SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries

Supplemental Data

• SupplementalFigureS1 (.pdf, 1.3 MB) - Supplemental Figure S1 clustering density
• SupplementalFigureS2 (.pdf, 721 KB) - Supplemental Figure S2 consistency heatmap screenshots
• SupplementalFigureS3 (.pdf, 297 KB) - Supplemental Figure S3 pairwise comparison
• SupplementalFigureS4 (.pdf, 2.1 MB) - Supplemental Figure S4 volcano plots
• SupplementalFigureS5 (.pdf, 543 KB) - Supplemental Figure S5 matching quality
• SupplementalInformationS1 (.pdf, 78 KB) - Supplemental Information S1 SWATH Q1 Variable Windows Creation
• SupplementalInformationS2 (.pdf, 142 KB) - Supplemental Information S2 Chromatography Profiles 5600
• SupplementalInformationS3 (.xlsx, 13 KB) - Supplemental Information S3 Library Info
• SupplementalInformationS4 (.pdf, 290 KB) - Supplemental Information S4 RT Prediction
• Supplemental R package info (.pdf, 295 KB) - Supplemental R package information
• Supplemental Table Qvalue (.pdf, 79 KB) - Supplemental Table Q-value Evaluation
• Supplemental Table S1 (.xlsx, 11 KB) - Supplemental Table S1 Peakview parameter
• Supplemental Table S2 (.xlsx, 3.0 MB) - Supplemental Table S2 Anova Table
• Supplemental Table S3 (.xlsx, 2.7 MB) - Supplemental Table S3 T Test Table
• Supplemental Table S4 (.xlsx, 10 KB) - Supplemental Table S4 Accuracy Human TN
• SwathXtend package (.zip, 711.2 MB) - SwathXtend package