R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8 attached base packages: [1] splines grid parallel stats graphics grDevices utils datasets methods base other attached packages: [1] DESeq2_1.4.5 RcppArmadillo_0.4.300.8.0 Rcpp_0.11.2 GenomicRanges_1.16.3 GenomeInfoDb_1.0.2 [6] IRanges_1.22.9 beanplot_1.1 cluster_1.15.2 hash_3.0.1 vsn_3.32.0 [11] Hmisc_3.14-4 Formula_1.1-1 survival_2.37-7 gplots_2.13.0 RColorBrewer_1.0-5 [16] easyRNASeq_2.0.6 DESeq_1.16.0 lattice_0.20-29 locfit_1.5-9.1 Biobase_2.24.0 [21] BiocGenerics_0.10.0 loaded via a namespace (and not attached): [1] affy_1.42.2 affyio_1.32.0 annotate_1.42.0 AnnotationDbi_1.26.0 BatchJobs_1.2 BBmisc_1.6 [7] BiocInstaller_1.14.3 BiocParallel_0.6.1 biomaRt_2.20.0 Biostrings_2.32.0 bitops_1.0-6 brew_1.0-6 [13] BSgenome_1.32.0 caTools_1.17 codetools_0.2-8 DBI_0.2-7 digest_0.6.4 edgeR_3.6.2 [19] fail_1.2 foreach_1.4.2 gdata_2.13.3 genefilter_1.46.1 geneplotter_1.42.0 genomeIntervals_1.20.0 [25] GenomicAlignments_1.0.1 gtools_3.4.1 hwriter_1.3 intervals_0.14.0 iterators_1.0.7 KernSmooth_2.23-12 [31] latticeExtra_0.6-26 limma_3.20.5 LSD_2.5 plyr_1.8.1 preprocessCore_1.26.1 RCurl_1.95-4.1 [37] Rsamtools_1.16.1 RSQLite_0.11.4 sendmailR_1.1-2 ShortRead_1.22.0 stats4_3.1.0 stringr_0.6.2 [43] tools_3.1.0 XML_3.98-1.1 xtable_1.7-3 XVector_0.4.0 zlibbioc_1.10.0 >