 6.55 ACTGTTCGTCTTATTAAAAAAAAT 2431 + 0.2 0 0 0 0 0 0 0 0 0 0.23 TTTGTGAAATATGTAAAACTATAT 2455 + 0.2 0 0.22 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123c 2398 2419 LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123b 2398 2419 LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123a 2398 2419 LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123c 2398 2419 LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123b 2398 2419 LOC_OS02G30080 4660 LOC_OS02G30080.1-2 osa-miR2123a 2398 2419 >LOC_OS02G30290.1-3 GTGAGTACCATAATTAACTTTTAAGTACTAGAAAATTTCATATCTCCTCAAAACTAACAACTGAGAGTCATCAAACTTTACAATAAAAATTGTTAATGTAGTACTATAAAATCACACCTAGAAAAATATACATGCATATCCATAAGATGCCGGTGGCAGATCCAGAAAGAATAGTAGTAAGATCTGAGCAAACTAGATAGAGTTATAGATAGAGTTACAATCCCCCTTCTATCTAAATATGGTAAAACATTTTAATGGGGTCTTCGTGGGGACTCTCATAGTCTTCACGCCAGTAGTGGGGGCTCGAGACCTTGCCGCTCTCTTGCTGGATCCGCCCTTGGATGTGGGTTTAGTTGACCTCCAAAAATTTTTCACGAACACCCTTGTAAGTACATTTTACTCCCTCCATCCACAAAAGGTTATACATATATTCACATTTGAGTTTTTCTAAATAAGTTGTTTCTATTTGTAGTCTTTATACATTCAAGACTTGGTTGCATGCTTAGGAGTCATGGTTGCATTCAAGACTTAGTTACCAATAAATTAAATGTTTTATTAGAACCTAAGGAGTCATCTAAATACTCATTGGTTGCATGCTTGCATCCACTCCTTGATTTTGTAACATCTAAGGTGATTTAATTTCTTATTGGTCTTGGTGTTAAAAGTAATATGTGTAACTTTTCTAGATGGAGGGAGTATATGTAAGTCCAATTTACATAAATGGCCTCACTAAAATATAAATTGCTACTAATCGACTCTGGGTTAAAAAGTTACTTCCTCCGTTTCACAATGTAAGTGCTAGAAAGTCTTACATCGTGAAAGGGAGGGAGTACAGATCTGCCACGCCGTGTATACCCTTGTCGATGTATTAACAAAAACCCCAAGTGCTTATTACTCCCTCATTTTCTAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATACATAAAAGTATATTTACCAATGAATGAAATGATATGAAAATAATTAATAACTACTTAAATTTTTTGAATAAGACGAACTGTCAAACATGTTAAAAAAGGTTAACAGTGTCAAAGATTTAGGGATGGAGGGAGTATTAAAGATTTAATAGTAGAAACTTTAGTTAGCAAGTTGTTGAGAGATCATCTATCGATGGTTCAAACCAGTACGTCAATGATGAAGCAGGCATGCATGCTCAAATTTTTACATTTTGGTCCTTTCTGAAAACTTATTTTACAAATAGTCCCCTAGAAAAACTTAACCCGGGAATTATCCTTTTTGGAGCGCTAGAGAGGCTAGTGCCGTGGTCCAACATGGCGGCGCCGCGCCCGTGCCACTGTGGCACTAGGGCTATCGTGGCCGTGCTGACTGGGCAGAGGGGGGGGTGCTAGCCACTCTGGCACCGCCCCCCCATACGACGGTGCCAGCCTGGCTGGCGTACCCCTCCTGGGAGGGCCGCGCCCTTAAACCCCGTCGGCCCTACCACCTTTCTCCTCCCCACAGCCATTTGCGCCAAGTCCCAGCCCGAGCAGCAGTAGTTCTTCTCCCTTACTCTCTCCCCCTCACCTCTGCACCTCAAATCCACTCAATTTGAAGCCGTTTTTTTGCGGGATTTTTTGTGGAAATCGAAGAGAAAGGTAGACTCATCCATTCCCCCCTCTTTTTTTTTTCATTTTTATCGATTGAATTTGTAGATCGGAGGGTAACCCTAGAACCCCTTTCTTGCCCAAATTTGTGATTTTTAGCATATGTTCTTGGGATTAG PhaseCut76: +Start +End FragmentLength FragmentNumber 2346 2418 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGCCGTTGACTTTTTTAAACATGT 2344 - 9.68 2.66 10.49 3.87 5.71 0 0 0 44.79 10.36 5.14 TTGACCGTTCGTCTTATTCAAAAA 2368 - 0 0 0 0 0.74 0 0 0 0 0 0 TTTGTGAAATATGTAAAACTATAT 2394 + 0.2 0 0.22 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 PhaseCut80: +Start +End FragmentLength FragmentNumber 2347 2422 25 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GCCGTTGACTTTTTTAAACATGTTT 2345 - 1.18 0.22 1.31 0.2 0.25 0 0 0 7.34 1.32 4.21 GACCGTTCGTCTTATTCAAAAACTT 2370 - 0 0 0 0.2 0 0 0 0 0.37 0 0 GTGAAATATGTAAAACTATATGTAT 2397 + 0 0 0 0.2 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 PhaseCut85: +Start +End FragmentLength FragmentNumber 2348 2420 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTTAAACATGTTT 2346 - 44.63 28.56 79.54 17.1 22.83 0 0 0 285.99 61.19 92.36 GACCGTTCGTCTTATTCAAAAACT 2370 - 11.85 6.2 14.86 3.26 8.44 0 0 0 34.51 11.68 25.95 TGTGAAATATGTAAAACTATATGT 2396 + 0 0 0.22 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 PhaseCut97: +Start +End FragmentLength FragmentNumber 2349 2421 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2349 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 2371 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATATGTAAAACTATATG 2395 - 0 0 0 0 0 0 0 0 0 0.16 0 GTGAAATATGTAAAACTATATGTA 2397 + 0.79 0 0 0 1.24 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 PhaseCut98: +Start +End FragmentLength FragmentNumber 2349 2412 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTT 2349 + 2.96 0 1.75 0.41 12.41 0 0 0 0.37 0 0 TTGACCGTTCGTCTTATTCAA 2368 - 0.79 0 0 0.61 0.74 0 0 0 0 0 0 ACTTTTGTGAAATATGTAAAA 2391 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 PhaseCut103: +Start +End FragmentLength FragmentNumber 2353 2425 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GACTTTTTTAAACATGTTTGACCG 2351 - 0 0.22 0.22 0 0.25 0 0 0 0 4.28 0.7 TTCGTCTTATTCAAAAACTTTTGT 2375 - 9.08 4.21 9.4 3.05 20.85 0 0 0 12.85 0.66 6.55 AATATGTAAAACTATATGTATACA 2401 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123c 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123b 2338 2359 LOC_OS02G30290 8004 LOC_OS02G30290.1-3 osa-miR2123a 2338 2359 >LOC_OS02G31830.1-5 GTAAGTCATTCTAACATTTTCTACATTCATATTGATGTTAATGAATCTAGCATTAACATCAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATCTCGTATTCCTTATTCAACATTGTATCCTAGCCTAAAATGTTTTTATCTTCATATTAATTCTCCGAAGTTGCTGCCAAGTCTGGTAAGACATGATTTTAACCTGTTCTCTTGTAAATAGCTTTCAG PhaseCut15: +Start +End FragmentLength FragmentNumber 3159 3239 20 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTGATGTTAATGAATCTAG 3159 + 0.59 0 0 0.2 0 0 0 0 0.37 0 0 CATTAACATCAATATGAATG 3179 + 0.2 0 0.22 0 0 0 0 0 0 0 0 TGGAAAATGCTAGAATGACT 3199 + 0.39 0 0.66 0.81 0.25 0 0 5.65 0 0 0 TACATTGTGAAACGGAGGGA 3219 + 0.59 0 0.22 0.2 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G31830 6055 LOC_OS02G31830.1-5 osa-miR446 3142 3165 >LOC_OS02G32814.1-2 GTGAACCTGGTGCTAGTGCGTTTCCGTCGCGCTCATGTGCGTCATCGCAGCCATCTACGCTTGCAAGGTGGTCTTCTTCTTCGAGGCCGTCCTTGAGCGGCAAGGGAGTTGGGCGGCAAGCGGGGGAGGAGGTGGGTGCGCTCACCGCGAGGAGCGGGGCGATGTGGTCGCGGTGGCAGGGATCCCGGCGAGCCGCGCAGACGAGGGGGAGCGGCGAGCCACGCAGACAAGGGGTAGGAGGCGGGGGCGCAGCGGCGCGAGGGCGGAGGCGGAGTACATCGCCGGCCTGCACGCCATGGCGATGGCGGCGGCGGCGGCGGCGGCGGTGGCGAACGTTGTCGGGGAGATCCCCCACCTCACCCTATCCATGGCGGCCATCGCCACTCTTCGCTCCCCGGCGTCTTCGCTCCCCGGCGTCTCCGCCGCTCGCCACCGTCTCTCCTTGCCCGCCGCCGCCCTTCCGCCGTCTCCCAACCACCGTCCCGACCGCCGGACGCCACCGCCATCCCCACTGCTGCTCCGGGGGTGAAGAGAAAGGCTAGGGAGAGAATGAGAGAAGGGAGGGAGGAGGAAGAAGGGGAGGAGAGAGGATGACATGTGGGCCCCACATGGTCTGTGGGTCCCGCATGTCATCCTATGTGTGAATGATAAATGAATTTTTTTTAATTCTAATGCCACATAAGCGTCACGTCAACGCCACGTGTAAAGAAGATCCGGTCAGTACCGCCACGTAGGTGTCACGTCAGCAAAACCGCCCTTCAAAACCGTCAAGGGAGTCAAATTGCACCGGTTCAATAGTTAAGGGTCGAGATATCCGGTTTTGTGGTTTAGGGTCATGGATTAGATTCGGGAAAAAGTACACCGAAGGTCCCTCAACTTATCAACGGGATAAAAAACGTCCTCGAACCGCAAAACCAGATATGTGAGATCCCTTAACTATACAAAACCGGTCACCCGAGATCCTTCGGGGATTTTGACCCCAGTTTTGGTCTACGTGGCGGCTAAGTCAGCGTAGGTCCCACGTGGGCCCCACATGTCAGATGTCCACGTCAGCCTCCTCTCCTCCCTTTCCCCTTTTCTCTCCCTTCGTCATCTTCGTCAACGTCACGGCGAACCCGCGGCTCGGCGAGGCCGCGCTCCGGCGGGTCGGCACGTCGGCGGCGGCGGTGGACTGGCTGGTGGAGATGCTCACCTGGAACGGCGCCGCCGAGGCCGCCGCCAGGGCGTCCGCCGCGCTCGTCGTGTCCAAGCTAGCCAGCAATTAAGAAGCGGAACGCGCTCCGTGTCGCCGGCGTCCCTGGCGATATCAAGTCTGCGTCGTCGCTGCTCTACGTCGCCGACGAGGAGTGCAACCTCCAAGGCCTCCTCATCATCAAGAAGCTGACGCGCAACCACGACACCTGCAGCAAGATTGGCAACGCAATGTATTTGATAGGTGGAGCACATGCTGTCAAGAAAAAACCAAGTTCCATCACAATTGAGTTCTCCCGTGGGAATTATAATAAGATTCTATCGTGCCTCTTCTCTACCAGTGATTTGGAATATCTACAGATAGAAAGATGCATCATGAGCTTGCCTCGAGAGTTTGAAGGTTTTAAGCAGCTAATTGTTCTGAATCTGCATACACCTAACCTGTCCAATGTGTATGTTACACTCGACAAAACAAAAGTTGCAGACAGGAGTAAAAACTATATGATGCAAAGCTTTTGTCAGCCTAACTGAAATAGAAACACTTGTTATGAAAAGATGTATGGTTGCGTTGCCTCAAATTTTTTTTTTGATGAAAGGCCAAGGCCCAGCTTTCATTAGAAAAGCATAAGAGTACATGTATGTCACACCCCAATCCGGCACCGCCGTACAACGGCACCTGATAGGAGCGTGTCGTAGGAAAAACGGCGCGAACCACTTCCTACGAAACCGCGATCTCAGTACCAGTCCCAGGACATAGTGCTGGTACCCACAGTGACAAATATGAATCATTGCAAATCCTTAAAATAAATAGAGGACTTAATTACCTTAACTTAGGTTGCAGCTCAAAACAGCCCGAGAATGCAACCGACGACGCGAACGAGGAAACACCAACAACAGCAGCAGCAGCGGAACCAACGAACTAACACTCAACACCACAAGCGACGGCTGGGAACCAAGACGAAACCCTATTCTTTACTTCACTTCATCTTCAACTTCCGGGCGGAGGAACTATATATATTTATATAGAGCAAGGGTGAGTACTTTCGTACTCAGCAAGTCACGGGAATTTAGGTGTTTAATGCAAGCTTGGAAGAGAGGCTAGGTTGTTTTGCAAATCTTTTATTTTGAAATCATTTTGAAATCACTAAGTGATTTATTTCTTTCTAAGTTTGGGCCGAAAAGAGACTTGCGTCTCGATTCGACTTTAAGAGATGTTTTTCAACAGCTCATTTGGTAATGTACTGACCTCCCGGGTCAGATCATTACTTCTCGGCTCCCAGAGCCATTCCACTTGATTAATCGGCTCCCAGAGCCTTTTTCATTTTCTCGGACTCCCAGAGTCCAGCTGCCCAGCAGCACAGCAATCCGCTTCCACTCGGGAAGCCTAGTCTATGATGCCCGTAGACATCCCGAATCACACAGATTCGTTTCTTGACCACTCAGGTCATCCATCTGCCACATAGGCTGATTCTGGTAACGATTCTCACACCACAACAACTTTTCACAAAGCACAGGCAAACAAATCTACGCTACAGGAAACACCTCACATCCGCCCATGACCGTGGGCACAGTTGTTCGAACAGTTAGTTAACCTCTGCAGAGGGGGTACACTTTACCCACACGACATTACTAACCCGGATCACCCAGCCCGTGAGATCAGCCACGTCGGGAGACCCTAAGGCTTTCATGACAAGGCATTTCGAAAGCCAACACAGGTTTACCATATGCCAACGAGAGGGGTCCCAGACCAACACCAGATTAGGTCCCAAACCATACTGTGCCAGGAAGCCCGGGGGTTCTCCCCGACACCACCCCGTTGAATCCACATGTCTCTTGGCATCATGGCTCTCTCGATTAGCTAATTACTTAGCCAGGGGCGTCCCATTGCACCCGTGTGGTCGCACTTGTTATATGCTCGGATGAATTTCCCACAGGAATCGGTCCTTATATGCGAATACGGGACAGTGCCACACAGGCATAACCCCCGCATCGCGAGTTTTCACAATTTATTTTATTTTCAAACACGCCGACACCACATGTCGGGTTTTCAAGGCTTCTCAAACCCATTCCCCAAGTTATCGACAAACAATGGTGTATGTGGAATAGTTGGTATAAGCGCTCAGAGAGCACGGATACCGAAGTACCACAAGAGTGGAGCGACAAGGAATCAGGGTAATACGACCTACAGGAATTAGTGCGACTACTGGGTAGGTCCGTCGGTTTGGCACGCAAACCGAGGCCAAGCATGTTAAGTGTGTGATTCTACTAATGCAAGTTGCAAACAAAATAATAATGATTTTCCAATTATAGGAGCAATTGGTCAAATGGTGACTTGCCTTGCTCAAAGTCTTCACGAATCTTCGAGAAATCCCCCGATCGACAAAAATCCGGTAACCACAACTATACGCAAACAATCGAAAACCTAAACAAAAGACCAAAAGAAAGATCCTATTTAGACTAATTAGTAGTGCCATTAGATAGATCTCAATTTTAGAGAATTACTGGAAGTGTAACGGAGTCAATCGGAGTTACAGATCGGGAGATATGAATTTTGGAAGTTTATTTGGAATTTATGGAATAAGAGGAATGGTTTATGGAATTTATAGAAATAATATTCTCAAGAATATTATTGACAGTCACAGACGCGCGGGACCAAAGGAAATGATTTATGGAATTTTAGGAATAAGGAATTGATTTATGAAAAAGGGAAAAGGATTTATTAATCCTTTGGATAAGAAAAGGAAGGAGGGATGGGATTTAGACTTCCTTGGGCGGCTCGGGTACGGCCCAAGGGATAAGCGCAGCACGGCCGAGCCAATGGGCCGGGCGCGGGCGCGAGGAGGCGGCCCATGGCCGGGCAAGGCGTGGCCCAAGCGAGCGGGGCACACGGGAGGAGAGAGGGGGGATGGGTCCGGGTGGACCGGATCCATCGTGCCGGGTCCCGGGACGGGCCCACGAGTCAGCGACTCGGCGCACGGGGGAAGGGTTCATGCGGCGCGGGGCGCTAGGGTTTTGCGGACGCGGCTCACGGCGCGGCACGCGGGTGGACCAAGAGGTGGAGGGCCCATGCGCAGCCTAAGGGCTCTCCGTGGACCGCACGCACAGAAGAAAGGGCGGTGGGGGCGGCTGACTAGGTGTTTGACCCGGTCGCGGCCGATGTGGCGCCGACGTGGCGCCTTCGTGGCAGCCACGCGAGCCGGCGAGAGGAGGAAGAAGGAGGCCGGCTGATACGGACGGCGGACGGCGGCGGCTTCACCGGGAGCACAACCCGACGATTCGAGAGGGAGGGAGTACACCGGAATGATGACTAGGATAAGAGGGAGTGAGCCTCTAGCTCGGATTCGCCGCGGGGATTCAATGGCGACAGATTTCGACGGTGGCGGCCGGCGGCGATCAAAAGGGGAAATCGCGGCGGGGCGACGAGAGGTCGATTCCTAGGGACTTGAGCATCTACGCGACCTCCAGAGTTCATTTCTAGAGTCGGATTGGGTGGAGCTACACCGAGGAAGGCCGGCGATGAGCGGCTACTACCGAGTTTGGGCGGCGACGGCGGCGAGCCTACGGCGAGCAGCGGCGGCGGTCGGGGCGGCGCCAGCTTGCTACTGGAAGGCTACTCGCACTACTGCCCAGAGCTAAGGAGAGGAGAGGGAGCGAGGAGGGAGAACGGGAGATGCACTACCGAGCCGAGACGGGCGCTGTGACGAGTGGCCGACGACGCGGGAGCGAGCTCTCCGGCCTCGGGCTGGGGAAGGGGAAGGAGACGGCGCCTGGAGTCCCGCGTCAGCTCCTCGCGCGCACGCCGGCTTCACCAGCACGCGCGATGGAGGAGGGAGGCGAGGACGGCGGTAGCAAGGCGGCAAGGGCACGGTGGTGGCGAGGGAATGAACGAGAGGGAGATGGGGCGGCTCGGTTTAATAGATGGCAATGTCGGTTTAGGGAGGAAGAACCGACATTGGCGGTCAAGGAGGAGCGAGCTGGCGGTGAGCTGGTGCAGTCGCACGACCAGCGTCCGCGCTTTGGCCGCGAGCGGCTGGGACCATGGATGACCTCGGCGGTGGTCGGGAAAAAGGGGAAAGGAAGAGGGAAAGGAGGGCTTGACCCTTGCTGAAACGGGAAAAGGAGGAGGGAGAGGGGAGTGAGACAGGGGCTGCCTCTCTCGGCCTTGGAAGCTAGCGGCGTGGAGCGGCGGAGCGGCAGGGCACGATGCAGGCGGCGCCAAGGTTTGACGCAGCGGCGACCGGGGCGTTGGCCACGCGCAAACCCGCACGGGAAGGGCGAAGGCGGTGAGAGCGGCGTCCTTGCCGGTCGGCCATGCGCGAGCGCACGGGAAACGGCGACACGGCCGGAATTTTGGGGCGGCGTCGGCGGGAAGCGACGCCGAGAGAGAGAGAAAAAGGAGACGGCGCTGTCTCTCGCTCCCGAACACGTGCGACGCACGCGCGAGAGAGCTGGGCCGAGAGGAAGGGAAGGGCCGGGAGAGAGGGATCAGCCCATCGACAAGGGAGGCAAAATAGACTTTTGCTGAAAGATTTTGATTTGGAGAGATTTGGAGTTTGGGTTTTGAATCTAAATTTGATACTTTGTACACAAGGGTTCAAGGAGTCAAGGAAGGAAACAAAACGGGAGTTTGGATATTTTGGGATTCGGAAATGTATTTGGCGAGGATTCAAAGGAAGGGATTGACTTTCGGAATTAGATTTCGGAGACTTGAATTGGAAGAGGAAATTTGAGGCGGAGGATTTTGATTTCGATGAGAGGGAACAACGGGATTTGAATTGAGATCCATGGCACGACTTAGACTCGCACACAAAGAACAAAATTTTCGCAATTAGGATTTTACCGAATTAGTTTTTAACGTCTCACGAGAAGCGGAGCGTTACAATGTAACTGCTGGGGATTCCAGCTTACAAGTAGCGCAGAAACAAAGACAAAGGCAGAAGCATGAGATGTTGACGCAGCAGCAAAACACACACCCAGTAGACAGACAGAAGAAGCAGGAAAAATAAATCACTGAAAAACTCCTAGCTGCTTGAACCTCCTGTCCCGCGGACACTGGCAAGCAGTGATCCTCTGGCCTTCTCCATCTCGTCCCTCAGCTGCAGCGGCAATAAGGGTCCCCACTGTTTCAAAAATGACAGAGCTTTGTGAGGAAATGAGACCGTTGCCTCAAATGTTCGAAGGTTTCAAGCGGCTATCTGTCTTGAATCTGAAATATATATACTCAACATACGCCTCCTCGACAATATCATCGACTTCTCCGCCATCGGCGCCGGATCAGTCGTGATCACGCCGACGTGCGCTAAGGCCGTGAAGCGATCGCTGCAAGTGATAAGATGCTCACGGAGATGGCGGGGAGCACCGGGAAGCTGCTCCGGCGGGAGGTCACCGAGATCGTGTTCACGGTGAGCAACATCCGCGCCGTGCTCCAGCATGGAGCCGGGCACCTCGAGCTGCAGCGGCTCGGCGCCGAGGTGCGCCGCGGCCGCATGGGGCGTAGCCTGCCGCCATCGCCTCCGCTTCGCTCTCACGCCGCCTCCACCGGCCGCATCCTCCCGTCCGCGCTCTCCGCCGCGGAGAGATCGAGTGCCGCCGCATCCTCCTGTCCTCCCCCTCTGCCGACTCCCTCCTCGCCGCATCCTCTTCAATGGAGAGCCAGACGAGGCCATCTGGCGCGAGGCGGGAGAGGAGATCCAGTCGACGACACGGCAACGGGCAAGGCCGACGCTAGTGCCGCCCGAGCTCCTCCAGCAAGTGCCGCTTCGATGGCGGCTACGTCCCCCGCCGGTCGCCGCCCGTGCAGCTGCTGCCCCTCCGCCTCTGCCCACCCGCGCGCTGCTCCGCTGCCTGCGCCCGCCGGCTGCCGCCCGTGGAGGAGAGAGAGAGAGAGAGAGGGGTAGGAGAGGTGAAGAGGAGGGGAGAAGAGGCTGACACGTGGGGCCCACGTGGGTCCACGCTGACTCAGCCACCGACGACCGTGGTCAAAGCGCCACGTAGGACAAAACCGGGATGAAAACCGCCGAGGGACCTCGGGTGACCGGTTTTGTATAGTTAAGGGACCTCGTGTGTCTAGTTTTACAGTTCGAGGATGTTTTTTATCTCGCTGACAAGTTGAGGGACTTTCGGTGTACTTTTTCCTTAGATTCGGGTCACTTTTTAAGGGAGTCAAAATGAACTTATTCCTACTGAGGAGGAGGTCCCCTGCCACAGGTCCAGTATCTCCGGTTTGCTGTGATTGGGTCGTTTGCGCCAATGGGCTTCCAACTATCTGGGCCAAAATGGAAAGCCCGGACAAGATGCAAATCACATTCCTTCGGGCTAGCAAACATGCAAGGAATAAGTTCACTTGTTGTCCTTCCATTTGTCGCCAAGCTTAAAATTTGTTCTGGAAACGAAATACCACTTACTCCCTCCTTCCCTAAATGTTTGAGGTCATTGACTTTTTTAAACATGTTTGACCGTTCATCTTATTTAAAAACTTTTGTGAAACGTGTAAAACTATATGTATACCTAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAGTTACTTAAATTTTTTGAATAAGACGAACGGTCAATTTTTTTAAAAAAAGTCAACGGCGCCAAATATTTTGGGATGGAGGGAGTATAACCCATCCCTAACTCACAATACCATGTCAAATTTGGCCCCTCAGTAATATAGTGACCAGTTTTTTATGACGTTGCGAGTGGGACCCATATAGATCCACATATCAAGTGCCAACTCTTCTCCCTCTTCCCTCTCTTTCCCATCTCTCAGATTCTCAAGTGTTGGAGCAGGGTGTTTGCTAACTGGTGAGGAGGGGGCTGCGATGGTCTGCCCCCATCCAGCGAAATCTCTTCACTCTCTCCTATCAGTTCAGTCCTATGGTGGCAGCTCGGTGGTGGAGCGATGCTCGGAGGAAGGCGATCGGGGCGCCGCCAACATGTTTCTGGCTTTGGGGCCGGCACAGCATCAGTGGCGGAGCTCGCGAAGGAGAAAGGTGGCAGCCGACGGGGTGGCGGTGGTTGGCAGTGGATCCTCGGCTCCTCGCCGGTTGTTGCTTCCGCCACTGGTGGAGAGATGGTTTGTAGTCCCGGTTGGTAATCCCTTTGTAGTCCCGGTTTTCCACCGGGACTATGAATCCGGGACTAAAGATCACTATCTTTAGTCTCGGTTGAAATAACCGAGACTAAAAATACATCTTTAGTCTCGGTTGGTGTTAGATAGTAGCACAGTCCCGGTTGGTCACCATTTTTTTCTTTTCTTATATTCTCATTGTTTCTTTCCAAAGAGTTGCTCCTTCCCAAATCTCCCCAAATATCCCAAAATCAAAGTATCATCCCAAGTCAATGAATCATTCACATCACAAATTCTCAAAAAAATACAAATCAAATTCTTAAAGAAATACATCACAGATCAAACATCAAATAGATCACACATCATATACATCACAGATCCAAACATCACAAGTTCTTAGATCCAAATGTATCACAAATTCAGAAAAAAAAAAGAAAATTGTGCTTTCGTTGCCGCCTCCCTCCTCCGGCAGAGGAGAGGGCACCGCCGGCCGCCACTGCTACGCTCCCTGCCGCCCGCGGCCAGCCGCCAGCCGCCGCCGCCCGGGCTCGGCCCCCTGGACTTACTCTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGGGAGGGGGAGGAGAGGGGAAGGGGAAGGGGAGGAAGGGGAGAGGAGAAGACTTGCCAGCCAAAATGCCAGATCCGATCTGAGGACTTGCTGTTTATGAGAGCATAGGGAGTAAAGAGAGAGAGGAAGGGGAATGGATCGATAAGATCGAGACTCTGGCGCGCGCGGGTGGTTTATACCAACCGGGACTAAAGATAATTAGGGTCTAAATTCGACCCGACAACTTTTTGAACCGGAACTAAAAATGATCTTTAGTCCCGGTTGGTGTTACCAATTGGTACTAAAGATCAAAATTTTTTTAACCGGGACTAAAAATCGTTTTTAGTCCCAATTTTTAATGGAACCGAGATTATTATGGAATTTGGTGGACCGACCAAAGATGGTTTTTCCACCAGTGCGCTGTTTTCATTCATCAATATTCAGATAAACACATCGATAGTTGAGACTGAAAAATCAAAAGAAAATCTGAAAAAACAGTCACAACGTGCTGAAGTTAGCTCCAACAGATCACATCAATCATTGCTAATTTGCTATAGCCAACAAAGTGGACCAAGGACTAGCGACGGGGGCGATAGAACTAGGCCTAGGTGATGCAAGCAAGAAGGATCGAGGCAAAACGAAGCTAGTTGAGCAGATCGAGCCCGAGACGGCTCCGGCGGTGCAGATCGAGGCACGCATGCTTTGCCCCACGCCTTGGGATGCAAGCGGACCGACCGGCAAACCTACTTATATGTTAAATAAAAAGTAATCCACAGGTTTTCGCGTTATGACTCTGCTTGCCGCGTCATAGAGGTGCAAATGAAACAACCCATAAACTCATTTATAGGCCAAATTAGTAGGTAACCCGCGGGTTACTCACTAATTTTACATATAAGCGGGTTCGCGGGTTGGCTCACTTGTATCCCTACCCACGCCCCCTCCATTCCCATCCCCACGCGTGCCAGTGCTGTCAACCTCGAGCTCGATGGGCTCATGGTCATCGTCGACGCATCGTTGCCTTCATTCACTGCTAGACCCAACCATCACCAGATCCCCTCTTGTCGAGTCTCCTCTAGCTGCTGCGGACCGCCGCATCCCCTCCCCCCACCCCCCCCCCTCCCCTTGCTAGCCACCCTGCTCCAACGCTTGAGAATTGGCAGTCGATTGTGAGGCTCACGTGGATACTACTCATCACGTCAGCCAAAAACCAGTCACTATACTACTGAGAGACCAAAGTTGACACGGTACTGTGAGTTGGAGATAGGATATAGCTGGTATTTCGGTTCAGGCACGAGTTTTAGACTCGGTAAACAAATTAAGGGACTTAATATGAACTTATTGCAACATGCAAAATCTCGATAACAAAGGTAATCTCAGTTAGACAAAAGGGTATACATGGGCCCAAAGACAGTAGCTCAAAAATTTTATATACCGATAAGGATCACCTATATATTTGTTGACAAATTTTCTTTCAAAAATTTGATAGATGTAATTATAGTACAATCGTGATGTAATTACCCTGTAATTTGCATGTAACTATAATGCAACTTTCAAAAATCTCTCCGTGACATGCTATTTTGGTGAAACGGAAGTCGTGGGAACGAATCCTCTCACATGTGTGCGCGTTGTGACTTTTTTTCTTTCTCACATGCATAAATCTTGAAACAAACATAACGGTTTAAAATTATATGAAAGTTACATATAAGTAATATTGTAGTTACATGTAATTAATTATATTACGATTGTACTGTAATTATATCAGTCAAATTTTCAGAAGAAAATTTATTGATAAATATATAGCAAAATTATACCGACATATACTGTCATTTTCTTTTTTGAAAATATATACATACGTAAAAATACTTATATAAATACGCACCCACTCACCCCTATAAATATTCACTATTCATATGAGCACCTTCAAAACTGAGCATATAAAATTCACGAAGTCACCGCAAACACATCATATATTATTGTTGATAGGTACGTCGTCTACATTAAAAAATAATCAGATGTAAATATAAATATTTATGTTAAAATCTAAATCCGTATAAATAGGTTCCGCCGCGAAGAACCTAAACCGTTAAGTTACTTCTCACTTGTTGGCAACTTGGCATATGCTATCATGGCTACATGCGCATCTTAATTCTTTCTAAGATTAATTTATTTGAGTGCAATTCGGCTACGTAAGCCCGATGCTAGTGCTGATACCGTTAGCACCGGCGAAATGCTCTCGCATGATTGCTTCTCCCAGACAAATCGGCCGATCAACTAGCCTAAAACCAGCTGGGTCCCAATTCCTCTTGGCCTAGGCACCACAAAATCCAGCGCGCTCTGATTCTCAGCCTGCTTAGGCAGTTGGCAGCATGTGAATATATCCTTAAAATGTGCAGTGCAATTAACAGAACTCGCTAGATGCAATTAAATGAACTGGTGATGCAAGTGACAAAAAGGAGAACATGGGATGCCAAACTCCAGCTTGGAGACGACTGTATATTTCAACCCATATGACTTCGAGAACCCAGGATATTTTTCTGTGATCATCACTAAAATCAATCAACCAAAAACCCATGCTTTGCCATGCTCTGACAACGTTACCACAACAGGATGAAATAAATAAACAAATAAGCTCAAACAGATGAAACGAACATGAGGTGAAAAACTGTAATTAATCAAAAGAGGAAAAGCATGAAAGAGGAAAACCTGGTGACATGGGGTGAAATAACTGGTAAGGTGTGTCTGATCAGAATATGAGAATATCGGATACCAAAAAAGTCAGTAGCAGCAGCAGCAAATGGGCAAAGCGATAAGCACTCCAAAAACTTGAGAATCTCGCAACTTTTTTGGGCAAGCGGGAGGTGATCTTATTTGTTGCAAACTGATTACAAGCAGAAATTGTACATCTGTACTACACAATGGGAGAAGAAAGATGTGTTGTACTTCGTGTACTAGTTGTACTACACACTACCCAGCCTCAACCAAAGCAGGATGGCTTTAGTTTAGCCCAGATCAGGGCATCTACAGAAAGAGAAAACCTCACATCGATCCGTTTGTGAGGAGGATGGGGGTGGGGGTGGCTTTTCTCCGGGGCTTTATGCGTGTTTGGTGCACGTCCACCCACCGGGCACCGGTCACCGTCTTCTGCTTCCTCGCTACGCATCATCTTGTCTATTTAAGGGTCCTCCGATCCATGAAGCTACCCCAAGTTATCTCCCGAATTCGAGTCCTGTTCTTTTTGCTGCTGCTGCTTCTTGTTCCTACTGCCGTGAACCATGGCCGCTGAGGTAACAATCTCCTTCCACGCCTTCTCAGATTGCATAGATGCAGTCAGTAGGATGGAGTAGGAGGAATGGATGAAATTTCTCGTTTTGCTTCTTTTTTTTTGTTTGTTTTTCTGGATGAGTTTCAGATACAAAGAAGTAGGCTGTAGGCCATGAGGTTGCTGAAGTTAGGTTCTTGTTAGATACAGAGAATTTTGCTGAATTTTGGCCATGAGTCCCCTTGTTAGATAGAAAACTGATGCTTGTTGGTCTGCTAAACGGCAATGTCAGAATACAAGATAATAAAAATGTTCAATCTCATATGATATGCAG PhaseCut252: +Start +End FragmentLength FragmentNumber 8279 8351 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTGACTTTTTTAAACATGTTTGA 8279 + 5.33 2.66 9.4 1.43 38.47 0 0 0 74.53 3.62 5.61 GACCGTTCATCTTATTTAAAAACT 8301 - 0 0 0.22 0 0.25 0 0 0 0 0 0.47 TTTGTGAAACGTGTAAAACTATAT 8325 - 0 0 0 0 0 0 0 0 0.73 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G32814 14038 LOC_OS02G32814.1-2 osa-miR2123c 8269 8290 LOC_OS02G32814 14038 LOC_OS02G32814.1-2 osa-miR2123b 8269 8290 LOC_OS02G32814 14038 LOC_OS02G32814.1-2 osa-miR2123a 8269 8290 >LOC_OS02G36140.2-2 GTAAGACTAATTGCAGAAATTTTGATGGAAGATCTGTTAAATTTTTGTCCACTAGAGACGTAGTTAATTTGAGATGGGATGAGTAAAAAGTTAACTTATTTTGTGACTTCCATACCACTTACATCCTATATACATTATAATTAATTACATGCTAATCTCTACTATTATAAAAATTAAAGATGTTTTTGCCAGTATTTTGGTACATCATCTGTGTATGAGTCAGTTTTTAAGTTCAATTACTTTTGAAAATACATATCTATATTTGAGTTGGTTTTTAAGATCGTTCACTTTTGGTAATCATATAAGAAATCTGTTTAAAAAAACTCGCATGCTAACCTGAGACGATCGGACTCCTAACTGCAGCTCAGGATTTTCTAAAAATATATATATCCAACCGAACCCCCACAGTGAATTTCATCTTAACTAAACCATATAACAACAATAAGATTAAAATAGACTTCACCCGTTGCAATACAATGGCATTTTTTCTAGTCCTATAATAATTATAATATAATTATACTATAATTATATTTGACAGATTTTGTAAGGTTTTCTGTTGAATGATGGATATGTAGTCCCTTATTTTTTAAGTTAGGGTGACAATACTATAGTTTAATTTGGTGGGGTCTCAAATTTTTAAATTTGGAAACCATTGTAAGGAAAAGTATTGATTCAAAACATAAGCGCAAGTATTGATCCCTTGCTATTTGTTTGCTTAGCATGCATGACAGGGACAGTCTTGTAGGCGCCATGGTCCATGGAAGTTTTGCACCTTGCATGACTTGTTCTGGACACGTACGCATGCATATCAAAGACTGGTATAACAGTGTTCTAAAAAAAGACTGGTGTAACAGGACTAATTAGCATGAGTCTTCTTTGACACCGACTTGTGTTTGTCTTATATACAATATTAGATACGCATATATTTCCTCCGTTTAACATTTGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATTAATATGAATATATGAAATGCTTGAATGACTTACATTGTGAAACGGAGGAAGTATATCGCAATCAACGAGGTACACGCAGTAAATATTATGACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACACAGGTGATTTTTTTTAATGTTTGATAATATTTAGTGCAAATATGTAAAAGTATATGTTAAGGTTAGAGTTAATTTCATGGATGATAAAAGAAATCATAACAAAATAAACTATATAATTTTTTGAATAATTAATATGAATAGTCAAATGTTGAACTAAAAGATAACAGCGTCAAATATTAAAAAAAAATGAAGATGCATAGTAGATTGGATGTCCAACTTCTTTTCTTCGTTCGATTCCTTAATTTGTTGGAGAACTTTCAACCATTTAGGATTAATGAAAGACTGTTTAGGATTTTAACTACGCAGGATTAATATATATGGAGGATAATAAGAGGGTCTCCAATTAATTAGTATGAAAAACTACCCAAACCCATGAATCCGTACATGCTACGTTTTCGTCCTATCTTACGATAAAGATAGAACCCACTAAATCCTAAAGTTCAATATGCAAATATATCATATTATCATCTTCTAACAATTATTATATCTTAAATATCATACAAGCATGCTATATTATCTATAATTTTATTCTATAATTTATTAAATTTTAGAGCTTTAAAATGCAAGCATGTTAAACCACCATCCTACATAATTTATATAATATTTTAATATATCATCTCTCCATCATTTATTATAATATCCTATATACATATATATTTTATCCTCACATAATTAGTATTATTTCTCTCTTCTATAATTAAGCCATATCACACAATTATTTCTAGCTCTTAGATGATTAATTTATGGTCCAAATTATCCTGCTCTTTTTCTTCTCACTATACCACCTTAATTATTTTTAACCCTTAAATGACTAACCTATTGTCCAAATTATTCCCCTTCTTTTCTTCTCTCTTAAAACCCCATCACTTTATTTTTACATTTAAATCATCATTCTATGTGCTATTTAAATCATCATAAACCACATCAACTTATGTAAACTTATATTATCTAGCTATCTTACATATTATTTTTATCTATTGTTATTATACTAAACTCCCGTAGCAATGCGCGGGGTTTCACATAGTGGATTGAACAACTAATACCGTCTCATTATTTACTAATACAGATTTTTAGAGTATTACCCGCTCTTTAAAATATTACAATTTAGATTCTAAACTAAGCACATCACTATATGTTATTTTTCGAATTTTTGAAATGACTAAATTATAAAAAGAACTAGTCGAGAATTTAGGTCAGGTACATCTCAATATTTGTATTTCTTGATAGTTAAATTTATTAGTAGTTCCGAATTTTCAAATCAATAAAATAAAATAATATATTGAGACAATAAGCCTAACACAATGCAACTTGATATTTTCAATACACAATTGTTATTGTATATAGAAAAAATATATGGATCTTGCACTATATCCTTTGTTGAGTTCATTATATATTGTTGTGATGAACGCTGCAG PhaseCut89: +Start +End FragmentLength FragmentNumber 1457 1505 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTCATATTGATGTTAATGAATCT 1457 + 5.53 3.1 8.96 3.05 9.43 0 0 0 13.95 0.66 14.26 CTAGACATATATATCTATCTAGAT 1479 - 0 0 0.22 0 0 0 0 0 0 0 0 AGACATATATATCTATCTAGATTC 1481 + 0.2 0 0 0 0.25 0 0 0 0.37 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G36140 8410 LOC_OS02G36140.2-2 osa-miR446 1446 1469 >LOC_OS02G36140.3-2 GTAAGACTAATTGCAGAAATTTTGATGGAAGATCTGTTAAATTTTTGTCCACTAGAGACGTAGTTAATTTGAGATGGGATGAGTAAAAAGTTAACTTATTTTGTGACTTCCATACCACTTACATCCTATATACATTATAATTAATTACATGCTAATCTCTACTATTATAAAAATTAAAGATGTTTTTGCCAGTATTTTGGTACATCATCTGTGTATGAGTCAGTTTTTAAGTTCAATTACTTTTGAAAATACATATCTATATTTGAGTTGGTTTTTAAGATCGTTCACTTTTGGTAATCATATAAGAAATCTGTTTAAAAAAACTCGCATGCTAACCTGAGACGATCGGACTCCTAACTGCAGCTCAGGATTTTCTAAAAATATATATATCCAACCGAACCCCCACAGTGAATTTCATCTTAACTAAACCATATAACAACAATAAGATTAAAATAGACTTCACCCGTTGCAATACAATGGCATTTTTTCTAGTCCTATAATAATTATAATATAATTATACTATAATTATATTTGACAGATTTTGTAAGGTTTTCTGTTGAATGATGGATATGTAGTCCCTTATTTTTTAAGTTAGGGTGACAATACTATAGTTTAATTTGGTGGGGTCTCAAATTTTTAAATTTGGAAACCATTGTAAGGAAAAGTATTGATTCAAAACATAAGCGCAAGTATTGATCCCTTGCTATTTGTTTGCTTAGCATGCATGACAGGGACAGTCTTGTAGGCGCCATGGTCCATGGAAGTTTTGCACCTTGCATGACTTGTTCTGGACACGTACGCATGCATATCAAAGACTGGTATAACAGTGTTCTAAAAAAAGACTGGTGTAACAGGACTAATTAGCATGAGTCTTCTTTGACACCGACTTGTGTTTGTCTTATATACAATATTAGATACGCATATATTTCCTCCGTTTAACATTTGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATTAATATGAATATATGAAATGCTTGAATGACTTACATTGTGAAACGGAGGAAGTATATCGCAATCAACGAGGTACACGCAGTAAATATTATGACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACACAGGTGATTTTTTTTAATGTTTGATAATATTTAGTGCAAATATGTAAAAGTATATGTTAAGGTTAGAGTTAATTTCATGGATGATAAAAGAAATCATAACAAAATAAACTATATAATTTTTTGAATAATTAATATGAATAGTCAAATGTTGAACTAAAAGATAACAGCGTCAAATATTAAAAAAAAATGAAGATGCATAGTAGATTGGATGTCCAACTTCTTTTCTTCGTTCGATTCCTTAATTTGTTGGAGAACTTTCAACCATTTAGGATTAATGAAAGACTGTTTAGGATTTTAACTACGCAGGATTAATATATATGGAGGATAATAAGAGGGTCTCCAATTAATTAGTATGAAAAACTACCCAAACCCATGAATCCGTACATGCTACGTTTTCGTCCTATCTTACGATAAAGATAGAACCCACTAAATCCTAAAGTTCAATATGCAAATATATCATATTATCATCTTCTAACAATTATTATATCTTAAATATCATACAAGCATGCTATATTATCTATAATTTTATTCTATAATTTATTAAATTTTAGAGCTTTAAAATGCAAGCATGTTAAACCACCATCCTACATAATTTATATAATATTTTAATATATCATCTCTCCATCATTTATTATAATATCCTATATACATATATATTTTATCCTCACATAATTAGTATTATTTCTCTCTTCTATAATTAAGCCATATCACACAATTATTTCTAGCTCTTAGATGATTAATTTATGGTCCAAATTATCCTGCTCTTTTTCTTCTCACTATACCACCTTAATTATTTTTAACCCTTAAATGACTAACCTATTGTCCAAATTATTCCCCTTCTTTTCTTCTCTCTTAAAACCCCATCACTTTATTTTTACATTTAAATCATCATTCTATGTGCTATTTAAATCATCATAAACCACATCAACTTATGTAAACTTATATTATCTAGCTATCTTACATATTATTTTTATCTATTGTTATTATACTAAACTCCCGTAGCAATGCGCGGGGTTTCACATAGTGGATTGAACAACTAATACCGTCTCATTATTTACTAATACAGATTTTTAGAGTATTACCCGCTCTTTAAAATATTACAATTTAGATTCTAAACTAAGCACATCACTATATGTTATTTTTCGAATTTTTGAAATGACTAAATTATAAAAAGAACTAGTCGAGAATTTAGGTCAGGTACATCTCAATATTTGTATTTCTTGATAGTTAAATTTATTAGTAGTTCCGAATTTTCAAATCAATAAAATAAAATAATATATTGAGACAATAAGCCTAACACAATGCAACTTGATATTTTCAATACACAATTGTTATTGTATATAGAAAAAATATATGGATCTTGCACTATATCCTTTGTTGAGTTCATTATATATTGTTGTGATGAACGCTGCAG PhaseCut89: +Start +End FragmentLength FragmentNumber 1457 1505 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTCATATTGATGTTAATGAATCT 1457 + 5.53 3.1 8.96 3.05 9.43 0 0 0 13.95 0.66 14.26 CTAGACATATATATCTATCTAGAT 1479 - 0 0 0.22 0 0 0 0 0 0 0 0 AGACATATATATCTATCTAGATTC 1481 + 0.2 0 0 0 0.25 0 0 0 0.37 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G36140 8410 LOC_OS02G36140.3-2 osa-miR446 1446 1469 >LOC_OS02G36140.4-2 GTAAGACTAATTGCAGAAATTTTGATGGAAGATCTGTTAAATTTTTGTCCACTAGAGACGTAGTTAATTTGAGATGGGATGAGTAAAAAGTTAACTTATTTTGTGACTTCCATACCACTTACATCCTATATACATTATAATTAATTACATGCTAATCTCTACTATTATAAAAATTAAAGATGTTTTTGCCAGTATTTTGGTACATCATCTGTGTATGAGTCAGTTTTTAAGTTCAATTACTTTTGAAAATACATATCTATATTTGAGTTGGTTTTTAAGATCGTTCACTTTTGGTAATCATATAAGAAATCTGTTTAAAAAAACTCGCATGCTAACCTGAGACGATCGGACTCCTAACTGCAGCTCAGGATTTTCTAAAAATATATATATCCAACCGAACCCCCACAGTGAATTTCATCTTAACTAAACCATATAACAACAATAAGATTAAAATAGACTTCACCCGTTGCAATACAATGGCATTTTTTCTAGTCCTATAATAATTATAATATAATTATACTATAATTATATTTGACAGATTTTGTAAGGTTTTCTGTTGAATGATGGATATGTAGTCCCTTATTTTTTAAGTTAGGGTGACAATACTATAGTTTAATTTGGTGGGGTCTCAAATTTTTAAATTTGGAAACCATTGTAAGGAAAAGTATTGATTCAAAACATAAGCGCAAGTATTGATCCCTTGCTATTTGTTTGCTTAGCATGCATGACAGGGACAGTCTTGTAGGCGCCATGGTCCATGGAAGTTTTGCACCTTGCATGACTTGTTCTGGACACGTACGCATGCATATCAAAGACTGGTATAACAGTGTTCTAAAAAAAGACTGGTGTAACAGGACTAATTAGCATGAGTCTTCTTTGACACCGACTTGTGTTTGTCTTATATACAATATTAGATACGCATATATTTCCTCCGTTTAACATTTGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATTAATATGAATATATGAAATGCTTGAATGACTTACATTGTGAAACGGAGGAAGTATATCGCAATCAACGAGGTACACGCAGTAAATATTATGACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACACAGGTGATTTTTTTTAATGTTTGATAATATTTAGTGCAAATATGTAAAAGTATATGTTAAGGTTAGAGTTAATTTCATGGATGATAAAAGAAATCATAACAAAATAAACTATATAATTTTTTGAATAATTAATATGAATAGTCAAATGTTGAACTAAAAGATAACAGCGTCAAATATTAAAAAAAAATGAAGATGCATAGTAGATTGGATGTCCAACTTCTTTTCTTCGTTCGATTCCTTAATTTGTTGGAGAACTTTCAACCATTTAGGATTAATGAAAGACTGTTTAGGATTTTAACTACGCAGGATTAATATATATGGAGGATAATAAGAGGGTCTCCAATTAATTAGTATGAAAAACTACCCAAACCCATGAATCCGTACATGCTACGTTTTCGTCCTATCTTACGATAAAGATAGAACCCACTAAATCCTAAAGTTCAATATGCAAATATATCATATTATCATCTTCTAACAATTATTATATCTTAAATATCATACAAGCATGCTATATTATCTATAATTTTATTCTATAATTTATTAAATTTTAGAGCTTTAAAATGCAAGCATGTTAAACCACCATCCTACATAATTTATATAATATTTTAATATATCATCTCTCCATCATTTATTATAATATCCTATATACATATATATTTTATCCTCACATAATTAGTATTATTTCTCTCTTCTATAATTAAGCCATATCACACAATTATTTCTAGCTCTTAGATGATTAATTTATGGTCCAAATTATCCTGCTCTTTTTCTTCTCACTATACCACCTTAATTATTTTTAACCCTTAAATGACTAACCTATTGTCCAAATTATTCCCCTTCTTTTCTTCTCTCTTAAAACCCCATCACTTTATTTTTACATTTAAATCATCATTCTATGTGCTATTTAAATCATCATAAACCACATCAACTTATGTAAACTTATATTATCTAGCTATCTTACATATTATTTTTATCTATTGTTATTATACTAAACTCCCGTAGCAATGCGCGGGGTTTCACATAGTGGATTGAACAACTAATACCGTCTCATTATTTACTAATACAGATTTTTAGAGTATTACCCGCTCTTTAAAATATTACAATTTAGATTCTAAACTAAGCACATCACTATATGTTATTTTTCGAATTTTTGAAATGACTAAATTATAAAAAGAACTAGTCGAGAATTTAGGTCAGGTACATCTCAATATTTGTATTTCTTGATAGTTAAATTTATTAGTAGTTCCGAATTTTCAAATCAATAAAATAAAATAATATATTGAGACAATAAGCCTAACACAATGCAACTTGATATTTTCAATACACAATTGTTATTGTATATAGAAAAAATATATGGATCTTGCACTATATCCTTTGTTGAGTTCATTATATATTGTTGTGATGAACGCTGCAG PhaseCut89: +Start +End FragmentLength FragmentNumber 1457 1505 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTCATATTGATGTTAATGAATCT 1457 + 5.53 3.1 8.96 3.05 9.43 0 0 0 13.95 0.66 14.26 CTAGACATATATATCTATCTAGAT 1479 - 0 0 0.22 0 0 0 0 0 0 0 0 AGACATATATATCTATCTAGATTC 1481 + 0.2 0 0 0 0.25 0 0 0 0.37 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G36140 8410 LOC_OS02G36140.4-2 osa-miR446 1446 1469 >LOC_OS02G36140.5-2 GTAAGACTAATTGCAGAAATTTTGATGGAAGATCTGTTAAATTTTTGTCCACTAGAGACGTAGTTAATTTGAGATGGGATGAGTAAAAAGTTAACTTATTTTGTGACTTCCATACCACTTACATCCTATATACATTATAATTAATTACATGCTAATCTCTACTATTATAAAAATTAAAGATGTTTTTGCCAGTATTTTGGTACATCATCTGTGTATGAGTCAGTTTTTAAGTTCAATTACTTTTGAAAATACATATCTATATTTGAGTTGGTTTTTAAGATCGTTCACTTTTGGTAATCATATAAGAAATCTGTTTAAAAAAACTCGCATGCTAACCTGAGACGATCGGACTCCTAACTGCAGCTCAGGATTTTCTAAAAATATATATATCCAACCGAACCCCCACAGTGAATTTCATCTTAACTAAACCATATAACAACAATAAGATTAAAATAGACTTCACCCGTTGCAATACAATGGCATTTTTTCTAGTCCTATAATAATTATAATATAATTATACTATAATTATATTTGACAGATTTTGTAAGGTTTTCTGTTGAATGATGGATATGTAGTCCCTTATTTTTTAAGTTAGGGTGACAATACTATAGTTTAATTTGGTGGGGTCTCAAATTTTTAAATTTGGAAACCATTGTAAGGAAAAGTATTGATTCAAAACATAAGCGCAAGTATTGATCCCTTGCTATTTGTTTGCTTAGCATGCATGACAGGGACAGTCTTGTAGGCGCCATGGTCCATGGAAGTTTTGCACCTTGCATGACTTGTTCTGGACACGTACGCATGCATATCAAAGACTGGTATAACAGTGTTCTAAAAAAAGACTGGTGTAACAGGACTAATTAGCATGAGTCTTCTTTGACACCGACTTGTGTTTGTCTTATATACAATATTAGATACGCATATATTTCCTCCGTTTAACATTTGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATTAATATGAATATATGAAATGCTTGAATGACTTACATTGTGAAACGGAGGAAGTATATCGCAATCAACGAGGTACACGCAGTAAATATTATGACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACACAGGTGATTTTTTTTAATGTTTGATAATATTTAGTGCAAATATGTAAAAGTATATGTTAAGGTTAGAGTTAATTTCATGGATGATAAAAGAAATCATAACAAAATAAACTATATAATTTTTTGAATAATTAATATGAATAGTCAAATGTTGAACTAAAAGATAACAGCGTCAAATATTAAAAAAAAATGAAGATGCATAGTAGATTGGATGTCCAACTTCTTTTCTTCGTTCGATTCCTTAATTTGTTGGAGAACTTTCAACCATTTAGGATTAATGAAAGACTGTTTAGGATTTTAACTACGCAGGATTAATATATATGGAGGATAATAAGAGGGTCTCCAATTAATTAGTATGAAAAACTACCCAAACCCATGAATCCGTACATGCTACGTTTTCGTCCTATCTTACGATAAAGATAGAACCCACTAAATCCTAAAGTTCAATATGCAAATATATCATATTATCATCTTCTAACAATTATTATATCTTAAATATCATACAAGCATGCTATATTATCTATAATTTTATTCTATAATTTATTAAATTTTAGAGCTTTAAAATGCAAGCATGTTAAACCACCATCCTACATAATTTATATAATATTTTAATATATCATCTCTCCATCATTTATTATAATATCCTATATACATATATATTTTATCCTCACATAATTAGTATTATTTCTCTCTTCTATAATTAAGCCATATCACACAATTATTTCTAGCTCTTAGATGATTAATTTATGGTCCAAATTATCCTGCTCTTTTTCTTCTCACTATACCACCTTAATTATTTTTAACCCTTAAATGACTAACCTATTGTCCAAATTATTCCCCTTCTTTTCTTCTCTCTTAAAACCCCATCACTTTATTTTTACATTTAAATCATCATTCTATGTGCTATTTAAATCATCATAAACCACATCAACTTATGTAAACTTATATTATCTAGCTATCTTACATATTATTTTTATCTATTGTTATTATACTAAACTCCCGTAGCAATGCGCGGGGTTTCACATAGTGGATTGAACAACTAATACCGTCTCATTATTTACTAATACAGATTTTTAGAGTATTACCCGCTCTTTAAAATATTACAATTTAGATTCTAAACTAAGCACATCACTATATGTTATTTTTCGAATTTTTGAAATGACTAAATTATAAAAAGAACTAGTCGAGAATTTAGGTCAGGTACATCTCAATATTTGTATTTCTTGATAGTTAAATTTATTAGTAGTTCCGAATTTTCAAATCAATAAAATAAAATAATATATTGAGACAATAAGCCTAACACAATGCAACTTGATATTTTCAATACACAATTGTTATTGTATATAGAAAAAATATATGGATCTTGCACTATATCCTTTGTTGAGTTCATTATATATTGTTGTGATGAACGCTGCAG PhaseCut89: +Start +End FragmentLength FragmentNumber 1457 1505 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTCATATTGATGTTAATGAATCT 1457 + 5.53 3.1 8.96 3.05 9.43 0 0 0 13.95 0.66 14.26 CTAGACATATATATCTATCTAGAT 1479 - 0 0 0.22 0 0 0 0 0 0 0 0 AGACATATATATCTATCTAGATTC 1481 + 0.2 0 0 0 0.25 0 0 0 0.37 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G36140 8410 LOC_OS02G36140.5-2 osa-miR446 1446 1469 >LOC_OS02G42020.1-1 GTGCGCCTCCTCTCGATCTGCACGTACGCAAGCTAAGGGGGATCTTGATTTGGTTTTGGTAGGATCGGATCGGCACCGTGGTCGCGGGGTTATTAGTTTCCTCTTCTTGGTTAATTGGGGGTGACGACCTTAGGTCCGGGCGTCGCGTCGTCGCGTCGGGGTGGTGCTTCGCACGTATGCGCGCCCGGGGCCGGGGCCGCCGTCTTTCGTGCAATCATCGTTGCTTGATTCGATCTTTTCGTGTGGCTTTCTGTTCAAGTCTTTGTCTAGTGCTTGTCTACTGGAGTAGTGTGTGAGGACAGATTATAACTAGCTAGCTTAGCCCCTTTTTGTGTTCCTCTTCTTGATGCCTTTGGTTCCAAGCACTAGCGAAGTAGGAGTAAGTTCATATCGCTTCTTCTTCATGTGCTCTGTTATCGCAGAGTCGATGTACGGATTGGCTGTTACGATTACGAAGCAGGGCTTGCTGCCTTGATTCGGTGTTGTGGTCGTAGGGATCAGTCGTCCTTGCAGTTGCAGAACACTGGTCTTGTTTCTTGCAAATTGCTTCCTTGATTTGGTTCAAGTTTGAACTGTGAGTATGAGCTTCGAGATATATTGCCTCCTTTTGCTTGATAACCTCTCTGTTCTTTTTATTTCTCTTGATATCAAGCCAGCATCTTTTATAGGTCTCTAATCCGCTTTCATGTTGAGAACTTGAGATGTTTGTAGGATGAATATATCTTTGCATATATGAGCATGTTCTTTCTTGTTAACTCAATTCATCAAGACATCAACTAATTAACCATGTTTTCTTAGATGATCTTTTCTAGGATTCAGATACTTGTCTTGAGCTGAATAACTGTACTCTTGCTGTTTTGTAGTCATGTCTTCTATTGCTAACATGACTACAATGATTCCATGTGGTGCGCTGGTGTTTCTAATGGTGCTAAACTGCTAATGATAGTTTTATTTAAGTTCTGAAGTAATGAAGCATAAAATCTTACGAACATATATTTCTGAGTTTCTTTTTGTTAATCTTGATATGCATTTTTTATGAGTGATCAAAGAAAGAGTTTCTCCCTTTATGGTAAATTGTTTTCTAGCACGAAGCTTCCATTTCAAAATTTAAACCGTACTAGCCCTGTTCCTTTCTCATTCTGGATTTTGGATTTCCGTTTGTACACTTCCCAAGCTCCTAAACGGCACACCTTGTTTAATTTTCTATATAAAATTTTCTTACTCCCTCCGTTTCACAATATAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATTTAGATTCATTATAAACAATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAACGGAGGAAGTAGAATATTTTTCTCAAGCAACTTTTCAACTTTGTAGTAGTCAATCCATTCATTTATACCCTCAAATAACTATCACAAAAATAGATTGTCCATTCATTTGATACTTGGATGGTACTCTTCAGGCTAGTAAACCAGCAATGTGATATGGTTCTTTTTGAAAATTTAATATATGAAAGATCTTTTTATTGGAGTCAGTTTCAATGTTTTTTGAGATCGTATCAGTTTCAATGATTACTAATACTACCAATGTTGTGGACTCCTCTAAATACTTTAGTTTCGTGTAGGAGCAATGGCACTAATATCACTCCTTTCATGTCTTTTGCAG PhaseCut96: +Start +End FragmentLength FragmentNumber 2063 2111 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 2063 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATCTATTTAGATTCAT 2085 - 2.96 0 2.19 0.61 4.22 0 0 0 1.47 0.33 3.27 ATATATATCTATTTAGATTCATTA 2087 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.1-1 osa-miR446 2048 2071 >LOC_OS02G42020.1-3 GTCAGTATCTGATTCATTTTATCTATGTTGCAGTATATAAATAATGTTTTTCCTTCAGATCCACAAAATAAATATAGATTCTTGTTTAAACGTGAAATCTGAAAATTTAAAATTTGTTCAAGATGTTAATCCAATAAGAGAAACCTTTTCTTATATAAAGGAATATGTGGTCTGCCTCAGCTTATGGATTGGGACTAACAGTTGTTTATATCTTGTGTCTTGTCAAGATGATATCACTATAATTCCACTAAACCACTGCCGCGTATGCAAAAGTAGATCATGTGCTAGATGCACTTATTTGTCCGCATCTATATAAATACTATAATGGTCTATTATAGAACATAAAGTTAGTGTGGTCTGAGTTGGTCCTCCCAAGTTTCTTTTGAGCTGTTTGTCTCACAGGTGTGCCTTTGTATTTGTCTAGTGTGTACTAGAATAATATAAGTTGGTCCAGGAACAACAAGGTCTCTGCTTTTGACAGTGCTAGCAATACTGCCTCTACTAATATTTCTTAAAAACATTGCAGTCAAAAGCTGGCATTGTCTTGTTTCACAATAATTTGTTCATCTTTTGGAAGTGTTATAACTTTTTGATTTAAATATATTTGTTCAATTGAGACAACTGAGCTGGTATCACTGAGTAGGCTGGTAGATTATGCAACCATGCTAAACTTGTCATATCTTCTTTTTTATCATGGAACAGTCGGGATATCATTTAACATTTTCTCTTGTGGTGATCTAGCAGAACATAGGGTTTTACCTTGAGTAATTCTTGTATCTAATACTAATGTCCCCTAAAAAAAGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTAACCGTTCGTCTTATTCAAAAAAATTTGTGAAATATGTAAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAATATTTTGAAACAGAGGGAGTATATACCAATGTCTAATAAATGTTTGTGTGATAGCAAATGTGGTTCTCCCTTTTCATTTTTAATGGTACTAACAACCATATTTTTGTACAG PhaseCut98: +Start +End FragmentLength FragmentNumber 4405 4474 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 4403 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TAACCGTTCGTCTTATTCAAAAA 4426 - 0 0 0 0 0 0 0 0 0 0 0 TTTGTGAAATATGTAAAACTATA 4451 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.1-3 osa-miR2123c 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.1-3 osa-miR2123b 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.1-3 osa-miR2123a 4395 4416 >LOC_OS02G42020.2-1 GTGAGTATGAGCTTCGAGATATATTGCCTCCTTTTGCTTGATAACCTCTCTGTTCTTTTTATTTCTCTTGATATCAAGCCAGCATCTTTTATAGGTCTCTAATCCGCTTTCATGTTGAGAACTTGAGATGTTTGTAGGATGAATATATCTTTGCATATATGAGCATGTTCTTTCTTGTTAACTCAATTCATCAAGACATCAACTAATTAACCATGTTTTCTTAGATGATCTTTTCTAGGATTCAGATACTTGTCTTGAGCTGAATAACTGTACTCTTGCTGTTTTGTAGTCATGTCTTCTATTGCTAACATGACTACAATGATTCCATGTGGTGCGCTGGTGTTTCTAATGGTGCTAAACTGCTAATGATAGTTTTATTTAAGTTCTGAAGTAATGAAGCATAAAATCTTACGAACATATATTTCTGAGTTTCTTTTTGTTAATCTTGATATGCATTTTTTATGAGTGATCAAAGAAAGAGTTTCTCCCTTTATGGTAAATTGTTTTCTAGCACGAAGCTTCCATTTCAAAATTTAAACCGTACTAGCCCTGTTCCTTTCTCATTCTGGATTTTGGATTTCCGTTTGTACACTTCCCAAGCTCCTAAACGGCACACCTTGTTTAATTTTCTATATAAAATTTTCTTACTCCCTCCGTTTCACAATATAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATTTAGATTCATTATAAACAATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAACGGAGGAAGTAGAATATTTTTCTCAAGCAACTTTTCAACTTTGTAGTAGTCAATCCATTCATTTATACCCTCAAATAACTATCACAAAAATAGATTGTCCATTCATTTGATACTTGGATGGTACTCTTCAGGCTAGTAAACCAGCAATGTGATATGGTTCTTTTTGAAAATTTAATATATGAAAGATCTTTTTATTGGAGTCAGTTTCAATGTTTTTTGAGATCGTATCAGTTTCAATGATTACTAATACTACCAATGTTGTGGACTCCTCTAAATACTTTAGTTTCGTGTAGGAGCAATGGCACTAATATCACTCCTTTCATGTCTTTTGCAG PhaseCut96: +Start +End FragmentLength FragmentNumber 2063 2111 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 2063 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATCTATTTAGATTCAT 2085 - 2.96 0 2.19 0.61 4.22 0 0 0 1.47 0.33 3.27 ATATATATCTATTTAGATTCATTA 2087 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.2-1 osa-miR446 2048 2071 >LOC_OS02G42020.2-3 GTCAGTATCTGATTCATTTTATCTATGTTGCAGTATATAAATAATGTTTTTCCTTCAGATCCACAAAATAAATATAGATTCTTGTTTAAACGTGAAATCTGAAAATTTAAAATTTGTTCAAGATGTTAATCCAATAAGAGAAACCTTTTCTTATATAAAGGAATATGTGGTCTGCCTCAGCTTATGGATTGGGACTAACAGTTGTTTATATCTTGTGTCTTGTCAAGATGATATCACTATAATTCCACTAAACCACTGCCGCGTATGCAAAAGTAGATCATGTGCTAGATGCACTTATTTGTCCGCATCTATATAAATACTATAATGGTCTATTATAGAACATAAAGTTAGTGTGGTCTGAGTTGGTCCTCCCAAGTTTCTTTTGAGCTGTTTGTCTCACAGGTGTGCCTTTGTATTTGTCTAGTGTGTACTAGAATAATATAAGTTGGTCCAGGAACAACAAGGTCTCTGCTTTTGACAGTGCTAGCAATACTGCCTCTACTAATATTTCTTAAAAACATTGCAGTCAAAAGCTGGCATTGTCTTGTTTCACAATAATTTGTTCATCTTTTGGAAGTGTTATAACTTTTTGATTTAAATATATTTGTTCAATTGAGACAACTGAGCTGGTATCACTGAGTAGGCTGGTAGATTATGCAACCATGCTAAACTTGTCATATCTTCTTTTTTATCATGGAACAGTCGGGATATCATTTAACATTTTCTCTTGTGGTGATCTAGCAGAACATAGGGTTTTACCTTGAGTAATTCTTGTATCTAATACTAATGTCCCCTAAAAAAAGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTAACCGTTCGTCTTATTCAAAAAAATTTGTGAAATATGTAAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAATATTTTGAAACAGAGGGAGTATATACCAATGTCTAATAAATGTTTGTGTGATAGCAAATGTGGTTCTCCCTTTTCATTTTTAATGGTACTAACAACCATATTTTTGTACAG PhaseCut98: +Start +End FragmentLength FragmentNumber 4405 4474 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 4403 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TAACCGTTCGTCTTATTCAAAAA 4426 - 0 0 0 0 0 0 0 0 0 0 0 TTTGTGAAATATGTAAAACTATA 4451 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.2-3 osa-miR2123c 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.2-3 osa-miR2123b 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.2-3 osa-miR2123a 4395 4416 >LOC_OS02G42020.3-1 GTGCGCCTCCTCTCGATCTGCACGTACGCAAGCTAAGGGGGATCTTGATTTGGTTTTGGTAGGATCGGATCGGCACCGTGGTCGCGGGGTTATTAGTTTCCTCTTCTTGGTTAATTGGGGGTGACGACCTTAGGTCCGGGCGTCGCGTCGTCGCGTCGGGGTGGTGCTTCGCACGTATGCGCGCCCGGGGCCGGGGCCGCCGTCTTTCGTGCAATCATCGTTGCTTGATTCGATCTTTTCGTGTGGCTTTCTGTTCAAGTCTTTGTCTAGTGCTTGTCTACTGGAGTAGTGTGTGAGGACAGATTATAACTAGCTAGCTTAGCCCCTTTTTGTGTTCCTCTTCTTGATGCCTTTGGTTCCAAGCACTAGCGAAGTAGGAGTAAGTTCATATCGCTTCTTCTTCATGTGCTCTGTTATCGCAGAGTCGATGTACGGATTGGCTGTTACGATTACGAAGCAGGGCTTGCTGCCTTGATTCGGTGTTGTGGTCGTAGGGATCAGTCGTCCTTGCAGTTGCAGAACACTGGTCTTGTTTCTTGCAAATTGCTTCCTTGATTTGGTTCAAGTTTGAACTGTGAGTATGAGCTTCGAGATATATTGCCTCCTTTTGCTTGATAACCTCTCTGTTCTTTTTATTTCTCTTGATATCAAGCCAGCATCTTTTATAGGTCTCTAATCCGCTTTCATGTTGAGAACTTGAGATGTTTGTAGGATGAATATATCTTTGCATATATGAGCATGTTCTTTCTTGTTAACTCAATTCATCAAGACATCAACTAATTAACCATGTTTTCTTAGATGATCTTTTCTAGGATTCAGATACTTGTCTTGAGCTGAATAACTGTACTCTTGCTGTTTTGTAGTCATGTCTTCTATTGCTAACATGACTACAATGATTCCATGTGGTGCGCTGGTGTTTCTAATGGTGCTAAACTGCTAATGATAGTTTTATTTAAGTTCTGAAGTAATGAAGCATAAAATCTTACGAACATATATTTCTGAGTTTCTTTTTGTTAATCTTGATATGCATTTTTTATGAGTGATCAAAGAAAGAGTTTCTCCCTTTATGGTAAATTGTTTTCTAGCACGAAGCTTCCATTTCAAAATTTAAACCGTACTAGCCCTGTTCCTTTCTCATTCTGGATTTTGGATTTCCGTTTGTACACTTCCCAAGCTCCTAAACGGCACACCTTGTTTAATTTTCTATATAAAATTTTCTTACTCCCTCCGTTTCACAATATAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATTTAGATTCATTATAAACAATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAACGGAGGAAGTAGAATATTTTTCTCAAGCAACTTTTCAACTTTGTAGTAGTCAATCCATTCATTTATACCCTCAAATAACTATCACAAAAATAGATTGTCCATTCATTTGATACTTGGATGGTACTCTTCAGGCTAGTAAACCAGCAATGTGATATGGTTCTTTTTGAAAATTTAATATATGAAAGATCTTTTTATTGGAGTCAGTTTCAATGTTTTTTGAGATCGTATCAGTTTCAATGATTACTAATACTACCAATGTTGTGGACTCCTCTAAATACTTTAGTTTCGTGTAGGAGCAATGGCACTAATATCACTCCTTTCATGTCTTTTGCAG PhaseCut96: +Start +End FragmentLength FragmentNumber 2063 2111 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 2063 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATCTATTTAGATTCAT 2085 - 2.96 0 2.19 0.61 4.22 0 0 0 1.47 0.33 3.27 ATATATATCTATTTAGATTCATTA 2087 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.3-1 osa-miR446 2048 2071 >LOC_OS02G42020.3-3 GTCAGTATCTGATTCATTTTATCTATGTTGCAGTATATAAATAATGTTTTTCCTTCAGATCCACAAAATAAATATAGATTCTTGTTTAAACGTGAAATCTGAAAATTTAAAATTTGTTCAAGATGTTAATCCAATAAGAGAAACCTTTTCTTATATAAAGGAATATGTGGTCTGCCTCAGCTTATGGATTGGGACTAACAGTTGTTTATATCTTGTGTCTTGTCAAGATGATATCACTATAATTCCACTAAACCACTGCCGCGTATGCAAAAGTAGATCATGTGCTAGATGCACTTATTTGTCCGCATCTATATAAATACTATAATGGTCTATTATAGAACATAAAGTTAGTGTGGTCTGAGTTGGTCCTCCCAAGTTTCTTTTGAGCTGTTTGTCTCACAGGTGTGCCTTTGTATTTGTCTAGTGTGTACTAGAATAATATAAGTTGGTCCAGGAACAACAAGGTCTCTGCTTTTGACAGTGCTAGCAATACTGCCTCTACTAATATTTCTTAAAAACATTGCAGTCAAAAGCTGGCATTGTCTTGTTTCACAATAATTTGTTCATCTTTTGGAAGTGTTATAACTTTTTGATTTAAATATATTTGTTCAATTGAGACAACTGAGCTGGTATCACTGAGTAGGCTGGTAGATTATGCAACCATGCTAAACTTGTCATATCTTCTTTTTTATCATGGAACAGTCGGGATATCATTTAACATTTTCTCTTGTGGTGATCTAGCAGAACATAGGGTTTTACCTTGAGTAATTCTTGTATCTAATACTAATGTCCCCTAAAAAAAGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTAACCGTTCGTCTTATTCAAAAAAATTTGTGAAATATGTAAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAATATTTTGAAACAGAGGGAGTATATACCAATGTCTAATAAATGTTTGTGTGATAGCAAATGTGGTTCTCCCTTTTCATTTTTAATGGTACTAACAACCATATTTTTGTACAG PhaseCut98: +Start +End FragmentLength FragmentNumber 4405 4474 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 4403 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TAACCGTTCGTCTTATTCAAAAA 4426 - 0 0 0 0 0 0 0 0 0 0 0 TTTGTGAAATATGTAAAACTATA 4451 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G42020 14076 LOC_OS02G42020.3-3 osa-miR2123c 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.3-3 osa-miR2123b 4395 4416 LOC_OS02G42020 14076 LOC_OS02G42020.3-3 osa-miR2123a 4395 4416 >LOC_OS02G43600.1-1 GTGAGCATTTCCTTGCGTAATCTTCTTATAAACTGCTCATGACATTGGGTTATCGGTGGTGGAGCAATGCAGGTGAGAAAAACATCAGCTAACCATATTTTTATTAGGGGAGAATGCAACAATTTATCTATGACTATATGAGTAGCATTTCTTTTGTTTGCAGAACATAAATTCTCTGTTCTGTTGAGTTGTTGACAGTGCAGGTGCTGAAATAGCAACTCATTGTGTGTAACACTTATGGCAGAATTAGTTAGTTACTACATAGTCTGCTACTCAATAAATGGAAAGTATCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATAAATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGATGAAGTAGTTAGTAAACTGAATTGGGGATTGATTTTTCTCGTAAATGGAAAGGGTAACCTATTTAGTAAACGGAATTGGGGATTGATTTTTCTCAACATGGGTTCACTTCAGTTTGGTGGCAGATAAGTCAGTAGAGGCCTCTGGGAGCCACCATTCTTTTGTGACTCCCTTTTAATTCTTTGTTGTTCTTGTATGCTCTCATGAGCGTGTCTCGATTGGATTTGGTGGTTTCTTGAGATTCTGTGCAATCACTATTTGTCCCGTAACAAGAATTTCATTTTTTTTCACAGCTACATCCATGGCAATTTTGGACTTGTTTACATGTGACACGATTTTACTTGAATTGTTTTGTGCTGTAG PhaseCut51: +Start +End FragmentLength FragmentNumber 759 831 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 757 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTTCCACATTCATATTGA 781 - 0.2 0.22 0.22 0 0.5 0 0 0 0 0.66 0 TTAATGAATCTAGACATATATAAA 807 + 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43600 2942 LOC_OS02G43600.1-1 osa-miR1436 751 771 PhaseCut53: +Start +End FragmentLength FragmentNumber 759 822 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 757 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCACATTCA 778 - 1.18 0.89 0.66 1.63 0 0 0 9.25 0 0 0 TTGATGTTAATGAATCTAGAC 801 + 1.97 0 0 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43600 2942 LOC_OS02G43600.1-1 osa-miR1436 751 771 PhaseCut59: +Start +End FragmentLength FragmentNumber 761 881 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATTCTA 759 - 0.79 0 0.66 0 1.24 0 0 0 0 1.81 0 GCATTTTCCACATTCATATTGATG 783 - 0 0 0 0 0.5 0 0 0 0 0.33 0 ATTTTCCACATTCATATTGATGTT 785 + 0 0 0 0.2 0.74 0 0 0 1.47 0.16 0.7 AATGAATCTAGACATATATAAATT 809 + 0 0 0 0 0 0 0 0 0 0 0.23 TTCATTAACATCAATATGAATGTG 831 - 10.47 2.21 5.24 4.07 3.72 0 0 0 0 3.45 0 CATTAACATCAATATGAATGTGGG 833 + 46.21 44.72 31.68 10.59 12.66 0 0 0 0 22.53 2.1 AAATGCTAGAATGACTTACATTGT 857 + 15.01 5.53 12.02 1.43 62.79 0 0 0 51.4 2.96 18 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43600 2942 LOC_OS02G43600.1-1 osa-miR1436 751 771 PhaseCut71: +Start +End FragmentLength FragmentNumber 761 881 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCTAGC 761 + 0.39 0 0 0 0 0 0 0 0 0.16 0 GCATTTTCCACATTCATATTGATG 783 - 0 0 0 0 0.5 0 0 0 0 0.33 0 ATTTTCCACATTCATATTGATGTT 785 + 0 0 0 0.2 0.74 0 0 0 1.47 0.16 0.7 AATGAATCTAGACATATATAAATT 809 + 0 0 0 0 0 0 0 0 0 0 0.23 TTCATTAACATCAATATGAATGTG 831 - 10.47 2.21 5.24 4.07 3.72 0 0 0 0 3.45 0 CATTAACATCAATATGAATGTGGG 833 + 46.21 44.72 31.68 10.59 12.66 0 0 0 0 22.53 2.1 AAATGCTAGAATGACTTACATTGT 857 + 15.01 5.53 12.02 1.43 62.79 0 0 0 51.4 2.96 18 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43600 2942 LOC_OS02G43600.1-1 osa-miR1436 751 771 >LOC_OS02G43760.1-3 GTACGGCTGTACCCATCTGTTTTGTTTTTGCCGCATAGCGCATCCAATGTGCTCGATAGTCTTGCCTCGGTTTGATACATTGTGGTGTACATGCACTGAACTACAAATTGTGCATCGGATTTGTTACGGAATTGTCCTCGGTTTGAGCAATTGAGTTAGACTGTTTTGTGGATTGGATTTGTTATTCCAGTTAAAGTTACTGCACGGGATCAGGATTCAGATAGGTCTTTCACAGTTTGATTGGTGTTTGGCCTTCTTTTTTATGCATACATTTTATTACTCTGTAAAATTAATGTTGTGTAGTGATATATTGGTTTCGGTGACCTCTGTTTGTAAAGTTTTAAGTAGTTGTTCTCTTTTACTGAATGTTGTGTATGAATTTGTATGCTTGTTTGATTTGTGATATTTCACTCTATCCACACAGGATTGCACTATTACTGTACTGGAAATTTTGCTAGTTGAATCTACTATTGTAGAATTTGCTGAACTAGATGTGTTAGTTCTGAGGTACCCAGGACATTGAACCTCAGTATTACTATATCATGAAATGCAAGAGTGCCTTCTTCTCTCAGTACCATCAAGTGAACTCCAGAGATGGCTGTTTTTGAATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATATGGGAAATGTTAGAATGACTTACATTGTGAAACGGAGGAAGTACCAAGATACCTCACCTTTTATCATGGTTGTGAAATTTCTTTTACATTATAGGTTGCATCAATGTGCTTTTAGCCTTTTACTAACAATACAGAACACCTGGGTGTGTGGCTACTCTCTGCAGTAAACATGGTCCTCTCCTCCTTTCTATTTTTGTAATGGATTTGCTGTAGTATTGATTCTCTTGCAGTACTTATAGATACAACTACTGTGCTATGTAAAAAAAATGAGGATGCATGCAAATGGTCAATGGACTTAACTATCCTTTGTAACTTGGAATTTGTAAACATGATATGCTACACTGTATCACTTAAATCTGTGTGCCCAATCAATTTTAGATCAATTGCCTAATTTATGTTTCTTTTTGAACTATAAATCAATTGTCAATTGACATGCTGCTATGGATGTACTGCAGTTCCAATTCTCATGTTATATCTTGATGTGGAAGTTCAATCCTCATGCAAGTGATTCTACAACTACTGCATCTTAATTTGTACAGTATGACTCTACAACTACTGCAGATGACCTGATGTAGAGTCACTTCACCATAGTCATGAGTCAAGTTAGATGTTCCACAACTGGTTAAGATGCTGTTTTATTTGCAGAAAAAGCATTTTGTCACATATACAAGATGTGGCAGAATTTATAGTAAAACTGTGATGATTGTATAGATTGTCTGATGGCCTGATTGTTGTGCATGTTCCTTGTCCTGACCATTATTTTTCTTAGGGAGTGCATAAAAAATTGCACTCACTGTGAAACTATGGTTCAGCTTTCATTTTACTAGGAGACTTTTATGGTATGTACTGCATTCAGTTTTTGGTTCATTAATATTGTTCCATATTCATATTCTAATTGAGAAATACTAGCCTGCTTTCCCTTTTTTAGGGTGTTGGTTTCTGTTTCCTTCATCTGGCATATTAAATGGGTTGAGTGTTGACGTATATGATATGTTGGATATCTACTTTCACTCAATGCACGATGCCAATTTGAAGTTTACCAGTTTGAAATGTGCACATTTTAAATTATTTATTACTTGGAACTTTATATACCCTTCATTTTCTTAACCCAATACCTTGATATGCAG PhaseCut51: +Start +End FragmentLength FragmentNumber 1211 1259 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1209 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1233 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1235 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 PhaseCut56: +Start +End FragmentLength FragmentNumber 1212 1356 24 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1210 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1234 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1236 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1258 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1260 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1282 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 GAATATGGGAAATGTTAGAATGAC 1308 + 6.71 2.88 3.71 0.41 2.23 0 0 0 0 11.51 0.7 TTACATTGTGAAACGGAGGAAGTA 1332 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 PhaseCut74: +Start +End FragmentLength FragmentNumber 1214 1352 23 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGC 1214 + 0 0 0.22 0 0 0 0 0 0 0 0 GCATTTCCCACATTCATATTGAT 1235 - 2.57 0.66 2.19 3.26 2.23 0 0 0 1.47 4.77 1.64 GTTAATGAATCTAGACATATATA 1258 - 0 0 0 0 0 0 0 0 0 0 0 TCTATCTAGATTCATTAACATCA 1281 - 0.2 0 0.44 0 0 0 0 0 0 0 0 TATCTAGATTCATTAACATCAAT 1283 + 0 0 0.22 0 0.25 0 0 0 0 0 0 ATGAATATGGGAAATGTTAGAAT 1306 + 1.38 0.66 0.44 0.2 0.25 0 0 0 1.1 0.16 1.17 GACTTACATTGTGAAACGGAGGA 1329 + 2.57 1.11 1.31 0 1.24 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 PhaseCut80: +Start +End FragmentLength FragmentNumber 1217 1343 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1215 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1236 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1238 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1257 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 1278 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 TCAATATGAATATGGGAAATG 1301 + 2.17 0.44 0 2.44 4.72 0 0 5.65 0 0.16 0 TGTTAGAATGACTTACATTGT 1320 - 0.59 0 0 1.02 0.25 0 0 0 0 0 0 TTAGAATGACTTACATTGTGA 1322 + 0.79 1.33 0.22 1.43 1.24 2.9 104.01 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 PhaseCut81: +Start +End FragmentLength FragmentNumber 1215 1348 19 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCT 1215 + 0.59 0 0.22 0 0.74 0 0 0 0 0 0 CTAGCATTTCCCACATTCA 1232 - 0 0 0 0 0 0 0 0 0.37 0 0 TTGATGTTAATGAATCTAG 1253 + 0 0 0 0.41 0 0 0 0 0 0 0 AGACATATATATCTATCTA 1270 - 0.2 0 0.22 0.2 0 0 0 0 0 0 0 GATTCATTAACATCAATAT 1289 - 0.79 0 0.22 1.22 0 0 0 0 0 0 0 TTCATTAACATCAATATGA 1291 + 0.59 0.44 0 0.81 0.99 0 0 0 0 0 0 ATATGGGAAATGTTAGAAT 1310 + 0 0 0 0 0 0 0 0 0 0 0 ATGACTTACATTGTGAAAC 1327 - 0.39 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 LOC_OS02G43760 4657 LOC_OS02G43760.1-3 osa-miR1436 1203 1223 >LOC_OS02G44300.1-6 GTTATTATCTTTAAGCATTGCTCGTTGGCAGAATATTCCTTAGAGCTTACTATTGAACTAGACATTAAAGATCATAAACACGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATAAATGTGAGAAATGCTAGATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTAGTTTGTTGATTTGTTCAGTATAGGAATTCTACTGTTCTAAACAACTAACACCCAGCATTTTAATTGCATTGCTAACATTCTTGATTGTTTCGTGGTTCTTTAG PhaseCut49: +Start +End FragmentLength FragmentNumber 1539 1587 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1537 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1561 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1563 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.1-6 osa-miR1436 1531 1551 PhaseCut54: +Start +End FragmentLength FragmentNumber 1540 1636 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1538 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1562 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1564 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1586 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1588 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1610 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.1-6 osa-miR1436 1531 1551 PhaseCut76: +Start +End FragmentLength FragmentNumber 1544 1640 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 1542 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 1566 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 1568 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATCTATCT 1592 + 0.39 0 0 0.41 1.74 0 0 0 0 0.33 0 CTAGATTCATTAACATCAATATAA 1614 - 0.2 0 0 0 0.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.1-6 osa-miR1436 1531 1551 PhaseCut77: +Start +End FragmentLength FragmentNumber 1545 1650 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1543 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1564 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1566 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1585 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 1606 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATAAATGTGAGAAA 1627 - 0.39 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.1-6 osa-miR1436 1531 1551 >LOC_OS02G44300.3-5 GTTATTATCTTTAAGCATTGCTCGTTGGCAGAATATTCCTTAGAGCTTACTATTGAACTAGACATTAAAGATCATAAACACGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATAAATGTGAGAAATGCTAGATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTAGTTTGTTGATTTGTTCAGTATAGGAATTCTACTGTTCTAAACAACTAACACCCAGCATTTTAATTGCATTGCTAACATTCTTGATTGTTTCGTGGTTCTTTAG PhaseCut49: +Start +End FragmentLength FragmentNumber 1539 1587 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1537 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1561 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1563 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.3-5 osa-miR1436 1531 1551 PhaseCut54: +Start +End FragmentLength FragmentNumber 1540 1636 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1538 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1562 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1564 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1586 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1588 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1610 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.3-5 osa-miR1436 1531 1551 PhaseCut76: +Start +End FragmentLength FragmentNumber 1544 1640 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 1542 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 1566 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 1568 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATCTATCT 1592 + 0.39 0 0 0.41 1.74 0 0 0 0 0.33 0 CTAGATTCATTAACATCAATATAA 1614 - 0.2 0 0 0 0.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.3-5 osa-miR1436 1531 1551 PhaseCut77: +Start +End FragmentLength FragmentNumber 1545 1650 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1543 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1564 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1566 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1585 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 1606 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATAAATGTGAGAAA 1627 - 0.39 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.3-5 osa-miR1436 1531 1551 >LOC_OS02G44300.4-6 GTTATTATCTTTAAGCATTGCTCGTTGGCAGAATATTCCTTAGAGCTTACTATTGAACTAGACATTAAAGATCATAAACACGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATAAATGTGAGAAATGCTAGATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTAGTTTGTTGATTTGTTCAGTATAGGAATTCTACTGTTCTAAACAACTAACACCCAGCATTTTAATTGCATTGCTAACATTCTTGATTGTTTCGTGGTTCTTTAGGGCGTCTCTTTGACCAAAGCTGTATTGAGTAAATATGTAGATGAAAACCAGAAGCTTCAACAAGAACTGGTATGGATTTTCTTTAGATAAGAATTTGGAGAAAATTGATACTTTCAATGTTTTAAAAAAGAACTGACCGTTTAATTCGCTTCAACTTCTCCATAATTGAATAATTGAGTGATTCGTATGAAATTATTTTTTCTTGCTACCTTTAATGAGGTTCATATCATGATATTTGTTACGAGACATTGCTCCCTTTCGATAGTTCTTTTTTACTTAACCTTTTTTGCATACAACATATCGTAAATTTACAACATCTGCGTGCAAAAGCACCAGATCCACCAAAAGAAAAGAGAAGCAAGACTAGGGCAGATCAATTACTTAACCCCAAGTTGATCTATTGCAG PhaseCut49: +Start +End FragmentLength FragmentNumber 1539 1587 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1537 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1561 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1563 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.4-6 osa-miR1436 1531 1551 PhaseCut56: +Start +End FragmentLength FragmentNumber 1540 1636 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1538 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1562 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1564 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1586 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1588 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1610 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.4-6 osa-miR1436 1531 1551 PhaseCut75: +Start +End FragmentLength FragmentNumber 1544 1640 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 1542 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 1566 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 1568 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATCTATCT 1592 + 0.39 0 0 0.41 1.74 0 0 0 0 0.33 0 CTAGATTCATTAACATCAATATAA 1614 - 0.2 0 0 0 0.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.4-6 osa-miR1436 1531 1551 PhaseCut79: +Start +End FragmentLength FragmentNumber 1545 1650 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1543 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1564 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1566 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1585 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 1606 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATAAATGTGAGAAA 1627 - 0.39 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G44300 2681 LOC_OS02G44300.4-6 osa-miR1436 1531 1551 >LOC_OS02G47480.1-5 GTAAGCTTGGTAACCTTGCAGTTATGCAATGAATAATGGAAAAACTAGCTAGGTAATATTTACCAGAAGTTTCAAAATTCCATTTCATTTTCTTTTTATAGCATCTCGGTCGTAAGCTTGGTTACCGATCAAAGGAAACCCTAGGTGAGGAACGTCCCTCTCGTAAGTCGTAAGGATGAGGTAATTGTAAGATTGTTTGTCAGCCTCAACTTTAGTGTACTAGCAGTCCGTAAGCTGTTTTGTCAGCTCATGACATGATGTTTTGTCGTGTCATCTGGTACGTTGACATTACAAGTTTCATCAGGAACGTAACAAAATTCAATGGGCTGCGTGGTCAAGATGGAAGGGTTAGGTCTCACGGAGCTAAGTCAGCTAGCATGAATATATCATTCATATAATTAAACTATGAGTTGACTATAGCATGAATTAATATAGCCCAAACTTTTCTAGGGGAGTTCTGAAATCTGAAGTATGATAGAGTTGACGAGTTCCCGTTTCTCTGTATGATTGCCGGGTGTATGCAATTAACGTGGCCTCTAAAATACAGCTTCCAACTATATGTATTTTGAAAAGAACTATGTATTTTATTCCACAGTAGTACTCTCTCTGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAAAATTTGTGAAATATGTAAAACTATATGTATACATGAAAGTATATTTATCAATGAATCAAATGATATGAAAAGAATAAATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACACATACTAAAAAGTCAATGGTGTTAAACATTTTGAAACGAAGGAAGTATAATACTATTGTTTACATACATATTGACACTTTAAAATATATTTAGGCCCCAGGAATACTGGCGCCGCTGGGAAGCCTCCATTGATACCTAATAATTTGCTTATATATTAGCCGTTCTCCTCTGCATATGCTACTTATTTATATATCCACGTTTGGTTTTTCAGCAAGCAAAGTCTACAAGAGGCACAACTCTATCTGCATAGTGTTACACATTATACAATTGTTCATTATTGTGGCTTCCCTGCTTCTGAAAGAAACTGGACCAGTCTTCATCAGTGTCTTCAGATCGATCTCATTGCCATTGAAAATTGATAATATGTGTACTATATTTTTTAGATGAAAAGCCCAGTACCGTCCTCATGCATGCATGCATGGACTCGATCCTTGGCTTGTGCTTGCTGTGCGACGATTTCCACTTGTTTTTTTTATGGCTAGTAGGTGCAGTTGTGGAGAATACGCAACCTACACGTAGTACCGTTTTTTTTTATTGGAGCATCCATCAGAGTCAAACTTAAATGCTTATTTGACCTGAATTTATTTTCGGCTTGAATTTTGTGTTTTATTAATGTGCTATATATAGGTCAACTGTACTTATGCAAACCTGATGGCATGAGCTGATGAGCCCCCTTTTTTCTTTCAAAACTTCTGAAGAAAATGACACGCGGAGCTATCTTCTGAACTTTTCAGTTGAAAAACTGAAGCTCGTTTTTCTGCAAAACTCCGAAACAATGATTTGTTATTTCATAACAATAG PhaseCut84: +Start +End FragmentLength FragmentNumber 4734 4803 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 4732 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TGACCGTTCGTCTTATTCAAAAA 4755 - 0.59 0.22 0.44 0 0.25 0 0 0 0 0 0 TTTGTGAAATATGTAAAACTATA 4780 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123c 4724 4745 LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123b 4724 4745 LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123a 4724 4745 LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123c 4724 4745 LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123b 4724 4745 LOC_OS02G47480 11852 LOC_OS02G47480.1-5 osa-miR2123a 4724 4745 >LOC_OS02G48290.1-1 GTTTGTGAATTGATGATTTTTCAGGTTACCTGTGATTAATTTTTTTCTGCACTTTCTTAGAGATCAGTCGCTTCATGGGTTGCTATTTGCTAGTGCGAATTGCAATAGAAATTGTTCAGGGCTTGAGTATGTAGTGAGCGAATGATGATGGTCAAAATTAGAACCTTTTTAAGCTATCATAGAGTTAACGTGTTTGAGTTTCTGAAATAAGTGCTTTCATTATGTATCTAGCATAGTTGATTAGATATACTAACTACCTTTTGGGCATGTTGAATGCGTGCTCTGTTTCCAAGCTAGGATTGGGTGTATTAGTCCTAAAAAAAGTTAGGTGTATTTGAGGCCGGTTAATGCTTCCAAAGTACCATGTAGGTTCATATGTTTGACTAATAAGTAGCTGGTAGTTAATCATGGAATTTGTTGAACTGGGATAAGTGACTTTCAAGCTATTCTGGGATTTTCATAGTTAAGGCATTCCAAATATTGTTAGGAATAAAAAAAAGTGCTACTTCCCATTTAGTATAGAAGAGTGCATTTCAATTTCTACACTACAAAGTACGGACTGTATTTTTGCAAAAAAATCAAAAACAGAAGTATGGTCAGTACATCACTCTGTCACTCCTGTGATGTGAGTTAACTTTGTTAAGCGTTTACATGCTAACTGATGTTGCAGCAAGTATTTTTACTAGAGTGCAAGTTACATTTTCATGTGGTTAGAGGGCACATGCAAAATTCTCCATGCTCAAACTTCAATAATTGGTCATGTTTCGCCATTCTCCCTTCTTGATCCTGTCAGAGATGGAGTTTGAACTTATTATTGCATAAAAGAATGAATTGGAATAAACAGAGACTGGGTTCACTTTCCCTGCGTGCTGTGAACATGTGTTCCGGATGGGCATAAACAAAGTAAACTAATATGTTACCAAGTATGGACTTGCTGAAATAAATTGACCTTTTTGATGGACAACATAGTGGAGGAATAAGCAGAGACTGGGTTCACTTTCCATGCATGCTCTGTAAACTTGAGTTCCGGATGGTCATAAACAAAGTACTCCCTCGATCCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATACTTTTATATATACATATAGTTTTACATATTTAACAAAAGTTTTTGAATAAGATGAACGGTCAAACATGTTGTAAAAAGTTAACGGCGTCAAACATTTAGGGAAGGAGGGAGTAATAATGTTACCAAGTATGGTCTTGGTCAGAAACAATCCAAATTGGCATTTTTGATGGACACAGTCATAGGAGACTGATTTTAATCCTGATGTCTGGTTGTTTAGCAAAAATTGGAATCAGGGAATAAGGCCAGTACTGCTGATGTAGAATGAAAGCAGTATGCCATTTCTATATACTTCAGAAAGAACTACCTTGTTACCTGTCGTGTGAAAGGAAAAAGCCTGATGATAAGATTTTCATCTCAGAAGCAGCATACAGAGTTTTTCCTTTGTGATTTTCATGTTGGTTGATACATGGTCAGTATGGTTAGTACATGATGAAGCCTTATTATTATTACTATTATTTTGTGCTAGCTTGTTTCAGGAGTTTGATCCAATAGACATGCACTTCAAAAAAAGAGAGAAATTGTCTATATGCATGACTCTGTCGACAAGATCAATTCTAACTCATCATTGATGGCTACTGCTGAGCATAAAATTTTTGTGGCAGACTTCTAACTCATCATTGTATCCAG PhaseCut66: +Start +End FragmentLength FragmentNumber 2124 2220 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTTAAACATGTTT 2122 - 44.63 28.56 79.54 17.1 22.83 0 0 0 285.99 61.19 92.36 GACCGTTCGTCTTATTCAAAAAAT 2146 - 1.58 1.11 4.15 0.61 0.99 0 0 0 5.14 0.99 8.18 TTAAGTAATTATTAATTCTTTTCC 2170 - 0.2 0 0 0 0 0 0 0 0 0 0 TATCATTTGATTCATTGTTAAATA 2194 - 0 0 0.22 0 0 0 0 0 0 0 0 TCATTTGATTCATTGTTAAATATA 2196 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123c 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123b 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123a 2114 2135 PhaseCut70: +Start +End FragmentLength FragmentNumber 2125 2221 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2125 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAAATT 2147 - 2.96 1.33 4.81 0.2 3.72 0 0 0 11.75 4.44 28.29 TAAGTAATTATTAATTCTTTTCCT 2171 - 0 0 0.22 0 0.25 0 0 0 0 0 0 ATCATTTGATTCATTGTTAAATAT 2195 - 3.95 1.55 5.9 1.02 5.71 0 0 0 5.51 0.16 5.85 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123c 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123b 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123a 2114 2135 PhaseCut71: +Start +End FragmentLength FragmentNumber 2128 2200 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TGACTTTTTTAAACATGTTTGACC 2126 - 2.76 0 3.71 0.61 5.21 0 0 0 1.1 60.04 3.51 GTTCGTCTTATTCAAAAAATTTAA 2150 - 0 0 0 0.2 0.5 0 0 0 0 0 0 GTAATTATTAATTCTTTTCCTATC 2174 - 0 0 0.22 0 0.5 0 0 0 0 1.81 0 AATTATTAATTCTTTTCCTATCAT 2176 + 0 0 0 0 0 0 0 0 0.37 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123c 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123b 2114 2135 LOC_OS02G48290 3302 LOC_OS02G48290.1-1 osa-miR2123a 2114 2135 >LOC_OS02G54650.1-5 GTTTTGACTATAAATTCACCTTATTGCTCTGAAATAAATATATACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCCCACATTCATTTATATGTTAATGAATCTAAGCATATGTATGTGTTTAGTTTCATTAACATATATATGTATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGGAGTAATATACTTTGAAGTTATAAAAATAAGGGCAATAGTTAATATGCTATTAATATTTCACTATTCACTCCGTACTCTAGTTAATTAAGTTATTTGAAAGCAATGGAGCTATAAACCTGAAGAAAGTTATTTGTATGTTGAGTTATACAATGACACTATATGCTATCTAGGCCAGAAATAATTCAAATAGTTCATGTTTCACTATTTTCAATAGTACTTCAAGTTGCATATATGCTATTCATATCTCTGCTTACTAAGTATGTGTAGTAGTTTTTGTATGCTGTGCTTGGTGTTGTAATCCAATGCGATTATTGCTGTTTCGTGGACTTTATTAACATTTGTTGTGAAGAACGAGATACTCACCAACAATGTAGTCCTGTCCATATAATTATTCGATAGATTGCTCTAGCATTTTGTTTTCCTCTGTCAGTTATCAATAAATGCTTAAAAAACATCACACCGCCTCCTTTTTTGTGAATGTTCTCGGATGAACATGTTAATACATATGGTTTTGTTAAAGGACCAAATCTAATATTGTGCAG PhaseCut19: +Start +End FragmentLength FragmentNumber 2822 2894 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 2820 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AGCATTGCCCACATTCATTTATAT 2844 - 0 0 0 0 0 0 0 0 0 0 0 TAATGAATCTAAGCATATGTATGT 2870 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G54650 7791 LOC_OS02G54650.1-5 osa-miR1436 2813 2833 LOC_OS02G54650 7791 LOC_OS02G54650.1-5 osa-miR1436 2813 2833 PhaseCut20: +Start +End FragmentLength FragmentNumber 2825 2873 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGACTTTCTAGC 2823 - 2.37 0.22 1.75 0.2 3.47 0 0 0 0.37 15.95 0.94 ATTGCCCACATTCATTTATATGTT 2847 - 0 0 0 0 0 0 0 0 0 0 0 TGCCCACATTCATTTATATGTTAA 2849 + 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G54650 7791 LOC_OS02G54650.1-5 osa-miR1436 2813 2833 LOC_OS02G54650 7791 LOC_OS02G54650.1-5 osa-miR1436 2813 2833 >LOC_OS02G56740.1-10 GTATAAAATCTTAACTCGTACTTCATGCGTTTCAAAGTTACTAAATATATAAAGCTGCGATACATATAAGTAAGCATGGGCATCATTTTGCGCTCTAGGAGATTTCATTTTGAGAAACCAATGGCAACCGCAAACAGAGAAAAAGCCAATTTTACACAGAAAACATATATTTTATTTGACTTCTTGTATTAGTTTTAAAGCTCAAATATAAAGTAGATTTTTATTCTTTTGCCAAAGATGCTATGATAAAGCGCTCCTTTTCTTATTACTAACCAAATTACCCATGCATTGTGTTGGGTTTAAAACTATATATATTATACAGTTTTTTAGACCAAAGTCGATCACAGATTGATCCAGCTTTATAACAAAGCAAAGACAGGACATTTTCGTTTACAGCCAACAGAGTACTAAAAGGAACAAACAAAAGCAGAACCAGGCTAAAAACTGAGGGTAAAACGCCTGGGAACTCCAGCTTACAAAGCATAGCATCATCTAACAAAAACAAGCAACTTTAGCCCCAGCAACCCGCAGCAACGAACTTCAGATGTCGATAGGCAACACATCAGTTGGTCTTAAGCTTCGAGTCTTCGTTGTTAGCCTGTCAATGATACCTTCCATATTGTCTCGTCCTTCTTGTGTCTGGAGCAACTGTCATATTTGTAACTACCCAATTGCCTTGAAGATCAGCTGTGCAGGAGATATAATCAAAATATTTTCAAACACGAAATCATTCCTTGTGGTCCACAAGGTCCAGCATACAGCTGCCAGGGTCAGCACAGAACAATTTAGCTGTTTACCACTTCTCTTCTCTACCCCTATTAACCTAAAGAAATCCTCCCAGTCCCGTGGAACCATCCCAAAACATCTCTCACCACACTCCAAGTAAAATATGCTACAGGGCAATTATACAAGATATGATGAGTGTTTTCAACCTCCCCAATTCCTCTTCCTAAGTTGCACAGCACTCAGGCTTCTGTCCCAAGAAACCATATACAAAAAATGTTTTATTTTAAAGGGATTTTGGTTTTCCAAATTATCATTGTTCTACTGTCTTTCACCCCTCCAATAGTGATCAATCTATACAGTGATTTTGCTGAATACTCCCCTTCTTTCTTATGTGGCCATATCATTCATCTCTTTGGTTGTTGAACTCAGGTATCCCTATCATCTCTTTCAGCTTCTCAATATCTTATCTTCCTGCCTCAACTTCTTCTAAAGTTACTCCCATTTACCCTCTTTCACCATCTCCTTCACCAGCTTCCCTTTTTGGGTACTTATTGCATGCAAACTCTGAGAAAACACTATATAAAGTGACATGTGCAACACAATTTAGTCGTCTATGTAATATACTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGTTCACATTCATATAGATGCTAATGAATCTATATATAATAATGTCTAGATTCATTAGCATCTATATGAATATGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGAGAGTACAAAACAAAGAGGTGGTGGTGGGATGGCGGACTCACCACTACCATTACCATTAGCTTCTGTTATACAATAGAGACTATTCATCTATCAAAGCTTCTCTCAAAATTTTATGACCTTATGTTTAGTTCTGTCTATGCTGTGTCTATATCCACCATAGTTGATTGATTTTGTGCAATGTCATCCTTACTTTTCAG PhaseCut32: +Start +End FragmentLength FragmentNumber 5073 5121 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGACTTTCTAGC 5071 - 2.37 0.22 1.75 0.2 3.47 0 0 0 0.37 15.95 0.94 ATTGTTCACATTCATATAGATGCT 5095 - 0 0 0 0 0.25 0 0 0 0 0 0 TGTTCACATTCATATAGATGCTAA 5097 + 0.2 0 0 0 0 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G56740 9232 LOC_OS02G56740.1-10 osa-miR1436 5061 5081 LOC_OS02G56740 9232 LOC_OS02G56740.1-10 osa-miR1436 5061 5081 LOC_OS02G56740 9232 LOC_OS02G56740.1-10 osa-miR1436 5061 5081 >LOC_OS02G56740.2-9 GTATAAAATCTTAACTCGTACTTCATGCGTTTCAAAGTTACTAAATATATAAAGCTGCGATACATATAAGTAAGCATGGGCATCATTTTGCGCTCTAGGAGATTTCATTTTGAGAAACCAATGGCAACCGCAAACAGAGAAAAAGCCAATTTTACACAGAAAACATATATTTTATTTGACTTCTTGTATTAGTTTTAAAGCTCAAATATAAAGTAGATTTTTATTCTTTTGCCAAAGATGCTATGATAAAGCGCTCCTTTTCTTATTACTAACCAAATTACCCATGCATTGTGTTGGGTTTAAAACTATATATATTATACAGTTTTTTAGACCAAAGTCGATCACAGATTGATCCAGCTTTATAACAAAGCAAAGACAGGACATTTTCGTTTACAGCCAACAGAGTACTAAAAGGAACAAACAAAAGCAGAACCAGGCTAAAAACTGAGGGTAAAACGCCTGGGAACTCCAGCTTACAAAGCATAGCATCATCTAACAAAAACAAGCAACTTTAGCCCCAGCAACCCGCAGCAACGAACTTCAGATGTCGATAGGCAACACATCAGTTGGTCTTAAGCTTCGAGTCTTCGTTGTTAGCCTGTCAATGATACCTTCCATATTGTCTCGTCCTTCTTGTGTCTGGAGCAACTGTCATATTTGTAACTACCCAATTGCCTTGAAGATCAGCTGTGCAGGAGATATAATCAAAATATTTTCAAACACGAAATCATTCCTTGTGGTCCACAAGGTCCAGCATACAGCTGCCAGGGTCAGCACAGAACAATTTAGCTGTTTACCACTTCTCTTCTCTACCCCTATTAACCTAAAGAAATCCTCCCAGTCCCGTGGAACCATCCCAAAACATCTCTCACCACACTCCAAGTAAAATATGCTACAGGGCAATTATACAAGATATGATGAGTGTTTTCAACCTCCCCAATTCCTCTTCCTAAGTTGCACAGCACTCAGGCTTCTGTCCCAAGAAACCATATACAAAAAATGTTTTATTTTAAAGGGATTTTGGTTTTCCAAATTATCATTGTTCTACTGTCTTTCACCCCTCCAATAGTGATCAATCTATACAGTGATTTTGCTGAATACTCCCCTTCTTTCTTATGTGGCCATATCATTCATCTCTTTGGTTGTTGAACTCAGGTATCCCTATCATCTCTTTCAGCTTCTCAATATCTTATCTTCCTGCCTCAACTTCTTCTAAAGTTACTCCCATTTACCCTCTTTCACCATCTCCTTCACCAGCTTCCCTTTTTGGGTACTTATTGCATGCAAACTCTGAGAAAACACTATATAAAGTGACATGTGCAACACAATTTAGTCGTCTATGTAATATACTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGTTCACATTCATATAGATGCTAATGAATCTATATATAATAATGTCTAGATTCATTAGCATCTATATGAATATGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGAGAGTACAAAACAAAGAGGTGGTGGTGGGATGGCGGACTCACCACTACCATTACCATTAGCTTCTGTTATACAATAGAGACTATTCATCTATCAAAGCTTCTCTCAAAATTTTATGACCTTATGTTTAGTTCTGTCTATGCTGTGTCTATATCCACCATAGTTGATTGATTTTGTGCAATGTCATCCTTACTTTTCAG PhaseCut32: +Start +End FragmentLength FragmentNumber 5073 5121 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGACTTTCTAGC 5071 - 2.37 0.22 1.75 0.2 3.47 0 0 0 0.37 15.95 0.94 ATTGTTCACATTCATATAGATGCT 5095 - 0 0 0 0 0.25 0 0 0 0 0 0 TGTTCACATTCATATAGATGCTAA 5097 + 0.2 0 0 0 0 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G56740 9232 LOC_OS02G56740.2-9 osa-miR1436 5061 5081 LOC_OS02G56740 9232 LOC_OS02G56740.2-9 osa-miR1436 5061 5081 LOC_OS02G56740 9232 LOC_OS02G56740.2-9 osa-miR1436 5061 5081 >LOC_OS02G58460.1-2 GTAAGCAAGCAGGTTTTTTCCAATATGGGTGTTTATATTTTTATGGTGCTCCTTAGTATTATAACACTTCATCCAGATTGCTTCTGTATATGATACCTGCAACTGCGAATCAACAATATACATATAAATCAGCTTAACAGACATTAGTACATGATTGACTGTTGAAACTAGTTTCTTTAGGGGAAGTGAGGATGCAACCTTTGATTTTCTAAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCATATACATATTGATGTTAATGAATCTAGACATATATATATCTATCTAGATTTATTAACATTAATATGAATGTAGGAAATGCTAGAATGACTTACATTGTGAAATGGAGGGAGTAGTTGAATAGCAGATCGTTTCAATCATACTGGCCTTTTAAGGTTGAACCCAAGTGTATAGCGTAGCATGCAAAAATTTCAAGCCTTAACTGCATATTTGGACAGCTGCAGTTATTCTATTTAAATGATCTAACAGTACTTCTGGGAAGATCACCATTGAACTTGAATACTCAGTGGTTTTTACCACACTATAGTAGTTAATTCACAATCATGTTTGCATCTATATTGAAAAATCATGTTTTCTTTCTGTAGTTAATTATTCAATTCAGTGGGGAGTTCTTTCTGAACATAATACTGCCGATGCCTTTTGCATTTAAGGACTCTGTTCCTGTCTGTGCTACTTATATATAGGTTTGTTGATGCTGCAGACACCCTATTAATCTAGTTATTTCCTCATGTTTGGTGTTTTGCATTTTTTTTTCTTAG PhaseCut27: +Start +End FragmentLength FragmentNumber 2173 2269 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2171 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCATATACATATTGAT 2195 - 0 0 0 0 0 0 0 0 0.37 0 0 GTTAATGAATCTAGACATATATAT 2219 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATAT 2221 + 0 0 0 0 0 0 0 0 0 0.16 0 CTATCTAGATTTATTAACATTAAT 2245 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G58460 4063 LOC_OS02G58460.1-2 osa-miR1436 2164 2184 LOC_OS02G58460 4063 LOC_OS02G58460.1-2 osa-miR1436 2164 2184 PhaseCut35: +Start +End FragmentLength FragmentNumber 2178 2262 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2176 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCATATACATATTGA 2197 - 0.2 0 0 0 0 0 0 0 0 0 0 TGTTAATGAATCTAGACATAT 2218 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATATCTATCTAGATTTATT 2239 - 0 0 0 0.2 0 0 0 0 0 0 0 ATATCTATCTAGATTTATTAA 2241 + 0.2 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS02G58460 4063 LOC_OS02G58460.1-2 osa-miR1436 2164 2184 LOC_OS02G58460 4063 LOC_OS02G58460.1-2 osa-miR1436 2164 2184 >LOC_OS03G01720.1-9 GTAAGTGATATTATTATTTTAACCTCGCTCTTCTCTTATGCTATAGTGTATTATACTTCCTCCGTCCCATAATATAAGGGATTTTGACTTTTTCTTGCACTGTTTGACCACTTGTCTTATTCAAAAAATTTTGAAATTATTATTTATTTTATTTGTGAATTACTTTATTATCTAAAGTACTTTAAGCACAACTTTTCGTTTTTTATATTTGCACAAATTTTTTGAATAAGACGAGTGGTAAAACAGTGCAAGCAAATAGTCAAAATCCCTTATATTATGGGACGGAGGGAGTATGTATTTTCTTCTTAATTGCCACATTTACCAAGCCTATATATGTGATTTACAAACCTGATCTTAAGGTAAGTTGCATCATTTTTGTTCCATTATTTTTACTGGATTACATGCCATATGCTCGGCCCAACGAAGCCACATGTACAAGAAAAAAAAAACTCTTAACAAGAACAAGTCAGTTTTCCATGCATACATAGGGTCATTAGACAATTTTGCTTACATAGTGATCTTCTTTGCTGAAGCTCCGGTGGAGCCAATGAGGTACTCAGTGGCCACACGATGCAATCCTGATCTGGAAAACTGTCTATGCATGACATGTCAAATGGTGCAGATTTTCTCATTGAAGTTGGCTCACACTAGTATAAATAGTGGTCCAACACAGTTATATGGATATATTGCAG PhaseCut14: +Start +End FragmentLength FragmentNumber 5423 5519 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTCCCATAATATAAGGGATTT 5421 - 7.7 4.21 6.12 1.22 2.73 0 0 0 0.37 0.33 0.23 TGACTTTTTCTTGCACTGTTTGAC 5445 - 0 0 0 0 0 0 0 0 0 0 0 ACTTTTTCTTGCACTGTTTGACCA 5447 + 0 0 0 0 0 0 0 0 2.2 0.33 0 CACTTGTCTTATTCAAAAAATTTT 5469 - 0.39 0.22 0 0 0.25 0 0 0 0.73 0 0.23 CTTGTCTTATTCAAAAAATTTTGA 5471 + 0 0.66 0 0 0 0 0 0 0 0 0 AATTATTATTTATTTTATTTGTGA 5495 + 1.38 0 0.44 0.2 0.74 0 0 0 0.73 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G01720 6907 LOC_OS03G01720.1-9 osa-miR1436 5415 5435 >LOC_OS03G01770.1-2 GTTCACTACTCTCCTCTCTTTTCTTTTCTTTTGTTTTTTCTTCATTTCGTATTATTCAACATCACTTGTAAGCAATCTGCGGCTCAGCATCAGGTGGCTTCGTATCTCACAAAATGTTCCATTGCCATGCAACCACCCACTTGAGCTTCACAAGCCTGTGGTTGAACTTGTCTTCATGAACTCTCTGATTTAGTTAGAGCGGACATCAAAGGGCTTGGAAACTCAAGTCCTCAAGTTATCTTTTGTTGCTTGCTTGCTTTCCATTTGAACAACTCTAATTTATCTCTTGCACATTCTGTTTCTCTTGAACAAACAGTATATCCTTTCCTCCTCTGTTGATCTCCTGTTTGTAGCAGCAAGTGGCATGAGGATGGTTTTTATTTCCCTCTTTCTGGGTTGCAACTATATACTCCTTTCAAAATGTTTGATACCGTTGACTTTTTAGCACATGTTTAACCATTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGAGTACATGAAAGTATATTCAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTAGTAATAAATACTCATAAAACGCTGGTGTGGATGTATTGGGTTCTAATACAGATGTTTCATCCTTATCTCCTAGCCAAAACAGTAATCTAGCCATTTAAATATTCTACCTGAGTTCCTGCAATAGTTTTCCACAGGTAGGTAAAAATCTTGCATATCAGTGTATTAAGCAGGAAAAGAGCTGCAATTTTTCATCATAAAACAATATGATGTACTCTTAACTATGCTTCTTGGTAAATGCACTTACGGTTGTCCAGCAATGGAAATGCAATAAGAAACCTAAACCAAGCCATATGTGCTATGTTTCCTCCTATATTCGGATTTTGGTCAATTGTGTTCTTTCATACCAAAATTTAAGACACTTCCACTGTTTTTTTTTCTTTTGGAAACCTGCAG PhaseCut19: +Start +End FragmentLength FragmentNumber 809 878 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACCGTTGACTTTTTAGCACATGT 807 - 3.16 0.66 2.19 1.83 0.74 0 0 0 2.94 1.48 0.7 TTAACCATTCGTCTTATTCAAAA 830 - 0 0 0 0 0 0 0 0 0 0 0 AAATTGTGAAATATGTAAAACTA 855 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 PhaseCut20: +Start +End FragmentLength FragmentNumber 810 879 23 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 808 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TAACCATTCGTCTTATTCAAAAA 831 - 0 0 0 0 0 0 0 0 0 0 0 ACCATTCGTCTTATTCAAAAAAA 833 + 0 0 0 0 0 0 0 0 0.37 0.16 0 AATTGTGAAATATGTAAAACTAT 856 + 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 PhaseCut28: +Start +End FragmentLength FragmentNumber 814 877 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TGACTTTTTAGCACATGTTTA 812 - 0.39 0 0 0.41 0.74 0 0 0 0 0 0.23 ACCATTCGTCTTATTCAAAAA 833 - 4.54 1.99 1.97 11.6 7.94 0 0 0 0.37 0 0 AATTGTGAAATATGTAAAACT 856 + 0 0 0.22 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123c 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123b 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR2123a 800 821 LOC_OS03G01770 1845 LOC_OS03G01770.1-2 osa-miR1884b-3p 795 818 >LOC_OS03G05150.1-1 GTATGAGAGTGTAAAGGTTAGGAGGGAGCATGGACATAGGCTGGAAAATGCTCTTGGAATTATTGAGAGCTTCGGGAGACATGGCCCATGTGGTTAAGAGAATGTGCGAAAGGGGATTGATCACTCGTCATTGGAGAGAGAATTTTGTCTTGCTGGTTTAAACAACGAGAATTGCAATCATTGTAAACACAGAACATGGAAGTTTTCATTGGAGCCGATTCCCTATTTTCGTTGTGTCAATAACATGGTTGTTTTTGCAGATATAATACATAGTTCTAAAGTATGGGCATGAAACGGAATTGCTGTTCAATTGCCGACGGCCTGAAAGGAGTACACATTCATTCTAGTATATTTCTACTCTACCGTGTTCCGTATTGGTACATACTAATTTTCAGTTTGTTCTGATCAATGTTCAAGTATGACAGCAAGCAGTTTTTTCCACCATTTTCATCTTTTAGAACAAATTAAGCTTTAAGAAATTCAGTTAAACTCAACCATCATATATGAAAGAAAGAAGGGATAACACAAGTGGTGGTCTTAATAGTTCAGTAGTCTGAACAAATGGAATTTTACTAAGCGGACACGCACGGTTAACGCCAAGATTACTTTAGTTGAATACTCCCTCCGTCCAAAAAAAGGCAAACCATGGATTTTCGTGTTCAACTTTGACTGTCCGTCTTATATGAAAATTTTTTATAATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATAAATATTTTATGCATGACTTGTCTTTTTAATTTTTTTTCATAATTTTTTCAAATAAAACGGACGGTCAAATATTGGGCACGGAAATCAGGTTTTGTCTTTTTTTTTTATTTTAGGACGTAGTGAGTATGTGTAAGTAGATTTTAGTGAAGGCAGGGGTAGAGATGCAAGCGTGTCCTGGTGTTAAACAAATGATTGACCAAAAATTAGTATGCTATTCTTATCTTGCAG PhaseCut22: +Start +End FragmentLength FragmentNumber 685 757 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCAACTTTGACTGTCCGTCTTATA 683 - 0 0 0.22 0 0.25 0 0 0 0 0 0 AAAATTTTTTATAATTCGTATTTT 709 + 0 0 0 0 0 0 0 0 0.37 0 0 TTCATTGTTGTTAGATGATAAAAC 731 - 7.31 1.55 9.18 1.63 12.41 0 0 0 2.57 12.67 0 CATTGTTGTTAGATGATAAAACAT 733 + 0.2 0 1.31 0 1.74 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G05150 2898 LOC_OS03G05150.1-1 osa-miR812m 677 700 LOC_OS03G05150 2898 LOC_OS03G05150.1-1 osa-miR812l 677 700 LOC_OS03G05150 2898 LOC_OS03G05150.1-1 osa-miR812k 677 700 LOC_OS03G05150 2898 LOC_OS03G05150.1-1 osa-miR812f 677 700 >LOC_OS03G08370.1-4 GTAAGACCCCTTGGTAGAACTGAACTCACTTGTGCAATACTTAATTTCTAAAAGCAATATTGGTGCTTTTGCTCTTCTCATAGTATTTTGTATGCACCGCCTTCTGAGGCAAGCAATCCATTAAGTTTGTATGCACTCAAATTTTGTTAGAAAAATATTCTCAAGATCGCCACATTCCATGGTTGTATACGATTTGAGACCACTGGTGACAAAAGAATACGCTCACATCTTTTTGTGCATTTCTGGCTTTTAGATATACAGAAGATTAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATCAATATGTATGTGGGAAATGCTAGAATGACTTACATTGTGGAACGGAGGAAGTATCTATTAATTGGAACACTCAATATAAGTAAATTAGACTCATGATTATATGGAAGATTTTTTTAATTTGCCTTTCTGACTTTTGGTTGTTTTACAG PhaseCut55: +Start +End FragmentLength FragmentNumber 3871 3919 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3869 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3893 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 3895 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 PhaseCut60: +Start +End FragmentLength FragmentNumber 3872 4016 24 9 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3870 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3894 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3896 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 3918 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 3920 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAATATCAAT 3942 - 0 0 0.22 0 0 0 0 0 0.73 0 0.23 ATCTAGATTCATTAATATCAATAT 3944 + 0.2 0 0 0.2 1.49 0 0 0 2.2 2.3 0 GTATGTGGGAAATGCTAGAATGAC 3968 + 0 0 0 0 0 0 0 0 0 0 0 TTACATTGTGGAACGGAGGAAGTA 3992 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 PhaseCut85: +Start +End FragmentLength FragmentNumber 3877 3982 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3875 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3896 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3898 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 3917 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 3938 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 TCAATATGTATGTGGGAAATG 3961 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 LOC_OS03G08370 4605 LOC_OS03G08370.1-4 osa-miR1436 3863 3883 >LOC_OS03G10230.1-1 GTAATTTTGATGCTTCGCACAGATTACAATATACCACGGCTCACTGTTAGGATTTTGTGATCGCTTGTGTCATCTGTGCCGTGGAGTATTGTTGTACTACAGTCTAGTCTTCTACAAGTACATTCTTTGAGCTCAATCGAAATGCGTGTTAACGCTTTGACTCTTAAGTTTGTTTTATTTGGAATGATAACTTTAAGTTTGTCTGTTTGCTTCCACCTCTGAGGTGCAACACTTATTCAGAATTACATGTCAACTAATGTAAGTGTGTTATGCACACCATCTCGTTTGCTTTTCCGTACAATACAACTACAGGATGCTTATACATGCTTTTATATGGAGATAGAGTTGCGTTTATTGTACAGCTCTTTCGCTTAGTTCAAAAGGCACAATTTTAATTCTTAGGATGTCATTGTAAGTTCTAAGATTGAGATATATTTGATCAAGTCTATATCACTACGGTCTGAACCCACCTTGATTACTGGTGTAAGATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCATATTCATATTGATATTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGATGAAGTATATATTTTTTAACTTGCCTAACGTTCTAGAAGTACTTCAGAACCATTAAGAGAATACATGGAGGTTTAGTTTTTTTTACTACTATGCTAATATACTCCCTCCATTTCATATTATAAGCCGTTTTGATTTTTTTCCTAATCAAACTTTTTAAAATTTGACCAAATTTATAGAAAACATAGTAGTATTTTCAACACAAAAGAAATATATTATCAAAATATATTCCATGTTAGATTTAATGAAACTAATTTGGTGTTTTAGATGTTACTGAATTTTTCTATAAATTTGGTGAAACTTACAAAAGTTTGACTAGGAAAAAAGTTAAAACGACTTGTAATATGAAACGGAGGAAGTAATAGATAGATGATTTCTTCACAATAGTTGTGCAGATGCTCATATGCTTATCTGTTTTTGCAG PhaseCut46: +Start +End FragmentLength FragmentNumber 1204 1324 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1202 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCTCATATTCATATTGAT 1226 - 4.54 0 6.99 1.22 5.21 0 0 0 13.95 3.45 5.14 ATTAATGAATCTAGACATATATAT 1250 - 0 0 0.22 0.2 1.49 0 0 0 0 0 0.7 TAATGAATCTAGACATATATATCT 1252 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1274 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 GAATGTGGGAAATGCTAGAATGAC 1300 + 11.45 13.06 10.71 3.66 4.47 0 0 0 0 50 3.04 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G10230 5185 LOC_OS03G10230.1-1 osa-miR1436 1195 1215 >LOC_OS03G16080.1-6 GTAAGTAATCTGTAAACGAATGCTGATTACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGTAAGAATGACTTACATTGTGAAATGGAGGGAGTACAAAGTATTCTGTATTACTGAGGTGTGACGAGCTTTTCTCAAGAATGAAACGTACAATGTGGAACGGTTGTGTGAATACACAAATTATGTGCAAAATAGAAAGACCCCACTTTGCTAGAATTTGTTTCCCCCACTTCTAAAGAAGTTACCATGTAATCCACAAACTATTTTTATAGTTGAATAACATAGGAACTATTTTTTTGCACTGTTCCACTAGTTTATGCTCTGATTCTGTCTAGACTTTTGTTATTGGAGCAAATTGGTCAATAACACCTCAAAGATCAATTATCTGTTGTATTTTTTGTCACTAAGTGAACCTTGCTCTGATCATTATCATTTATTATATTTCAG PhaseCut50: +Start +End FragmentLength FragmentNumber 2028 2112 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 2026 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCACATTCA 2047 - 1.18 0.89 0.66 1.63 0 0 0 9.25 0 0 0 TTGATGTTAATGAATCTAGAT 2070 + 0.2 0.22 0 6.11 2.48 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 2089 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 2091 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 PhaseCut56: +Start +End FragmentLength FragmentNumber 2029 2125 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2027 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCACATTCATATTGAT 2051 - 8.1 5.31 8.09 1.83 7.45 0 0 0 40.75 1.97 5.85 TAATGAATCTAGATAGATATATAT 2077 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAACATCAAT 2099 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 PhaseCut74: +Start +End FragmentLength FragmentNumber 2032 2116 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCT 2030 - 4.54 1.99 0.66 8.35 2.98 0 0 0 0.73 0 0.23 AGCATTTTCCACATTCATATT 2051 - 3.95 2.88 0.66 4.28 1.24 0 0 0 0.37 0 0 CATTTTCCACATTCATATTGA 2053 + 0 0 0 0 0.25 3.17 0 0 0 0 0 GATGTTAATGAATCTAGATAG 2072 - 0 0 0 0 0 0 0 0 0 0 0.23 TGTTAATGAATCTAGATAGAT 2074 + 0.59 0 0.22 0.41 0.25 0 0 0 0 0 0 ATATATGTCTAGATTCATTAA 2095 + 0 0 0 0.81 1.24 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 PhaseCut86: +Start +End FragmentLength FragmentNumber 2034 2139 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2032 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTTCCACATTCATATTGATG 2055 + 0.59 0 0 0.41 1.49 0 0 13.62 0 0 0 TTAATGAATCTAGATAGATAT 2076 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 2097 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATCAATATGAATGTGGGAAA 2116 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 2118 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.1-6 osa-miR1436 2020 2040 >LOC_OS03G16080.2-6 GTAAGTAATCTGTAAACGAATGCTGATTACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGTAAGAATGACTTACATTGTGAAATGGAGGGAGTACAAAGTATTCTGTATTACTGAGGTGTGACGAGCTTTTCTCAAGAATGAAACGTACAATGTGGAACGGTTGTGTGAATACACAAATTATGTGCAAAATAGAAAGACCCCACTTTGCTAGAATTTGTTTCCCCCACTTCTAAAGAAGTTACCATGTAATCCACAAACTATTTTTATAGTTGAATAACATAGGAACTATTTTTTTGCACTGTTCCACTAGTTTATGCTCTGATTCTGTCTAGACTTTTGTTATTGGAGCAAATTGGTCAATAACACCTCAAAGATCAATTATCTGTTGTATTTTTTGTCACTAAGTGAACCTTGCTCTGATCATTATCATTTATTATATTTCAG PhaseCut50: +Start +End FragmentLength FragmentNumber 2028 2112 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 2026 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCACATTCA 2047 - 1.18 0.89 0.66 1.63 0 0 0 9.25 0 0 0 TTGATGTTAATGAATCTAGAT 2070 + 0.2 0.22 0 6.11 2.48 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 2089 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 2091 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 PhaseCut56: +Start +End FragmentLength FragmentNumber 2029 2125 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2027 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCACATTCATATTGAT 2051 - 8.1 5.31 8.09 1.83 7.45 0 0 0 40.75 1.97 5.85 TAATGAATCTAGATAGATATATAT 2077 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAACATCAAT 2099 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 PhaseCut74: +Start +End FragmentLength FragmentNumber 2032 2116 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCT 2030 - 4.54 1.99 0.66 8.35 2.98 0 0 0 0.73 0 0.23 AGCATTTTCCACATTCATATT 2051 - 3.95 2.88 0.66 4.28 1.24 0 0 0 0.37 0 0 CATTTTCCACATTCATATTGA 2053 + 0 0 0 0 0.25 3.17 0 0 0 0 0 GATGTTAATGAATCTAGATAG 2072 - 0 0 0 0 0 0 0 0 0 0 0.23 TGTTAATGAATCTAGATAGAT 2074 + 0.59 0 0.22 0.41 0.25 0 0 0 0 0 0 ATATATGTCTAGATTCATTAA 2095 + 0 0 0 0.81 1.24 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 PhaseCut86: +Start +End FragmentLength FragmentNumber 2034 2139 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2032 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTTCCACATTCATATTGATG 2055 + 0.59 0 0 0.41 1.49 0 0 13.62 0 0 0 TTAATGAATCTAGATAGATAT 2076 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 2097 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATCAATATGAATGTGGGAAA 2116 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 2118 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 LOC_OS03G16080 3257 LOC_OS03G16080.2-6 osa-miR1436 2020 2040 >LOC_OS03G19890.1-1 GTCCGCATTTCTCCCCCTCCCCTACGCCCCATCTCCATTCCTGTCGCTTATTTAGTTACTTCTTGTATTAATTCCTTATTCCTCCTACTGATCTGTCGACAAGAATCAGGGTAGTTGATGTGTAGATGTGGCCACTGGCTACCCATTTCTTTGATTCAACCAGTTATTTGATCCGATATACAACTGATCCGTGGACAATAACATCGTAGCGATTGGTATTTGATTTTCTTTTGGCTCCCTTTAATAGCACTGGTAGGGCAAATTATCAGCGTTGACAGTATGGTGTTTGCCAGTTTGTTGATTGGGGAGGGGGGGGGATGGAATGCTTTTTAGGTTGTCTGCTGTGCTGCCTATTAGTAAAATGCCTTAATTATTTTTCAGCGCTTATTTAAGGATCATGGATGTTCCATTTTACCTTTTGGTCACTAACCTAAGATTTTTTGTGAACTGACTGGTGCTTGTAACTTAACCAGAGTGTGTTCATTGCCATATTCACCATACTGTTGCTTTGTGTATGTCTGGTGGAGTGCCATGTATGTAAAATCTGGCTGGTCTGGAATCTAGTTCAGGCGTTGGGCTGGTGCTATGCATTGCATGTAGTAATGTACTGGTGTATTACTTCAGTGCTTTAAAATTTCTTCTTTGCTAGAATCCCAGTGAGTCAGTGTAATATTTGTTTTGTGAAAATTCAAATGAAATACATAGGTTTCCATTTTACATGATATGGCATAGAGAGGGAATTAGGAATATGGTGATGTTACTTGCGTGAGTAAGAAGAAATATGCTCCACAATCTTCGTAATTGTAGAGCATTTCTCTTCTATCTAAAGTCTATTCATCACACCTAATTGAAATAAACTTTACAAATACCATGCCGAACGACTGGGGAAAAAAAGGCTGAACCAAATAATCACTCACCCATGTCCCATGCACATCTTACCAATCCAGAGCACTCTCACTGATCGATGCTCTCTCAAATCTCAATACAGTGTATTGTTTTTTGTATAGAACTATGAATGAATGTAACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGAAAAATGCTAGAATGACTTACAATCTGAAACGGAGGAAGTATATTATAATTTGCATGGCATTAGCAACTTAATAGTGATTAAGAATTCACGTAACCATGCCACTACCCTTTACACTGAGTATCTAATAAGATTACGACATAAGGTGCACAACTATAGCTGTCTAGATCAGTCCTGTTGCTGCCATTAGCAACTGATACAGATTGGGTGCATGAGTTAAGCGCTTTGCAGAAACATTTTTTTCTTAAGTCTGTTTAGCCTGCTCTGTGATATTCTGAACTGTTGCATTATATGTATGGTTCAGTTTGTTTCCAATGACCAAGCTCACCCGTATGAAGGACATAGAGAATTGTAGCATATAGACCTTGTCGATCAACTGAATAATGTGTAGAATATTAGAAGCAAAATTGGTTATGAGGAATAGTTTGTTTGGCAATTTTGATGTGCATTGCATACATTGTCTTGTGCATTTCAATCTGTCATCCATATGTTTGCCTGTAGAACTGCCAGAATGGTTTTTATTTTTTAAAGAAAAGCACCATTTGGCTAAAACATGATTTTCAAATGCAAGTCTACTATCATTTGTCTTTTTTATCAATAGCTTGCTAAATTATCAAAACTATAACACTAGATTGGCATCCTTAATCAACTTAAATGTCTGTTCTGAAAATATCACAAGGATGGCTTGACAAGCAAGTAAAACTGTAACGCCTTGATTAAGATCTCTGACAGTGTCTGTGTCTGAACTCTGCAAATATTGCATACAGCACAACTTTTCTTTTATGGGGATGCTTTAGGCTTTTACCTTAAGTATATGGACATGTTTGTTCTGTTTGTTGATATAAATCCTTACAGCCTCAGTTGTTTAATATACAATGTTTTAATGGATGGCAG PhaseCut55: +Start +End FragmentLength FragmentNumber 1537 1585 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1535 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1559 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1561 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 PhaseCut59: +Start +End FragmentLength FragmentNumber 1538 1682 24 9 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1536 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1560 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1562 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1584 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1586 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1608 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 ATGAATGTGAAAAATGCTAGAATG 1632 - 0 0 0 0 0.25 0 0 0 0 0 0 GAATGTGAAAAATGCTAGAATGAC 1634 + 0.2 0 0 0 0.25 0 0 0 0 0.99 0 TTACAATCTGAAACGGAGGAAGTA 1658 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 PhaseCut63: +Start +End FragmentLength FragmentNumber 1539 1649 22 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATTC 1537 - 0.39 0 0 0.61 0 0 0 0 0 0 0 TAGCATTTCCCACATTCATATT 1559 - 0.99 0.66 1.31 2.44 0 0 0 0 0 0.82 0.47 TGTTAATGAATCTAGACATATA 1583 + 0.59 0 0 0 0.5 0 0 0 0 0 0 TATATCTATCTAGATTCATTAA 1603 - 0.39 0 0.22 0.61 0.5 0 0 0 0 0 0 TCAATATGAATGTGAAAAATGC 1627 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 PhaseCut79: +Start +End FragmentLength FragmentNumber 1542 1662 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 1540 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 1564 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 1566 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATCTATCT 1590 + 0.39 0 0 0.41 1.74 0 0 0 0 0.33 0 CTAGATTCATTAACATCAATATGA 1612 - 0 0 0.22 0 0 0 0 0 0 0.16 0 GTGAAAAATGCTAGAATGACTTAC 1638 + 0.2 0 0 0 0.25 0 0 0 0 0.66 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 PhaseCut82: +Start +End FragmentLength FragmentNumber 1541 1655 19 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCT 1541 + 0.59 0 0.22 0 0.74 0 0 0 0 0 0 CTAGCATTTCCCACATTCA 1558 - 0 0 0 0 0 0 0 0 0.37 0 0 TTGATGTTAATGAATCTAG 1579 + 0 0 0 0.41 0 0 0 0 0 0 0 AGACATATATATCTATCTA 1596 - 0.2 0 0.22 0.2 0 0 0 0 0 0 0 GATTCATTAACATCAATAT 1615 - 0.79 0 0.22 1.22 0 0 0 0 0 0 0 TTCATTAACATCAATATGA 1617 + 0.59 0.44 0 0.81 0.99 0 0 0 0 0 0 ATGTGAAAAATGCTAGAAT 1636 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 PhaseCut84: +Start +End FragmentLength FragmentNumber 1543 1648 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1541 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1562 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1564 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1583 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 1604 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 TCAATATGAATGTGAAAAATG 1627 + 0.2 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 LOC_OS03G19890 3008 LOC_OS03G19890.1-1 osa-miR1436 1529 1549 >LOC_OS03G22450.1-7 GTATCCTATAGATCACTTCAATTCATTCTTTCTAATTTATCCTCTTGTATTATTTGCTACTGCATCCTATTCTGCAGTTGCAGCTTTATATCTTGTATATTTCTTACGACTGTGACCTTCCAATGTGTTCATCAGACATCAGACATATTAACAGCAGTCCTTAACTCTGTTCTCTCTGTCCAAGTAAATTAAGTCTGGACTTAAAAAATAAATTTCTTTAATCGGGATTATGATATCATTATGGATTATGATATCATTATGGTATTATATACTTATGTCTTTCTCTCAATCCAAAGAAATTAAGGCTGCATGCGAGAATTTTTCTTTAGTTGGGATTGTGAGATCAGCATCCCTCAACACAAAATGCTTCCTTCCAACATTATATCAATAGACAGAACAGAACCTGTGTCCACTTGCCTATATTCCCCATGGTAAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTTCACATTCATATTGATGTTAATGAATCTAGACATATATCTATCTAGACTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACAATGTGAAACGGAGGGAGTATGTATTTATTGCAATTCATCTAGTTAAAACCATAAGACACTTTCAGTGATAATGTTAAGGTTAGTGTTAGGAGTCAACTTACAGTCAATCAGTCATACTGTATTTGATCTGACTAATCTGCATGAATATAGATATATACAGTGTCAGAGGGAGATAGATTGTGGTTTTCTTAGACACAATGCCAGGCCCTGAGGTCCATAGAAAATCTTGCATACAATTCTATAGGGAATAGTTACTAAGGAAAACATTACATCAATGGAGAGAACAGAGCATTACAATCCTATAGGGAATAATATGGCAATTAGGTCCTAGTATTGAGCATTTGTTACTGCACAGAACTGATGTATTATGTCAAGATAGTTGATGTTCATGTAGAGTTTTCCATATGTTGTTAATAATGAAAGAGGATCCACGAGGTCTGAGTTTCGAGTTATTTCTGCTTTCCTACTTCCAGAATGTATTTCCTTGACTAGTTTGTACTACAG PhaseCut49: +Start +End FragmentLength FragmentNumber 2958 3054 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2956 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 CATTTTTCACATTCATATTGATGT 2982 + 0 0 0 0.41 0.25 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATCT 3004 - 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGACATATATCTAT 3006 + 0 0 0 0 0.25 0 0 0 0 0 0 ATCTAGACTCATTAACATCAATAT 3028 - 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G22450 4065 LOC_OS03G22450.1-7 osa-miR1436 2949 2969 >LOC_OS03G33012.1-3 GTAATTCTGTTTTTTAAATTGCACTTACTTGTTCCCGATGTTCTGCCATGTTTTTTCATTATATTGGAGCAACTCTGAATAGCTCAATGCAATCACTTTATTTTTTTTTGGTACAGAGCCCCATGCTATCTTGGACCCATTAATTATTCCAAAATGGGCGATCCATTTTATGCCACCACGTTCCATCAAATGTCTAGTGCCATGATGTCTCACTGGAATGTGGGTCTTGTGTTACAAGTAATAGATGTGGATGAAACTCAGTGGCATAATATGGCCTTATGATTAGAACTTGCTACTTTTATAGTTGTAGAAACATGGTGTACGAATCATTCCTTGCACTTGTTCCTGAAATATTATTGACGTGGCTGATGAATGCTGTGTGTTATTGGAGTCTGATTTGTTGTGGGGCTTCATTAAAGGATTTTCATGAGTAGAGCTGGGAGAATAGCCTTGGCTGACGGGATGATGAGGGTGAAGTGTGCCTCGTCGCTGTGTTGACAGAATGAGGGAGGGAGATTTTGGACCTTTTGGTATTTTATGCTCGCTTTACTCATATTTAGCCAAAGTCCATATATAGGAGAGGCCCACAACCAAAGGTCCTAAATTTATGGGAACATACTAATGAAGGAAATAAAGCAACAAAATAAAGAAATAGCTAATTAGGAAACATTTCTCTAAAACTTGTAGGCGTATTGTGGTGGCTGGCAGTAGAGCCAGCAATTTTACCCTGTGGGGTCCATTATCATTGCTTGATATTTTAGTGGGGCCATTTATGCAAAATTCAGTGGATTTACATGGAAAAATTAGTACCCATAAGGGTGTTAGTGAAAAAGCTGTGGGGTCAGCTGATCCCACAGTTTGTACATGGCTCCGCCACTGGCTGGTGCACTTGTAGCCCTGTGTTGGTGGGCTGTAGGTGCGCCTCCACATGATATATCCCCTCTCTGAAAGCAGCTTGTCCTCATACTGAATTGGGGAAGCACTTGATGAAGTTGTTTTGAGATCCTTGACGTATTGGCAGCTAGAGAGTTCAGCCAATGGACAAAGGGCTCGAGAGGATCACGGGCATGACGGGGCTTTGAGCAATTTGATGAGGGTATCTGGCAAACTTGTTGACACTCCAGTGGGAGTGAGGGAATTGCAGCCTTCTCTCCATGGAAGGGTTTCAGTACCCACGTGAAAGATATGTCTAGGACTCTCTTGTGTACTTCAATATAATTGGGCCTTGAACTTCCTATATACTACCTCTGTCCTAAAATATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATGTCTAGATCTATTAACATAAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTAGAACGGATGATGTAGTAGATTTTGCCCATGCAACTACATGGGCAAAATCCCTTATAGTTTGGAATTGAGGCAGTAGTACTTTCTTGCTTTATTAATCTTTAGCTAAGTCTGTATATAGGAGAGGCCCACAAGCAGAGGAAATATATGAATAAAATCAGGAAATTTTTAATCAGGACATTTCCTATACTTGGGGCCTTACTTATACCATAGAAAGTTGACTATATTTGAAAATTGTTCCAAATTATTTTTTCCAGTCAGAAATATAGATCAAAAGTTCCTGAAAAAACTAGGTTAAACTAGACTGGAATTAACCTATGAAGCTTTAAAGAACTTTCTTGAACTACTTGAACGAAAACCCTCAATATGAAACCATAGATTAAAGCTAGAACTGAGCAAACACAAGGAACATCGAGAAAAAAAAAAAACGTGTTGCATTAGGCGACTAATTCTCAATGTTTTTTTTCTATACATATTTGGGGGAAAAAATACTTCAAATCCAACTCAAGATTCTCCAAATGTAGTTTAATTTGGATGTTGTCTAGTTGTACTAAACAAAATCAGGTGTGGACTTTTTTTTTAATGCATAAGTGGGACTTAGCAAAACCAGGTTATGGACTAACCTTGGCATAATTGTGGCTGTAGCCACCTCTGAACAAGCTTTGATCCTATCCGCTTTAGCTGGTCATTATATATGATTTAGAAGGTTAACTGACATGCACTTGAGCTTTTTCTGTTTTATGACTCTGTACATGTTTGTCATATTATGATTTGTCCTTTATTAAGTTACCCTGTTGAAGAACATTTAAGTTCGGGATGGCTCTTTTTGGACAGGTTTACAGCTGTTTTGAAATGATATTTATCTAAAGTTTTAACTATTTAGTCATCAGGTCCATTTGGTGCTATTGATATCTCCCTTTATCTCTGGCAATCTATCTAAACTGATTACTTGCCGCTTATCTACTTCTTTTTAACTTTGTAG PhaseCut65: +Start +End FragmentLength FragmentNumber 9229 9277 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 9227 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 9251 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 9253 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G33012 11003 LOC_OS03G33012.1-3 osa-miR1436 9220 9240 LOC_OS03G33012 11003 LOC_OS03G33012.1-3 osa-miR1436 9220 9240 PhaseCut88: +Start +End FragmentLength FragmentNumber 9234 9297 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 9232 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 9253 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 9255 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAGATAGATAT 9276 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G33012 11003 LOC_OS03G33012.1-3 osa-miR1436 9220 9240 LOC_OS03G33012 11003 LOC_OS03G33012.1-3 osa-miR1436 9220 9240 >LOC_OS03G37140.1-2 GTAAGAGCAAGCAACGCTTTTCTCGCCATGCACCTCCCCTAATTTATTTCTCTCTAAATTAGGTCCTCTTCATTGGGAAAAAAAAGTCTGTCATCGAAAAAAAAGAGAGAAGAAATTGGTCTTGTAACTTAGGGTGTGTTTAGTTCGTGAAAAGAAAATTTTTGGGTGTTACGTCAGACGTTTGACCGGATATCGACATTAATGAAAAAACTAATTTCATAACTCACCTGAAAACCGTGAGACGAATTTATTAAGCCTAATTAATCCGTTATTAGCACATGTGGGTTACTGCAGCACTTATGGATAATCATGGACTAATTAGGCTCAAAAGATCCGTCTCGTGATTTCTATGCAAACTGTGCAATTAGTTTTTTTATCTATATTTAATGCTCTATACATGTGTCCAAAGATTCGATGGGATGTTTTTGGGAAAAAAATTTTGGGAACTAAACAAGGCCTTATTTGGGCTCGATTTCGAATTTGACTTTACACATGGACGAATGCTTCGCTTTTTGCAAGGTCCACCATAGTTCTGTTGCTTAGCTGACGTGTTTGGGGTTGGTACCTGTGACGTATGGGTGATTCCATCACTTGGCAGTTATTATTTGGACACATTCAGTGGCCATTGACCCAAAAGAAATTTTAGAGCCCGGACAAATCGAACTACATATTAAGTGTGTTTGCTATGAAAAAACACTACTCCCTCTGTTTCATATTGTAAGACTTTCTAGCATTGCTCATATTCATATAGATGTTAATGAATCTAGGCATATATGTGTCTAGATTCATTAACTTCTATATGAATATGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTATTATTAATCTCTATGACAACGTCGAAATTCCATTGCGCATTTGACGCCAATGGGCACACCAAACACTATTTTTTGTGCTCGTGTAAGGGGAGCTTTAATGCGCATGTGGCTGCGTGGGGATGCGCCCGCACGCGTGGCTTTCGACCCTTTAGTCTCTTCCTCTTTCCTTTTCCCTCTTTTTACGTATAAAGTATATGCATACGTATATATAAAATATGTATATATATAATTTATGTATACATATTACATTTTTTATGTTTAAAAAAATATACACATATACAAACTTTGTATACATATGTATACAATACATATAAAGTTTGTATACCTACATATTAAAAAACTGAAAAAAAAACACGAGAGAAACGAAAAAACATGTATACAAGTTTGTATACGTACATACTAAAAAACGAGAGAAAAATAAAAAAAATGGAAAACCGGAAAGAAACTGAGAAAACCGGGAAAAAACCAAAAAAGGGCACGTGGCCCCTTCCCACCGCGCGGTTCAGCTGCCCCATCTCTGCGGCAAGCCACGTGGTTGTGCCGCGCGGGAGAGGGCGCGCGCAGCCAACCGCCAATTAGCCTTTTCACTCGTGAAACGCTTGGTTTAATTGCTTGGATGTGTATCGGGCCTGGGGCCTATGGCGTATGGGTGCTTCCCTCGTGAAACGCTTGGTTTAATTGCTTGGATGCGTATCGGGCCTGGGGCCTATGGTGTATGGGTGCTTCCCTCACTTGATAGTTACTTCCTCTCATTTTAATTAATTGACATCTTTGACTTTACTATTTAAACTTTGACCACTAATTACTCATAAATGGTTAGACTAAAGTGAATGAAAATTTCATGCTTATATTTTGGATATAATACATTTTAAGAACATGACATCATTTTTAGTGTTTGTAGATATCTTGTGAATTGGATTGGTCCTAGTGAGAAAGTGAATAGTGCCTGCTGTCCATTATTTAAAAATGGAAGGAATATTATTTGGGCGCTTCCAGTGGCCGTTTACCAAATTTTTTTTTAGAGCCTGAGCAAATCAAACTACATTACTGTTTGCTATGAAAATCGCTATTAATAATCCCTACGATAACACCGAAGCTCCATCGTGCATTTGATGCTACTGGGAACACCAAGTGCATGTCCCAAGCATGGCTGGTGAAACGCTTGCTTCAAGTGCTTGGGTGTGTTCTGTTACTTATGGTTGGACAATTCAATATCATGAACTTCTAGAAGTTTGACTAGGAGATACTGTTTGGAGCTCCACATTTGAAAATGAATGCTTTAGTGGTGCACACGATGCACTCTGTAACTTTCAGAAATTAAGCTTGAAACTGCACTATTTCCACCACTGTTATTCTGGCATGGATGTGGGTGTTAAATCTGACTTGGATCTGACTCTCTGGTTTGGCACATATTCTGCGAACATGACAAATACTTGTACGTGGATACAGGTGATGTTCTGCTCAGATTCTTGCAAAATAAATATCTGAGTAATCTCAAGGTTTCACAAGAAGTGTCCCCCAATACCAACTTATTCCAGCTAGCTATATCCTTGCAGTTGTAAAGTGGTTGCCATATAAATCCTCATCATCATGTGTTATCGATGAGGACAACACTTGGGAGTAAATTGGTTTCTTTGTGGTGAACTATTCTCTGTACCACATGTAATAGATGAGAAAAACATTTGGGTTGATTTATCTTTCTATTGAATTTTTCAATATGCTAGGTTCCAGAAAAATAATCCAGTACAATCATTTAGCTTTCTCTAAACTCCTAGGTTTTTAGAGTTGCGAGACTTCAAATTACAATTTACTAAACAGAGTACTTAGCAGAGTAACATACTGGTAGTTCTGAAATTTTTCTGTGCTGTTTAATACGTCTTGTAACTTTTAACTGAATATTTCTTATTCTTGACAG PhaseCut110: +Start +End FragmentLength FragmentNumber 1530 1578 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATAGATGTTAATGAATCTAGGC 1530 + 45.23 16.82 34.53 12.21 11.17 0 0 0 11.01 0.99 0 GCATATATGTGTCTAGATTCATTA 1552 - 0 0 0 0 0 0 0 0 0 0 0 ATATATGTGTCTAGATTCATTAAC 1554 + 0.2 0 0.87 0 0.25 0 0 0 0 0 0.7 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G37140 8998 LOC_OS03G37140.1-2 osa-miR446 1515 1538 >LOC_OS03G40070.1-2 GTCAATAAAATCACCATTGCTCCCACCACCATCCCCTCGCCTTTCTGCAGACTGCACACGAATATTACAGTTACAGTATCACTCCATGAAGATTCAGATAATTTCTGATTATCTTTAGCTCATCGCTAATTTCTCGCTCTGATTATCTTCTCGTAAAATAAAGTTCTTTCTCTGAATTTTATTTTAATACTATCGGTAAATCAGCAATAAAATTCAGGTCAACTCCACTGTTTTGTTCCTTGCTCTGATGATCTGTTCGGAAATGGTAGAAAGAAGACCCTCTTCTCCAAGATTGCGTCACATTTCTTAGACCGAATCGAATACAATTGGCGTGATTACTACGTATGATTGATTTTATTAGTAGAGACAACTGGCACTACATGAGTTCAGGTGTGTGTTGCATGAATGGAAATAGTTGAGTATCACACGTATTGTGTGCACCACTTAGCTTAGGAGAACTTCTATAAGGGTGCGTTTGGTTGCAAGGATGGAATAGGATGGGATGGGACGAACCCACTTTTGAGGTTGTTTGGTTGAGCGGTGAGTGGGATGGGTTGGTCCCTGGAGAGGAATATTCCTCTCAGATCCGGGACCAACCGATCCGGCAAATTCTGGCGGACGAACTCGTCCCAGTTGGGATGAGCGAACGGCGTGACCCGCTCGAGCTCGAGGCCAGCCTGCGCGCTCGCCCTACTCGCCCTCAGGAGCAGCGGTAGACACCGGTGGGCTCGACGACAGCGACCGTGGCCGCGGCGGGCTCAGCGACGTCGACGGCGACCGCAGCGGGCTCAGCGATGGCAGCCGCGGTGGGCTCGGCGACGGCGACCACGGCCGTGGGAGGGCTCGGCTCGGTGACCGCGGGGGACTGGACGACGGTGACCGGTGGGGGCTCAGCGACGGCGACCGCGGGGGGCTCAGCAACGGCGACGGAGGATCTAGTAGTGGGAAGGGCGGTGGAGGCGGATCCGCGTCCTCTGCCTGCTCGCCGCCGGCCTGCTCCTCCAACCGCACCCCTGCTCGCCCGTCCGTGCTCCTCCTCTGTTCGTCCGCCTGCTCGCAATATTGCGCCGCTCCTCCTCCTCGCCGCCGGCCTGCTCCTCCAACCGCACCCCTGCTCGCCCGTCCGTGCTCCTCCTCTGTTCGTCCGCCTGCTCGCAATATTGCGCCGCTCCTCCTCCTCGCCGCCAGCCATCGTCGCACCTCCGCTCGCTCTCCTCTTTCTCGCTGACGGTGATAGCAAATGGCGCCCATCCCATCTCTAGCTCATCCCTTCAACCAAACAAAAAATTGGGATTGTCCTATCCTACAAACCAAACACGTAAATGGAATCATCCCAACCCCAAAATCAGGAATGGTTTCATCCCATCCTACCTAGTCCCAAAACCAAACACACGCTAAGTTTTGTTTTCCCTTAGTTTTGAGACCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATTTATCTAGATTCATTAATATCAATATGAATGTATATATGTCTAGATTCATTAATATCAATATGAATGTGGAAAATGTTAGAATAACTTACATTGTGAAACGGAGGAAGTACTTTTTAAGACCTGGAATTAAGTATATCCATTTGGACGCTGGATTTCTATCCATAATCTTAAAAAGAATGAAATTTACTATGCATTACTTTCTTTATTAAAAAAAGAATAAGAATTTACTATGCTTAGATGCCTTACTTGATTATATGGTGATAACTAGTCACTTGTCAG PhaseCut128: +Start +End FragmentLength FragmentNumber 1995 2091 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1993 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2017 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2019 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 2041 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TTATCTAGATTCATTAATATCAAT 2065 - 0 0 0 0 0.25 0 0 0 0 0 0.23 ATCTAGATTCATTAATATCAATAT 2067 + 0.2 0 0 0.2 1.49 0 0 0 2.2 2.3 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G40070 3947 LOC_OS03G40070.1-2 osa-miR1436 1986 2006 LOC_OS03G40070 3947 LOC_OS03G40070.1-2 osa-miR1436 1986 2006 PhaseCut151: +Start +End FragmentLength FragmentNumber 2000 2084 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1998 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 2019 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 2021 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 2040 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATTTATCTAGATTCATTAA 2061 - 0.2 0 0 0.41 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G40070 3947 LOC_OS03G40070.1-2 osa-miR1436 1986 2006 LOC_OS03G40070 3947 LOC_OS03G40070.1-2 osa-miR1436 1986 2006 >LOC_OS03G42220.1-1 GTAATTGGCCTCTTGACTCCTCCCTTGCTCCCTAAACCCTAGTCGACCTCCCCCTCCGTCCCCTCGCCCTCCTCGACTCCCGCTCTCCTCTCGAGTTCGTCCGCCGCCCGCCGCCCGTCGATCTCCATCCCGCCGCGAGAGTAGCGGCGCCGGCGTCTTCCGCCCGGTGATCGCCCGTACGCGCATCCTCTTTCCCATTCCCTCTCTACTCGCGCTTTCATCTTTGCCTCAACCTGATTTCTCTCCTAGATCTGGAAGCTTTTCTCTCTGGCCTAAATCTTAGTACTGGGGTTCAGCCTAAACCCTTTGCCCCGCGGTTGGGGTTGGACTTGGTCCCCCTCTTCCTTGATGAGCGCATTACCTGTCGGGGAACAAGAACGCAGCTCGTAATCCTAGGGAAAGTGCGCTATTTAGTTTACGGTTGATTGATTGGAACTTGCCTGTTCTGTTAACAATAGATGAACTCAGTAATTCAACTTGCAATGGACAAAAGGCGAGTGTAGTCACTATTGTCTGCTTCTGGTAGTGCAAATTATGTACTCCCTCTGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGGGGAAGTACTGATTATTATTTATTCTCAAATATTTGCAAAGTGTCTTGGACTCTTGGTATTGGAGTAATATGTGTGTACCAGTTATTTCTGATTTTGTTATTTATGTCACCGCACTCAACAGGACCAGGAGCAGAATAGGTTTGGCGCTGAAATTTGGAGTACAATGTTAAGTTTTAATTTCTCCTAGTTTCAATATCCATCTAGCTAAGGACTGTACTTTGTACATACTCCTACGTGGTGGTTCTCTGGTTTCAAAACCCCTCTTGTGGCCTCTTATCCATCCTGTTTATATCTACCTAGGTAAGGACTGCTGAGCATTGAGATCAGCCTAGGCATATTGCAAAGGCCAGACCATGGGATGCTCTGTCCTGCTCCCATATCATCCCTAGGAGCAAATGTAATGAAAATATCTGTTATGGGCTTACCCATAACAACTGTCCACTCCCACTCTCTAGTTCCAGGCCTGGCGCTGGTGCCCACACCCTAATCAAGCTATGCAAAAGTCACTCTGAATCTCTTTCGCCTCTGCTCTCTTGTCATGGAAACCACCTCATCAGTGTGATATCCAATCTGCATTTACTTCTATTGTTTCTGCGTGCTTTGTATGTTTCAGTACCTCAGAGTGTCACAATCTTGAGTTTTTTCTGTCTTTAG PhaseCut57: +Start +End FragmentLength FragmentNumber 773 899 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 771 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 792 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 794 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 813 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 834 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATGAATGTGGGAAA 855 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 857 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 CTAGAATGACTTACATTGTGA 878 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G42220 5251 LOC_OS03G42220.1-1 osa-miR1436 759 779 LOC_OS03G42220 5251 LOC_OS03G42220.1-1 osa-miR1436 759 779 >LOC_OS03G42220.2-1 GTAATTGGCCTCTTGACTCCTCCCTTGCTCCCTAAACCCTAGTCGACCTCCCCCTCCGTCCCCTCGCCCTCCTCGACTCCCGCTCTCCTCTCGAGTTCGTCCGCCGCCCGCCGCCCGTCGATCTCCATCCCGCCGCGAGAGTAGCGGCGCCGGCGTCTTCCGCCCGGTGATCGCCCGTACGCGCATCCTCTTTCCCATTCCCTCTCTACTCGCGCTTTCATCTTTGCCTCAACCTGATTTCTCTCCTAGATCTGGAAGCTTTTCTCTCTGGCCTAAATCTTAGTACTGGGGTTCAGCCTAAACCCTTTGCCCCGCGGTTGGGGTTGGACTTGGTCCCCCTCTTCCTTGATGAGCGCATTACCTGTCGGGGAACAAGAACGCAGCTCGTAATCCTAGGGAAAGTGCGCTATTTAGTTTACGGTTGATTGATTGGAACTTGCCTGTTCTGTTAACAATAGATGAACTCAGTAATTCAACTTGCAATGGACAAAAGGCGAGTGTAGTCACTATTGTCTGCTTCTGGTAGTGCAAATTATGTACTCCCTCTGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGGGGAAGTACTGATTATTATTTATTCTCAAATATTTGCAAAGTGTCTTGGACTCTTGGTATTGGAGTAATATGTGTGTACCAGTTATTTCTGATTTTGTTATTTATGTCACCGCACTCAACAGGACCAGGAGCAGAATAGGTTTGGCGCTGAAATTTGGAGTACAATGTTAAGTTTTAATTTCTCCTAGTTTCAATATCCATCTAGCTAAGGACTGTACTTTGTACATACTCCTACGTGGTGGTTCTCTGGTTTCAAAACCCCTCTTGTGGCCTCTTATCCATCCTGTTTATATCTACCTAGGTAAGGACTGCTGAGCATTGAGATCAGCCTAGGCATATTGCAAAGGCCAGACCATGGGATGCTCTGTCCTGCTCCCATATCATCCCTAGGAGCAAATGTAATGAAAATATCTGTTATGGGCTTACCCATAACAACTGTCCACTCCCACTCTCTAGTTCCAGGCCTGGCGCTGGTGCCCACACCCTAATCAAGCTATGCAAAAGTCACTCTGAATCTCTTTCGCCTCTGCTCTCTTGTCATGGAAACCACCTCATCAGTGTGATATCCAATCTGCATTTACTTCTATTGTTTCTGCGTGCTTTGTATGTTTCAGTACCTCAGAGTGTCACAATCTTGAGTTTTTTCTGTCTTTAG PhaseCut57: +Start +End FragmentLength FragmentNumber 773 899 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 771 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 792 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 794 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 813 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 834 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATGAATGTGGGAAA 855 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 857 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 CTAGAATGACTTACATTGTGA 878 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G42220 5251 LOC_OS03G42220.2-1 osa-miR1436 759 779 LOC_OS03G42220 5251 LOC_OS03G42220.2-1 osa-miR1436 759 779 >LOC_OS03G42790.1-3 GTGAGTTGTGCCCAATGTTCATCTCTTGAATGATGCTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCATATTAATATTGATGTTAATGAATCTAGATAGATATATATATATCTATCTAGATTCATTAACATCAATATTAATATGGAAAATGCTAGAATGACCTACATTGTGAAACGGAGAGAGTACTATGTTATTTTAAAAATGTATGACACGTTAGAATTTTCCGCACAACGTTTGATCATTTGTTTTATTCAATAATTTAGTATAAACATATAAAACTAATCGATGACAAAAGAAGTCAGAACAAAATAAATGATATTTATATAATTTTTAAATAAGATAGATAGTCAAATATTATGTGAAAAATTAAATCCGTCGTATATATATTTTTGAACGAAGCATTTCATTTTTCGCATAATGTTTTACCATCTATCTTATTTGATTTTTCGGATATATATTTTTGAAATGGGGGAGTATTTGTTGGTAGTAAATGAGAAAGATTTGATGATCTTTTTTTTTTTGCAATTTTGTTCGATCAG PhaseCut28: +Start +End FragmentLength FragmentNumber 1518 1614 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1516 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCATATTAATATTGAT 1540 - 0.39 0 0.22 0 0 0 0 0 0.73 0 0 TAATGAATCTAGATAGATATATAT 1566 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATATATCTATCTAGATTCATTAAC 1588 - 2.17 0 0.22 0 3.23 0 0 0 0 4.93 0.7 ATATCTATCTAGATTCATTAACAT 1590 + 2.76 1.33 2.19 0.2 14.89 0 0 0 8.44 1.64 15.2 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G42790 3526 LOC_OS03G42790.1-3 osa-miR1436 1509 1529 LOC_OS03G42790 3526 LOC_OS03G42790.1-3 osa-miR1436 1509 1529 >LOC_OS03G43850.1-12 GTTTGCTTGATTGTACCTGTGCTGTTCTTTGTTTTACCCGTGTAGACGTCAACCTGGTACAACCAACAAAAATTGAACTCACCAGTTGACACTGCTTTAAATCTCTAAAGTTGGGAGGTCTCAGTTATCTGTTCATGGTGTAACCATTTTTAAACATGCACATCATCATTTATACTCCCTCCTTCCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAGTAATTACTTAAATTTTTTAAATAAGACGAACAGTCAAACATTTTTAAAAAAGTCAACAGCGTCAAACATTTTGGGATGGAGGTAGTATGTTGTAGACCACCCAACACTAGGATAGGGAGTAGGCTTCTTTCCTTTACACAGATGATATATAGGTAAAAGGTGGATTTTTTTTTCCCACCAAAAGAAATCGTTTAATAACAAAGTGGCCTTTTAGAGTACTTATGTCAGTTGACTGAATACTTTCAATTGTATTCGATTCTTTTTCATGCTTGTGCTTTGACACACCTGTAG PhaseCut120: +Start +End FragmentLength FragmentNumber 4288 4360 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 4288 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 4310 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 4334 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 4336 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G43850 5080 LOC_OS03G43850.1-12 osa-miR2123c 4277 4298 LOC_OS03G43850 5080 LOC_OS03G43850.1-12 osa-miR2123b 4277 4298 LOC_OS03G43850 5080 LOC_OS03G43850.1-12 osa-miR2123a 4277 4298 >LOC_OS03G43890.1-4 GTAAATTTCCAGTAATCCAATGTTAATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTCCCCACATTCATATTGATGTTAATGAATCTAGAGATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAACTTTTTTGTTTAACACTGCTTCCTCTTTACCTGCCAAAATAACTTTTATCAAAGTATAGCGCACCTGTTTCACTTTGTTGTTCATGCTTTGCCTTTTGTTATCATTACTGGTTTTAAACTTGTAAATATTTCATAATCAG PhaseCut26: +Start +End FragmentLength FragmentNumber 6730 6778 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 6728 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTCCCCACATTCATATTGAT 6752 - 0 0 0 0 0 0 0 0 0.37 0.16 0.47 CATTCCCCACATTCATATTGATGT 6754 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G43890 8213 LOC_OS03G43890.1-4 osa-miR1436 6721 6741 LOC_OS03G43890 8213 LOC_OS03G43890.1-4 osa-miR1436 6721 6741 >LOC_OS03G57690.1-4 GTATGTACTTAAACACTTTGAATATAATAGATACAGAAGTTATAGTCTCCTGAACTCATGACTTAATTAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGTATTTTCCATATTCATATTAATGCTAATGAATCTAGATAGATATATATGTCTAGATTCATTACCATCAATATGGATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAATTAGTTTAGTAGTAGAACAATTTTGATGCGCATTATCTATTGAACAGCAGGTGCTAAGAAAGAAAGGAGTAACCAAGATCGTAGAAGATTATTATAGTCAGAGTTCCTGACAACTTTACGAGAGATACTTACACCCGATTTCTATTTTTTTGTTACAG PhaseCut15: +Start +End FragmentLength FragmentNumber 3653 3725 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3651 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGTATTTTCCATATTCATATTAAT 3675 - 0 0 0 0 0 0 0 0 0 0 0 GCTAATGAATCTAGATAGATATAT 3699 - 0.59 0 0.44 0 0.5 0 0 0 0 0.16 0.47 TAATGAATCTAGATAGATATATAT 3701 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G57690 6701 LOC_OS03G57690.1-4 osa-miR1436 3644 3664 >LOC_OS03G61210.1-2 GTAAGTCAATCTTATAATCTTGCCCCTTAATGTGAACTAACTGTTCTTTTGGATTGTGGTTCCTGTTTTCTGCTCACTTGTTGGGAGCTGAACATGTAATCTTGTATCTCCAATGATCTTAAAGTTATGTTGTAGACACTAGACAAGCAGCAAATATAAGAACTGCCATAAAAACTTTCTTTTGGCATTCTCTAATTGCCAATGGGCACAACTTTTCTTTTGTTGCCACACGTTAGTATGATTTGACATCTGTGCCAGCATTGTTGATATTGCTGGTGCACCATGTCACATTCTAGCTCTGATGCACTTCTTTTGCTATCACCTGATTTATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGAAAATGTTAGAATGACTTACATTGCGAAACGGAGGAAGTATATACTAGCAATATCATCATGACAACATTGGTACACTGCCCATGTCTTCATATGTGTTGTGTTTACGTTTAGCTACTGTGTTGATAAGCCTCAGCAATCACTAGTGTAGAGAAGATCTATTATGCCATTTGCGCCACATCACATGCATTCATATTTCTAGATGTCGTTTTAATCCATCAGCCCATGAACCATGATTTCAGATGTTAAATACACTTGATATATGAAGACTATTGTCACTGTTAATCTTGAGTGTCTTACTAAGACCAACAACACACATGAAGAAAACAAGGGGGAGAAAGCGCATTGAATGATCACCACTTCTATATAACTACAAAATCATCATAATCTGACACAGTATGCTAATAAGTTATTGTAATGGAAATGCTAATAAGTTATTGTAATGGACATGGCCTTCATTCTTACAGAACTGCTGGTTTATAAATTCTATGAATAATTTGATGCCATGACCAAGGATATGATTCTATTGCTGTTTTCTTGTCTGTGCTTGTTAAGGGCGTAAGGCACATAGCCTCCTATCAATGTTTTATGCGATCGTCGATACTTTTTTTTTCCACGTTTTGAATTTTTTTTACTGCACTTGTGTTTTAGGATCTGAACCAATAAATGCATATCCGACTAATGTTAAAATCTCTCTGATTGTTTTTCAG PhaseCut28: +Start +End FragmentLength FragmentNumber 1355 1403 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1353 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 1377 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 1379 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G61210 3767 LOC_OS03G61210.1-2 osa-miR1436 1347 1367 PhaseCut29: +Start +End FragmentLength FragmentNumber 1356 1404 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1354 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1378 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1380 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G61210 3767 LOC_OS03G61210.1-2 osa-miR1436 1347 1367 PhaseCut33: +Start +End FragmentLength FragmentNumber 1360 1408 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 1358 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 1382 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 1384 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G61210 3767 LOC_OS03G61210.1-2 osa-miR1436 1347 1367 PhaseCut35: +Start +End FragmentLength FragmentNumber 1361 1403 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1359 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1380 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1382 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS03G61210 3767 LOC_OS03G61210.1-2 osa-miR1436 1347 1367 >LOC_OS04G01530.2-8 GTAAATCGGCTGTTTGACATGTGAAATCTTTGCGACATAATTTTTTAAGGCACCACATATATGGTGGATCTGGGTGTATGCATTGCATTTTACACTGTGCGTGCTCCTCCTGGAGGGACTGCATTCTTAGAGCAGGTTTAATAGTATAGCCAGCAACGGGCTACAGAAACTCCAACTCAGCAAAAAAAAATATTTTCTCACAGTCTATTCTCTCTCATTGAGGGCATTGGGAAGCGTGCAAATGGTGGGAAAAGTTTGCATCTGCAGCATGCATGGACGACGATTGGTCATGATGCTTTTTCTACAGCTGCAGCCCGGCGATAGATTAAGCGCCGGCTACTCTCTCTCTCCTGTTTTCTCACTCTTCCATGTAGGATTTATCTTAGATGAATAGTACTACCGCCTGCTGACTGTAACCTATTATACCTGCTCTTATGCTACCCAATTGCTTATTGGTTATTCTCTAGTACCAAACTGGCTCTGTATGCTTGCCAGTTGCCGTGTACTTAGGATATTTTAATCCTACGAGTCAAACTACTCTCTATATGCCTCCTTGTTTACAGGTCAATAAATTGAGAGATGCTACCAAGTTGTTTTCAAGCAACATTTTGTCATATATTAAAGCTCTCAATTATGTCTAGGCTGATGGGGTGGGGGATGGACCATACAAATTGTTGCTTGTAGGTAGAAAGAGCTCGACTTTTATGATTCTGTGCCTTTTGTGTTGATCCTTTTCAATAAGACATGCTCACAAGCAAAAATGAACAAACCACAAATATCTTCACTCTTTTGGTCCTGATGGCAACATCAGCATAAGAAAAGGACTAGGTGCTACTTTATGTTTTTGTTGACTCATTGAACTTCTGCTTAAAGCTAAATCATTGACTCATGTAATTAATAACAGTAACACTTGCAGGCCCCAACTTCAGAATACAGGGACAATTTGCTATTATAATATAAAGACAAGTTCCAATCATTTGGCAAACATGTACTCCCTCCGTTTCAAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCATTCGTCTTATTCAAAAAAAATTTGTGAAATATGTGAAACTATATGTGTACATGAAAGTATATTTAACAATGAATCAAATGATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACGTACTTAAAAAGTCAGCGATGTCAAATATTTTGAAATGGAGGGAGTAGCACGAATCTCCTATGTAGCTTGCTAAGTTTCAGCAGGGGAAAAAATCATTTTGATGTAAATATTAGCTTGAGCATATCCTGAACCAAAGCCATGAACAACAGAAGTTTGCTCTTTTCTGCAG PhaseCut88: +Start +End FragmentLength FragmentNumber 3826 3872 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 3824 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TGACCATTCGTCTTATTCAAAAA 3847 - 1.18 0 0 0 0.5 0 0 0 0 0 0 ACCATTCGTCTTATTCAAAAAAA 3849 + 0 0 0 0 0 0 0 0 0.37 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G01530 4559 LOC_OS04G01530.2-8 osa-miR2123c 3816 3837 LOC_OS04G01530 4559 LOC_OS04G01530.2-8 osa-miR2123b 3816 3837 LOC_OS04G01530 4559 LOC_OS04G01530.2-8 osa-miR2123a 3816 3837 >LOC_OS04G10060.1-1 GTATATGAGATCAAACTCCCTCCTGGCTTACCTTGGTTTGTTGGATGGAGTCATGGAGTCATGGGGTCCTATTTAGCGCGCGGGTCTAGATTCTTGAATCACGTTGTCTTAATTTTATATGTTCAATTATATATGGCGGATCTAGATATTTGTTCAAAAATAGACTCGGTGAAAGGAACCACCCCAACTTTTAGTTTGCTTTGTTTTGTTTTCTCGATTTATATCCAAACGTTATTATACTTGTATAAGTCATAATTTCTACTCTATAGATGCCAAAATATAGTAATTTCTTGGGTTTAATTTTATCCCAAATATAATAACTTAAATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATAGTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAATATCACTATGAATATGGGAAATGCTATAATGACTTACATTGTGAAACGGAGGAAGTATGTAATAGACGTCTTTTTAACACTGAACAACACATACCATCCTTGACTTTTATTATCAAGCCAACTATAACCTGGGGTCCCGCACATCGAGAAGGTAAACAAGTATTTTTACCTATCCTTAATAGTCATGTCAAGGATTAAAAATGTTATATTTTAGGACAAAAGAAGTATTTTTCTACTAATAAGACATTACACAAAGCATAATTTCTTTAACTTGCTCCATTAAAAAAAACATAAGGGTGAGTTGTCGATTTATTGATAAAGTGTTCAAAATGTTGACTGATGTATAAGAAAAAACCATTCACTTTAATTGAATACATAGCCACAATAAATTATTAATTATTGTACTTTAGGCATCAACTAGAAGCACGTGATGAATTTCCCAACTATGAGTTGGGTTTCTTCTAGCCTGAACCTTCATAGCTTTTGGTCCCACAATATTTTGATGGCTATATATATTTTAATAAAAATTAAAATTTCTTACAGTCTATGAGTAGTATGGGTACAAAGAAGATAGACGGTGGTTAATTACCCGGTGGACCAATACCTAAAATTCTCGTTTTCTGAAAGTTACTTTTTCAATGAAATGAAATTTACTGTTGTACAGTTAATATGGGTGCTGAATATTTGTGGTTTAAGAGTAGTGCCATACTGATCATTGTAACATAAATCTTCATCTGTTGAAACAG PhaseCut30: +Start +End FragmentLength FragmentNumber 642 714 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 640 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATAGTGAT 664 - 0 0 0 0.2 0.25 0 0 0 0.73 0 0 GTTAATGAATCTAGACATATATAT 688 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 690 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G10060 5691 LOC_OS04G10060.1-1 osa-miR1436 633 653 LOC_OS04G10060 5691 LOC_OS04G10060.1-1 osa-miR1436 633 653 >LOC_OS04G18010.1-23 GTGAGTATTGAATAGCTTTTGGTTCAATTAATATGCTTTTAGGTTTTGAGCACGTAACTTTTGGTTTAGTTCCTGTTTTCTGTTCTCTAGGCATCATTTTTCCTCGAAAGTCCATGCATAATGCTGATAGGAACAATTAAATAGAAAGAAATAATGCATTAATTGTTTCTTCATACACAAGGCTATGTAAATAGTGGTTCCCTGAATCTGGCCTTACCTGATGTTTTAGCTTTGGAGTTTTGAGCCAACCCTGACTTCTATTGTGGAGGTTAGTATAATTGGAGCTTAATGCCTATGAGCCAGCTGGGACTTTGGATTTTCCAGTGTTCATGCATTGTACTGACTACAACTTCTTTTCTCATAACAAAGATGTACGACACAGCCACTAACTGTTCTTATTGCATGTTACAAACATAACATTAATTATATAGTGTTCCATCAGGTCATGAAAAGTTGTTTTGGATGTACGTCATGTCATCATCAATATCTTCTATAATATCTAGTTGGGGAACATAAAATTCATGTGTGTATTTGTCTTGAAAATTAGTTTCATAATATTAAAATTTATTGGGGTTATACATTAGTGGTTAAAGTTACATTTTTCTGACTGGATTTTTAAAATGACATGTTTTCCTGACCAGAAAATATTTCCCCAGCCAGAACAGTAAAACAACCAAAAAAATGTGGAGAAAATGATTAAAGTAATATTTTGATATTTTAACAATTGATATTACAGATGAATTTTTTTTTTGTGTATTTAGCTAAATGTTTTTTGCATAGTAAAAACATAGTGTGGAGTTAAAAATAAAGTAGTTACCATACTTTTGAGTTGAAGTGATATCCCTCTTACTGTTTTTTAAAAGGAGTAGGAACTGCATACTCGACCACAGGAATGACATCATCAATAGTACTACACCAAACCAAAATATCCGTCAAATGTGTGCACCATTTGGTTTCTCTCAAACTCAAGTTCTGGGAACCTGAAAACTGTTCCCTTTGATCATAACAAGAAACCTGTGCTAGCCAGTGTTAATATAGACTATAATGTATTTTTTTTATTACTAGCTAATCTGCTCATATGTTGCCATGGAATCTTAAAAAGAGAACCTTTGTCATACTACCTCAGTCCAAACTCTAAAAGTTTAGCTAAATTTAGCTATTATTATCTGGAGGGAGTACATTTTAAAGCATAAAATTGTTTAACTGTTTTAGTCAATTTTTGCCATCAGTTTCTAAATACATGCTGAGCTAGGCAGGGGCACAGAGCACTGTTGCTTCATGATGAAAAACTGACGCAAGTCTTTTTTTCATTCACTTTCTGGATGCCTGCTGAATTAATCATCTTCTCTATTTAATGTGAATTCATGTTATTTAGGTGCAATACAGGTCAGTACAATTCTGCTTGTGAGGGCAAAAAGACACAAACATATGCACATTGCATAATAAGTTATGACAATTCAGTCCTTAATAAATTGATTTCTATCAATACAGCACTGCTGTGATATCAGGCAGGCCGGCTACACTCTCGTACACCAGCAGGAAAGGCCTGGCCCATTTACAACTTGCTAACCTTAACTCCCATTTACACCTGCCAGCGGCCTGCAGCTTGCACCATTCGTTGCGTCCTCTCCTCCCTCTATGAGCTGGACCACGCCATGCTTCCTCCCTTCTCCAACGTTGCCACTCCTATCTCCTCCATTCTCAAGCGCCATCGGCGCCAGCCCCTGGCCCTCTCCAGCACCACCTGCCTCCAGTCCCTTCTTTGGCGAGTCTATCTAGCAGGGTCACGTCTGCAATTCTGTCCCCTTCCCCTAGTACGATTTATTCCCGTCCCCTTCCTCTCCCTCTAGCAAGTGAACCGGCAGCGCCGAGCCCGGGACCACCAGATCCGCTCAACCTGAGCGCTATGGTGCTCTTTGAGCAGCAGCAGCAACAAAACAGCCAACAAGCGGTGCGTTGTGGTGGAATTGACCATGGCGGAAGGATTCAAGCATTGGCGAAGCACGCTCAGCTACCGTGCTGCCCCGCCAAATTGACAAACAGTGGTGAGTCTCTGCACTGCTGTACAAATACAGTGGCATCAGAAGCTGGCGCCCTGCCAGATCCAAGCATGGGCGGCACAATTCCTGTTGCGAGTTCCATGGGCAATGTCCAAGGCAAGGAGGTGAACGGGGGAGTAGGCGAGGATTCCCGTTCCCCTCCTATGGATCTGTGGTCCCCACATGTCAGAAGGTTGGTGGCAGAACCACCACCACCACCACTAACATTTAAAGTAGTATAGATTTCTTGTACTTGGTGGGTGCATTTCCAATGCTACCTTTTGCATATTTAAATTAAGAGAAAATCTATTCTATGCCATTGAGTTTGTCCTGGTTCAACAATTTGCCATTGACTACCTCTTTCTATAACATACCACTGAGCATATCAATTGTTCTACAATATTTCTTAGAAAAATGCCTTTATAGACATAAGATTAACAATCGATTTATCCCATCCGAAATTTCAAAAAATAATGATGTTGTTTTGTGTAGCCTCGTTACGCAGCATAATAGTTTGTTTATAAGTTTCAAATTTTTGCATTACTATTATTTTATAAGATATAATTTATGTGTTATATGCTACTTCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCTCACATTCATTTAGATGTTAATGAATCTAGACATATGTATGTGTTTAGATTCATTAACATCTACATATATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGGAGTACATAGAATACTTTTTTGCTGCTGTTTTTGATGTAAATCATCTACCATGTGTTACACAAAATATTTTTATAGTATTATCTTTTGTTTAAGCAATTACTCATGTACCACACAAAAGTAACTTTTTAAAAGGACGCGACTACAGGGAGCGCATGCACTCGTTAGTGCTAACCAGCGACCATCTTTTTTACCAAAATAGTACAGTGGGTATCAACTCGTTACCCTTCTTAATAGCACCTGCCACTTGCATCCTCATTGCCCATCTAAATTCCAAATAAAATTTTTCTCTTAAATTATTTGTCGGATCTACGATCCGATTACACCATTGTGCTCGTTGCAATTAAATCTGTACAACAAGATCTTACATGATTATATTATGATGAAAAAATTATTTATGTTTGTAAACTACTTTTATTATATACTAAGTTACTTTTATCATATATATAAATTACTTTTAGATTTGATTAAATTACTTCCTATACATTCATAATGCTATGAGGTGATTACTTTTATTATTATTTTAGTCAATTCCATAATTTGTGCTGATTAATTTAGTTTCTAGATAGAGTTATGTTTTTATCACTACAACGGATTTACTTCTAATGTCATGACAAAATTACTTTCTTTTTGTCTCAAGTTACTTCTATAATATATGTAAATTACTTTTAGACTTTATTGAATTTACTTTTATATGTCTAAGAAGTAATTTAGTGAAATCTAAAAGTAATTTAGATATATTATAAAAGTAATTTGTAAATTTTCATCGTAATATAATCATGTGAGATCTTATTGTAAAGATTTAATTGCAAGTTGCAACGAACACAATGGTGTAATTGGATTGTAGATCAGATAAGTAATTTGAGAGAATTTTATAAGAAGGGAAAAAAGACATGGATGCCTAACACTCCGATGCTTCTCTCAAATTGTAAACTCTGATGCTTCTCGACTAAATCGGATGGCCGCGCCAGTCGTCGCTGTGTAAGACCAGATCGAGAGGCCTCTCGTTATAGATTTTACGTTTTTAAAAATATTAAAAAAGAAAAAAGTCTTAAAACATTTACCCAAACTTCTTTGTCATGCAAGGAGACCAAACGGAAAATTTCATAATTTTTTGGAACTGCTATTGGTGTCAATCAATTGCCAACCCTTGTATGTATATAAGGGCAGTTTGGTTATTCTTTCAAAAATAGCTGGGCACACTGTAGAAACAATTGACGAACTCGGTGGCATATTGTAGAAAGGGATAAAGTCGATGGCAAATTGTTGGACCTAGGAAGTTGATAAACTCAGTGACGTAGAGTAGAGACTCTTAAATTAACTGATAGCCATGAGCCTACGGACAGAAATATTTAGTAAGTTTTTGACCCAATGAATGGTGCAATAAGCTGCAAAGGTTACAGAAAATTTGTATAATTAATTTTTAAATTTGAATTCAATGTCTGCTTGTACATTGTCTTGATTTCATGTGCTTGCAATGTTATGTATTATTTGTACATTTCAATCCATATTTAGGCTATCCTAGATTACAGGAACTCAATTTGTAATACTATTTTGCATTTCAACATGCATAAGCTGGCAATTTGCAATAATGTGCACTGCTTTCTTTAATGGTTGTGGTGTCTGAATAATCCTCTGAGATTGTTTCTGTAACAG PhaseCut55: +Start +End FragmentLength FragmentNumber 20339 20411 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 20337 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AGCATTGCTCACATTCATTTAGAT 20361 - 0 0 0.44 0 0 0 0 0 2.57 1.15 2.81 GTTAATGAATCTAGACATATGTAT 20385 - 0.2 0 0 0 0.74 0 0 0 0 0 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G18010 27480 LOC_OS04G18010.1-23 osa-miR1436 20330 20350 >LOC_OS04G32710.1-2 GTAATAATCCCACCCCCCGATCTTTTCCCCTCTTTCCTTTCCTCGACTGATGTAATGCATGCATGCATGTATGTATGTCTCCTGCTAGGATGTGGTAGGTGGGTTTCGCGGTTAGATTAGATGAATTTTCGGTTCTTGATGTTGCTGTGTGATATCTGGGCTGTGGTGAGGGTTGTGAGCGAGCATATTGAAGGGCAATGCCAATTGTGAATCCTTTTTTTTGTGCCATTGCTAACCAGTATCGAAATTCTTGTTGTGGTTAATCTTGAAGCGAGCGGTAGTTTAGTTCTATGTGTTGGTGGGTGGGTGGGCACCATTTCTTTGCGAGTATCTGACCGAATTAGCTCTGCTGTGATAGCTTTAGTGCCATTTTTTTTTGCATTTTTTAGGGACGTTGCGGAGGTGCTTAAATCCTCTTAATTTTCGCATGTTGATAGCTCGTAGACTGAGTTTCGTGGACGCATCAGTCCTGCTAAAGTTTGTAATAGCTTGCTGTTTCATGGATGCATCAGCCATGCTAAGTACTTCCTCCGTTTCACAATGTAAGTTATTATAGCATTTCCTATATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAATATCAATATGAATGTGGAAAATGCCAGAATGACTTACATTGTGAAACGGAGGGAGTATTTGCTTAGAGAGCATCAGACTAGAATTGTTCATTTGGGTCATGGAAGTATCCATATTTAACCGTGAATGTTACAGTAGCTCCAAGTTATGCATTTGTAGTGAAGTTGCTGAGTTGTCTAAATCCGCTTAATTTTTAGTGAAGTTGCCGAGTTGTCTAATTATCTAAATCCTGCATTCAGCTTGCAGGCTGGGATAGTTTCAAGGATGCATCAGTCATTCTAAAGTTTGGGATGTATTATCTTGTCTGTTTGATGATTGATGTATTGTTGGTTCTAACTTTATGACTTGCATCTTTTGCAG PhaseCut46: +Start +End FragmentLength FragmentNumber 881 977 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTGATGTTAATGAATCTAGATAG 881 + 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 AGATATATATGTCTAGATTCATTA 903 - 0.2 0 0 0 0.5 0 0 0 0 0.16 0 ATATATATGTCTAGATTCATTAAT 905 + 0 0 0.22 0.2 1.49 0 0 0 0 0 0.7 ATCAATATGAATGTGGAAAATGCC 929 + 0.2 0 0 0 0 0 0 0 0 0 0.23 AGAATGACTTACATTGTGAAACGG 953 + 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G32710 4249 LOC_OS04G32710.1-2 osa-miR446 864 887 >LOC_OS04G42600.1-5 GTATAGTGTAGTCCTTTAAGCAGCTGAGTGTTTGTAATTGAATAATTCAATTCATGACAACATGCATGCCCAAACTGCTATTCCTAGTACTATTTATGGATATGAAAATAAGATATGCCACATGAATTACTGTTCTGTTTTGCACCATCATGAACTCAATGTTTACAAGAGCAACAGTAATTTGTTTATGGTTATTGATAATCTAGGCAATTAAGTTATGATTATTGATATTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTACATTCATTAACATCAATATGAATGTGGGAAATATTAGAATGACTTACATTGTGAAACGGAGGAAGTAGGTCATTGGGTTTGGCGAAGAACTTTTAAGCATCAGTTCAGAACTCATTATTCTGTATAATAGTTGAGGGAAATACTGATATGCAGGGATGACTCACAATGCATGCTCCATAGATCTGTAGTTGAATCCTCAGAAATGTATCTTCAATTGCCTGCAGTCCACAACATATATTTAAGTTGTACGGCTGTACCATAGTTCTTACTGCTGTGTTTTGACAAAGTTTCTTAATAAATGCTTTATAATAACTCATTCTTCTTGTTGAGTTGTTTCTGATCATTTCATAATGAAAAAGAAATGCTGACGGTAGCATGTTCCATGTTATTTAG PhaseCut51: +Start +End FragmentLength FragmentNumber 3614 3662 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3612 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3636 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 3638 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 PhaseCut55: +Start +End FragmentLength FragmentNumber 3615 3759 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3613 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3637 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3639 + 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGATAGATATATAT 3663 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTACATTCATTAACATCAAT 3685 - 1.97 0.66 0.87 0.41 4.96 0 0 0 6.24 1.64 23.85 GAATGTGGGAAATATTAGAATGAC 3711 + 1.18 0 0.22 0 0.5 0 0 0 0 1.48 0.23 TTACATTGTGAAACGGAGGAAGTA 3735 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 PhaseCut81: +Start +End FragmentLength FragmentNumber 3620 3683 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3618 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3639 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3641 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAGATAGATAT 3662 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.1-5 osa-miR1436 3606 3626 >LOC_OS04G42600.2-5 GTATAGTGTAGTCCTTTAAGCAGCTGAGTGTTTGTAATTGAATAATTCAATTCATGACAACATGCATGCCCAAACTGCTATTCCTAGTACTATTTATGGATATGAAAATAAGATATGCCACATGAATTACTGTTCTGTTTTGCACCATCATGAACTCAATGTTTACAAGAGCAACAGTAATTTGTTTATGGTTATTGATAATCTAGGCAATTAAGTTATGATTATTGATATTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTACATTCATTAACATCAATATGAATGTGGGAAATATTAGAATGACTTACATTGTGAAACGGAGGAAGTAGGTCATTGGGTTTGGCGAAGAACTTTTAAGCATCAGTTCAGAACTCATTATTCTGTATAATAGTTGAGGGAAATACTGATATGCAGGGATGACTCACAATGCATGCTCCATAGATCTGTAGTTGAATCCTCAGAAATGTATCTTCAATTGCCTGCAGTCCACAACATATATTTAAGTTGTACGGCTGTACCATAGTTCTTACTGCTGTGTTTTGACAAAGTTTCTTAATAAATGCTTTATAATAACTCATTCTTCTTGTTGAGTTGTTTCTGATCATTTCATAATGAAAAAGAAATGCTGACGGTAGCATGTTCCATGTTATTTAG PhaseCut51: +Start +End FragmentLength FragmentNumber 3614 3662 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3612 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3636 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 3638 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 PhaseCut55: +Start +End FragmentLength FragmentNumber 3615 3759 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3613 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3637 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3639 + 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGATAGATATATAT 3663 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTACATTCATTAACATCAAT 3685 - 1.97 0.66 0.87 0.41 4.96 0 0 0 6.24 1.64 23.85 GAATGTGGGAAATATTAGAATGAC 3711 + 1.18 0 0.22 0 0.5 0 0 0 0 1.48 0.23 TTACATTGTGAAACGGAGGAAGTA 3735 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 PhaseCut81: +Start +End FragmentLength FragmentNumber 3620 3683 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3618 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3639 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3641 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAGATAGATAT 3662 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 LOC_OS04G42600 7248 LOC_OS04G42600.2-5 osa-miR1436 3606 3626 >LOC_OS04G43050.1-23 GTAAGTTCATCTTCTTACTGAGAGCACCCGCAATAGTAAAGTAAGGTGCTATCTATAAAACATGTACATCTCAGCAATAGGCTAGATTAATAGTAAACCACTTCAATGGTATGTCTATATGGGTATATATAACTCTCTAATCCATTGCATTGTTTTTCTCTATAGACTATTTCTAGGTTAGTAGATAGTTTTGCTCTCTCTCTTCATTTAATATCTTCCAAGTAGGAAAATATGCTGACATGGATGTCTTGTAGAGAGCCTATAGCAGGTACAATAGCAGGCTATTAGCCAGCTGTAAACATATTTGTAGCCAGCTACAGCACGGACTCTAAGACGCAATGTGTATATAATAGGTGGGACCATATATTAGTAGTATAGTAAGCAACTATTGTATGAATTGGCTATTAGATTGACTATAGATAAATTGGAGCTAATAGTGGGCTATACTATTAAACTTGCTCTAAGGGTGAAATAATAACCTTTACGTGTTACGATGAAACTTACGTCCTACCTGTACTGTTTCCTTTCCTTTGTGCAGTAATATATACATGGCCTACCCAGAGTAGTAGATGCTCATATTTAAGTTCTTTATAGTCTATCCAGAACGCAAATTAGCTTGTACATTTTATGATCAGAATTTCGATGATGCACCTTGGCTTTTAGGTTAAACATGGTGTTCTAAAATGTGGATTATACATAATGCCATTCTCATACTAAAGCTTGGTATAAGCTGGAGCAGCAATCGTTTAACTGACAAGCAGAACTATTAAGCACGATTCTGTCATATAATAATTTCTATGCCTAGGGAACTAGATGACACATGGCTTATACATTTTTTAGTAATATTGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCTTTTCCCACATTCATATTCATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACACAACTATCTCTGTTGCCACTTGCATATGTACACATGCTTGCTAACTTCCCTGGAG PhaseCut136: +Start +End FragmentLength FragmentNumber 14278 14398 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 14276 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCTTTTCCCACATTCATATTCAT 14300 - 0 0 0.44 0 0 0 0 0 0 0 0 TAATGAATCTAGATAAATATATAT 14326 + 0 0.22 0 0 0.5 0 0 0 0 0.99 0 ATGTCTAGATTCATTAACATCAAT 14348 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 GAATATGGGAAATGCTAGAATGAC 14374 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 PhaseCut138: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAG 14278 - 0.39 0.66 0.87 0.41 0.5 0 0 0 0.37 0.16 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 PhaseCut140: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCT 14280 + 0 0 0 0 0 0 0 0 0 0 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.1-23 osa-miR1436 14269 14289 >LOC_OS04G43050.2-12 GTAAGTTCATCTTCTTACTGAGAGCACCCGCAATAGTAAAGTAAGGTGCTATCTATAAAACATGTACATCTCAGCAATAGGCTAGATTAATAGTAAACCACTTCAATGGTATGTCTATATGGGTATATATAACTCTCTAATCCATTGCATTGTTTTTCTCTATAGACTATTTCTAGGTTAGTAGATAGTTTTGCTCTCTCTCTTCATTTAATATCTTCCAAGTAGGAAAATATGCTGACATGGATGTCTTGTAGAGAGCCTATAGCAGGTACAATAGCAGGCTATTAGCCAGCTGTAAACATATTTGTAGCCAGCTACAGCACGGACTCTAAGACGCAATGTGTATATAATAGGTGGGACCATATATTAGTAGTATAGTAAGCAACTATTGTATGAATTGGCTATTAGATTGACTATAGATAAATTGGAGCTAATAGTGGGCTATACTATTAAACTTGCTCTAAGGGTGAAATAATAACCTTTACGTGTTACGATGAAACTTACGTCCTACCTGTACTGTTTCCTTTCCTTTGTGCAGTAATATATACATGGCCTACCCAGAGTAGTAGATGCTCATATTTAAGTTCTTTATAGTCTATCCAGAACGCAAATTAGCTTGTACATTTTATGATCAGAATTTCGATGATGCACCTTGGCTTTTAGGTTAAACATGGTGTTCTAAAATGTGGATTATACATAATGCCATTCTCATACTAAAGCTTGGTATAAGCTGGAGCAGCAATCGTTTAACTGACAAGCAGAACTATTAAGCACGATTCTGTCATATAATAATTTCTATGCCTAGGGAACTAGATGACACATGGCTTATACATTTTTTAGTAATATTGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCTTTTCCCACATTCATATTCATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACACAACTATCTCTGTTGCCACTTGCATATGTACACATGCTTGCTAACTTCCCTGGAG PhaseCut136: +Start +End FragmentLength FragmentNumber 14278 14398 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 14276 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCTTTTCCCACATTCATATTCAT 14300 - 0 0 0.44 0 0 0 0 0 0 0 0 TAATGAATCTAGATAAATATATAT 14326 + 0 0.22 0 0 0.5 0 0 0 0 0.99 0 ATGTCTAGATTCATTAACATCAAT 14348 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 GAATATGGGAAATGCTAGAATGAC 14374 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 PhaseCut138: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAG 14278 - 0.39 0.66 0.87 0.41 0.5 0 0 0 0.37 0.16 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 PhaseCut140: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCT 14280 + 0 0 0 0 0 0 0 0 0 0 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.2-12 osa-miR1436 14269 14289 >LOC_OS04G43050.3-12 GTAAGTTCATCTTCTTACTGAGAGCACCCGCAATAGTAAAGTAAGGTGCTATCTATAAAACATGTACATCTCAGCAATAGGCTAGATTAATAGTAAACCACTTCAATGGTATGTCTATATGGGTATATATAACTCTCTAATCCATTGCATTGTTTTTCTCTATAGACTATTTCTAGGTTAGTAGATAGTTTTGCTCTCTCTCTTCATTTAATATCTTCCAAGTAGGAAAATATGCTGACATGGATGTCTTGTAGAGAGCCTATAGCAGGTACAATAGCAGGCTATTAGCCAGCTGTAAACATATTTGTAGCCAGCTACAGCACGGACTCTAAGACGCAATGTGTATATAATAGGTGGGACCATATATTAGTAGTATAGTAAGCAACTATTGTATGAATTGGCTATTAGATTGACTATAGATAAATTGGAGCTAATAGTGGGCTATACTATTAAACTTGCTCTAAGGGTGAAATAATAACCTTTACGTGTTACGATGAAACTTACGTCCTACCTGTACTGTTTCCTTTCCTTTGTGCAGTAATATATACATGGCCTACCCAGAGTAGTAGATGCTCATATTTAAGTTCTTTATAGTCTATCCAGAACGCAAATTAGCTTGTACATTTTATGATCAGAATTTCGATGATGCACCTTGGCTTTTAGGTTAAACATGGTGTTCTAAAATGTGGATTATACATAATGCCATTCTCATACTAAAGCTTGGTATAAGCTGGAGCAGCAATCGTTTAACTGACAAGCAGAACTATTAAGCACGATTCTGTCATATAATAATTTCTATGCCTAGGGAACTAGATGACACATGGCTTATACATTTTTTAGTAATATTGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCTTTTCCCACATTCATATTCATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACACAACTATCTCTGTTGCCACTTGCATATGTACACATGCTTGCTAACTTCCCTGGAGGAATGATACAG PhaseCut136: +Start +End FragmentLength FragmentNumber 14278 14398 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 14276 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCTTTTCCCACATTCATATTCAT 14300 - 0 0 0.44 0 0 0 0 0 0 0 0 TAATGAATCTAGATAAATATATAT 14326 + 0 0.22 0 0 0.5 0 0 0 0 0.99 0 ATGTCTAGATTCATTAACATCAAT 14348 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 GAATATGGGAAATGCTAGAATGAC 14374 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 PhaseCut138: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAG 14278 - 0.39 0.66 0.87 0.41 0.5 0 0 0 0.37 0.16 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 PhaseCut140: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCT 14280 + 0 0 0 0 0 0 0 0 0 0 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.3-12 osa-miR1436 14269 14289 >LOC_OS04G43050.4-10 GTAAGTTCATCTTCTTACTGAGAGCACCCGCAATAGTAAAGTAAGGTGCTATCTATAAAACATGTACATCTCAGCAATAGGCTAGATTAATAGTAAACCACTTCAATGGTATGTCTATATGGGTATATATAACTCTCTAATCCATTGCATTGTTTTTCTCTATAGACTATTTCTAGGTTAGTAGATAGTTTTGCTCTCTCTCTTCATTTAATATCTTCCAAGTAGGAAAATATGCTGACATGGATGTCTTGTAGAGAGCCTATAGCAGGTACAATAGCAGGCTATTAGCCAGCTGTAAACATATTTGTAGCCAGCTACAGCACGGACTCTAAGACGCAATGTGTATATAATAGGTGGGACCATATATTAGTAGTATAGTAAGCAACTATTGTATGAATTGGCTATTAGATTGACTATAGATAAATTGGAGCTAATAGTGGGCTATACTATTAAACTTGCTCTAAGGGTGAAATAATAACCTTTACGTGTTACGATGAAACTTACGTCCTACCTGTACTGTTTCCTTTCCTTTGTGCAGTAATATATACATGGCCTACCCAGAGTAGTAGATGCTCATATTTAAGTTCTTTATAGTCTATCCAGAACGCAAATTAGCTTGTACATTTTATGATCAGAATTTCGATGATGCACCTTGGCTTTTAGGTTAAACATGGTGTTCTAAAATGTGGATTATACATAATGCCATTCTCATACTAAAGCTTGGTATAAGCTGGAGCAGCAATCGTTTAACTGACAAGCAGAACTATTAAGCACGATTCTGTCATATAATAATTTCTATGCCTAGGGAACTAGATGACACATGGCTTATACATTTTTTAGTAATATTGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCTTTTCCCACATTCATATTCATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACACAACTATCTCTGTTGCCACTTGCATATGTACACATGCTTGCTAACTTCCCTGGAGGAATGATACAG PhaseCut136: +Start +End FragmentLength FragmentNumber 14278 14398 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 14276 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCTTTTCCCACATTCATATTCAT 14300 - 0 0 0.44 0 0 0 0 0 0 0 0 TAATGAATCTAGATAAATATATAT 14326 + 0 0.22 0 0 0.5 0 0 0 0 0.99 0 ATGTCTAGATTCATTAACATCAAT 14348 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 GAATATGGGAAATGCTAGAATGAC 14374 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 PhaseCut138: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAG 14278 - 0.39 0.66 0.87 0.41 0.5 0 0 0 0.37 0.16 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 PhaseCut140: +Start +End FragmentLength FragmentNumber 14280 14424 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCT 14280 + 0 0 0 0 0 0 0 0 0 0 0 CTTTTCCCACATTCATATTCATGT 14302 - 0 0 0 0 0 0 0 0 0 0 0 ATGAATCTAGATAAATATATATGT 14328 + 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 GTCTAGATTCATTAACATCAATAT 14350 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ATATGGGAAATGCTAGAATGACTT 14376 + 0 0 0 0.2 0.5 0 0 0 0.73 0.33 0.47 TTACATTGTGAAACGGAGGGAGTA 14398 - 0 0 0 0 0 0 0 0 0 0.16 0 ACATTGTGAAACGGAGGGAGTACA 14400 + 0 0 0.22 0 0 0 0 0 0 0 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 LOC_OS04G43050 14911 LOC_OS04G43050.4-10 osa-miR1436 14269 14289 >LOC_OS04G46450.1-6 GTAACTGCCATCGTTCATTTTTAAAGTTCCAAATTACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACCTGTGATATGTATGATCTGACCCAATTATCAACCAG PhaseCut53: +Start +End FragmentLength FragmentNumber 4253 4301 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 4251 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 4275 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 4277 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G46450 8717 LOC_OS04G46450.1-6 osa-miR1436 4244 4264 >LOC_OS04G51910.1-4 GTGAGCTGACTATTACTTGCTAACTGAGCGTACTATTTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGGTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATTACTTACATTGTGAAACGGAGGGAGTACTTGCTAACCGTTGATAACCAGTCTTGCAAATTTCCATGCCTGGTGCTGATTTGATGCAACTTGTTTGTCTCAACAG PhaseCut34: +Start +End FragmentLength FragmentNumber 1157 1277 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1155 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1179 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 TAATGAATCTAGATAGATATATAT 1205 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAACATCAAT 1227 - 2.57 1.11 3.28 0.81 7.94 0 0 0 11.01 5.76 95.16 GAATATGGGAAATGCTAGAATTAC 1253 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 PhaseCut51: +Start +End FragmentLength FragmentNumber 1162 1204 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1160 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1181 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1183 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 LOC_OS04G51910 4341 LOC_OS04G51910.1-4 osa-miR1436 1148 1168 >LOC_OS04G52940.1-17 GTCAGCAGTTGAACAAAATTCATTCTATTAAGATATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGTTAATGAATCTAAATAGATATATATGTCTAGATTCATTAATATCAATATGAATGTGGGAAATGCTAGAATGACTTATATTGCGAAACGGAGGGAGTAGTTAATAACTACTCCCTCCGTTAAACTTCACTTCTAGTCTCTACCATTAGTCCTAAAATAACTTCATTTCTATCCTCTTACGGTTTTACCTACCCTCGGTTCAAAAATCGATGAGCTTTATTCTTCAATAAGCCTTACCAACTCCTTACCTAACCATCCACCCACCAATACTACCTTTTCTATCTCTACCTTGTTTTGCACACCCAAAACTAAAAATGAAGTTATTTTGGGATGGAGGGAGTATGTTTGCATTATTAGTCTTGGATTGATTCTGTATTGTTTTTAGTTTGATCTGCAAAGTTGTATTCTCTAATATGGGCCCACTAGTGTACATTGAAGATTCACTCGAGATTCTGAGTCCTAAGAATTCCACCTGAAATGCTGGATTTATGTTTTTTTGTGAGGCTAATTTTCTAACTATCCAATTGTGGACCTAAGAAGTGTATTTTAGTTTGTCTTTTAGATGCAACTATGAAAGAAATTTACACATGCATATATATTTGACGAGTTACTCTTTGGTGGGTGATATATGCAG PhaseCut73: +Start +End FragmentLength FragmentNumber 7895 8000 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACAATGTAAGTCATTCTAACA 7895 + 0.59 0 0 1.02 0.25 0 0 0 0 0 0 CATTTCCCACATTCATATTGA 7914 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7916 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAAATAGATAT 7937 + 0.2 0 0.22 0 0.25 0 0 0 0 0 0 ATATGTCTAGATTCATTAATA 7958 + 0 0 0 0.2 0.5 0 0 0 0 0 0 TCAATATGAATGTGGGAAATG 7979 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS04G52940 10009 LOC_OS04G52940.1-17 osa-miR1436 7881 7901 LOC_OS04G52940 10009 LOC_OS04G52940.1-17 osa-miR1436 7881 7901 >LOC_OS05G04890.1-4 GTATTGTTTTTGCCCTTTTAGGCAAAATGTCAGTTCAAACATACTTAGACTCCTCAAGGAGAATTCGTAAATCCAAACTTAAATGTTTGTCTTTAATCTGCCAATTGTCAAGGGCTCTGCCATGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACAACAATATGAATGTGGGAAATGTTAGAATGACTTACATTATGAAACGGAGGAAGTAGTAAACAGTAAAAGACTTAATATGATGTGTCAAATTTCCCAAGCTGGCTATGATTTCATCTAAAATGACTTTCTTACTTGTTCTTACAG PhaseCut64: +Start +End FragmentLength FragmentNumber 3023 3167 24 9 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3021 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3045 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3047 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 3069 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 3071 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACAACAAT 3093 - 0 0 0.44 0 0 0 0 0 0.37 0 0 ATCTAGATTCATTAACAACAATAT 3095 + 0 0 0 0 0.25 0 0 0 0 0.16 0.47 GAATGTGGGAAATGTTAGAATGAC 3119 + 3.36 2.21 2.19 1.63 2.23 0 0 0 0 10.36 0.23 TTACATTATGAAACGGAGGAAGTA 3143 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G04890 3304 LOC_OS05G04890.1-4 osa-miR1436 3014 3034 PhaseCut89: +Start +End FragmentLength FragmentNumber 3028 3154 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3026 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3047 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3049 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 3068 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 3089 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ACAATATGAATGTGGGAAATG 3112 + 0.99 0.66 0 1.22 0.99 0 0 0 0.37 0.33 0 TGTTAGAATGACTTACATTAT 3131 - 0.2 0 0 0.2 0.5 0 0 0 0 0 0 TTAGAATGACTTACATTATGA 3133 + 0.2 0 0 0 0 0 0.81 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G04890 3304 LOC_OS05G04890.1-4 osa-miR1436 3014 3034 >LOC_OS05G07720.1-2 GTAATTTATCAATCCGATTTCATCACTTGCAATCAAATTTGTTTTTTCCTTTTCCAGATGAGAAATTTTACAGTTCTTGAAAAATGTAGTTTTATCATTTTTGGAAAAGTACTTGGAGATGCCATGTTTTCTAGTGGTATCTTCATCCTTGAAAAAGGTAGTTTTTCGTTTTCTCATTAGAAATTTTAGTGTCCTTGAGAAAGGTAGATTTATTTAATATCTTTAAGAAAGTACATGGAGGTGCCAAGTTTTATTTTATAAAACTTGGTACCAAAATTCTTATTTCTAGTGTAAAACTTAGGTACTACGAGGTATTTTCTCAGTATCCGTAAAATTTCTTCCTCGAGAAAGTGTCTTGAGATACCTAAATTTCACATTAAAAGTTTTGAGAAGTACCTAATTAAATTTCACATTAAAAATTGATAAGTACAAATATAAGTTTTATGCTAGTAAATGTGATACCTCTAACTACATTCTCAAATATAGTAAAATTACTCTTTTCTGATTGATCTTGATAGGGAAACTATTCTAAACTCTCGAGAGGTGACATTCTCTCATAGTTCGCATATCATCTAAGTTGTTGCGATTTTTTTTAAAAGAAATACATCAACAAGATAGACTGATATTACCAACTCGAAATGATAGAAATGGTAAAGTTAAATACTCCCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCTACATTCATATTGATGTTAATGAATCTAGACATATATCTATCTAGAAGGAAGTATGAATGTTAATGAACTGTGGGAAATATTAGAATGACTTACATTGTAAAACGGAGGAAGTACGATTGATCTTGACATGATTTAATCTTTATTTTTGTTTGACACAATATATCTTTTGTGTTGTGTGGATGCGGCGTGGCGGGGCGCAG PhaseCut30: +Start +End FragmentLength FragmentNumber 1466 1529 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 1464 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAACATTTCCTACATTCA 1485 - 0 0 0 0 0 0 0 0 0 0 0 TTGATGTTAATGAATCTAGAC 1508 + 1.97 0 0 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G07720 2991 LOC_OS05G07720.1-2 osa-miR1436 1458 1478 PhaseCut31: +Start +End FragmentLength FragmentNumber 1466 1562 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 1464 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 ACATTTCCTACATTCATATTGATG 1490 + 0 0 0 0 0 0 0 0 0 0 0 TGTTAATGAATCTAGACATATATC 1512 - 0.2 0 0.44 0 0 0 0 0 0.37 0 0 TCTAGAAGGAAGTATGAATGTTAA 1538 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G07720 2991 LOC_OS05G07720.1-2 osa-miR1436 1458 1478 PhaseCut32: +Start +End FragmentLength FragmentNumber 1467 1587 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1465 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AACATTTCCTACATTCATATTGAT 1489 - 0.59 0 0.44 0 0.74 0 0 0 1.1 0.33 0.47 GTTAATGAATCTAGACATATATCT 1513 - 0 0 0 0 0 0 0 0 0 0.16 0 TAATGAATCTAGACATATATCTAT 1515 + 0 0 0 0 0.25 0 0 0 0 0 0 ATCTAGAAGGAAGTATGAATGTTA 1537 - 0 0 0 0 0 0 0 0 0 0.16 0 CTAGAAGGAAGTATGAATGTTAAT 1539 + 0 0 0 0 0 0 0 0 0 0 0 GAACTGTGGGAAATATTAGAATGA 1563 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G07720 2991 LOC_OS05G07720.1-2 osa-miR1436 1458 1478 >LOC_OS05G33110.1-2 GTAAGCTATGGAACCTACTTTGAACTTGCAGTTGCTTGCTGGTATTTCTAGTACGCGTAATGGATAGTGTAGAAGGCATTTCTAAGTGGACAAAACTGCATTTACATCAGTTAATCTGAATTTCCTCTTCCAAAACCTTGTTTCAGGATAAGGGGATCATAATTACACAAGAATAGTGGATCTTCCTTTTGAAGTTTTCAATTCAGATTTGTCTACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACGTTCATATTGATGCTATATATCTAGATTCATTAGCATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATTACATACGTTCCTATTTTTTCAACTCATACTTGTTGAATTTGTGCATTTGTTGAATATATACTTAGCAAAATAATACGGTATAATGTTGAATCTCATGATGTTAGCATAATCAGATTGGTATTGGAACTAGATTTTGCTTTTATGCTCTATTTGAAGTGCATCTGTTTGTTTCCTTAGCAAAAATAACACAGTATAATGTTGAATCTCATGATGAAGGTTGGATTAGTCGAGCTCTATGTAGCAAAATCAGATGGGTACTGAACTACGATTTTGCTTGTGTGCTCTATTTGAAGTGCATCTGCTTGTTTCTAGCAATACCCATCATTTATAAACTGACACGAATTTAAATATTTCGATATTTCGTGAAG PhaseCut13: +Start +End FragmentLength FragmentNumber 705 753 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 703 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACGTTCATATTGAT 727 - 0.2 0.22 0.22 0 0.5 0 0 0 2.57 0.66 0.47 CATTTCCCACGTTCATATTGATGC 729 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G33110 7860 LOC_OS05G33110.1-2 osa-miR1436 696 716 >LOC_OS05G33110.2-2 GTAAGCTATGGAACCTACTTTGAACTTGCAGTTGCTTGCTGGTATTTCTAGTACGCGTAATGGATAGTGTAGAAGGCATTTCTAAGTGGACAAAACTGCATTTACATCAGTTAATCTGAATTTCCTCTTCCAAAACCTTGTTTCAGGATAAGGGGATCATAATTACACAAGAATAGTGGATCTTCCTTTTGAAGTTTTCAATTCAGATTTGTCTACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACGTTCATATTGATGCTATATATCTAGATTCATTAGCATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATTACATACGTTCCTATTTTTTCAACTCATACTTGTTGAATTTGTGCATTTGTTGAATATATACTTAGCAAAATAATACGGTATAATGTTGAATCTCATGATGTTAGCATAATCAGATTGGTATTGGAACTAGATTTTGCTTTTATGCTCTATTTGAAGTGCATCTGTTTGTTTCCTTAGCAAAAATAACACAGTATAATGTTGAATCTCATGATGAAGGTTGGATTAGTCGAGCTCTATGTAGCAAAATCAGATGGGTACTGAACTACGATTTTGCTTGTGTGCTCTATTTGAAGTGCATCTGCTTGTTTCTAGCAATACCCATCATTTATAAACTGACACGAATTTAAATATTTCGATATTTCGTGAAG PhaseCut13: +Start +End FragmentLength FragmentNumber 705 753 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 703 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACGTTCATATTGAT 727 - 0.2 0.22 0.22 0 0.5 0 0 0 2.57 0.66 0.47 CATTTCCCACGTTCATATTGATGC 729 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G33110 7860 LOC_OS05G33110.2-2 osa-miR1436 696 716 >LOC_OS05G33850.1-1 GTAAGCGTCCTCTTACCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTGATCCCTCTCTATCTCGGGGTTCCGATTCGGGCGACGCGCCTGGGGCCCCGGGAGTTGATCCGCGCGGGCGGAGGAATGGGGCTGCGGCGTGGGAACCGCCGCCGCCGCGGAATTTCGGGCCGCGCGCGCGGTGTTTTGGCGCCAGGGGGATCGCGCGATTCGGCGGTCTGGGGGGCCCCTGTGGCGTCGGAGTTGGAGGGTGTCCCGCGGGTGGCTTCGGCTCGGGGCACGCCGCATGCCTAGAAATTTTGTGAAATTTCATTTGGGTGGGTGGAGTGGCGTGCTTTGGATTCCAGGGGAACCTTTCCATTTCGCTATGTTTTTGGTGAAACTGTGGAGGCTATTGTTCTAGGGTGTTACATGGCAGGATAAAGTTTCTCTGTTTTGTTTGCTTTCTGATAATTGGTTTCAGATTGTAGGTGGTGAAGGAAACACAAAATCCATTTTAAATGCTATATTAAGTGCAATTGTGTGATCGAACTTATTATTTTGGTACTTAAGATTCTGGTTCAGATTTGAGAATCCTGAAGAAGGCAATGGAGGAAAATATGTTCCGAGCTAATCGTAAGAACAGGCGGTTGGATTATGTAATTGTGTTCTAGTAAATAAACAGATTTGTCGATACACATGGACCAAACAAGCAGTATTTAATGTAGCTAGTATACGATACTAGAGATATAGATGGACAGAGATTGATACTCAGATGGACATATTGCCAAAATGTAGTTGATTTAGTTTCAGTAAAACAAAGGAGGTTGCACTAATCGCATCGTTTGGCGAGCAACTTAGCATGCTTTTGCTATCAGCTCATCGTGCATCTTAATTACTGTTACATTGGCTGCCATATGGATTGTGGTGAATTGATGTATTTTATGTAAACATGGTCTTGAGTTAGCACGCCATCTGTTTTTCTGGACTGTTAAATATATAAATTTCTGTATGCTACATTCTTTGTTTAATCCTCGTTGTTTATTTATTTCTAATTGATGTCTTCAATGGTGTTTAGACGTACCCAACCATTGTTTGTAAACTATGAGGTTTTCATACTTGTAGCCACTGGGAATGAAATGGAATGTTGTGTTAGATATGCCCCCAAAAAAAAATCAACACCAAGGAATTAACAGGGCTCTAAATCTTTGTCTGTTCTTTATGGGCTATTGTTCTCCTTTTGCCTATTCTAAATTCAGCTATGCAGGAACAAAATTGAGGGATCTGATATATTTGATTATGAAATTCAGGCTAGTTGTTATTGTGCAAGAACAAAATTGAGGGATCTGTTATATTTGATTATGAAATTCAGGCTAGTTGTTATTGTTTATGTCGGAGAGGTTTTTGCTGAACTGCAATTGCATTCATGAATACCGTTATACACTTTAACCAATAGGAAAATGTATTTTTAGTTAACCGCTGCCATGTAGGGTACTTTTGCACTAACTTGAATGTTTCTTCTGTGCTTGAGCCTTGAGAGAACAATTATATCACTACAAATAGCTTGGTTTTGCCAACTGCTCTAAGAAACTCTCGGTTTCTAGTTGAGCTACATTTATCTAAGCACAAGCTGCAGTTTGTGCTGACTAGCATGCCATAGTGAGAATGGCTTATAAAAACCAGTAGTTATTAGGATTCTAATCTAGACTAGGTGTTCTTACCACCATCAAATATTCTATGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGTCATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAAGTGTTAATTTATTGCACTTTTGCTGCCAGTAGGTATCTGGTGAGCATTGAAATGTCATGTTTTTAATCAAACTAGTGTTAACATCATAGTGATCCTGAAGTTCCATCCAACCTATGCTATTCTATTTAAAAATAGAGGAGTCCTTAGATGGGCATATGCTATGATTTTCTTTGCAATAAGTCCTATGTTTTTTTTTGTAGTTATAAACTATTTTGAAAATTGGACTGCAG PhaseCut60: +Start +End FragmentLength FragmentNumber 1947 2073 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1945 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTTCCACATTCATATTGATG 1968 + 0.59 0 0 0.41 1.49 0 0 13.62 0 0 0 TGTTAATGAATCTAGTCATAT 1987 - 0 0 0 0 0.25 0 0 0 0 0 0 TTAATGAATCTAGTCATATAT 1989 + 0 0 0 0 0.25 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 2008 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATGAATGTGGGAAA 2029 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 2031 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 CTAGAATGACTTACATTGTGA 2052 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G33850 4677 LOC_OS05G33850.1-1 osa-miR1436 1933 1953 LOC_OS05G33850 4677 LOC_OS05G33850.1-1 osa-miR1436 1933 1953 >LOC_OS05G38730.1-14 GTACTACTAATCTCTCTTAGAACATTGTAATGATCATCATAGGACAGCAAGTGCATAGATATGAATGGGTGACTTATTTTCAGTCTGCACGACCAGTGGAAGGGTATAATATAAATATAAATGGGTGACTTATTTCCCAGGCTCCCAGCTAAGTGATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGCTAATGAATCTAGATAGATATATATGTCTAGATTCATTAGCACCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAAATGTGTTAGTCCCAGCTAAGAGTGTTCATCTAGTCTAGGCTATGGAACAATAATATCCCAGCAGCTGCACCCTAAATGCACAAAGCCATTCAGCTAGCCTAAATTAGTACCATCATTCTCTTTCTCGAGTTATTTTAATTCTACATAAGAGCTCCAATTGAATATCTGCTTGATTTGGATTGTGCAAAGATGCAGATAATCTTGTATTAGTTTGCAGGGATGATTTCACAAATTGAGTCCATTTCATACTAATTGAATACTTATGGTGTTTTGCTGAAATATGTGATTTACCTGGTATATTCGATAGCTATACGTGTACATGTTTTCCTCGAATGTCAACCATTGACCTTAGCGTATTTCTATAATATAATCTGGTAATGTTCGTGCCTTTCTTTGCTTGGCAG PhaseCut34: +Start +End FragmentLength FragmentNumber 7332 7416 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 7330 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAACATTTCCCACATTCA 7351 - 0.59 0 0 0.61 0 0 0 0 0 0 0 TTGATGCTAATGAATCTAGAT 7374 + 0.59 0 0.22 2.04 0.5 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 7393 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 7395 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 PhaseCut37: +Start +End FragmentLength FragmentNumber 7333 7453 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 7331 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 CATTTCCCACATTCATATTGATGC 7357 + 0 0 0 0 0 0 0 0 0 0.16 0 GCTAATGAATCTAGATAGATATAT 7379 - 0.59 0 0.44 0 0.5 0 0 0 0 0.16 0.47 TAATGAATCTAGATAGATATATAT 7381 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAGCACCAAT 7403 - 0 0 0 0 0 0 0 0 0 0.16 1.4 GAATATGGGAAATGCTAGAATGAC 7429 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 PhaseCut63: +Start +End FragmentLength FragmentNumber 7338 7422 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACAATGTAAGTCATTCTAACA 7338 + 0.59 0 0 1.02 0.25 0 0 0 0 0 0 CATTTCCCACATTCATATTGA 7357 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7359 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 CTAATGAATCTAGATAGATAT 7380 + 0 0 0 0.2 0 0 0 0 0 0 0 ATATGTCTAGATTCATTAGCA 7401 + 0 0.22 0.66 1.63 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.1-14 osa-miR1436 7324 7344 >LOC_OS05G38730.2-14 GTACTACTAATCTCTCTTAGAACATTGTAATGATCATCATAGGACAGCAAGTGCATAGATATGAATGGGTGACTTATTTTCAGTCTGCACGACCAGTGGAAGGGTATAATATAAATATAAATGGGTGACTTATTTCCCAGGCTCCCAGCTAAGTGATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGCTAATGAATCTAGATAGATATATATGTCTAGATTCATTAGCACCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAAATGTGTTAGTCCCAGCTAAGAGTGTTCATCTAGTCTAGGCTATGGAACAATAATATCCCAGCAGCTGCACCCTAAATGCACAAAGCCATTCAGCTAGCCTAAATTAGTACCATCATTCTCTTTCTCGAGTTATTTTAATTCTACATAAGAGCTCCAATTGAATATCTGCTTGATTTGGATTGTGCAAAGATGCAGATAATCTTGTATTAGTTTGCAGGGATGATTTCACAAATTGAGTCCATTTCATACTAATTGAATACTTATGGTGTTTTGCTGAAATATGTGATTTACCTGGTATATTCGATAGCTATACGTGTACATGTTTTCCTCGAATGTCAACCATTGACCTTAGCGTATTTCTATAATATAATCTGGTAATGTTCGTGCCTTTCTTTGCTTGGCAG PhaseCut34: +Start +End FragmentLength FragmentNumber 7332 7416 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 7330 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAACATTTCCCACATTCA 7351 - 0.59 0 0 0.61 0 0 0 0 0 0 0 TTGATGCTAATGAATCTAGAT 7374 + 0.59 0 0.22 2.04 0.5 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 7393 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 7395 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 PhaseCut37: +Start +End FragmentLength FragmentNumber 7333 7453 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 7331 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 CATTTCCCACATTCATATTGATGC 7357 + 0 0 0 0 0 0 0 0 0 0.16 0 GCTAATGAATCTAGATAGATATAT 7379 - 0.59 0 0.44 0 0.5 0 0 0 0 0.16 0.47 TAATGAATCTAGATAGATATATAT 7381 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAGCACCAAT 7403 - 0 0 0 0 0 0 0 0 0 0.16 1.4 GAATATGGGAAATGCTAGAATGAC 7429 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 PhaseCut63: +Start +End FragmentLength FragmentNumber 7338 7422 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACAATGTAAGTCATTCTAACA 7338 + 0.59 0 0 1.02 0.25 0 0 0 0 0 0 CATTTCCCACATTCATATTGA 7357 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7359 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 CTAATGAATCTAGATAGATAT 7380 + 0 0 0 0.2 0 0 0 0 0 0 0 ATATGTCTAGATTCATTAGCA 7401 + 0 0.22 0.66 1.63 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.2-14 osa-miR1436 7324 7344 >LOC_OS05G38730.3-8 GTACTACTAATCTCTCTTAGAACATTGTAATGATCATCATAGGACAGCAAGTGCATAGATATGAATGGGTGACTTATTTTCAGTCTGCACGACCAGTGGAAGGGTATAATATAAATATAAATGGGTGACTTATTTCCCAGGCTCCCAGCTAAGTGATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGCTAATGAATCTAGATAGATATATATGTCTAGATTCATTAGCACCAATATGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAAATGTGTTAGTCCCAGCTAAGAGTGTTCATCTAGTCTAGGCTATGGAACAATAATATCCCAGCAGCTGCACCCTAAATGCACAAAGCCATTCAGCTAGCCTAAATTAGTACCATCATTCTCTTTCTCGAGTTATTTTAATTCTACATAAGAGCTCCAATTGAATATCTGCTTGATTTGGATTGTGCAAAGATGCAGATAATCTTGTATTAGTTTGCAGGGATGATTTCACAAATTGAGTCCATTTCATACTAATTGAATACTTATGGTGTTTTGCTGAAATATGTGATTTACCTGGTATATTCGATAGCTATACGTGTACATGTTTTCCTCGAATGTCAACCATTGACCTTAGCGTATTTCTATAATATAATCTGGTAATGTTCGTGCCTTTCTTTGCTTGGCAG PhaseCut34: +Start +End FragmentLength FragmentNumber 7332 7416 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 7330 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAACATTTCCCACATTCA 7351 - 0.59 0 0 0.61 0 0 0 0 0 0 0 TTGATGCTAATGAATCTAGAT 7374 + 0.59 0 0.22 2.04 0.5 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 7393 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 7395 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 PhaseCut37: +Start +End FragmentLength FragmentNumber 7333 7453 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 7331 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 CATTTCCCACATTCATATTGATGC 7357 + 0 0 0 0 0 0 0 0 0 0.16 0 GCTAATGAATCTAGATAGATATAT 7379 - 0.59 0 0.44 0 0.5 0 0 0 0 0.16 0.47 TAATGAATCTAGATAGATATATAT 7381 + 0 0.22 0.22 0 1.99 0 0 0 0 0.66 0 ATGTCTAGATTCATTAGCACCAAT 7403 - 0 0 0 0 0 0 0 0 0 0.16 1.4 GAATATGGGAAATGCTAGAATGAC 7429 + 4.94 0.66 3.5 0.81 2.48 0 0 0 0 22.86 1.64 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 PhaseCut63: +Start +End FragmentLength FragmentNumber 7338 7422 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ACAATGTAAGTCATTCTAACA 7338 + 0.59 0 0 1.02 0.25 0 0 0 0 0 0 CATTTCCCACATTCATATTGA 7357 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7359 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 CTAATGAATCTAGATAGATAT 7380 + 0 0 0 0.2 0 0 0 0 0 0 0 ATATGTCTAGATTCATTAGCA 7401 + 0 0.22 0.66 1.63 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 LOC_OS05G38730 8487 LOC_OS05G38730.3-8 osa-miR1436 7324 7344 >LOC_OS05G47670.1-2 GTACACACAAATCCAATGCATGCAACTATCCAACTAATCACAATATTTCTGCCTTTCTCTCACACTTTCAGTCATCAGTTGCGTCTGCACCACACAAGTACACACAACTTTTCAACGCGATTATCCGTCTTGTTGGTAGATGTGTTTGTTTAGATGTCACATGATGGCATCCGCTTTGCATGTTGTTAACTAAAGCTCTAAAAAAACGAGATTTGGAGGGAGAGACGTCCCTCCGAACATTTGTAAGAAGAAATTGTGAGTCCCTCCGAACATTTGTAAGAAGAAATTGTGAGCGTATTACGGATTGAACACGGGACCTTAAGGTTGAAATCACACAACCCGTGCCACTGCACTGTCAAGTACATCTCATTGTTAACTAAAGCTCTAGATGGATGCTTAATTGCAAGTTCAATAATAAAGAAGAGGGTCGATGCAGCTTTGAAAAATGGTAGTACAACATGTTGATTTACATACTCCGGTTTGGTAGTCACGGATATGTAGGACAGGCAGCAGATTGGAAGGAAGGAAGAGCACATGAGAGCAAAGGGGATATGGTGGTCATGAATAGATAGATACGTTAGGTGAAGAAGAGAGACCTCCTTTGAGTGTAGTTGCAGAGTCCTCTTTCTTTTCTGTGTACACGCATAAGGCATAAATGCTGAATCATTGTGCTGAAGCTGAACTCACTGAACAACCACGTTGCTGCTGGTTCTTTTGGTCAGCTTCAGTTGGCTGCCATGTTGCTGGAATGAGTGGTGGTTGATTGTTTAGTGTTTACTGTTCTGTTGTAGGATTGGAGCATGAGCAGTGAGGAGTTTGAATGCCCAATTGGTGATTAGATAATCCTGTCACTTTCTTCAAGTAGTAGTATGAACTGTGAGCTGACATGCTTGTGAGGGAAACATGCTTGCAGTTAAGACAGATTGAAATGTTTAGTTCTGAGAAATGAGCTGTCATATGCCACTTGGTTGCTTACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAGTGAATCTAGACATATACATCTATCTAGATTCATTAACAACAATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGAAGCGATTGTGAACACAATACTCAATCCGCTTTAGTAAGTGATGGCTCCAAGTTCACAATTCTCAATTAGTTATGTCCAATTAAGATCCACCAGTACCTTTTTAGCGTATTTTTGCAGAATGTGTGTATCTCCAAATATAACGAACACCTCTTTTCATCTTCAGTTTTATTAAATCATCTTTGCAAATTGCAG PhaseCut51: +Start +End FragmentLength FragmentNumber 1935 1983 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1933 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1957 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1959 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G47670 3143 LOC_OS05G47670.1-2 osa-miR1436 1926 1946 LOC_OS05G47670 3143 LOC_OS05G47670.1-2 osa-miR1436 1926 1946 PhaseCut63: +Start +End FragmentLength FragmentNumber 1940 1982 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1938 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1959 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1961 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS05G47670 3143 LOC_OS05G47670.1-2 osa-miR1436 1926 1946 LOC_OS05G47670 3143 LOC_OS05G47670.1-2 osa-miR1436 1926 1946 >LOC_OS06G02210.1-3 GTACCCTCCAACTGTGATCTGATTCCGTTTCCAACCTCAAAGAAGTAAAGATTCAAAGCAACTGGAATCTGATTATTCCCCTTAAAAGAATGGAATATGATTATCTGTAAATCCAGTATTATAGTTGCTTTGAATCATTAAATTAGTTACATCGTGTCAAAATATATACACTACTGTACTTTTAAAAGAATGCTTTGGTGAGTCTACCACCCAGCCTTCTCTCTACTACATCTTCTACTGACTGCTTTGATGTGTTCAATAAAAAAAAATTCCATTTGCTGCATAATGTTAGGACATGAGTGGCTCATTTTTAATCTTTAGCAAATGAATGAACATTCAGCTAATCTATTAATAAATTTAGTTCTGACTAGAGAAAATTAAACTAGCAATGCTTATATAAGCATGTTAGTTTTAAATACTATGGTATACTAAAAATCAAAATCACATTTAGTAGTAGCCTAGTAGGTAAACACACATCGAGCCTGGAGTGAAAGTAGAGGACAGTTTATAAGCACAACTACAGGATAATTAGAACATACTCCCTCCTTCCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTTAATTTTTTTGAATAAAACGAACGGTTAAACATTTTTAAAAAAGTCAACGGTGTCAAATATTTTGGGATGGAGGGAGTATTTTAGTACCAACTGTCTCACGTTTCAAACTAACTCTTTATATGACTTCTTGTTTTTGATTATTTTAG PhaseCut119: +Start +End FragmentLength FragmentNumber 2611 2683 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2611 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 2633 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 2657 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 2659 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G02210 3943 LOC_OS06G02210.1-3 osa-miR2123c 2600 2621 LOC_OS06G02210 3943 LOC_OS06G02210.1-3 osa-miR2123b 2600 2621 LOC_OS06G02210 3943 LOC_OS06G02210.1-3 osa-miR2123a 2600 2621 >LOC_OS06G05250.1-8 GTAAGTTTCCTTTTCAACTCGGTAACCATACATGGTCTTGTCTAATCTTTTGATTTTTTTTAAACATTCTGAGATGGAAAGGCATGTATCTGTTTTCTTTCATCAGGTGGCCTTATTATTCTTTTCTGTTTTTTTGCTCCTTTTTGTGATGATTATTTTGGAGGCCTGTTTTATGCCCCATTCCTGAAATTCGTACTACACCTTGCTCACAATTTTCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATATTAATGAATCTAGATAGATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTTACAGTTCTTGTCTCTACTCCAGCATACTAAGTACTAGTAGTCACCTCACTTTCTTTAAAAAAAAGCAAAGTTGTAAGCACAAATAGAAAGCTCTCTTGGGAGTTTAGGCATCTAGTGTTTTGACCTTTTGAGAGTGTTTCCTGATGAATAATTATTACCAAATAATGTGAACTATAATCACATTCTGGAGATAATTTGCATTTCATGCGACTTATATTATCAAATTGCATGTAGGTATATTTCTATGGTTAAAATTAAATGGGTGACAAAGCAGGAAAAAATGCCACTATGGATGGCTGTTTATTTTCTTGTTTAACTCCCTTTAATTTACTTCAACAG PhaseCut43: +Start +End FragmentLength FragmentNumber 3166 3214 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3164 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3188 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATA 3190 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G05250 5520 LOC_OS06G05250.1-8 osa-miR1436 3158 3178 LOC_OS06G05250 5520 LOC_OS06G05250.1-8 osa-miR1436 3158 3178 PhaseCut50: +Start +End FragmentLength FragmentNumber 3167 3263 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3165 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3189 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 ATTAATGAATCTAGATAGATATAT 3213 - 0.2 0 0.44 0 0.5 0 0 0 0.37 0.33 0.94 GTCTAGATTCATTAACATCAATAT 3237 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G05250 5520 LOC_OS06G05250.1-8 osa-miR1436 3158 3178 LOC_OS06G05250 5520 LOC_OS06G05250.1-8 osa-miR1436 3158 3178 >LOC_OS06G05250.2-8 GTAAGTTTCCTTTTCAACTCGGTAACCATACATGGTCTTGTCTAATCTTTTGATTTTTTTTAAACATTCTGAGATGGAAAGGCATGTATCTGTTTTCTTTCATCAGGTGGCCTTATTATTCTTTTCTGTTTTTTTGCTCCTTTTTGTGATGATTATTTTGGAGGCCTGTTTTATGCCCCATTCCTGAAATTCGTACTACACCTTGCTCACAATTTTCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATATTAATGAATCTAGATAGATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTTACAGTTCTTGTCTCTACTCCAGCATACTAAGTACTAGTAGTCACCTCACTTTCTTTAAAAAAAAGCAAAGTTGTAAGCACAAATAGAAAGCTCTCTTGGGAGTTTAGGCATCTAGTGTTTTGACCTTTTGAGAGTGTTTCCTGATGAATAATTATTACCAAATAATGTGAACTATAATCACATTCTGGAGATAATTTGCATTTCATGCGACTTATATTATCAAATTGCATGTAGGTATATTTCTATGGTTAAAATTAAATGGGTGACAAAGCAGGAAAAAATGCCACTATGGATGGCTGTTTATTTTCTTGTTTAACTCCCTTTAATTTACTTCAACAG PhaseCut43: +Start +End FragmentLength FragmentNumber 3166 3214 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3164 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3188 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATA 3190 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G05250 5520 LOC_OS06G05250.2-8 osa-miR1436 3158 3178 LOC_OS06G05250 5520 LOC_OS06G05250.2-8 osa-miR1436 3158 3178 PhaseCut50: +Start +End FragmentLength FragmentNumber 3167 3263 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3165 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3189 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 ATTAATGAATCTAGATAGATATAT 3213 - 0.2 0 0.44 0 0.5 0 0 0 0.37 0.33 0.94 GTCTAGATTCATTAACATCAATAT 3237 - 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G05250 5520 LOC_OS06G05250.2-8 osa-miR1436 3158 3178 LOC_OS06G05250 5520 LOC_OS06G05250.2-8 osa-miR1436 3158 3178 >LOC_OS06G06280.1-4 GTCAGTTCTGTTATTTAGTCTTGTATGACATAATGAACCCCTTTTATGCCATATTGTTTTTTTTATTGAGAAAGTTTAACTCTATGAAGAAATGCATACAGCATCGTGGCTCATGCTAAGCAAATGTAAATTAGATAATAAAGAAATTTTTTCGTCCAGATGCGACCCTCACACCTCCACAAAAAAGTTAATAATTTTATGGTGTCAAAAAATATTTCATCACTGTATAAATATGAACTGAAAATAACTCAGTTTCAGATTCGTAATTACGTGTTTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCTATATTCATATTGATGTTAATGAATCTAGATAGATATAGATGTCTATATTCATTAACATCAATATGAATGCGGAATATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATGTTATATTGTACAAAACCAGAACTGCTGGTACCTCAATATCCGGATGGTTTCTCATAAAGTTAAGCACAGACCACACTAGATATGGTGTGTAAAGCAAGCACTTGATCTGTAGGGTTGGAAGGCGAAGGAAAGGATTAGCAAGGAACGTGTTTACTTGATTGTTTTTCAGATGTTAATGCGCATGTATCCCAAACTAGATGAATACTCCGTCGCGTTGCTGCGGAAAATTAAGTTGCATAATATGTACAAATAAGATGTAATTTGATTATCAAAACTAAAACAATTTGATACAATTTTGAGCCTAAAAATAATTGAGATTGCATGTTTTTAAGAGAGAAGAAAGAAGAGACAATTTGGATTATAGATCTATCATCCAAAGGCTAGAAATAATTGGGGTGATGTGGCTTAATGAGAGGAGAGAAATAGCATTAACTACACTTAGTGGGGATGAACTATGTAAGTATAAAGGATTCCTGAATCCTAACGACTTTTGTCAGGTTCAACATCTTATCAGTATTATTCGAGGATCAAAGAAAATCATATATATCCTTCATCAGTTTTGTATTTTGTCACACGCTCCACCCTCCAATTCACCAGTGCAGCTGTCATTTTTGAATCTGTGCTTAAAATATTGCTAGCTTAGCTGTGCAAGCACTCTTGTGATCCTACAAGTTGGTGCAAGCACAAAGTGTTCAGTTTGTGAGTCTATTCCCTCCAACGTGATTTTCAGTTTCCTCTTTGCTATTATAGTTTTAAGACAGTTGTTAGCTTAGCTTTTAGGGTAGTATAGACAGAATTCTATAACCAAGGCATGTTGCTGTGGCAAATGGTGTGAGGGCATATATGCTGAGTATACCACATGCTGTTTGGACTTCAGACTTTCTATTGTTCCACACAGCAAAAATATTCCATGTACCATTCATCAATGACTGCTTATCATATTGTTTCTGCTCTTTTTCCAAATGCAG PhaseCut40: +Start +End FragmentLength FragmentNumber 2206 2269 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 2204 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTCCTATATTCA 2225 - 0 0 0 0 0 0 0 0 0 0 0 TTGATGTTAATGAATCTAGAT 2248 + 0.2 0.22 0 6.11 2.48 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G06280 5039 LOC_OS06G06280.1-4 osa-miR1436 2198 2218 LOC_OS06G06280 5039 LOC_OS06G06280.1-4 osa-miR1436 2198 2218 PhaseCut41: +Start +End FragmentLength FragmentNumber 2207 2303 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2205 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCTATATTCATATTGAT 2229 - 0.2 0 0.22 0.2 0 0 0 0 0.37 0 0 TAATGAATCTAGATAGATATAGAT 2255 + 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTATATTCATTAACATCAAT 2277 - 0.2 0 0.22 0 1.49 0 0 0 0 0.66 4.44 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G06280 5039 LOC_OS06G06280.1-4 osa-miR1436 2198 2218 LOC_OS06G06280 5039 LOC_OS06G06280.1-4 osa-miR1436 2198 2218 >LOC_OS06G09540.1-9 GTAAGTATCTGTTACCTTTTCTATTTAGTTTGAATTCTGTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTATTATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTTTTACCTGATGGGCTATTTATACAAAGGCAGCATTTTCTTCTGTGCCTTTCCTTATTTTCACTATGGGCTTTATAG PhaseCut39: +Start +End FragmentLength FragmentNumber 5143 5191 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 5141 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 5165 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 5167 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G09540 10278 LOC_OS06G09540.1-9 osa-miR1436 5134 5154 LOC_OS06G09540 10278 LOC_OS06G09540.1-9 osa-miR1436 5134 5154 >LOC_OS06G20040.1-1 GTATATATGCCTGACCTTGCTTAATTTTCTACATGTAGTTCAGTTCATCTGTTGCTTTCTCGTCATTTCTTTGCTGTTATTCTTCTGTTACTGCTGAAGTATTGTATGATCATGTGAATTGTTAGATTCCTTAATATAATTAAGGACCAAAACATAGTATGTCCAATGGATTATGCCCATATAGATAGAGAGAATAGTTTAGTGCTTAGCTTGAACTGTCATGACAGTTTTTGCAAGCAGAGACAGTGTAATCTTCTTGACAAGTACAGAATTAACAGATTACTGGATTCTTTCCAAGGCTGGTGTTACATTTAGATGTTTTAGTACAAAACAGATGGACAAAAAAAATTAAAATACACAGAAATCAACCTATCTTGTCTCCTTTTGCCCTTTTCTCCTGAGATCACGAGTATTAGTTCCAGCCTGTTTCTTGCCTGAAAGGCTGAGACACTGTGATCCAATTGAATTGGAAGCAGCGGTGCTTCATTATTACTTCCTGAATATTTCCACGACATCCAAACACATACAAATTTGCGTACTACTGATCTCGTGAATCCAATTGCTGCCACCTCCAATTCAGTTCATCTCTATTTGCTTTGCACAAGATGGTCAAGCCTTTTTCTCTTGCTTTTGGAAATATGAAGGCTAGGAGAGGCAAGAATCCAAGAGAGAACTAAGGAAGTGGTAGATGGCGCGTCAACTGTCACTAGCTAGGTCCACACACAGTACTGATCTCTTTTCAATTTAGTGATATGATTAATTGAGATGCTATTAATCATCATCTTTTTGTCCTTTTGGTTTGCCATGATAACAGAGATCCGTATGAACCTATCCTATGCAATATTGCATTAATCTCTGTAAAGAATTTAGCATAGGAATGGCTTCAGGAGGAAAAAAAAAACAGAGAAACAACGTTAATCTTGTAAATCTATTCTAGTAGGCTGTAATTAACTCCTTTTTAACCTGAATAAATTGCCGATAGATGGTAATTAATATTGTTCTGAGAGTCTGCTATCAGCAGTTCCTTTTGCAGTTTCAGCCTTTGAGCTGATCGATCTTTTAACATACTACCTTCGTCGGTTCGTAGCTAAAAAGACACTCTTTTAAAAAAGGTTGGACACTAAGGACTTAATGTCAATAGTTTTAAGAAAGAAGAAGTAAATATTTCTTGTGAGCGTCGACGAGAGTCGAACCTGGGCCGATGGGGTGCAGAACAACCATATTAGGGCAGTCTCAACCCATAACACTAGACATAGTTTCCATAAACTCCACATCATCGATAAACTAGTACTAGACACTACTCTTCCAATGCAAACACCACTATTCCATATTTCAATTTAATGCTAGTTATCTCACATGATGTCTTAGATGTTGTGTAGAAACCATGTCTCATGCAAGACATGGTTTCCTTCTCTTTCCTCATTTATTCACTTGCCATATCATTTTTTATCCTAGGTGGCAACTTATTTAATGCTATGAACACCTTCCTAGTCATTGGGTTGGGAATGCCCTTATCAGACAAAGTTAAGAGCAATGATGAACACTACAGCAAATTAGCCTATCAATAGCCGACCTGAAAAACATGGAGCTTGTCTTTAGGAGCACTGAATCAAGTGATGCTCTGCCCCTTTTCTTTGAAGCTATAAATAGCAGTGGTCCAGCTATGAATTTTCCAAACCAAACCCTATAGAACTCGACAAAATCCAGCAAGTACCATGGTCCATGGATGATTAAGTTATTTGATTTAACAATTTTTGGATGCTTCTAATATGATATAAAAATATTCGAAATGCGCACTAGTTTCTGCACTATGTCAGGCGTTTTTTGGGGGTACGCTACCTGTAAAAAAGTGACCATCATCTACAGAGAAGAGTCAACCAATGACGTGTGGCGAATAGACCCTCGCGTGCACCGATTAAATTCTCTTCTTCTGAGTAATCAAGTCCACAAAATTGTTTGGTTTACTCTTGACTCCGCTTGACTCGTTTTGACCCCAACCCTCTGTTAACACTCTCTTACTATATATTGTGTGTTGTTCACTCAAAACGTTTTGTTTAAGAGGAGGGAAAATTAAGAAGACTGATTTCTCTCTCTTTGTTGTTCTGCATAACACAACCAACGGTTTGGTGTTGATGGATGATGGATGAAACCAAGCTTAATTATAAAATATATTTTGAAAGCACAAACAAATGAATTAAATATTAGAAACTTTAAATTTTGATTTATAAAGTTTTCTTAGAAATACCAATGAAAAGTTCACTTAAAATTAATCGTACCGTTTAGAATATTAGAAAACGTGTCCATGATATATATTCCGTGTTCCGTTAATCAATTAAAAATAACTGCCCTAAATATGAAATTGTAGTGGTGATATTTTCAAACAAGAACACATCAAAAAATTATTGAAAAACCTGATCTGATGGATGATCGTCCGACAATTGCACCCTTATTAAAAAAAAAGAAAGAACGGCCATGGCAATATATATTATTCCCTCCGTTTCTAAATATATATTTGACGTCATTGACTTTTTTAAATATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTATTTTCATATCATTTGATTCATTGTTAAATATACTTTTATATATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACGAACGGTTAAACATGTGCTAAAAAGTCAAGGGTGTTAAATATTTAGAAACGTAGGGAGTATCTGATTAAGGGGGGTGTGAGTATGTGACACCTGATGAAAATGTGACAAAATAGATGCATACTTTCAGTTGTATAATCATCGTTTTGGAAATTGGAAGCAGACATGAAGAACCTAGACATAATATAGCTAGCTAGGTCCCAACTCCAAAAATTCCCATTCGTGTTAGGACAGATTCTGCACTCCGTGGTCCATGTATATTGTACTCAAGTACATACAATCCTGCAACAAATCATTCACACGTGACCGTATGACCCCACACCAACCTAACTTTTTTTATTTTTTTGAGAACACACACCAACCTATCGATTATCGAACAATACTGTGCTACGCAACAATGGCATCTCGAATATAATCAAACGTGACATTTGGTTTGGCTTTTTCTCGATGGAGTATATATATACAACATTAATTCGATAGTTTTTTTTTTAAAAAAAACTTTTAAATGTAAGAATGTACTTCATCCATTTCAGGTTATAAAATATTTTGATGTTGGTCAAAGTTAAACTGTTTTAAGCTTGAATAAGTTTATAGACAAGTATAGTAATATTTACATTACCAAATTAGTTTTATTAAATTAATAATTAAATATATTTTTATAATATATTTTTATTGGTTAAAAAATATTACTATTTTTTCTATAAACTTTGTCAAACTTAAACTAGTTTGACTTTAATCAAAGTCAAAACATCTAATAAGCTGAAACGGAAGGTTATATTGTAAGTGAACTTAGATTAAGCAATTAAGGTCCCCATCATTTGGCTTATTTCCTAATAAGCCAAAACGGCTTATTAGGAAATAAAAATAAATTTGTGGGTAAAACTTTTATAAATGTGTTATTTGTGACTTAAAAGCCAATGTTGAAAAAGAAACTATGTTGAAAATATGTCAAAATCAATCTTAAAATTAAGCTTAAAAATTTAAAATTTGGCTTTTTCTTTGGTTTATTAGGCTATCCGACGAGGCTGTAAGTGCAGAAAGTCGATTAGCACCACGAGCATATGTGCGTGAGGTCGTAGGTGCAATCCTCGCCTCACGCGAGCGCGCGGCAGAAATTTTATTTCATATTTGCATGAATCTTAACACTCCTTTGAGAGTTTACAAAGTGAAAGCTTTTTGATCAAGCTGTCAGACAATTTTGTAGCGATTTTCGTTCCTTAATTACATGAACGATTATAATAAGGCTATTCGGCCTTCGTACCTAAACTATGCTCACCTATATATATCCGCTAATGCCAAAATCTGTGTCGGCTGGCCAGTCTGCCTGTCTGTCCGAGATCAATGCATCTATACAGATCGGTGTCTGATTACTTAATTTGTTTGGCTAGCTTAATCTGCAACGTGTTGCATACCGCGACAAGCTTATCGATCAAAAGCTATATATACAGACAGATTGATGTACGACCACAAGTACGTACGTACTGGGGTCAAATCGAGGATGATATCTGTACGTCGACAGAGAGTATTGGACAGGTGTAGACAGTCACATGCGTTTGTTCTTGAGAAAGTTCTTCAGACCAGCGACTTGTTGATCGATCGATAGCTCGGTGCCGCTGCTCTTGCATTTGGTGGCGCATCACTGTCTCGTCGCATTGTCGCACGATCGACCACAAATACCAGAACTACTTGTGGCACAACACGATTGTCTCCGGCCCTACGGCCGGCACCTACCTAGCTAGGTTAATTAGCTGATTAGCCAGTGGCTACTAGCCCTATCCTAAAATATAATAATTTTTAACATTTAAAATTTATCCTAAAACTTAATAACTTTTTCATGTTCATTTTCTTCTCAACCAATTATAATCTTATTTCATTCAAATTTTACAGTTATTTTTTAGTGGTGGTTATAGAGGTTTTGAGGGTGGCCTTTGGATTACCCTATCCGTTAAATATTTTTTTTAAAAAAGATGTAATTTCGATAAAATAGATGTAAATTTGATATTATGCAATTTCGAATTATGGGGGTAGGATCACCCAATGAAAACTTCTAGAGCCACTGCTACTTTCTTGTCCCATGCTACTTTCTTGTCCCTAGCAATCACAATCTTTTCACATTTAATTCCACATATTTTCTTAATACTCATATTCAACCCTAAAAATTATTATATTCTGGAATGAATGTACTCCTAGCTAGCAAGCATCTGTTTCAGTCACTTGGCAGAGTTTGTGGAGTTTCTGCTACTGAGTTAAACAATTGGGCTTTCCCTATGATCAAGTGATTAGTTCTGTATTTTCATCCTAAAATATAAAAACAATTTAGGATTAAACATATTAAAAAAAAGTAGGTGGAATTAAACAGAAGAAATGTTTTGATTGAATTAGAAGAAAAATTAGGTTAAGAGATTAAATGGGGAATGTTCTCAACAAGTGAATCGTTAAGAAGATAATATAGTTGGAAAAATTGTTAAATTTTAGGGTAAATTTGAAATGCTTACAAAAGTTGATATATTTTAAGACTGATGGAGCAATTGTTTAGGTTTGGGTTCACAGTTTCGGAAGTAAATTTGCAAAATTTGGACCGTGATAAGCCCGACGCGCCTCTACAAAAAATAATGTTTCTAAATTATTTAAATTTGACAAAAGTTTGTTCGAATTTACTAGTGTTAATCTGTTCAAATTTCAAAATTTATGTTCAAAAAAAAATGTAAGGTTAATTTAAATTGTTTGTTGCAG PhaseCut124: +Start +End FragmentLength FragmentNumber 2675 2771 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TGACTTTTTTAAATATGTTTGACC 2675 + 0 0 0.44 0.2 0.74 0 0 0 0 0.33 0 CCGTTCGTCTTATTCAAAAAATTT 2697 - 8.49 2.21 8.96 3.05 2.48 0 0 0 6.24 2.96 3.74 AAGTAATTATTAATTATTTTCATA 2721 - 0 0 0 0 0.25 0 0 0 0 0 0 ATTTGATTCATTGTTAAATATACT 2747 + 3.55 0.44 2.4 0.81 2.98 0 0 0 5.14 0 1.17 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G20040 7315 LOC_OS06G20040.1-1 osa-miR2123c 2663 2684 LOC_OS06G20040 7315 LOC_OS06G20040.1-1 osa-miR2123b 2663 2684 LOC_OS06G20040 7315 LOC_OS06G20040.1-1 osa-miR2123a 2663 2684 >LOC_OS06G30320.1-9 GTTTGAATTCTATTTATTTTGGTGCTGGTGATGGGGAAGAAATATATATACTCTTGTCCTTTCTAAAACACAGATTCATGGATAGGTAGCATCATAGCAAATTTTTCTTCCGTTATTTTTTGCTTACATTACTTATTGTTGGTCAGTGTTTCACCATTGAAATGCTTATTATTACTCATAAATAACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTCAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTTATGTACAGCTATACCACATAACCATGCTGATTACTGACAATGCATTTTATCATGTACTCCAATGCCGATTATAATGTATAATAGAAGAACATTATACAGTCTTGCATATGGTAAGCACCATTTTATTAATGTGGAGGCAGCAGTGACCAACATGTTTAATTCATGGCTTATGGCGGTCCACTTTGTGTCTTCCATCAACAATACACTTTCAGAATGTTTTCGTGTTGTCATTTTTTGGTAAATCGAATGGTGGTTATGTCTAAGATAGCTGTTGCAAAGTTTTCAAGTAACTTAAGAACACAACCTGATTTCTGTCTCTATCCAG PhaseCut20: +Start +End FragmentLength FragmentNumber 4975 5047 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 4973 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 4997 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 4999 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 TTCAATGCTAGAATGACTTACATT 5023 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 PhaseCut21: +Start +End FragmentLength FragmentNumber 4976 5024 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 4974 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 4998 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 5000 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 PhaseCut30: +Start +End FragmentLength FragmentNumber 4981 5023 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 4979 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 5000 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 5002 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 LOC_OS06G30320 6837 LOC_OS06G30320.1-9 osa-miR1436 4967 4987 >LOC_OS06G30390.1-3 GTATGCCAGACTTGTTTGTAGCTTGTTGAAATATATCAAATCATAAATGTCCTGCTACCTACTCTGTATTGTTGAAGCATTGTTTTTTGACTTCGTTGGTGAATAAGCTGCTCATTTACCTTACCTTGTGTTCTCTTTTTTTTGGGTCTTACACAGTATATTCTGAAAATGATTAGCTAGGTAGGATACATTATGCACTTGCATGCTACTGAGACAACTGCTATTTTTGTATTAATTTGAAGGTCTGTAGTTCTTTCAACAGAAGTTGCTATAATTCTTAAATCTCAATACTCCACATAGTTTGCTAGGATGAATTTAATTTAAAGTTTTATTTATCCTTCTAGCTACCTTCTATTAATTTATCAACTCCAGTTTCATATGATATCTGATGTCATGGTTCAAGAAGGCACTAGGCGCTAGAGGGTCAGCAGCTCTGGCACCTAGGACCAACATGGCTTGTAAATACCAAGCAATTAGCGATAAAATTACATAAAAGTTAACCATTGACCACTAAAATAGCAGGACAAGAGACCCCAAGGTTAGTTAGCCACCTAGTGCACCATCTAATGCCTAATCTGGGTGGCTACTTGGTGTCTCGCGCCTAATAGGTGCATAGGGTCGATTTTTAGAAATGTGATATTGCTCTTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTTCACATTCATATTAATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATGAATATGAATATAGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTACATTTGTAAATTTTGTCTTTAAGTTTGATCTGCAGTTTCATTGAATAATAATTGGTCCATTCTTGTGGAGTATCATTTGACTAGTGATTGATCAAAACACAATAAATAAGCTTGACCGCTTGGATTATTTTTAATGATACCATTACTTTCAACATATGACCAAGTGATTTAATTCTTACAAATGTTATCCAAAGATATTCTCATCAACTTCTGTGCTTGATCAG PhaseCut37: +Start +End FragmentLength FragmentNumber 1925 1997 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1923 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTTCACATTCATATTAAT 1947 - 0.2 0 0 0 0.25 0 0 0 0 0 0.7 GTTAATGAATCTAGACATATATAT 1971 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1973 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G30390 6709 LOC_OS06G30390.1-3 osa-miR1436 1916 1936 LOC_OS06G30390 6709 LOC_OS06G30390.1-3 osa-miR1436 1916 1936 >LOC_OS06G33320.1-4 GTAAGTATCTCTTTAAATTCTAATCATTTTAAATTCTGCAAAAGCAAATTAATCTAGATTATTTCGGTAGTCAAGGCTAGCTCCTGAACTGCAGTTAATATGACAGATGCTATTGCTATAATCTTGTTTGCGATGCCTCTTAATTCCTGTGGTGATACAACTTAATCCTGGACCATTTTTTTTAACAACATAGGATCATATAAATCTATTTCCAAGGAAACTTATTCTACAAATCCAATGACATCATGGAAAATATGTTAATGGATTGTGCTCACCATTAGCTCTTTTTTAGAGTCATCTATTTGGACACACAGTGATGTATATGGGTTATATAGATTGTTAGATTATAATCATAATGCCATGTTATGCTACAGCTACACCCATCTGCCCAGTATAATTTCTAAACCTTTCACAAAAGAATACAGCCTAACAACAGTTGAGTTGGTCAGAAGTAATTGTGGGCTTGTGGCACTACATTTTTTTAATTTGATCAACATTCCCTAAAATATGTCCAGGAATCAGGGTGGTAAAAATAGCAAGATTTGTAAGTGTTAGAAGGATTGGGAATCTTGTTGTGAAGTAATGCCCTACTACATTTCATCTTTCTTATTTTTTGTGGCCCTATTCTTTTTTTCATATTAATATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATATTAATGAATCTAAGACATATATATCCATCTAGATTCATTAACATCCATATGAATGTGGGAAATACTAGAATGACTTATATTGTGAAACGGAGGAAGTACGTCATTATGGTGAACTAGTGAATAGAAATGATAGAAAAGCATTGGCCTCAGATCTATAACGTGCCTGGTGTCTAGTGCCACCACCAGTAGGCAATTCCAAAATCATAGTTATGCATAGTTTCAGAAATCCTTTTGCAAAAATATGTCATCAATATCAGAGCTACATTAGTCGACTATCCTTGCGACTAAACAAGTGTTGTGAAGATAATTCATTTCATCTCCAGTTGCCTTTATGTACTGCAAAATCCTGGTACACAGGATACTGAATCTCTGATACTCTTTTCAAGGATTGAATTTCTGCATTAGTCTTGGAACTACATTATGTTCTTTATTTGTTGAATTGGTGTGGTTTTTCTACTCTGGCCCACACGGCCATAACCCTTTTTTTTCTGAATGGTTTGTGCTATTTGAATCTGTTATGTAACTATTCTGACGATTGATTACAATTACAG PhaseCut41: +Start +End FragmentLength FragmentNumber 4659 4707 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 4657 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 4681 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATA 4683 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G33320 5745 LOC_OS06G33320.1-4 osa-miR1436 4651 4671 LOC_OS06G33320 5745 LOC_OS06G33320.1-4 osa-miR1436 4651 4671 >LOC_OS06G34040.1-2 GTGAGTGGAGTTGCCCGCCCACCCCGCCGCACGGCTCGTCAGTAGTCGCGTCCCGTGTTAACTGTACATGGTTGTTTCGTGTTTGGGGAACCCACAAATTGGATGGGGGAGAATGGGTGGTTTTGAGTCGCTTACAACGCTGACCAAGTGAAATTAATTGCGTTTCCTTCGAAATCATTTATACCTGACCTGAGCACAAGTTTGTGAATTGTATGCGAGCAAACTAGTGCTCTGTTGTAGTATTTTGATGTTGTGATAAAACAATCAAAGTATTGCGTATTTGGTTATAAGACAAGGTCACGAGGGCACTATGTGAGTGATAATAAGTACTCCCTCCGTTTCACAATTTAAGTCATTCGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATTTATCTAGATTCATTAACATCAATATGGATATGGAAAATGTTAGAATGACTTACATTGTGAAACGGAGGAAGTATGATAGTTTATAACCCACTGAGCATGTCAAATTGACAATTGAATTCTATTAGTGCTTTCCTGAATGGGGAGGGTAAATGCCACTTCTCAGAAGCTGCAGGTAAGAAATTTCCGTGTTTCTTAGCTTTGCTTAAGTGTACTTCTTCATGTTAAATGTAAATGTGCTGTCTCCTGCTATCATCAATACTAAAAACATCAGGAGCAGTAATTTAATGACTGAGTTTTTTTAATGGTGGATGCCGTTGAGGTGAATGGATCATGTTTATAAAGGACATAGCTGGTGAGGCATTCTCAGGTCTCAGCTATGGAACACTTAGGATTTAATGATACCTAATGTTAAAGGCATGTATGGTTTGCTGAAGCTAGCAAGCAGAATTCAATACTAATATTGGTTTATTGAAGCTTTATGTGCTTGATAGCATTCATATCTGTAGCCCTGAGTCACTGACTGATAAAACATGCTCCAGCCATCTCAAACTTGATTGTCCCAGCAATTTTGGCCAAACAGATTAATGTGCATTCCTTTTCCTCAATATTTCTTTTTGGTGTACAATGTACATGTATGTTATTGTCAGTCATGCTACTCATTTGTAACTCCTGCAGTTCTGTTTTGCGCTACAAGTGTCTAAGGGGGTCCAAAAGCTTGTCCAGAAAAAAAAGAATTGGTTTGGTCTATTATCCCCCCTGCTTATATCTGACATTTTGATCCATTTGGGTTGTGTTTTTTTTAG PhaseCut56: +Start +End FragmentLength FragmentNumber 907 979 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 907 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATTTATCTAGATTCAT 929 - 1.78 0.44 3.06 0.61 3.72 0 0 0 6.98 1.48 24.78 ACATCAATATGGATATGGAAAATG 955 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G34040 5137 LOC_OS06G34040.1-2 osa-miR446 892 915 >LOC_OS06G45280.1-3 GTAAGCTGACCCTTTCCTTCTTGACAGTTATCACTCCCACCTACTGAATGGCCGTTGTCCATGGCAGCAGAACCTGCAACATGTTTATTGTTTTTGCATTTTCAAAAGTAAAAAGGAAAATGGTCAGTTTGGTGCACGCTGCATGAACAAAAACACTAATTTATTTTCAACAAGATGAGCAGATCTATCAGTAGAATTAATATAAATGCATTCACACTTATATTTCTTTCAGTGCTCGATTTACTGGTGCAATTTAATCTAATGAGTAGTGACCACTATATACAATTTAGTTGTATCTGTGTACCCGTTCCCTCCATGTAATTTTCAAAAATAAAGGATTTTCTTTTGAAACGATAATGGTTAGCATATGTTTTGAAGTTCTCCCAAGTCCCAACTAGCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATGTATATCTATCTAGATTCATTAACATCAATATGTATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTTAATTTACCGGCCGTATCATCAAGTTGGCCAGTTGATTTTGTCTGAGTTGAACTGTTTAGTTGATTCTACAATCTGCATGCACATGCTAACTACGCTACTAGTGAAAAAAGAAGAAACGATTTTCTTGCTGCATGGCTTGCTCACCTTTGATTGATCTATTGAGAGAACATGTATTTTTCCATGCTAAAGGACACTTTTGTTGATTTATCTTCTTGCTCGTATGATAATTGATAACAG PhaseCut60: +Start +End FragmentLength FragmentNumber 2784 2832 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2782 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2806 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2808 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G45280 5430 LOC_OS06G45280.1-3 osa-miR1436 2775 2795 LOC_OS06G45280 5430 LOC_OS06G45280.1-3 osa-miR1436 2775 2795 PhaseCut82: +Start +End FragmentLength FragmentNumber 2789 2915 21 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2787 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 2808 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 2810 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAGACATGTAT 2831 + 0.39 0 0.44 0.41 0.5 0 0 8.48 0 0 0 ATATCTATCTAGATTCATTAA 2850 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 TCAATATGTATGTGGGAAATG 2873 + 0 0 0 0 0 0 0 0 0 0 0 CTAGAATGACTTACATTGTGA 2894 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G45280 5430 LOC_OS06G45280.1-3 osa-miR1436 2775 2795 LOC_OS06G45280 5430 LOC_OS06G45280.1-3 osa-miR1436 2775 2795 >LOC_OS06G47530.1-5 GTAAGTTGCACACAAGACCTTTATTTTATTTTTTGCAATCAGACCTAATACAGTTTCTAATAAATATGCTTGCGAATGTAAAGCAACTCTTACCAAAGGGGAGTTGGATATCACTTGAATGTTGCTATGCTTCTGATAACAACTGATTAGAAACTATGTTAATTTGATGTAGAACAGCATGTAACAATTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGCACATACATATGTTTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACTATTTTCTCTCAAG PhaseCut44: +Start +End FragmentLength FragmentNumber 2613 2661 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2611 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2635 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2637 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G47530 4927 LOC_OS06G47530.1-5 osa-miR1436 2604 2624 LOC_OS06G47530 4927 LOC_OS06G47530.1-5 osa-miR1436 2604 2624 PhaseCut53: +Start +End FragmentLength FragmentNumber 2618 2660 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2616 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 2637 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 2639 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS06G47530 4927 LOC_OS06G47530.1-5 osa-miR1436 2604 2624 LOC_OS06G47530 4927 LOC_OS06G47530.1-5 osa-miR1436 2604 2624 >LOC_OS07G06740.1-7 GTAACTGCTCAAATCTTGCATTTTCTTTTCAGTTGATAAAGTGAACAGCCGGAAGGCCCTAAACTTTGGGATCCACGTATTAGCATGAATTAGACTAATTAGAGGACCTATATTTTGAATTGCTGAAGCTCTTCATATGCTCATTGCTACTAGTGGTAGGATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGATTTACATTGTGAAACGGAGGTAGTAGGTTAGTGGCACCATACAGTAACAGATCAGTATAAAATCGTGGGCTGTCAGAGCATATTTCATTTGAAGTAGTCAGGAGAAATACTCAGGACTCAAGATCTTTGTCAAGTTCCCGATAATTATGATGCTATCTTGATTGTTTCTGCTACTTCCTTCCCAAATCCCAACTTAGCATTTCATTCTCTTGCGTTTTCGAGAAAAAAAAAACCTTAGCATTTCATTCACATTTTATTATTCCCTAAGATTTTGAGTTGCTTGTTTATGGGTTTATTTTCGATGAATAAGCTTACTGTGAGGTGGAAGAAGCAAACATTCTGTTATTGTTCATGTCCACTAACATTTTCTGCTATACCTTCACTACCTTGAAGTGAGAGCTTATGGTTCAAATATGAATCGAACTGAACATAGGAAAAAGGCTTTGATAGTTTGTTGTGTTAGCTTAATTATAACTCCTTTAGTTTACTAAATACTGATTGCCTTTTGATCTAGTGCATTGGTGGATATTACACTTTGATACATAATAATAATATGGTTATCCCTGCAAGAAAATTAATATGGTTATCATTTACTCTCTCTCTCTCTCTCTTTATTTTTGCAGGAATAACTACCCCTGAATGTAGAATGGAGTGCTATATTAATATGGTTATCATTTACTCTCTCTCTCTCTCTCTCTCTTTATTTTTGCAG PhaseCut80: +Start +End FragmentLength FragmentNumber 3492 3588 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 3490 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 3514 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 3516 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATATCTAT 3540 + 0 0 0.22 0 0 0 0 0 0 0 0 ATCTAGATTCATTAACATCAATAT 3562 - 6.71 2.66 8.74 2.44 10.18 0 0 0 16.52 4.11 3.04 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.1-7 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.1-7 osa-miR1436 3479 3499 PhaseCut81: +Start +End FragmentLength FragmentNumber 3493 3577 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3491 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3512 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3514 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 3533 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATATCTATCTAGATTCATT 3554 - 0 0 0.44 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.1-7 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.1-7 osa-miR1436 3479 3499 PhaseCut110: +Start +End FragmentLength FragmentNumber 3526 3622 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 3526 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATATCTATCTAGATTC 3548 - 0 0 0.22 0 0 0 0 0 0 0.49 0 ATTAACATCAATATGAATGTGGGA 3572 - 0 0 0 0 0.25 0 0 0 0 0 0 TAACATCAATATGAATGTGGGAAA 3574 + 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TGCTAGAATGATTTACATTGTGAA 3598 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.1-7 osa-miR446 3511 3534 >LOC_OS07G06740.2-7 GTAACTGCTCAAATCTTGCATTTTCTTTTCAGTTGATAAAGTGAACAGCCGGAAGGCCCTAAACTTTGGGATCCACGTATTAGCATGAATTAGACTAATTAGAGGACCTATATTTTGAATTGCTGAAGCTCTTCATATGCTCATTGCTACTAGTGGTAGGATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGATTTACATTGTGAAACGGAGGTAGTAGGTTAGTGGCACCATACAGTAACAGATCAGTATAAAATCGTGGGCTGTCAGAGCATATTTCATTTGAAGTAGTCAGGAGAAATACTCAGGACTCAAGATCTTTGTCAAGTTCCCGATAATTATGATGCTATCTTGATTGTTTCTGCTACTTCCTTCCCAAATCCCAACTTAGCATTTCATTCTCTTGCGTTTTCGAGAAAAAAAAAACCTTAGCATTTCATTCACATTTTATTATTCCCTAAGATTTTGAGTTGCTTGTTTATGGGTTTATTTTCGATGAATAAGCTTACTGTGAGGTGGAAGAAGCAAACATTCTGTTATTGTTCATGTCCACTAACATTTTCTGCTATACCTTCACTACCTTGAAGTGAGAGCTTATGGTTCAAATATGAATCGAACTGAACATAGGAAAAAGGCTTTGATAGTTTGTTGTGTTAGCTTAATTATAACTCCTTTAGTTTACTAAATACTGATTGCCTTTTGATCTAGTGCATTGGTGGATATTACACTTTGATACATAATAATAATATGGTTATCCCTGCAAGAAAATTAATATGGTTATCATTTACTCTCTCTCTCTCTCTCTTTATTTTTGCAG PhaseCut78: +Start +End FragmentLength FragmentNumber 3492 3588 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 3490 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 3514 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 3516 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATATCTAT 3540 + 0 0 0.22 0 0 0 0 0 0 0 0 ATCTAGATTCATTAACATCAATAT 3562 - 6.71 2.66 8.74 2.44 10.18 0 0 0 16.52 4.11 3.04 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.2-7 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.2-7 osa-miR1436 3479 3499 PhaseCut82: +Start +End FragmentLength FragmentNumber 3493 3577 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3491 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3512 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3514 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 3533 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATATCTATCTAGATTCATT 3554 - 0 0 0.44 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.2-7 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.2-7 osa-miR1436 3479 3499 PhaseCut110: +Start +End FragmentLength FragmentNumber 3526 3622 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 3526 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATATCTATCTAGATTC 3548 - 0 0 0.22 0 0 0 0 0 0 0.49 0 ATTAACATCAATATGAATGTGGGA 3572 - 0 0 0 0 0.25 0 0 0 0 0 0 TAACATCAATATGAATGTGGGAAA 3574 + 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TGCTAGAATGATTTACATTGTGAA 3598 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.2-7 osa-miR446 3511 3534 >LOC_OS07G06740.3-6 GTAACTGCTCAAATCTTGCATTTTCTTTTCAGTTGATAAAGTGAACAGCCGGAAGGCCCTAAACTTTGGGATCCACGTATTAGCATGAATTAGACTAATTAGAGGACCTATATTTTGAATTGCTGAAGCTCTTCATATGCTCATTGCTACTAGTGGTAGGATATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGATTTACATTGTGAAACGGAGGTAGTAGGTTAGTGGCACCATACAGTAACAGATCAGTATAAAATCGTGGGCTGTCAGAGCATATTTCATTTGAAGTAGTCAGGAGAAATACTCAGGACTCAAGATCTTTGTCAAGTTCCCGATAATTATGATGCTATCTTGATTGTTTCTGCTACTTCCTTCCCAAATCCCAACTTAGCATTTCATTCTCTTGCGTTTTCGAGAAAAAAAAAACCTTAGCATTTCATTCACATTTTATTATTCCCTAAGATTTTGAGTTGCTTGTTTATGGGTTTATTTTCGATGAATAAGCTTACTGTGAGGTGGAAGAAGCAAACATTCTGTTATTGTTCATGTCCACTAACATTTTCTGCTATACCTTCACTACCTTGAAGTGAGAGCTTATGGTTCAAATATGAATCGAACTGAACATAGGAAAAAGGCTTTGATAGTTTGTTGTGTTAGCTTAATTATAACTCCTTTAGTTTACTAAATACTGATTGCCTTTTGATCTAGTGCATTGGTGGATATTACACTTTGATACATAATAATAATATGGTTATCCCTGCAAGAAAATTAATATGGTTATCATTTACTCTCTCTCTCTCTCTCTTTATTTTTGCAGGAATAACTACCCCTGAATGTAGAATGGAGTGCTATATTAATATGGTTATCATTTACTCTCTCTCTCTCTCTCTCTCTTTATTTTTGCAG PhaseCut80: +Start +End FragmentLength FragmentNumber 3492 3588 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTCACAATGTAAGTCATTCTAGCA 3490 - 0.2 0 0.66 0 0 0 0 0 0 0.49 0 TTTCCCACATTCATATTGATGTTA 3514 - 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TCCCACATTCATATTGATGTTAAT 3516 + 0 0 0 0 0.25 0 0 0 0 0 0 GAATCTAGACATATATATATCTAT 3540 + 0 0 0.22 0 0 0 0 0 0 0 0 ATCTAGATTCATTAACATCAATAT 3562 - 6.71 2.66 8.74 2.44 10.18 0 0 0 16.52 4.11 3.04 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.3-6 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.3-6 osa-miR1436 3479 3499 PhaseCut81: +Start +End FragmentLength FragmentNumber 3493 3577 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3491 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3512 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3514 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 3533 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATATCTATCTAGATTCATT 3554 - 0 0 0.44 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.3-6 osa-miR1436 3479 3499 LOC_OS07G06740 4815 LOC_OS07G06740.3-6 osa-miR1436 3479 3499 PhaseCut110: +Start +End FragmentLength FragmentNumber 3526 3622 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATATTGATGTTAATGAATCTAGAC 3526 + 12.84 2.88 12.67 2.44 5.71 0 0 0 7.71 1.81 0 ACATATATATATCTATCTAGATTC 3548 - 0 0 0.22 0 0 0 0 0 0 0.49 0 ATTAACATCAATATGAATGTGGGA 3572 - 0 0 0 0 0.25 0 0 0 0 0 0 TAACATCAATATGAATGTGGGAAA 3574 + 9.87 3.32 5.68 1.02 2.98 0 0 0 0 2.47 0 TGCTAGAATGATTTACATTGTGAA 3598 + 0 0 0 0 0.5 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G06740 4815 LOC_OS07G06740.3-6 osa-miR446 3511 3534 >LOC_OS07G18120.1-1 GTACGGTACCATGTATTACTAGTACAGTAGTACTACCACCTGTGTTATTATACGTTGTTACTACGTATCTGTGTTTAGTTGCATGTGCTTCATTATGTGCAATTAATTAAGCTGTGCAACCTGACTGTGTGGCTTGCTCGATCGATCGATCTCTACGTCCTCTCTAGCTCTGCTGCTATACAAAATCTCTCTGATGACTTTGTGTCTATCTGGTTCTTCTTTAATTACCTATCAAGACGCACCCCGCAAATGGATCAAACAGATGAAGCCGAGAGACAAATTAATCTGGTGAACTTAATTTAATTTATCATTAAGAGTTAAATTGGTGAAAGTGCAAATCTAGCTTCATTTACCGCTGTATCGAAGAGATACTTCCTCAGCAAAACCAGCTAACTTCTTTAACTGATTACGTAGGCCTTGTTTACTTCCTAAAAAAAATTATCTAAATACATCACATCGAATCTTTAGACACATACATAAAGCATTAAATATATATTAAAAAAACTAATTGCACAATTTGTATGGAAATCACTAGACGAATCTTTTGACTCTAATTAGTACATGATTAGTCATAAATGCTACAATAACTCAAATGTGTTAATGATAAATTAATTAGGCTTAATAAATTCGTCTCGCGGTTTTCGGGCGAGTTATGAAATTAGTTTTTTTATTCTTGTCCGAAAATCTGGTCAAACGTCCGATTTGACCCCTAAAAATTTTTTTTCGCGAACTAAACACACCCTTAGAGCAGGTACAATAATAGACTATTAGCCAGCTATAAACATATTTTAATGAGATAAAAGATGAGAGAGAAGAGCAGCGGGCTACAGATCTGTAGCCAGCTGCAGCACGGACTCCAAGACGTAATGTGGGTATGACAGGTGAGACCATATATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTAGATTGACTATAGGTGAATTGAAGCTAGTAGTGGGCTGTACTATTGAACTTGCTAAGAGGTACAATAGCAGACTATAAGACAGCTATAAACATATTTTAAATAGATAAAAAAAAGAGAGAATAGCAGCGGGCTACAGATCTGTAGCCAGTTGCAGCACGGACTCCAAGACGTAATGTGTGTATGACAGGTGGATCAGATATTAATAGTACAGTATGCAAGTATTGTATGAATTGATTATCACATTGGCTATAAAAAATTTGGAGCTAGTAGTTGGCTATACTATTAAACTTGCTCTTAGCTTCTCGTTCCGTACGCTTGTGTTCATCATCTCAGGACCCATTTCATTTATGTAACTCGATCGTGATGCCACTCGATCCTAACAACAACAGAAATGGGTCCTCATCCCAATTAACATGCGCATATGGGCATTCTTAATTATTTGCATTATATATGCACTTAAAAATCTGTATCAACCCGTAATATCTAATTATTTACGTGTCAAATTGAACTTGTTTGTTGGAACTCATGCCACCCTATATTTGTAAAATTTGAGATATGCCACCCGTATCTCAATGACATGTAGGACCCACATGAGTCAATGACATATGGGTCAGGGTGGCATATCACAAATTTTGCAAAATTTGTGTGGCATAGTTCAAATTTTCCAAGATAGGTATTATGGTCTCATTTCTATTAAGATTTTCGTGGCACGCTTTTCAAACTGCTAAATGGTACGTTTCGTGTGAAAATTTTCTATATGAAAGTTGCTCTAAAATATCATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATATAGACATATATCTTTATCTAGATTCATTAACAACAATATAAATGTGAGAAATGTTAGAATGACTTAAATCGTGAAACGGAGGAAGTATTAATCTATTTTTTAGGTTTGTAATAATTAAAACACAATCAATCATACGTTAATACCACCTTGTTTTACGTAAAAAACTTCATCTTCATTTTCAGAAGAAAAGGACACCACCAATAATTAGGAAAAAAAAAGTTCTGGCTGATCTAAAGCTGATTGTATTTTGTCGCACAAGGGGCAAACAAAAGCAAATTCGATCAGTTGGGACAGCTTGAGATTGGTCATCAGATGCAATTTTTTCTTTGCAAACGGATCCAGAGGTAACGTATCATTTGTGATCGTGCATGTGACATGCTCCTGTGCCATGTGTGTGATGTGTCGATAATGGCCCTTTTTCCGTTGGACTTTCAGTGCATGTCCAGTCAAACAGAGCAGGTGTTCAGCTTCCTTGTAAAACATATACTCCTAGTTTACACTTGGTTGATATCCTTGGTCGTACATGTCTAGGGGTGGAAAAAAAGCTCGGGCTCGTGAGCTCAGCTCGGGCTTGGCTCGAGCTCGGTTGGCTTGGCTCGGCTCGTAAGCCAAACGAGCTAAGCCCAAGCCTCCTTTTTAGCTTGTTGCTGAAATGAGCCAAGTCGAGCTAGCTCGCGAGCCGCTTGTTTTGGCTCGCGAGCCTAGGCCATCGTATATTTATATCAATTATTTTACTTTATATGGTATTATTATTTTTCAACTTGAAATTTATCATTAAGAGTTTGAAGAATTGAATATATAAACTTATTTAAATTTTATAGGTTGATGATTTGTTTTTACTTTTTTTAATAATTATAAAATATATATGAAGAGGTATTTCAACAGGAAGGCTTGCAAGCCAGCTCGAGCTGGCTCGAGCCAGGAAACAAGCCGAGCCGAGCTCAAGTTTTAGCTTGTTTCCCTAACCAAGCCGAGCCAAGCCAAGCCTAGTTTTTTGCGAGCCACTGCGAGCCGAGCCGAGCTGGCTTGGCTCGTTTCCACCCCTATACATGTCGCCGTTAATCTGGAGGTCCCTTTCAATATTACTTTCAAAAGCTGCAACTTTAACCCGTTTCTCTTGCGTCCATGTGTCTCTGAGTCAGTTACAGAATTGGGCACAAGTTTTTCCACTTGCGCAAAAGCGAACTACACTGATCTATTTCTATTTCAGGTCCTGTTCTTTTTCCAGCTTATTTACAATATTAACAAAACGAATTATTTAATTTCTTGAAGTCAACATCCAGACTTAGTGACCCCTCTCTGATAAGGTTTGAAAGTTTCCAAAATGAAAAAAAAAGATATATGTTTCCAATTAATTTTTGTTTCATTGATTAGACCCACTTATTTTAAACAATTTGTTGTCGGTGGAGTGTTAGTGTGTACAAGCTATCAACGTGTGGTGGCGTGTTAATTAATTTGTAATTTATTTTTCTGATTATAGCTTCTTACTTATGGTTGTAGTCTTCCAGTTTTTTTCTACTATATGAATATGATATATCACACGATTGTTCATAAAACCCAATTTTTAAGTATATTTTCTAAAATATGTAATTCATCTAGATAGCGATAATAATCCACAAAATAATCTAAGATCAAACCGGGCCAAATGTAATGGCCATTAAAAATTTAAAAATATATACTACTCCATACTCATAAAGGAAATCACTTAGGACAATGTTTAAGTCAAACCTTAGAAATATAAATCATGAATAACTCTCAAGTTGTTAAGTTTGAAAATGTAAAAATTATATGTATAGATTTGTCTTGAAAAGTACTTTCATAAAAGTATACATATATCACTTTTCAATAAATATTTTTGTAGAAATAAGAAGTTAAAGTTGTGTTTTGGAGACCGTGTCGCTGTCCTAAACGACTTCCTTTACGAATATGGAGGGAGTATCTATCAGACGCGCACACGCACGCGCAAGCACCGTACTCTTAGAAAAAGTATGACAGATCTGAATTGATTAAGTGTGCAATTTGCCATACATATACATGAAGGTTATAAATAACGCTCAAAGGGGAAACTAGCTACGTATGTTGTGATGCTACTCTCTGGACAACTCCAAACACAAAAGGTCGATCGTCGCCGTAAACACAGAGGTAGCTAGCAGATGTGACAGGCTCCTATGTTTGTGCGTGGTGAACTGGTGCGTGGTAGGCTCCTATATTTGTGTCATTGTGTGTCGTGGTCGGTATGATCCTTTAATTCAACTTTTGTGGCTGTATCCCCACCTTTCCCATCTCATCTCTCTCGTTTTCCATACACACACTTTCTAAAATACTAAACAGTATGTGTTTACTATTCTATATGAAAGTTGCTTTAAAAATCATATTAATCTATTTTTAAAGATTATTTTAGCCACCAAATCATGCACTAACCGCTGCTCTGTTTTACGTGTGGGGAGTGAGGGTTCTCCCGAACTCAGCCACATGTATGTATAGATGTAGATCAGCCTCCTTTCTTGATTACACACGATTCCGATCCGTCGGTTATCTAGCCTCCCCACCATGTGACCCAGGTAATATGGGTCACATAGGTCAAATGTGTGTCCGTTTATCCGATGTGACACGCCAAAACTTTTCACCCGTAGATCTAAACATGTTTGGATGGTTTACTACAGTGATGCTACAGTAATCATCCGCTAACCATGAATTAATATATCTCGTTAGAATCGTCTCGCAAAATAGCCTAGGGGTTATGAAATGGGTTTTGTCAGTAATTTACGTTTAATACTCTTAAATAGTAAGATTCTGAAGAGCTATTTAATAGTCCGGAGGATCCAAATGCCATATAGCCTAAATCGCATTTGGGTTATCTGAAACGTGCCAATGTTTCATCCATCAGTCAGAGAGAAAACTCGAACATAATGATTAGAGAACTGCCGAAGATTTGAAATAGACACAATAATGACGGCTCGTCTCTTCCCGGACAAAGTCACATTGACATTCATGAGAACCGTCGAAGATTTCTTTTTGTTTTTGTTTTTAGCGGGGGGAAGATTTAACTAGTACTATATCAAATTAGCTATTAGCTGGTGACATGTCCATTTCACTTTAATAAAACGGAAGTACAATGTACTACGGATATATCACCCTACATGTGTGCTAAACAGCTGGACCTGTTCATATAGAAAGGATAAAGAAATATATATAGTTTTCGAATTGTTTGTTTCAAGGGTAGTTTGAGGGAGAGAGATATGCTCTGAAATTATGCATAGTAGTACTCAGTCATAAATATTTATCATTTAGAAAATTTTAAAACTTTGACCCATAGTTTTATATTAAACCATCAATTTATATCAGACGAATAAATTTATGACATATAATTGGTTTGCGATATTATGCACAAGCTTTCAAGCAAATACCACATATATCATTTTTTTTCGTTTAAACTTATAAAAACTATTGACGATCAAATTTTAAAAATACAACTAATTAAATTTTATTCGAAACGTCAAATGCTTATGCCGAAAGGGACTAGTAGTAAATTAGTAATAGGGATTCTTTTATGCACCAAAGTGCATGTGCAATTCAAATTCAAATAGACCAAAAAAAAAAAAACGTCAACAGCCCAACTACAGCTGCTTCCTTTAAGCAACAGGCCCATATTGGCCTTTCAAGGGAAAAGGCCCAGCAAAAATGTCCGACTGCAACTCCGGTGGCGGGGAACGGCGGCCGAACGCACGGGCGACGGACGCGCCGCCGGTGAGGGCGCCCTCGGGCGGCGCCTTCCGCTGCCGTCTGCTGCTCCGCTCCCTCCTTCCCTGCTCCCAACATTCGCGAGTTCAGTGAGGTAATCGACGAGACCATTTCGCTTGGTAACCAGGCCGGAATTCTACATGCAGTTTGGGGGCGGTTTTTTGCTTGGATTTTGGGGGTGTTGCTTAGAGGAAATAGAAATTGAGGGCCTATCAGAATAGAAATTGCTGTTTGCAGCCTTATCAAATTTTGGAATTGTTGATTTCTTAGTTTGCTGCTTTAACAAATTTTTTTTTAAAACCCCGGCGGGGTGTATTTATATTAAAGTAGGGGGAAAAACTGTACAATAGCCCAGGGGTTAGGAGATTATAATAAGAAAGGAAAAAGAAAGCGGGTGGAGGGGGGTGCAGCTACAAAGGAGGGGTGCAGCTGATGAGTCTAATTTATGTAATGTCGGTTATGCTTCCATGGTGCTTTAACAAAATTTAGGCTGTGTTAAATCTGGGTTGTTCAGAATATGTGCTTAGTTTGTTGTCTTGCCAAACTTTGATAGTGCCAAAATTTAGTAACTTTACAAATGACAATTAGCCAAACACACATTTTGAGAAATGTAATATTTGGTGGAAAATGTCAGTTTGAGGGGCCTATTTTAATTTTTAATAGCCAGGGAGAGGATTGAGACTTGAGGGGAGCTCCCTGTGTAGAGAAATCGCAGTTTTTATTTGTTCTGCGGGGGAAATTTGCTGTTGTTCATCGTTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCATATTCATATTGATGTTAATGAAACTAAATAGATATATATGTCTAGATTCATTAACATTAATATTAATGTGAGAAATGCTAAAATGACCTACATTGTGAAACGGAGGGAGTACTTAAAAAATGTCTGTTTATATATTCCAATATTTTCATTTTCTCCAGCTAAATAGTGGATTGGTAACAACTATTAATTTCCATGATTAACCCCATCGGCACCGCAGAATTTGAAGTGAGAATACATCCATGGTTTGTGAGATGCTAACGGCCGTGGCTATTGTTTTCTTTTGTACAATTATTTTATTCTTTTGTGAGCTTTTCTTTTGGTTATCTTGGTTGATTGAAGTATTCAAATAGAAACGAGTGTTATTGTTCTAGTTCAGTGTTCTTCTGATTCATTTGTGCAATTTCCTGGACACCTGAGATGAATGGCAGTTTATAACATGTCATGGATTATTCATAGTTTCATAGTTGTGCCTTATTGCAG PhaseCut319: +Start +End FragmentLength FragmentNumber 2036 2084 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 2034 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 2058 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 2060 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G18120 13421 LOC_OS07G18120.1-1 osa-miR1436 2027 2047 PhaseCut330: +Start +End FragmentLength FragmentNumber 2041 2083 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 2039 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 2060 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 2062 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G18120 13421 LOC_OS07G18120.1-1 osa-miR1436 2027 2047 >LOC_OS07G35920.1-3 GTATGGTACCGCTGTTTTTACCTGGTTAAAAGTTTTACTATAGCTATGTACGTCAGCTTGCAGTCATGCACGGTTCTCATAGGGTGGTTAATTTCTACTCCCTCCATCCCAAAATATAAACACTTTTAGAATAGTACAGAGTCAAAATATTTTTAACTTTGACTATTAATAGCTAAAAAATAAAAATATCAATGATGTAAGAATAATATGACTAGATTTATCATTAAACAAACTATCATAATATGTAACTCTTTTTATTTAAACCATCTTATTTTTGTAAATATTTTTAGTCAAAGTAATATCTCAATGACCGTGTCAAAGTTCAAAAATACTTATATTTTAGGACAGAGTGAGTAGTATTTACTATCAGCTCCATGAATTTACTATTGCTCAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGTATGCGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGCACTTTTTTTTTTGAAACTGAACTCAGTACTTGATGCTGAAAGGGTTGGTCTCGTTGCAACGTGTGCTTTAATTTGTTTGCAGTGGCATTCCTGGCTTGGTAGTTGGTAGCGACCGTTTTTTTGACAAATTGACCCTTTTGGAAAACTTACTTCGAAACTAACCCCTGCCAAAAACTTCAACCAAAAATAGGCCGTCGCCTCAGCGCCAAACACATTGGCGCTGACGTTGGTCGTGTCAGCGCCAACGGGACTGGCGCTGACATTGTGCCACCGTGGCGGCCGGGCCGATCCCCTAGCTGACGTGGCAGCTACATCAGCGCCAACCGCTTCGGCGCGGAGGTGCCCAACCTCAGCGCCAACCGGACTGGCGCTGAGGTGGGACTTGGCCGCAACCCCCAGGCCCAGACCAGCAAGCCTCCTGGATGGCTTGCGGGCTGGGATCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCACCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCATCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGCCAACCTGGCGCTGAGGTGGAACTTGGCCGTTTCGGCCTTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCATCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTGGGCTGGGACCTCAGCGCCAGGTGCACTGGCGCTGAGTTTGGACATGTCAGCGCCATTTAGCATGGCGCTGACGTCCCAGCCCTGCTAAAACTTCAGCAAAACTTTGCACACAACACAGGCAAACATCAAATGACAGAAATTTACAGGCAGTAATATATCCAGAGAACCATACAAAACATACATCCATCCATCAATCCCAACATCATTCCATACATCCATAGAATCCATCAATACATCCATATATGAAGTCCATACATATAAGAAATAAAAACATCCCATCGATCCTCGTCTATACATCCAGTCGAGTCCATACATCCAGTCCATACATCCATCGAACCATGCATCAAGTCCATCCATCTATCCATCCATCCATTGAACCATGCACTCACCTCCTCCTACCTCTAGTGCGAGGACGAGGCACGTCGGGGGTGTACCTCCAGTCCTGCGAAGGAGCCCGCCGGCGTCGTGGTCGAGACGGGCCGGGCTGCGAGATATCCGGCTGTGACGACTCTGGTGCGTCCTCTAGCTGCGAGGGACCGAGCTCATCCGCCTCCTCTTCTCTGTCCTCATCCCCTTCTTCCTCCTCATCTCCTTCCTCCGCCTCTTTGTCTTGCTCGCCCTCCTCGTCACCCACCTCCCCTTCTTCATCCCCCTCTTGGTGGGCATGAGCATGTTCGACCACATCAGTCGACCTGCAGCCGAGCCTTGCTGCCAACTTCCGACATCGCTGCCGTAGTCTCTGCATAAAAAATAAGCCATGTTAAGTTATCGCTTTTGGAAGAAAACACCGTAGTTTCATCTCTTTCCAACGATTACCTGTAGGGCGTTGCGGAGGGTGCCGCCCTCTCCTTCGGAGCCAGGAGCCGTGCCTAGCGCCACTCCCGCGTCGTTGACGGTCCGCAAGAGCTCTCGAGCCTGTAGGATTGAAATGAAGTAAGTCACAACATATATGGCATTGAAATTGAAATAATATACAACATTAATGCTAGAAACGAACCACTCTGTCGCGAACAGGTCCCGTCTCGACCGTGGTACCTAGACGGGTACGAGTATCGTACTCGTTCTGCTCCTCAACATCCTCGGGGTCATCCGCTATGTCGGCTAGTGTCCAAGCCGGACGTAGGACAAGACAGTAGGTCCAACATGTTAGCAAGAAATTGAAATGTTATGAAACATAACATGCGTGAACTTACCTGTAGCAACCAAACACAGCCTGCTAGGTTCGCGTCCCCGCCTTGCCTTCGGCAAGCATCACAGAGTTGCCGGTACAACCAGGCTAGGGCAGCCGACCCCCAGCTGAAGGTACCCGCCTCGTCCCAGTCCGCGAGCAACGGCAGCCACATCCAAGAAGCCATGTCTCCACCAGAGTCAGGGAACAGAATACTGCCGAAGATGTACAGCACGTACGCCCTGCAGTATCGCTGTACTGTAGCCTCGTCTGCCTCAGCGGGACACTGACCGAAGTTGGCTCGCAACCAACTCAAAGGAACCCCTGATGTCTTCGTCTGCCTCTGACCATCAGGTGCCACTGGAGGCTCCAGACCAAGGTACTCCTCGACCCTCTCCCTCCAGTTCCCCGACGCTGTGTCACCTTGTCGGTGATATGGGACCGGGAGTATCATGACCAGAGGCTTGAGGCAGACGCAATCGCCCACGTGGCCTGGCACCTTCGGGGACGTCGGGCCCGAGGGTGAGGTGTCCGCCCTCCTCCTGATTTCCCCCGAGGGGGGGTCGGGTTGCGCTTGCCCCGGCCCCGAGGGCCGAGGCACCCCGACCCCTTAAGGAAGTCTGCGCCACATATATGGGATAAGTGAGCACAGCTGTGCTCACCTAACAGCATTTATTGCAGTCTGGTCAAGCGTGTCATGCTGCATGCAACGCAGTACAGCGCGTTCCTTTATCCGGTCTGTGACCAGTCACAGACCGGTCAGATCACGGGTTAGGTGGCGACTGGCGGTCTGACGCACGCCTTGCCCCATCCCGTCAAGACAAAAGTCTGTAGGCACTCGTCTCAAGCCGGAGCTAGCGTGTTATCTCTTAGAGATGGCACGTTAGCCCTGGTCAGATTTATACCAGGCTTCATCCTAACCATTACAGGCAAGGTGTTACACGAAGAAGGGCAAACATGCACGTTGTTAAGCTGACGCGTGGCGGACAAGAATGACCGGTCTGGCACTGGTCGCGTCATCGACAGACAGCCACGGTCCCGCGTCATCTCTGTCTTCGGGGGAGGTGGGGGTAGGTGTGGGCTGTCCCATCAGAAGGGCTCCCGGATGGAAACCGTACCGATCTCCGCCCATTAAAGAGAAAAAGAACAGTCCAGTTTGGAAAGAGAAAGGGGCATGTGGTATCCCCTTGAGATATAAAAGGAGGACCTTGCCCATTTAGAGAAGGGACTTTTTCCCTTTTGGAAGGCTGAGGGGAAAGGGAGTTAATCCTTTGTAACTTGTCCATACACAAATCCACAAAAACACAGGAGTAGGGTATTACGCTGAGCAGCGGCCCGAACCTGTATAGATCGCCGCCGTGTCTCGCGTTTTCTCCGAGCAAGCGATCTTTCCACATATAGAAAGAGCTTGAGATCTCACCCTAAGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCACGAGCTCCGTCATCTGGCGCGCCAGGTAGGGGGCTCAGCGTGTGTTTTCTGAGCTCTCATACTCTTCCGTGTGCGCCAAGTTTCCCTTGTTCTGCCTAATGGCCGAGCAAGCAAAGGCGCACGATCTCTCTCCGAGTGTGAGCGGCGACGACGGGGAACCAAATCCACGCCGTCGAGCTCGTACTCCCCCACCTCCTCCGCGCCAAAGCCCTAAGCAGGGGGAGGCGCTTGAGAGGGTCGACAAATCCGTGGCATCACCAGTCGCAGGTGATGCAGGAGAACGGCGAGATGGGGAGCGTCGCCTCCTCGTCTACGGCGACGGCAGCACGCCTCAGGGCGCGCTTCAGGTTGCTGGCGCGCTCCTACGACACCCGCCTGTCGTCCATGACCCGGAGTCTCCAGCCCAACGATGGCTGGAAGACGTGGCCAACTTGGTCATGACGGCTCAGCAGCGCTTGGGTGCTGGTGGACGGTCCGCCACCACCAAGACCTCCGGCGCCGCTACCACCGGCTCCGTGTCGTCAAGGCGGAGGGCGCGGCGAGCGGCGGCGGCTGCACGTCATTCGGCTGCTACTCCCTCGTCGACACCTTCGACTCGGAAGGATCAGCATGGGGAGCCGGATGCCCGCCTCAACATCGAGCGCCGGCGTAATAGCCGGCGTACCCCCCGTGCAACGGAGGGTGCCTCCTCGTCCAGAGTGTCACCTCGACATGGACGTGAGGACCAGCCCTCCGTGCCCCCGGCTGGTGGTGTTGGCTGTAGAGCCTTTGTGGCGAGTCTTCGGAATGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCACTGAGAAGTACGATGGGAGCGTCAACCCCACCGAGTTTCTCCAGGTCTATATGACCGGGATCGAGGCCGCTGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTAAAAGGACAGGCGCGGGGTTGGCTAATGAACCTGCCACCCGCGTCGGTCCACTCCTGGGAAGATTTGTGCCAACAGTTCACCATGAACTTCCAAGGCACATATCCGCGCCCAGGCGAAGAAGCGGACTTGCATGCAGTACAGCGAGGCGATGATGAGTCGCTTCGCTCGTACATTCAGCGGTTTTGCCAAGTCCGCAATACTATACCATGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGCGTGCGGCACAACCGCATGCTCGAAAAGATCGCTTCCAAAGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTTGCGGACCGAGTGGCTCGTAAGGAGGAAGCGTGGACATGGAACTCCTCCGGTTCCGGAGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCAGACAGGGCGGCGTGACAGGAGGAGGAAGAAGAGGTCGGACCGTTCCGGCGACGAGGGTCATGTCCTCGCCGTCGAGGGCGCTCCGCGGGCCACCCGAAAGGGGAGGCCTGCGAGCGACAAAAAGAAAGAGGCTGGTACTCCCAGCAGGGAGCGCCCCGCCGGCAGGTGGTGCTCCGTCCACAACACCTCCCTCCACGATCTCGCGGACTGTCGTGCAGTCAAAAACCTGGCTGAGCGAACGAGGAAGTGGGAGGAGGACAGGAGGCAGGAACGCCGTGAGGGCAAGTCCCCGGCGGTTCCTTCTGGCAAACGGCGAAGTGAGGCCAAGCAGAAGGCCCCCGCTGTTGACATCGATGATGGTGAAGATGACCTAGGTTTCCAAGAACCTGGGGCCACCATTGCCACCGTCGATGGAGGAGCGCGTGCTCACGTCTCTCGCCGGAGCTTCAAGGCTATGAAGCGAGAGCTTCTGGCCATGGCCCCTACTCATGAGGCGATGCGTCGGGCGCGGTGGTCAGAGGTTGCTCTCACTTTCGACCAGACCGACCACCCACCGTGCATTGCCCGGGGAGGGCAGGTTGCGATGGTAGTTTCCCCCACCATCTGCAACGTGAAGTTGGGACGTGTCCTCATAGATGGAGGAGCGGCTCTCAACATCCTTTCCCCCGCGGCCTTTGATGCTATCAAGGCCCCGGGGATGGTGCTCCAGCCGTCTCAACCAATCATCGGTGTGACGCCGGGGCACACATGGCCATTAGGTCACATCGACCTACCGGTCACCTTCGGTGGACCCGCCAACTTCCGCACGGAGCGGGTGAGCTTCGATGTGGCGGACCTCAGTCTGCCCTACAACGCGGTCCTAGGGAGGCCCGCGTTGGTGAAGTTCATGGCGGCGGTCCACTACGCCTACCTCCAGATGAAGATGCCGGGCCCCGGTGGCCCCATCTCTGTCCGTGGCGACCTTAAAGTCGCGCTCGCTTGCATGGAGCAGCGCGCGGACCGCCTCGCTGCTGCGTCCAAGCCCGAGGGTGGTGACGAGAGGCTTGGCCCCTCTGCCCCCACCGCCCCGAGGCAGCGGATGGCCACATGCGACGAGGTCCCGGTCAAGGAGGTTGCCTTGGGCGACGGCCCATCCAAGACCACACGGATCGGTGGTCTTCTGGATGGCAAATAGGAAGACGCGCTCGTCTCCTTCCTGCGGGCAAACGCTGATGTCTTCGCATGGAGACCAGCGGACATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCGCCGTGCGGCCGGGCGCAAGGCCGGTCCGACAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCGAGACTTCTGGAGGCCGGATTCATCCGTGAAGTCATCCATCCGGAGTGGCTGGCGAACCCGGTGGTCGTTCCCAAGGCGAACGGCAAGCTTCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGATCCTTACCCCCTGCCTCGCATAGATCAGATCGTCGACTCCACTGCGGGGTGCGACCTTTTGTGTTTTCTAGATGCATACTCTGGTTACCATCAGATTCGCATGGCTAGGGAGGATGAGGAGAAAACTGCGTTCATTACCCCCGTAGGAACCTATTGTTATACATCAATGCCCTTCGGCTTAAAAAATGCAGGTCCTACTTTTCAACGTACTACTCGAATTTCTTTGGGTAGCCAAATAGGACGTAATGTTGAGGCTTATGTCGATGACTTGGTTGTAAAAACGCGCAACCAAGAAACTTTACTTTCAGATCTAGCGGAAACTTTTGAGAACCTCCGCTCCGCCCGCATAAAGCTGAACCCCGATAAGTGTGTGTTTGGTGTACCTGCGGGCAAGCTTCTCGGGTTCTTGGCCTCTGCCCGAGGCATTGAGGCCAACCCCGAGAAGATTCGAGCTATCGAGCGGATGCGCCCCCCCAGCAAACTTAGGGATGTGCAATGCGTCACCGGTTGCATGGCCGCCCTAAGTCGTTTCATATCAAGGCTGGGAGAGAAGGCGCTACCTTTGTTTAAGCTCCTCAAGCGCTCGGGGCCGTTCACTTGGACGGAGGAAGCTGACAATGCCCTCGCCCAGTTGAAGGCGTATCTCAGCTCTCCTCCGGTTCTAGTCGCCCCGGAGCCAAATGAACCCCTGCTACTTTACTTAGCGGCGACCCCCCAAGTAGTTAGTGCAGCGTTGGTTGTGGAGCGCGATGAGGACAATCCTCATTCTGCGCACCCCCACTCTGTGCCGACTTGGCCCGGGAGCAGGCAGGGAGGAGAAGCCCCCGAGTCGGACGGTGGCCTACGGCCCCTGACGACCGGAGTCGGCCCTCTGCCCGCTTGTCAGACGGTGCTGGGTGCCCCCGACCCACAGGAAGGCCCCGAGGCCACTGCGGGAAGGCCGCACCTATCGCCCTTTGGCCCCGAGGCTAACCCTGTGCTGACTCGACCCGGGAGAAAGCAGGGAGAAGAGGCCCCCGAGCCGAACGGAGGCCAGAGGCCCCTGACGACCGGAGCTGGCCCTTTGCCCGCTTGTCCGATGACACCAGGAGCCCCCGACCCCCAGGACGGCTCCGGGGCCACTGTGGGAAGGCCGCTCCTGTCGTCCTCCGACCCCGAGGTCATCGGCACAGAAGACGAGTGCGCCCCAAGGGGCCACTTGGACGAAGAACGCCCCGGGGATACGGCCCCTAGCAAAGAAGATCGGCCCCACCGAAGGGTGCAGCGGCCTATCTACTTTGTTAGTGAGGCCCTCCGGGACGCCAAGACCCGATACCCACAGGCCCAGAAGATGCTTTACGCTATTCTGATGGCCTCGAGGAAACTGCGCCATTATTTCCAGGCGCATCGGGTCACTGTGGTTACGTCTTACCCCCTCGGTCAAATCTTGCATAATCGAGAGGGTACAGGACGAGTGGTAAAATGGGCAATCGAGCTTTCTGAGTTCGATCTGCACTTTGAACCACGCCACGCTATCAAGAGCCAGGCCCTCGCCGATTTTGTGGCAGAGTGGACCCCGGCTCCAGAGACCGTCTCAATGCCCGAGGCTAGCACGAACCCCTCACAGCTGCCTCATGCCGCCCACTGGGTGATGCAATTCGACGGTTCTCTGTCTCTTCAGGGCGCCGGTGCAGGGGTCACGTTGACCTCTCCAAACGGAGACGTCCTCAGATACTTGGTCCGTCTCGACTTTCGAGCGACTAATAATATGGCAGAGTACGAGGGACTCCTTGCCGGGCTCAGGGTGGCAGCCGGGTTGGGGATCCGCCGCCTCCTGGTGTTAGGCGACTCTCAGTTGGTTGTTAACCAAGTCTGTAAGGAGTACCGGTGCTCTGATCCGCAGATGGACGCCTACGTGCGCCAAGTACGGCGTATGGAGCGCCATTTTGACGGGATAGAGCTTCGGCATGTGCCCAGACGGGATAACATGATAGCCGACGAACTCTCACGGCTCGCGTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTACCCAGCCGTCGGCGCGACCCGATCCCTTAGGGGAGACGGATGCGCCTGACCGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAAGGGAGCGCTCCAAGCTCCCTTAGATTGATTGCTTGGATCTCTGAGATCCAAACATACCTCACAGATAAGACTCTACCTGAGGACCGCGAAGGGAGTGAACGCGTACAACGCATTTCCAAACGCTATGTGTTGGTAGAAGGGACCCTCTATCGGCGCGCGGCTAACGGAATCCTCCTGAAGTGCATTCCTCAGGAACAAGGCGTTGAGCTTCTTGCAGACATCCATGAGGGCGAGTGCGGAGCCCATTCCGCCTCGCGTACCCTGGTTGGCAAGGCCTTTCGTCAAGGATTTTACTGGCCGACAGCTCTCAATGACGCAGTCGATCTGGTCCGGCGATGCAGAGCGTGTCAGTTCCACGCCAAGCAAATTCATCAGCCGGCCCAGGCCCTGCAGATCATACCACTGTCATGGCCATTTGCTGTCTGGGGGCTTGATATCCTGGGACCGTTCAAACGGGCCCCGGGCGGGTTTGAGTATCTGTATGTTGCGATCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTTGTCAAGATTGATAAGCACTCTGCTCTTAAATTTATTAAGGGCATCACGGCCCGTTTTGGAGTGCCTAACCGTATTATTACGGATAATGGCACCCAATTCACTAGTGAACTCTTCGGCGACTACTGCGAAGACATGGGCATCAAGCTCTGCTTCGCCTCACCTGCCCACCCCAGAAGCAATGGCCAAGTGGAGCGCGCCAATGCAGAAATCCTCAAAGGCCTTAAAACCAAGACCTTCAATATTCTCAAGAAGCACGGCGATTCATGGATCGAGGAGTTGCCAGCGGTGCTCTGGGCGAACCGAACCACACCAAGCCGAGCGACCGGGGAAACGCCTTTCTTCCTCGTCTACGGCGCAGAAGCGGTTCTCCCATCTGAGCTCACCCTGAGGTCTCCTCGGGCCACCATGTACTGCGAGGCTGATCAAGATCAGCTTCGTAGAGATGACCTCGACTACTTGGAAGAGCGAAGGCGGCGCGCGGCCCTCCGAGCTGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGATTGAGCAAACTCTCACCAATGTGGGAGGGTCCGTATCGAGTGGTCGGTGTCCCCCGGCCGGGCTCGGTACGGCTGGCCACGGGCGACGGCACGGAGCTGCCAAACCCGTGGAACATTGAACACCTTCGTCGCTTCTACCCTTGAAGGGGGGGGGGGTCGGGTGTCAGGTTTTGGCTCGGGCTAACCCCGCACCCCCCTCGGGTGTGCCGGGTTAGCCGGGGGCTACCACACATGCACAGCTTTACTTTTCGTATTTCAGCATTTCAATAAAAGAAGTTTCAATTTCCTAAAGGTTGTGTCTGTGCCGTTTTTCCTTCTGAAGAATCTTAACTTGAAATAAGGTCACTCGTGCTCAACCTTACCCTCGGGGGCTCGGTTCGGTCAGCTAAAATCGCCAAACGGGGCCCAGAACCGAGCCGTGCCCCGGGACGTGGTGAACTCCGGGGGGGAACCGGCAAAAACCCACAATCGGGTCACCCATACCCCTCGGTCACCACGTTCCCGGCCTGGCCAGTCTCGACATGCGGACTTGGGCACGAGCCCTTATTTCAAGCTAAGGCGCAAAAGGACCATGGCACAGATCATCCTCATCTCATATATAGCAAAATAAAACTAACACAAAAATTTTTTTTCATCATTTCTCATTGCAGATTGAGTTAATTTATACAAAAAAGAGGCATGAAGGCCTTAGAAGAAAGAACAAGAAAAAAGTTAAGATTGGCGGGGGCCTGGGGGCTCATTCCAATGCGCCCGGGTCGCCGGCCTCGTCGCCGCCGTCATCCTCATCGCTGGCGTCGCCCTCCTCGTCGGAGCTGGGGGCGAACGCGAGCAGAGGGGCCGACCCCTCGAAGCCGTCGACGATATGGTCGGCAGCATCCCGGACGCGCGCGCGCGTCGTCCTCGGTCCCGGGAGGGAACTCCTCCAGCGCCATCCAGGGAGAGAAATCGGGGTCCCGGGCCTGGTAACTCGCTAGCACGAGTTCGACCGCCCCCCGGGCGAGGTCCCTCGAGGATGACTTGATGGTCTTGTCGAGCTCCACGGGGAGTCGTTCGAGGACCCAGGCCATCCTGTTGAGGTGCGGAGCGAGGCCTTCCAGGTTGCTAGGGCGCGTCCTCGTCTGGCCTTTCCAGAGGCCCGCTTGCCGACCGGCGCGATCCATGCGGGAGACCGAGTCCCAAAGCATGTCGGGCCCCATCTCGCTCGCCAAGCGGAGGGCCTCGGCCTCCCCGATGGAAGAATCCAGCGCGCGCTGCATGTCAGCGACGGTGTGTTCGGCAGCCGCGAGGCGAGCGGCTAAGTCGCTTTCGCCCGCAGCCGCCCCACCGATGCGCGCCCTCGCGGCCAGCTCTTTCTCCCGTGCCTCGAGGTTGGCAGCCCGCTGCTCCAGCGCGGCTCTCTCGGCACGGACGCATTCAAGGTTGCGGCGCGCCTGCTCCTCTTGCGCCGCCTCCCGGAGGGAGAGGCTGTCCGCCAGCCGTTGCGTCGTGGCCTCGGCCTCCTCGAGAGCTCGCTCCCGCTCAGCGAGTGCATCCTCGCGAAGGCGGAGCGCGGACTCCTCCTCGGCGCAGGCGGCCTCGTGCGCCGCCAGCGTCGCCTCCCGGAGAGCAGTGGCGGCCTCGCGGTCCGTGAAGCCCTTCTCCACGGTGCCGGCGTGTTCTTCCAGCGCCATGGCACGGGCCTCAAGGGCCTCCTCGCGCCGCCGGGACGCCGCTTCGGCTTCCGTTGCCCGCCGCTCTCGGGCAGCAGCGGAGTCGAGAACCCCTTGGGCGGCGTCGAGCTTGTTCTTCAACTCCGCCTCCCAGCTCCCGTGTTGAAGGCGGAGGGAGTCCTGCGCCTCGATCATCGCGGTGGTGGCGACGAGGGCGGCCTCTCGCTCCTCCTCCACCTCTCGGGCGATCTCCGCCAGCGCCGTCTTGCGGGCTTCAAGCTCCGAGATGTGGCGGCGGTGGGCCTTACGGCCCACCTCCACCATGGCGTCCACCGAGCGCCGCCCCTCCTCGACGCGCGCCCATGCGGCCTCGAGCTCCGCTCGTTCCGCTCGCAAGGCCTCCACTTGGGCGCTAAATCCATCTAGCACCGCGGTGTTTGCGGCGGCCAAGGCCTGCATAATGGGCTCGGCGCTCACCGGGGCGACGGAAGAGGAGGAGAAGAGCCGCCTTGGAGAAAATGCGACGCGGCTTGGCCCCCCGAAGGATGCGCTGGGCTCGGGGATGTCCCCCGGGCCCGTTTGGTCCTGGGCGTCGCCCGGTGAGGTAGGCCCAGGCGATGTGCCCGCGGCCTCGTCGCGAGCCTCCCCGGAGGCTGTCGCCTGAGGGTTGCCCGAGGGAGTGGGCCCAGTTGACGCGCCAGCAGCAGCTGTTGCCTCAGCCTGGCGAGCCCGGGCGGCCTCCTCCTTAGCGGCTTCCTCAGCCCGGGCGGCCTCCTCCCGAGCAGCTTCCTCCGCTTGGCGAACCCGGGCGGCCTCCCGGGCGGCCTCTTCAGCTTCCCGAAGGCGATCTGCGGCTTCACGCCGGTCAGCTTCTCGCCTCCGCTCTTCTGCGGCCGCCGGATCTTCGGCCTCGGACTGGCCGGACTTGGGGTGGCGGGAGGAGTGCGACGGGACATCGCTGAAGCAGAAGAAAAAACCAGAAGACAAACAAGATGGGTAAGAGAAAACTTGTTTAATGGGATAGAAGAAAGACGGTCGCAATGAGAATGGGGCGAACCTGCGAAGGGGTCGGTTGAATGACCACTTTGGAGGGGAAATCAGGTTTCCCCGGCATGGTTCCGTCTCCCCCGTCTTGCGGAGCCGTTTCTTCTTGCGCTCCCCCTCGGGCTGCGACGTCGGCGCGGCCCCCTCCGGGCGCCGACTGCTGGCACGCGCCGCCCCGCCCCCTCGGGGAGGAGATGGGGGAGGTGTTCCTCCCAACTTCCTCTTCCCCTGGGCGTCGGCAGGGCGGCTGCTCCCCGAGCCCCCGACGCGGGGCCCAGAAGCACGACCCCCTCCTGGGGCAGATTGTTCCCCCCGGCGGCGCTCGCCCGCGCCGTCGTGGCCCTTAGGGGCTCTCTCCTCTGAGGCCCCGACCCCCAACATAATGGTTAGAATGGAGACGCGGTCGGGATCGATGCAGAGGGGGAGGATCTCCTGAGGAAGGCGAGACGCCTCCGCGGAGCTAAGATTCAGCACCCTTTGGACTACGATCTTGAAGTCCTCGGGAGCCCAATCCCATCTGGCTCCCTGGTGGGTCCGCATGTAGTCTTCAGGCCCAGTGTACTCCCAGGCGCTCCGGGCGCGCCGTTGGAGCGGCGCAATCCGACGGCGGAGGTAATCGCCGTACACCATGGCCCCGGTGAGCCCCTGGGATCGCAGGCCCGCCAGGCGGTCGAGGACGGCGTCGTAGTCCTCCCCCAGATCTACCGGCGCCCGCCAGCTGGAGACCTGCGCCGGGGGCTGGCTTGGAAGTCGGAGGCGCGCTTCGTTGGCGAGGGGGGTGTAGAACCAGTCGCTCTTCCAGTCGTCCCACTTCTTGCGGAGGACGCAGGGGATGTAGCGGTTCAACACCGGCCCCCGCGGCTGGAAGTAGCAGCCGCCAACCACCGACGGCGGTGACACCGACTGCACGGTGAAGAACCACCGGAACAGCTGAAGAGAGGGGCGCACCCCAATGAACATCTCGCACAGGTGTGCGAAGATGGCCAATGTCATCACCGCATTGGGGGTGAGGTGCGCCATCTGGAGATCGTAGAACTCCAGGACATCCATGAAGAAATGAGAAAATGGCGGGACCAGCCCAGCCATTGCGAAGGGGAGGAAGAAGATGGACCGCCCCGGGTAGTCTGGTGCCGGGCGCCCCTCGCCCAGCATTACTATCTCCCGACCGGTGGCGGACTCCGGCATGAAGCGGCGCGGCAGTCCGGCGTGCCTCTCGTTCACGATGCGGGAAGGCGGCAGTACACTGCCGTCGAGCAGAGCAGAGCCCCGTGCCATGGCGGTGGAGGAAGAGATGATTGGGAACGAGCGCGTGTGGCGAAAGTAGGGCGTAGCAGAGAAAGAGTTAGAGCTCAGGCGGCGAAGGCAAGAGGAACAATGGCGAAAGGAAGGGAGCAAATCCTTTTCTCGATGCTTTTATACCCTTGCCATCGCTGGGCCTGGCTCCTCGTTTCTCGCGCCCACTACCTCGCTCCCTCGTATCTCGTTATCTCGCTCCCTCGTTTCCCGTGCCCCCGCTTCCACTAATCCCATTCGCCCGCTTACGGCGCATGAAGTGGATATGCGTTGGTGGCAATCGAAACGGATTGTATCGTGCGCGCGTTAATTACGCTCGCCGACCGAAGCGGCGTTACCGTATCTCCGGGCGAGACAAATCTGCTCACCCAGATTCGCGCGCTGCTCAAGTGGTGTGGCAGTCTTGAATAGACCGCCCATTATGAACAACCAAAGTTACCAATATCAATGTGCATGAATTGAGACCGTTGGGTATTTTGCCCAACTACGGAGACCGGTCCCACCTGTCACCAGGCTTTAGGGGTGGCGTCACACCTGACCGCTTCCCTGGGGAAGGGAAATTGCTCTGGCATAACGCCGGGGGCTACTGTCGGTGATATGGGACCGGGAGTATCATGACCAGAGGCTTGAGGCAGACGCAATCGCCCACGTGGCCTGGCACCTTCGGGGACGTCGGGCCCGAGGGTGAGGTGTCCGCCCTCCTCCTGATTTCCCCCGAGGGGGGGTCGGGTTGCGCTTGCCCCGGCCCCGAGGGCCGAGGCACCCCGACCCCTTAAGGAAGTCTGCGCCACATATATGGGATAAGTGAGCACAGCTGTGCTCACCTAACAGCATTTATTGCAGTCTGGTCAAGCGTGTCATGCTGCATGCAACGCAGTACAGCGCGTTCCTTTATCCGGTCTGTGACCAGTCACAGACCGGTCAGATCACGGGTTAGGTGGCGACTGGCGGTCTGACGCACGCCTTGCCCCATCCCGTCAAGACAAAAGTCTGTAGGCACTCGTCTCAAGCCGGAGCTAGCGTGTTATCTCTTAGAGATGGCACGTTAGCCCTGGTCAGATTTATACCAGGCTTCATCCTAACCATTACAGGCAAGGTGTTACACGAAGAAGGGCAAACATGCACGTTGTTAAGCTGACGCGTGGCGGACAAGAATGACCGGTCTGGCACTGGTCGCGTCATCGACAGACAGCCACGGTCCCGCGTCATCTCTGTCTTCGGGGGAGGTGGGGGTAGGTGTGGGCTGTCCCATCAGAAGGGCTCCCGGATGGAAACCGTACCGATCTCCGCCCATTAAAGAGAAAAAGAACAGTCCAGTTTGGAAAGAGAAAGGGGCATGTGGTATCCCCTTGAGATATAAAAGGAGGACCTTGCCCATTTAGAGAAGGGACTTTTTCCCTTTTGGAAGGCTGAGGGGAAAGGGAGTTAATCCTTTGTAACTTGTCCATACACAAATCCACAAAAACACAGGAGTAGGGTATTACGCTGAGCAGCGGCCCGAACCTGTATAGATCGCCGCCGTGTCTCGCGTTTTCTCCGAGCAAGCGATCTTTCCACATATAGAAAGAGCTTGAGATCTCACCCTAAGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCACGAGCTCCGTCACACCTGTAACCGGAAATTAAATGGAATCATTAGTAATTGCAAAAAAATTAACAAATGAATACGAAGACTCGTTAGTAATTCCCTGACGCTGTGTCACCTGTGACTGCCTGACCCCGGATAGGAAGACCCAGGATCATGGCGACGTCCTCCAGAGTGACCGTCAGCTCCCCGCACGGTAGGTGGAAGGTGTGTGTCTCTGGACGCCACCGGTCCACTAGGGCCGTCAGAGCAGCGGCGTTGTACAGAGGCACCGGTCGCTGCGCCATGGTCACGAACGCCAAGAGCTTCGCCCGCCGTAGGTACGGGACGTACCGGTCGTCGAACAGTATGTGCGCCGTGTGACCTCTGACTCGAAGGGTCTTCAAGCGCTGCATCAATAGACAAACATAATAACATGTTAGTCTTGTTCTATTTATCTGAGCTAAATTACGATATTTGTATGATTTTCATTCGATGAAACAGTATGTTAGTTTAAACGATAGTTACTTTTTACGAGCAGTGAAATAAAAATGAAAGAGCGAACTGAGTAATCAAGAATAATATAAAATCATAAAGATTGAAAACAATCCTTGGAGCAATGGGCAGAGTTGGCGATACTTTTTTTTATAGTTTGCAATCAATATTATGACAATTTCATTTTGTCCTCGACAAGCATTTGATTCAGAAATTGATCATGTACAAATTCCCTGCTAG PhaseCut54: +Start +End FragmentLength FragmentNumber 1490 1634 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1488 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTTATATTGAT 1512 - 2.17 0.89 1.75 1.02 2.48 0 0 0 11.38 1.15 1.64 GTTAATGAATCTAGACATATATAT 1536 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1538 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1560 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 GTATGCGGGAAATGCTAGAATGAC 1586 + 0.39 0 0 0 0 0 0 0 0 0 0 TTACATTGTGAAACGGAGGAAGCA 1610 + 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G35920 17941 LOC_OS07G35920.1-3 osa-miR1436 1481 1501 >LOC_OS07G35920.4-3 GTATGGTACCGCTGTTTTTACCTGGTTAAAAGTTTTACTATAGCTATGTACGTCAGCTTGCAGTCATGCACGGTTCTCATAGGGTGGTTAATTTCTACTCCCTCCATCCCAAAATATAAACACTTTTAGAATAGTACAGAGTCAAAATATTTTTAACTTTGACTATTAATAGCTAAAAAATAAAAATATCAATGATGTAAGAATAATATGACTAGATTTATCATTAAACAAACTATCATAATATGTAACTCTTTTTATTTAAACCATCTTATTTTTGTAAATATTTTTAGTCAAAGTAATATCTCAATGACCGTGTCAAAGTTCAAAAATACTTATATTTTAGGACAGAGTGAGTAGTATTTACTATCAGCTCCATGAATTTACTATTGCTCAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTTATATTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGTATGCGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGCACTTTTTTTTTTGAAACTGAACTCAGTACTTGATGCTGAAAGGGTTGGTCTCGTTGCAACGTGTGCTTTAATTTGTTTGCAGTGGCATTCCTGGCTTGGTAGTTGGTAGCGACCGTTTTTTTGACAAATTGACCCTTTTGGAAAACTTACTTCGAAACTAACCCCTGCCAAAAACTTCAACCAAAAATAGGCCGTCGCCTCAGCGCCAAACACATTGGCGCTGACGTTGGTCGTGTCAGCGCCAACGGGACTGGCGCTGACATTGTGCCACCGTGGCGGCCGGGCCGATCCCCTAGCTGACGTGGCAGCTACATCAGCGCCAACCGCTTCGGCGCGGAGGTGCCCAACCTCAGCGCCAACCGGACTGGCGCTGAGGTGGGACTTGGCCGCAACCCCCAGGCCCAGACCAGCAAGCCTCCTGGATGGCTTGCGGGCTGGGATCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCACCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCATCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGCCAACCTGGCGCTGAGGTGGAACTTGGCCGTTTCGGCCTTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCCAGCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGTCCATCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCGTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTGGGCTGGGACCTCAGCGCCAGGTGCACTGGCGCTGAGTTTGGACATGTCAGCGCCATTTAGCATGGCGCTGACGTCCCAGCCCTGCTAAAACTTCAGCAAAACTTTGCACACAACACAGGCAAACATCAAATGACAGAAATTTACAGGCAGTAATATATCCAGAGAACCATACAAAACATACATCCATCCATCAATCCCAACATCATTCCATACATCCATAGAATCCATCAATACATCCATATATGAAGTCCATACATATAAGAAATAAAAACATCCCATCGATCCTCGTCTATACATCCAGTCGAGTCCATACATCCAGTCCATACATCCATCGAACCATGCATCAAGTCCATCCATCTATCCATCCATCCATTGAACCATGCACTCACCTCCTCCTACCTCTAGTGCGAGGACGAGGCACGTCGGGGGTGTACCTCCAGTCCTGCGAAGGAGCCCGCCGGCGTCGTGGTCGAGACGGGCCGGGCTGCGAGATATCCGGCTGTGACGACTCTGGTGCGTCCTCTAGCTGCGAGGGACCGAGCTCATCCGCCTCCTCTTCTCTGTCCTCATCCCCTTCTTCCTCCTCATCTCCTTCCTCCGCCTCTTTGTCTTGCTCGCCCTCCTCGTCACCCACCTCCCCTTCTTCATCCCCCTCTTGGTGGGCATGAGCATGTTCGACCACATCAGTCGACCTGCAGCCGAGCCTTGCTGCCAACTTCCGACATCGCTGCCGTAGTCTCTGCATAAAAAATAAGCCATGTTAAGTTATCGCTTTTGGAAGAAAACACCGTAGTTTCATCTCTTTCCAACGATTACCTGTAGGGCGTTGCGGAGGGTGCCGCCCTCTCCTTCGGAGCCAGGAGCCGTGCCTAGCGCCACTCCCGCGTCGTTGACGGTCCGCAAGAGCTCTCGAGCCTGTAGGATTGAAATGAAGTAAGTCACAACATATATGGCATTGAAATTGAAATAATATACAACATTAATGCTAGAAACGAACCACTCTGTCGCGAACAGGTCCCGTCTCGACCGTGGTACCTAGACGGGTACGAGTATCGTACTCGTTCTGCTCCTCAACATCCTCGGGGTCATCCGCTATGTCGGCTAGTGTCCAAGCCGGACGTAGGACAAGACAGTAGGTCCAACATGTTAGCAAGAAATTGAAATGTTATGAAACATAACATGCGTGAACTTACCTGTAGCAACCAAACACAGCCTGCTAGGTTCGCGTCCCCGCCTTGCCTTCGGCAAGCATCACAGAGTTGCCGGTACAACCAGGCTAGGGCAGCCGACCCCCAGCTGAAGGTACCCGCCTCGTCCCAGTCCGCGAGCAACGGCAGCCACATCCAAGAAGCCATGTCTCCACCAGAGTCAGGGAACAGAATACTGCCGAAGATGTACAGCACGTACGCCCTGCAGTATCGCTGTACTGTAGCCTCGTCTGCCTCAGCGGGACACTGACCGAAGTTGGCTCGCAACCAACTCAAAGGAACCCCTGATGTCTTCGTCTGCCTCTGACCATCAGGTGCCACTGGAGGCTCCAGACCAAGGTACTCCTCGACCCTCTCCCTCCAGTTCCCCGACGCTGTGTCACCTTGTCGGTGATATGGGACCGGGAGTATCATGACCAGAGGCTTGAGGCAGACGCAATCGCCCACGTGGCCTGGCACCTTCGGGGACGTCGGGCCCGAGGGTGAGGTGTCCGCCCTCCTCCTGATTTCCCCCGAGGGGGGGTCGGGTTGCGCTTGCCCCGGCCCCGAGGGCCGAGGCACCCCGACCCCTTAAGGAAGTCTGCGCCACATATATGGGATAAGTGAGCACAGCTGTGCTCACCTAACAGCATTTATTGCAGTCTGGTCAAGCGTGTCATGCTGCATGCAACGCAGTACAGCGCGTTCCTTTATCCGGTCTGTGACCAGTCACAGACCGGTCAGATCACGGGTTAGGTGGCGACTGGCGGTCTGACGCACGCCTTGCCCCATCCCGTCAAGACAAAAGTCTGTAGGCACTCGTCTCAAGCCGGAGCTAGCGTGTTATCTCTTAGAGATGGCACGTTAGCCCTGGTCAGATTTATACCAGGCTTCATCCTAACCATTACAGGCAAGGTGTTACACGAAGAAGGGCAAACATGCACGTTGTTAAGCTGACGCGTGGCGGACAAGAATGACCGGTCTGGCACTGGTCGCGTCATCGACAGACAGCCACGGTCCCGCGTCATCTCTGTCTTCGGGGGAGGTGGGGGTAGGTGTGGGCTGTCCCATCAGAAGGGCTCCCGGATGGAAACCGTACCGATCTCCGCCCATTAAAGAGAAAAAGAACAGTCCAGTTTGGAAAGAGAAAGGGGCATGTGGTATCCCCTTGAGATATAAAAGGAGGACCTTGCCCATTTAGAGAAGGGACTTTTTCCCTTTTGGAAGGCTGAGGGGAAAGGGAGTTAATCCTTTGTAACTTGTCCATACACAAATCCACAAAAACACAGGAGTAGGGTATTACGCTGAGCAGCGGCCCGAACCTGTATAGATCGCCGCCGTGTCTCGCGTTTTCTCCGAGCAAGCGATCTTTCCACATATAGAAAGAGCTTGAGATCTCACCCTAAGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCACGAGCTCCGTCATCTGGCGCGCCAGGTAGGGGGCTCAGCGTGTGTTTTCTGAGCTCTCATACTCTTCCGTGTGCGCCAAGTTTCCCTTGTTCTGCCTAATGGCCGAGCAAGCAAAGGCGCACGATCTCTCTCCGAGTGTGAGCGGCGACGACGGGGAACCAAATCCACGCCGTCGAGCTCGTACTCCCCCACCTCCTCCGCGCCAAAGCCCTAAGCAGGGGGAGGCGCTTGAGAGGGTCGACAAATCCGTGGCATCACCAGTCGCAGGTGATGCAGGAGAACGGCGAGATGGGGAGCGTCGCCTCCTCGTCTACGGCGACGGCAGCACGCCTCAGGGCGCGCTTCAGGTTGCTGGCGCGCTCCTACGACACCCGCCTGTCGTCCATGACCCGGAGTCTCCAGCCCAACGATGGCTGGAAGACGTGGCCAACTTGGTCATGACGGCTCAGCAGCGCTTGGGTGCTGGTGGACGGTCCGCCACCACCAAGACCTCCGGCGCCGCTACCACCGGCTCCGTGTCGTCAAGGCGGAGGGCGCGGCGAGCGGCGGCGGCTGCACGTCATTCGGCTGCTACTCCCTCGTCGACACCTTCGACTCGGAAGGATCAGCATGGGGAGCCGGATGCCCGCCTCAACATCGAGCGCCGGCGTAATAGCCGGCGTACCCCCCGTGCAACGGAGGGTGCCTCCTCGTCCAGAGTGTCACCTCGACATGGACGTGAGGACCAGCCCTCCGTGCCCCCGGCTGGTGGTGTTGGCTGTAGAGCCTTTGTGGCGAGTCTTCGGAATGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCACTGAGAAGTACGATGGGAGCGTCAACCCCACCGAGTTTCTCCAGGTCTATATGACCGGGATCGAGGCCGCTGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTAAAAGGACAGGCGCGGGGTTGGCTAATGAACCTGCCACCCGCGTCGGTCCACTCCTGGGAAGATTTGTGCCAACAGTTCACCATGAACTTCCAAGGCACATATCCGCGCCCAGGCGAAGAAGCGGACTTGCATGCAGTACAGCGAGGCGATGATGAGTCGCTTCGCTCGTACATTCAGCGGTTTTGCCAAGTCCGCAATACTATACCATGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGCGTGCGGCACAACCGCATGCTCGAAAAGATCGCTTCCAAAGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTTGCGGACCGAGTGGCTCGTAAGGAGGAAGCGTGGACATGGAACTCCTCCGGTTCCGGAGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCAGACAGGGCGGCGTGACAGGAGGAGGAAGAAGAGGTCGGACCGTTCCGGCGACGAGGGTCATGTCCTCGCCGTCGAGGGCGCTCCGCGGGCCACCCGAAAGGGGAGGCCTGCGAGCGACAAAAAGAAAGAGGCTGGTACTCCCAGCAGGGAGCGCCCCGCCGGCAGGTGGTGCTCCGTCCACAACACCTCCCTCCACGATCTCGCGGACTGTCGTGCAGTCAAAAACCTGGCTGAGCGAACGAGGAAGTGGGAGGAGGACAGGAGGCAGGAACGCCGTGAGGGCAAGTCCCCGGCGGTTCCTTCTGGCAAACGGCGAAGTGAGGCCAAGCAGAAGGCCCCCGCTGTTGACATCGATGATGGTGAAGATGACCTAGGTTTCCAAGAACCTGGGGCCACCATTGCCACCGTCGATGGAGGAGCGCGTGCTCACGTCTCTCGCCGGAGCTTCAAGGCTATGAAGCGAGAGCTTCTGGCCATGGCCCCTACTCATGAGGCGATGCGTCGGGCGCGGTGGTCAGAGGTTGCTCTCACTTTCGACCAGACCGACCACCCACCGTGCATTGCCCGGGGAGGGCAGGTTGCGATGGTAGTTTCCCCCACCATCTGCAACGTGAAGTTGGGACGTGTCCTCATAGATGGAGGAGCGGCTCTCAACATCCTTTCCCCCGCGGCCTTTGATGCTATCAAGGCCCCGGGGATGGTGCTCCAGCCGTCTCAACCAATCATCGGTGTGACGCCGGGGCACACATGGCCATTAGGTCACATCGACCTACCGGTCACCTTCGGTGGACCCGCCAACTTCCGCACGGAGCGGGTGAGCTTCGATGTGGCGGACCTCAGTCTGCCCTACAACGCGGTCCTAGGGAGGCCCGCGTTGGTGAAGTTCATGGCGGCGGTCCACTACGCCTACCTCCAGATGAAGATGCCGGGCCCCGGTGGCCCCATCTCTGTCCGTGGCGACCTTAAAGTCGCGCTCGCTTGCATGGAGCAGCGCGCGGACCGCCTCGCTGCTGCGTCCAAGCCCGAGGGTGGTGACGAGAGGCTTGGCCCCTCTGCCCCCACCGCCCCGAGGCAGCGGATGGCCACATGCGACGAGGTCCCGGTCAAGGAGGTTGCCTTGGGCGACGGCCCATCCAAGACCACACGGATCGGTGGTCTTCTGGATGGCAAATAGGAAGACGCGCTCGTCTCCTTCCTGCGGGCAAACGCTGATGTCTTCGCATGGAGACCAGCGGACATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCGCCGTGCGGCCGGGCGCAAGGCCGGTCCGACAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCGAGACTTCTGGAGGCCGGATTCATCCGTGAAGTCATCCATCCGGAGTGGCTGGCGAACCCGGTGGTCGTTCCCAAGGCGAACGGCAAGCTTCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGATCCTTACCCCCTGCCTCGCATAGATCAGATCGTCGACTCCACTGCGGGGTGCGACCTTTTGTGTTTTCTAGATGCATACTCTGGTTACCATCAGATTCGCATGGCTAGGGAGGATGAGGAGAAAACTGCGTTCATTACCCCCGTAGGAACCTATTGTTATACATCAATGCCCTTCGGCTTAAAAAATGCAGGTCCTACTTTTCAACGTACTACTCGAATTTCTTTGGGTAGCCAAATAGGACGTAATGTTGAGGCTTATGTCGATGACTTGGTTGTAAAAACGCGCAACCAAGAAACTTTACTTTCAGATCTAGCGGAAACTTTTGAGAACCTCCGCTCCGCCCGCATAAAGCTGAACCCCGATAAGTGTGTGTTTGGTGTACCTGCGGGCAAGCTTCTCGGGTTCTTGGCCTCTGCCCGAGGCATTGAGGCCAACCCCGAGAAGATTCGAGCTATCGAGCGGATGCGCCCCCCCAGCAAACTTAGGGATGTGCAATGCGTCACCGGTTGCATGGCCGCCCTAAGTCGTTTCATATCAAGGCTGGGAGAGAAGGCGCTACCTTTGTTTAAGCTCCTCAAGCGCTCGGGGCCGTTCACTTGGACGGAGGAAGCTGACAATGCCCTCGCCCAGTTGAAGGCGTATCTCAGCTCTCCTCCGGTTCTAGTCGCCCCGGAGCCAAATGAACCCCTGCTACTTTACTTAGCGGCGACCCCCCAAGTAGTTAGTGCAGCGTTGGTTGTGGAGCGCGATGAGGACAATCCTCATTCTGCGCACCCCCACTCTGTGCCGACTTGGCCCGGGAGCAGGCAGGGAGGAGAAGCCCCCGAGTCGGACGGTGGCCTACGGCCCCTGACGACCGGAGTCGGCCCTCTGCCCGCTTGTCAGACGGTGCTGGGTGCCCCCGACCCACAGGAAGGCCCCGAGGCCACTGCGGGAAGGCCGCACCTATCGCCCTTTGGCCCCGAGGCTAACCCTGTGCTGACTCGACCCGGGAGAAAGCAGGGAGAAGAGGCCCCCGAGCCGAACGGAGGCCAGAGGCCCCTGACGACCGGAGCTGGCCCTTTGCCCGCTTGTCCGATGACACCAGGAGCCCCCGACCCCCAGGACGGCTCCGGGGCCACTGTGGGAAGGCCGCTCCTGTCGTCCTCCGACCCCGAGGTCATCGGCACAGAAGACGAGTGCGCCCCAAGGGGCCACTTGGACGAAGAACGCCCCGGGGATACGGCCCCTAGCAAAGAAGATCGGCCCCACCGAAGGGTGCAGCGGCCTATCTACTTTGTTAGTGAGGCCCTCCGGGACGCCAAGACCCGATACCCACAGGCCCAGAAGATGCTTTACGCTATTCTGATGGCCTCGAGGAAACTGCGCCATTATTTCCAGGCGCATCGGGTCACTGTGGTTACGTCTTACCCCCTCGGTCAAATCTTGCATAATCGAGAGGGTACAGGACGAGTGGTAAAATGGGCAATCGAGCTTTCTGAGTTCGATCTGCACTTTGAACCACGCCACGCTATCAAGAGCCAGGCCCTCGCCGATTTTGTGGCAGAGTGGACCCCGGCTCCAGAGACCGTCTCAATGCCCGAGGCTAGCACGAACCCCTCACAGCTGCCTCATGCCGCCCACTGGGTGATGCAATTCGACGGTTCTCTGTCTCTTCAGGGCGCCGGTGCAGGGGTCACGTTGACCTCTCCAAACGGAGACGTCCTCAGATACTTGGTCCGTCTCGACTTTCGAGCGACTAATAATATGGCAGAGTACGAGGGACTCCTTGCCGGGCTCAGGGTGGCAGCCGGGTTGGGGATCCGCCGCCTCCTGGTGTTAGGCGACTCTCAGTTGGTTGTTAACCAAGTCTGTAAGGAGTACCGGTGCTCTGATCCGCAGATGGACGCCTACGTGCGCCAAGTACGGCGTATGGAGCGCCATTTTGACGGGATAGAGCTTCGGCATGTGCCCAGACGGGATAACATGATAGCCGACGAACTCTCACGGCTCGCGTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTACCCAGCCGTCGGCGCGACCCGATCCCTTAGGGGAGACGGATGCGCCTGACCGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAAGGGAGCGCTCCAAGCTCCCTTAGATTGATTGCTTGGATCTCTGAGATCCAAACATACCTCACAGATAAGACTCTACCTGAGGACCGCGAAGGGAGTGAACGCGTACAACGCATTTCCAAACGCTATGTGTTGGTAGAAGGGACCCTCTATCGGCGCGCGGCTAACGGAATCCTCCTGAAGTGCATTCCTCAGGAACAAGGCGTTGAGCTTCTTGCAGACATCCATGAGGGCGAGTGCGGAGCCCATTCCGCCTCGCGTACCCTGGTTGGCAAGGCCTTTCGTCAAGGATTTTACTGGCCGACAGCTCTCAATGACGCAGTCGATCTGGTCCGGCGATGCAGAGCGTGTCAGTTCCACGCCAAGCAAATTCATCAGCCGGCCCAGGCCCTGCAGATCATACCACTGTCATGGCCATTTGCTGTCTGGGGGCTTGATATCCTGGGACCGTTCAAACGGGCCCCGGGCGGGTTTGAGTATCTGTATGTTGCGATCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTTGTCAAGATTGATAAGCACTCTGCTCTTAAATTTATTAAGGGCATCACGGCCCGTTTTGGAGTGCCTAACCGTATTATTACGGATAATGGCACCCAATTCACTAGTGAACTCTTCGGCGACTACTGCGAAGACATGGGCATCAAGCTCTGCTTCGCCTCACCTGCCCACCCCAGAAGCAATGGCCAAGTGGAGCGCGCCAATGCAGAAATCCTCAAAGGCCTTAAAACCAAGACCTTCAATATTCTCAAGAAGCACGGCGATTCATGGATCGAGGAGTTGCCAGCGGTGCTCTGGGCGAACCGAACCACACCAAGCCGAGCGACCGGGGAAACGCCTTTCTTCCTCGTCTACGGCGCAGAAGCGGTTCTCCCATCTGAGCTCACCCTGAGGTCTCCTCGGGCCACCATGTACTGCGAGGCTGATCAAGATCAGCTTCGTAGAGATGACCTCGACTACTTGGAAGAGCGAAGGCGGCGCGCGGCCCTCCGAGCTGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGATTGAGCAAACTCTCACCAATGTGGGAGGGTCCGTATCGAGTGGTCGGTGTCCCCCGGCCGGGCTCGGTACGGCTGGCCACGGGCGACGGCACGGAGCTGCCAAACCCGTGGAACATTGAACACCTTCGTCGCTTCTACCCTTGAAGGGGGGGGGGGTCGGGTGTCAGGTTTTGGCTCGGGCTAACCCCGCACCCCCCTCGGGTGTGCCGGGTTAGCCGGGGGCTACCACACATGCACAGCTTTACTTTTCGTATTTCAGCATTTCAATAAAAGAAGTTTCAATTTCCTAAAGGTTGTGTCTGTGCCGTTTTTCCTTCTGAAGAATCTTAACTTGAAATAAGGTCACTCGTGCTCAACCTTACCCTCGGGGGCTCGGTTCGGTCAGCTAAAATCGCCAAACGGGGCCCAGAACCGAGCCGTGCCCCGGGACGTGGTGAACTCCGGGGGGGAACCGGCAAAAACCCACAATCGGGTCACCCATACCCCTCGGTCACCACGTTCCCGGCCTGGCCAGTCTCGACATGCGGACTTGGGCACGAGCCCTTATTTCAAGCTAAGGCGCAAAAGGACCATGGCACAGATCATCCTCATCTCATATATAGCAAAATAAAACTAACACAAAAATTTTTTTTCATCATTTCTCATTGCAGATTGAGTTAATTTATACAAAAAAGAGGCATGAAGGCCTTAGAAGAAAGAACAAGAAAAAAGTTAAGATTGGCGGGGGCCTGGGGGCTCATTCCAATGCGCCCGGGTCGCCGGCCTCGTCGCCGCCGTCATCCTCATCGCTGGCGTCGCCCTCCTCGTCGGAGCTGGGGGCGAACGCGAGCAGAGGGGCCGACCCCTCGAAGCCGTCGACGATATGGTCGGCAGCATCCCGGACGCGCGCGCGCGTCGTCCTCGGTCCCGGGAGGGAACTCCTCCAGCGCCATCCAGGGAGAGAAATCGGGGTCCCGGGCCTGGTAACTCGCTAGCACGAGTTCGACCGCCCCCCGGGCGAGGTCCCTCGAGGATGACTTGATGGTCTTGTCGAGCTCCACGGGGAGTCGTTCGAGGACCCAGGCCATCCTGTTGAGGTGCGGAGCGAGGCCTTCCAGGTTGCTAGGGCGCGTCCTCGTCTGGCCTTTCCAGAGGCCCGCTTGCCGACCGGCGCGATCCATGCGGGAGACCGAGTCCCAAAGCATGTCGGGCCCCATCTCGCTCGCCAAGCGGAGGGCCTCGGCCTCCCCGATGGAAGAATCCAGCGCGCGCTGCATGTCAGCGACGGTGTGTTCGGCAGCCGCGAGGCGAGCGGCTAAGTCGCTTTCGCCCGCAGCCGCCCCACCGATGCGCGCCCTCGCGGCCAGCTCTTTCTCCCGTGCCTCGAGGTTGGCAGCCCGCTGCTCCAGCGCGGCTCTCTCGGCACGGACGCATTCAAGGTTGCGGCGCGCCTGCTCCTCTTGCGCCGCCTCCCGGAGGGAGAGGCTGTCCGCCAGCCGTTGCGTCGTGGCCTCGGCCTCCTCGAGAGCTCGCTCCCGCTCAGCGAGTGCATCCTCGCGAAGGCGGAGCGCGGACTCCTCCTCGGCGCAGGCGGCCTCGTGCGCCGCCAGCGTCGCCTCCCGGAGAGCAGTGGCGGCCTCGCGGTCCGTGAAGCCCTTCTCCACGGTGCCGGCGTGTTCTTCCAGCGCCATGGCACGGGCCTCAAGGGCCTCCTCGCGCCGCCGGGACGCCGCTTCGGCTTCCGTTGCCCGCCGCTCTCGGGCAGCAGCGGAGTCGAGAACCCCTTGGGCGGCGTCGAGCTTGTTCTTCAACTCCGCCTCCCAGCTCCCGTGTTGAAGGCGGAGGGAGTCCTGCGCCTCGATCATCGCGGTGGTGGCGACGAGGGCGGCCTCTCGCTCCTCCTCCACCTCTCGGGCGATCTCCGCCAGCGCCGTCTTGCGGGCTTCAAGCTCCGAGATGTGGCGGCGGTGGGCCTTACGGCCCACCTCCACCATGGCGTCCACCGAGCGCCGCCCCTCCTCGACGCGCGCCCATGCGGCCTCGAGCTCCGCTCGTTCCGCTCGCAAGGCCTCCACTTGGGCGCTAAATCCATCTAGCACCGCGGTGTTTGCGGCGGCCAAGGCCTGCATAATGGGCTCGGCGCTCACCGGGGCGACGGAAGAGGAGGAGAAGAGCCGCCTTGGAGAAAATGCGACGCGGCTTGGCCCCCCGAAGGATGCGCTGGGCTCGGGGATGTCCCCCGGGCCCGTTTGGTCCTGGGCGTCGCCCGGTGAGGTAGGCCCAGGCGATGTGCCCGCGGCCTCGTCGCGAGCCTCCCCGGAGGCTGTCGCCTGAGGGTTGCCCGAGGGAGTGGGCCCAGTTGACGCGCCAGCAGCAGCTGTTGCCTCAGCCTGGCGAGCCCGGGCGGCCTCCTCCTTAGCGGCTTCCTCAGCCCGGGCGGCCTCCTCCCGAGCAGCTTCCTCCGCTTGGCGAACCCGGGCGGCCTCCCGGGCGGCCTCTTCAGCTTCCCGAAGGCGATCTGCGGCTTCACGCCGGTCAGCTTCTCGCCTCCGCTCTTCTGCGGCCGCCGGATCTTCGGCCTCGGACTGGCCGGACTTGGGGTGGCGGGAGGAGTGCGACGGGACATCGCTGAAGCAGAAGAAAAAACCAGAAGACAAACAAGATGGGTAAGAGAAAACTTGTTTAATGGGATAGAAGAAAGACGGTCGCAATGAGAATGGGGCGAACCTGCGAAGGGGTCGGTTGAATGACCACTTTGGAGGGGAAATCAGGTTTCCCCGGCATGGTTCCGTCTCCCCCGTCTTGCGGAGCCGTTTCTTCTTGCGCTCCCCCTCGGGCTGCGACGTCGGCGCGGCCCCCTCCGGGCGCCGACTGCTGGCACGCGCCGCCCCGCCCCCTCGGGGAGGAGATGGGGGAGGTGTTCCTCCCAACTTCCTCTTCCCCTGGGCGTCGGCAGGGCGGCTGCTCCCCGAGCCCCCGACGCGGGGCCCAGAAGCACGACCCCCTCCTGGGGCAGATTGTTCCCCCCGGCGGCGCTCGCCCGCGCCGTCGTGGCCCTTAGGGGCTCTCTCCTCTGAGGCCCCGACCCCCAACATAATGGTTAGAATGGAGACGCGGTCGGGATCGATGCAGAGGGGGAGGATCTCCTGAGGAAGGCGAGACGCCTCCGCGGAGCTAAGATTCAGCACCCTTTGGACTACGATCTTGAAGTCCTCGGGAGCCCAATCCCATCTGGCTCCCTGGTGGGTCCGCATGTAGTCTTCAGGCCCAGTGTACTCCCAGGCGCTCCGGGCGCGCCGTTGGAGCGGCGCAATCCGACGGCGGAGGTAATCGCCGTACACCATGGCCCCGGTGAGCCCCTGGGATCGCAGGCCCGCCAGGCGGTCGAGGACGGCGTCGTAGTCCTCCCCCAGATCTACCGGCGCCCGCCAGCTGGAGACCTGCGCCGGGGGCTGGCTTGGAAGTCGGAGGCGCGCTTCGTTGGCGAGGGGGGTGTAGAACCAGTCGCTCTTCCAGTCGTCCCACTTCTTGCGGAGGACGCAGGGGATGTAGCGGTTCAACACCGGCCCCCGCGGCTGGAAGTAGCAGCCGCCAACCACCGACGGCGGTGACACCGACTGCACGGTGAAGAACCACCGGAACAGCTGAAGAGAGGGGCGCACCCCAATGAACATCTCGCACAGGTGTGCGAAGATGGCCAATGTCATCACCGCATTGGGGGTGAGGTGCGCCATCTGGAGATCGTAGAACTCCAGGACATCCATGAAGAAATGAGAAAATGGCGGGACCAGCCCAGCCATTGCGAAGGGGAGGAAGAAGATGGACCGCCCCGGGTAGTCTGGTGCCGGGCGCCCCTCGCCCAGCATTACTATCTCCCGACCGGTGGCGGACTCCGGCATGAAGCGGCGCGGCAGTCCGGCGTGCCTCTCGTTCACGATGCGGGAAGGCGGCAGTACACTGCCGTCGAGCAGAGCAGAGCCCCGTGCCATGGCGGTGGAGGAAGAGATGATTGGGAACGAGCGCGTGTGGCGAAAGTAGGGCGTAGCAGAGAAAGAGTTAGAGCTCAGGCGGCGAAGGCAAGAGGAACAATGGCGAAAGGAAGGGAGCAAATCCTTTTCTCGATGCTTTTATACCCTTGCCATCGCTGGGCCTGGCTCCTCGTTTCTCGCGCCCACTACCTCGCTCCCTCGTATCTCGTTATCTCGCTCCCTCGTTTCCCGTGCCCCCGCTTCCACTAATCCCATTCGCCCGCTTACGGCGCATGAAGTGGATATGCGTTGGTGGCAATCGAAACGGATTGTATCGTGCGCGCGTTAATTACGCTCGCCGACCGAAGCGGCGTTACCGTATCTCCGGGCGAGACAAATCTGCTCACCCAGATTCGCGCGCTGCTCAAGTGGTGTGGCAGTCTTGAATAGACCGCCCATTATGAACAACCAAAGTTACCAATATCAATGTGCATGAATTGAGACCGTTGGGTATTTTGCCCAACTACGGAGACCGGTCCCACCTGTCACCAGGCTTTAGGGGTGGCGTCACACCTGACCGCTTCCCTGGGGAAGGGAAATTGCTCTGGCATAACGCCGGGGGCTACTGTCGGTGATATGGGACCGGGAGTATCATGACCAGAGGCTTGAGGCAGACGCAATCGCCCACGTGGCCTGGCACCTTCGGGGACGTCGGGCCCGAGGGTGAGGTGTCCGCCCTCCTCCTGATTTCCCCCGAGGGGGGGTCGGGTTGCGCTTGCCCCGGCCCCGAGGGCCGAGGCACCCCGACCCCTTAAGGAAGTCTGCGCCACATATATGGGATAAGTGAGCACAGCTGTGCTCACCTAACAGCATTTATTGCAGTCTGGTCAAGCGTGTCATGCTGCATGCAACGCAGTACAGCGCGTTCCTTTATCCGGTCTGTGACCAGTCACAGACCGGTCAGATCACGGGTTAGGTGGCGACTGGCGGTCTGACGCACGCCTTGCCCCATCCCGTCAAGACAAAAGTCTGTAGGCACTCGTCTCAAGCCGGAGCTAGCGTGTTATCTCTTAGAGATGGCACGTTAGCCCTGGTCAGATTTATACCAGGCTTCATCCTAACCATTACAGGCAAGGTGTTACACGAAGAAGGGCAAACATGCACGTTGTTAAGCTGACGCGTGGCGGACAAGAATGACCGGTCTGGCACTGGTCGCGTCATCGACAGACAGCCACGGTCCCGCGTCATCTCTGTCTTCGGGGGAGGTGGGGGTAGGTGTGGGCTGTCCCATCAGAAGGGCTCCCGGATGGAAACCGTACCGATCTCCGCCCATTAAAGAGAAAAAGAACAGTCCAGTTTGGAAAGAGAAAGGGGCATGTGGTATCCCCTTGAGATATAAAAGGAGGACCTTGCCCATTTAGAGAAGGGACTTTTTCCCTTTTGGAAGGCTGAGGGGAAAGGGAGTTAATCCTTTGTAACTTGTCCATACACAAATCCACAAAAACACAGGAGTAGGGTATTACGCTGAGCAGCGGCCCGAACCTGTATAGATCGCCGCCGTGTCTCGCGTTTTCTCCGAGCAAGCGATCTTTCCACATATAGAAAGAGCTTGAGATCTCACCCTAAGCCCCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCACGAGCTCCGTCACACCTGTAACCGGAAATTAAATGGAATCATTAGTAATTGCAAAAAAATTAACAAATGAATACGAAGACTCGTTAGTAATTCCCTGACGCTGTGTCACCTGTGACTGCCTGACCCCGGATAGGAAGACCCAGGATCATGGCGACGTCCTCCAGAGTGACCGTCAGCTCCCCGCACGGTAGGTGGAAGGTGTGTGTCTCTGGACGCCACCGGTCCACTAGGGCCGTCAGAGCAGCGGCGTTGTACAGAGGCACCGGTCGCTGCGCCATGGTCACGAACGCCAAGAGCTTCGCCCGCCGTAGGTACGGGACGTACCGGTCGTCGAACAGTATGTGCGCCGTGTGACCTCTGACTCGAAGGGTCTTCAAGCGCTGCATCAATAGACAAACATAATAACATGTTAGTCTTGTTCTATTTATCTGAGCTAAATTACGATATTTGTATGATTTTCATTCGATGAAACAGTATGTTAGTTTAAACGATAGTTACTTTTTACGAGCAGTGAAATAAAAATGAAAGAGCGAACTGAGTAATCAAGAATAATATAAAATCATAAAGATTGAAAACAATCCTTGGAGCAATGGGCAGAGTTGGCGATACTTTTTTTTATAGTTTGCAATCAATATTATGACAATTTCATTTTGTCCTCGACAAGCATTTGATTCAGAAATTGATCATGTACAAATTCCCTGCTAGGTACAG PhaseCut54: +Start +End FragmentLength FragmentNumber 1490 1634 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1488 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTTATATTGAT 1512 - 2.17 0.89 1.75 1.02 2.48 0 0 0 11.38 1.15 1.64 GTTAATGAATCTAGACATATATAT 1536 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCT 1538 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 1560 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 GTATGCGGGAAATGCTAGAATGAC 1586 + 0.39 0 0 0 0 0 0 0 0 0 0 TTACATTGTGAAACGGAGGAAGCA 1610 + 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G35920 17941 LOC_OS07G35920.4-3 osa-miR1436 1481 1501 >LOC_OS07G37140.1-2 GTTAGTCTGTGGTTTGTTTATAATTGGTTTAGTTGTTCGCTTAGAAGGCTTGCATTTTGTTGATTGCTTCATTGTGATTAAGATATCCGTAGAGCTTAACATTTTAACCAAGTGTTGAGAACCTGTGTGATCCTTATTGACCAATTAGGAGAATGAATCGCCTGAGTTTCAGGATTTTGCTTTTACAGTAGTTGTTAAGAATGGACGGGCATGCATTTGCTTTAATTTATCAACTATAGTTACCAGGAATCTGGATCATGCATGCAATCCACGGAACATATTGAGATCCTGATTGCATGTTGCTGGTGATCTCACATTGCCATTTGGACACCGATTAATGGCAAAGGGAAAATTAATGGATATTTTGCTGAATCGGAAAAGCAAAGGATTGGGAGATGGAGCTATTCTTTTGGCACACTCTATTATTTCTCCTTGTTGCTTTTTCTGTTGCCTCTGCAGTTGCTTCTGGTTATTGCTATTGCTGCTGTCACCACCGCTGCTTGCAGCCTAGATGGTAGCAATGTTATTGATTAGTGAACACAAGACGGAGGGAGGAAGTGACAGTGAGGTGGATGGAGGGGGAAGCAAGAGAGATAATTGTAAGAGGCTCCAGGGCCGCTAGGGTTTGAATATGGGGAAGGGATATATAATTTGATCTTCTGATTTTATTGGGTCATTGCTTCCTAAAGAACATTACTAGCCTTCATTCCACAATTCTTAGCTATCTGTGTAATACGGAACCTTTCATTGACCTGGTCTTGTATTCCTGGTATTGTCCGATTTACTGCACACCTGATCTTGAGTAGTGTTCAAATTTAAATCCACATCTTGATATTTGTCCAGTTGACCCTGACAACTTTAGGAAATCACTTCTATTAAAAAAAATATTTGCATAATGTTGAGGTGAAGATGTCATCACCTGGTAGATCACGCACTAATCATAATAGTATGATATACTTATGATAAGGTTGTGTCCACTTTCCTTCTTGTTCACTTGTGCTTTCTGTACTATGAATAATCTGCTTCTTATTGTTCAGTGAACAACATTGAGGTGCATAGGATTTTTATAGTACATTTTATTTTACTCAATTTGAAACTTATAATCTAGCGTCAAACAACTCATGCTGGCATCAACACTAGGATGGCTAGTGCACGCTCACTGAATTTTCAATTTGGAAGGATTTGGAATGCTAAACAAAAAATTCACACTAACTTCAGTTCAATGTAATTTTGATTCATTGATGCATTGATTTATTTCTTTGCAGTAAAAATAAAATCATAATGTATTAATTTACCAATGAATTTATGCTGAAAGTATTCGTCTTGCTAGCTTGATTAGAGGTGAAAATCTTAAAACATATAATGAGATAACTAGATAGGTTTGCTAATTTCAATGGTTATGTTCCTTCGGAATTAGATATTGACCTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGAATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTATTTACAGAGATGGCAATATATAGCTATTATTAAACTTAGAACAGGTGTAAACAAAGAAACAAAATGCAGATTACTTCCAAATATTTCATTGTTATGGATATAGCCTTGGTTACGCTTGTTCTGCCAGATAATTAAATCAGGAGAAAAGTTTGTGATTTTGGCTCATCACTAGCAAATTGTTACGGACACAAAGCCATCAGAAGCAATTTCTTTTCTGGATCAACCAATGCTTGACTAGATCTTGTCATGCCCATGTATCTTGCTCCTGACTGTTCGTATCATGCAG PhaseCut46: +Start +End FragmentLength FragmentNumber 3060 3108 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3058 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3082 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3084 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G37140 5212 LOC_OS07G37140.1-2 osa-miR1436 3051 3071 LOC_OS07G37140 5212 LOC_OS07G37140.1-2 osa-miR1436 3051 3071 PhaseCut61: +Start +End FragmentLength FragmentNumber 3065 3107 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3063 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3084 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3086 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G37140 5212 LOC_OS07G37140.1-2 osa-miR1436 3051 3071 LOC_OS07G37140 5212 LOC_OS07G37140.1-2 osa-miR1436 3051 3071 >LOC_OS07G40550.1-9 GTAATTTTGATTCATATTCAGTACATACTTTTCTGCATTGATGTTTGACTTTTGGCGTACCTTAGAAAATCTACTTTATTCCCTTCCTCTTCTTTCCTTTTTTTTTTCCGATTCTCTTGAATTTGGCATTTTTTGGAATGTCGGCTACAGGAGTCTGTTTACTCAAATGCAAATTCATATTATGAATTTTTATGTGTTGCAATTTAGAGTATGCTGGAAAGCAATTCTACTTAGCCATTTTACTAGCCTTAACCACATCAGGAATTATGTGAATATGAAGTTGTACAAATGTTTTCATGATTGTTTGACAATTTATTTGAGCTGCACTACAATAACAGATGAATTTGAGGAAAGATAAGACAACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATCGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACCTATCAACCGTTTTGGAACCATTCTAGTTCTAGGATGACAAAGTGAAGACATTTCCCGTTGTTGGTTCTATTTGTTGCTCTGAAAAAATGTATGAATTGCATTTGATGATTGCTTATTATGATAACAG PhaseCut35: +Start +End FragmentLength FragmentNumber 5237 5363 21 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 5235 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTCTCACATTCATATCGATG 5258 + 0 0 0 0.2 0 0 0 0 0 0 0 TTAATGAATCTAGATAGATAT 5279 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 5300 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATTAATATGAATGTGGGAAA 5319 - 0 0 0 0 0.25 0 0 0 0 0 0 TTAATATGAATGTGGGAAATG 5321 + 1.18 0 0 0.61 0 0 0 0 0 0 0 CTAGAATGACTTACATTGTGA 5342 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G40550 6304 LOC_OS07G40550.1-9 osa-miR1436 5223 5243 LOC_OS07G40550 6304 LOC_OS07G40550.1-9 osa-miR1436 5223 5243 >LOC_OS07G40550.2-9 GTAATTTTGATTCATATTCAGTACATACTTTTCTGCATTGATGTTTGACTTTTGGCGTACCTTAGAAAATCTACTTTATTCCCTTCCTCTTCTTTCCTTTTTTTTTTCCGATTCTCTTGAATTTGGCATTTTTTGGAATGTCGGCTACAGGAGTCTGTTTACTCAAATGCAAATTCATATTATGAATTTTTATGTGTTGCAATTTAGAGTATGCTGGAAAGCAATTCTACTTAGCCATTTTACTAGCCTTAACCACATCAGGAATTATGTGAATATGAAGTTGTACAAATGTTTTCATGATTGTTTGACAATTTATTTGAGCTGCACTACAATAACAGATGAATTTGAGGAAAGATAAGACAACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATCGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACCTATCAACCGTTTTGGAACCATTCTAGTTCTAGGATGACAAAGTGAAGACATTTCCCGTTGTTGGTTCTATTTGTTGCTCTGAAAAAATGTATGAATTGCATTTGATGATTGCTTATTATGATAACAG PhaseCut35: +Start +End FragmentLength FragmentNumber 5237 5363 21 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 5235 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTCTCACATTCATATCGATG 5258 + 0 0 0 0.2 0 0 0 0 0 0 0 TTAATGAATCTAGATAGATAT 5279 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 5300 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATTAATATGAATGTGGGAAA 5319 - 0 0 0 0 0.25 0 0 0 0 0 0 TTAATATGAATGTGGGAAATG 5321 + 1.18 0 0 0.61 0 0 0 0 0 0 0 CTAGAATGACTTACATTGTGA 5342 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G40550 6304 LOC_OS07G40550.2-9 osa-miR1436 5223 5243 LOC_OS07G40550 6304 LOC_OS07G40550.2-9 osa-miR1436 5223 5243 >LOC_OS07G40550.3-9 GTAATTTTGATTCATATTCAGTACATACTTTTCTGCATTGATGTTTGACTTTTGGCGTACCTTAGAAAATCTACTTTATTCCCTTCCTCTTCTTTCCTTTTTTTTTTCCGATTCTCTTGAATTTGGCATTTTTTGGAATGTCGGCTACAGGAGTCTGTTTACTCAAATGCAAATTCATATTATGAATTTTTATGTGTTGCAATTTAGAGTATGCTGGAAAGCAATTCTACTTAGCCATTTTACTAGCCTTAACCACATCAGGAATTATGTGAATATGAAGTTGTACAAATGTTTTCATGATTGTTTGACAATTTATTTGAGCTGCACTACAATAACAGATGAATTTGAGGAAAGATAAGACAACTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATCGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATTAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACCTATCAACCGTTTTGGAACCATTCTAGTTCTAGGATGACAAAGTGAAGACATTTCCCGTTGTTGGTTCTATTTGTTGCTCTGAAAAAATGTATGAATTGCATTTGATGATTGCTTATTATGATAACAG PhaseCut35: +Start +End FragmentLength FragmentNumber 5237 5363 21 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 5235 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTCTCACATTCATATCGATG 5258 + 0 0 0 0.2 0 0 0 0 0 0 0 TTAATGAATCTAGATAGATAT 5279 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 5300 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATTAATATGAATGTGGGAAA 5319 - 0 0 0 0 0.25 0 0 0 0 0 0 TTAATATGAATGTGGGAAATG 5321 + 1.18 0 0 0.61 0 0 0 0 0 0 0 CTAGAATGACTTACATTGTGA 5342 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS07G40550 6304 LOC_OS07G40550.3-9 osa-miR1436 5223 5243 LOC_OS07G40550 6304 LOC_OS07G40550.3-9 osa-miR1436 5223 5243 >LOC_OS08G03650.1-1 GTATGAACAGCAGCTTGCTTTCCACAACATGTTTCTCTGTCAGGCCTAATCTGCATAATTAGTTCAGCTTTTTATCTTTTTTCTTTAAATGACAGTAGTACCACTATCATGCAATTCTCAATTGCTTTATTTGTTGGTATCGTTAGTAGTATAATTATCAGCCCATAAGAGTGTTTTGCCTGTGTGCTATTGGTCATACTACTAATAAAAATGTAGTACTATATATCACTAGAAGCTTCTGTACACACCCATGGCCAAACCTCTTGCTGTTGGCTTCATCTGGGGCTCTGATTATAATATCATAACCAACTTCTTCTGGGTGGAGGGCATTAATCAAAACAATTGAGGCCAGCTAAAAACTATACACCCTTTTTTGTTTTTAGCTTGCACAATTTTCTGGAGGATTTCACTATCAATCATCCAAGGGGCAGGCTGTTAGTGCAGATAGGCTAAGATTGCCATTTCGATGCGCACAATGCTCATACCGTGTTAGAGGAGTTCAGTTGAATTAAATTTGAAAATATAGTGTTCATTTGTTTTCTTTCTCAAGAATATTCGGGATGCAGTTTGTTTGACAAATATACTGTCGATCTCGCACAACCGTTGCACGACGATGGCTGCGAGACCGCGTGGTGTCGTGCGGCGAGGCTGCGAGACCGAGCGGTCTCGCATTACCAGCGGGTGGGACCGAACGGCTGGCTGCTTCCAATTGATTAATTATCCTGATTAGCGATTATTTATTTATTAATTAATCGCTAATCAGGATAGTTAATCACTGATTATTATTTAATTGTTACTTAGGTAATTAATCATTAATTAAAGAGTAGCCAAAAGACATGGACGTTCGCTGTCGCTGATTCCATATGAGAGACCGATTGGTCTCGCTGTTCTGTTCTGCGAGACAGGGTGTAGCGCGCGACACCGCGCGGTCTCGCACTATCCCCGCGCGACATCACCTGCGTCGTCATGCTCATGTCATTTTCGCTCAATGGTTCAGCGAGATCGATGGTATATTTATGCCAAAAAAATTGCATCCTGGATATTTTTGTGGAAAAAAATGAACAATATATTTTCAAATTTATCTCGAGTTCAGTTTATGTCCAGAAACTGGAAAAAAAAACCCTTTTTAGTACTGCTTTGGAATTTATTAGAGTAAGGTTTCAAGGCATTGGCAGGTAAATAGAATGTTCACTGTGCATACTGCTTGTCCTGAATTAGTACTTATTTATAGCAGCGTCGTCCCTTCCTGAGAAATATTATTCCTTGACTTTTGGGTTTCTCATCTTACGTTTACTTGTTGAGAGTAGTATGTAACTGTAGTAGTATATGCACATGGTGAGCACTAAATGGACCAAATTTATTCCTGTGCACTTGCTCTCTCATTACAATCATAGTGGGGTCTATGTGTGATGTGTCAGATACTGGTCCTGGAGTGCACTACTAAGTCTGCAACTGTTCAATGCAATTATGCGGGATACCTTTATTTGATATAGTCAGATATGTTAATCATCACCTTTATAGGGCATTTTATCTTTTTTAAGTAAACTGTTGAGTACATTTTTGATCAGTGCCAAACTTTGACAAATGCCAAGTTATTTTTTCTTAACCAACAGTGGTAAATGTATTTTTGGACAAGAGAATAAACAGATATGGTCATTTGCTAAAAAATATTTATTTCATTCAAAACTGTCAATGATAAATACTCCCTCCGTTTTGAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAATTATATGCCTACATAAAAGTATATTTAACAATGAATCAAATGATAAAAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACAGTCAAACATGTGCTAAAAAGTCAACGGCGTCAAACATTTCGAAACGGAGGGAGTATCATCTATAGCAATTGACCGTGGGGTGGCAGAAACCTAGAAGGATCTGGTTAGGTGCCCCACACTTGTAGAGTGGCTCTTGTGTCTATTCCAGTCCCTAAACTTCTAGCTTTTTACATATGAATTTTTTGCTGGAAAAATATTGTCCAAACTGAAAAGTATTGATGACGAGCATGTTCATTATATAG PhaseCut86: +Start +End FragmentLength FragmentNumber 2629 2698 23 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 2627 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TGACCGTTCGTCTTATTCAAAAA 2650 - 0.59 0.22 0.44 0 0.25 0 0 0 0 0 0 TTTGTGAAATATGTAAAATTATA 2675 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G03650 6367 LOC_OS08G03650.1-1 osa-miR2123c 2619 2640 LOC_OS08G03650 6367 LOC_OS08G03650.1-1 osa-miR2123b 2619 2640 LOC_OS08G03650 6367 LOC_OS08G03650.1-1 osa-miR2123a 2619 2640 >LOC_OS08G18150.1-2 GTGATCCTTTTCCTAGGCTATTTCCTACACTTCTTAAGTTGCCTTAATGTATGCGATGATTGAATAATAAACATACTCCCTCCGTCCCAAGAAAACTCGATGTGACATATTTTAGAACAACGAATCTGAACAAGCCTTTGTCCAAATTCGTTGTTCTAGGATAGGTCACATCCTAGGTCACATCCTATCCTAGATTGAGTTTTTTTGGGACGGAGGGAGTACTTCTTTAATCTTCAATAACATTATATCACATCCAGGTCCATAGGATAACAAGAGTTACCATCAAATTGTTCTGCATATTATGATGTGATTCAGTCTTTTAATGAGACTGCTTTAATAGTTTTTCTAGTTGCAGTTGTGCCTTCTAATATATGCTCTGTTGAATCCAATTTATTTTGGCACTTATAGAGACACTGTCTGAGCGCTTGCAGCTTTGTTAGTGCAGGTAGTACTAACTCCATTCTTGCACCTTATTTTGGTATTATTCGCATCTTTTAGCACAATATTTTTTTTCGAGATGTTTTAGCACAACTCACTATCAAGGTGATGGTAGATTTATTTCGTGTAACAAAATATTAGGAATAATTATCATTGTTATCACCTTCTGATCTTAACTTCTCAAGGCACTCATTTCACTCAAAATCTCATGTATAATTTACAACCGAATCAATGAGCTACTACTTTCACATATTATCCATATGTTGCATAGTGATAAATACTCCCTCCGTCCCTAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTGAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATACTACTACTACTCAAGTTTTTGAATAATATTCACAAAAGTTTTTGAATAAGATGAACGGACAAACATGTTTAAAAAAGTCAACGGCGTCAAATATTTAGGGACGAAGGGAGTATAACAGTAGCTCTGTGTAGCATTAGCTAGCAATATAATCCCCTTTTATACTAGATAGGGGGTTGCAGCAATAGTGAATGCTGCATATTTGCTACATATATTTACAAAAATGTACCTAAACTCAATTGTAAGTGAAATAGCTTTGTTCAATTAGAATTAGTTTACGAAGTTTGAAGAACTTTGTGAAATTGAAGCTTTGGCTGAGAATGTTGTTTTAGAGCTGTTAGCTAAGAGTTTTACTCACAAGTTTCATCTTACTCTAGCCCAAGTTTTTTCACTCATATTTCAAGTGAGCACCAATAAATGTATTTTCATTAGGTTCTTTTGCACAGAAATAACTCTATTTTTATTGAGTGCAG PhaseCut78: +Start +End FragmentLength FragmentNumber 2574 2670 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2574 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTGAAAAAATT 2596 - 0 0 0 0 0 0 0 0 0 0 1.17 TAAGTAATTATTAATTCTTTTCCT 2620 - 0 0 0.22 0 0.25 0 0 0 0 0 0 ATCATTTGATTCATTGTTAAATAT 2644 - 3.95 1.55 5.9 1.02 5.71 0 0 0 5.51 0.16 5.85 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G18150 3813 LOC_OS08G18150.1-2 osa-miR2123c 2563 2584 LOC_OS08G18150 3813 LOC_OS08G18150.1-2 osa-miR2123b 2563 2584 LOC_OS08G18150 3813 LOC_OS08G18150.1-2 osa-miR2123a 2563 2584 >LOC_OS08G19114.2-1 GTGATATGCTATTCAATTTATTATTTCCTGTGATTTTACGGTGCCACTACCTTCGTTCTGTTCTCGGAAGCAATATAGCTAATTGCCTATAATAGATTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCATTGATTCATTAACATCAATATGAATGTGAGAAATGCTAGAATGAATTACATTGTGAAACGGAGGGAGTACATAATAAAAGTTTAGCGCATCTGCCAGGTAGCATTTTCATACAATGTTAGATACTTACATGCTATGCATCTATTCAAGATCCCTTTTCTTCTGTCATGACCTATTACTGGCAGTACTTATTTTTGGGCACTCATATGGATCTTTTCTAATGGTTCTCTGTTAAAGCTACGCATTGTTCACACATGAAGATTAAGTGAAAAAGATGACACACCCATCTTACCTTTATTTGATGGATATGCTATATTAAAACCCAATTGTATGTCCTTAGCCTCTTAGGTCATTGTATTGCACAACACCGTTTGCAGATGAGCTCAGTATATATATTGCTTATATCATTGTGTTTGCATAATAAGGTTTTGGTACTAATATGAGGTTACTATGCTCAGAGTGGTTAGATATAGAATTCATTTTGTTATTGGTCTGTAGTTTGCTTTTGGCTCTTGTTTTGTTTTTCCACAGGCCCAGCAAATATGATATAAGATAATGTTAGTCATGGTCCCTCATCTTGAAAAGGTCGCTGCTGACATTCCTCAAACAAATATATGAGCCTGTATATACCGTACTATTTAATGGTCGTCTCAAATGATAAATATATGAAAGTATTATATGTTTACCGTGTATTATGCAAGAGTACATGAGCTTGTCAGGTTGTGTGGCGAGATCAAATATATCATTGCTGATTGCTGATTTGTTGGCTACCTTGATGATGTCCATCTGAGAGCATCTGAACATATATCCATTGAAATAATCTAGTTTCACGTCCTTAG PhaseCut35: +Start +End FragmentLength FragmentNumber 3686 3734 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 3684 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 3708 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 3710 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 PhaseCut38: +Start +End FragmentLength FragmentNumber 3687 3735 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 3685 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 3709 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 3711 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 PhaseCut48: +Start +End FragmentLength FragmentNumber 3692 3734 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 3690 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 3711 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 3713 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 LOC_OS08G19114 5110 LOC_OS08G19114.2-1 osa-miR1436 3678 3698 >LOC_OS08G41300.1-2 GTGATGACGAGTTTGTGCTTTCTGGAATGGACCATTTCGATTAGTGGTAGTAGTAGTAGCTGCGGTGAGATCAGCTGGGTTTCCTGCTTGATTTTGAATTAGGTCATACGTGTTGCTCAGGTTTGACCGATTTGTGGATATGTGTAGTTTGTTTCAAATTCATGGGTTGGTTTAGTAGGCTATGGAAGTGTTTTGGATTTGCTTGAAGTATGTGGTGATTTGCTTAGTCTTGATACACACAAGTGCTATTTTGCTAACTACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTTGTGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGAAAATGGAAAATGCTAGAATGACTTACATTGTGAAATTGAGGAAGTAGTTTAGTGTCCAGTAACAAGAGACGCTTGTATAGTAACTAGATGTGGTTGGTTTCCCAGTAGCTGAATGCTCTTTCAATTGTGGTTGGTTAACCTAAATTTACCCATTTGCATGATGTTGTACGCAATGAAAGGCAAGATATCTCCCATCATTCTTGCATGTGATTACTTGAAATTAGGATTGTTGCGTCAAGAAACTGTTTTGTTGTGAAGTGTGAACATTGCTCCTAGTGCTGCCTCCTTCTATTCGTATTATCAGAACTGCAAGGCCTGTGTGCAGATATTGAGCTATGTATAGCACTACTGACAATTTTGCTATCTACTAGTCAGCTTAGCTGAGAATGTTGTTGTTGGACCAACACTTCATTGTGATATTTTTGTTTAAGTATATCGAAGTTTGTTTGCAAAGTCTGTTATGGACTTCTATGCACTTCTATTGCACCAGTTGTCCTGGTAATAGTAAACTATGTTATTGTTTCATGGATGCTAATGTGATGCCACCGTTTAAAGGTTTACTGTTATCATCCTTCATATGAGTTCCTGCATGTTATTGCTTTCATTAGTGGGCATGGCATCCTCGTTTGTAACTATGGCTATTTGGCATATTTGCTGAGACTAACTTCAACTTGTTCATACTTGTCCAG PhaseCut30: +Start +End FragmentLength FragmentNumber 550 598 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 548 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 572 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 574 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G41300 2036 LOC_OS08G41300.1-2 osa-miR1436 541 561 LOC_OS08G41300 2036 LOC_OS08G41300.1-2 osa-miR1436 541 561 PhaseCut35: +Start +End FragmentLength FragmentNumber 555 597 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 553 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 574 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 576 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS08G41300 2036 LOC_OS08G41300.1-2 osa-miR1436 541 561 LOC_OS08G41300 2036 LOC_OS08G41300.1-2 osa-miR1436 541 561 >LOC_OS09G01360.1-9 GTAAGTCGGGGCCCTTCATTGGTGATACATTTCTCTTAATTGTCACACGGATGCTGCCTTTATTCTTAATGTTACTACTATACTACTATCCTGATACTTTTACATGAAGTGTCAGCTAAGATACAAGTCCTAGGTCAATATCCAAATTCCAAATTCAAGATTTGCATGGTTCTAAATACATAGTATCTTATTAGAAGGTATCCTGTGTTTGACAGTAATGCTCTTCCAGATTCTGAAATACCAAAGATGGATGTTGTATTGGTGAACGACAAATATGTGCTTCAGGAATGGTAGGAGCTAGTGATACTACACAAATAGATTAAGACAAGACTCCAAGCAGGAAAGAGGAAGAACGAGGCGGACTAGGTCACACTTATAAAATGCTTTTTCCTGCTAAGTGAATCAAAACCAACATATGCTTTGCAGTTTGAAATATTCACTGCAAATGCATGAGTTAAGTGAAATTAATATTCTAAAAAGACCATTCTAAAATTAATATGATAAAACTCACGAAAAAAATCAAGCTTATTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGTATTTTCCACATTCATATTGGTGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATAAATATGAATGTGGGAAATGCTAGAATAACATGTTGTCTGTTATTTTGTGTTGACTTCTGTAACATTTAGACATGTGCTTCATGCTCTCTTAATTTAATTTATTTAAACCATTCTATTTTCGTTGGTCCATTCTGATTTGATGTAAACACTTTTCTAG PhaseCut25: +Start +End FragmentLength FragmentNumber 8118 8181 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 8116 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGTATTTTCCACATTCA 8137 - 1.58 1.11 0.44 2.24 0.5 0 0 0 0 0 0 TTGGTGTTAATGAATCTAGAC 8160 + 0 0 0 0.2 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G01360 11142 LOC_OS09G01360.1-9 osa-miR1436 8110 8130 LOC_OS09G01360 11142 LOC_OS09G01360.1-9 osa-miR1436 8110 8130 LOC_OS09G01360 11142 LOC_OS09G01360.1-9 osa-miR1436 8110 8130 >LOC_OS09G04670.1-1 GTATAGCCATCTTGGCAATCCTCCCCCTTCTTCCTCTCATGCGCATCTCACATCCGTTAGATTCTCGTTTTAATCTGATGGTTCGTGATTGGGGGTGAGGAAATGGGACGGGGGAAGTTGATTTGGTGATACTATAATTAGGTGATATGTTAAGTTTTTCCATGGTGTTACTTGTTAACTTCATCTGTGGTGGATTGGCTGATAAATATCTGTTTCAGTGATAGGGTATTCTATGTTGTTGATGCATATTTCATTTTATTCTCACAGATGTAACTGGGAGTTTATTTAGATATTCAACTTCCACATGTATTTGTCAATTTCTTTTAACTTGCTGCTGTTTCCATATTAATATGTTCTCATGGTGTTACATGTAGTAGTAAATTATTATGGGTGAATAAATTAGTATTTCTGTGGGGGGTAATTTGTAAATTAGAAGGGAGGTCATGCCCTCCTGTTATTAACAGCAGGGCCGGCTCTAAATTTTTGAGGGCCCTAGGCGAACTCCTTGACATGGCCCCTTAAGACGTACGCTCTCTCTATATATACACAGATGCGCTTGGCACTTTTAAAGTATAGTACTTTTAAAGCATTCATCAGCTAATCATGGTGAAAACAAATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTTCATATTTATATTGATGTTAATGAATCTAGACATATATATCTATTTAGATTCATTAACATCAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTGATAATATCCTCTATATATGTTGCTAAAAATACCAAAAAAAGCATTAAAATGGAATTAATATGGTTAGCTCCAGGGACTTCATTAATAATACTTGACAAAAGAAAAGATGACAGACATCCATTTGCTTCTCATAAAAAAAAAACTCCTTCGGGCATTTCTCGATGCAAAATCATTAATGATGGTTTCAAGATCAATATTGTCCAAGACATTCTTCTCAATGCAGCACATAGCCAAGCCATTTAATCTTTGTTGTGACATGGTTGATCTCAAATTGTTTTTCAATAACTTTAATTTTGAGAAGCTTCTTTCAGCTGAGGCTACTGTCACAGCTACAGTTAAGATGATTCGATAGGGAACTGAAACATTGATTGTGTTAATGCCCTCCTGTTATTAACAGGATGTTTTTTAAGCATACTTCATGCCCTGTTTTGAAAATTGATGTGTTATATCAAATCTGTCGACCATTGACATATTTAGGCGTCCATCTTTATGGTAGCATGTGCTAGTTTTTCTGGTTTCTCTTTAACTATCGCATCATGTAAGTCTTTCTATAGAACAATTTATGTGCTTATTTTTTTTTCTCATTTTCTTGATATATGCCCTGGGTATTAGCCATTGTATAAATTGTTCATAAGTTTTTTAAACCAAATGCACCCTTTTTTCCAG PhaseCut49: +Start +End FragmentLength FragmentNumber 1028 1154 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1026 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 TTTTTCATATTTATATTGATG 1049 + 1.78 0 0 0.2 2.98 1.06 0 0 0 0 0 TGTTAATGAATCTAGACATAT 1068 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATTTAGATTCATTAA 1089 - 0.2 0 0.22 0 0.25 0 0 0 0 0 0 CATCAATATGAATGTGGAAAA 1110 - 0.59 0 0 0.41 1.49 0 0 13.62 0 0 0 CTAGAATGACTTACATTGTGA 1133 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G04670 3781 LOC_OS09G04670.1-1 osa-miR1436 1014 1034 >LOC_OS09G07450.1-1 GTAAGCTATGTCTGTCTTTTCCAGGTTTTTTTTTTCTTTTGAGCTAAAGAGAGAATTTATATTAATGACTGATGACTGACTAGGGGGTTACACTCCTGACTTGACAAGTCAACGATCCTTATTGCCAGTTAAGCAAGCCTATTTTTTACTATGGCCATGTTTAGTTCCAAAGTTTTTCTTCAAACTTCCAACTTTTCCATCATATCAAAACTTTCCTATACACGTAAACTTCCAACTTTTCCATCACATCGTCCAATTTCAACTAAACTTTTAATTTTAGTGTGTACTAAATACAGCCTATGTCTTTTTCTTGTGCACCTGCACACTCTGCAAGCACTACACTCTGCAAGTACTTTAGAAATCAGCATTATCCATGAGGATCCTTATGGACTCCTTATCAAGTTAAAACAACCACTAAAACTAGCACAGTTTTTATGGCACTTTTAACGTTGCCTATAATACTTTGCTATATAGACATTTTTAGGCATATTTTGTTAAATCTATCTTGTAGAGGTATATTTTTGGTACTTCAAAATTTTTCTCATATGTAAAGTCATTTTCTCAAGACATCTAAACCTCGGTTGAGTCACTTTCTAAATATTAATATGTGCATATATAGAATTAACACAACACATACATTTACAAGTAATGATATAAGGTTCAGATAATTAGTGCATTGAAGATAAAAATAATATACTCACGAGTTTAAGGATTGGTAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGTTGTTAATGAATCTAGATAGATATATATATTTAGATTCATTAACATCAATATGAATATGAGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAGCAAGGAAATATATTTTTTTCTATTTTCACATTGCTTTGCTATAGGTATGGCAAAATTTAATGCCTGTACAGACATTAAAAAAATACATATTCTTTTCTAAAGATAATTTATCAAAATACATTTATTAGACATATTTTTAAAAGGTCTCTGCTGCATTGTAAAGGCATGTTTGCCTCTATATAGTACTAGAAAAATATCTCCACAAACGCAGGCTGTGTTTCTAAAAAAAAACTCCACAAAATATTTTTTTTGTAGTGGTTGTTTCTAAGATAATCAGCATGCGCACCAATTTAATCGTCACTGGCGTATATCTAAACAACTTGCTTCAACCTACCCTGCATAACTGCACTGATACCGTTTTGTATGCACTGATAATTCTTTGATTATCATTCCTGTACTTGCTTCACATGTTTCTTTTCTGAATCCAATATCAACATTAACCTTTGCGTAGCCTTCTGTCGGGTCTTGCCATTTATTATTTGCATAGCAACATTATATTCTTCAAATTTCACTATTTTTGTCCACATACAGAGGCCCCATACTGTTAACATCATCAGTCCATTGTCGGACAGGCAATATGTTACCTTCAAATTGACTGAATCTGAAATTGTGGCCCTTCCATACTATAGTAGAATTCTTGCTTCACTGCAAGATTCAGATTATGAAATCCTGGTCTGGTTATGCTTCACCGCAATAATTCTTTTGCCTACTTTGGGACCACCATTTTCAGTTACTTCAATTAAGGCGTGTTCGGTTAGTTCCTCCACAAGAGGATTGAAGAGGAATCGGAGACGATTTATTTCACACCTTTTGAGGGGATTTATTTCTCGATGGGGAATTGCATGTTGTCATCTCTAATTAAGCTCACAGTAGCAGTGGCACAATGCAAAAGATTAGTACCACCATCGCCAGCTTGTTTGCGGTTTAAAAGGATGAAAAGCCCAATTACAGTACAAAGTATTGCAGTCTTAACAACTTGATTTGTATCTGAACCCTTTTTAAACCTTGAACATTACAATTAAGGCTGAAAAAGAACTCGAGTCTCACATGCTACTCGTGCTCCAGACGATCAAGCCGAGCTCGGGCTGCCTATGCCAAAGCTCGTGAGCTTTGTCAAGCCTCCTAATCGTTACATGTTACAGCTCTCAGTAACTAAAACATGCTGGAGCTGATATATCTTATATATTGATACATTGAAATCTTCATCTGAAAATTTCACCCTTTTTTTCATTCTCAG PhaseCut75: +Start +End FragmentLength FragmentNumber 765 831 22 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATTC 763 - 0.39 0 0 0.61 0 0 0 0 0 0 0 TAGCATTTTCCACATTCATATT 785 - 2.17 1.11 0.66 3.05 0 0 0 0 0.37 0 0 TGTTAATGAATCTAGATAGATA 809 + 0.2 0 0 0.2 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G07450 4505 LOC_OS09G07450.1-1 osa-miR1436 755 775 LOC_OS09G07450 4505 LOC_OS09G07450.1-1 osa-miR1436 755 775 PhaseCut83: +Start +End FragmentLength FragmentNumber 767 830 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTTCACAATGTAAGTCATTCT 765 - 4.54 1.99 0.66 8.35 2.98 0 0 0 0.73 0 0.23 AGCATTTTCCACATTCATATT 786 - 3.95 2.88 0.66 4.28 1.24 0 0 0 0.37 0 0 CATTTTCCACATTCATATTGT 788 + 0 0 0 0 0 0 0 0 0 0 0 TGTTAATGAATCTAGATAGAT 809 + 0.59 0 0.22 0.41 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G07450 4505 LOC_OS09G07450.1-1 osa-miR1436 755 775 LOC_OS09G07450 4505 LOC_OS09G07450.1-1 osa-miR1436 755 775 >LOC_OS09G19940.1-5 GTACATCTATATTTGGCCAAATCAACTTAGTTCTTCAAACATAGTTTCTGGTTATAATTCTACTACATTTTCTTGTATTTTGTTCATAATTTAGTATACATATTAAGTTCTAGTACTCCCTCCGTTTCACAATGTAAGACTTTCTAGAATTGCCCACATACATATAGATGTTAATGAATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTATTAGTTTTCAGTTATATTTATCATTTTCAGAAATGAAAATCTTCACTGATTTATTAGTGTATTTCAGAAACCTGCAACTTATATGGTTACAATATCTGTTTCCTACATCTTTAAGTCAGGTTTTCAGTTAGCAACAACTTCAACAATCAGTTTCCAGGCCTTCTGGCAAAGTGGGTCCACTTATCATGCGCATGGTCAAGTTGACCATTACAATTTACCATGTGTACAAACTGGACATGCACATATGGCTCCCTATTGGGGCTAGGGAGAGGAGATAACAATATGGGTCCTAGGATCAAGGTTTAACTAAAATAGAGTTAGTTATGCACTTACTTGATGGTGGCTTTACCCTGCGTGGCGCACTCTCTTCCAAGACCACGTCATAAGAGCAACTCCAGTGTGGGGCTTAAAATGATTTTAATGCAAAAAGATCGAACTGTGTACACTGTGGCAGTCGACGCATGCATGTCAGAGCAAAAATCAAACTCCAAAGTATATTCAAACTCAACCGAGTAAATAGTTCGTTGCCCTGGGCCATTGGCACATGCAGGCAGGGCAGAATGTAGTGATTGGAGGAACTTTTTTCAACATGGGTCCCACGATTCGATTCAACACTACAGCTATCGAACCAAACCTTTATTCAACTTCGGTGGATTGTAGCAGTCGAATCAGCAGTGGAGCTGCTCTAAGGCCACTTTGCATTGTAAATGCCCTAGCAGTCCTGAGTTGGCCGTTTGAGAAATACAACTGAACCTGCCTTGTCAAATGGTTTAGATGGTAGCAGAATTGCAGTTCTGTGAACAAAATTTGTGCACTGATTTTGTGGTAGCAGAATTGCTGAAATCATCCCCTGAAGTTGTAGATAACTGATAGTTATGTTAAATTTCTGTTATCACATTTACTCTTGATTTGTTGCTATTATTCTTAATTGTCTACTCATTATTGCATATTCTTTTTCAG PhaseCut13: +Start +End FragmentLength FragmentNumber 2069 2213 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 2067 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AATTGCCCACATACATATAGATGT 2093 + 0 0 0 0 0 0 0 0 0 0 0 GTTAATGAATCTAAACACATACAT 2115 - 0 0 0.66 0 0.25 0 0 0 0 0 0 TAATGAATCTAAACACATACATAT 2117 + 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTAGATTCATTAACATCTAA 2139 - 0.39 0.22 0 0.2 2.73 0 0 0 0 0.33 0 GAATGTGGGCAATGCTAGAAAGTC 2165 + 5.92 4.43 5.9 1.63 4.72 0 0 0 0.37 49.18 2.1 TTACATTGTGAAACGGAGGAAGTA 2189 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G19940 5562 LOC_OS09G19940.1-5 osa-miR1436 2060 2080 LOC_OS09G19940 5562 LOC_OS09G19940.1-5 osa-miR1436 2060 2080 >LOC_OS09G19940.2-4 GTACATCTATATTTGGCCAAATCAACTTAGTTCTTCAAACATAGTTTCTGGTTATAATTCTACTACATTTTCTTGTATTTTGTTCATAATTTAGTATACATATTAAGTTCTAGTACTCCCTCCGTTTCACAATGTAAGACTTTCTAGAATTGCCCACATACATATAGATGTTAATGAATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTATTAGTTTTCAGTTATATTTATCATTTTCAGAAATGAAAATCTTCACTGATTTATTAGTGTATTTCAGAAACCTGCAACTTATATGGTTACAATATCTGTTTCCTACATCTTTAAGTCAGGTTTTCAGTTAGCAACAACTTCAACAATCAGTTTCCAGGCCTTCTGGCAAAGTGGGTCCACTTATCATGCGCATGGTCAAGTTGACCATTACAATTTACCATGTGTACAAACTGGACATGCACATATGGCTCCCTATTGGGGCTAGGGAGAGGAGATAACAATATGGGTCCTAGGATCAAGGTTTAACTAAAATAGAGTTAGTTATGCACTTACTTGATGGTGGCTTTACCCTGCGTGGCGCACTCTCTTCCAAGACCACGTCATAAGAGCAACTCCAGTGTGGGGCTTAAAATGATTTTAATGCAAAAAGATCGAACTGTGTACACTGTGGCAGTCGACGCATGCATGTCAGAGCAAAAATCAAACTCCAAAGTATATTCAAACTCAACCGAGTAAATAGTTCGTTGCCCTGGGCCATTGGCACATGCAGGCAGGGCAGAATGTAGTGATTGGAGGAACTTTTTTCAACATGGGTCCCACGATTCGATTCAACACTACAGCTATCGAACCAAACCTTTATTCAACTTCGGTGGATTGTAGCAGTCGAATCAGCAGTGGAGCTGCTCTAAGGCCACTTTGCATTGTAAATGCCCTAGCAGTCCTGAGTTGGCCGTTTGAGAAATACAACTGAACCTGCCTTGTCAAATGGTTTAGATGGTAGCAGAATTGCAGTTCTGTGAACAAAATTTGTGCACTGATTTTGTGGTAGCAGAATTGCTGAAATCATCCCCTGAAGTTGTAGATAACTGATAGTTATGTTAAATTTCTGTTATCACATTTACTCTTGATTTGTTGCTATTATTCTTAATTGTCTACTCATTATTGCATATTCTTTTTCAG PhaseCut13: +Start +End FragmentLength FragmentNumber 2069 2213 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 2067 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AATTGCCCACATACATATAGATGT 2093 + 0 0 0 0 0 0 0 0 0 0 0 GTTAATGAATCTAAACACATACAT 2115 - 0 0 0.66 0 0.25 0 0 0 0 0 0 TAATGAATCTAAACACATACATAT 2117 + 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTAGATTCATTAACATCTAA 2139 - 0.39 0.22 0 0.2 2.73 0 0 0 0 0.33 0 GAATGTGGGCAATGCTAGAAAGTC 2165 + 5.92 4.43 5.9 1.63 4.72 0 0 0 0.37 49.18 2.1 TTACATTGTGAAACGGAGGAAGTA 2189 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G19940 5562 LOC_OS09G19940.2-4 osa-miR1436 2060 2080 LOC_OS09G19940 5562 LOC_OS09G19940.2-4 osa-miR1436 2060 2080 >LOC_OS09G28040.1-2 GTACACTTTTCTTTGTGGGTACTTACTACCCCCATCCCCTTCTGAAACCTCTGCAGCATAATGCACAATAGCTCAACAACTTGATATTTTTTTATTTTATGTATGACTTACTACCTTCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCATATTCATATTGATGCTAATGAATCTATATAGATATATATGTCTAGATTCATTAACAACAATATGAATGTGGGAAATGTTAGAATGGCTTACATTGTGAAACGGAGGGAGTAGCATTGAAGCTTGTAATATTTACAACATAACCTTAGACTAGATAAATAGAAAAGATAACTGGCTAATGGCTATTGCAAGTTTGCTTCTGTAGTTCTGTTGTCCTGGACATGAATATGTTTTGTGGTTGAAAATGGTAG PhaseCut40: +Start +End FragmentLength FragmentNumber 1025 1145 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1023 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCTCATATTCATATTGAT 1047 - 4.54 0 6.99 1.22 5.21 0 0 0 13.95 3.45 5.14 CATTTCTCATATTCATATTGATGC 1049 + 0 0 0 0 0 0 0 0 0 0.16 0 GCTAATGAATCTATATAGATATAT 1071 - 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTAGATTCATTAACAACAAT 1095 - 0.2 0 0 0 0 0 0 0 0.37 0 0 GAATGTGGGAAATGTTAGAATGGC 1121 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G28040 4404 LOC_OS09G28040.1-2 osa-miR1436 1016 1036 LOC_OS09G28040 4404 LOC_OS09G28040.1-2 osa-miR1436 1016 1036 LOC_OS09G28040 4404 LOC_OS09G28040.1-2 osa-miR1436 1016 1036 >LOC_OS09G29340.1-1 GTGGGGGCTTTGTTACAAGCTACTCCCTCCGTCAAAAAAAAGGCAAACCCTGGGTTTCCGTGTTCAACTTTGACTGTCCGTCTTATATGAAATTTTTTTATAATTCGTATTTTTATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTAATTTTTTTTCATAATTTTTTCAAATAAGACGGACGGTCAAACGTTGAGCACGGAAACCAGGTGACGGAGCGTGGGGCTCCTCACCGGTTCGTCCCCGCGCCCACTGCGGCCGTATTCATTCTCCCAAGGCGAGTTTTCACTTACCCGTTTCTTTTTGTCTTCTGGTTTTTCTTCCGCTTTCAG PhaseCut49: +Start +End FragmentLength FragmentNumber 95 191 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCAACTTTGACTGTCCGTCTTATA 93 - 0 0 0.22 0 0.25 0 0 0 0 0 0 TGAAATTTTTTTATAATTCGTATT 117 - 0.2 0 0.22 0.2 0 0 0 0 0 0 0.7 AAATTTTTTTATAATTCGTATTTT 119 + 0 0 0 0 1.99 0 0 0 6.24 0 0.23 TTTATTGTTGTTAGATGATAAAAC 141 - 0.99 0 1.09 0.2 5.21 0 0 0 0 4.61 0 TATTGTTGTTAGATGATAAAACAT 143 + 4.74 1.11 6.99 1.43 65.02 0 0 0 0 6.74 0.23 ATGATTAATATTTTATGCGTGACT 165 - 0.39 0 0 0 0 0 0 0 0.73 0.16 0.47 GATTAATATTTTATGCGTGACTTG 167 + 0.2 0 0 0 0 0 0 0 0.37 0.16 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G29340 2241 LOC_OS09G29340.1-1 osa-miR812m 87 110 LOC_OS09G29340 2241 LOC_OS09G29340.1-1 osa-miR812l 87 110 LOC_OS09G29340 2241 LOC_OS09G29340.1-1 osa-miR812k 87 110 LOC_OS09G29340 2241 LOC_OS09G29340.1-1 osa-miR812f 87 110 >LOC_OS09G32800.1-2 GTAAGTCCCGGCCGAATCGCGGCCCCCGATCTGCCCGCTTTGGGCTTAGGGTTTGTTGATTGGGAGGGCTGTGTGGGTTTGTGATGCGCTTGGGAGTCGAATTGGTTGGTGGGATGGGGGATGATTTGGTGATGGCTTTGGTTGATTTAGCTAGGGTTTGGTGGCTGGATTCTTGGGGGGTGGTTTGGGGAGATAAAGTAGGGTTTACTTGTCGTAAGGTCTTGATTGTAGTAATTTTAGGGCAACTATTTTTTAACTCGTGCAGTCTGTACACAACATGGTTTTACAGTATTGCAATTAAGGTACGATATGTAATCAGTAAATTTTCTTGATCCATAGAACAGAGACATTGTTGGGTAGTCGTGCTCGTGGGTTTAACTCCTAGTGTATGCTCATATTTTGTTTGAGTTTAGTGTTGCCCTTGTCTTAGGGTGTTCGATAGGCAGTGTTAGAACATTTATGTACACTATTTCATTCATCTATAGGAATGGTTTGTTCGAATGATTCACTGGGATATGAACATAGGCTGAGGAAATGAAAGCTTGTCGTTTTAAATTGCTGATGTTGTTTGTCTTTTGGGATTGTTTTACCATGCTTGGTGACCTCGGCTTACCTTTGTTCAGTGATTTTGAAAATCGATTTTCTTTTGGGTGGTACCTCTGTTTTTAGCACATAATCTTGCCAAGAGTGAGTGGCGATTTTACCTAATGTAGTCTCCATAAGCATGGTTTTGTGAAAAGGGTAGATAGCACTTACTGTACACTACATAACTACATACAAGTATAACTTAACATTGATGACTTCATTTAGTTGAGCCTTTTCCATGTTCTCAATTCTAGTCTGAATCTGGTCCAATAGAACCATACCATGTGATATTACTTTCTCCTGGAACTACTTGAGTTTCTTCTGTAGTTTCAAACTTGTTATAGAAACATGTTCAGAAAAGCTTTTATTGTTCCCTACTGTTAACTACGTGATAATACACAATTAGTTTATTAAGTCTACTGGTGATAATACGCTGCACTTCTCTAATACCCAATTAGTTTATTAAGTCTACTGGTGATAATACGCTGCACTTCTTTTATTTGGCATGGTTAGTTTGTGATTACACCGATATATTTTTGAGGTGCTATAGGTTACTTTCTTCTAAATTTATTATCTGCTTGCATGGAAGTTACTGAGCACCTTTAATCATGCCACTGCGTGTTACTCCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCCCATATACATATAGATGTTAATGAATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTATTTTTTTTTGCGGGGAAAAAACGGAGGAAGTCTTGTTCTTTATTGCTATGACATTCCAATATGCTCGTTATCAATAATACAAAATTAAGACATTTTTTCTTTTTTTCGTGTTTAG PhaseCut38: +Start +End FragmentLength FragmentNumber 1576 1720 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 1574 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AGCATTGCCCATATACATATAGAT 1598 - 0.79 0 0.87 0 0.99 0 0 0 0.73 0.49 0 GTTAATGAATCTAAACACATACAT 1622 - 0 0 0.66 0 0.25 0 0 0 0 0 0 TAATGAATCTAAACACATACATAT 1624 + 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTAGATTCATTAACATCTAA 1646 - 0.39 0.22 0 0.2 2.73 0 0 0 0 0.33 0 GAATGTGGGCAATGCTAGAAAGTC 1672 + 5.92 4.43 5.9 1.63 4.72 0 0 0 0.37 49.18 2.1 TTACATTGTGAAACGGAGGAAGTA 1696 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G32800 3564 LOC_OS09G32800.1-2 osa-miR1436 1567 1587 LOC_OS09G32800 3564 LOC_OS09G32800.1-2 osa-miR1436 1567 1587 >LOC_OS09G32800.2-2 GTAAGTCCCGGCCGAATCGCGGCCCCCGATCTGCCCGCTTTGGGCTTAGGGTTTGTTGATTGGGAGGGCTGTGTGGGTTTGTGATGCGCTTGGGAGTCGAATTGGTTGGTGGGATGGGGGATGATTTGGTGATGGCTTTGGTTGATTTAGCTAGGGTTTGGTGGCTGGATTCTTGGGGGGTGGTTTGGGGAGATAAAGTAGGGTTTACTTGTCGTAAGGTCTTGATTGTAGTAATTTTAGGGCAACTATTTTTTAACTCGTGCAGTCTGTACACAACATGGTTTTACAGTATTGCAATTAAGGTACGATATGTAATCAGTAAATTTTCTTGATCCATAGAACAGAGACATTGTTGGGTAGTCGTGCTCGTGGGTTTAACTCCTAGTGTATGCTCATATTTTGTTTGAGTTTAGTGTTGCCCTTGTCTTAGGGTGTTCGATAGGCAGTGTTAGAACATTTATGTACACTATTTCATTCATCTATAGGAATGGTTTGTTCGAATGATTCACTGGGATATGAACATAGGCTGAGGAAATGAAAGCTTGTCGTTTTAAATTGCTGATGTTGTTTGTCTTTTGGGATTGTTTTACCATGCTTGGTGACCTCGGCTTACCTTTGTTCAGTGATTTTGAAAATCGATTTTCTTTTGGGTGGTACCTCTGTTTTTAGCACATAATCTTGCCAAGAGTGAGTGGCGATTTTACCTAATGTAGTCTCCATAAGCATGGTTTTGTGAAAAGGGTAGATAGCACTTACTGTACACTACATAACTACATACAAGTATAACTTAACATTGATGACTTCATTTAGTTGAGCCTTTTCCATGTTCTCAATTCTAGTCTGAATCTGGTCCAATAGAACCATACCATGTGATATTACTTTCTCCTGGAACTACTTGAGTTTCTTCTGTAGTTTCAAACTTGTTATAGAAACATGTTCAGAAAAGCTTTTATTGTTCCCTACTGTTAACTACGTGATAATACACAATTAGTTTATTAAGTCTACTGGTGATAATACGCTGCACTTCTCTAATACCCAATTAGTTTATTAAGTCTACTGGTGATAATACGCTGCACTTCTTTTATTTGGCATGGTTAGTTTGTGATTACACCGATATATTTTTGAGGTGCTATAGGTTACTTTCTTCTAAATTTATTATCTGCTTGCATGGAAGTTACTGAGCACCTTTAATCATGCCACTGCGTGTTACTCCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCCCATATACATATAGATGTTAATGAATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTATTTTTTTTTGCGGGGAAAAAACGGAGGAAGTCTTGTTCTTTATTGCTATGACATTCCAATATGCTCGTTATCAATAATACAAAATTAAGACATTTTTTCTTTTTTTCGTGTTTAG PhaseCut38: +Start +End FragmentLength FragmentNumber 1576 1720 24 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGACTTTCT 1574 - 55.89 26.79 49.38 13.44 10.18 0 0 0 13.95 21.55 6.08 AGCATTGCCCATATACATATAGAT 1598 - 0.79 0 0.87 0 0.99 0 0 0 0.73 0.49 0 GTTAATGAATCTAAACACATACAT 1622 - 0 0 0.66 0 0.25 0 0 0 0 0 0 TAATGAATCTAAACACATACATAT 1624 + 0 0 0 0 0.25 0 0 0 0 0 0 ATGTCTAGATTCATTAACATCTAA 1646 - 0.39 0.22 0 0.2 2.73 0 0 0 0 0.33 0 GAATGTGGGCAATGCTAGAAAGTC 1672 + 5.92 4.43 5.9 1.63 4.72 0 0 0 0.37 49.18 2.1 TTACATTGTGAAACGGAGGAAGTA 1696 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G32800 3564 LOC_OS09G32800.2-2 osa-miR1436 1567 1587 LOC_OS09G32800 3564 LOC_OS09G32800.2-2 osa-miR1436 1567 1587 >LOC_OS09G33790.1-1 GTCAGTGCTGCTCCCCATCCCCCCTTCGATCTCTTCTCCTGCCCGTTCCGCTCTTGCGCTGCAGAATGATCCGGCTGATGTTGCAATAGGATTTAGGCACAGCGAAGTTATCGAATTGATAGGGTGAATGAATGCGCGACATGAATCATTTTGGGGATTTTGCTGGAGCAATTGTCGCAATTCAGGAATTTGGGAGTAAAGGTGGTGCCATTTTTTCACGTATCGCATTGGATGGAAGATTTAGCTTTGCTTTCAATAGCTAATGAATTTTCCACCGGCGCGAACAATTCGATCGGTTTTGCCTTGTGTTAATTACAAAATGTTCTACCTCTACCATCCAAGGGCCAAACAGGGGGCACGTTTCATCAACTATTGATGAGTATGGGTCCACTGGATATTAGGATGATTGTGAGATTCACCTGTTCTGCAGTTTGCACCTACCAGAATGGCTGACTTTGTCTGTTACAAATAAAAATGGGCTTTAAGGTAGTAGGCTATGCGATTAATTGGCTAGGCTTTATGATTCTTTCTGAAACAACTAGGCTTTATCATTTTTTTCGAAACAACTAGGCTTTAATATTCAGATAGTTGGTGTTCTACAGCCAGCAGTTTATGCTCTTGCTGGCTCGTTTATAGGTTTGGAACATCCATTTGATGGGAGAGTTGCTTGAGTAACGTGGTGTTATCCTGTTTCGATCTTTGTTTAGAATATATTATGAAAAGTCAATGGTCAAATGTTTGGTGTGTGGATTTGTTTAGTTACTCATTTAATACAAGGTCAAATGGAGACGGTTCTTCTAGTCTACAAAGAGGAAATGGTCTGTTACTTTGGAATATGGGAATTATTAGAACTTCTTAGTATCATGCCGTCTTTTTTTAAACGATGCACTTATGTCGGTTCAATGAAGCTAAGGCATTTGTTTCGTTGGTATAAAAATGCCATATCTTTGTGGGATAGAACTTTATGCTTTATGCATAAATAGTTAGTATTTCCTCCGTTTCACAATGTAAGTCATTTTAACATTTCCTACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATATGAAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTAGTTACCTTCGAGCTATTTTTTTTTTTTTAAAAAAAAGCGGAAACTAGAGTGTCACTAAAGGATGAATTACTTGTGAGACCTACCCTGGTGTTGGGAGAGAGTGGTGCCCCTAGGCTCTAGCTGTCTGCAGATCTCCTTAAAACTATGTGTAAAGGAATTATGGAATAACTAATACTTCTTCTGTTCTTTTGATAAGAAATGTTGTTGCTACATATGCTGGATTAAACTAGCAATGGAACAGTATAAATTCAAAGATATTTTCGTCACTAACACACAAGAATAATCGATGATGCTAAATTGTACTGACATAACTAAGACTTCTGCAATGACTACTTTCCTATTTTTCAGGTTTGACATGAAAGCGTTTGCGTGTTTCATTGCTTCCTTTTGTGTAATGTAATCATTGTTAATATTTGACTCTGCAG PhaseCut61: +Start +End FragmentLength FragmentNumber 1477 1573 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 ATTGATGTTAATGAATCTAGATAG 1477 + 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 AGATATATATGTCTAGATTCATTA 1499 - 0.2 0 0 0 0.5 0 0 0 0 0.16 0 ATATATATGTCTAGATTCATTAAC 1501 + 0.2 0 0 0 0.25 0 0 0 0 0 0 ACATCAATATGAATATGAAAAATG 1523 - 0.2 0 0 0 0.5 0 0 0 0 0 0 ATCAATATGAATATGAAAAATGCT 1525 + 1.78 1.11 2.4 1.22 2.23 0 0 0 7.34 1.32 2.34 AGAATGACTTACATTGTGAAACGG 1549 + 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G33790 3252 LOC_OS09G33790.1-1 osa-miR446 1460 1483 >LOC_OS09G37710.1-3 GTAAGCAGCAACAGAAATTTGAGAATGTTGTATCACAGTTTTGAGTTGGGGCAATATATGTATTTCATTTCGGACAAAACAATGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTACCACATACATATTGATGTTAATAAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGAAAAGGAGGGAGTAGTACTTATATATACCATAACCATATGGTGTAAACACATGATAGAGTAACACCTGACATTGGCATGATTTGGAGAACTACTGTTAAATTTTGCATTCTTTAGAAAAGGAAATACCAATCTAGGTAAATGTTGATATAAAGATCTTGATATAAAAATGTGCTTATATATTCTTGTGACTTATGGCTGTTCTTGTTGATTATCAACCAG PhaseCut13: +Start +End FragmentLength FragmentNumber 1532 1637 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 1530 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTACCACATACA 1551 - 0 0 0 0.41 0 0 0 0 0 0 0 TTGATGTTAATAAATCTAGAT 1574 + 0 0 0.22 0.2 0 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 1593 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 1595 + 0 0 0 0 0.25 0 0 0 0 0 0 TTAACATCAATATGAATGTGA 1616 + 2.76 0.66 1.53 2.04 1.49 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G37710 5194 LOC_OS09G37710.1-3 osa-miR1436 1524 1544 LOC_OS09G37710 5194 LOC_OS09G37710.1-3 osa-miR1436 1524 1544 LOC_OS09G37710 5194 LOC_OS09G37710.1-3 osa-miR1436 1524 1544 >LOC_OS09G37710.2-4 GTAAGCAGCAACAGAAATTTGAGAATGTTGTATCACAGTTTTGAGTTGGGGCAATATATGTATTTCATTTCGGACAAAACAATGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTACCACATACATATTGATGTTAATAAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGAGAAATGCTAGAATGACTTACATTGTGAAAAGGAGGGAGTAGTACTTATATATACCATAACCATATGGTGTAAACACATGATAGAGTAACACCTGACATTGGCATGATTTGGAGAACTACTGTTAAATTTTGCATTCTTTAGAAAAGGAAATACCAATCTAGGTAAATGTTGATATAAAGATCTTGATATAAAAATGTGCTTATATATTCTTGTGACTTATGGCTGTTCTTGTTGATTATCAACCAG PhaseCut13: +Start +End FragmentLength FragmentNumber 1532 1637 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 1530 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTACCACATACA 1551 - 0 0 0 0.41 0 0 0 0 0 0 0 TTGATGTTAATAAATCTAGAT 1574 + 0 0 0.22 0.2 0 0 0 0 0 0 0 ATAGATATATATGTCTAGATT 1593 - 0 0 0 0 0.25 0 0 0 0 0 0 AGATATATATGTCTAGATTCA 1595 + 0 0 0 0 0.25 0 0 0 0 0 0 TTAACATCAATATGAATGTGA 1616 + 2.76 0.66 1.53 2.04 1.49 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS09G37710 5194 LOC_OS09G37710.2-4 osa-miR1436 1524 1544 LOC_OS09G37710 5194 LOC_OS09G37710.2-4 osa-miR1436 1524 1544 LOC_OS09G37710 5194 LOC_OS09G37710.2-4 osa-miR1436 1524 1544 >LOC_OS10G04880.1-1 GTGAGCGATGGCAGCAAGCGAAGTTCTCCTCTGCAGTGAGCGACTACACATCCTTTTTAACTGTTAAAACAGCAGGAGAGGCTCCTACTACACAAATATATTAAAATAAAAGGGCAATATACAAGGGAAACTGTACAGGGGGAATATAATAGAAGGGAAAGAAAGAAGAAAAGACTGACTGAAAGGCAAGCTAGTTAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTTCCACATTCATATTGATATTAATGAATCTAGATAGATGTATATGTCTAGATTCATTAACATCACTATGAATATGGAAAATGCTAGAATGACTTATATTGTAAAACAGAGGGAGTATATGTTATTAATCCATGATTGCCCCGCAAAAAAAAATCCATGATTGCTACAATGGTTTTCCTGTCTCCTTTACTCTATGTGTATGTCTCCTTTACTCTATGCGTATGCAG PhaseCut44: +Start +End FragmentLength FragmentNumber 413 533 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 411 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AACATTTTCCACATTCATATTGAT 435 - 8.69 3.76 8.09 1.43 14.15 0 0 0 16.89 5.1 40.22 TAATGAATCTAGATAGATGTATAT 461 + 0.2 0 0 0 0.25 0 0 0 0 0.16 0 ATGTCTAGATTCATTAACATCACT 483 - 0 0 0 0 0 0 0 0 0 0.16 1.87 GAATATGGAAAATGCTAGAATGAC 509 + 1.58 1.11 3.28 0.41 0.99 0 0 0 0 8.55 0.94 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G04880 795 LOC_OS10G04880.1-1 osa-miR1436 404 424 LOC_OS10G04880 795 LOC_OS10G04880.1-1 osa-miR1436 404 424 PhaseCut48: +Start +End FragmentLength FragmentNumber 413 533 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 GTTTCACAATGTAAGTCATTCTAA 413 + 0 0 0 0 0 0 0 0 0 0.33 0 AACATTTTCCACATTCATATTGAT 435 - 8.69 3.76 8.09 1.43 14.15 0 0 0 16.89 5.1 40.22 TAATGAATCTAGATAGATGTATAT 461 + 0.2 0 0 0 0.25 0 0 0 0 0.16 0 ATGTCTAGATTCATTAACATCACT 483 - 0 0 0 0 0 0 0 0 0 0.16 1.87 GAATATGGAAAATGCTAGAATGAC 509 + 1.58 1.11 3.28 0.41 0.99 0 0 0 0 8.55 0.94 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G04880 795 LOC_OS10G04880.1-1 osa-miR1436 404 424 LOC_OS10G04880 795 LOC_OS10G04880.1-1 osa-miR1436 404 424 >LOC_OS10G23204.1-2 GTACATTGTTTATATGTGACACTAGACCTGTACTTTTGTGATAACTTTGTTACTAAATTTGTAGTTTTGTGATAGTCCACCTTAAATCTGCAGTTCTGTGAGAAAATTAAATCTGTAATTTTGTGATACATCATCTCAAATCTATAGTTTTATGATAATTTGGCTAAAATATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATAGTGATGTTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAATGGAGGAAGTATGTAGTTTTGTGAAATTTACTCTGTGTTTTATTGTCATTTAATTGTACCTGTTGTTAACACCCAAATTCGGCACCTAGATTCGAAATAGGAAAACATCGCCAAAATTTGGAAATGATTGGTTTCCTTCACAGAGCCGATCTGACCGCTGCCTATGGGTCGGTCTTACCGGTGGTGTGTGGCCGGTCAGACCGATTCCAAGTTGAATTTCACCAAGTCTCGGGTTTCCTTGCTTGGGTTTCCTTGCTTGGTGAGGTATTTTTAAAGTTCTAATTGGTCTCTACCCTGAGTTTGATGTGGAGGAGATTGTAGGAGGCAAGACCAACCCCTTTATAAGGAACAAGACCAAGGCCGGTTCAATTGAACACACAATCTACTTTGAACACAATTAGCCAATTGAATCACTTTTTCAATATCATGTCTACTTTTTTGCTTAGTTCTAGCCTAGTTTTGTTCATCTTTGTCGATTTGCGCAGTAAATCGCCCACCTTCGCTGTGAGAGTGCGAAATCCCTCTGTAGGTTCGGCCCGTAAACCCTGTTCGCCCACAAGACGGGTGTTTATCCTTGTTTCATCTAAATTGGCTCCGCTAGCCTGTTTAATCTTGCAAAACCCATCTTGGTTTAGCTTTGTCTAGATCAAGGTGTTTGACGACTCCATATCACCGCAAGGCATTTAGGTGTCTCGATCGTGCTTGTCGACTTGAGCAAACAAGTTGTCAACACCTGTGCTGAACAAAGTAGAGATTATTTCCTCACCCCATTGACTATTTTAGTAGCTTCCATTCAAGAATAGCTTCTATTATGCTACTCAGCGGTCCTAGCTGTACTCATAACTATATTATTTTGATAAGTTTGATCTTTTTCTTTAGCAGCATTAGATGATTGCCTTTCTCATTTTTTTATACAG PhaseCut44: +Start +End FragmentLength FragmentNumber 805 931 21 7 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 803 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATAGTGA 824 - 0 0 0 0 0 0 0 0 0 0 0 TGTTAATGAATCTAGACATAT 845 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 866 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATGAATGTGGGAAA 887 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 889 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 CTAGAATGACTTACATTGTGA 910 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G23204 5256 LOC_OS10G23204.1-2 osa-miR1436 791 811 LOC_OS10G23204 5256 LOC_OS10G23204.1-2 osa-miR1436 791 811 PhaseCut45: +Start +End FragmentLength FragmentNumber 805 925 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAGCAT 803 - 12.84 9.96 10.71 2.44 4.96 0 0 0 39.65 11.02 7.01 TTCCCACATTCATAGTGATGTTAA 827 - 0 0 0 0 0 0 0 0 0 0 0 TGAATCTAGACATATATATCTATC 851 - 0 0 0 0 0 0 0 0 0 0 0 AATCTAGACATATATATCTATCTA 853 + 0 0 0 0 0.5 0 0 0 0.73 0 0 GATTCATTAACATCAATATGAATG 877 + 1.78 0.22 0.44 0.61 0 0 0 0 0 0 0 TGGGAAATGCTAGAATGACTTACA 901 + 1.58 0.44 0.87 0 2.73 0 0 0 0 0.49 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G23204 5256 LOC_OS10G23204.1-2 osa-miR1436 791 811 LOC_OS10G23204 5256 LOC_OS10G23204.1-2 osa-miR1436 791 811 >LOC_OS10G27274.1-1 GTAAGTATTTTTTTTATGCTTGATCTGTGACTGATCTCAAACAGATAAATTGAAATGAGTAACTTGTACACAGATAAAAAAGTGACATGGGACTTGATTAGAGTTACGGTATTTTTATCTTACGAGGCGGCAACATTATTTGAGTTTTATGAGTCAAATATTCTTCCATTTTTTCCTGTCATTTGGTTGTGTCAAGTCATTATTTGAGTTTTATTGGGTAAATTGTGTCCTGACTGGCCCTGAGTTGGATGCAGTGCTTAATTGGTGCAAAAACTGGGCTTAAGTTGCAGTCAATTTCCAGTCATGTGTTTGAAACCATTGTTTTCTGATTACTTTAATTAAATAATCCATGATCACAATATAAACCATATGTGCAAATATCCAGTCATGTGTCGTGTGCATGATCAGATGACTGCTATTGGCTATAATGCAGTGATTCTGAAATTGCTATTTGCCGAGGTTTCCTATTTTTGCTGAACTGCTGCAGCAGAATAGTGCCACCAAATGAAAGTGAACACGTAAGCATATTGTTTGGGAGAAGATCACAGTTCGGAATTTCAGATTATAACCAAGATAAAGAATCACTCAACTTTATGATCGACTTGCTATTCATGTTTATTACTCCCTCCTTTCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTATGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTAAAATTTTTTAATAAGACGAACGGTCAAACATTTTTAAAAAAGTCAACGGCGTCAAATATTTTGGGATGGAGGGAGTATAAAATAGTTCCTACTGAACATTGTCGGCTACTTGTTGATTCTTTTTAGGTGGTGTTTGTTCCTCTGCACAAATAGGTCTGCACATGCACATGCGATTTCTCTTACAGTTATTTTGGTGCTTTAAAATGCTTTACGTATTGGTAATATTAGAGCCTAGAGGTCAAAAACTATTTTGTATAGAGAAAATTATCCCACATAGCCATCTGTTGTTTATTCAAGAAATATTATATGTATCTTCAGGGGAACCATATGTGATACACAAATTCAATTTTATGTCCATTGTTAGAGAATCCATTTGCTTGAATCAAAATTAGAGAATCATATATCTGATGGAAAATTGTCTTTTTACCAATATGTTTGCCTTGCAG PhaseCut87: +Start +End FragmentLength FragmentNumber 1761 1833 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 1761 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 1783 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 ATGAAATGTGTAAAACTATATGTA 1809 + 0.2 0 0 0 0.25 0 0 0 0.73 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G27274 3546 LOC_OS10G27274.1-1 osa-miR2123c 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.1-1 osa-miR2123b 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.1-1 osa-miR2123a 1750 1771 >LOC_OS10G27274.2-1 GTAAGTATTTTTTTTATGCTTGATCTGTGACTGATCTCAAACAGATAAATTGAAATGAGTAACTTGTACACAGATAAAAAAGTGACATGGGACTTGATTAGAGTTACGGTATTTTTATCTTACGAGGCGGCAACATTATTTGAGTTTTATGAGTCAAATATTCTTCCATTTTTTCCTGTCATTTGGTTGTGTCAAGTCATTATTTGAGTTTTATTGGGTAAATTGTGTCCTGACTGGCCCTGAGTTGGATGCAGTGCTTAATTGGTGCAAAAACTGGGCTTAAGTTGCAGTCAATTTCCAGTCATGTGTTTGAAACCATTGTTTTCTGATTACTTTAATTAAATAATCCATGATCACAATATAAACCATATGTGCAAATATCCAGTCATGTGTCGTGTGCATGATCAGATGACTGCTATTGGCTATAATGCAGTGATTCTGAAATTGCTATTTGCCGAGGTTTCCTATTTTTGCTGAACTGCTGCAGCAGAATAGTGCCACCAAATGAAAGTGAACACGTAAGCATATTGTTTGGGAGAAGATCACAGTTCGGAATTTCAGATTATAACCAAGATAAAGAATCACTCAACTTTATGATCGACTTGCTATTCATGTTTATTACTCCCTCCTTTCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTATGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTAAAATTTTTTAATAAGACGAACGGTCAAACATTTTTAAAAAAGTCAACGGCGTCAAATATTTTGGGATGGAGGGAGTATAAAATAGTTCCTACTGAACATTGTCGGCTACTTGTTGATTCTTTTTAGGTGGTGTTTGTTCCTCTGCACAAATAGGTCTGCACATGCACATGCGATTTCTCTTACAGTTATTTTGGTGCTTTAAAATGCTTTACGTATTGGTAATATTAGAGCCTAGAGGTCAAAAACTATTTTGTATAGAGAAAATTATCCCACATAGCCATCTGTTGTTTATTCAAGAAATATTATATGTATCTTCAGGGGAACCATATGTGATACACAAATTCAATTTTATGTCCATTGTTAGAGAATCCATTTGCTTGAATCAAAATTAGAGAATCATATATCTGATGGAAAATTGTCTTTTTACCAATATGTTTGCCTTGCAG PhaseCut87: +Start +End FragmentLength FragmentNumber 1761 1833 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 1761 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 1783 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 ATGAAATGTGTAAAACTATATGTA 1809 + 0.2 0 0 0 0.25 0 0 0 0.73 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G27274 3546 LOC_OS10G27274.2-1 osa-miR2123c 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.2-1 osa-miR2123b 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.2-1 osa-miR2123a 1750 1771 >LOC_OS10G27274.3-1 GTAAGTATTTTTTTTATGCTTGATCTGTGACTGATCTCAAACAGATAAATTGAAATGAGTAACTTGTACACAGATAAAAAAGTGACATGGGACTTGATTAGAGTTACGGTATTTTTATCTTACGAGGCGGCAACATTATTTGAGTTTTATGAGTCAAATATTCTTCCATTTTTTCCTGTCATTTGGTTGTGTCAAGTCATTATTTGAGTTTTATTGGGTAAATTGTGTCCTGACTGGCCCTGAGTTGGATGCAGTGCTTAATTGGTGCAAAAACTGGGCTTAAGTTGCAGTCAATTTCCAGTCATGTGTTTGAAACCATTGTTTTCTGATTACTTTAATTAAATAATCCATGATCACAATATAAACCATATGTGCAAATATCCAGTCATGTGTCGTGTGCATGATCAGATGACTGCTATTGGCTATAATGCAGTGATTCTGAAATTGCTATTTGCCGAGGTTTCCTATTTTTGCTGAACTGCTGCAGCAGAATAGTGCCACCAAATGAAAGTGAACACGTAAGCATATTGTTTGGGAGAAGATCACAGTTCGGAATTTCAGATTATAACCAAGATAAAGAATCACTCAACTTTATGATCGACTTGCTATTCATGTTTATTACTCCCTCCTTTCCTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTATGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTAAAATTTTTTAATAAGACGAACGGTCAAACATTTTTAAAAAAGTCAACGGCGTCAAATATTTTGGGATGGAGGGAGTATAAAATAGTTCCTACTGAACATTGTCGGCTACTTGTTGATTCTTTTTAGGTGGTGTTTGTTCCTCTGCACAAATAGGTCTGCACATGCACATGCGATTTCTCTTACAGTTATTTTGGTGCTTTAAAATGCTTTACGTATTGGTAATATTAGAGCCTAGAGGTCAAAAACTATTTTGTATAGAGAAAATTATCCCACATAGCCATCTGTTGTTTATTCAAGAAATATTATATGTATCTTCAGGGGAACCATATGTGATACACAAATTCAATTTTATGTCCATTGTTAGAGAATCCATTTGCTTGAATCAAAATTAGAGAATCATATATCTGATGGAAAATTGTCTTTTTACCAATATGTTTGCCTTGCAG PhaseCut87: +Start +End FragmentLength FragmentNumber 1761 1833 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 1761 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 1783 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 ATGAAATGTGTAAAACTATATGTA 1809 + 0.2 0 0 0 0.25 0 0 0 0.73 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G27274 3546 LOC_OS10G27274.3-1 osa-miR2123c 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.3-1 osa-miR2123b 1750 1771 LOC_OS10G27274 3546 LOC_OS10G27274.3-1 osa-miR2123a 1750 1771 >LOC_OS10G33250.1-4 GTAAGTACTTCATCAGGCTCTTAATAATACTTCCTTCTTCCTTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAGAATTAATAATTATTTAAATTTTTGAATAAGACGAACGGTCAAATATTTTTAAAAAAGTCAATGGCATCAAATATTTTGGGATGGAGGGAGTATGTAAAAGAGTAACTTTACAGTTTTTAAGAAAGCATAGGGGAAGTACCATATTTTATATTGGAGAAATTTTACGGTTTTCAGTATTTCTTTTAAGATAAAGGAGGCTTTATTGATCTTGGATACAATATACTCTAAAACCACTCCTGATATCTGCATAGCTAGGATGCACATGGTCTATAGTTATTGAAAAAGCCAAATAAAAGAAGATGATGTGCATGTCACTCTGCAAAATAAATAACTTGATCATACATGCTGTTTTCACTGTTATAATAATCTGAACTTATGTGATATATTAG PhaseCut72: +Start +End FragmentLength FragmentNumber 3254 3374 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGCCGTTGACTTTTTTAAACATGT 3252 - 9.68 2.66 10.49 3.87 5.71 0 0 0 44.79 10.36 5.14 TTGACCGTTCGTCTTATTCAAAAA 3276 - 0 0 0 0 0.74 0 0 0 0 0 0 CTTTTGTGAAATGTGTAAAACTAT 3300 - 0 0 0 0 0 0 0 0 0 0 0 ATGTATACATAAAAGTATATTTAA 3324 - 0 0 0 0 0 0 0 0 0 0 0 ATAAATCAAATGATAGAAAAAGAA 3350 + 0.59 0 0.66 0.2 0.25 0 0 0 1.47 0 1.17 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123a 3246 3267 PhaseCut82: +Start +End FragmentLength FragmentNumber 3256 3328 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTTAAACATGTTT 3254 - 44.63 28.56 79.54 17.1 22.83 0 0 0 285.99 61.19 92.36 GACCGTTCGTCTTATTCAAAAACT 3278 - 11.85 6.2 14.86 3.26 8.44 0 0 0 34.51 11.68 25.95 TTTGTGAAATGTGTAAAACTATAT 3302 - 0 0 0 0 0 0 0 0 3.67 0.66 1.4 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123a 3246 3267 PhaseCut91: +Start +End FragmentLength FragmentNumber 3257 3329 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 3257 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 3279 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 3303 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 3305 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.1-4 osa-miR2123a 3246 3267 >LOC_OS10G33250.2-4 GTAAGTACTTCATCAGGCTCTTAATAATACTTCCTTCTTCCTTAAATGTTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAGAATTAATAATTATTTAAATTTTTGAATAAGACGAACGGTCAAATATTTTTAAAAAAGTCAATGGCATCAAATATTTTGGGATGGAGGGAGTATGTAAAAGAGTAACTTTACAGTTTTTAAGAAAGCATAGGGGAAGTACCATATTTTATATTGGAGAAATTTTACGGTTTTCAGTATTTCTTTTAAGATAAAGGAGGCTTTATTGATCTTGGATACAATATACTCTAAAACCACTCCTGATATCTGCATAGCTAGGATGCACATGGTCTATAGTTATTGAAAAAGCCAAATAAAAGAAGATGATGTGCATGTCACTCTGCAAAATAAATAACTTGATCATACATGCTGTTTTCACTGTTATAATAATCTGAACTTATGTGATATATTAG PhaseCut72: +Start +End FragmentLength FragmentNumber 3254 3374 24 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGCCGTTGACTTTTTTAAACATGT 3252 - 9.68 2.66 10.49 3.87 5.71 0 0 0 44.79 10.36 5.14 TTGACCGTTCGTCTTATTCAAAAA 3276 - 0 0 0 0 0.74 0 0 0 0 0 0 CTTTTGTGAAATGTGTAAAACTAT 3300 - 0 0 0 0 0 0 0 0 0 0 0 ATGTATACATAAAAGTATATTTAA 3324 - 0 0 0 0 0 0 0 0 0 0 0 ATAAATCAAATGATAGAAAAAGAA 3350 + 0.59 0 0.66 0.2 0.25 0 0 0 1.47 0 1.17 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123a 3246 3267 PhaseCut82: +Start +End FragmentLength FragmentNumber 3256 3328 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTTAAACATGTTT 3254 - 44.63 28.56 79.54 17.1 22.83 0 0 0 285.99 61.19 92.36 GACCGTTCGTCTTATTCAAAAACT 3278 - 11.85 6.2 14.86 3.26 8.44 0 0 0 34.51 11.68 25.95 TTTGTGAAATGTGTAAAACTATAT 3302 - 0 0 0 0 0 0 0 0 3.67 0.66 1.4 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123a 3246 3267 PhaseCut91: +Start +End FragmentLength FragmentNumber 3257 3329 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 3257 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 3279 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 3303 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 3305 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123c 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123b 3246 3267 LOC_OS10G33250 5905 LOC_OS10G33250.2-4 osa-miR2123a 3246 3267 >LOC_OS10G37480.1-17 GTATGGAGGGAACTTACCACACTATGTTTGAGAATGTATAGGACATTATGGTAAAGTGATAAATTATCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATAAATCTAGGTAGATATATATGTCTAGATTCATTAACATCAATATGAATGTTGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATCTGATAGATTTCTAAGTAACACTTTTACTATTTCATTGCCTCAG PhaseCut34: +Start +End FragmentLength FragmentNumber 7927 7975 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 7925 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 7949 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 7951 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 PhaseCut35: +Start +End FragmentLength FragmentNumber 7928 7976 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 7926 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 7950 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 7952 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 PhaseCut42: +Start +End FragmentLength FragmentNumber 7933 7975 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 7931 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 7952 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7954 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.1-17 osa-miR1436 7919 7939 >LOC_OS10G37480.2-13 GTATGGAGGGAACTTACCACACTATGTTTGAGAATGTATAGGACATTATGGTAAAGTGATAAATTATCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATAAATCTAGGTAGATATATATGTCTAGATTCATTAACATCAATATGAATGTTGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATCTGATAGATTTCTAAGTAACACTTTTACTATTTCATTGCCTCAG PhaseCut34: +Start +End FragmentLength FragmentNumber 7927 7975 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCATTC 7925 - 7.31 4.87 7.43 0.61 2.98 0 0 0 5.14 23.19 0.94 TAGCATTTCCCACATTCATATTGA 7949 - 0.99 0 0.87 0.2 0.99 0 0 0 0 7.57 0.47 GCATTTCCCACATTCATATTGATG 7951 + 0 0 0 0 0.25 0 0 0 1.84 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 PhaseCut35: +Start +End FragmentLength FragmentNumber 7928 7976 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 7926 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 7950 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 7952 + 0 0 0 0 0 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 PhaseCut42: +Start +End FragmentLength FragmentNumber 7933 7975 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 7931 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 7952 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 7954 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 LOC_OS10G37480 9661 LOC_OS10G37480.2-13 osa-miR1436 7919 7939 >LOC_OS11G32369.1-8 GTAACTTACAATTTCTGTGTTTAGTTTGTTGGCAAATATTGCACTGATTGTCATAGGTTTCAACTTTCAACATTCATTTTTAAGCCTTTACAAGCAAATAACTTGATTCTCTGAAATGTTGCCTGAAGACCTGATGACCACCAATAGGGGAAGAGTGAAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATATTAATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGAATGTGGAAAATGCTAGAATGACTTACATTGTGAAACAGAGGAAGTATGAAGTAGATTAAGTCTGAGGAGAATCATTGGCACCATTCCAGTATATTCCTTTGAACTGAATGAGAGCATCCTTGAGAATATATCCCTTGTCATGAATACCAACAATTGCCAACTGATGTAGTACTGCTGAGCATGCAGATCCACCCCATAGGGATTGGATATTTCCTGAATCCAAACTGGTTGCATTATAGAGACTGCATGGACCACTAACAAATGACCAACTCTAGATAGGAATCAGGGCTTTCCTGTACTGGAACTTGTTCTGAAAGCCAATATTTAGTCCTTGCTTTGCATTGAAGTTCAGAGTGAAGAACCTGATCTCTTAAGTTATAAAATTTTTTGATGGCCAGTTTTGATAGTGAATACCCTGATTTGAAG PhaseCut50: +Start +End FragmentLength FragmentNumber 5231 5375 24 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 5229 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 5253 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 ATTAATGAATCTAGACATATATAT 5277 - 0 0 0.22 0.2 1.49 0 0 0 0 0 0.7 TAATGAATCTAGACATATATATCT 5279 + 0.2 0 0 0 0.5 0 0 0 0 0.16 0 CTATCTAGATTCATTAACATCAAT 5301 - 0.59 0.22 0.87 0.41 0.99 0 0 0 1.47 0.33 0.47 ATGAATGTGGAAAATGCTAGAATG 5325 - 0 0 0 0 0 0 0 0 0 0 0 GAATGTGGAAAATGCTAGAATGAC 5327 + 3.95 6.64 2.62 1.02 1.24 0 0 0 0.37 13.16 1.87 TTACATTGTGAAACAGAGGAAGTA 5351 + 0 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G32369 8245 LOC_OS11G32369.1-8 osa-miR1436 5222 5242 LOC_OS11G32369 8245 LOC_OS11G32369.1-8 osa-miR1436 5222 5242 PhaseCut66: +Start +End FragmentLength FragmentNumber 5236 5362 21 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 5234 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 5255 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TATTAATGAATCTAGACATAT 5276 - 0 0 0 0.2 0.5 0 0 0 0 0 0 ATATCTATCTAGATTCATTAA 5297 - 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 CATCAATATGAATGTGGAAAA 5318 - 0.59 0 0 0.41 1.49 0 0 13.62 0 0 0 CTAGAATGACTTACATTGTGA 5341 + 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G32369 8245 LOC_OS11G32369.1-8 osa-miR1436 5222 5242 LOC_OS11G32369 8245 LOC_OS11G32369.1-8 osa-miR1436 5222 5242 >LOC_OS11G34300.2-6 GTGTCTCTCACTTTCAAATATGTTTTATTGTGAAGTATTTGATTTCCATGAAGTTCATTTTCCATCAATTATGATACTGCAATTTGCCTTTTGAGATATCATTTCTAAACTACTGATATTAAGCATATTTCTGCTCCTTTGAACTAATAATACTTTTTTATTAATTCTCTTTTTATTTCTAGTACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGTCAATGAATCTAGACATATATATCTGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGAAGTACATGATTTGGCAGTTATGTTCATTTTTCATCATACATGTGGAAAATGGGAACATTCTATGGTCCATATGGACCTTTCTTCTCTTTTTACAATATAAGTATAACACTTAAAGTTCTTGACCTTTTGTTGTATGATGATGACTATTTCATTTTCTCAACATTTCTAAAATTGTAATGATGAATTTTAGGAAATCTTGCTGCTTCGGTGCTTCGTTTAGTTCTTTACACAACAATCCGATTTCTGGACTACATGATGTTTGCTTACCAGCAAAAATAATCTAGCTGTGTAAGAATTGTTAGTATGGATAAATTTAGAACACATGTTAAATTTAAATTGGTAGTTTGGAACTATGAACTAATGTTTTACATTGTGCGAAGAGAATTCGTTACCTACCTATTATGGTTATGGAGACTGACAAACTTAACATTTTGAAGCTTTCAGCTATATTTGGCAAGCATGTGGTAGATCATTTTATCTATCAAGTTGTTTTGTGGTATATTTGTAAACATAATGACAACTCTGCCCTGGTTGATCCAG PhaseCut41: +Start +End FragmentLength FragmentNumber 3454 3559 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 3452 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTCTCACATTCA 3473 - 134.1 105.6 4.59 121.53 49.39 10.29 0 11.05 0 0.33 0.94 TTGATGTCAATGAATCTAGAC 3496 + 0 0 0 0 0 0 0 0 0 0 0 ATATATATCTGTCTAGATTCA 3517 + 0 0 0 0 0 0 0 0 0 0 0 CATTAACATCAATATGAATAT 3536 - 0.59 0 0 0 0.5 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34300 8752 LOC_OS11G34300.2-6 osa-miR1436 3446 3466 LOC_OS11G34300 8752 LOC_OS11G34300.2-6 osa-miR1436 3446 3466 PhaseCut42: +Start +End FragmentLength FragmentNumber 3455 3518 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCAT 3453 - 2.76 1.55 2.84 10.79 0 0 0 0 0 0.16 0 TCTAGCATTTCTCACATTCAT 3474 - 8.29 4.43 0.66 9.36 1.49 0 0 0 0 0 0.23 TGATGTCAATGAATCTAGACA 3497 + 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34300 8752 LOC_OS11G34300.2-6 osa-miR1436 3446 3466 LOC_OS11G34300 8752 LOC_OS11G34300.2-6 osa-miR1436 3446 3466 >LOC_OS11G34300.3-3 GTGTCTCTCACTTTCAAATATGTTTTATTGTGAAGTATTTGATTTCCATGAAGTTCATTTTCCATCAATTATGATACTGCAATTTGCCTTTTGAGATATCATTTCTAAACTACTGATATTAAGCATATTTCTGCTCCTTTGAACTAATAATACTTTTTTATTAATTCTCTTTTTATTTCTAGTACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGTCAATGAATCTAGACATATATATCTGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGAAGTACATGATTTGGCAGTTATGTTCATTTTTCATCATACATGTGGAAAATGGGAACATTCTATGGTCCATATGGACCTTTCTTCTCTTTTTACAATATAAGTATAACACTTAAAGTTCTTGACCTTTTGTTGTATGATGATGACTATTTCATTTTCTCAACATTTCTAAAATTGTAATGATGAATTTTAGGAAATCTTGCTGCTTCGGTGCTTCGTTTAGTTCTTTACACAACAATCCGATTTCTGGACTACATGATGTTTGCTTACCAGCAAAAATAATCTAGCTGTGTAAGAATTGTTAGTATGGATAAATTTAGAACACATGTTAAATTTAAATTGGTAGTTTGGAACTATGAACTAATGTTTTACATTGTGCGAAGAGAATTCGTTACCTACCTATTATGGTTATGGAGACTGACAAACTTAACATTTTGAAGCTTTCAGCTATATTTGGCAAGCATGTGGTAGATCATTTTATCTATCAAGTTGTTTTGTGGTATATTTGTAAACATAATGACAACTCTGCCCTGGTTGATCCAG PhaseCut41: +Start +End FragmentLength FragmentNumber 3454 3559 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 3452 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTCTCACATTCA 3473 - 134.1 105.6 4.59 121.53 49.39 10.29 0 11.05 0 0.33 0.94 TTGATGTCAATGAATCTAGAC 3496 + 0 0 0 0 0 0 0 0 0 0 0 ATATATATCTGTCTAGATTCA 3517 + 0 0 0 0 0 0 0 0 0 0 0 CATTAACATCAATATGAATAT 3536 - 0.59 0 0 0 0.5 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34300 8752 LOC_OS11G34300.3-3 osa-miR1436 3446 3466 LOC_OS11G34300 8752 LOC_OS11G34300.3-3 osa-miR1436 3446 3466 PhaseCut42: +Start +End FragmentLength FragmentNumber 3455 3518 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCAT 3453 - 2.76 1.55 2.84 10.79 0 0 0 0 0 0.16 0 TCTAGCATTTCTCACATTCAT 3474 - 8.29 4.43 0.66 9.36 1.49 0 0 0 0 0 0.23 TGATGTCAATGAATCTAGACA 3497 + 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34300 8752 LOC_OS11G34300.3-3 osa-miR1436 3446 3466 LOC_OS11G34300 8752 LOC_OS11G34300.3-3 osa-miR1436 3446 3466 >LOC_OS11G34305.1-6 GTGTCTCTCACTTTCAAATATGTTTTATTGTGAAGTATTTGATTTCCATGAAGTTCATTTTCCATCAATTATGATACTGCAATTTGCCTTTTGAGATATCATTTCTAAACTACTGATATTAAGCATATTTCTGCTCCTTTGAACTAATAATACTTTTTTATTAATTCTCTTTTTATTTCTAGTACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGTCAATGAATCTAGACATATATATCTGTCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGAAGTACATGATTTGGCAGTTATGTTCATTTTTCATCATACATGTGGAAAATGGGAACATTCTATGGTCCATATGGACCTTTCTTCTCTTTTTACAATATAAGTATAACACTTAAAGTTCTTGACCTTTTGTTGTATGATGATGACTATTTCATTTTCTCAACATTTCTAAAATTGTAATGATGAATTTTAGGAAATCTTGCTGCTTCGGTGCTTCGTTTAGTTCTTTACACAACAATCCGATTTCTGGACTACATGATGTTTGCTTACCAGCAAAAATAATCTAGCTGTGTAAGAATTGTTAGTATGGATAAATTTAGAACACATGTTAAATTTAAATTGGTAGTTTGGAACTATGAACTAATGTTTTACATTGTGCGAAGAGAATTCGTTACCTACCTATTATGGTTATGGAGACTGACAAACTTAACATTTTGAAGCTTTCAGCTATATTTGGCAAGCATGTGGTAGATCATTTTATCTATCAAGTTGTTTTGTGGTATATTTGTAAACATAATGACAACTCTGCCCTGGTTGATCCAG PhaseCut41: +Start +End FragmentLength FragmentNumber 4373 4478 21 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 4371 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTCTCACATTCA 4392 - 134.1 105.6 4.59 121.53 49.39 10.29 0 11.05 0 0.33 0.94 TTGATGTCAATGAATCTAGAC 4415 + 0 0 0 0 0 0 0 0 0 0 0 ATATATATCTGTCTAGATTCA 4436 + 0 0 0 0 0 0 0 0 0 0 0 CATTAACATCAATATGAATAT 4455 - 0.59 0 0 0 0.5 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34305 9746 LOC_OS11G34305.1-6 osa-miR1436 4365 4385 LOC_OS11G34305 9746 LOC_OS11G34305.1-6 osa-miR1436 4365 4385 PhaseCut42: +Start +End FragmentLength FragmentNumber 4374 4437 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCAT 4372 - 2.76 1.55 2.84 10.79 0 0 0 0 0 0.16 0 TCTAGCATTTCTCACATTCAT 4393 - 8.29 4.43 0.66 9.36 1.49 0 0 0 0 0 0.23 TGATGTCAATGAATCTAGACA 4416 + 0.2 0 0 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34305 9746 LOC_OS11G34305.1-6 osa-miR1436 4365 4385 LOC_OS11G34305 9746 LOC_OS11G34305.1-6 osa-miR1436 4365 4385 >LOC_OS11G34460.1-1 GTGAGCCCTCGTGCGCGCCCTGCTCTTAGCTGTTCCCCGATCGATGCCGCTCTGCTCTGATCTGGTGTGGTTGGATGGGGATGGCGAAATGCTGCTTGTTTTTTTTTTTTGGTGCTCTCGATTCGATTCCAGCTCGATATGTTGGCGAGATTGATGGTGGTTGTGGATGGCTGTGTTGTTGAATTTAATGAGCTTTTGCCGTGCAGTCAAACCTTGAGATTTTAATGCGCATTTGTTAGAATTAGGGGGTTCCTGTACAGGCGTACGGTGCAGAGTGCGCACCACTCTGTCTCTGCCTTAATGCTTGCAATTGCGGCGATGATGCGTGATTCCTGACTAGTTGCTGTAAATTTTAGCATTTTATCCTCACTTTTGATTGGTTGTTTTTTTTTTTTTTGAAATTTATAGATGGGTATCATGCCAGTATGAGATTTAGCCAGAATTTGAAGTGTACTGTTTCTGTTAGACCATCTGTATTTTAGAGCCAATCTCTGAGTAATGGTGACATTGTTGATTTTTAATCTACACATTAAGCACAGCACGAGCAAGCCAACAATCGAAGTAAATTGTAGATAATGTTGTTCAAGTACAGTAAAAGCCTGAAAGGTGCTTACGCGATCTAGTTTGGATATATTCATGTTATTGCTAAATTTATGAAATGGCTTTTGAAACAAATTTTGTGTATGGAAGTTCTATATCGCATATTTGCATTGGACCTTAGAGGCGAACAACGAAATGTTCATATATTCTTTCTGGCTCTGGGTCATTTTTGTTTTCTGGTGGGAAGAGGCTGGGCAAGCAAGGGTGATGGCTACCCGTTAGATATTTTCCCCTGATATATCTTCTCTTCTCTTGCTCTACTAAAGTAGCCACTTGCACATAGAAAAAGGGATGATGGAAGAATAAACTGTAGCATATATTGTGAATATAAAATGAGATGGGTAGGCCATTAATTGGAATATAGCACAGTTGTCTGTAGCATGTGGGTACAAAAATTTACAACAGGGAGCATCACGGTTTTAGCCAGGCCTTTTTATTTTTTACCACCGGGCTACCAATTAATACTTAGTAACTTTAGTCTTCCATTGGCATATATCATATTTAGTGGTCGCCTGCTAGTGCTCTAGGAGGATATATTATACTGGATTAGTAAGACTTTTTCCTCCTCTCTTGGATGGTACTGGAAAATAATTAACTATGAATGTATTCACATGACAAATTAACATTGAATTTGGACACCAACTGTGAAATTTGATCCGTATTAACAATATGGAAAGCTATTATTGGTGACAACCTTATAAGTGTACTACAGTACTACACCTGCAAGGGTTTTCAGTTGACAAGTAGCTGATTATGGTCAGTTTCAGAATTCGGAACTCAATTTTGAGCATAAATGGAAGTTCTGGATGTAATATGAAGATAAACTTTGAGAAATTTGACTTGGGTTGTAAATGTTTGAACTTGATTTTCGTGCTGTACTGCTTAAGGCTGTCTTCAGGAGGCAAGGTTTACCTCCTGACACGGAAAACAATGTAAGCGATTAGAGCGAGATTAGTTAAGTACTAGCCTAAAAAAAATTAAAAAATGGATTAATATGATTTTTTTTAAAGCAACTTTCCTATAGGAAAATTTTGCAAAGAACACACCGTTTAGCAGTTTGAAAAGCGTGCGCGCAGAAAACGAGAGATGTGAGTTGGGAAAGAAGGGGAAAGTCTTTTAGGGACTCATTCCGTAAATGTCGTTTTACCATTTTGTGGTGATTTGCTCTAATCGTCCACGTCGAATGGTAAATATTCTTGTGTGCAGTCTGCACAATTAGCCTCTCTTTTGTCAGATTATGAAAATTCTTGAAAAACAATTTATTGAATTGCTTACATGATGCAAGAACTTGTCTCTTATATTACATTTTGACATATCATGCCATCACAAACAATTCCAAACATATTAATTTTATTTCCAAAAGATTCATTGGATGAGTTTAGTTAAACCTGTGTTCCATCATAAGTACTCCCTCCTTCCCTAAATGTTTGACACGGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATTTTTAAAAAAGTCAACGGCGTCAAACATTTTGGGATGGAGGGAGTAGTTTGGACATTCAGCAATCAGCATAAGCTCTAGGCATTGGCTAACATAATTAAGTATTCAATGTAGGGTTTTTTTTTTTTTTTTGCATTTCGACTAAAGTCCAACAAAGCATAAAAAAAATAGCTGGACTAGTTTCTGCCTAATGTTTAGCAATGTTAGCAATTAGCACTAGGTTAACAGAATACATTTGAAACCAAACAAAAAGCCACATTCTTCTTCGTTGTCTGCGACAAAGCTAATAGACAAATGCATGTTCTCTATGCTTGAATTGCTGTTATTCTACTATCATTTTTCATTTATACGAGTTGTTCAACTGTATCATATTTGCATCAAGCTAACAGTGACATAACTTGACAGAGGGCCTAGAGAAGCTTCTCACATTACTCTGTTGACTCAAACTTGTTTCAG PhaseCut36: +Start +End FragmentLength FragmentNumber 2435 2507 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2435 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 2457 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 2481 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 2483 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34460 4851 LOC_OS11G34460.1-1 osa-miR2123c 2424 2445 LOC_OS11G34460 4851 LOC_OS11G34460.1-1 osa-miR2123b 2424 2445 LOC_OS11G34460 4851 LOC_OS11G34460.1-1 osa-miR2123a 2424 2445 >LOC_OS11G34460.3-1 GTGAGCCCTCGTGCGCGCCCTGCTCTTAGCTGTTCCCCGATCGATGCCGCTCTGCTCTGATCTGGTGTGGTTGGATGGGGATGGCGAAATGCTGCTTGTTTTTTTTTTTTGGTGCTCTCGATTCGATTCCAGCTCGATATGTTGGCGAGATTGATGGTGGTTGTGGATGGCTGTGTTGTTGAATTTAATGAGCTTTTGCCGTGCAGTCAAACCTTGAGATTTTAATGCGCATTTGTTAGAATTAGGGGGTTCCTGTACAGGCGTACGGTGCAGAGTGCGCACCACTCTGTCTCTGCCTTAATGCTTGCAATTGCGGCGATGATGCGTGATTCCTGACTAGTTGCTGTAAATTTTAGCATTTTATCCTCACTTTTGATTGGTTGTTTTTTTTTTTTTTGAAATTTATAGATGGGTATCATGCCAGTATGAGATTTAGCCAGAATTTGAAGTGTACTGTTTCTGTTAGACCATCTGTATTTTAGAGCCAATCTCTGAGTAATGGTGACATTGTTGATTTTTAATCTACACATTAAGCACAGCACGAGCAAGCCAACAATCGAAGTAAATTGTAGATAATGTTGTTCAAGTACAGTAAAAGCCTGAAAGGTGCTTACGCGATCTAGTTTGGATATATTCATGTTATTGCTAAATTTATGAAATGGCTTTTGAAACAAATTTTGTGTATGGAAGTTCTATATCGCATATTTGCATTGGACCTTAGAGGCGAACAACGAAATGTTCATATATTCTTTCTGGCTCTGGGTCATTTTTGTTTTCTGGTGGGAAGAGGCTGGGCAAGCAAGGGTGATGGCTACCCGTTAGATATTTTCCCCTGATATATCTTCTCTTCTCTTGCTCTACTAAAGTAGCCACTTGCACATAGAAAAAGGGATGATGGAAGAATAAACTGTAGCATATATTGTGAATATAAAATGAGATGGGTAGGCCATTAATTGGAATATAGCACAGTTGTCTGTAGCATGTGGGTACAAAAATTTACAACAGGGAGCATCACGGTTTTAGCCAGGCCTTTTTATTTTTTACCACCGGGCTACCAATTAATACTTAGTAACTTTAGTCTTCCATTGGCATATATCATATTTAGTGGTCGCCTGCTAGTGCTCTAGGAGGATATATTATACTGGATTAGTAAGACTTTTTCCTCCTCTCTTGGATGGTACTGGAAAATAATTAACTATGAATGTATTCACATGACAAATTAACATTGAATTTGGACACCAACTGTGAAATTTGATCCGTATTAACAATATGGAAAGCTATTATTGGTGACAACCTTATAAGTGTACTACAGTACTACACCTGCAAGGGTTTTCAGTTGACAAGTAGCTGATTATGGTCAGTTTCAGAATTCGGAACTCAATTTTGAGCATAAATGGAAGTTCTGGATGTAATATGAAGATAAACTTTGAGAAATTTGACTTGGGTTGTAAATGTTTGAACTTGATTTTCGTGCTGTACTGCTTAAGGCTGTCTTCAGGAGGCAAGGTTTACCTCCTGACACGGAAAACAATGTAAGCGATTAGAGCGAGATTAGTTAAGTACTAGCCTAAAAAAAATTAAAAAATGGATTAATATGATTTTTTTTAAAGCAACTTTCCTATAGGAAAATTTTGCAAAGAACACACCGTTTAGCAGTTTGAAAAGCGTGCGCGCAGAAAACGAGAGATGTGAGTTGGGAAAGAAGGGGAAAGTCTTTTAGGGACTCATTCCGTAAATGTCGTTTTACCATTTTGTGGTGATTTGCTCTAATCGTCCACGTCGAATGGTAAATATTCTTGTGTGCAGTCTGCACAATTAGCCTCTCTTTTGTCAGATTATGAAAATTCTTGAAAAACAATTTATTGAATTGCTTACATGATGCAAGAACTTGTCTCTTATATTACATTTTGACATATCATGCCATCACAAACAATTCCAAACATATTAATTTTATTTCCAAAAGATTCATTGGATGAGTTTAGTTAAACCTGTGTTCCATCATAAGTACTCCCTCCTTCCCTAAATGTTTGACACGGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATTTTTAAAAAAGTCAACGGCGTCAAACATTTTGGGATGGAGGGAGTAGTTTGGACATTCAGCAATCAGCATAAGCTCTAGGCATTGGCTAACATAATTAAGTATTCAATGTAGGGTTTTTTTTTTTTTTTTGCATTTCGACTAAAGTCCAACAAAGCATAAAAAAAATAGCTGGACTAGTTTCTGCCTAATGTTTAGCAATGTTAGCAATTAGCACTAGGTTAACAGAATACATTTGAAACCAAACAAAAAGCCACATTCTTCTTCGTTGTCTGCGACAAAGCTAATAGACAAATGCATGTTCTCTATGCTTGAATTGCTGTTATTCTACTATCATTTTTCATTTATACGAGTTGTTCAACTGTATCATATTTGCATCAAGCTAACAGTGACATAACTTGACAG PhaseCut36: +Start +End FragmentLength FragmentNumber 2435 2507 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 2435 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAACTT 2457 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 TTGTGAAATGTGTAAAACTATATG 2481 - 0 0 0 0 0 0 0 0 0 0.33 0 GTGAAATGTGTAAAACTATATGTA 2483 + 0 0 0 0 0.25 0 0 0 0 0.16 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G34460 4851 LOC_OS11G34460.3-1 osa-miR2123c 2424 2445 LOC_OS11G34460 4851 LOC_OS11G34460.3-1 osa-miR2123b 2424 2445 LOC_OS11G34460 4851 LOC_OS11G34460.3-1 osa-miR2123a 2424 2445 >LOC_OS11G36780.1-1 GTATATATTTTTTAATTCTTTTAGTTAATTGTAATGCTGCATAAACGTCATGTTCAGCAAAAATCACCTTCAGTGCCACTTGAGGCTCCCAACCTCACTCCCTAATTTATCGCGTGCACGCTTTCCAAATACTAAATGGTGTAGTTTTTTTTTAAAAAAAATTCTATAGAAAAGTTGCTGTAGAAAATTATATTAATCTATTTTTTCAAGTTTTCTTTTGGCTAATACTTAATTAATCATGTTTTAAATCATCGCACTGTGTTTCCATGTGGAGAGGAAGGGTTCCTAACCCCTCCAAAAGATCACAGCCTAAAGGAGTAATTTTGCATCGGTTTTCATAGTTGAGGGGTTAAAATATCTAGTATTGCTAAGAGCGAGTATAATAAGATGATGTAAGTAGGCTATACAGGCTGCCACATCATATTTATGCTTATGTGGATAAGAGAGAAGATTAGAGAGAAAAGAAGCGGAGTACATAATAGATTATTAGTAGCCGGCTGCAGCATGGGTTTCAACATACTATGTGAGATAGGTAGATTTAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCATATTCATATTGATATTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATTAGTATGAATGTGGAAAATGCTAGAATAACTTACATTGTGAAACGGAGGGGGTATTAATTATGCATTATATATCTATAACTAACTATTATAACTATTATATGAGCAGGCTATTAGGTTGGTTATTGATGATGTTTTAATTTTTAAGAACTAGTGGTTGGTTATATTATTAAACTTATATTTAAGGGGTTGGAATCAGATTGAACAGAAAGTCAAATGCACTTATTCCGTAGAAAAAAAAGAGGGCGCAATGGGGAATTTCTTATTTTTACATCTTTTTATTAAAATATTTTTTAAAAAATTTGTTTTGAAAATTTACAATTCTAGTGGCCTCTCGCTCTTTGGGAGGGCGTTTTTTAAAAATCGCCCTTCCTGATAAGGGACCTAAATATAAATTTTTTATTTGTGTTCAAACCCTTTCCACCGGTGTTAATCGTTTAAAAACTAATAATGCTTATTCGACACTCCAAATAATTTTAAATGGAAAAGTGATAAACAACAAAGTTGTAGATCTCATCAAGATGTACAATTTTTATATAAAATTTATCTCCATCCGATGTCGTTTGAAATGTATATCTGAGATTTTTAAAATAGTTTTATATTGTGTAACGAATATATGGATATCTAAAAGATCTTAAATGAAAACATTGTTAACTACAAAGTTGTAGATCTCCTCGATCTCTACAATTTTGATATAAAGTTTTATTTCATATGACTTTATATAATATAATTTTAAATTGTAAAATTATAG PhaseCut41: +Start +End FragmentLength FragmentNumber 679 742 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 677 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCATATTCA 698 - 1.78 0 0.22 1.02 1.24 0 0 0 0 0 0 TTGATATTAATGAATCTAGAT 721 + 0 0 0 0.2 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G36780 1607 LOC_OS11G36780.1-1 osa-miR1436 671 691 PhaseCut45: +Start +End FragmentLength FragmentNumber 680 752 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 678 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCATATTCATATTGAT 702 - 1.38 0 1.97 0.2 1.49 0 0 0 5.51 2.47 1.87 ATTAATGAATCTAGATAAATATAT 726 - 0.2 0 0 0 0.5 0 0 0 0 0 2.34 TAATGAATCTAGATAAATATATAT 728 + 0 0.22 0 0 0.5 0 0 0 0 0.99 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G36780 1607 LOC_OS11G36780.1-1 osa-miR1436 671 691 PhaseCut47: +Start +End FragmentLength FragmentNumber 681 723 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTTCACAATGTAAGTCATT 679 - 3.36 1.77 0 3.26 1.24 0 0 0 0.37 0 0.23 CTAGCATTTTCCATATTCATA 700 - 3.16 0.44 0.22 2.04 0.99 0 0 0 0 0 0.23 AGCATTTTCCATATTCATATT 702 + 0 0 0 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G36780 1607 LOC_OS11G36780.1-1 osa-miR1436 671 691 >LOC_OS11G47269.1-1 GTACACACATATATATACATCTTCAATTTCTCCATCACCATGCTGAATATAACAGCTTAATTAATTTTCTTCGTTTTGCAATGGCCAATGGATGAATCAAAATCAAGCATCTGATCATGGGTCTAACCATTCTGTACACAGGTGCATACGAAATACTCCCTCTGTTTCGAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATATTTTTATGTAGGTATATAATTTTACATATTTCACAAAAGTTTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAG PhaseCut75: +Start +End FragmentLength FragmentNumber 282 378 24 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTTAAACATGTTTGAC 282 + 1.38 0.22 1.97 0.2 37.23 0 0 0 0 13.82 0 ACCGTTCGTCTTATTCAAAAAATT 304 - 2.96 1.33 4.81 0.2 3.72 0 0 0 11.75 4.44 28.29 TAAGTAATTATTAATTCTTTTCCT 328 - 0 0 0.22 0 0.25 0 0 0 0 0 0 ATCATTTGATTCATTGTTAAATAT 352 - 3.95 1.55 5.9 1.02 5.71 0 0 0 5.51 0.16 5.85 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS11G47269 639 LOC_OS11G47269.1-1 osa-miR2123c 271 292 LOC_OS11G47269 639 LOC_OS11G47269.1-1 osa-miR2123b 271 292 LOC_OS11G47269 639 LOC_OS11G47269.1-1 osa-miR2123a 271 292 >LOC_OS12G07060.1-11 GTGCATTTCTGCTTTAATTACATATTTTTATTTATTTGTTTCTTGAAGATTCTATAGTTCTTCATGATAAATAAAGTCCCATCTGTCATGGCTGTCTTTGTTCAACAATTTCACTCAGTGGCGGACCCAGCACAAAATTATAGCTATGGCGAACTTTCTAAATGTACTTAGTACCGAAACATTTTTTTTATAAAAAAACACAAACATACCAAAACATTAGTATATAATGTATATGATAAAAATAATTAGTGTGCATATCCAATAAAACTATAAGTAAATAATTTACTGTTTTCAATATAGGTGAAGATTTATTCATGAAGGTGAGAGCCCCTAGAGCCATCCAAATGTTCCCATTCCAAATTATTCTCCAAATATTTGTGGTTAGCGTTAAACAAATAGTAATTATACTTTTGCTCAATTCCTTAAAGAACAATTCCAACCGATGCAGATGCATCATCACTTGGTCAACATGACAACTTGCTCCACCATACCAGTATTAGCTTGTACTAGTACTAATACTAAAAGATTAGTGCTTATTGCCCCCATCATCACGGTAACCACCAATGAAACAGTCAGTAGTGTTGTTGTTTAGTTGATAGTTACTGCTGGCAGATAGGTATGGCAGCTGCCACACCTTGCCACAAGGGAAGGTCCGCCACTGATTTCACTGAAAAATGGTAAACATCACTTCTATGAGTGTATTTTGTTCGTTACAAAAAGATCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAACGGAGGAAGTAGCTGGCATTTAAAGGAATGCCTTTGATACTATAAATAATTTGGGATGGTAATTCTATCCTAAAACTTAATGCGATTGCCAAGAGGTATGAAATATGAATTGTGATACAAATTAGTCATGTGATCCTAAAACTTTATATTCAATGAGTTTATCTCTCTTATGTTGATGTTTGATTCTAGGAGCCTGACTTGTTTTGTATTCTATAATTTGCTTGAAG PhaseCut83: +Start +End FragmentLength FragmentNumber 5241 5367 21 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 5239 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 5260 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 5262 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TTAATGAATCTAGATAGATAT 5283 + 2.76 0 1.53 0.81 9.18 2.11 0 0 0 0 0 ATATGTCTAGATTCATTAACA 5304 + 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 CATCAATATGAATGTGGGAAA 5323 - 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TCAATATGAATGTGGGAAATG 5325 + 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TGCTAGAATGACTTAAATTGT 5344 - 0 0 0 0.2 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G07060 7570 LOC_OS12G07060.1-11 osa-miR1436 5227 5247 LOC_OS12G07060 7570 LOC_OS12G07060.1-11 osa-miR1436 5227 5247 >LOC_OS12G10510.1-1 GTGAGTGGCCAAGTAAACCCCCCCCCCCTTCCCCTCCCCGATGCGGAACATAGGATTGTGATAATCTGTGAAACATGTCTGAATTTTGCATTGCAACTGAAATCCACAATAGTCTATTGTCACTATGCTGTTTCACAATATTATGGAACAAATGGAGCTTCTCGATACGCTTACATTACAAATATAGATCTGTTGAACACACTTTAATTAAGACGGAAGGTCCACAACAACAAAATACAGTTCGGTTCGTATGGGCTTAGTATAACATGTACTCTTTGAATGATAAGCATGCCTTGTAGATATACCCGGAGTTGAATTGACCAAGGTCCTTTGACGGCTAGATTGAGAAGAAGCGATTTCCGTAGGTCATTGGTTGTGTTGGTTGTTGACTATGGAGATCCAACAAAGACATGTATAGCTTTTGCTGTTCTTTCACCTGATCAACGACCATTGAGCATGAACAAATTATTAGCAAACTTATATTGCACTGAATCTTGTACTAAATCTATGTTATTGCACTAAATCTTGTATTTGCACTGACACTTCGCAAATTTCTGCTGATGAACATTGTATTGCAGTCTTATATAGAACTCCATCAACAATTATATTGTTGTTGATACAAAGTTATTCATAATTCATGAAGAACTGTGCAGCAGTTATATACGTGAAAAAAAGATAATATCAAGCTTTTTTGCTTTTCATTGCAAAACAACTGCAGCTAATTCTAGTAAAGAGCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCCATCTAGATTCATTAACATTAATATGAATATAGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACTTCTGTTAAATTGTGAGTGCCCGTAAATTTACAGAAATGCCCTGTTGATAATTAATCTTCAGGTCTAATTTCAGATTTGGTTATCTCCTAATTCTAGTTATAGGGCTACATTTTTTAAATTGAGGAAACATTATCATGTCTATTTTCAAATTATGAAGCGTAGTTGCATGTGTTTTCATCTTTCCAAATTATGAAGTGTAAATTGTCTATGCTATATGTTAGGTTCTGTCGCACATCAAATAGAGTGTAATTTGGATGCTATCCCCAAATGGAGAGTTTGTTTGGCTAGTTGCTTTCTTGATAAGCTGAGGATAATTTCTATTGGGCTGAAGCCTAAATATAGTGATCAAATTATGGGCACCAAGAAATTGACATATTTCAAGCAAATGTTATAAAGTTTCTGTCTAGTGTTACCTTCTCTTGAAGCATTTCATTTGCTTCTTTTAGTATGCCTTCCTGCACATAAAAAAAAAATTCTCTAGCATTACACATTCAGGATTTTAATAATGAGTTAATTGAACTTGTGATTCCTCAACTATGAACCACTTAACATTTGTCTGTCCACTATGAAACTGACTAACTTATTAATGCTTTGGGCCTTTGGCTCATCGCCTCCCTACACCCTAACACTATAATTTTCTTTCCAATATGAAAAACTTCAGCATATTATTACGTTTGGTATGGCCTTTGACGCCTGAACACCTTGATCTGTGATGTCAAATGGGTGCACTGTGCCCAAACAAAAAATATCCAAGATGTGAAGTTTTTGGGACTGATTTCGCCAATTTTAAAGTTGGTGGACAGAATTGAGCAACTAGAATAGTATGATGGGAAAAAAGGACTAATTACCTTTTAATGGTTTATTTCAAACCTCTAACTTGCAGTTTTCTCTTGTTTTTTAAATAGCCTGAAAACCAAATGTAACTACCTTCTGTTCTTATGTTTTGGCATAACTTATACTCCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCTCACATACATATAGATGTTAATGTATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGAGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTACCTTTTTTGATGATTCATCTTGTAAACAGAGAATGTGTATGCTTAGATGAACAGAAACTTTACAGAACAAGCAATAAGACATCAGACATTGAGACTAACCTTGTTTCTAAGAAATTGAATCTCTTGTTGCATCATCTGCATCTGTTAGAAGATATTTCATATTGGTGTTCTGAATACTCTTTAAAGATCTGAAAGAATTAGAGGAAATAAATGGAGAATAGCTGTCTTACCTTTGTTGTGCGTATTTGGTAAATCCATAGTTCAAGACCTTTCTCTAGTGCATGCAATTTATCTAGTGTCATTTCCCCTGCTCCCCCTCCATATGTAGACCTGCTTTTTTTTTCATTTATGAGTCCAAAGTTTTTCTGAGGTAGTTGTCCATATTGAATAAAAGTTATGTTTCATGCTGGTTTTTTGTGCTGACCATAAGGCTTATCATGATTAGACTGAATTGATACTGTCTATATCACTCAAATCACTTCAATCCCAGTTTTCTTGATTGGGAATGGAATTAAAGCTATTAGGCAGTTCAGATGTTAATCTTTTTCTACTATTGGCTTCCTCTTGTTACTTATGTATTGAAATAGTGTCTGTTAAATTTTTTTTAATCTTCGTTGAGTGATCATACTCTGCCTGATTCTGTTGGAAACCAGTTGTTTGCATGGAAATCCCACAATCTTCTAATCCTTCTGTAGAGGGGAATTGATCATGTGCCACTTCTTTAGAGTGGTAACTGGTCATTTTTCCGTTTTATAAATAGATCGGTTTTCAGTATTTTCTTCTTCTGAGCTCTTGATTATCACGAAAATTTGACGATGATTATTAGTCGAACTTTAAACTTGTACAGTGAAAATGGCATTTCTCATATGTTAAACTTAGTCTGTTCCTCACTAATTTAGGGTAGTTTACAAGATAATCATGTGCTGAAAATGTTAGCAATCCATTTTATGGTCGAATTACACAGGCCACGTGACTCAACAGGTCCTAATGTCTCATTAGGCCACTCTTACTGTTTATCAGTGCAGAATATGTAATTAGTATCCTGTCGAGCATGAAAGTTACCTAAGACCCCTCTGTAGTAGATCTATTTCTTCCCTTAACAAGAAAATCCCTTGTTCTGCTACCTGCTATATGATGCAAAAGAGTGTGTTAGTAAATCTTTGGTATCATTTGTCAATTTAAGTATATTCATTTATCTTATGAATTGGAACAGGCAATGCTGTGTATTTTTAATGAACAGAACATTTTAATTTTTTCTTAATTATGTGTTCTCAACTTTTCATACGCTTTCAGTTTCACCTAACATAAATGGTAAGATTATTTTTTTGAATCTTTCAAGGTAAATAGGCAGACCTGTCTTTGTAGAGCTCCTGGTTCCATTTGACCACCTGCTACATTGCTCTGGTACCTTTCAACCAAGTTATGCATATTTCTTGCATTTTGTGAACAAAAGGAAAGCATTTCAGAATTGTATTCACAAATTACAAATTCTATATAAAACATGAATTTGGAAACACACCCATTAGTAGCTAATTCATGGAGTTTTCCCTGAGAGGAGAATATGATAACACCTACATCAGCATCACAAAGCACTGATAGTTCCCTGGCCTTCTTGAGGAGCCCCCCACGGCGCTTACAGAAGGTTACCTGTCTGTGGACAGGGTTCTCTATTCGTCGCATTTGCACCTTTCCTCTGACCATGTTGTTTCACTCTTCCTGCAG PhaseCut58: +Start +End FragmentLength FragmentNumber 1229 1292 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 1227 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCACATTCA 1248 - 1.18 0.89 0.66 1.63 0 0 0 9.25 0 0 0 TTGATGTTAATGAATCTAGAC 1271 + 1.97 0 0 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G10510 5257 LOC_OS12G10510.1-1 osa-miR1436 1221 1241 PhaseCut61: +Start +End FragmentLength FragmentNumber 1230 1350 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1228 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCACATTCATATTGAT 1252 - 8.1 5.31 8.09 1.83 7.45 0 0 0 40.75 1.97 5.85 GTTAATGAATCTAGACATATATAT 1276 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCC 1278 + 0 0 0 0 0 0 0 0 0 0 0 ATCTAGATTCATTAACATTAATAT 1302 + 0 0 0 0 1.24 0 0 0 0.37 1.97 0.23 GAATATAGGAAATGCTAGAATGAC 1326 + 7.5 1.77 4.59 1.22 2.23 0 0 0 0 5.92 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G10510 5257 LOC_OS12G10510.1-1 osa-miR1436 1221 1241 >LOC_OS12G10510.2-1 GTGAGTGGCCAAGTAAACCCCCCCCCCCTTCCCCTCCCCGATGCGGAACATAGGATTGTGATAATCTGTGAAACATGTCTGAATTTTGCATTGCAACTGAAATCCACAATAGTCTATTGTCACTATGCTGTTTCACAATATTATGGAACAAATGGAGCTTCTCGATACGCTTACATTACAAATATAGATCTGTTGAACACACTTTAATTAAGACGGAAGGTCCACAACAACAAAATACAGTTCGGTTCGTATGGGCTTAGTATAACATGTACTCTTTGAATGATAAGCATGCCTTGTAGATATACCCGGAGTTGAATTGACCAAGGTCCTTTGACGGCTAGATTGAGAAGAAGCGATTTCCGTAGGTCATTGGTTGTGTTGGTTGTTGACTATGGAGATCCAACAAAGACATGTATAGCTTTTGCTGTTCTTTCACCTGATCAACGACCATTGAGCATGAACAAATTATTAGCAAACTTATATTGCACTGAATCTTGTACTAAATCTATGTTATTGCACTAAATCTTGTATTTGCACTGACACTTCGCAAATTTCTGCTGATGAACATTGTATTGCAGTCTTATATAGAACTCCATCAACAATTATATTGTTGTTGATACAAAGTTATTCATAATTCATGAAGAACTGTGCAGCAGTTATATACGTGAAAAAAAGATAATATCAAGCTTTTTTGCTTTTCATTGCAAAACAACTGCAGCTAATTCTAGTAAAGAGCTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATCCATCTAGATTCATTAACATTAATATGAATATAGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACTTCTGTTAAATTGTGAGTGCCCGTAAATTTACAGAAATGCCCTGTTGATAATTAATCTTCAGGTCTAATTTCAGATTTGGTTATCTCCTAATTCTAGTTATAGGGCTACATTTTTTAAATTGAGGAAACATTATCATGTCTATTTTCAAATTATGAAGCGTAGTTGCATGTGTTTTCATCTTTCCAAATTATGAAGTGTAAATTGTCTATGCTATATGTTAGGTTCTGTCGCACATCAAATAGAGTGTAATTTGGATGCTATCCCCAAATGGAGAGTTTGTTTGGCTAGTTGCTTTCTTGATAAGCTGAGGATAATTTCTATTGGGCTGAAGCCTAAATATAGTGATCAAATTATGGGCACCAAGAAATTGACATATTTCAAGCAAATGTTATAAAGTTTCTGTCTAGTGTTACCTTCTCTTGAAGCATTTCATTTGCTTCTTTTAGTATGCCTTCCTGCACATAAAAAAAAAATTCTCTAGCATTACACATTCAGGATTTTAATAATGAGTTAATTGAACTTGTGATTCCTCAACTATGAACCACTTAACATTTGTCTGTCCACTATGAAACTGACTAACTTATTAATGCTTTGGGCCTTTGGCTCATCGCCTCCCTACACCCTAACACTATAATTTTCTTTCCAATATGAAAAACTTCAGCATATTATTACGTTTGGTATGGCCTTTGACGCCTGAACACCTTGATCTGTGATGTCAAATGGGTGCACTGTGCCCAAACAAAAAATATCCAAGATGTGAAGTTTTTGGGACTGATTTCGCCAATTTTAAAGTTGGTGGACAGAATTGAGCAACTAGAATAGTATGATGGGAAAAAAGGACTAATTACCTTTTAATGGTTTATTTCAAACCTCTAACTTGCAGTTTTCTCTTGTTTTTTAAATAGCCTGAAAACCAAATGTAACTACCTTCTGTTCTTATGTTTTGGCATAACTTATACTCCCTCCGTTTCACAATGTAAGACTTTCTAGCATTGCTCACATACATATAGATGTTAATGTATCTAAACACATACATATGTCTAGATTCATTAACATCTAAATGAATGTGAGCAATGCTAGAAAGTCTTACATTGTGAAACGGAGGAAGTACCTTTTTTGATGATTCATCTTGTAAACAGAGAATGTGTATGCTTAGATGAACAGAAACTTTACAGAACAAGCAATAAGACATCAGACATTGAGACTAACCTTGTTTCTAAGAAATTGAATCTCTTGTTGCATCATCTGCATCTGTTAGAAGATATTTCATATTGGTGTTCTGAATACTCTTTAAAGATCTGAAAGAATTAGAGGAAATAAATGGAGAATAGCTGTCTTACCTTTGTTGTGCGTATTTGGTAAATCCATAGTTCAAGACCTTTCTCTAGTGCATGCAATTTATCTAGTGTCATTTCCCCTGCTCCCCCTCCATATGTAGACCTGCTTTTTTTTTCATTTATGAGTCCAAAGTTTTTCTGAGGTAGTTGTCCATATTGAATAAAAGTTATGTTTCATGCTGGTTTTTTGTGCTGACCATAAGGCTTATCATGATTAGACTGAATTGATACTGTCTATATCACTCAAATCACTTCAATCCCAGTTTTCTTGATTGGGAATGGAATTAAAGCTATTAGGCAGTTCAGATGTTAATCTTTTTCTACTATTGGCTTCCTCTTGTTACTTATGTATTGAAATAGTGTCTGTTAAATTTTTTTTAATCTTCGTTGAGTGATCATACTCTGCCTGATTCTGTTGGAAACCAGTTGTTTGCATGGAAATCCCACAATCTTCTAATCCTTCTGTAGAGGGGAATTGATCATGTGCCACTTCTTTAGAGTGGTAACTGGTCATTTTTCCGTTTTATAAATAGATCGGTTTTCAGTATTTTCTTCTTCTGAGCTCTTGATTATCACGAAAATTTGACGATGATTATTAGTCGAACTTTAAACTTGTACAGTGAAAATGGCATTTCTCATATGTTAAACTTAGTCTGTTCCTCACTAATTTAGGGTAGTTTACAAGATAATCATGTGCTGAAAATGTTAGCAATCCATTTTATGGTCGAATTACACAGGCCACGTGACTCAACAGGTCCTAATGTCTCATTAGGCCACTCTTACTGTTTATCAGTGCAGAATATGTAATTAGTATCCTGTCGAGCATGAAAGTTACCTAAGACCCCTCTGTAGTAGATCTATTTCTTCCCTTAACAAGAAAATCCCTTGTTCTGCTACCTGCTATATGATGCAAAAGAGTGTGTTAGTAAATCTTTGGTATCATTTGTCAATTTAAGTATATTCATTTATCTTATGAATTGGAACAGGCAATGCTGTGTATTTTTAATGAACAGAACATTTTAATTTTTTCTTAATTATGTGTTCTCAACTTTTCATACGCTTTCAGTTTCACCTAACATAAATGGTAAGATTATTTTTTTGAATCTTTCAAGGTAAATAGGCAGACCTGTCTTTGTAGAGCTCCTGGTTCCATTTGACCACCTGCTACATTGCTCTGGTACCTTTCAACCAAGTTATGCATATTTCTTGCATTTTGTGAACAAAAGGAAAGCATTTCAGAATTGTATTCACAAATTACAAATTCTATATAAAACATGAATTTGGAAACACACCCATTAGTAGCTAATTCATGGAGTTTTCCCTGAGAGGAGAATATGATAACACCTACATCAGCATCACAAAGCACTGATAGTTCCCTGGCCTTCTTGAGGAGCCCCCCACGGCGCTTACAGAAGGTTACCTGTCTGTGGACAGGGTTCTCTATTCGTCGCATTTGCACCTTTCCTCTGACCATGTTGTTTCACTCTTCCTGCAG PhaseCut58: +Start +End FragmentLength FragmentNumber 1229 1292 21 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCCGTTTCACAATGTAAGTCA 1227 - 7.11 3.54 2.62 7.53 1.49 0 0 11.05 0 0 0 TTCTAGCATTTTCCACATTCA 1248 - 1.18 0.89 0.66 1.63 0 0 0 9.25 0 0 0 TTGATGTTAATGAATCTAGAC 1271 + 1.97 0 0 0.81 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G10510 5257 LOC_OS12G10510.2-1 osa-miR1436 1221 1241 PhaseCut61: +Start +End FragmentLength FragmentNumber 1230 1350 24 6 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1228 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTTCCACATTCATATTGAT 1252 - 8.1 5.31 8.09 1.83 7.45 0 0 0 40.75 1.97 5.85 GTTAATGAATCTAGACATATATAT 1276 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATCC 1278 + 0 0 0 0 0 0 0 0 0 0 0 ATCTAGATTCATTAACATTAATAT 1302 + 0 0 0 0 1.24 0 0 0 0.37 1.97 0.23 GAATATAGGAAATGCTAGAATGAC 1326 + 7.5 1.77 4.59 1.22 2.23 0 0 0 0 5.92 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G10510 5257 LOC_OS12G10510.2-1 osa-miR1436 1221 1241 >LOC_OS12G12740.1-4 GTCAGTATTAAGAGTGTTTCCCAGCATGTCTATAATATTGCTATTCACTGTGCTGGACATTGTTTGATCACTTGGGTTAACTCTCGTAATTCCATATGGACATCCATTCCACTTATTTCAACATGGTTTAACTTTATCAGATATGAAAACAAATGGTTTGTAATTTATTACTCCCTCCGTTTCGTTTTATTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATGCATAAAAGTATATTTAACAATCAATCAAATGATAGGAAAATAATTAATAATTATTTAAATTTTTTGAATAAGACGAGCGGTCAAACATGTGATAAAAAGTCAACGGTGTCAAATAAAACGAAACGGAGGGAGTATGTTACAGTGCATTACCCATTTGTTGCAATTGTAATCGTGATTTTCTTTCGTTGATGTTCTGAACAG PhaseCut84: +Start +End FragmentLength FragmentNumber 1459 1531 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTTT 1457 - 148.91 104.49 165.42 58.83 28.79 0 0 0 276.45 176 190.56 GACCGTTCGTCTTATTCAAAAACT 1481 - 11.85 6.2 14.86 3.26 8.44 0 0 0 34.51 11.68 25.95 TGTGAAATATGTAAAACTATATGT 1507 + 0 0 0.22 0 0.25 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G12740 5346 LOC_OS12G12740.1-4 osa-miR2123c 1449 1470 LOC_OS12G12740 5346 LOC_OS12G12740.1-4 osa-miR2123b 1449 1470 LOC_OS12G12740 5346 LOC_OS12G12740.1-4 osa-miR2123a 1449 1470 >LOC_OS12G29980.1-2 GTAAGCTATTGTGCCATTAGTTTTGGTTTGTCCCAATGTGATACCTATTTTTAAAATCCTGGATAAAGCAATGATACATTGGGATTCTGTTATGGTTAGTATTTTGGTTTTGTCTTTTGAGGGAAAGGTGTGGGTTTGTTAACTATGATTAGCTTATTGGGGATTGCTATTAGTTTATTCAGGGATCCTTTTTGTATCCTGCAAAGGCTTTGGAGTTTGGATCTTAAAAACGACACTCACATTATTAGAGATTTAAATATTTAGTAGAGAACATGTGACACTTGAGCATACTTTGCTAAACACTGATGGATTAGTGTTAGAGATATACTCCCTCCGTTTCGAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAGATATGTAAAATTATATGCCTACATAAAAATATATTTAACAATGAATCAAATGATAAGAAAATAATTAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACATGTTTAAAAAAGTTAACAGCGTCAAACATTTCGAAACGGAGGGAGTATATCTTTATAGGTCTGCACATCCAAATATTAAATCATGGTTCTTTCATTTTACAG PhaseCut111: +Start +End FragmentLength FragmentNumber 1660 1775 23 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 1658 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TGACCGTTCGTCTTATTCAAAAA 1681 - 0.59 0.22 0.44 0 0.25 0 0 0 0 0 0 TTTGTGAGATATGTAAAATTATA 1706 + 0 0 0 0 0.25 0 0 0 0 0 0 TATGCCTACATAAAAATATATTT 1727 - 0 0 0 0 0 0 0 0 0 0 0 AACAATGAATCAAATGATAAGAA 1750 - 0 0 0 0 0 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G29980 3928 LOC_OS12G29980.1-2 osa-miR2123c 1650 1671 LOC_OS12G29980 3928 LOC_OS12G29980.1-2 osa-miR2123b 1650 1671 LOC_OS12G29980 3928 LOC_OS12G29980.1-2 osa-miR2123a 1650 1671 >LOC_OS12G29980.2-2 GTAAGCTATTGTGCCATTAGTTTTGGTTTGTCCCAATGTGATACCTATTTTTAAAATCCTGGATAAAGCAATGATACATTGGGATTCTGTTATGGTTAGTATTTTGGTTTTGTCTTTTGAGGGAAAGGTGTGGGTTTGTTAACTATGATTAGCTTATTGGGGATTGCTATTAGTTTATTCAGGGATCCTTTTTGTATCCTGCAAAGGCTTTGGAGTTTGGATCTTAAAAACGACACTCACATTATTAGAGATTTAAATATTTAGTAGAGAACATGTGACACTTGAGCATACTTTGCTAAACACTGATGGATTAGTGTTAGAGATATACTCCCTCCGTTTCGAAATGTTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAGATATGTAAAATTATATGCCTACATAAAAATATATTTAACAATGAATCAAATGATAAGAAAATAATTAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACATGTTTAAAAAAGTTAACAGCGTCAAACATTTCGAAACGGAGGGAGTATATCTTTATAGGTCTGCACATCCAAATATTAAATCATGGTTCTTTCATTTTACAG PhaseCut111: +Start +End FragmentLength FragmentNumber 1660 1775 23 5 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTGACTTTTTAGCACATGTT 1658 - 5.92 1.55 5.03 2.85 1.99 0 0 0 9.55 2.63 0 TGACCGTTCGTCTTATTCAAAAA 1681 - 0.59 0.22 0.44 0 0.25 0 0 0 0 0 0 TTTGTGAGATATGTAAAATTATA 1706 + 0 0 0 0 0.25 0 0 0 0 0 0 TATGCCTACATAAAAATATATTT 1727 - 0 0 0 0 0 0 0 0 0 0 0 AACAATGAATCAAATGATAAGAA 1750 - 0 0 0 0 0 0 0 0 0 0 0.23 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G29980 3928 LOC_OS12G29980.2-2 osa-miR2123c 1650 1671 LOC_OS12G29980 3928 LOC_OS12G29980.2-2 osa-miR2123b 1650 1671 LOC_OS12G29980 3928 LOC_OS12G29980.2-2 osa-miR2123a 1650 1671 >LOC_OS12G34980.1-2 GTACCTCTATGCTTCATGGAAATAACAGTGCATAGTCATCAGTAAACAACCTGAAATATTCAAATGTGCATGGTTTAGAATCCTGTGATGGCTTTTCTTTTTGACCAACAGCAAAAAATAAAACCTGTGATAACATAATCAAGCAATTTTCCAAATCTCAAACTCCCCTACACATCAGAGCTTAACATATTTTCATGATGCATAAGGGGCATCACAAACATATGTGGGTTGCTAACAGAAATAACTACAGAAACTTTTGGTGCACAGGTGCAGAATTGATACTACAAAAATAAAAGGCTACCAAATCAATTGATAGCACATGCAGGGATACTTCCCCACTCTTATTGAATTTATAGCAACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATGTGCCTAGATTCATTAGCATCTATATAAATGTGGGCAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGCATTTTCCCCCCTATGAACTTGCAGGGGCTATCTTTAGCAAGGGCTATGTTCCTTGGTCCTTGCTTCAGCTTGTTGCGAACCATTCCAGTAGGATATTTAACAGACCCCTCATGAGTATGTGAATGGTAAAAGTGAGAATCAATCGGTAGTACAAATGTCCTAACTGCAGCAAGACGAATCATGCATGGATTCATCTCCTTGCAATACAGCTTGAGCCTAAGGGAAAACATTTTGCAAATATTTAGGGGTAGTAACATTTTGCAAATATTTAGGGGTAGTAACATTTTGCAGACATATAATATTTGTTATCTCATAGCCATCATCTTTGGTTTTTATCATAATAGTCATCATGTTTTAATGGGATTATTGACCATTATTCATGCCAATCCAAGAGTTTAAGGAGATGTAATGGCAATCCACAATTGACAATACAAAGCAAAATTCTTTGAGATGTTTTAGAGTAGAGAGTAAAAAGGGCAGCATCAAGAGTACAATTTGCCCAACAATTAACTACATTTTGTTGTGATACTTTGACATACTATGAAGATTCTATATGAAAAGCTCATGCAAAAAATGCTAATGAATAATGGTTGTGTTAATACTACAGTTCTGCGATAACAGGGTATTATTGATTTGCAAGTGCTGGTCATTAAAGATTCAGGCAGTAAAGATGAAGTTGTCAATACATATATCAGATATTTATCGTATACTGTATACTTATATGCATATTTTGCTATACAGTATCATTTTATTGTTGGGCAAAGGGAAAATAGAAAATCCAAGTTCAGTTATGCATAGCATGTCGTCAGTCTCACATATGTTTTCTTTTCCTAATTATGCTCCTGTTTATATTTTGTTTTGACAGTTCAATGCCCCATTCATATTATTGTGTTGAGTGGAACTTAGAACACATATGTGATAGAATTATGCATGTTTGTTCACCATCAATCTAGCTAATTTCACCTTATCCAAAAAAAAAATGGAAATATTTGCTGTGTTACATTGTTGCTACCATTCCTTATATTTAGTAATGTCACGGGTGTATGTAG PhaseCut63: +Start +End FragmentLength FragmentNumber 1213 1357 24 8 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CCGTTTCACAATGTAAGTCATTCT 1211 - 39.89 7.31 39.11 6.72 1.99 0 0 0 19.46 19.74 5.14 AGCATTTCCCACATTCATATTGAT 1235 - 13.82 6.86 15.95 2.04 13.4 0 0 0 62.78 8.06 10.29 CATTTCCCACATTCATATTGATGT 1237 + 0 0 0 0 0 0 0 0 0 0.16 0 GTTAATGAATCTAGACATATATAT 1259 - 0.2 0 0 0 0.25 0 0 0 0 0 0 TAATGAATCTAGACATATATATGT 1261 + 0 0 0 0 0.5 0 0 0 0 0.82 0 GTGCCTAGATTCATTAGCATCTAT 1283 - 0.2 0.22 0 0.2 0.74 0 0 0 0.73 0.16 0.47 AAATGTGGGCAATGCTAGAATGAC 1309 + 0 0 0.22 0 0 0 0 0 0.73 0 0 TTACATTGTGAAACGGAGGAAGTA 1333 + 0.39 0 0.44 0 0 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G34980 3607 LOC_OS12G34980.1-2 osa-miR1436 1204 1224 LOC_OS12G34980 3607 LOC_OS12G34980.1-2 osa-miR1436 1204 1224 PhaseCut85: +Start +End FragmentLength FragmentNumber 1218 1281 21 4 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TCACAATGTAAGTCATTCTAG 1216 - 3.16 1.77 0.66 3.05 0.5 0 0 0 0 0 0.23 CATTTCCCACATTCATATTGA 1237 - 7.5 4.87 2.84 9.36 20.6 0 0 22.61 0.37 0.16 0.47 TTTCCCACATTCATATTGATG 1239 + 1.18 0 0 0 1.99 0.26 0 26.21 0 0 0 TGTTAATGAATCTAGACATAT 1258 - 0.99 0.66 0.22 1.43 0.74 0 0 0 0 0 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G34980 3607 LOC_OS12G34980.1-2 osa-miR1436 1204 1224 LOC_OS12G34980 3607 LOC_OS12G34980.1-2 osa-miR1436 1204 1224 >LOC_OS12G39940.1-2 GTACGAAGACTAAAGTATATATTACTCTTAAAAAGTATTTCAGTCAAATTATATATTTACTGACGCAGTAATTTTAGGTGTTAGACACCAGACATATTATTTTATTATTTTTGTGAAAACGGAGAGAGAAATAGCATGAAAAGTAACAAAATGCTCCCATGTCGATAGACTTTTGTATAGACTGTGCTCAATTTGAACTAGAACAATCCCCTCTTCTTGAACCCTAGGTTTTGATGGCGACAAATAGAGGGACCTAAAGTGAACTTATTCCATCTTGTTTTGCAAAGGAATAAGTTTATTTGTGGTCACTTAACTTTACACCCAATCCGATTTTCGTGCTTCAACACAAAAACCATATACGACCGGTCCCCGAACTATCAAAACAAACAAGGTCCCTCGATGGTTTGGAAGGCGACTTTGATTGATGTGGCACATACGGGGTTGGTTTGACTATGTTTTCATCCCATATGATATTGTTGTGACATTTACATGGCAATTTGATTCCGAAAAAATAATAAAAACCGTGGGTCCACATGTCAGCTAAAAAAATACTCCCTCCGTTTTGAAATATTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAACTTTCGTGAAATATGTAAAATTATATGCCTACATAAAAATATATTAAATAATGAATCAAATAATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTAAAAAAGTCAACGGCGTCAAACATTTCGAAACGGAGGGAGTATAAATAAAGTAGGCCCCACATGTCATCCTTACTCCTCTCATCTCTCTCTCTCCCCTGCACTGCAAGGAGAAGGCAACGGGTGGCGCTGAGGCCGGACCGCCTCATCCACCCTCTCTGCCTGCTTGAGCTGCTGAGGTTGGATTGCTCGGATGTGTTAGAGTTGTGATCCAAATTCATTTACACTTAATAAAGGCCAGCTTCTACCGTAGTGGAGCGGAGGCCCGTCGCCGGTAGGCTTAGGCCAGAGCCCCCGCGGTATGGGTATGGATCCTAATACCTTTTAGGGTTCCACCATATATAAACCTCTTGTAAGCCATCGTGCGGCGTTGTAACCTCACCCCAGATATAGTGAAGATATTTTGCTGGCTAGCGTCCGTGGTTTTTTCTCTCCTGTTTTAGGAGGGTTTTCCACGTTAAATCTCATATCTTCTATGATTAATCTATTGTTTTTTATCGTTTGTTTGCCTATCATTTTCTAACAG PhaseCut42: +Start +End FragmentLength FragmentNumber 1038 1110 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 CGTTGACTTTTTAGCACATGTTTG 1036 - 1.38 0 0.87 0.2 0.99 0 0 0 0 4.61 0 ACCGTTCGTCTTATTCAAAAACTT 1060 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 GTGAAATATGTAAAATTATATGCC 1086 + 0 0 0 0 0 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123c 1027 1048 LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123b 1027 1048 LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123a 1027 1048 PhaseCut46: +Start +End FragmentLength FragmentNumber 1038 1110 24 3 PhaseCut_HTS_information: HTS_Seq MatchSite HTS_Strand GSM520640_wildtype GSM520639_rdr2 GSM520637_dcl1 GSM520638_dcl3 GSM455965_Total GSM455962_AGO1a GSM455963_AGO1b GSM455964_AGO1c GSM520634_AGO4a GSM520635_AGO4b GSM520636_AGO16 TTGACTTTTTAGCACATGTTTGAC 1038 + 1.18 0 2.4 0.2 11.91 0 0 0 0 22.04 0 ACCGTTCGTCTTATTCAAAAACTT 1060 - 6.71 1.55 9.61 0.81 5.96 0 0 0 6.98 0.99 1.4 GTGAAATATGTAAAATTATATGCC 1086 + 0 0 0 0 0 0 0 0 0 0.33 0 miRU information: Gene_ID Gene_Length Intron miRNA miRU start miRU End LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123c 1027 1048 LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123b 1027 1048 LOC_OS12G39940 2089 LOC_OS12G39940.1-2 osa-miR2123a 1027 1048