Supplementary Table S1. DNA-validated rearrangements identified by the STA discovery pipeline.,,,,,,,,,,,,,,,,,,,
5P_PARTNER,3P_PARTNER,STUDY,TCGA_ID,5P_CHR,3P_CHR,5P_STRAND,3P_STRAND,5P_RNA_BREAK,3P_RNA_BREAK,5P_DNA_BREAK,3P_DNA_BREAK,5P_EXON_END,3P_EXON_START,FRAME,RNA_SPAN_READS,DNA_DISC_PAIRS,DNA_SPAN_READS,ALT_TRANSCRIPT_PRESENT,UPSTREAM_3P_BREAK
CPT1A,nc_chr2,BLCA,TCGA-DK-A1A6,11,2,-,+,68579905,101264821,68579729,101260674,CDS,NA,NA,2771,48,21,N,N
VGLL4,LIMD1,BLCA,TCGA-BL-A0C8,3,3,-,+,11744445,45707142,11718803,45685451,CDS,CDS,IF,352,34,6,N,N
SUV420H1,nc_chr11,BLCA,TCGA-DK-A1A6,11,11,-,+,67938482,67922309,67937866,67919719,CDS,NA,NA,305,41,15,N,N
ESRP1,TRIQK,BLCA,TCGA-DK-A1A6,8,8,+,-,95683899,93997124,95685100,94000461,CDS,NA,NA,244,5,7,N,N
nc_chr8,ADAM2,BLCA,TCGA-K4-A3WV,8,8,-,-,36409800,39682416,36360559,39685904,NA,CDS,NA,71,106,10,Y,N
UBFD1,nc_chr16,BLCA,TCGA-DK-A1AC,16,16,+,-,23569600,23736013,23569961,23745044,CDS,NA,NA,92,18,1,Y,N
TRPC4AP,MYH7B,BLCA,TCGA-DK-A3IV,20,20,-,+,33595353,33581137,33594390,33581056,CDS,CDS,IF,112,16,1,Y,N
MTAP,nc_chr9,BLCA,TCGA-FD-A3SP,9,9,+,+,21838009,22384068,21854094,22359651,CDS,NA,NA,128,8,3,N,N
KIAA0430,IQCK,BLCA,TCGA-BT-A2LB,16,16,-,+,15724189,19867809,15720931,19860260,CDS,CDS,OOF,85,10,1,Y,N
EPN2,KCNJ12,BLCA,TCGA-BT-A20Q,17,17,+,+,19140844,21311831,19173324,21307764,UTR,UTR,NA,99,56,24,N,N
ERBB2,nc_chr17,BLCA,TCGA-DK-A1A5,17,17,+,+,37866734,54906921,37867007,54906798,CDS,NA,NA,95,95,70,N,N
ZCCHC24,nc_chr10,BLCA,TCGA-FD-A3N5,10,10,-,-,81192314,80884928,81186783,80900905,CDS,NA,NA,86,28,14,N,N
SNX11,nc_chrX,BLCA,TCGA-DK-A1A6,17,X,+,-,46196548,12233599,46197214,12236355,CDS,NA,NA,77,10,12,N,N
TMEM168,nc_chr7,BLCA,TCGA-FD-A3N6,7,7,-,-,112423753,9587569,112416676,9588424,CDS,NA,NA,81,47,24,N,N
RNPC3,nc_chr6,BLCA,TCGA-GD-A2C5,1,6,+,+,104089657,147151549,104091225,147143199,CDS,NA,NA,40,38,11,Y,N
PSMD11,nc_chr17,BLCA,TCGA-DK-A1AC,17,17,+,-,30781637,28461146,30783599,28475813,CDS,NA,NA,58,16,2,Y,N
ZNF766,nc_chr19,BLCA,TCGA-FD-A3SJ,19,19,+,-,52786666,33647674,52792072,33649385,CDS,NA,NA,25,5,1,Y,N
POLD3,nc_chr11,BLCA,TCGA-G2-A2ES,11,11,+,+,74345740,72280025,74347298,72278263,CDS,NA,NA,50,7,1,N,N
ZNF343,nc_chr20,BLCA,TCGA-C4-A0F7,20,20,-,-,2473345,454594,2463182,458509,CDS,NA,NA,44,52,24,N,N
TPX2,REM1,BLCA,TCGA-DK-A3IV,20,20,+,+,30345385,30070090,30346366,30069640,CDS,CDS,OOF,35,29,1,Y,N
ITPR1,nc_chr7,BLCA,TCGA-GV-A3QF,3,7,+,-,4562778,155892762,4611308,155895621,CDS,NA,NA,19,7,1,Y,N
PCMTD1,RHOT1,BLCA,TCGA-DK-A1AC,8,17,-,+,52773405,30509776,52765195,30509240,CDS,CDS,OOF,44,9,2,N,N
SMCHD1,DLGAP1,BLCA,TCGA-FD-A3SR,18,18,+,-,2747645,4316547,2748944,4317003,CDS,NA,NA,43,7,1,N,N
RFX7,LIPC,BLCA,TCGA-C4-A0F7,15,15,-,+,56471468,58830532,56449387,58766920,CDS,CDS,OOF,24,38,9,Y,N
SYNRG,nc_chr9,BLCA,TCGA-G2-A2EF,17,9,-,+,35936439,16348616,35934118,16336220,CDS,NA,NA,39,9,1,N,N
PTPN14,NSL1,BLCA,TCGA-C4-A0F7,1,1,-,-,214625148,212912943,214622543,212936367,CDS,CDS,IF,40,25,5,N,N
SGSM2,EPN2,BLCA,TCGA-FD-A3SQ,17,17,+,+,2246914,19213198,2257127,19212893,CDS,CDS,IF,40,11,1,N,N
ANKRD28,nc_chr20,BLCA,TCGA-GV-A3JW,3,20,-,+,15807741,17154524,15802018,17149774,CDS,NA,NA,34,3,2,N,N
SVIL,nc_chr10,BLCA,TCGA-DK-A1AC,10,10,-,+,30024680,62727232,30020046,62716127,UTR,NA,NA,11,11,1,Y,N
PAG1,nc_chr8,BLCA,TCGA-FD-A3NA,8,8,-,-,81982347,97919556,81974575,97950161,UTR,NA,NA,34,2,1,N,N
AVL9,BBS9,BLCA,TCGA-G2-A2EJ,7,7,+,+,32535414,33376053,32562577,33373103,CDS,CDS,OOF,34,4,2,N,N
SEMA6A,nc_chr5,BLCA,TCGA-BT-A20T,5,5,-,+,115831947,67746176,115831263,67743249,CDS,NA,NA,32,17,6,N,N
METTL16,VPS53,BLCA,TCGA-DK-A1A6,17,17,-,-,2415053,463813,2409027,465184,UTR,CDS,NA,31,7,4,N,N
nc_chr16,TEKT5,BLCA,TCGA-FD-A3NA,16,16,-,-,2986632,10770038,2986327,10775800,NA,CDS,NA,28,5,2,N,N
EEA1,CRADD,BLCA,TCGA-DK-A1AD,12,12,-,+,93285405,94243746,93272201,94091515,CDS,CDS,OOF,26,4,1,N,N
CLASRP,nc_chr19,BLCA,TCGA-FD-A3SN,19,19,+,-,45567888,47871487,45570433,47872170,CDS,NA,NA,21,4,1,N,N
SH2D6,NCOA2,BLCA,TCGA-GD-A3OS,2,8,+,-,85649813,71082614,85651498,71086129,NA,CDS,NA,26,7,1,N,N
RC3H2,nc_chr9,BLCA,TCGA-BT-A20Q,9,9,-,-,125639750,125077568,125622767,125109891,CDS,NA,NA,22,6,4,N,N
KDM1B,nc_chr6,BLCA,TCGA-K4-A3WV,6,6,+,+,18171710,23742895,18185729,23742802,CDS,NA,NA,22,2,1,N,N
RHOD,nc_chr11,BLCA,TCGA-BT-A3PH,11,11,+,+,66834318,69053829,66835253,69036414,CDS,NA,NA,14,8,3,Y,N
SNX29,NCAN,BLCA,TCGA-GV-A3JW,16,19,+,+,12121301,19344598,12127662,19338569,CDS,CDS,IF,19,11,1,N,N
CPNE8,nc_chr12,BLCA,TCGA-FD-A3B3,12,12,-,-,39117574,38713093,39112205,38782794,CDS,NA,NA,18,18,2,N,N
CUX1,nc_chr7,BLCA,TCGA-C4-A0F7,7,7,+,-,101848450,44750007,101863689,44754313,CDS,NA,NA,17,19,10,N,N
CREBBP,nc_chr16,BLCA,TCGA-H4-A2HQ,16,16,-,-,3900298,2916857,3887427,2946196,CDS,NA,NA,12,6,4,Y,N
KIAA1731,WDR90,BLCA,TCGA-HQ-A2OE,11,16,+,+,93440063,705307,93453174,704412,CDS,CDS,OOF,15,3,1,N,N
USP34,FAM161A,BLCA,TCGA-BL-A13J,2,2,-,-,61486846,62054393,61484998,62054485,CDS,CDS,IF,14,3,4,N,N
CEP85,nc_chr1,BLCA,TCGA-DK-A1AE,1,1,+,+,26596105,27209905,26596868,27205662,CDS,NA,NA,14,23,12,N,N
AKAP10,nc_chr17,BLCA,TCGA-DK-A1A5,17,17,-,+,19880905,8559390,19876252,8555589,CDS,NA,NA,13,13,10,N,N
B3GALTL,TEX26,BLCA,TCGA-BL-A13J,13,13,+,+,31835219,31548983,31838096,31545571,CDS,CDS,OOF,12,7,3,N,N
SNRNP40,BAI2,BLCA,TCGA-DK-A1A6,1,1,-,-,31740718,32210332,31735940,32222135,CDS,CDS,OOF,12,22,6,N,N
WWC2,nc_chr4,BLCA,TCGA-DK-A1AE,4,4,+,-,184192394,144139320,184195482,144151562,CDS,NA,NA,11,35,16,N,N
MPP5,GPHN,BLCA,TCGA-FD-A3N6,14,14,+,+,67779427,67646295,67782311,67638673,CDS,CDS,OOF,10,14,6,N,N
ANKRD13D,nc_chr1,BLCA,TCGA-BT-A3PH,11,1,+,+,67059651,157894853,67065446,157894655,CDS,NA,NA,9,5,3,N,N
TOMM40,PDZRN4,BLCA,TCGA-FD-A3SO,19,12,+,+,45397323,41900258,45399981,41806141,CDS,CDS,OOF,9,4,3,N,N
ATE1,nc_chr10,BLCA,TCGA-BT-A3PH,10,10,-,-,123549684,124196148,123548626,124207189,CDS,NA,NA,8,6,8,N,N
NEDD9,NECAB3,BLCA,TCGA-G2-A3VY,6,20,-,-,11344531,32248201,11324937,32248670,NA,CDS,NA,8,17,1,N,N
TRIM6,nc_chr13,BLCA,TCGA-DK-A1AC,11,13,+,+,5618144,40572047,5625686,40479308,CDS,NA,NA,7,4,2,N,N
ZNF430,KCNIP4,BLCA,TCGA-GV-A3JZ,19,4,+,-,21216990,20852290,21228663,21494054,CDS,CDS,IF,7,2,1,N,N
FAM13C,ZNF365,BLCA,TCGA-BT-A2LA,10,10,-,+,61011335,64382863,61010301,64370966,CDS,CDS,OOF,6,10,1,N,N
FANCA,nc_chr16,BLCA,TCGA-BT-A20V,16,16,-,-,89849267,89987133,89848967,89987816,CDS,NA,NA,6,6,5,N,N
KIAA0947,nc_chr5,BLCA,TCGA-BT-A20V,5,5,+,-,5476192,17162674,5481718,17165027,CDS,NA,NA,6,8,4,N,N
RAB11FIP4,nc_chr17,BLCA,TCGA-BT-A2LA,17,17,+,+,29761140,57518826,29769545,57492914,CDS,NA,NA,6,8,6,N,N
CCT7,nc_chr2,BLCA,TCGA-BT-A3PH,2,2,+,+,73478560,72807760,73479376,72775391,CDS,NA,NA,6,3,2,N,N
URI1,ZNF536,BLCA,TCGA-BT-A2LD,19,19,+,+,30433571,31038850,30466184,31030238,CDS,CDS,OOF,6,3,1,N,N
FRMD6,RTN4,BLCA,TCGA-CF-A1HS,14,2,+,-,52037128,55214834,52096039,55228465,UTR,CDS,NA,6,3,1,N,N
ZNF184,STK38,BLCA,TCGA-GV-A3JZ,6,6,-,-,27434615,36474421,27430965,36475266,NA,CDS,NA,6,78,3,N,N
NAA35,LAMC3,BLCA,TCGA-CU-A3YL,9,9,+,+,88628812,133951218,88629323,133949456,CDS,CDS,IF,5,2,1,N,N
nc_chr1,KLC2,BLCA,TCGA-BT-A3PH,1,11,+,+,22755507,66029213,22778549,66026793,NA,CDS,NA,4,7,4,N,N
KIAA1377,nc_chr11,BLCA,TCGA-C4-A0F0,11,11,+,-,101793491,102341120,101794824,102349525,CDS,NA,NA,4,77,8,N,N
PPFIBP1,nc_chr12,BLCA,TCGA-BL-A13J,12,12,+,+,27677298,27015500,27716575,26989995,UTR,NA,NA,3,11,5,N,N
WIPF2,nc_chr17,BLCA,TCGA-DK-A1A5,17,17,+,+,38375744,27134054,38408150,27126286,UTR,NA,NA,3,2,3,N,N
MCUR1,nc_chr6,BLCA,TCGA-K4-A3WV,6,6,-,-,13792110,5505992,13788937,5514667,CDS,NA,NA,3,3,1,N,N
FGFR3,TACC3,BLCA,TCGA-CF-A3MH,4,4,+,+,1808661,1741429,1808890,1739720,CDS,CDS,IF,4454,3,1,N,N
TPX2,HM13,BLCA,TCGA-GC-A3I6,20,20,+,+,30327424,30115287,30328140,30111608,UTR,CDS,NA,849,24,6,N,N
FGFR3,TACC3,BLCA,TCGA-CF-A3MF,4,4,+,+,1808661,1741429,1808926,1741369,CDS,CDS,IF,182,18,5,N,N
WDR7,nc_chr18,BLCA,TCGA-GV-A3JW,18,18,+,-,54398828,49172719,54421910,49179081,CDS,NA,NA,92,22,2,N,N
nc_chr16,KIF22,BLCA,TCGA-CU-A3KJ,16,16,+,+,30125791,29808214,30127932,29806198,NA,CDS,NA,63,8,1,N,N
FGFR3,nc_chr9,BLCA,TCGA-BT-A20P,4,9,+,+,1808661,20271493,1809139,20271195,CDS,NA,NA,24,95,50,Y,N
SLC35E3,nc_chr12,BLCA,TCGA-BT-A0S7,12,12,+,+,69145970,69455288,69152536,69455214,CDS,NA,NA,16,6,1,Y,N
UBR5,nc_chr8,BLCA,TCGA-DK-A1A7,8,8,-,-,103309121,100403908,103308737,100430459,CDS,NA,NA,16,14,7,Y,N
FOCAD,nc_chr9,BLCA,TCGA-BT-A20P,9,9,+,+,20951097,20079117,20952054,20012423,CDS,NA,NA,160,781,441,Y,N
PRR12,nc_chr19,BLCA,TCGA-DK-A3X2,19,19,+,+,50103195,42181994,50104525,42176779,CDS,NA,NA,5,13,1,N,N
ITCH,nc_chr20,BLCA,TCGA-BT-A20V,20,20,+,-,32981687,32905685,32988582,32943098,CDS,NA,NA,105,7,3,Y,N
MLLT3,nc_chr9,BLCA,TCGA-BT-A20P,9,9,-,+,20353523,20079117,20348212,20020750,CDS,NA,NA,46,130,73,Y,N
ARL15,nc_chrX,BLCA,TCGA-K4-A3WV,5,X,-,+,53450410,1844960,53448363,1776828,CDS,NA,NA,29,2,1,Y,N
RAB11FIP1,KCNU1,BLCA,TCGA-FT-A3EE,8,8,-,+,37756589,36763226,37736332,36736792,CDS,CDS,IF,82,15,7,Y,N
ZFP82,nc_chr4,BLCA,TCGA-BT-A2LD,19,4,-,-,36900683,75969785,36899388,75997613,CDS,NA,NA,18,5,2,Y,N
STK3,nc_chr8,BLCA,TCGA-FD-A3NA,8,8,-,-,99837743,102252518,99820258,102253783,CDS,NA,NA,17,15,2,Y,N
ACOXL,UNC5D,BLCA,TCGA-FD-A3SJ,2,8,+,+,111850543,35406810,111871673,35195198,CDS,CDS,OOF,5,4,1,Y,N
SLC2A13,nc_chr19,BLCA,TCGA-CU-A0YN,12,19,-,-,40422103,58667987,40403287,58677225,CDS,NA,NA,5,10,1,Y,N
PAPD5,nc_chr11,BRCA,TCGA-EW-A1J5,16,11,+,-,50250106,70858384,50250977,70907132,CDS,UTR,NA,363,67,101,Y,N
CIITA,nc_chr16,BRCA,TCGA-EW-A1PB,16,16,+,+,10996658,10892863,10998559,10867019,CDS,NA,NA,253,23,14,Y,N
NPTN,CLUAP1,BRCA,TCGA-BH-A0AV,15,16,-,+,73879865,3580568,73867819,3577451,CDS,CDS,IF,578,2,11,N,N
TEX2,nc_chr17,BRCA,TCGA-A8-A09I,17,17,-,-,62340528,58162564,62314139,58163604,UTR,NA,NA,442,41,41,N,N
ATG5,nc_chr6,BRCA,TCGA-AO-A124,6,6,-,-,106756239,113667298,106741499,113692534,CDS,NA,NA,332,170,90,Y,N
B4GALT1,nc_chr9,BRCA,TCGA-AN-A04D,9,9,-,+,33135187,13190161,33124864,13187145,CDS,NA,NA,441,19,22,N,N
EFHD1,EIF4E2,BRCA,TCGA-C8-A12Q,2,2,+,+,233537153,233431539,233537708,233430896,CDS,CDS,IF,446,2,2,N,N
GMDS,nc_chr18,BRCA,TCGA-BH-A0HB,6,18,-,+,2116005,7076817,1966460,7052152,CDS,NA,NA,361,15,1,N,N
BAG4,NEDD8,BRCA,TCGA-EW-A1PH,8,14,+,-,38034657,24687637,38036574,24689487,CDS,CDS,IF,367,17,22,N,N
PUM1,nc_chr1,BRCA,TCGA-B6-A0IQ,1,1,-,+,31532051,205688753,31519906,205681346,CDS,NA,NA,216,3,1,Y,N
PIP5K1C,nc_chr17,BRCA,TCGA-A2-A0EY,19,17,-,+,3660964,37561733,3659557,37559152,CDS,NA,NA,321,23,18,N,N
DCAF7,VMP1,BRCA,TCGA-BH-A18R,17,17,+,+,61628176,57808782,61636398,57802423,CDS,UTR,NA,324,116,72,N,N
ACOT9,nc_chrX,BRCA,TCGA-A2-A0D0,X,X,-,+,23739998,23792004,23738172,23791004,CDS,NA,NA,316,15,1,N,N
FUS,nc_chr16,BRCA,TCGA-AO-A03N,16,16,+,+,31196500,30875979,31196587,30875761,CDS,NA,NA,262,6,4,N,N
SEMA4C,WNT5B,BRCA,TCGA-AO-A124,2,12,-,+,97529419,1723568,97527524,1721825,CDS,NA,NA,202,15,8,Y,N
GIGYF2,EFHD1,BRCA,TCGA-B6-A0IJ,2,2,+,+,233613792,233537019,233615102,233535554,CDS,CDS,IF,255,8,1,N,N
EHF,nc_chr11,BRCA,TCGA-B6-A0WX,11,11,+,-,34642775,31710988,34662141,31747322,UTR,NA,NA,163,45,19,Y,N
CAND1,nc_chr20,BRCA,TCGA-AR-A0TX,12,20,+,-,67688936,54604918,67691244,54612825,CDS,NA,NA,222,21,18,N,N
LUC7L3,C17orf64,BRCA,TCGA-BH-A18R,17,17,+,+,48814387,58506723,48815069,58503971,CDS,CDS,OOF,209,5,5,N,N
TUT1,BSCL2,BRCA,TCGA-B6-A0I1,11,11,-,-,62356503,62462183,62354320,62467713,CDS,CDS,IF,213,10,4,N,N
RABEP1,nc_chr17,BRCA,TCGA-A2-A259,17,17,+,-,5212117,48054634,5248716,48072466,CDS,NA,NA,175,60,3,N,N
KIAA1244,nc_chr6,BRCA,TCGA-E2-A14P,6,6,+,+,138564131,138181562,138565285,138167538,CDS,NA,NA,176,6,5,N,N
PGR,nc_chr11,BRCA,TCGA-E2-A15E,11,11,-,-,100996738,101155717,100964503,101161240,CDS,NA,NA,156,10,12,Y,N
ABTB2,nc_chr11,BRCA,TCGA-AC-A2BK,11,11,-,-,34378248,49437306,34253264,49473077,CDS,NA,NA,158,64,56,Y,N
EPHB2,nc_chr1,BRCA,TCGA-A7-A26G,1,1,+,+,23208976,22655376,23213648,22652546,CDS,NA,NA,91,3,3,Y,N
CD59,FBXO3,BRCA,TCGA-A7-A13D,11,11,-,-,33731752,33780147,33726670,33785866,NA,CDS,NA,182,18,11,N,N
URB2,nc_chr1,BRCA,TCGA-AR-A24Z,1,1,+,-,229763506,78022372,229763699,78024180,CDS,NA,NA,183,29,25,N,N
RANBP10,RRP15,BRCA,TCGA-E2-A109,16,1,-,+,67839331,218504290,67816809,218500513,CDS,CDS,OOF,182,24,19,N,N
WHSC1L1,PSD3,BRCA,TCGA-BH-A18U,8,8,-,-,38146005,18513195,38143406,18517094,CDS,CDS,IF,178,390,319,N,N
MTAP,nc_chr9,BRCA,TCGA-AR-A24Z,9,9,+,-,21838009,97726708,21844042,97728770,CDS,NA,NA,177,32,16,N,N
RSL1D1,nc_chr16,BRCA,TCGA-C8-A12L,16,16,-,-,11945265,11956872,11945084,11956932,CDS,NA,NA,166,4,4,N,N
KMT2B,ZBTB32,BRCA,TCGA-D8-A27H,19,19,+,+,36209283,36203819,36209354,36199216,CDS,NA,NA,165,19,8,N,N
ZNRF3,ASCC2,BRCA,TCGA-A8-A094,22,22,+,-,29280054,30221246,29329465,30229572,CDS,CDS,IF,89,26,18,Y,N
PMM2,nc_chr16,BRCA,TCGA-A2-A0EY,16,16,+,-,8906963,22982913,8934447,22991048,CDS,NA,NA,83,13,3,Y,N
FNTA,nc_chr8,BRCA,TCGA-E2-A1LG,8,8,+,-,42927450,63679969,42931714,63736087,CDS,NA,NA,136,42,27,N,N
MYO5B,nc_chr18,BRCA,TCGA-AO-A124,18,18,-,-,47455882,48500881,47448708,48512052,CDS,NA,NA,119,33,45,Y,N
TMEM123,MMP27,BRCA,TCGA-A7-A13D,11,11,-,-,102319543,102563772,102278009,102564395,CDS,CDS,OOF,150,10,7,N,N
UNC13D,SRP68,BRCA,TCGA-A7-A13D,17,17,-,-,73829047,74035423,73828955,74035524,CDS,NA,NA,141,21,7,N,N
SYNRG,CSH2,BRCA,TCGA-E2-A15H,17,17,-,-,35913217,61950699,35912213,61950954,CDS,CDS,IF,145,10,5,N,N
WHSC1L1,RAB11FIP1,BRCA,TCGA-A7-A0D9,8,8,-,-,38153314,37735069,38150618,37742378,CDS,CDS,IF,141,5,2,N,N
ZNF219,HNRNPC,BRCA,TCGA-B6-A0I6,14,14,-,-,21566471,21702388,21564732,21719425,UTR,UTR,NA,122,28,10,N,N
MBD2,DOCK2,BRCA,TCGA-AR-A1AY,18,5,-,+,51715244,169502951,51699168,169500181,CDS,CDS,IF,120,22,14,N,N
SLC22A23,nc_chr6,BRCA,TCGA-BH-A0HB,6,6,-,-,3456140,2990245,3425883,3000466,CDS,NA,NA,103,38,7,Y,N
PRKCSH,nc_chr19,BRCA,TCGA-C8-A12L,19,19,+,+,11552172,7171406,11552299,7169708,CDS,NA,NA,85,25,18,Y,N
HACE1,nc_chr6,BRCA,TCGA-C8-A130,6,6,-,-,105244530,136068143,105244136,136113213,CDS,NA,NA,99,87,80,Y,N
MAVS,nc_chr8,BRCA,TCGA-AR-A256,20,8,+,+,3835388,39626884,3836919,39624819,CDS,NA,NA,85,38,23,Y,N
SLC25A33,nc_chr1,BRCA,TCGA-A7-A26G,1,1,+,+,9613863,8181534,9626589,8096738,CDS,NA,NA,110,4,2,N,N
IL6R,nc_chr1,BRCA,TCGA-B6-A0I1,1,1,+,+,154427057,168907670,154429214,168893756,CDS,NA,NA,61,74,55,Y,N
PTPN2,nc_chr18,BRCA,TCGA-AR-A256,18,18,-,-,12825809,13243332,12820528,13264600,CDS,NA,NA,125,30,21,N,N
nc_chr18,ZNF397,BRCA,TCGA-B6-A0IJ,18,18,+,+,32871196,32837892,32873750,32835972,NA,CDS,NA,116,12,11,N,N
WDR70,nc_chr5,BRCA,TCGA-E2-A15K,5,5,+,-,37381787,41890188,37382330,41891294,CDS,NA,NA,116,5,2,N,N
DCAF6,MPZL1,BRCA,TCGA-A7-A26G,1,1,+,+,167974031,167734820,167979438,167727896,CDS,CDS,IF,113,2,3,N,N
NEMF,nc_chr14,BRCA,TCGA-D8-A27H,14,14,-,-,50312858,50440224,50307746,50440904,CDS,NA,NA,105,13,7,N,N
TECPR2,nc_chr14,BRCA,TCGA-D8-A27H,14,14,+,+,102906946,102826787,102907727,102825586,CDS,NA,NA,37,26,23,Y,N
SORBS2,nc_chr4,BRCA,TCGA-A2-A04T,4,4,-,+,186696381,153562408,186652347,153470498,UTR,NA,NA,81,33,9,Y,N
MLLT4,nc_chr6,BRCA,TCGA-E2-A1LK,6,6,+,-,168291709,124418543,168294317,124419945,CDS,NA,NA,108,17,6,N,N
TAF2,DSCC1,BRCA,TCGA-AO-A124,8,8,-,-,120814034,120859320,120812330,120859595,CDS,CDS,IF,104,60,32,N,N
AFAP1,ABLIM2,BRCA,TCGA-A2-A0D2,4,4,-,-,7776466,7994654,7775273,8003732,CDS,CDS,IF,103,7,4,N,N
RNF43,nc_chr17,BRCA,TCGA-A8-A07I,17,17,-,-,56448272,48634819,56442405,48636240,CDS,NA,NA,102,25,12,N,N
IQCB1,CACNG4,BRCA,TCGA-AO-A03L,3,17,-,+,121553238,65014305,121552745,65006386,UTR,CDS,NA,97,17,10,N,N
LIG3,nc_chr17,BRCA,TCGA-BH-A18R,17,17,+,+,33328422,37333457,33329170,37328596,CDS,NA,NA,37,73,61,Y,N
TCF7,nc_chr5,BRCA,TCGA-E2-A15E,5,5,+,+,133474729,133344350,133475375,133343286,CDS,NA,NA,88,10,5,N,N
EIF4G3,nc_chr1,BRCA,TCGA-BH-A1FC,1,1,-,-,21324094,17548927,21312212,17566584,CDS,NA,NA,34,31,23,Y,N
DDX52,ARL17B,BRCA,TCGA-A2-A0D1,17,17,-,-,35993318,44417140,35993063,44418251,CDS,CDS,OOF,88,6,3,N,N
ATF6,nc_chr1,BRCA,TCGA-A2-A04X,1,1,+,+,161882170,147169730,161886615,147136355,CDS,NA,NA,86,35,27,N,N
RARA,nc_chr17,BRCA,TCGA-A2-A0YG,17,17,+,+,38474700,57208287,38479917,57208133,UTR,NA,NA,25,76,13,Y,N
ACTN2,CHRM3,BRCA,TCGA-AN-A0G0,1,1,+,+,236850099,239841486,236862150,239784137,CDS,UTR,NA,45,51,53,Y,N
LHFPL2,KCNIP1,BRCA,TCGA-BH-A0B3,5,5,-,+,77860636,170145762,77806068,170114047,UTR,CDS,NA,77,3,1,N,N
CCNF,MALL,BRCA,TCGA-GM-A3XL,16,2,+,-,2483068,110843334,2485232,110845251,CDS,CDS,OOF,62,3,1,Y,N
OPHN1,nc_chrX,BRCA,TCGA-A2-A04P,X,X,-,-,67652709,68923668,67595824,68935160,CDS,NA,NA,71,7,2,N,N
CHST15,nc_chr5,BRCA,TCGA-A8-A07I,10,5,-,+,125798031,172761813,125784646,172760647,CDS,NA,NA,81,12,14,N,N
ADNP,nc_chr12,BRCA,TCGA-AR-A0TX,20,12,-,+,49545188,73838632,49542219,73836545,UTR,NA,NA,71,17,21,N,N
SS18L1,CDH4,BRCA,TCGA-E2-A1LL,20,20,+,+,60718945,60469966,60722798,60462966,CDS,CDS,IF,75,32,10,N,N
FDFT1,NEIL2,BRCA,TCGA-AO-A0J2,8,8,+,+,11660440,11640712,11662333,11640626,CDS,CDS,OOF,33,6,3,Y,N
QARS,USP19,BRCA,TCGA-AO-A0J2,3,3,-,-,49135625,49150062,49135563,49151120,CDS,CDS,IF,74,22,19,N,N
FRRS1,nc_chr1,BRCA,TCGA-B6-A0I1,1,1,-,+,100181142,100257730,100179587,100245317,CDS,NA,NA,54,10,5,Y,N
FAM129B,nc_chr9,BRCA,TCGA-A2-A25B,9,9,-,-,130285958,130416281,130282924,130422124,CDS,NA,NA,48,3,3,Y,N
nc_chr5,RAB3C,BRCA,TCGA-AO-A124,5,5,+,+,58233328,58021829,58244463,57950753,NA,CDS,NA,58,36,10,N,N
PTBP2,KAZN,BRCA,TCGA-BH-A1FC,1,1,+,+,97189150,15361245,97211230,15294806,CDS,CDS,OOF,68,8,12,N,N
EVPL,MAP2K6,BRCA,TCGA-E2-A109,17,17,-,+,74023182,67501921,74022273,67476663,CDS,CDS,OOF,57,39,59,N,N
CDV3,TMEM108,BRCA,TCGA-BH-A0B9,3,3,+,+,133293959,133098596,133297306,133085462,CDS,CDS,OOF,65,7,7,N,N
MTERFD1,nc_chr8,BRCA,TCGA-E2-A109,8,8,-,+,97256147,77412794,97252149,77398413,CDS,NA,NA,27,16,4,Y,N
TIA1,TGFA,BRCA,TCGA-AR-A256,2,2,-,-,70475537,70692865,70469595,70730991,CDS,CDS,OOF,36,26,13,Y,N
RFX3,GLDC,BRCA,TCGA-EW-A3U0,9,9,-,-,3525747,6565429,3454554,6567632,UTR,CDS,NA,63,8,15,N,N
MLLT10,nc_chr10,BRCA,TCGA-A7-A13D,10,10,+,+,21827841,21330254,21829560,21315619,CDS,NA,NA,30,6,13,Y,N
DENND6A,nc_chr3,BRCA,TCGA-E2-A1LL,3,3,-,+,57678509,57722629,57654759,57722260,CDS,NA,NA,61,12,9,N,N
ATF6,SH2D1B,BRCA,TCGA-EW-A1PH,1,1,+,-,161772062,162367105,161777845,162368564,CDS,CDS,IF,60,22,7,N,N
SNX27,nc_chr1,BRCA,TCGA-A8-A07I,1,1,+,-,151641111,205251670,151652725,205252142,CDS,NA,NA,54,28,20,N,N
SASH1,nc_chr6,BRCA,TCGA-AO-A0J6,6,6,+,+,148808851,132420071,148818333,132338383,CDS,NA,NA,30,10,2,Y,N
DUSP14,EME1,BRCA,TCGA-A8-A09I,17,17,+,+,35850064,48452546,35869108,48452106,UTR,UTR,NA,56,94,41,N,N
ACVR1B,PCBP2,BRCA,TCGA-B6-A0WX,12,12,+,+,52346555,53849669,52352072,53849277,NA,CDS,NA,48,8,10,N,N
ESR1,CCDC170,BRCA,TCGA-BH-A18R,6,6,+,+,152023140,151857453,152073379,151852051,UTR,CDS,NA,43,12,29,Y,N
TMTC4,FGF14,BRCA,TCGA-A2-A0D2,13,13,-,-,101277789,102845713,101275521,102910443,CDS,NA,NA,54,22,4,N,N
TRAPPC9,COL22A1,BRCA,TCGA-E2-A15H,8,8,-,-,141357856,139768072,141328434,139771457,NA,CDS,NA,32,5,6,Y,N
ZNF462,DNAJC1,BRCA,TCGA-A2-A04T,9,10,+,-,109625636,22095028,109661475,22110542,UTR,CDS,NA,50,10,1,N,N
PPM1D,CCND1,BRCA,TCGA-BH-A18R,17,11,+,+,58725443,69466942,58732538,69466537,CDS,NA,NA,39,65,15,Y,N
SYNE2,nc_chr14,BRCA,TCGA-EW-A3U0,14,14,+,+,64532368,63982942,64533516,63982603,CDS,NA,NA,38,10,4,Y,N
UTP18,ASIC2,BRCA,TCGA-A8-A09I,17,17,+,-,49353352,32090784,49353861,32092552,CDS,NA,NA,50,9,2,N,N
NME2,CEP112,BRCA,TCGA-AO-A0JM,17,17,+,-,49243858,63637183,49243876,63671476,UTR,CDS,NA,43,4,4,N,N
BCAS3,nc_chr17,BRCA,TCGA-BH-A0DG,17,17,+,+,58786686,57919262,58787399,57919192,CDS,NA,NA,39,177,104,Y,N
NOS1AP,MROH9,BRCA,TCGA-A2-A0YG,1,1,+,+,162302915,170983258,162306757,170973372,CDS,CDS,IF,49,48,70,N,N
HOOK1,RAB6A,BRCA,TCGA-AR-A24Z,1,11,+,-,60280852,73390765,60282249,73470721,CDS,CDS,IF,48,2,2,N,N
ARHGAP23,ASIC2,BRCA,TCGA-AR-A0TX,17,17,+,-,36636124,31351032,36636263,31351229,CDS,CDS,IF,47,5,7,N,N
ZNF160,nc_chr8,BRCA,TCGA-BH-A0GY,19,8,-,+,53594890,39274733,53591342,39267829,UTR,NA,NA,33,6,2,Y,N
ARHGAP39,nc_chr8,BRCA,TCGA-E2-A1LK,8,8,-,-,145780944,146297438,145778225,146301356,CDS,NA,NA,46,5,11,N,N
DDX39B,PRPH2,BRCA,TCGA-AR-A1AY,6,6,-,-,31506540,42672349,31505423,42673394,CDS,CDS,OOF,45,8,5,N,N
LRP12,TRAPPC9,BRCA,TCGA-E2-A14X,8,8,-,-,105544135,141034176,105541309,141109861,CDS,CDS,OOF,32,10,3,Y,N
PDE7A,TRIM55,BRCA,TCGA-A2-A04P,8,8,-,+,66753606,67061880,66752615,67060701,CDS,CDS,IF,41,12,9,N,N
ZNF771,ZNF48,BRCA,TCGA-AN-A0AT,16,16,+,+,30419515,30408651,30426786,30408080,CDS,CDS,OOF,41,11,7,N,N
LCOR,CPNE8,BRCA,TCGA-E2-A1LL,10,12,+,-,98593236,39096723,98623417,39100139,UTR,CDS,NA,29,18,8,Y,N
ADIPOR2,FOXJ2,BRCA,TCGA-E2-A1LL,12,12,+,+,1863680,8197356,1878491,8196733,CDS,CDS,IF,40,34,21,N,N
MAST4,NLN,BRCA,TCGA-A2-A25B,5,5,+,+,66449408,65118609,66454585,65111457,CDS,CDS,IF,39,9,4,N,N
IPPK,nc_chr2,BRCA,TCGA-AO-A0JM,9,2,-,-,95405034,18192535,95403605,18204079,CDS,NA,NA,39,3,1,N,N
USP31,nc_chr16,BRCA,TCGA-AR-A0TX,16,16,-,-,23101945,19755120,23099470,19758063,CDS,NA,NA,39,8,5,N,N
RNF13,TM4SF4,BRCA,TCGA-A7-A26G,3,3,+,+,149531140,149216509,149549121,149210330,UTR,CDS,NA,38,3,1,N,N
SFI1,nc_chr18,BRCA,TCGA-A8-A08L,22,18,+,+,31942957,24981464,31944677,24937453,CDS,NA,NA,22,8,5,Y,N
DYRK1A,ZBTB46,BRCA,TCGA-C8-A130,21,20,+,-,38845182,62422143,38848013,62429307,CDS,UTR,NA,38,25,20,N,N
TUBGCP3,FARP1,BRCA,TCGA-GM-A2DF,13,13,-,+,113200013,99098352,113188730,99095244,CDS,CDS,IF,38,39,21,N,N
CTBP2,ADAM12,BRCA,TCGA-A8-A08L,10,10,-,-,126799559,128019078,126728324,128022808,UTR,CDS,NA,37,7,3,N,N
MED1,nc_chr17,BRCA,TCGA-E2-A15H,17,17,-,+,37575970,76700624,37572140,76688279,CDS,NA,NA,14,19,17,Y,N
AGPAT9,nc_chr4,BRCA,TCGA-D8-A27H,4,4,+,+,84518668,84362189,84518881,84348088,CDS,NA,NA,36,9,4,N,N
nc_chr2,TMEM163,BRCA,TCGA-D8-A27H,2,2,-,-,134398928,135260568,134350905,135305249,NA,CDS,NA,35,23,5,N,N
HEYL,COL9A2,BRCA,TCGA-E2-A15E,1,1,-,-,40105218,40777387,40105139,40777679,CDS,CDS,OOF,35,12,4,N,N
DHRS7B,nc_chr17,BRCA,TCGA-A2-A0EY,17,17,+,-,21081655,20983427,21086526,20997115,CDS,NA,NA,19,71,33,Y,N
MXI1,nc_chr10,BRCA,TCGA-A8-A07I,10,10,+,-,112004615,122191172,112036211,122206362,CDS,NA,NA,29,29,15,N,N
MTAP,nc_chr9,BRCA,TCGA-B6-A0IJ,9,9,+,+,21802780,22210663,21814683,22146740,CDS,NA,NA,33,6,5,N,N
PMEPA1,PTGIS,BRCA,TCGA-AR-A0TX,20,20,-,-,56284530,48130932,56245575,48132257,CDS,CDS,OOF,32,5,6,N,N
NPHP4,nc_chr1,BRCA,TCGA-BH-A0B9,1,1,-,-,5993207,7555179,5987859,7564010,CDS,NA,NA,27,6,2,N,N
PCNT,nc_chr21,BRCA,TCGA-E2-A1LG,21,21,+,-,47754682,48074507,47764602,48078541,CDS,NA,NA,17,13,8,Y,N
MAP3K8,nc_chr3,BRCA,TCGA-A8-A09X,10,3,+,+,30723307,190008267,30725326,189996888,UTR,NA,NA,16,9,1,Y,N
TTC27,nc_chr2,BRCA,TCGA-B6-A0RI,2,2,+,-,32903989,7615527,32922594,7615553,CDS,NA,NA,27,8,2,N,N
ATP11C,nc_chrX,BRCA,TCGA-E2-A14P,X,X,-,-,138897037,139769868,138889847,139777285,CDS,NA,NA,21,3,4,Y,N
KHDC1,nc_chr6,BRCA,TCGA-AO-A0J2,6,6,-,-,74001721,74682710,73991379,74721737,CDS,NA,NA,21,19,7,Y,N
DHCR24,nc_chr1,BRCA,TCGA-A2-A04Q,1,1,-,-,55349291,55362208,55348465,55362436,CDS,NA,NA,18,9,3,Y,N
GXYLT2,nc_chr3,BRCA,TCGA-A7-A26G,3,3,+,+,72957710,72731331,72970002,72656484,CDS,NA,NA,20,4,1,Y,N
TM2D3,nc_chr15,BRCA,TCGA-AO-A124,15,15,-,+,102186928,93794036,102185833,93792098,CDS,NA,NA,11,13,11,Y,N
TMEM159,DNAH3,BRCA,TCGA-AR-A0TX,16,16,+,-,21185469,21074004,21189845,21076573,CDS,CDS,IF,28,7,3,N,N
HSF1,ADAMTS12,BRCA,TCGA-BH-A0B3,8,5,+,-,145515556,33596165,145522564,33599229,CDS,CDS,OOF,28,9,9,N,N
PIGL,TBC1D26,BRCA,TCGA-E2-A14P,17,17,+,+,16137384,15643414,16163401,15642945,CDS,CDS,IF,28,6,2,N,N
ESRP2,SLC7A6,BRCA,TCGA-A2-A0EY,16,16,-,+,68265081,68321649,68264843,68313354,CDS,CDS,IF,27,5,5,N,N
DDX42,BRIP1,BRCA,TCGA-A2-A25B,17,17,+,-,61884014,59886118,61885102,59898086,CDS,CDS,IF,27,10,14,N,N
RANBP17,KCNIP1,BRCA,TCGA-BH-A0B9,5,5,+,+,170351554,170145762,170351688,170098647,CDS,CDS,IF,27,4,2,N,N
MEGF8,PRR19,BRCA,TCGA-BH-A0H0,19,19,+,+,42855913,42814423,42856501,42813948,CDS,CDS,OOF,21,38,28,Y,N
UBE2R2,nc_chr9,BRCA,TCGA-E2-A15H,9,17,+,-,33817932,37627367,33884988,37641789,CDS,NA,NA,27,4,2,N,N
MAPKAPK5,ACAD10,BRCA,TCGA-A2-A0YG,12,12,+,+,112308984,112182447,112315776,112180759,CDS,CDS,OOF,26,14,4,N,N
YTHDF2,nc_chr1,BRCA,TCGA-AR-A1AY,1,1,+,+,29070498,28931530,29090190,28931482,CDS,NA,NA,26,17,6,N,N
PITPNM2,nc_chr12,BRCA,TCGA-AR-A256,12,12,-,-,123594932,130521562,123578269,130546255,UTR,NA,NA,13,32,13,Y,N
SGPP2,ALG14,BRCA,TCGA-B6-A0RE,2,1,+,-,223389752,95492816,223395101,95510794,CDS,CDS,IF,26,8,5,N,N
TTC3,nc_chr21,BRCA,TCGA-C8-A130,21,21,+,+,38480746,42849070,38489253,42838700,CDS,NA,NA,22,13,11,N,N
VPS13B,nc_chr8,BRCA,TCGA-E2-A109,8,8,+,+,100287482,99812402,100351372,99722303,CDS,NA,NA,26,27,10,N,N
ARFGEF2,FAM19A5,BRCA,TCGA-AR-A0TX,20,22,+,+,47538547,49042409,47551744,49028808,CDS,CDS,IF,25,7,2,N,N
CERK,SLC25A17,BRCA,TCGA-BH-A0H7,22,22,-,-,47115983,41195087,47114474,41214376,CDS,CDS,OOF,16,6,1,Y,N
CENPV,FERMT1,BRCA,TCGA-E2-A109,17,20,-,-,16247911,6096691,16246525,6097259,CDS,CDS,IF,25,38,47,N,N
LLGL2,CA10,BRCA,TCGA-AO-A0JM,17,17,+,-,73567181,49948165,73567969,49958600,CDS,NA,NA,21,27,20,N,N
FRS2,nc_chr12,BRCA,TCGA-AR-A256,12,12,+,-,69864310,124219050,69894074,124231176,UTR,NA,NA,24,6,12,N,N
TEAD1,nc_chr11,BRCA,TCGA-B6-A0I6,11,11,+,+,12697108,12660848,12765077,12652549,UTR,NA,NA,24,31,12,N,N
PI4K2A,ZDHHC16,BRCA,TCGA-BH-A0B9,10,10,+,+,99433492,99213375,99435036,99212935,NA,CDS,NA,24,4,7,N,N
KIF26B,nc_chr1,BRCA,TCGA-BH-A0AV,1,1,+,+,245583047,246052657,245648000,246035458,CDS,NA,NA,23,5,2,N,N
RAD9A,KDM2A,BRCA,TCGA-C8-A12Q,11,11,+,+,67161261,67024955,67161889,67023067,CDS,NA,NA,23,3,1,N,N
FBXO42,nc_chr1,BRCA,TCGA-A8-A09X,1,1,-,-,16621278,28680059,16611356,28682947,CDS,NA,NA,15,4,2,Y,N
GPR126,nc_chr6,BRCA,TCGA-E2-A14P,6,6,+,+,142691930,142094625,142697600,142080932,CDS,NA,NA,14,20,14,Y,N
CTTN,nc_chr11,BRCA,TCGA-A2-A3KC,11,11,+,+,70279384,72519562,70279683,72507464,CDS,NA,NA,21,4,6,N,N
LPHN3,nc_chr4,BRCA,TCGA-AN-A0G0,4,4,+,+,62910267,64060927,62920906,64017392,CDS,NA,NA,14,15,6,Y,N
AQP11,nc_chr11,BRCA,TCGA-AR-A24Z,11,11,+,-,77301656,119152004,77303903,119154823,CDS,NA,NA,17,77,31,N,N
COPS3,nc_chr20,BRCA,TCGA-E2-A109,17,20,-,-,17179349,11478081,17175347,11478458,CDS,NA,NA,11,44,36,Y,N
DNAJC2,nc_chr7,BRCA,TCGA-A2-A25B,7,7,-,+,102960056,102694370,102958412,102688457,CDS,NA,NA,20,4,4,N,N
CDK12,PPM1E,BRCA,TCGA-A8-A09I,17,17,+,+,37628016,57046900,37629536,57044609,CDS,CDS,OOF,20,3,7,N,N
PTK2B,nc_chr8,BRCA,TCGA-BH-A0DG,8,8,+,-,27183198,22140734,27197107,22143078,UTR,NA,NA,20,24,9,N,N
VPS13D,nc_chr1,BRCA,TCGA-BH-A0DG,1,1,+,+,12395884,24728027,12399161,24723454,CDS,NA,NA,20,24,13,N,N
RAD54L2,ERC2,BRCA,TCGA-BH-A18U,3,3,+,-,51575666,55545304,51623478,56018130,UTR,UTR,NA,20,7,1,N,N
JAG1,nc_chr20,BRCA,TCGA-E2-A109,20,20,-,+,10637046,11482237,10635719,11479267,CDS,NA,NA,20,12,4,N,N
ZNF569,nc_chr2,BRCA,TCGA-EW-A1PH,19,2,-,-,37935809,192751054,37917939,192765222,CDS,NA,NA,16,94,52,N,N
SPSB3,MEIOB,BRCA,TCGA-A2-A0D2,16,16,-,-,1831359,1915836,1828599,1916385,CDS,CDS,IF,10,6,1,Y,N
CD302,ALPL,BRCA,TCGA-AN-A0AT,2,1,-,+,160634449,21880471,160630669,21856721,CDS,UTR,NA,19,19,11,N,N
TEAD2,nc_chr19,BRCA,TCGA-AO-A12H,19,19,-,-,49845695,50181118,49845484,50181543,CDS,NA,NA,7,8,9,Y,N
DSTYK,NAV1,BRCA,TCGA-AR-A24Z,1,1,-,+,205156546,201749549,205149913,201690538,CDS,CDS,OOF,11,71,41,Y,N
ABR,nc_chr17,BRCA,TCGA-B6-A0RE,17,17,-,-,1028518,28916303,1014332,28919716,CDS,NA,NA,19,3,4,N,N
AKAP1,GGA3,BRCA,TCGA-E2-A15H,17,17,+,-,55162759,73242877,55171966,73245814,UTR,CDS,NA,15,40,26,Y,N
TMEM87B,MERTK,BRCA,TCGA-A2-A0D0,2,2,+,+,112813333,112751828,112816546,112748090,CDS,CDS,IF,18,63,50,N,N
C17orf75,TOP2A,BRCA,TCGA-A8-A09I,17,17,-,-,30662342,38569877,30662136,38570981,CDS,CDS,OOF,18,65,71,N,N
TRIM25,TBX4,BRCA,TCGA-AO-A0JM,17,17,-,+,54969379,59560261,54966442,59559370,NA,CDS,NA,11,14,8,Y,N
EIF4ENIF1,SHANK3,BRCA,TCGA-BH-A0H7,22,22,-,+,31864161,51153345,31860036,51148089,CDS,CDS,IF,18,5,1,N,N
PRR12,PRRG2,BRCA,TCGA-E2-A15E,19,19,+,+,50124879,50091754,50127677,50088559,CDS,CDS,OOF,18,4,2,N,N
CUTC,nc_chr10,BRCA,TCGA-EW-A3U0,10,10,+,-,101503829,101523348,101506025,101525238,CDS,NA,NA,18,8,10,N,N
nc_chr17,TUBD1,BRCA,TCGA-A8-A09I,17,17,-,-,49449933,57944110,49448574,57945968,NA,CDS,NA,11,13,8,Y,N
EYA1,nc_chr8,BRCA,TCGA-AO-A0JM,8,8,-,-,72123391,65436223,72120036,65436226,CDS,NA,NA,16,16,8,N,N
USP43,ENDOV,BRCA,TCGA-E2-A109,17,17,+,+,9605017,78398832,9611446,78397656,CDS,CDS,OOF,16,44,44,N,N
TEAD1,PARVA,BRCA,TCGA-E2-A15E,11,11,+,+,12697108,12495292,12703585,12460602,UTR,CDS,NA,16,10,6,N,N
RABEP1,ASPA,BRCA,TCGA-A2-A25B,17,17,+,+,5185815,3397644,5205053,3396330,CDS,CDS,IF,15,11,5,N,N
SFMBT1,nc_chr3,BRCA,TCGA-A7-A13D,3,3,-,-,53079832,53405369,53023121,53436970,UTR,NA,NA,8,21,15,Y,N
SBF2,nc_chr11,BRCA,TCGA-A7-A26G,11,11,-,-,9878005,12732263,9877302,12738109,CDS,NA,NA,12,7,3,N,N
TUSC3,nc_chr8,BRCA,TCGA-AO-A0J4,8,8,+,-,15531345,25007458,15578665,25009287,CDS,NA,NA,15,5,5,N,N
SCARB1,DHX37,BRCA,TCGA-B6-A0I1,12,12,-,-,125348141,125462036,125313563,125462133,CDS,CDS,IF,15,11,13,N,N
RPS6KB1,nc_chr17,BRCA,TCGA-BH-A18R,17,17,+,-,58013638,65424015,58013665,65426920,CDS,NA,NA,9,12,3,Y,N
CASZ1,nc_chr1,BRCA,TCGA-BH-A1FC,1,1,-,-,10856621,88087890,10836100,88089438,UTR,NA,NA,15,10,13,N,N
MAP2K4,DNAH9,BRCA,TCGA-E2-A109,17,17,+,+,12032604,11865184,12034861,11850961,CDS,CDS,OOF,15,4,2,N,N
GRIK5,nc_chr18,BRCA,TCGA-E2-A15E,19,18,-,+,42563501,60924776,42562721,60917724,CDS,NA,NA,15,5,5,N,N
PTEN,nc_chr10,BRCA,TCGA-A2-A04Q,10,10,+,-,89653866,117322685,89655446,117328283,CDS,NA,NA,14,3,8,N,N
SMG1,ANO3,BRCA,TCGA-A2-A0EY,16,11,-,+,18869492,26669256,18868990,26667705,CDS,CDS,IF,14,9,11,N,N
AKAP1,ANKFN1,BRCA,TCGA-A8-A07I,17,17,+,+,55162759,54428127,55163223,54417708,UTR,CDS,NA,14,17,12,N,N
BRWD1,nc_chr21,BRCA,TCGA-C8-A130,21,21,-,+,40596334,39943728,40590928,39943712,CDS,NA,NA,14,37,12,N,N
PTK2,SLC45A4,BRCA,TCGA-A7-A0CE,8,8,-,-,141727697,142264728,141717869,142288575,CDS,NA,NA,13,4,2,N,N
CDK8,IKZF3,BRCA,TCGA-A8-A07I,13,17,+,-,26828906,37988404,26900024,37996527,CDS,CDS,OOF,13,34,20,N,N
PSMD11,CDK12,BRCA,TCGA-A8-A08S,17,17,+,+,30774064,37707291,30776530,37705046,CDS,NA,NA,13,11,9,N,N
ARHGEF16,nc_chr1,BRCA,TCGA-AN-A0G0,1,1,+,+,3396477,2151974,3398003,2149300,CDS,NA,NA,13,69,156,N,N
GIGYF2,CHRND,BRCA,TCGA-AR-A256,2,2,+,+,233613792,233398641,233620953,233398121,CDS,CDS,IF,13,99,12,N,N
SPPL3,nc_chr13,BRCA,TCGA-B6-A0IJ,12,13,-,-,121341648,47320654,121269238,47338798,CDS,NA,NA,13,27,15,N,N
SLFN5,SYNRG,BRCA,TCGA-A8-A07I,17,17,+,-,33570162,35914161,33573902,35915281,UTR,CDS,NA,12,7,4,N,N
CCT5,nc_chr5,BRCA,TCGA-GI-A2C9,5,5,+,+,10256265,10248427,10256750,10244050,CDS,NA,NA,9,15,11,Y,N
ZFYVE26,nc_chr14,BRCA,TCGA-A2-A0YG,14,14,-,-,68232944,68565691,68232803,68565874,CDS,NA,NA,11,3,7,N,N
PBX1,DISC1,BRCA,TCGA-A7-A13D,1,1,+,+,164532548,232094574,164594685,231959371,CDS,CDS,IF,11,28,23,N,N
DAP3,ATF3,BRCA,TCGA-A8-A08L,1,1,+,+,155686919,212788360,155690012,212777923,CDS,UTR,NA,6,7,9,Y,N
CTTN,ACTN3,BRCA,TCGA-A8-A09I,11,11,+,+,70244720,66325498,70246747,66325283,UTR,CDS,NA,11,11,15,N,N
ELF5,CAT,BRCA,TCGA-B6-A0I1,11,11,-,+,34515026,34485652,34511931,34478392,CDS,CDS,IF,11,2,1,N,N
PLEKHA7,nc_chr11,BRCA,TCGA-BH-A18U,11,11,-,+,16873830,23970582,16873008,23969556,CDS,NA,NA,11,9,13,N,N
IST1,nc_chr16,BRCA,TCGA-C8-A12Q,16,16,+,+,71929492,71697809,71931190,71693967,UTR,NA,NA,6,4,7,Y,N
ZNF652,nc_chr17,BRCA,TCGA-E2-A109,17,17,-,-,47388674,47623164,47386472,47652312,CDS,NA,NA,11,13,11,N,N
APTX,GNE,BRCA,TCGA-E2-A15H,9,9,-,-,33001565,36220017,32991808,36221834,CDS,CDS,OOF,11,15,11,N,N
USP31,nc_chr16,BRCA,TCGA-E2-A1LL,16,16,-,-,23113640,23246176,23112203,23342234,CDS,NA,NA,7,9,1,Y,N
PPM1H,USP15,BRCA,TCGA-AR-A0TX,12,12,-,+,63328272,62687960,63227761,62681812,CDS,CDS,IF,10,19,14,N,N
ATP13A3,nc_chr3,BRCA,TCGA-B6-A0IQ,3,3,-,-,194167656,194219772,194166004,194221993,CDS,NA,NA,10,3,4,N,N
YPEL2,PAK1,BRCA,TCGA-BH-A18R,17,11,+,-,57474849,77047327,57475391,77047854,NA,CDS,NA,10,5,5,N,N
MCM9,FAM184A,BRCA,TCGA-C8-A12Q,6,6,-,-,119215191,119338109,119192682,119338335,NA,CDS,NA,7,7,6,Y,N
AKAP1,C17orf67,BRCA,TCGA-E2-A15H,17,17,+,-,55184539,54893419,55187271,54900500,CDS,NA,NA,6,9,12,Y,N
ZFP90,CDH1,BRCA,TCGA-E2-A1LG,16,16,+,+,68573728,68835573,68576136,68777763,CDS,CDS,OOF,10,8,13,N,N
MRPL21,FAM168A,BRCA,TCGA-A2-A3KC,11,11,-,-,68665395,73122581,68664481,73131053,CDS,CDS,IF,9,7,3,N,N
STXBP4,PPM1D,BRCA,TCGA-A8-A09I,17,17,+,+,53124515,58700882,53126019,58699506,CDS,CDS,OOF,9,89,36,N,N
PHF20,nc_chr17,BRCA,TCGA-AO-A03L,20,17,+,+,34389527,60083204,34415364,60076409,CDS,NA,NA,9,34,38,N,N
BRCA1,nc_chr3,BRCA,TCGA-BH-A0H7,17,3,-,-,41267743,197730320,41266925,197738024,CDS,NA,NA,9,5,1,N,N
SLC25A17,nc_chr22,BRCA,TCGA-BH-A18U,22,22,-,-,41188529,35472250,41187089,35512870,CDS,NA,NA,5,7,5,Y,N
INADL,ST6GALNAC5,BRCA,TCGA-EW-A3U0,1,1,+,+,62208227,77528660,62209333,77522549,UTR,CDS,NA,9,19,18,N,N
FBXW7,nc_chr4,BRCA,TCGA-A2-A0D2,4,4,-,-,153456093,153998797,153449645,154003952,UTR,NA,NA,8,4,8,N,N
DUSP12,nc_chr13,BRCA,TCGA-A8-A07I,1,13,+,-,161719935,71242730,161720009,71248600,CDS,NA,NA,8,37,38,N,N
C20orf194,nc_chr17,BRCA,TCGA-AN-A0XR,20,17,-,-,3354695,69490761,3344864,69530733,CDS,NA,NA,8,56,27,N,N
RTN4IP1,nc_chr6,BRCA,TCGA-AO-A124,6,6,-,+,107067077,113265262,107064335,113262021,CDS,NA,NA,8,44,25,N,N
VPS54,nc_chr2,BRCA,TCGA-AR-A256,2,2,-,-,64139479,64530747,64127802,64550206,CDS,NA,NA,8,6,1,N,N
ZNF695,nc_chr1,BRCA,TCGA-AR-A256,1,1,-,-,247130997,247553536,247123707,247557942,CDS,NA,NA,8,11,4,N,N
CLNS1A,nc_chr17,BRCA,TCGA-BH-A18R,11,17,-,+,77336008,37963136,77334464,37953567,CDS,NA,NA,8,15,9,N,N
SH3GL1,nc_chr19,BRCA,TCGA-C8-A12L,19,19,-,-,4400321,4434840,4399802,4435564,CDS,NA,NA,5,22,19,Y,N
RNF141,nc_chr11,BRCA,TCGA-C8-A12Q,11,11,-,-,10552190,89456611,10547187,89473823,CDS,NA,NA,8,5,3,N,N
CDK6,nc_chr7,BRCA,TCGA-A7-A26G,7,7,-,-,92300740,92503047,92263813,92509910,CDS,NA,NA,7,4,5,N,N
GALNT13,nc_chr2,BRCA,TCGA-A7-A26G,2,2,+,+,154997018,154589282,155086420,154585522,CDS,NA,NA,7,3,1,N,N
DMC1,FAM227A,BRCA,TCGA-AO-A124,22,22,-,-,38948671,38982204,38942562,38987315,CDS,CDS,OOF,7,53,26,N,N
NAALADL2,PEX5L,BRCA,TCGA-AO-A0JM,3,3,+,-,175189546,179537764,175259434,179561456,CDS,CDS,IF,7,19,18,N,N
LRRC6,ANP32A,BRCA,TCGA-AR-A0TU,8,15,-,-,133669076,69080258,133653017,69096091,CDS,CDS,OOF,7,6,1,N,N
MELK,nc_chr9,BRCA,TCGA-AR-A1AY,9,9,+,-,36633197,45547838,36640905,45586157,CDS,NA,NA,7,7,7,N,N
COPZ1,HOXC4,BRCA,TCGA-B6-A0I6,12,12,+,+,54718965,54448044,54727761,54447991,CDS,NA,NA,7,17,7,N,N
IPO8,CDH13,BRCA,TCGA-A2-A04P,12,16,-,+,30809618,83205127,30809206,83199677,CDS,CDS,OOF,6,9,3,N,N
RB1,CDADC1,BRCA,TCGA-A2-A0D4,13,13,+,+,49037971,49848427,49038808,49842471,CDS,CDS,OOF,6,10,9,N,N
ADCK2,DPP6,BRCA,TCGA-A8-A07I,7,7,+,+,140390613,154429531,140393927,154375422,CDS,CDS,IF,6,5,6,N,N
MECOM,nc_chr3,BRCA,TCGA-AO-A0JM,3,3,-,+,169381124,161102612,169119596,161061621,CDS,NA,NA,6,15,11,N,N
RAPGEF6,nc_chr5,BRCA,TCGA-AR-A256,5,5,-,-,130797398,130534214,130793126,130536410,CDS,NA,NA,6,3,2,N,N
KANK1,DOCK8,BRCA,TCGA-B6-A0IJ,9,9,+,+,540667,271627,541313,241643,NA,CDS,NA,6,7,1,N,N
WDR12,nc_chr2,BRCA,TCGA-B6-A0IJ,2,2,-,-,203757340,204511545,203754779,204530805,CDS,NA,NA,6,14,7,N,N
LLGL2,nc_chr11,BRCA,TCGA-BH-A0DG,17,11,+,+,73555491,84098802,73558264,84098202,CDS,NA,NA,6,2,1,N,N
RHOT1,nc_chr17,BRCA,TCGA-BH-A18U,17,17,+,-,30469748,50357514,30475578,50359723,CDS,NA,NA,6,35,27,N,N
SIL1,nc_chr5,BRCA,TCGA-EW-A1P8,5,5,-,-,138386627,138080451,138384184,138119187,CDS,NA,NA,6,21,9,N,N
FOXN3,nc_chr14,BRCA,TCGA-EW-A3U0,14,14,-,+,89747294,81708721,89710409,81689317,CDS,NA,NA,6,6,1,N,N
NSRP1,ANKRD13B,BRCA,TCGA-A2-A25B,17,17,+,+,28445191,27934760,28456338,27926059,CDS,CDS,IF,5,10,4,N,N
STK3,RREB1,BRCA,TCGA-AO-A124,8,6,-,+,99591892,7211037,99572689,7196958,CDS,CDS,OOF,5,36,20,N,N
SNX29,nc_chr16,BRCA,TCGA-AO-A124,16,16,+,+,12096900,11698637,12100527,11688152,CDS,NA,NA,5,26,7,N,N
NUDT9,FAM13A,BRCA,TCGA-B6-A0I6,4,4,+,-,88370405,89912301,88371457,89912326,CDS,CDS,OOF,5,3,1,N,N
SKA2,CACNG4,BRCA,TCGA-BH-A18R,17,17,-,+,57232492,65014305,57222484,64980129,CDS,CDS,OOF,5,2,6,N,N
CORO1B,ERBB2,BRCA,TCGA-C8-A12Q,11,17,-,+,67207589,37868181,67207583,37867338,CDS,CDS,OOF,5,8,4,N,N
PRIMPOL,nc_chr4,BRCA,TCGA-C8-A12Q,4,4,+,+,185587218,185220362,185591572,185214469,CDS,NA,NA,5,11,2,N,N
NT5C2,nc_chr10,BRCA,TCGA-D8-A27H,10,10,-,-,104857048,104959262,104856839,105001896,CDS,NA,NA,5,24,13,N,N
ZSCAN25,TPST1,BRCA,TCGA-EW-A1PC,7,7,+,+,99221803,65817492,99227045,65729280,CDS,CDS,OOF,5,5,5,N,N
ZBTB46,nc_chr20,BRCA,TCGA-A7-A0D9,20,20,-,-,62421174,48951782,62399799,48975933,CDS,NA,NA,4,54,4,N,N
ZFP64,nc_chr20,BRCA,TCGA-A7-A0D9,20,20,-,+,50776662,55731999,50749018,55731499,CDS,NA,NA,4,10,3,N,N
PDGFC,nc_chr4,BRCA,TCGA-AN-A0AT,4,4,-,+,157731989,169216834,157712283,169213218,CDS,NA,NA,4,32,6,N,N
HELZ,nc_chr3,BRCA,TCGA-AO-A03L,17,3,-,-,65197245,118596854,65194658,118596900,CDS,NA,NA,4,11,15,N,N
RECQL5,nc_chr17,BRCA,TCGA-AO-A0JM,17,17,-,+,73654378,52856265,73649895,52849851,CDS,NA,NA,4,14,10,N,N
TBK1,nc_chr12,BRCA,TCGA-AR-A0TX,12,12,+,-,64879797,64541460,64880714,64549205,CDS,NA,NA,4,12,9,N,N
ZNF148,FHAD1,BRCA,TCGA-B6-A0IJ,3,1,-,+,125006947,15689138,125003460,15688935,CDS,CDS,OOF,4,12,8,N,N
FCHSD2,THRA,BRCA,TCGA-BH-A18R,11,17,-,+,72548576,38230445,72548092,38229428,NA,UTR,NA,4,39,25,N,N
ARNT,nc_chr1,BRCA,TCGA-C8-A12Q,1,1,-,-,150808756,150872864,150808198,150875117,CDS,NA,NA,4,9,11,N,N
EPN3,nc_chr20,BRCA,TCGA-E2-A109,17,20,+,-,48616676,30422089,48616893,30431867,CDS,NA,NA,4,10,7,N,N
WDPCP,nc_chr2,BRCA,TCGA-EW-A1J5,2,2,-,-,63540383,104621949,63486917,104674791,CDS,NA,NA,4,9,7,N,N
NF2,CLTCL1,BRCA,TCGA-EW-A1PH,22,22,+,-,30079053,19171124,30087900,19171235,CDS,CDS,IF,4,9,1,N,N
TOR3A,RALGPS2,BRCA,TCGA-A2-A25B,1,1,+,+,179057224,178885465,179063154,178881488,CDS,CDS,OOF,3,3,8,N,N
CLTC,nc_chr17,BRCA,TCGA-A2-A25B,17,17,+,-,57768072,57799363,57771060,57810514,CDS,NA,NA,3,52,45,N,N
KDM6B,TMEM95,BRCA,TCGA-A7-A13D,17,17,+,+,7755383,7259918,7755425,7259504,CDS,CDS,IF,3,14,12,N,N
OSBPL2,nc_chr20,BRCA,TCGA-AR-A0TX,20,20,+,+,60864386,49703840,60865472,49703091,CDS,NA,NA,3,17,6,N,N
BUB1B,THBS1,BRCA,TCGA-AR-A256,15,15,+,+,40462882,39879548,40463488,39878117,CDS,CDS,OOF,3,13,3,N,N
AUTS2,nc_chr7,BRCA,TCGA-E2-A14P,7,7,+,+,69064948,68924621,69173996,68890996,CDS,NA,NA,3,14,8,N,N
ETV6,YTHDF2,BRCA,TCGA-EW-A1PB,12,1,+,+,11992238,29095441,12000812,29073619,CDS,CDS,OOF,678,13,10,N,N
TRIP10,nc_chr19,BRCA,TCGA-EW-A1PB,19,19,+,+,6746572,6727399,6749261,6720763,CDS,NA,NA,166,11,10,Y,N
ACER3,NARS2,BRCA,TCGA-AN-A0G0,11,11,+,-,76572123,78180359,76634476,78183971,CDS,CDS,OOF,182,168,87,Y,N
RRM2,nc_chr2,BRCA,TCGA-GM-A3XL,2,2,+,+,10263979,10258279,10264552,10252979,CDS,NA,NA,110,8,3,N,N
ACOT9,APOO,BRCA,TCGA-A7-A13D,X,X,-,-,23739998,23899069,23729915,23902082,CDS,CDS,IF,376,99,69,Y,N
NUMA1,nc_chr2,BRCA,TCGA-C8-A12L,11,2,-,-,71780888,217414167,71753589,217422153,UTR,NA,NA,34,29,12,N,N
DIP2A,PRR4,BRCA,TCGA-AO-A0J2,21,12,+,-,47910632,11001006,47915963,11034658,CDS,CDS,IF,142,9,18,N,N
EIF2S2,nc_chr20,BRCA,TCGA-BH-A0B9,20,20,-,-,32684463,32733930,32682082,32759478,CDS,NA,NA,18,5,5,Y,N
nc_chr9,DENND1A,BRCA,TCGA-C8-A130,9,9,+,-,126319849,126303132,126354621,126450938,CDS,NA,NA,34,12,3,N,N
SMC5,IMMP2L,BRCA,TCGA-AO-A124,9,7,+,-,72882891,110603621,72884897,110866124,CDS,CDS,IF,446,19,26,N,N
MTF2,RPL5,BRCA,TCGA-A7-A13D,1,1,+,+,93581175,93306108,93581454,93305401,CDS,CDS,OOF,112,10,6,N,N
MKL2,nc_chr16,BRCA,TCGA-AO-A0JL,16,16,+,-,14173211,11394672,14194547,11410268,UTR,NA,NA,67,21,3,N,N
ZNF732,DAB1,BRCA,TCGA-A2-A3Y0,4,1,-,-,289227,57611102,284513,57665325,NA,CDS,NA,34,42,15,Y,N
LITAF,nc_chr16,BRCA,TCGA-BH-A0DG,16,16,-,-,11680742,11914154,11668749,11918548,UTR,NA,NA,36,12,3,Y,N
ZNF587,ZSCAN4,BRCA,TCGA-A2-A04X,19,19,+,+,58361439,58187409,58364508,58182676,CDS,UTR,NA,32,11,8,N,N
MBTD1,EFCAB3,BRCA,TCGA-A8-A09I,17,17,-,+,49336504,60451175,49334640,60446213,UTR,CDS,NA,20,11,3,N,N
SBF2,nc_chr17,BRCA,TCGA-A8-A08L,11,17,-,+,10215449,38843508,10205474,38805886,CDS,NA,NA,8,20,8,Y,N
TPRG1,nc_chr3,BRCA,TCGA-AO-A03L,3,3,+,+,188933172,185997642,188949606,185997511,CDS,NA,NA,45,25,15,Y,N
STARD3,nc_chr17,BRCA,TCGA-A8-A09I,17,17,+,+,37816779,37616155,37816961,37614764,CDS,NA,NA,27,79,61,N,N
FXN,nc_chr9,BRCA,TCGA-AO-A124,9,9,+,+,71679951,72867473,71680483,72844801,CDS,NA,NA,47,54,4,Y,N
FBXL20,nc_chr17,BRCA,TCGA-A8-A09I,17,17,-,+,37499433,37091718,37483217,37088656,CDS,NA,NA,35,217,90,Y,N
KHDRBS3,ADI1,BRCA,TCGA-GI-A2C9,8,2,+,-,136594316,3504764,136597723,3513472,CDS,CDS,IF,49,11,3,Y,N
ACER3,UVRAG,BRCA,TCGA-E2-A109,11,11,+,+,76730820,75826968,76731136,75777660,CDS,CDS,IF,60,46,35,Y,N
CCNE1,nc_chr3,BRCA,TCGA-EW-A1PC,19,3,+,+,30308189,75586783,30308338,75498662,CDS,NA,NA,112,78,44,Y,N
TAOK1,ACER3,BRCA,TCGA-A1-A0SM,17,11,+,+,27825539,76687333,27826085,76686394,CDS,CDS,IF,24,4,12,Y,N
INADL,nc_chr1,BRCA,TCGA-AR-A24Z,1,1,+,-,62594617,225142201,62602314,225172082,CDS,NA,NA,10,39,17,Y,N
MBTD1,nc_chr8,BRCA,TCGA-BH-A18U,17,8,-,+,49294695,39393728,49282265,39365086,CDS,NA,NA,21,105,50,Y,N
FNDC3A,nc_chr13,BRCA,TCGA-A7-A26G,13,13,+,-,49720071,81627450,49737134,81656204,CDS,NA,NA,9,2,2,Y,N
KDM2A,nc_chr17,BRCA,TCGA-BH-A18R,11,17,+,-,66888829,29681832,66900777,29684867,CDS,NA,NA,18,7,6,Y,N
STXBP4,MSI2,BRCA,TCGA-A8-A09I,17,17,+,+,53150437,55693331,53152082,55680068,CDS,CDS,IF,12,41,36,Y,N
FBXL20,GDPD5,BRCA,TCGA-A1-A0SM,17,11,-,-,37457254,75167861,37455718,75168283,CDS,CDS,IF,10,7,3,Y,N
FBXL20,MYO1D,BRCA,TCGA-A8-A08S,17,17,-,-,37457254,31107802,37456700,31152902,CDS,CDS,OOF,19,15,11,Y,N
PLD3,ACTN4,BRCA,TCGA-EW-A1PH,19,19,+,+,40854675,39198757,40859588,39197404,UTR,CDS,NA,22,15,7,Y,N
CDK12,nc_chr17,BRCA,TCGA-A8-A08S,17,17,+,+,37666014,31013271,37666288,30987481,CDS,NA,NA,25,15,11,Y,N
RPS6KB1,nc_chr11,BRCA,TCGA-BH-A18R,17,11,+,-,57992064,74209114,57995704,74211680,CDS,NA,NA,10,3,1,Y,N
RAI1,nc_chr20,BRCA,TCGA-E2-A109,17,20,+,-,17627473,21494752,17692306,21510865,UTR,NA,NA,18,42,37,Y,N
LAMA5,nc_chr13,BRCA,TCGA-AR-A0TX,20,13,-,+,60902585,33712692,60902287,33712617,CDS,NA,NA,70,14,4,Y,N
CACNB1,MLLT6,BRCA,TCGA-AR-A0TX,17,17,-,+,37339966,36878931,37334544,36878582,CDS,CDS,OOF,14,12,5,Y,N
TOX3,nc_chr16,COADREAD,TCGA-F5-6814,16,16,-,-,52479906,52596774,52478718,52609501,CDS,NA,NA,114,17,11,N,N
GTF2F2,nc_chr13,COADREAD,TCGA-AZ-4315,13,13,+,+,45725966,46579202,45737242,46577626,CDS,NA,NA,101,3,1,N,N
ZNF460,C19orf18,COADREAD,TCGA-QG-A5YX,19,19,+,-,57792204,58470085,57792972,58472190,CDS,CDS,OOF,70,70,11,N,N
CD274,nc_chr9,COADREAD,TCGA-F5-6814,9,9,+,+,5466829,5381874,5467829,5377963,CDS,NA,NA,37,9,7,Y,N
KPNA6,TMEM39B,COADREAD,TCGA-F5-6814,1,1,+,+,32573735,32566043,32587675,32562144,CDS,CDS,OOF,34,11,3,N,N
ARHGEF1,RPS19,COADREAD,TCGA-F5-6814,19,19,+,+,42397374,42373101,42397802,42367647,CDS,CDS,OOF,30,4,2,N,N
MIB1,nc_chr18,COADREAD,TCGA-QG-A5YX,18,18,+,-,19359646,20543695,19362954,20550689,CDS,NA,NA,21,42,9,N,N
EPC1,nc_chr10,COADREAD,TCGA-A6-A567,10,10,-,+,32635691,17561303,32602053,17542932,CDS,NA,NA,17,48,7,N,N
EPB41L2,nc_chr6,COADREAD,TCGA-QG-A5YV,6,6,-,-,131384295,112637765,131279703,112654112,UTR,NA,NA,11,4,6,N,N
C11orf74,TRIM49B,COADREAD,TCGA-A6-A56B,11,11,+,+,36631789,49053148,36634297,49052573,CDS,NA,NA,5,88,35,N,N
ZWILCH,IQCH,COADREAD,TCGA-QG-A5Z1,15,15,+,+,66807982,67757465,66808396,67722346,CDS,CDS,OOF,5,73,29,N,N
AGAP3,nc_chr7,GBM,TCGA-27-2528,7,7,+,+,150784159,28280076,150793399,28277651,CDS,NA,NA,1753,353,132,Y,N
NFASC,NTRK1,GBM,TCGA-06-5411,1,1,+,+,204951148,156844363,204951828,156844168,CDS,CDS,IF,881,479,226,Y,N
NUP107,nc_chr12,GBM,TCGA-06-0686,12,12,+,+,69096564,67302586,69097356,67301851,CDS,NA,NA,564,2209,1123,Y,N
FKBP8,SLC1A6,GBM,TCGA-14-1034,19,19,-,-,18644080,15061202,18643718,15061988,CDS,CDS,OOF,137,11,2,Y,N
PATL1,TECTA,GBM,TCGA-26-5132,11,11,-,+,59434326,121058541,59429534,121054281,CDS,CDS,OOF,151,14,11,Y,N
CARD8,SULT2B1,GBM,TCGA-06-5415,19,19,-,+,48752780,49099996,48746492,49099277,UTR,CDS,NA,96,13,7,Y,N
C12orf5,TSPAN9,GBM,TCGA-06-0157,12,12,+,+,4430469,3310343,4432813,3258574,CDS,UTR,NA,150,126,99,Y,N
POR,nc_chr7,GBM,TCGA-14-1402,7,7,+,+,75583498,54715336,75599932,54642183,CDS,NA,NA,53,832,405,Y,N
LHPP,FANK1,GBM,TCGA-02-2483,10,10,+,+,126205840,127668730,126242157,127658501,CDS,CDS,OOF,43,214,78,Y,N
POLL,nc_chr10,GBM,TCGA-02-2483,10,10,-,-,103340005,128799873,103336106,128800622,CDS,NA,NA,52,425,90,Y,N
ADAM17,NHEJ1,GBM,TCGA-19-2629,2,2,-,-,9633876,220023084,9633825,220024259,CDS,CDS,OOF,95,5,3,Y,N
BTBD1,nc_chr1,GBM,TCGA-06-0125,15,1,-,+,83735503,26323666,83729996,26323503,CDS,NA,NA,105,9,4,Y,N
PDCD11,nc_chr10,GBM,TCGA-15-1444,10,10,+,+,105194732,112107329,105194764,112106639,CDS,NA,NA,67,19,4,Y,N
ZNF544,AP2A1,GBM,TCGA-32-1970,19,19,+,+,58758160,50285014,58765167,50272894,CDS,CDS,IF,54,7,5,Y,N
ZC3H18,CHMP1A,GBM,TCGA-06-0210,16,16,+,-,88636974,89713739,88641864,89714604,UTR,CDS,NA,37,16,13,Y,N
ADCY1,nc_chr7,GBM,TCGA-06-0210,7,7,+,+,45743345,46636928,45743646,46619060,CDS,NA,NA,33,18,9,Y,N
HIP1,nc_chr7,GBM,TCGA-14-1402,7,7,-,-,75368119,57543364,75316251,57550070,CDS,NA,NA,21,861,91,Y,N
RBMS2,LITAF,GBM,TCGA-06-0157,12,16,+,-,56915873,11650591,56942378,11711715,CDS,UTR,NA,33,9,4,Y,N
PGS1,nc_chr17,GBM,TCGA-19-2629,17,17,+,+,76374889,76180150,76376663,76177849,CDS,NA,NA,29,14,7,Y,N
TMEM192,TMEM184C,GBM,TCGA-19-2620,4,4,-,+,166021780,148593018,166014941,148586205,CDS,NA,NA,24,10,3,Y,N
CLPTM1,nc_chr19,GBM,TCGA-32-1970,19,19,+,-,45488561,38773464,45490312,38783068,CDS,NA,NA,12,13,7,Y,N
FOXK1,nc_chr7,GBM,TCGA-06-2557,7,7,+,-,4722499,50456277,4747165,50460420,CDS,NA,NA,15,27,3,Y,N
SCAF8,nc_chr6,GBM,TCGA-02-2483,6,6,+,+,155136950,152614537,155138914,152607927,CDS,NA,NA,13,11,12,Y,N
CEP85L,nc_chr1,GBM,TCGA-14-2554,6,1,-,-,118953616,206856455,118934078,206856724,CDS,NA,NA,11,11,5,Y,N
RHEB,PRKAG2,GBM,TCGA-14-1402,7,7,-,-,151216546,151372723,151194747,151455106,CDS,CDS,IF,13,34,5,Y,N
FAM219A,POLN,GBM,TCGA-06-0744,9,4,-,-,34458202,2097660,34448685,2112643,CDS,CDS,OOF,14,32,9,Y,N
nc_chr12,NUP107,GBM,TCGA-26-5135,12,12,+,+,70084572,69114898,70087293,69114475,NA,CDS,NA,4,937,361,Y,N
EIF2AK2,nc_chrX,GBM,TCGA-06-2570,2,X,-,-,37384051,104861856,37382977,104862982,UTR,NA,NA,13,13,3,N,N
CLEC16A,TXNDC11,GBM,TCGA-41-5651,16,16,+,-,11076848,11778101,11082484,11779627,CDS,CDS,OOF,11,10,3,Y,N
GNA14,nc_chr9,GBM,TCGA-06-0744,9,9,-,+,80143985,83251232,80110168,83247656,CDS,NA,NA,7,305,71,Y,N
CNST,nc_chr1,GBM,TCGA-27-2523,1,1,+,+,246755243,211723696,246764779,211679413,CDS,NA,NA,5,17,12,Y,N
PTEN,nc_chr10,GBM,TCGA-06-0686,10,10,+,+,89653866,90139257,89654022,90138919,CDS,NA,NA,12,14,11,N,N
NFX1,nc_chr9,GBM,TCGA-06-0210,9,9,+,+,33303266,23245888,33305899,23237546,CDS,NA,NA,4,17,12,Y,N
ALDH3A2,nc_chr17,GBM,TCGA-41-5651,17,17,+,+,19555945,15141598,19560174,15135459,CDS,NA,NA,4,8,8,Y,N
KIF26B,nc_chr1,GBM,TCGA-02-2485,1,1,+,+,245775278,242156080,245799536,242151307,CDS,NA,NA,2,423,173,Y,N
JAK2,nc_chr9,GBM,TCGA-32-1970,9,9,+,-,4986022,8079262,4987566,8150198,UTR,NA,NA,5,7,4,Y,N
CHMP1A,SPIRE2,GBM,TCGA-06-0210,16,16,-,+,89715759,89924746,89714844,89924266,CDS,CDS,IF,2,16,4,Y,N
MDM1,PTPRR,GBM,TCGA-26-5135,12,12,-,-,68724887,71158558,68721890,71166303,CDS,CDS,OOF,3,4,4,Y,N
MYO16,nc_chr13,GBM,TCGA-06-0210,13,13,+,-,109562498,112169437,109575446,112175845,CDS,NA,NA,2,56,53,Y,N
SNX9,TMEM181,GBM,TCGA-06-0211,6,6,+,+,158296208,158994452,158314803,158970762,CDS,CDS,OOF,2,21,10,Y,N
ABCA2,nc_chr3,GBM,TCGA-06-5415,9,3,-,-,139909142,197502496,139908791,197502735,CDS,NA,NA,201,15,9,Y,N
KDR,nc_chr4,GBM,TCGA-26-5135,4,4,-,-,55953774,54985232,55950988,54986680,CDS,NA,NA,21,644,164,Y,N
UBXN7,RPL39L,GBM,TCGA-06-5415,3,3,-,-,196159198,186845850,196135358,186857980,CDS,UTR,NA,399,12,9,Y,N
MRPS17,nc_chr7,GBM,TCGA-06-0211,7,7,+,+,56019623,54411334,56019730,54388544,UTR,NA,NA,427,165,71,Y,N
GBAS,nc_chr7,GBM,TCGA-06-2557,7,7,+,+,56052571,91760083,56059059,91759719,CDS,NA,NA,270,29,22,Y,N
RMI1,STX17,GBM,TCGA-06-0744,9,9,+,+,86595806,102691060,86607017,102678765,NA,CDS,NA,42,227,103,Y,N
MARS,nc_chr12,GBM,TCGA-06-2570,12,12,+,+,57884427,59631906,57891860,59628861,CDS,NA,NA,221,22,2,Y,N
CREB5,KCNH2,GBM,TCGA-27-2528,7,7,+,-,28610155,150646137,28626974,150648833,CDS,CDS,OOF,47,670,313,Y,N
SRGAP1,nc_chr12,GBM,TCGA-26-5135,12,12,+,-,64480806,67930829,64485098,67962125,CDS,NA,NA,14,749,297,Y,N
GNG7,SGTA,GBM,TCGA-14-1402,19,19,-,-,2702644,2769089,2681943,2771342,UTR,UTR,NA,39,27,1,Y,N
ARID1B,TIAM2,GBM,TCGA-19-5960,6,6,+,+,157100605,155411423,157148420,155371802,CDS,UTR,NA,65,202,23,Y,N
CASD1,VWC2,GBM,TCGA-06-2557,7,7,+,+,94147635,49951630,94147687,49869986,CDS,CDS,OOF,32,14,3,Y,N
CHN2,TSPAN33,GBM,TCGA-27-2528,7,7,+,+,29186576,128801520,29219486,128770781,CDS,CDS,OOF,141,253,146,Y,N
MARS,nc_chr12,GBM,TCGA-02-2485,12,12,+,-,57892406,57856659,57894301,57863875,CDS,NA,NA,12,67,17,Y,N
RAP1B,nc_chr12,GBM,TCGA-26-5135,12,12,+,-,69004823,58265871,69029014,58292595,UTR,NA,NA,47,728,270,Y,N
TMBIM4,nc_chr12,GBM,TCGA-06-0686,12,12,-,-,66546051,69371801,66542000,69392802,CDS,NA,NA,10,1003,573,Y,N
STOX1,nc_chr10,GBM,TCGA-02-2483,10,10,+,-,70646374,121156236,70651803,121157314,CDS,NA,NA,10,577,165,Y,N
PPP6R2,nc_chr22,GBM,TCGA-06-0745,22,22,+,+,50878478,29137555,50879211,29136205,CDS,NA,NA,14,9,8,Y,N
MRPL50,ERP44,GBM,TCGA-06-0744,9,9,-,-,104160783,102822454,104157430,102849037,CDS,CDS,OOF,386,263,96,Y,N
GNS,nc_chr12,GBM,TCGA-19-2624,12,12,-,+,65136921,67526214,65136231,67516493,CDS,NA,NA,188,34,19,Y,N
PPP1R12B,ZNF346,GBM,TCGA-06-5415,1,5,+,+,202465950,176471390,202493920,176470938,CDS,CDS,IF,8,10,13,Y,N
KATNBL1,TNPO3,GBM,TCGA-26-5135,15,7,-,-,34502152,128624313,34480296,128672095,UTR,CDS,NA,5,31,2,Y,N
RAP1B,CPM,GBM,TCGA-06-0686,12,12,+,-,69004823,69326620,69029470,69355880,UTR,UTR,NA,78,43,1,Y,N
ZNF234,nc_chr6,GBM,TCGA-19-2620,19,6,+,-,44654658,58239320,44656424,58242415,CDS,NA,NA,7,11,7,Y,N
ERCC2,nc_chr19,GBM,TCGA-32-1970,19,19,-,-,45860528,42779014,45858367,42782812,CDS,NA,NA,8,34,5,Y,N
nc_chr12,MDM2,GBM,TCGA-19-2624,12,12,-,+,69207408,69236109,69174886,69212604,CDS,NA,NA,162,44,3,Y,N
NELL2,nc_chr5,GBM,TCGA-06-0157,12,5,-,-,45000952,124670582,44988046,124737057,CDS,NA,NA,107,4,8,Y,N
JAZF1,CPT1C,GBM,TCGA-32-1970,7,19,-,+,28220082,50211980,28209322,50209979,CDS,CDS,OOF,17,11,6,Y,N
NUP107,CYP27B1,GBM,TCGA-19-2624,12,12,+,-,69129124,58157959,69129605,58158013,CDS,CDS,OOF,22,21,9,Y,N
XPO5,nc_chr12,GBM,TCGA-06-0686,6,12,-,+,43536448,66417389,43536168,66412306,CDS,NA,NA,17,579,169,Y,N
XRN1,SMYD3,GBM,TCGA-14-1402,3,1,-,-,142166712,246093239,142159651,246283441,CDS,CDS,IF,27,15,4,Y,N
ADAMTS17,LPAR1,GBM,TCGA-14-1034,15,9,-,-,100589062,113638002,100588540,113658174,CDS,CDS,OOF,24,53,31,Y,N
RERE,nc_chr1,GBM,TCGA-27-2528,1,1,-,-,8616534,7814192,8609161,7820380,CDS,NA,NA,9,8,3,Y,N
ZNF610,RALA,GBM,TCGA-32-1970,19,7,+,+,52839759,39745722,52846844,39736369,UTR,CDS,NA,34,10,1,Y,N
FGFR2,nc_chr10,GBM,TCGA-02-2483,10,10,-,+,123243212,128578141,123241618,128573474,CDS,NA,NA,5,36,52,Y,N
TMEM51,nc_chr1,GBM,TCGA-06-5415,1,1,+,-,15480450,15216520,15481925,15236530,UTR,NA,NA,8,12,9,Y,N
CD2AP,nc_chr6,GBM,TCGA-06-0686,6,6,+,-,47549801,45806219,47552577,45819549,CDS,NA,NA,8,684,156,Y,N
OS9,KIF5A,GBM,TCGA-41-5651,12,12,+,+,58090156,57960909,58097370,57952470,CDS,CDS,IF,71,34,8,Y,N
ATP2B4,NFASC,GBM,TCGA-06-5411,1,1,+,+,203596347,204889760,203636765,204865081,UTR,UTR,NA,19,10,5,Y,N
TM9SF4,nc_chr20,HNSC,TCGA-CV-5443,20,20,+,-,30730908,34065863,30731883,34066453,CDS,NA,NA,37,13,2,Y,N
RBM25,nc_chr14,HNSC,TCGA-BA-4076,14,14,+,-,73554869,65967704,73562782,65969860,CDS,NA,NA,78,38,34,Y,N
ITCH,DEFB118,HNSC,TCGA-CV-5443,20,20,+,+,33059320,29960660,33060601,29957415,CDS,CDS,OOF,59,42,9,Y,N
AIG1,nc_chr6,HNSC,TCGA-BA-4076,6,6,+,+,143486320,132398348,143578619,132384731,CDS,NA,NA,44,53,42,Y,N
MIB1,nc_chr18,HNSC,TCGA-CV-7434,18,18,+,+,19371518,20003248,19374877,19994378,CDS,NA,NA,29,10,3,Y,N
PRKRIR,nc_chr11,HNSC,TCGA-CN-4741,11,11,-,+,76066662,76114704,76066589,76096932,CDS,NA,NA,13,36,7,Y,N
DPYD,nc_chr1,HNSC,TCGA-DQ-5625,1,1,-,-,98293670,98542876,98290757,98573824,CDS,NA,NA,35,61,26,Y,N
RLF,SMAP2,HNSC,TCGA-DQ-7591,1,1,+,+,40661436,40872408,40664681,40862635,CDS,CDS,IF,27,10,3,Y,N
NCOA2,nc_chr8,HNSC,TCGA-CN-6998,8,8,-,-,71126138,74920724,71123967,74926699,CDS,NA,NA,28,4,1,Y,N
NLE1,FNDC8,HNSC,TCGA-DQ-7591,17,17,-,+,33466254,33454061,33466133,33453802,CDS,CDS,OOF,26,10,2,Y,N
PTPN14,nc_chr1,HNSC,TCGA-CN-4737,1,1,-,-,214560187,214245781,214558686,214261886,CDS,NA,NA,18,26,20,Y,N
WDTC1,TMEM39B,HNSC,TCGA-DQ-7591,1,1,+,+,27561442,32540552,27564353,32537789,UTR,CDS,NA,23,5,2,Y,N
EIF4G3,KIF17,HNSC,TCGA-CV-6954,1,1,-,-,21377359,21024981,21374641,21026796,UTR,CDS,NA,19,4,1,Y,N
TRIM25,TRIM37,HNSC,TCGA-CR-7385,17,17,-,-,54969379,57060282,54968175,57061646,NA,CDS,NA,13,4,2,Y,N
NR1D2,nc_chr3,HNSC,TCGA-BB-4228,3,3,+,-,24009514,86619689,24015641,86655813,CDS,NA,NA,7,3,2,Y,N
AKAP13,RFX7,HNSC,TCGA-CQ-6219,15,15,+,-,85924029,56379707,85994704,56382927,UTR,NA,NA,13,4,1,Y,N
TRAF3,nc_chr14,HNSC,TCGA-CV-5443,14,14,+,+,103296809,103636890,103336301,103618088,UTR,NA,NA,9,2,1,Y,N
TACC1,nc_chr8,HNSC,TCGA-CN-4725,8,8,+,-,38646337,38947985,38650566,38959433,CDS,NA,NA,6,8,2,Y,N
LYPD1,NCKAP5,HNSC,TCGA-BA-6872,2,2,-,-,133425973,133519738,133414962,133531242,CDS,NA,NA,9,21,6,Y,N
FGD4,nc_chr12,HNSC,TCGA-CV-7100,12,12,+,-,32764217,32793444,32768208,32822468,CDS,NA,NA,14,14,7,Y,N
SART1,CNTN5,HNSC,TCGA-CV-7100,11,11,+,+,65735292,99690275,65738841,99672741,CDS,CDS,OOF,10,8,3,Y,N
nc_chr3,CD96,HNSC,TCGA-BA-5153,3,3,+,+,109630068,111342601,109688285,111329665,NA,CDS,NA,7,15,3,Y,N
PHACTR2,PLAGL1,HNSC,TCGA-BA-4076,6,6,+,-,143999346,144290115,144024250,144320596,CDS,UTR,NA,7,71,37,Y,N
NCKAP5,nc_chr2,HNSC,TCGA-CN-6994,2,2,-,-,134275029,133147412,134255661,133156484,CDS,NA,NA,5,29,8,Y,N
FOXN3,nc_chr14,HNSC,TCGA-CV-7183,14,14,-,+,89656728,86999218,89648647,86994889,CDS,NA,NA,6,8,1,Y,N
nc_chr1,PTCHD2,HNSC,TCGA-CV-6441,1,1,+,+,11120549,11589613,11120845,11588057,NA,CDS,NA,5,2,2,Y,N
ASMTL,P2RY8,HNSC,TCGA-CQ-5323,X,X,-,-,1553915,1585475,1552680,1614579,CDS,UTR,NA,8,3,1,N,N
EML4,MTA3,HNSC,TCGA-CQ-6225,2,2,+,+,42396776,42883340,42402439,42875740,CDS,CDS,IF,5,10,3,Y,N
DOCK1,nc_chr10,HNSC,TCGA-CR-6472,10,10,+,-,129224275,129800436,129224670,129802561,CDS,NA,NA,3,15,4,Y,N
TOP1,nc_chr20,HNSC,TCGA-CV-6948,20,20,+,-,39658095,37165560,39676378,37171148,CDS,NA,NA,3,6,1,Y,N
TMEM255B,nc_chr13,HNSC,TCGA-CV-7416,13,13,+,-,114502407,114502312,114513589,114550557,NA,CDS,NA,4,72,5,N,N
VPS26A,KIAA1279,HNSC,TCGA-CN-5365,10,10,+,+,70892803,70760180,70914494,70751091,CDS,CDS,IF,2,4,1,Y,N
PSMD3,nc_chr17,HNSC,TCGA-CV-5432,17,17,+,+,38151321,37764089,38151502,37762289,CDS,NA,NA,3636,1089,479,Y,N
FGFR3,TACC3,HNSC,TCGA-CV-7100,4,4,+,+,1808661,1741429,1808923,1741366,CDS,CDS,IF,637,6,5,Y,N
LDLR,HSH2D,HNSC,TCGA-CV-7100,19,19,+,+,11200291,16263362,11205563,16261772,CDS,CDS,OOF,145,15,10,Y,N
NIPBL,nc_chr5,HNSC,TCGA-BA-A4IH,5,5,+,+,36962376,37173887,36967690,37116478,CDS,NA,NA,55,3,1,Y,N
TUBGCP3,TFDP1,HNSC,TCGA-CV-7416,13,13,-,+,113219425,114265311,113214188,114259087,CDS,CDS,IF,200,58,30,Y,N
FGFR3,TACC3,HNSC,TCGA-CR-6473,4,4,+,+,1808661,1739325,1808860,1739060,CDS,CDS,IF,431,8,1,N,N
PAN3,nc_chr13,HNSC,TCGA-CV-7255,13,13,+,+,28846208,36756204,28850868,36752785,CDS,NA,NA,18,146,57,Y,N
FBXL20,UNC45B,HNSC,TCGA-CV-5431,17,17,-,+,37557614,33498341,37553156,33497658,CDS,CDS,IF,59,77,45,Y,N
NSD1,nc_chr5,HNSC,TCGA-D6-6823,5,5,+,-,176665508,134187022,176667188,134187226,CDS,NA,NA,10,4,1,Y,N
PIP5K1C,MATK,HNSC,TCGA-CN-4741,19,19,-,-,3700295,3781670,3681384,3783731,CDS,CDS,IF,16,12,4,Y,N
WHSC1,PIBF1,HNSC,TCGA-HD-7753,4,13,+,+,1873269,73539412,1894913,73518163,UTR,CDS,NA,169,23,7,Y,N
TBC1D10A,nc_chr22,HNSC,TCGA-CX-7086,22,22,-,-,30695433,41947892,30693201,41952441,CDS,NA,NA,72,35,14,Y,N
IGHMBP2,nc_chr11,HNSC,TCGA-CQ-5323,11,11,+,+,68676099,69428289,68676909,69428177,CDS,NA,NA,11,12,4,Y,N
WDR36,NREP,HNSC,TCGA-BA-4077,5,5,+,-,110428316,111071204,110430267,111303088,CDS,CDS,IF,14,19,6,Y,N
STX17,NR4A3,HNSC,TCGA-BA-A4IH,9,9,+,+,102691125,102606931,102711277,102601063,CDS,CDS,IF,14,6,2,Y,N
MYO10,nc_chr5,HNSC,TCGA-BA-5149,5,5,-,-,16818118,14469179,16798743,14470726,CDS,NA,NA,21,29,10,Y,N
RARA,nc_chr18,HNSC,TCGA-CN-4737,17,18,+,-,38465538,14825254,38472235,14837599,UTR,NA,NA,16,13,15,Y,N
FILIP1L,IMPG2,HNSC,TCGA-HD-7753,3,3,-,-,99594916,100988417,99585518,100989749,UTR,CDS,NA,27,89,41,Y,N
DHX15,RBPJ,HNSC,TCGA-CV-7090,4,4,-,+,24550478,26387975,24549182,26376978,CDS,CDS,OOF,13,106,62,Y,N
PFN1,nc_chr17,HNSC,TCGA-BA-6872,17,17,-,+,4851558,4868834,4850922,4863834,CDS,NA,NA,5,17,5,Y,N
ARNTL,TEAD1,HNSC,TCGA-CV-6961,11,11,+,+,13299470,12883797,13301226,12798532,UTR,CDS,NA,8,10,2,Y,N
MKL1,ST13,HNSC,TCGA-HD-7753,22,22,-,-,40948110,41240913,40934896,41242810,UTR,CDS,NA,135,21,3,Y,N
GPATCH8,nc_chr6,HNSC,TCGA-CV-7434,17,6,-,-,42541840,109229129,42525311,109281214,CDS,NA,NA,14,4,1,Y,N
NINL,nc_chr20,HNSC,TCGA-DQ-7591,20,20,-,-,25484588,23159786,25482258,23165762,CDS,NA,NA,6,4,1,Y,N
nc_chr16,CSF1R,HNSC,TCGA-CR-6487,16,5,-,-,2204861,149466170,2204744,149481526,NA,UTR,NA,61,10,2,Y,N
SHANK3,nc_chr16,HNSC,TCGA-BB-4223,22,16,+,+,51144580,79639434,51151169,79636302,CDS,NA,NA,18,5,1,Y,N
LRP5,nc_chr5,HNSC,TCGA-CN-6011,11,5,+,-,68115711,46002665,68121993,46034188,CDS,NA,NA,14,48,24,Y,N
DYRK1A,RUNX1,HNSC,TCGA-CQ-7065,21,21,+,-,38868560,36265260,38868844,36325940,CDS,CDS,OOF,3,3,3,Y,N
UBR1,nc_chr8,KICH,TCGA-KL-8341,15,8,-,-,43398140,116050126,43390202,116053801,CDS,NA,NA,159,250,78,N,N
DACH1,nc_chr5,KICH,TCGA-KM-8443,13,5,-,+,72440054,64981796,72349154,64972198,CDS,NA,NA,33,20,4,N,N
GPD1L,nc_chr3,KICH,TCGA-KL-8341,3,3,+,+,32169745,47165786,32170906,47160381,CDS,NA,NA,17,24,9,N,N
MSH3,nc_chr5,KICH,TCGA-KL-8323,5,5,+,+,79974912,82985824,79979237,82985633,CDS,NA,NA,15,98,43,N,N
MAP3K1,nc_chr5,KICH,TCGA-KL-8323,5,5,+,-,56171137,12808908,56173844,12809804,CDS,NA,NA,8,104,37,Y,N
DROSHA,nc_chr5,KICH,TCGA-KL-8323,5,5,-,+,31521230,33510234,31520449,33498296,CDS,NA,NA,7,107,24,Y,N
CSNK1G1,AP4E1,KICH,TCGA-KL-8341,15,15,-,+,64648187,51260460,64639923,51260242,UTR,CDS,NA,10,61,16,N,N
FOXO1,PDGFRB,KICH,TCGA-KM-8443,13,5,-,-,41239720,149499686,41238742,149499811,CDS,CDS,IF,10,14,1,N,N
ZMYM5,nc_chr13,KICH,TCGA-KM-8443,13,13,-,-,20425495,35878105,20416020,35891737,CDS,NA,NA,3,17,11,N,N
ST7,CAPZA2,KICH,TCGA-KL-8341,7,7,+,+,116593745,116556114,116607062,116555645,CDS,CDS,OOF,564,76,21,N,N
EIF3E,nc_chr8,KICH,TCGA-KL-8341,8,8,-,+,109226836,103089536,109220302,103085133,CDS,NA,NA,353,48,15,Y,N
CAPZA2,nc_chr7,KIRC,TCGA-A3-3363,7,7,+,-,116502704,141755300,116515184,141763723,CDS,NA,NA,40,39,15,Y,N
HIPK2,nc_chr7,KIRC,TCGA-A3-3363,7,7,-,+,139415731,91503676,139321964,91489954,CDS,NA,NA,54,30,10,N,N
SYNRG,nc_chr17,KIRC,TCGA-CJ-5681,17,17,-,+,35896081,36325777,35895908,36309971,CDS,NA,NA,44,13,6,N,N
WDR60,VIPR2,KIRC,TCGA-A3-3363,7,7,+,-,158684024,158851269,158695080,158884783,CDS,CDS,IF,18,27,6,Y,N
RBM33,nc_chr7,KIRC,TCGA-A3-3363,7,7,+,+,155499762,151288949,155501076,151287569,CDS,NA,NA,21,40,7,Y,N
ACTR3C,nc_chr7,KIRC,TCGA-A3-3363,7,7,-,-,149981842,101337934,149967445,101373510,CDS,NA,NA,10,18,13,Y,N
AGAP3,MKLN1,KIRC,TCGA-A3-3363,7,7,+,+,150784159,131071879,150787872,131060802,CDS,CDS,OOF,5,4,6,N,N
FAM172A,FHIT,KIRC,TCGA-B2-4101,5,3,-,-,93294482,59738047,93232866,59755559,CDS,CDS,IF,44,18,4,N,N
nc_chrX,DCX,KIRC,TCGA-CJ-5681,X,X,-,-,93855106,110576381,93847225,110582523,NA,CDS,NA,400,57,25,Y,N
nc_chr21,TENM1,KIRC,TCGA-CJ-5681,21,X,+,-,30566581,123775841,30570623,123777990,NA,CDS,NA,38,2,14,Y,N
GABRA3,DIAPH2,KIRC,TCGA-CJ-5681,X,X,-,+,151376473,96603080,151368632,96532195,CDS,NA,NA,33,29,10,Y,N
CPSF6,PTPRB,LGG,TCGA-CS-4941,12,12,+,-,69633486,70975082,69638255,70978749,CDS,CDS,OOF,3571,221,38,N,N
QRSL1,nc_chr6,LGG,TCGA-DU-7010,6,6,+,+,107077580,105926570,107081477,105905042,CDS,NA,NA,802,115,7,N,N
ZCCHC8,RSRC2,LGG,TCGA-HW-7487,12,12,-,-,122983374,122990253,122982885,122991189,CDS,CDS,OOF,251,17,1,N,N
ZNF175,CYP27B1,LGG,TCGA-DU-7010,19,12,+,-,52085135,58158333,52087070,58158569,CDS,CDS,OOF,222,223,31,N,N
TMTC1,CASC1,LGG,TCGA-DU-7007,12,12,-,-,29664976,25264873,29661465,25267231,CDS,CDS,IF,44,4,1,N,N
NME7,nc_chr1,LGG,TCGA-HT-7468,1,1,-,-,169199956,169345957,169190370,169346311,CDS,NA,NA,27,3,1,Y,N
PHB2,nc_chr12,LGG,TCGA-DU-7007,12,12,-,-,7078661,10378925,7077794,10379597,CDS,NA,NA,19,2,1,Y,N
NFASC,PPP1R12B,LGG,TCGA-FG-6688,1,1,+,+,204957934,202531906,204957990,202531835,CDS,CDS,OOF,24,24,3,N,N
FAM208B,nc_chr10,LGG,TCGA-DU-7292,10,10,+,+,5727138,36719956,5760435,36651783,UTR,NA,NA,15,7,1,Y,N
WNK1,STK38L,LGG,TCGA-DU-7007,12,12,+,+,863490,27455070,920398,27451708,CDS,CDS,OOF,12,3,1,Y,N
DIP2B,RTTN,LGG,TCGA-IK-7675,12,18,+,-,51102345,67795782,51104750,67796061,CDS,CDS,OOF,12,35,17,N,N
DNAJC1,nc_chr10,LGG,TCGA-DU-5847,10,10,-,+,22292142,16870814,22261259,16860478,CDS,NA,NA,9,7,3,N,N
C12orf39,LPCAT3,LGG,TCGA-DU-7007,12,12,+,-,21682018,7092700,21682036,7102159,CDS,CDS,IF,3,2,1,Y,N
SUOX,nc_chr12,LGG,TCGA-IK-7675,12,12,+,+,56391507,54667397,56395136,54633142,UTR,NA,NA,4,23,6,N,N
SPTAN1,nc_chr9,LGG,TCGA-CS-5395,9,1,+,-,131349977,204045412,131351076,204045423,CDS,NA,NA,22,4,2,N,N
F11R,nc_chr1,LUAD,TCGA-38-4630,1,1,-,-,160969936,202057092,160969702,202064540,CDS,NA,NA,1627,13,7,Y,N
MAL2,ARFGEF1,LUAD,TCGA-05-4422,8,8,+,-,120220844,68130373,120224177,68131122,CDS,CDS,OOF,233,4,8,N,N
EZR,ROS1,LUAD,TCGA-55-6986,6,6,-,-,159191796,117645578,159191786,117645835,CDS,CDS,IF,198,3,5,N,N
YTHDF3,nc_chr8,LUAD,TCGA-97-8171,8,8,+,-,64087975,132162866,64088436,132164219,CDS,NA,NA,163,17,14,N,N
GPR116,MEP1A,LUAD,TCGA-91-6840,6,6,-,+,46832779,46802315,46830945,46801720,CDS,CDS,IF,138,7,2,N,N
RCCD1,BLM,LUAD,TCGA-38-4630,15,15,+,+,91498178,91326052,91502667,91317645,UTR,CDS,NA,45,89,22,Y,N
TADA1,CADM3,LUAD,TCGA-05-4432,1,1,-,+,166838682,159169541,166833181,159169418,CDS,CDS,IF,136,12,6,N,N
PPP2R2A,nc_chr8,LUAD,TCGA-97-8171,8,8,+,+,26151256,64810604,26185165,64801447,CDS,NA,NA,108,28,13,N,N
UBAC2,nc_chr13,LUAD,TCGA-38-4630,13,13,+,+,99966474,99623152,99969161,99619130,CDS,NA,NA,115,18,10,N,N
HECTD1,nc_chr14,LUAD,TCGA-38-4630,14,14,-,-,31626046,33356498,31620647,33388494,CDS,NA,NA,105,24,14,N,N
REL,MVP,LUAD,TCGA-49-6743,2,16,+,+,61144152,29847025,61144677,29845382,CDS,CDS,IF,103,4,1,N,N
TIPRL,nc_chr1,LUAD,TCGA-78-7146,1,1,+,-,168160738,168251554,168162969,168260726,CDS,NA,NA,55,28,14,Y,N
PHKG2,nc_chr16,LUAD,TCGA-05-4398,16,16,+,-,30760236,23990626,30760877,23990841,CDS,NA,NA,99,5,1,N,N
ASXL1,nc_chr20,LUAD,TCGA-05-4405,20,20,+,+,30956926,38748530,30957296,38741492,CDS,NA,NA,68,17,6,Y,N
SCUBE2,nc_chr11,LUAD,TCGA-75-5147,11,11,-,+,9111254,16068784,9105063,16064635,CDS,NA,NA,33,19,8,Y,N
PACSIN2,TTLL1,LUAD,TCGA-50-6597,22,22,-,-,43308027,43435911,43307384,43437381,CDS,CDS,OOF,88,9,2,N,N
NRP1,nc_chr10,LUAD,TCGA-55-6543,10,10,-,+,33502314,88225722,33500869,88212381,CDS,NA,NA,41,3,2,Y,N
TOX,nc_chrX,LUAD,TCGA-50-6597,8,X,-,-,59851861,24218956,59838285,24244103,CDS,NA,NA,75,55,19,N,N
FRYL,OCIAD2,LUAD,TCGA-64-5774,4,4,-,-,48712536,48896070,48710745,48899222,UTR,CDS,NA,83,10,1,N,N
PLEKHA2,nc_chr8,LUAD,TCGA-50-5933,8,8,+,-,38775588,38811387,38804241,38834099,CDS,NA,NA,60,16,4,Y,N
LMAN2,F12,LUAD,TCGA-55-8299,5,5,-,-,176761285,176831091,176760137,176831215,CDS,CDS,IF,73,4,1,N,N
BCAP31,PDZD4,LUAD,TCGA-38-4630,X,X,-,-,152986327,153074050,152981498,153077559,CDS,CDS,OOF,72,13,7,N,N
AATF,nc_chr20,LUAD,TCGA-78-7146,17,20,+,-,35348156,10085042,35352280,10145392,CDS,NA,NA,71,8,4,N,N
MED13,DDX42,LUAD,TCGA-78-7146,17,17,-,+,60129898,61886180,60113681,61886141,CDS,CDS,OOF,69,31,23,N,N
ZHX1,RALYL,LUAD,TCGA-05-4422,8,8,-,+,124286457,85686814,124283471,85513759,UTR,CDS,NA,67,4,9,N,N
STAT4,ACKR3,LUAD,TCGA-05-4398,2,2,-,+,192011339,237489083,192001280,237479459,CDS,UTR,NA,65,6,12,N,N
HOOK3,nc_chr8,LUAD,TCGA-73-4659,8,8,+,+,42837839,97231412,42838008,97229741,CDS,NA,NA,59,23,5,N,N
DCP1A,nc_chr8,LUAD,TCGA-73-4659,3,8,-,+,53376171,12675472,53362803,12617441,CDS,NA,NA,43,8,6,Y,N
TFAP2C,nc_chr20,LUAD,TCGA-67-6215,20,20,+,-,55211810,61165975,55212850,61168095,CDS,NA,NA,62,26,7,N,N
SUV420H1,MTL5,LUAD,TCGA-38-4630,11,11,-,-,67980944,68480875,67977967,68480892,NA,CDS,NA,32,28,11,Y,N
TGFBRAP1,FHL2,LUAD,TCGA-38-4630,2,2,-,-,105912813,106002997,105908466,106009675,CDS,UTR,NA,55,23,5,N,N
ATXN1,nc_chr6,LUAD,TCGA-67-6215,6,6,-,+,16753464,31196383,16736295,31194982,UTR,NA,NA,36,25,6,Y,N
SAMD12,nc_chr8,LUAD,TCGA-97-8171,8,8,-,+,119391799,119078450,119301605,119069578,CDS,NA,NA,36,38,10,Y,N
WBP1L,SUFU,LUAD,TCGA-38-4630,10,10,+,+,104536174,104352339,104545592,104334031,CDS,CDS,OOF,33,51,24,Y,N
RAI14,ASB4,LUAD,TCGA-75-5147,5,7,+,+,34687060,95157125,34721551,95145714,CDS,CDS,OOF,51,5,5,N,N
RRM2B,nc_chr8,LUAD,TCGA-05-4422,8,8,-,+,103231042,66438229,103228363,66411222,CDS,NA,NA,32,7,4,Y,N
ZC3H12A,nc_chr1,LUAD,TCGA-38-4628,1,1,+,-,37941540,44884297,37945226,44923115,CDS,NA,NA,30,17,16,Y,N
MUT,SUPT3H,LUAD,TCGA-05-4420,6,6,-,-,49430816,44988369,49427315,45065937,UTR,CDS,NA,24,4,2,Y,N
OSBPL9,nc_chr1,LUAD,TCGA-67-3772,1,1,+,-,52135184,60254854,52171460,60281023,CDS,NA,NA,21,9,3,Y,N
ZNF260,SCGB2B2,LUAD,TCGA-05-4389,19,19,-,-,37016057,35084504,37015890,35084664,UTR,CDS,NA,34,15,8,Y,N
TOP3A,MYO18A,LUAD,TCGA-38-4630,17,17,-,-,18202873,27430682,18200121,27433110,CDS,CDS,IF,44,10,6,N,N
PUM1,NKAIN1,LUAD,TCGA-38-4631,1,1,-,-,31532051,31661034,31520750,31684775,CDS,CDS,IF,43,2,1,N,N
VANGL2,PDE4DIP,LUAD,TCGA-78-7146,1,1,+,-,160370659,145021167,160382505,145024714,UTR,CDS,NA,39,41,7,N,N
KIF13B,nc_chr8,LUAD,TCGA-05-4420,8,8,-,-,29102863,29150224,29083329,29167375,CDS,NA,NA,31,7,6,Y,N
TAF3,DNAJC1,LUAD,TCGA-05-4420,10,10,+,-,7860838,22095028,7862189,22125388,CDS,CDS,OOF,36,9,7,N,N
NSUN3,nc_chr3,LUAD,TCGA-67-3771,3,3,+,-,93813998,109135743,93844316,109171189,CDS,NA,NA,25,7,2,Y,N
NCOA3,SGK2,LUAD,TCGA-75-5146,20,20,+,+,46212005,42195113,46220173,42193153,UTR,UTR,NA,39,9,1,N,N
DNAH5,nc_chr5,LUAD,TCGA-05-4396,5,5,-,-,13928203,7982046,13926025,7993697,CDS,NA,NA,38,13,1,N,N
ZNF606,nc_chr8,LUAD,TCGA-78-7143,19,8,-,+,58499575,75344836,58497454,75340761,CDS,NA,NA,21,6,5,Y,N
CHORDC1,nc_chr11,LUAD,TCGA-38-4632,11,11,-,-,89947186,121440947,89945564,121465143,CDS,NA,NA,33,8,2,N,N
ADAMTS9,ULK4,LUAD,TCGA-38-4630,3,3,-,-,64635313,41900886,64633648,41908234,CDS,NA,NA,23,58,18,Y,N
FOCAD,nc_chr9,LUAD,TCGA-38-4628,9,9,+,+,20658825,27458254,20703799,27454373,UTR,NA,NA,35,15,7,N,N
WIBG,nc_chr12,LUAD,TCGA-55-6984,12,12,-,+,56321509,38396687,56319747,38396635,CDS,NA,NA,20,14,7,Y,N
ZNF34,nc_chr8,LUAD,TCGA-05-4422,8,8,-,-,146002843,144126776,146001436,144130396,CDS,NA,NA,29,85,8,N,N
RFT1,nc_chr3,LUAD,TCGA-38-4630,3,3,-,-,53137969,53226956,53134392,53228166,CDS,NA,NA,31,30,14,N,N
SENP1,nc_chr12,LUAD,TCGA-50-5051,12,12,-,-,48490126,52617296,48485697,52627647,CDS,NA,NA,22,18,2,Y,N
EML4,ALK,LUAD,TCGA-67-6215,2,2,+,-,42491871,29446394,42491896,29447039,CDS,CDS,IF,31,11,10,N,N
UBA6,nc_chr4,LUAD,TCGA-50-6597,4,4,-,+,68547281,69045030,68545470,69041724,CDS,NA,NA,29,24,13,N,N
RRBP1,TASP1,LUAD,TCGA-91-6831,20,20,-,-,17614105,13398168,17611413,13412188,CDS,CDS,OOF,29,9,2,N,N
TFCP2,BIN2,LUAD,TCGA-38-4630,12,12,-,-,51488843,51696925,51488322,51699624,NA,CDS,NA,15,24,2,Y,N
MTPAP,nc_chr10,LUAD,TCGA-55-1596,10,10,-,+,30615353,30333871,30612407,30331775,CDS,NA,NA,19,17,1,Y,N
KANSL2,nc_chr12,LUAD,TCGA-49-6745,12,12,-,+,49072819,26519354,49068516,26512709,CDS,NA,NA,10,5,1,Y,N
CDH17,nc_chr13,LUAD,TCGA-05-4422,8,13,-,+,95220711,19412201,95207880,19400804,UTR,NA,NA,22,6,3,N,N
PRKCI,nc_chr3,LUAD,TCGA-38-4630,3,3,+,+,169953139,168671505,169968982,168655876,CDS,NA,NA,11,11,9,Y,N
nc_chr8,HTRA4,LUAD,TCGA-50-5933,8,8,-,+,38811261,38835472,38804241,38834099,NA,CDS,NA,18,16,4,N,N
EPB41L4A,PLAC8L1,LUAD,TCGA-55-6543,5,5,-,-,111754638,145477855,111680830,145478272,CDS,CDS,OOF,18,6,1,N,N
SNAPC3,nc_chr9,LUAD,TCGA-55-6982,9,9,+,+,15433634,22210663,15437824,22132613,CDS,NA,NA,17,3,1,N,N
C15orf57,CBX3,LUAD,TCGA-05-4403,15,7,-,+,40854971,26241389,40854180,26241365,CDS,NA,NA,12,7,1,Y,N
TDP1,nc_chr14,LUAD,TCGA-73-4668,14,14,+,-,90423144,21604049,90426707,21605510,UTR,NA,NA,11,5,2,Y,N
LRRC45,GNB1,LUAD,TCGA-44-6778,17,1,+,-,79987061,1749314,79987651,1751643,CDS,CDS,IF,14,13,2,N,N
ASAP1,nc_chr8,LUAD,TCGA-05-4422,8,8,-,+,131199482,120865255,131197245,120860741,CDS,NA,NA,13,38,18,N,N
KDM6A,ZNF674,LUAD,TCGA-71-6725,X,X,+,-,44733233,46360770,44808190,46370722,CDS,CDS,OOF,12,9,1,N,N
FBF1,HELZ,LUAD,TCGA-78-7146,17,17,-,-,73933647,65134230,73932743,65137402,CDS,CDS,OOF,12,39,11,N,N
ZBTB46,nc_chr6,LUAD,TCGA-71-6725,20,6,-,+,62421174,56179941,62409123,56176406,CDS,NA,NA,7,4,1,Y,N
MTM1,VBP1,LUAD,TCGA-55-6712,X,X,+,+,149787612,154448460,149792773,154447515,CDS,CDS,IF,10,4,1,N,N
EML4,ALK,LUAD,TCGA-67-6216,2,2,+,-,42492091,29446394,42507910,29446551,NA,CDS,NA,6,3,1,Y,N
EXT1,OC90,LUAD,TCGA-05-4422,8,8,-,-,118830674,133045411,118828335,133045574,CDS,CDS,OOF,8,92,34,N,N
VASP,nc_chr19,LUAD,TCGA-05-4422,19,19,+,+,46011034,54605992,46013351,54605898,CDS,NA,NA,8,17,10,N,N
SLBP,TACC3,LUAD,TCGA-38-4630,4,4,-,+,1713601,1732614,1712766,1729660,CDS,CDS,IF,8,36,1,N,N
ZNF419,nc_chr19,LUAD,TCGA-78-7146,19,19,+,+,58002965,57988849,58003157,57988485,CDS,NA,NA,8,14,4,N,N
AGO2,nc_chr8,LUAD,TCGA-38-6178,8,8,-,-,141569494,145609629,141569114,145612138,CDS,NA,NA,4,10,1,Y,N
nc_chr18,MYOM1,LUAD,TCGA-55-6972,18,18,-,-,3013085,3116513,3001071,3118308,NA,CDS,NA,7,4,1,N,N
DROSHA,nc_chr5,LUAD,TCGA-55-6982,5,5,-,+,31508728,30913419,31507769,30912771,CDS,NA,NA,7,18,8,N,N
HELZ,nc_chr17,LUAD,TCGA-91-6847,17,17,-,+,65162594,78502284,65157417,78501498,CDS,NA,NA,7,11,12,N,N
RFTN1,DAZL,LUAD,TCGA-55-6972,3,3,-,-,16450882,16640105,16437152,16646767,CDS,CDS,IF,6,2,3,N,N
SCN4A,TRIM47,LUAD,TCGA-78-7146,17,17,-,-,62034522,73872573,62030561,73872798,CDS,CDS,IF,5,28,14,N,N
HINT3,NCOA7,LUAD,TCGA-91-6836,6,6,+,+,126278324,126176166,126284139,126137644,CDS,CDS,OOF,5,5,1,N,N
SCGB2B2,ZNF599,LUAD,TCGA-38-4630,19,19,-,-,35166535,35260460,35143724,35261106,NA,CDS,NA,4,12,3,N,N
CDK8,nc_chr13,LUAD,TCGA-64-1678,13,13,+,-,26970491,32465211,26971282,32503365,CDS,NA,NA,4,12,8,N,N
DIDO1,nc_chr20,LUAD,TCGA-91-6831,20,20,-,-,61569148,62732808,61568220,62734529,UTR,NA,NA,4,3,1,N,N
CPVL,nc_chr7,LUAD,TCGA-91-6847,7,7,-,-,29152320,28650877,29142343,28656697,CDS,NA,NA,4,3,3,N,N
OSBP2,SFI1,LUAD,TCGA-91-6847,22,22,+,+,31091540,31942847,31124421,31942090,CDS,CDS,IF,4,14,8,N,N
COG5,CBLL1,LUAD,TCGA-38-4631,7,7,-,+,107052947,107398588,107052350,107398323,CDS,CDS,OOF,3,2,3,N,N
TOB1,TTLL6,LUAD,TCGA-50-5930,17,17,-,-,48943419,46882353,48942233,46885034,UTR,CDS,NA,3,5,4,N,N
TCF7L1,DNAH6,LUAD,TCGA-55-6972,2,2,+,+,85361573,84989879,85507514,84962198,CDS,CDS,IF,3,2,2,N,N
MAP3K9,nc_chr14,LUAD,TCGA-67-3771,14,14,-,-,71267384,72056008,71259810,72063824,CDS,NA,NA,3,30,2,N,N
SPON1,nc_chr11,LUAD,TCGA-38-4630,11,11,+,+,14157114,13802806,14209113,13766099,CDS,NA,NA,123,26,10,Y,N
SLC45A4,MROH5,LUAD,TCGA-38-4630,8,8,-,-,142264088,142500376,142252953,142503256,NA,CDS,NA,17,108,26,Y,N
ZMYND8,nc_chr20,LUAD,TCGA-38-4630,20,20,-,-,45976600,46026089,45920867,46046387,CDS,NA,NA,30,50,17,Y,N
SPEN,CERS4,LUAD,TCGA-38-4630,1,19,+,+,16174645,8315960,16175168,8309960,CDS,UTR,NA,62,9,4,Y,N
STARD3,GSDMB,LUAD,TCGA-38-4630,17,17,+,-,37793484,38061217,37806407,38061587,UTR,CDS,NA,107,31,6,N,N
ST8SIA4,nc_chr5,LUAD,TCGA-38-6178,5,5,-,-,100222047,100250492,100200352,100251370,CDS,NA,NA,27,2,1,N,N
SYMPK,nc_chr5,LUAD,TCGA-49-4488,19,5,-,+,46357433,100573412,46357110,100572969,CDS,NA,NA,38,4,1,Y,N
CAND1,RAP1B,LUAD,TCGA-91-6831,12,12,+,+,67701272,69042479,67701866,69035305,CDS,UTR,NA,19,32,7,Y,N
GALNT11,nc_chr7,LUAD,TCGA-44-2659,7,7,+,+,151722969,151364797,151757336,151363350,UTR,NA,NA,5,27,10,Y,N
ATP2B4,ERBB4,LUAD,TCGA-05-4398,1,2,+,-,203596347,212989628,203612782,213156038,UTR,CDS,NA,21,13,8,Y,N
ZSWIM4,CCDC130,LUAD,TCGA-38-4630,19,19,+,+,13934314,13862422,13936144,13860806,CDS,UTR,NA,34,15,4,Y,N
RNF121,nc_chr11,LUAD,TCGA-38-4632,11,11,+,+,71640170,79284307,71643945,79213396,CDS,NA,NA,27,2,1,Y,N
EIF3L,ORAOV1,LUAD,TCGA-64-1678,22,11,+,-,38274178,69476370,38278926,69478468,CDS,NA,NA,39,50,16,Y,N
CD74,ROS1,LUAD,TCGA-64-1680,5,6,-,-,149784243,117645578,149782879,117645664,CDS,CDS,IF,210,3,10,Y,N
NDRG1,SNTB1,LUAD,TCGA-05-4422,8,8,-,-,134292475,121706148,134281878,121798330,CDS,CDS,OOF,85,53,26,Y,N
PTGR1,nc_chr9,LUSC,TCGA-18-3415,9,9,-,-,114337014,114389728,114334229,114392171,CDS,NA,NA,453,15,6,N,N
PPT1,nc_chr1,LUSC,TCGA-60-2713,1,1,-,-,40542514,40894735,40541062,40895821,CDS,NA,NA,230,67,44,Y,N
NTRK2,nc_chr9,LUSC,TCGA-22-5485,9,9,+,+,87367000,86918683,87395938,86918655,CDS,NA,NA,230,38,11,Y,N
HOOK2,RTBDN,LUSC,TCGA-18-3415,19,19,-,-,12885483,12937685,12884812,12939273,CDS,CDS,OOF,314,20,8,N,N
MYBBP1A,ANKFY1,LUSC,TCGA-22-5477,17,17,-,-,4457105,4067467,4456100,4069458,CDS,NA,NA,267,13,11,N,N
SCRN1,nc_chr7,LUSC,TCGA-43-5670,7,7,-,-,29976172,30283589,29967941,30284191,CDS,NA,NA,259,10,3,N,N
nc_chr22,PI4KA,LUSC,TCGA-66-2793,22,22,+,-,20855123,21104282,20942824,21116111,NA,CDS,NA,113,891,230,Y,N
KIAA0100,ALKBH5,LUSC,TCGA-60-2722,17,17,-,+,26970628,18110129,26969933,18108890,CDS,CDS,IF,50,9,2,Y,N
PHGDH,HMGCS2,LUSC,TCGA-85-8277,1,1,+,-,120283141,120295297,120283963,120295344,CDS,CDS,IF,111,13,10,N,N
PQBP1,ERAS,LUSC,TCGA-66-2793,X,X,+,+,48755297,48687491,48755518,48687427,UTR,NA,NA,65,30,8,Y,N
CLPB,nc_chr11,LUSC,TCGA-37-4135,11,11,-,+,72091325,81159927,72091184,81121140,CDS,NA,NA,76,147,48,N,N
GIGYF1,nc_chr12,LUSC,TCGA-85-8277,7,12,-,-,100279695,46088995,100279438,46090453,CDS,NA,NA,53,16,14,Y,N
AGO2,PTK2,LUSC,TCGA-60-2713,8,8,-,-,141645584,141685598,141629643,141687033,CDS,CDS,OOF,78,7,2,N,N
OSCP1,nc_chr3,LUSC,TCGA-60-2713,1,3,-,+,36898023,181432973,36897839,181422768,CDS,NA,NA,45,190,91,Y,N
SEMA4B,nc_chr15,LUSC,TCGA-18-3415,15,15,+,+,90728313,90671656,90737621,90660315,UTR,NA,NA,61,15,3,N,N
FBXO9,nc_chr6,LUSC,TCGA-60-2719,6,6,+,+,52930590,52677508,52933819,52668326,CDS,NA,NA,57,28,10,Y,N
SGMS1,nc_chr4,LUSC,TCGA-60-2713,10,4,-,+,52193236,43969464,52192731,43968915,UTR,NA,NA,61,21,6,N,N
SH3PXD2A,OBFC1,LUSC,TCGA-18-3415,10,10,-,-,105614953,105670380,105608731,105675123,CDS,CDS,OOF,55,13,5,N,N
TPD52L1,RNF217,LUSC,TCGA-68-7755,6,6,+,+,125475116,125379088,125482582,125376053,CDS,CDS,OOF,64,29,17,N,N
LIFR,BCAS3,LUSC,TCGA-68-8250,5,17,-,+,38496484,59445688,38491787,59201182,CDS,CDS,IF,64,2,4,N,N
MARK3,TDRD9,LUSC,TCGA-77-7139,14,14,+,+,103958371,104506533,103963497,104503256,CDS,CDS,IF,61,15,16,N,N
PTRH2,RNFT1,LUSC,TCGA-33-4586,17,17,-,-,57784732,58035805,57780756,58037805,UTR,CDS,NA,60,6,3,N,N
CDKN2A,nc_chr9,LUSC,TCGA-21-1078,9,9,-,-,21974677,20848622,21972268,20863779,CDS,NA,NA,44,27,16,Y,N
LATS1,LACE1,LUSC,TCGA-66-2759,6,6,-,+,150038985,108723200,150029808,108693910,UTR,CDS,NA,34,15,16,Y,N
PDE3B,nc_chr3,LUSC,TCGA-56-1622,11,3,+,+,14825596,182018732,14835445,182009696,CDS,NA,NA,33,129,72,Y,N
RNGTT,nc_chr6,LUSC,TCGA-66-2759,6,6,-,-,89650790,161394716,89640195,161403920,CDS,NA,NA,37,25,7,Y,N
POLH,nc_chr6,LUSC,TCGA-43-5670,6,6,+,+,43573056,43330781,43576019,43329907,CDS,NA,NA,19,48,22,Y,N
MRPL48,GDPD5,LUSC,TCGA-37-4135,11,11,+,-,73519395,75155540,73525019,75156261,CDS,CDS,OOF,49,8,5,N,N
ADAM9,RNF170,LUSC,TCGA-21-1076,8,8,+,-,38865502,42716998,38867454,42720352,CDS,CDS,IF,44,24,3,N,N
GPBP1L1,nc_chr1,LUSC,TCGA-21-5782,1,1,-,-,46151248,41395719,46149400,41440048,UTR,NA,NA,37,13,2,N,N
ZNF532,MALT1,LUSC,TCGA-43-5670,18,18,+,+,56621031,56400629,56642631,56395372,CDS,CDS,OOF,42,11,4,N,N
ADD1,FAM193A,LUSC,TCGA-37-4135,4,4,+,+,2845751,2733502,2855417,2720902,UTR,CDS,NA,38,23,3,N,N
EMP1,nc_chr12,LUSC,TCGA-37-4135,12,12,+,-,13366755,11839294,13367221,11841481,CDS,NA,NA,37,2,5,N,N
RB1,CNIH3,LUSC,TCGA-60-2695,13,1,+,+,48881542,224868660,48899458,224838007,CDS,CDS,IF,36,35,5,N,N
ATP2C1,COL6A6,LUSC,TCGA-52-7812,3,3,+,+,130649370,130394046,130649439,130393306,CDS,CDS,OOF,35,16,8,N,N
ACTR2,TSGA10,LUSC,TCGA-22-5492,2,2,+,-,65455091,99722160,65460340,99723417,CDS,CDS,IF,34,11,4,N,N
CDC45,nc_chr18,LUSC,TCGA-66-2766,22,18,+,+,19486674,38315558,19487623,38311809,CDS,NA,NA,14,13,4,Y,N
NF1,nc_chr17,LUSC,TCGA-22-5485,17,17,+,-,29422387,20185723,29458143,20207880,CDS,NA,NA,25,63,25,N,N
PPIL2,nc_chr18,LUSC,TCGA-66-2766,22,18,+,-,22026670,38292180,22028259,38299281,CDS,NA,NA,20,50,21,Y,N
RICTOR,nc_chr5,LUSC,TCGA-66-2766,5,5,-,-,38975639,44071393,38975065,44073383,CDS,NA,NA,20,10,2,Y,N
C1orf159,nc_chr1,LUSC,TCGA-66-2759,1,1,-,-,1025733,1186680,1024827,1187541,CDS,NA,NA,28,13,8,N,N
FAT1,nc_chr4,LUSC,TCGA-43-3920,4,4,-,-,187627717,187301576,187606861,187382106,CDS,NA,NA,21,23,9,Y,N
OPA1,PPP2R3A,LUSC,TCGA-94-7943,3,3,+,+,193385069,135863885,193401120,135827797,CDS,CDS,OOF,26,25,10,N,N
DENND4A,nc_chr19,LUSC,TCGA-21-1082,15,19,-,+,66031044,59044683,66030365,59039459,CDS,NA,NA,25,20,9,N,N
nc_chr13,TMEM255B,LUSC,TCGA-34-2600,13,13,+,+,114537737,114514709,114538309,114511876,NA,CDS,NA,25,19,13,N,N
CENPQ,nc_chr6,LUSC,TCGA-37-4135,6,6,+,-,49440571,67786933,49448560,67808474,CDS,NA,NA,25,5,7,N,N
UNK,DPYD,LUSC,TCGA-43-3920,17,1,+,-,73781065,98039526,73792869,98059540,CDS,CDS,OOF,19,38,24,Y,N
PRRG4,nc_chr11,LUSC,TCGA-18-3415,11,11,+,+,32861785,32803019,32870334,32801266,CDS,NA,NA,22,8,3,N,N
NARG2,nc_chr12,LUSC,TCGA-43-3394,15,12,-,-,60758793,42348565,60752298,42356827,CDS,NA,NA,22,6,3,N,N
C6orf62,FAM65B,LUSC,TCGA-18-3415,6,6,-,-,24716376,24818853,24715836,24822018,CDS,CDS,IF,21,14,7,N,N
SEMA4C,FAM178B,LUSC,TCGA-66-2793,2,2,-,-,97527316,97568444,97526589,97570188,CDS,CDS,OOF,21,28,19,N,N
MXRA8,CDK11A,LUSC,TCGA-43-5670,1,1,-,-,1293836,1654270,1292896,1655672,CDS,UTR,NA,20,26,6,N,N
OSBPL6,nc_chr2,LUSC,TCGA-43-3394,2,2,+,+,179059401,178161090,179148600,178133244,UTR,NA,NA,14,7,3,Y,N
nc_chr16,NOMO1,LUSC,TCGA-66-2757,16,16,-,+,15032024,14988855,15031371,14988610,NA,CDS,NA,18,16,1,N,N
CDC25A,SPINK8,LUSC,TCGA-66-2756,3,3,-,-,48205797,48351436,48201370,48358884,CDS,CDS,IF,17,7,1,N,N
nc_chr4,LETM1,LUSC,TCGA-66-2793,4,4,-,-,1769569,1821199,1765551,1823190,NA,CDS,NA,10,37,8,Y,N
USP37,nc_chr5,LUSC,TCGA-22-1016,2,5,-,+,219344373,38680426,219344181,38679061,CDS,NA,NA,17,15,7,N,N
TARBP1,nc_chr1,LUSC,TCGA-43-5670,1,1,-,-,234586174,235260749,234584584,235261357,CDS,NA,NA,12,23,11,Y,N
GPC1,ANKFN1,LUSC,TCGA-66-2789,2,17,+,+,241375501,54428127,241391362,54425943,CDS,CDS,OOF,16,13,16,N,N
SMAD2,CD226,LUSC,TCGA-21-1083,18,18,-,-,45456732,67563281,45445027,67621504,UTR,CDS,NA,9,6,8,Y,N
KNTC1,nc_chr12,LUSC,TCGA-37-4135,12,12,+,+,123028181,122753413,123028576,122752441,CDS,NA,NA,12,7,5,N,N
MAPKAPK3,nc_chr3,LUSC,TCGA-60-2698,3,3,+,+,50655215,50644091,50659460,50622945,CDS,NA,NA,12,10,4,N,N
HNMT,nc_chr2,LUSC,TCGA-85-8277,2,2,+,+,138727787,138707218,138742735,138648874,CDS,NA,NA,5,20,4,Y,N
ABCA4,nc_chr1,LUSC,TCGA-66-2766,1,1,-,+,94473190,94431664,94470998,94409498,CDS,NA,NA,7,19,5,Y,N
NPLOC4,nc_chr17,LUSC,TCGA-43-5670,17,17,-,-,79603942,79922816,79600273,79923704,CDS,NA,NA,7,14,10,Y,N
ITSN1,nc_chr1,LUSC,TCGA-60-2713,21,1,+,+,35107509,31000745,35117787,30998202,CDS,NA,NA,10,18,3,N,N
DNAJC9,nc_chr10,LUSC,TCGA-66-2756,10,10,-,+,75003601,74702325,74999543,74693238,CDS,NA,NA,10,14,6,N,N
JMJD1C,nc_chr10,LUSC,TCGA-85-8277,10,10,-,+,65140078,57387071,65072346,57373639,CDS,NA,NA,10,11,5,N,N
KDM4A,PTCH2,LUSC,TCGA-98-8022,1,1,+,-,44137546,45286376,44140922,45286935,CDS,CDS,OOF,10,17,3,N,N
GABRA2,nc_chr4,LUSC,TCGA-43-3920,4,4,-,+,46388091,73937430,46386206,73902885,CDS,NA,NA,9,29,13,N,N
CDCA7,nc_chr2,LUSC,TCGA-60-2698,2,2,+,+,174223565,174192083,174223635,174174820,CDS,NA,NA,9,3,5,N,N
ZNF684,nc_chr4,LUSC,TCGA-60-2711,1,4,+,-,40997459,191036814,40998206,191038158,UTR,NA,NA,6,3,116,Y,N
GLI3,nc_chr7,LUSC,TCGA-66-2759,7,7,-,-,42187825,41969587,42183892,41985024,CDS,NA,NA,9,28,11,N,N
PEX7,nc_chr6,LUSC,TCGA-66-2759,6,6,+,-,137219379,73380441,137230774,73386647,CDS,NA,NA,9,6,10,N,N
EXOC4,nc_chr7,LUSC,TCGA-34-2596,7,7,+,+,133164892,142457087,133237713,142442084,CDS,NA,NA,4,26,8,Y,N
ARL5B,NSUN6,LUSC,TCGA-92-8064,10,10,+,-,18957606,18840900,18961167,18855029,CDS,CDS,OOF,7,10,4,N,N
NFX1,ACO1,LUSC,TCGA-18-4721,9,9,+,+,33351788,32440463,33352620,32440132,CDS,CDS,IF,6,13,9,N,N
EEA1,nc_chr12,LUSC,TCGA-22-5477,12,12,-,-,93251051,75370458,93250165,75395247,CDS,NA,NA,6,6,1,N,N
HELQ,nc_chr4,LUSC,TCGA-56-1622,4,4,-,-,84361016,118043268,84359596,118043483,CDS,NA,NA,6,13,4,N,N
ANGPT1,nc_chr8,LUSC,TCGA-21-1083,8,8,-,-,108334124,108509734,108333220,108541532,CDS,NA,NA,5,3,1,N,N
GOLGA3,nc_chr3,LUSC,TCGA-22-5485,12,3,-,+,133374926,142275729,133374309,142275040,CDS,NA,NA,5,33,11,N,N
LETM2,nc_chr8,LUSC,TCGA-60-2724,8,8,+,+,38245548,36823222,38250096,36821694,UTR,NA,NA,5,138,50,N,N
ZMYND8,nc_chr20,LUSC,TCGA-33-4586,20,20,-,-,45927473,46040137,45924557,46041590,CDS,NA,NA,4,18,7,N,N
FHOD3,nc_chr18,LUSC,TCGA-43-5670,18,18,+,-,34238151,54388951,34256589,54466729,CDS,NA,NA,4,13,5,N,N
ARHGAP39,ZNF16,LUSC,TCGA-66-2756,8,8,-,-,145911071,146157976,145889315,146159243,NA,CDS,NA,4,5,1,N,N
COBLL1,SLC38A11,LUSC,TCGA-18-3415,2,2,-,-,165697666,165755240,165687245,165756366,CDS,CDS,OOF,3,7,6,N,N
TOP3A,nc_chr17,LUSC,TCGA-21-5782,17,17,-,-,18217913,18220474,18215502,18221633,CDS,NA,NA,3,47,31,N,N
SBF2,ZBED5,LUSC,TCGA-66-2744,11,11,-,-,10315562,10847291,10219835,10853667,CDS,NA,NA,3,14,10,N,N
ZNF302,nc_chr8,LUSC,TCGA-66-2759,19,8,+,+,35174143,34321421,35176537,34289624,CDS,NA,NA,3,6,7,N,N
CYTIP,MGAT5,LUSC,TCGA-66-2756,2,2,-,+,158343844,135027957,158337745,135017799,NA,CDS,NA,347,34,13,N,N
ATG4D,nc_chr19,LUSC,TCGA-66-2766,19,19,+,+,10655806,10624170,10655917,10614983,CDS,NA,NA,176,13,4,N,N
YAP1,nc_chr11,LUSC,TCGA-22-1016,11,11,+,-,102033302,102157320,102040470,102161875,CDS,NA,NA,21,103,20,N,N
MXRA8,nc_chr1,LUSC,TCGA-43-5670,1,1,-,-,1293836,1588948,1292896,1655672,CDS,NA,NA,115,40,6,N,N
TCTN3,nc_chr10,LUSC,TCGA-68-8250,10,10,-,+,97452677,96698194,97450940,96691147,CDS,NA,NA,15,18,18,N,N
KLHL22,nc_chr22,LUSC,TCGA-66-2793,22,22,-,+,20843272,20738278,20835640,20716945,CDS,NA,NA,31,437,3,Y,N
NOTCH2,SEC22B,LUSC,TCGA-85-8277,1,1,-,+,120539620,145115735,120536456,145112819,CDS,CDS,IF,25,15,2,Y,N
ARID1A,RPL4,LUSC,TCGA-77-7139,1,15,+,-,27059283,66792685,27074510,66792694,CDS,NA,NA,231,8,6,Y,N
PHGDH,nc_chr1,LUSC,TCGA-85-8277,1,1,+,-,120254783,144301536,120257575,144305612,CDS,NA,NA,128,28,21,Y,N
nc_chr3,NLGN1,LUSC,TCGA-77-6843,3,3,+,+,173115853,173993105,173143209,173565404,NA,CDS,NA,6,28,10,Y,N
RPL3,nc_chr22,PRAD,TCGA-EJ-5525,22,22,-,+,39711374,41936225,39710969,41930826,CDS,NA,NA,1008,7,1,N,N
FAM110B,DIABLO,PRAD,TCGA-EJ-5526,8,12,+,-,58915183,122702944,58916328,122706532,NA,CDS,NA,267,10,1,Y,N
NOTCH2,nc_chr1,PRAD,TCGA-G9-6338,1,1,-,+,120464859,145004783,120464665,144995740,CDS,NA,NA,323,4,1,N,N
IMPDH1,nc_chr7,PRAD,TCGA-CH-5788,7,7,-,+,128045821,124029526,128045805,124028884,CDS,NA,NA,123,39,14,N,N
ARHGEF38,nc_chr21,PRAD,TCGA-EJ-5530,4,21,+,+,106534664,39911086,106538126,39878292,CDS,NA,NA,83,2,1,N,N
SNX19,USP28,PRAD,TCGA-HC-7232,11,11,-,-,130784161,113675768,130783106,113678123,CDS,CDS,IF,44,2,1,Y,N
CDYL2,VEPH1,PRAD,TCGA-HC-7744,16,3,-,-,80838047,157082301,80777186,157085920,CDS,CDS,OOF,73,21,14,N,N
UCHL5,nc_chr1,PRAD,TCGA-EJ-5518,1,1,-,-,193020884,174301188,193018939,174306013,CDS,NA,NA,54,4,1,N,N
GART,nc_chr21,PRAD,TCGA-HC-7230,21,21,-,+,34882090,39852162,34881306,39851097,CDS,NA,NA,54,4,2,N,N
TRIO,IQUB,PRAD,TCGA-CH-5741,5,7,+,-,14304701,123097620,14309633,123099719,CDS,CDS,IF,55,5,1,N,N
ELAC2,COX10,PRAD,TCGA-HC-7213,17,17,-,+,12919085,14063194,12918797,14025564,CDS,CDS,IF,55,7,2,N,N
ZBTB1,nc_chr19,PRAD,TCGA-HC-7211,14,19,+,+,64971664,51306886,64973347,51300782,UTR,NA,NA,54,2,1,N,N
KIF3B,nc_chr20,PRAD,TCGA-HC-7740,20,20,+,-,30865568,32383422,30883792,32383895,UTR,NA,NA,52,4,2,N,N
PNPLA7,DPH7,PRAD,TCGA-HC-7740,9,9,-,-,140409831,140450100,140400578,140454260,CDS,CDS,IF,51,30,11,N,N
TTC6,MIPOL1,PRAD,TCGA-CH-5761,14,14,+,+,38092208,37892060,38141713,37847831,NA,CDS,NA,48,3,1,N,N
ZNF598,nc_chr16,PRAD,TCGA-HC-8258,16,16,-,-,2059525,2111471,2054283,2111539,CDS,NA,NA,47,14,16,N,N
ZMYM2,nc_chr13,PRAD,TCGA-EJ-5499,13,13,+,-,20534166,31651078,20550888,31667392,UTR,NA,NA,28,2,1,Y,N
TEAD1,MICAL2,PRAD,TCGA-EJ-5503,11,11,+,+,12697108,12229570,12710329,12227312,UTR,CDS,NA,34,18,15,N,N
CCDC6,nc_chr10,PRAD,TCGA-HC-7744,10,10,-,+,61592283,98136315,61590233,98134837,CDS,NA,NA,39,21,4,N,N
PDE4D,DEPDC1B,PRAD,TCGA-EJ-5521,5,5,-,-,59481384,59943360,59466343,59957221,CDS,CDS,OOF,30,2,1,N,N
USP45,RIOK1,PRAD,TCGA-G9-6351,6,6,-,+,99956486,7417564,99949106,7414292,CDS,CDS,IF,24,4,2,N,N
C1orf50,nc_chr19,PRAD,TCGA-CH-5766,1,19,+,-,43233295,30067674,43234490,30069513,CDS,NA,NA,23,2,1,N,N
TTC21B,SLC38A11,PRAD,TCGA-HC-7744,2,2,-,-,166810195,165802237,166809752,165804324,CDS,CDS,OOF,15,25,6,Y,N
PPIP5K2,nc_chr5,PRAD,TCGA-CH-5752,5,3,+,-,102474173,69908874,102479684,69925085,CDS,NA,NA,21,7,3,N,N
RPS15,nc_chr19,PRAD,TCGA-HC-7744,19,19,+,+,1438427,3801467,1438827,3785092,CDS,NA,NA,16,19,5,N,N
BRWD1,nc_chr13,PRAD,TCGA-HC-7744,21,13,-,+,40684767,24928251,40673368,24917671,CDS,NA,NA,12,31,4,N,N
CHD1,nc_chr5,PRAD,TCGA-CH-5788,5,5,-,-,98262038,96614673,98202544,96665886,CDS,NA,NA,14,36,15,N,N
ZNF618,PARP4,PRAD,TCGA-HC-7744,9,13,+,-,116638693,25027792,116703099,25028365,CDS,CDS,OOF,14,7,10,N,N
IDE,nc_chr11,PRAD,TCGA-G9-7522,10,11,-,-,94225433,111809204,94224242,111811762,CDS,NA,NA,13,3,3,N,N
TP53,nc_chr17,PRAD,TCGA-CH-5751,17,17,-,-,7576853,8690551,7576412,8692329,CDS,NA,NA,9,5,1,Y,N
CDYL,RPP40,PRAD,TCGA-EJ-7782,6,6,+,-,4777041,5000865,4814670,5001064,CDS,CDS,OOF,12,2,3,N,N
FAM110B,nc_chr8,PRAD,TCGA-CH-5751,8,8,+,+,58988182,58270005,59067655,58243012,UTR,NA,NA,9,7,2,N,N
nc_chr14,MIPOL1,PRAD,TCGA-EJ-5514,14,14,+,+,38075947,37969113,38091672,37951027,NA,CDS,NA,7,2,1,N,N
TMPRSS2,ERG,PRAD,TCGA-HC-7212,21,21,-,-,42880008,39817544,42866927,39874417,UTR,CDS,NA,194,3,1,Y,N
UVRAG,PCBD1,PRAD,TCGA-G9-6361,11,10,+,-,75623083,72643805,75630304,72644514,CDS,CDS,OOF,29,3,1,Y,N
SATB1,nc_chr3,PRAD,TCGA-EJ-7785,3,3,-,+,18419662,36351239,18401290,36328964,CDS,NA,NA,18,2,1,Y,N
SIN3A,nc_chr15,SKCM,TCGA-DA-A3F5,15,15,-,-,75722528,74191840,75717814,74203950,CDS,NA,NA,1971,284,15,N,N
MAP3K8,nc_chr20,SKCM,TCGA-ER-A196,10,20,+,-,30748430,56937997,30748945,56939101,CDS,NA,NA,685,25,3,N,N
ZFC3H1,nc_chr12,SKCM,TCGA-D9-A1X3,12,12,-,-,72036216,70273229,72035771,70273328,CDS,NA,NA,518,167,11,N,N
nc_chr8,PAG1,SKCM,TCGA-FS-A1ZP,8,8,+,-,93834413,81892729,93840131,81935293,NA,CDS,NA,184,47,35,Y,N
TNPO2,NFIX,SKCM,TCGA-DA-A1I0,19,19,-,+,12834063,13183861,12831777,13165742,UTR,CDS,NA,244,34,24,Y,N
TMED5,nc_chr1,SKCM,TCGA-D3-A2J6,1,1,-,+,93645611,100684200,93631415,100669727,CDS,NA,NA,319,4,1,N,N
EIF2S2,nc_chr20,SKCM,TCGA-D3-A1Q9,20,20,-,-,32681481,47939217,32681114,47941550,CDS,NA,NA,296,11,1,N,N
PRPF4B,F13A1,SKCM,TCGA-GN-A264,6,6,+,-,4021700,6197559,4023151,6207497,CDS,CDS,IF,307,10,4,N,N
DDX52,nc_chr17,SKCM,TCGA-DA-A1I2,17,17,-,-,36002139,66712975,35999557,66727083,CDS,NA,NA,255,22,16,N,N
WRAP73,nc_chr1,SKCM,TCGA-ER-A19T,1,1,-,+,3563230,30769173,3557627,30759087,CDS,NA,NA,248,23,8,N,N
RSF1,nc_chr11,SKCM,TCGA-ER-A19T,11,11,-,+,77451776,70436634,77437804,70435972,CDS,NA,NA,132,115,15,Y,N
ITCH,nc_chrX,SKCM,TCGA-ER-A197,20,X,+,+,32957276,46501434,32979081,46487118,UTR,NA,NA,205,9,2,N,N
HGSNAT,TRIQK,SKCM,TCGA-D3-A1Q1,8,8,+,-,43027529,93997124,43027712,94012406,CDS,NA,NA,156,18,8,Y,N
ERC1,nc_chr12,SKCM,TCGA-D3-A3CC,12,12,+,+,1250953,69290762,1287714,69278876,CDS,NA,NA,75,18,1,Y,N
DHDDS,nc_chr1,SKCM,TCGA-D3-A3MO,1,1,+,+,26759499,46947882,26759852,46918792,CDS,NA,NA,107,43,23,Y,N
ATXN10,nc_chr5,SKCM,TCGA-D3-A2JC,22,5,+,-,46136418,4805961,46193101,4827509,CDS,NA,NA,136,26,4,N,N
DGCR2,GNB1L,SKCM,TCGA-FS-A1ZK,22,22,-,-,19052361,19776483,19050970,19778120,CDS,CDS,OOF,120,6,8,N,N
CELSR1,TTC40,SKCM,TCGA-EE-A29V,22,10,-,-,46929524,134628418,46914678,134633145,CDS,CDS,IF,84,8,1,Y,N
NEURL4,MSI2,SKCM,TCGA-DA-A1I7,17,17,-,+,7221107,55509947,7220989,55509546,CDS,NA,NA,99,6,1,N,N
SIPA1L3,CEP89,SKCM,TCGA-FS-A1ZK,19,19,+,-,38682950,33372919,38683031,33378247,CDS,CDS,IF,79,45,22,N,N
WHSC1,POLN,SKCM,TCGA-D9-A1X3,4,4,+,-,1977127,2200444,1977530,2205465,CDS,CDS,IF,89,46,7,N,N
SCAPER,TSPAN3,SKCM,TCGA-EE-A29D,15,15,-,-,77134075,77348597,77106664,77355195,CDS,CDS,IF,88,5,1,N,N
DPM1,nc_chr11,SKCM,TCGA-FS-A1ZT,20,11,-,+,49557402,71383239,49555368,71382820,CDS,NA,NA,72,3,1,N,N
MAEA,nc_chr11,SKCM,TCGA-DA-A1HW,4,11,+,-,1309388,36099687,1310849,36103408,CDS,NA,NA,58,21,7,Y,N
C9orf85,FXN,SKCM,TCGA-FS-A1ZP,9,9,+,+,74526752,71679854,74531692,71676235,CDS,CDS,IF,72,15,10,N,N
SLC11A2,nc_chr12,SKCM,TCGA-D3-A1Q1,12,12,-,-,51384578,44281467,51384511,44296544,CDS,NA,NA,39,32,8,Y,N
CLPX,nc_chr7,SKCM,TCGA-ER-A193,15,7,-,-,65448030,158982595,65447686,158983701,CDS,NA,NA,69,6,2,N,N
MAPKAPK5,ACAD10,SKCM,TCGA-ER-A19D,12,12,+,+,112308984,112182447,112315776,112180759,CDS,CDS,OOF,68,46,3,N,N
YTHDF1,nc_chr8,SKCM,TCGA-EE-A2MH,20,8,-,-,61833639,72448083,61829306,72448577,CDS,NA,NA,57,9,2,N,N
PDZD8,ENO4,SKCM,TCGA-DA-A1I8,10,10,-,+,119078383,118615134,119056605,118612608,CDS,CDS,IF,44,17,12,Y,N
MTMR3,nc_chr22,SKCM,TCGA-D3-A2JC,22,22,+,-,30279348,49718019,30285555,49720128,UTR,NA,NA,33,15,1,Y,N
AP2A2,TOLLIP,SKCM,TCGA-FS-A1ZA,11,11,+,-,926088,1298483,926525,1298506,CDS,CDS,IF,61,5,1,N,N
nc_chr5,GRAP2,SKCM,TCGA-D3-A2JC,5,22,+,+,8457879,40343097,8459327,40332628,NA,UTR,NA,59,9,1,N,N
nc_chr15,RCN2,SKCM,TCGA-GN-A26A,15,15,+,+,74501875,77236099,74502903,77234262,NA,CDS,NA,46,15,10,Y,N
ZNF507,BCL2L13,SKCM,TCGA-FS-A1YY,19,22,+,+,32851524,18209443,32874626,18207254,CDS,CDS,OOF,50,17,1,N,N
USP10,ATP2C2,SKCM,TCGA-D3-A1Q1,16,16,+,+,84773975,84442011,84778082,84440860,CDS,CDS,OOF,54,7,3,N,N
SPTY2D1,SERGEF,SKCM,TCGA-DA-A1HW,11,11,-,-,18655745,17809960,18645444,17828855,CDS,CDS,OOF,52,17,14,N,N
SAP30BP,nc_chr14,SKCM,TCGA-FS-A1ZS,17,14,+,+,73689562,74981614,73695613,74978944,CDS,NA,NA,32,27,2,Y,N
FAM222B,CRLF3,SKCM,TCGA-FS-A1ZK,17,17,-,-,27139227,29131126,27102947,29137392,NA,CDS,NA,23,25,4,Y,N
HIPK3,nc_chr11,SKCM,TCGA-DA-A1HW,11,11,+,+,33279435,34898557,33280958,34860532,UTR,NA,NA,50,41,10,N,N
KCNIP4,nc_chr4,SKCM,TCGA-D9-A1X3,4,4,-,+,21950194,13103962,21870441,13102284,UTR,NA,NA,41,14,1,N,N
FAM3C,nc_chr7,SKCM,TCGA-ER-A19E,7,7,-,-,121002951,141735900,121001202,141741675,CDS,NA,NA,48,22,5,N,N
GPATCH11,DYM,SKCM,TCGA-ER-A19E,2,18,+,-,37315583,46690157,37316143,46766228,CDS,CDS,IF,47,20,13,N,N
MYO10,SLC12A7,SKCM,TCGA-FS-A1ZG,5,5,-,-,16794755,1094363,16794539,1100997,CDS,CDS,OOF,46,8,1,N,N
ELMO2,nc_chr20,SKCM,TCGA-ER-A19L,20,20,-,+,45021732,45141672,45021263,45120950,CDS,NA,NA,19,32,25,Y,N
FOXJ2,nc_chr12,SKCM,TCGA-D3-A3CC,12,12,+,+,8197554,60260890,8198422,60248809,CDS,NA,NA,41,13,2,N,N
ATRX,nc_chr2,SKCM,TCGA-FS-A1ZJ,X,2,-,-,77041468,145731306,77014637,145824288,CDS,NA,NA,18,10,2,Y,N
SEMA5A,nc_chr5,SKCM,TCGA-D3-A2JC,5,5,-,+,9318484,32347492,9292737,32329372,CDS,NA,NA,20,66,2,Y,N
COL4A3BP,ELOVL7,SKCM,TCGA-DA-A3F3,5,5,-,-,74801807,60083258,74775713,60084230,CDS,UTR,NA,37,23,11,N,N
nc_chr20,ZNF248,SKCM,TCGA-GN-A26C,20,10,+,-,49985390,38127039,49995643,38144948,NA,CDS,NA,31,41,7,N,N
ISL2,PEAK1,SKCM,TCGA-DA-A3F5,15,15,+,-,76629282,77474382,76631147,77495265,CDS,UTR,NA,30,545,96,N,N
SREK1IP1,nc_chr5,SKCM,TCGA-DA-A3F3,5,5,-,-,64064332,75582628,64057654,75598136,CDS,NA,NA,21,5,6,Y,N
DHX35,TOX2,SKCM,TCGA-FS-A1ZE,20,20,+,+,37591050,42602007,37592129,42565565,CDS,CDS,OOF,34,21,1,N,N
nc_chr5,CBY1,SKCM,TCGA-D3-A2JC,5,22,+,+,10239362,39069164,10247139,39067762,NA,CDS,NA,23,52,1,Y,N
RAD54L2,nc_chr7,SKCM,TCGA-FS-A1ZU,3,7,+,+,51671519,127864086,51671984,127861199,CDS,NA,NA,28,9,7,N,N
IREB2,DIAPH3,SKCM,TCGA-GN-A262,15,13,+,-,78732223,60499004,78780939,60510014,CDS,CDS,IF,33,32,9,N,N
BRD9,nc_chr5,SKCM,TCGA-D9-A1X3,5,5,-,+,892721,7336021,892469,7333315,CDS,NA,NA,30,37,1,N,N
PDE8A,SLCO3A1,SKCM,TCGA-DA-A1HW,15,15,+,+,85525579,92638111,85577498,92461837,CDS,CDS,OOF,29,30,17,N,N
FARS2,SYCP2L,SKCM,TCGA-EE-A3JI,6,6,+,+,5261893,10930603,5350257,10818853,UTR,CDS,NA,18,22,4,Y,N
CALM3,CHRNA4,SKCM,TCGA-FS-A1ZD,19,20,+,-,47104694,61975738,47108523,61976297,CDS,NA,NA,25,19,11,N,N
ST8SIA6,nc_chr20,SKCM,TCGA-ER-A196,10,20,-,-,17495558,58899459,17494455,58899841,CDS,NA,NA,13,23,4,Y,N
INPP5F,GRK5,SKCM,TCGA-FS-A1ZD,10,10,+,+,121485871,121140327,121504580,121077283,CDS,CDS,IF,23,14,3,N,N
DENND4A,MEGF11,SKCM,TCGA-EE-A29D,15,15,-,-,66007816,66191272,65999013,66195234,CDS,CDS,OOF,22,5,1,N,N
CDC27,BRAF,SKCM,TCGA-FS-A1ZU,17,7,-,-,45206759,140487384,45206348,140491464,CDS,CDS,IF,22,14,5,N,N
SH3D19,INPP4B,SKCM,TCGA-FS-A1ZD,4,4,-,-,152147199,143352538,152114320,143381725,UTR,UTR,NA,21,10,11,N,N
MTAP,nc_chr9,SKCM,TCGA-BF-A1PZ,9,9,+,+,21802780,22210663,21805815,22191991,CDS,NA,NA,20,8,2,N,N
RERE,nc_chr1,SKCM,TCGA-D3-A3MO,1,1,-,+,8555123,50890110,8534979,50887581,CDS,NA,NA,20,7,12,N,N
CTIF,nc_chr18,SKCM,TCGA-ER-A19T,18,18,+,+,46065683,47931545,46099994,47926975,UTR,NA,NA,14,64,37,Y,N
CHD9,nc_chr16,SKCM,TCGA-D3-A2JC,16,16,+,+,53256667,52375068,53258576,52367339,CDS,NA,NA,10,2,1,Y,N
ATP1A1,ATG4C,SKCM,TCGA-EE-A2GP,1,1,+,+,116916145,63329663,116921480,63326570,CDS,CDS,IF,16,4,1,N,N
HIVEP1,TXNDC5,SKCM,TCGA-EE-A3JI,6,6,+,-,12015901,7904956,12040801,8001283,CDS,CDS,OOF,16,22,6,N,N
SNAPC3,nc_chr1,SKCM,TCGA-DA-A3F3,9,1,+,+,15423984,120503316,15427163,120465928,CDS,NA,NA,11,19,9,Y,N
TMTC3,nc_chr12,SKCM,TCGA-EE-A29D,12,12,+,+,88570096,53399862,88576231,53399131,CDS,NA,NA,15,4,1,N,N
TATDN2,IRAK2,SKCM,TCGA-EE-A2GR,3,3,+,+,10312699,10280432,10313363,10278383,CDS,CDS,IF,15,4,1,N,N
DYNC2H1,nc_chr6,SKCM,TCGA-ER-A19T,11,6,+,-,103229087,90305786,103253133,90306812,CDS,NA,NA,15,12,9,N,N
nc_chr11,ATP6V1H,SKCM,TCGA-ER-A19T,11,8,-,-,87665725,54682303,87599114,54682995,NA,CDS,NA,15,10,7,N,N
CAPRIN2,R3HDM2,SKCM,TCGA-D3-A3CC,12,12,-,-,30893954,57697000,30891442,57701152,CDS,CDS,IF,9,13,1,Y,N
CLIC1,MSH5,SKCM,TCGA-FS-A1ZK,6,6,-,+,31699994,31710654,31699827,31709277,CDS,CDS,OOF,14,18,16,N,N
CUX1,nc_chr7,SKCM,TCGA-ER-A19J,7,7,+,-,101671425,110252368,101683850,110297613,CDS,NA,NA,7,27,13,Y,N
ARID4B,nc_chr1,SKCM,TCGA-ER-A3ES,1,1,-,-,235416045,235590624,235411967,235596638,CDS,NA,NA,8,13,4,Y,N
PSMA1,SERGEF,SKCM,TCGA-DA-A1HW,11,11,-,-,14632512,17981183,14627440,17982222,CDS,CDS,OOF,11,10,4,N,N
ATXN7L1,nc_chr7,SKCM,TCGA-GF-A2C7,7,7,-,-,105429050,105754518,105424063,105797550,CDS,NA,NA,11,18,1,N,N
FBXL19,ZNF720,SKCM,TCGA-DA-A1HW,16,16,+,+,30941905,31803951,30952237,31789525,CDS,NA,NA,10,12,8,N,N
DUSP8,SCRN1,SKCM,TCGA-EE-A2GN,11,7,-,-,1593131,30008684,1591110,30029733,UTR,CDS,NA,9,31,18,N,N
REPIN1,nc_chr7,SKCM,TCGA-EE-A29H,7,7,+,-,150066030,141756847,150066831,141758126,UTR,NA,NA,5,11,1,Y,N
RBBP5,nc_chr1,SKCM,TCGA-FS-A1ZU,1,1,-,+,205090983,205101431,205085830,205095941,CDS,NA,NA,8,9,4,N,N
COL15A1,GALNT12,SKCM,TCGA-D3-A1Q1,9,9,+,+,101804389,101583139,101805025,101582544,CDS,NA,NA,6,11,8,N,N
MTMR12,nc_chr5,SKCM,TCGA-D3-A2JC,5,5,-,-,32235068,32811201,32234026,32830866,CDS,NA,NA,6,21,5,N,N
ZNF528,ZNF83,SKCM,TCGA-FS-A1ZK,19,19,+,-,52909896,53189124,52918292,53190596,CDS,NA,NA,6,13,5,N,N
TRIM33,nc_chr1,SKCM,TCGA-EE-A29V,1,1,-,+,115005726,117663416,115000917,117652365,CDS,NA,NA,5,18,1,N,N
WARS2,nc_chr1,SKCM,TCGA-EE-A2GR,1,1,-,+,119683178,121236038,119681635,121216487,CDS,NA,NA,5,20,3,N,N
WNK1,nc_chr12,SKCM,TCGA-D3-A3CC,12,12,+,-,863490,70636673,864956,70728461,CDS,NA,NA,4,13,1,N,N
DDX42,nc_chr17,SKCM,TCGA-EE-A2MN,17,17,+,-,61852538,3542379,61863202,3550687,UTR,NA,NA,4,5,1,N,N
SETBP1,nc_chr18,SKCM,TCGA-ER-A19T,18,18,+,-,42449248,45155747,42500248,45188212,CDS,NA,NA,4,8,9,N,N
OSBPL8,nc_chr12,SKCM,TCGA-BF-A1PU,12,12,-,+,76881290,73352845,76848367,73317755,CDS,NA,NA,3,12,1,N,N
NPHP4,CDKN2A,SKCM,TCGA-EE-A20H,1,9,-,-,6046215,21971207,6038860,21974161,CDS,CDS,IF,121,14,1,N,N
KIAA1755,nc_chr20,SKCM,TCGA-FS-A1ZE,20,20,-,+,36851940,34545643,36849505,34544196,CDS,NA,NA,50,23,4,N,N
GRAP2,BRD1,SKCM,TCGA-FS-A1ZK,22,22,+,-,40365537,50192767,40366927,50193100,CDS,CDS,IF,78,9,4,N,N
USP8,nc_chr11,SKCM,TCGA-ER-A19T,15,11,+,-,50731374,71035196,50732324,71069773,CDS,NA,NA,226,102,85,Y,N
nc_chr4,FGFR3,SKCM,TCGA-D9-A1X3,4,4,+,+,2538897,1803347,2539084,1803223,NA,CDS,NA,203,34,1,Y,N
nc_chr8,LY6H,SKCM,TCGA-D3-A3MO,8,8,+,-,137466833,144241126,137471776,144241185,NA,CDS,NA,23,16,8,N,N
SAP30BP,nc_chr17,SKCM,TCGA-FS-A1ZS,17,14,+,+,73689562,74981614,73695613,74978944,CDS,NA,NA,32,27,2,Y,N
FAM168A,PXDNL,SKCM,TCGA-ER-A19T,11,8,-,-,73308968,52339318,73227076,52589939,UTR,CDS,NA,25,149,94,N,N
FAM168A,RNF121,SKCM,TCGA-ER-A19T,11,11,-,+,73308968,71668273,73263976,71667777,UTR,CDS,NA,113,112,70,Y,N
SPPL2A,TENM4,SKCM,TCGA-ER-A19T,15,11,-,-,51012137,78781054,51004265,78790640,CDS,UTR,NA,41,266,66,Y,N
AKAP13,nc_chr15,SKCM,TCGA-GN-A26A,15,15,+,+,86266551,83582082,86267316,83550008,CDS,NA,NA,10,11,4,Y,N
RNF216,nc_chr19,SKCM,TCGA-DA-A1HW,7,19,-,-,5680785,30870850,5665884,30872081,CDS,NA,NA,32,17,4,Y,N
MBTD1,nc_chr5,SKCM,TCGA-FS-A1ZK,17,5,-,+,49336504,59825231,49305425,59822435,UTR,NA,NA,16,8,3,Y,N
CCZ1,nc_chr5,SKCM,TCGA-FS-A1ZK,7,5,+,+,5958531,99755149,5958935,99745727,CDS,NA,NA,12,3,2,Y,N
NFAT5,DENND2C,SKCM,TCGA-D3-A3MO,16,1,+,-,69600277,115130573,69693514,115144303,CDS,CDS,IF,22,10,6,Y,N
POGZ,HHIPL2,SKCM,TCGA-GN-A26A,1,1,-,-,151381170,222712116,151380979,222712797,CDS,CDS,OOF,27,13,9,Y,N
RECK,nc_chr9,SKCM,TCGA-FS-A1ZT,9,9,+,+,36102227,36521366,36102416,36506787,CDS,NA,NA,8,5,1,Y,N
NPTN,nc_chr15,SKCM,TCGA-DA-A3F5,15,15,-,+,73925466,77660241,73891839,77520164,CDS,NA,NA,32,536,4,Y,N
SLC3A2,GRAP2,SKCM,TCGA-FS-A1ZK,11,22,+,+,62653080,40365415,62653218,40365120,CDS,CDS,IF,89,5,5,Y,N
VPS13C,nc_chr15,SKCM,TCGA-DA-A1HW,15,15,-,+,62219290,70133085,62218126,70126902,CDS,NA,NA,10,17,17,Y,N
AEBP2,PRLR,SKCM,TCGA-D3-A3CC,12,5,+,-,19646920,35118224,19649851,35121149,CDS,UTR,NA,19,13,1,Y,N
MET,TFG,THCA,TCGA-FK-A3S3,7,3,+,+,116412043,100455420,116412441,100454524,CDS,CDS,IF,992,17,15,N,N
MACF1,BRAF,THCA,TCGA-DE-A0Y2,1,7,+,-,39896580,140487384,39897091,140490210,CDS,CDS,IF,201,9,3,N,N
RAF1,AGGF1,THCA,TCGA-EM-A1CS,3,5,-,+,12645635,76342172,12642551,76339879,CDS,CDS,IF,118,3,1,N,N
CCDC6,RET,THCA,TCGA-FK-A3SE,10,10,-,+,61665880,43612032,61655978,43611999,CDS,CDS,IF,132,28,12,N,N
RET,nc_chr10,THCA,TCGA-DJ-A2Q1,10,10,+,+,43610184,57582999,43611727,57561503,CDS,NA,NA,104,18,16,N,N
CCDC6,RET,THCA,TCGA-EL-A3TB,10,10,-,+,61665880,43612032,61656302,43611768,CDS,CDS,IF,80,29,17,N,N
TFB2M,nc_chr1,THCA,TCGA-FE-A238,1,1,-,-,246727648,246731432,246726454,246735262,CDS,NA,NA,64,6,1,N,N
NCOA4,RET,THCA,TCGA-EM-A2CU,10,10,+,+,51582939,43612032,51583205,43611620,CDS,CDS,IF,57,46,33,N,N
BRAF,AP3B1,THCA,TCGA-EL-A3T0,7,5,-,-,140494108,77335098,140491459,77344128,CDS,CDS,IF,52,26,13,N,N
LRP2,nc_chr2,THCA,TCGA-BJ-A0ZG,2,2,-,-,170127414,169589613,170115935,169598356,CDS,NA,NA,23,16,1,Y,N
CCDC6,RET,THCA,TCGA-BJ-A28Z,10,10,-,+,61665880,43612032,61613177,43611837,CDS,CDS,IF,25,5,1,N,N
ERC1,RET,THCA,TCGA-EM-A3FQ,12,10,+,+,1553916,43612032,1562842,43610198,CDS,CDS,IF,20,7,8,N,N
STRN,ALK,THCA,TCGA-DJ-A3US,2,2,-,-,37143221,29446394,37137825,29448140,CDS,CDS,IF,19,24,9,N,N
ZNF419,nc_chr19,THCA,TCGA-EL-A3MY,19,19,+,+,58002965,57988849,58003157,57988485,CDS,NA,NA,17,28,16,N,N
ERC1,RET,THCA,TCGA-EL-A3T9,12,10,+,+,1346070,43612032,1366993,43612016,CDS,CDS,IF,15,12,13,N,N
TG,THADA,THCA,TCGA-DJ-A1QL,8,2,+,-,133984986,43520352,133989829,43534763,CDS,CDS,IF,5621,8,2,Y,N
nc_chr11,ALK,THCA,TCGA-DJ-A4UT,11,2,+,-,65269864,29451932,65270345,29454202,NA,CDS,NA,196,17,12,Y,N
PAX8,NFE2L2,THCA,TCGA-EM-A2CP,2,2,-,-,113999128,178097311,113995572,178097585,CDS,CDS,IF,245,4,6,Y,N
GADD45GIP1,CSTF1,UCEC,TCGA-D1-A17K,19,20,-,+,13067677,54978524,13067616,54978186,CDS,CDS,OOF,138,45,17,Y,N
PRRC2B,PITPNC1,UCEC,TCGA-AX-A1C8,9,17,+,+,134323191,65671595,134329026,65668281,CDS,CDS,OOF,70,29,14,Y,N
MKL1,ARHGEF28,UCEC,TCGA-AP-A053,22,5,-,+,40948110,73236669,40899919,73223655,UTR,CDS,NA,80,23,6,Y,N
TMEM123,MMP27,UCEC,TCGA-D1-A1NU,11,11,-,-,102319543,102567222,102282219,102569804,CDS,CDS,IF,54,9,14,Y,N
UNK,nc_chr17,UCEC,TCGA-D1-A16I,17,17,+,+,73781065,73620851,73783896,73620695,CDS,NA,NA,68,10,3,Y,N
SENP6,nc_chr6,UCEC,TCGA-AP-A052,6,6,+,+,76344527,75736024,76348504,75731031,CDS,NA,NA,56,8,6,Y,N
6-Mar,nc_chr5,UCEC,TCGA-AP-A0L9,5,5,+,-,10394255,10325051,10394383,10327264,CDS,NA,NA,63,7,11,Y,N
IFNAR1,nc_chr21,UCEC,TCGA-AP-A052,21,21,+,+,34725214,34416902,34725739,34416859,CDS,NA,NA,34,15,17,Y,N
VPS11,ATP5L,UCEC,TCGA-AP-A05D,11,11,+,+,118944661,118279715,118944978,118278112,CDS,CDS,OOF,43,13,5,Y,N
GTF2I,GTF2IRD1,UCEC,TCGA-AX-A06B,7,7,+,+,74133260,74004180,74136538,73999312,CDS,CDS,IF,36,14,7,Y,N
GTPBP2,nc_chr6,UCEC,TCGA-D1-A1NU,6,6,-,-,43596714,44665357,43595306,44666400,CDS,NA,NA,36,34,21,Y,N
POLR2B,FIP1L1,UCEC,TCGA-BK-A139,4,4,+,+,57845170,54308820,57852029,54304482,CDS,CDS,IF,41,17,18,Y,N
USP25,nc_chr21,UCEC,TCGA-D1-A16G,21,21,+,-,17138460,32178582,17148274,32244801,CDS,NA,NA,26,8,9,Y,N
SEMA4D,nc_chr2,UCEC,TCGA-AP-A052,9,2,-,+,92070803,130850750,92049111,130841582,UTR,NA,NA,15,4,3,Y,N
DLG4,SHBG,UCEC,TCGA-B5-A0K3,17,17,-,+,7106222,7536522,7101046,7536318,CDS,CDS,IF,24,19,11,Y,N
SUV420H1,C11orf24,UCEC,TCGA-EY-A1GS,11,11,-,-,67947599,68029193,67942779,68029632,CDS,NA,NA,24,10,6,Y,N
RPS6KB1,VMP1,UCEC,TCGA-EY-A1GS,17,17,+,+,57992064,57851115,57999022,57849298,CDS,CDS,IF,24,21,15,Y,N
PTPRU,nc_chr1,UCEC,TCGA-AX-A1C8,1,1,+,-,29618538,30185383,29629943,30191010,CDS,NA,NA,25,22,17,Y,N
DDR1,nc_chr6,UCEC,TCGA-BK-A0CC,6,6,+,+,30857207,30711011,30857619,30697869,CDS,NA,NA,20,8,3,Y,N
NUP210,nc_chr3,UCEC,TCGA-EO-A1Y8,3,3,-,-,13461560,14431890,13454420,14434424,CDS,NA,NA,23,3,4,Y,N
MSH2,M1AP,UCEC,TCGA-AJ-A23M,2,2,+,-,47672796,74787418,47676742,74788342,CDS,CDS,IF,17,2,7,Y,N
METTL24,SLC22A16,UCEC,TCGA-D1-A1NU,6,6,-,-,110636545,110778220,110622091,110780602,CDS,CDS,IF,14,24,4,Y,N
RAB8B,nc_chr2,UCEC,TCGA-AP-A052,15,2,+,+,63541904,202539577,63546769,202539075,CDS,NA,NA,12,7,11,Y,N
ZNF3,ACTL6B,UCEC,TCGA-AP-A0LI,7,7,-,-,99677159,100247758,99675243,100249383,UTR,CDS,NA,14,11,2,Y,N
S100PBP,RBBP4,UCEC,TCGA-B5-A0K3,1,1,+,+,33291030,33117515,33291314,33116951,UTR,CDS,NA,16,17,14,Y,N
MAP4K5,PYGL,UCEC,TCGA-D1-A16G,14,14,-,-,50929383,51383823,50928825,51384893,CDS,CDS,IF,15,11,6,Y,N
LRCH1,nc_chr5,UCEC,TCGA-AP-A0L9,13,5,+,+,47275342,124855221,47276795,124825418,CDS,NA,NA,11,25,20,Y,N
ASXL1,nc_chr2,UCEC,TCGA-B5-A0K3,20,2,+,-,30956926,29022180,30980566,29026123,CDS,NA,NA,15,14,16,Y,N
ITGAV,C19orf43,UCEC,TCGA-AP-A0LF,2,19,+,-,187519435,12841882,187520246,12842062,CDS,CDS,OOF,10,12,7,Y,N
LPP,nc_chr3,UCEC,TCGA-BS-A0U9,3,3,+,+,187943315,187490250,187948136,187464376,UTR,NA,NA,6,14,2,Y,N
nc_chr3,WNT7A,UCEC,TCGA-D1-A1NU,3,3,-,-,13678378,13860920,13672224,13885540,NA,CDS,NA,5,38,11,Y,N
DDI2,EFHD2,UCEC,TCGA-AP-A0L9,1,1,+,+,15953293,15752367,15954010,15744908,CDS,CDS,OOF,12,4,7,Y,N
CUTA,GRM4,UCEC,TCGA-DI-A1NN,6,6,-,-,33384874,33990647,33384594,33995350,CDS,CDS,OOF,9,14,4,Y,N
nc_chr22,GTSE1,UCEC,TCGA-A5-A0G5,22,22,+,+,46494438,46719087,46503052,46714881,NA,CDS,NA,5,2,1,Y,N
ARMC8,nc_chr3,UCEC,TCGA-AP-A053,3,3,+,+,137947852,137823425,137950794,137817372,CDS,NA,NA,8,18,9,Y,N
NSD1,nc_chr5,UCEC,TCGA-AX-A1C8,5,5,+,+,176671271,176209022,176672818,176174130,CDS,NA,NA,5,20,22,Y,N
RBM45,nc_chr2,UCEC,TCGA-BK-A139,2,2,+,+,178985136,177520192,178985338,177519995,CDS,NA,NA,8,10,9,Y,N
SYPL2,nc_chr1,UCEC,TCGA-D1-A17K,1,1,+,+,110019599,109572665,110021471,109571015,CDS,NA,NA,7,26,9,Y,N
TEAD2,nc_chr19,UCEC,TCGA-D1-A17K,19,19,-,-,49851960,50385431,49851013,50385582,CDS,NA,NA,8,22,15,Y,N
CYTH1,nc_chr17,UCEC,TCGA-B5-A11I,17,17,-,+,76778284,76831149,76772767,76830551,CDS,NA,NA,6,372,184,Y,N
FAM172A,nc_chr5,UCEC,TCGA-BK-A0CC,5,5,-,-,93386436,92747215,93322818,92843161,CDS,NA,NA,5,8,8,Y,N
ST3GAL3,nc_chr12,UCEC,TCGA-D1-A1O0,1,12,+,+,44280605,47690008,44300574,47671358,CDS,NA,NA,8,3,1,Y,N
ITPR3,ZBTB17,UCEC,TCGA-AP-A052,6,1,+,-,33658886,16274992,33659301,16289100,CDS,UTR,NA,8,10,17,Y,N
LRRC16B,nc_chr14,UCEC,TCGA-AP-A0L8,14,14,+,+,24523510,23528251,24523515,23528251,CDS,NA,NA,7,13,11,Y,N
nc_chr2,TCF7L1,UCEC,TCGA-AP-A05A,2,2,-,+,67911084,85529607,67848192,85521113,NA,CDS,NA,6,2,11,Y,N
C16orf62,SYT17,UCEC,TCGA-AP-A0LH,16,16,+,+,19603196,19261263,19612471,19259032,CDS,NA,NA,8,8,8,Y,N
NOMO1,nc_chr16,UCEC,TCGA-B5-A0K3,16,16,+,-,14947823,14951362,14988610,15031371,NA,CDS,NA,2,6,18,Y,N
nc_chr14,C14orf166B,UCEC,TCGA-BK-A139,14,14,+,+,77564704,77318708,77566675,77312330,UTR,CDS,NA,12,6,2,N,N
UBAC1,nc_chr9,UCEC,TCGA-D1-A17K,9,9,-,-,138836874,139855471,138832936,139868489,CDS,NA,NA,8,16,9,Y,N
SNX29,nc_chr16,UCEC,TCGA-AP-A0L9,16,16,+,+,12371893,11591880,12402411,11589757,CDS,NA,NA,8,19,18,Y,N
LRRFIP2,nc_chr3,UCEC,TCGA-AP-A0LH,3,3,-,-,37162983,37339940,37138350,37377657,CDS,NA,NA,4,8,13,Y,N
PARD3B,nc_chr2,UCEC,TCGA-BG-A0M6,2,2,+,-,205410842,200532192,205550469,200607401,CDS,NA,NA,6,10,1,Y,N
TMOD3,nc_chr4,UCEC,TCGA-D1-A16G,15,4,+,-,52155207,169061075,52160343,169062297,CDS,NA,NA,8,7,7,Y,N
SOGA1,MROH8,UCEC,TCGA-B5-A0K3,20,20,-,-,35412288,35743740,35411304,35746525,NA,CDS,NA,4,18,10,Y,N
GALNT11,GALNTL5,UCEC,TCGA-BK-A0CC,7,7,+,+,151798006,151668030,151799792,151665023,CDS,CDS,OOF,4,4,1,Y,N
SYNRG,nc_chr12,UCEC,TCGA-AJ-A23M,17,12,-,+,35936439,6894108,35935358,6893517,CDS,NA,NA,6,13,13,Y,N
SLIT2,nc_chr4,UCEC,TCGA-AP-A052,4,4,+,+,20555591,20766910,20563209,20748855,CDS,NA,NA,3,18,15,Y,N
TBC1D2B,nc_chr17,UCEC,TCGA-EY-A1GS,15,17,-,+,78369635,58050196,78366662,58045187,CDS,NA,NA,9,12,16,N,N
FXR1,nc_chr3,UCEC,TCGA-EY-A1GW,3,3,+,+,180671628,180465988,180673803,180465063,CDS,NA,NA,5,2,1,Y,N
DEPDC5,nc_chr14,UCEC,TCGA-B5-A0K3,22,14,+,-,32198824,105383627,32199898,105383682,CDS,NA,NA,4,17,12,Y,N
NBAS,nc_chr2,UCEC,TCGA-BS-A0V8,2,2,-,+,15691617,15822075,15685805,15821081,CDS,NA,NA,5,9,9,Y,N
HECTD4,nc_chr12,UCEC,TCGA-D1-A16G,12,12,-,-,112743868,112906540,112737783,112912150,CDS,NA,NA,4,4,6,Y,N
ZNF195,nc_chr12,UCEC,TCGA-E6-A1LZ,11,12,-,-,3400268,13039025,3396134,13067794,CDS,NA,NA,5,4,9,Y,N
TXNDC11,nc_chr16,UCEC,TCGA-AP-A053,16,16,-,-,11815433,12221923,11815357,12231194,CDS,NA,NA,4,15,15,Y,N
ZNF133,nc_chr20,UCEC,TCGA-AP-A0L9,20,20,+,+,18287037,52464562,18289030,52450765,CDS,NA,NA,5,13,14,Y,N
JUP,CAMTA2,UCEC,TCGA-AP-A0LI,17,17,-,-,39919235,4885455,39916408,4885610,CDS,CDS,IF,3,3,1,Y,N
PELI1,nc_chr2,UCEC,TCGA-B5-A0K3,2,2,-,-,64371215,64503717,64342139,64515518,UTR,NA,NA,6,15,8,N,N
HACE1,nc_chr6,UCEC,TCGA-EY-A1GC,6,6,-,-,105297017,105406343,105294385,105439203,CDS,NA,NA,3,5,1,Y,N
NPLOC4,SIRT7,UCEC,TCGA-AP-A053,17,17,-,-,79589192,79872406,79584079,79872880,CDS,CDS,OOF,5,14,3,N,N
TRAPPC9,TSNARE1,UCEC,TCGA-AP-A053,8,8,-,-,141231558,143310940,141077386,143343423,CDS,CDS,IF,4,7,15,Y,N
PPFIA1,nc_chr11,UCEC,TCGA-D1-A169,11,11,+,+,70179659,9336054,70180832,9329785,CDS,NA,NA,3,3,1,Y,N
MPZL1,RCSD1,UCEC,TCGA-AP-A053,1,1,+,+,167691479,167659286,167711658,167656046,CDS,CDS,OOF,3,14,7,Y,N
SHMT1,nc_chr3,UCEC,TCGA-AP-A05D,17,3,-,+,18250810,57241474,18248637,57236631,CDS,NA,NA,3,14,6,Y,N
ZNF121,nc_chr19,UCEC,TCGA-BS-A0U9,19,19,-,-,9695137,12196329,9690312,12197225,UTR,NA,NA,3,17,4,Y,N
GPR160,nc_chr3,UCEC,TCGA-D1-A17K,3,3,+,+,169756831,168427052,169772036,168370629,UTR,NA,NA,3,31,10,Y,N
XPO7,ZNF707,UCEC,TCGA-EO-A1Y8,8,8,+,+,21777299,144791423,21784559,144789171,CDS,NA,NA,3,46,30,Y,N
SRBD1,nc_chr2,UCEC,TCGA-AX-A06B,2,2,-,-,45807014,45876522,45806639,45876680,CDS,NA,NA,3,16,4,Y,N
CDC25C,ETF1,UCEC,TCGA-B5-A0K3,5,5,-,-,137664173,137854556,137662069,137870778,CDS,CDS,IF,3,15,5,Y,N
ST8SIA1,ITPR2,UCEC,TCGA-B5-A0K3,12,12,-,-,22401940,26492416,22384307,26493000,CDS,CDS,OOF,3,10,10,Y,N
WHSC1L1,nc_chr8,UCEC,TCGA-BK-A139,8,8,-,-,38196054,39281876,38195724,39286738,CDS,NA,NA,2,22,11,Y,N
ELK4,nc_chr1,UCEC,TCGA-BS-A0U9,1,1,-,+,205588085,206211184,205588022,206176281,CDS,NA,NA,1,15,12,Y,N
TNKS,nc_chr5,UCEC,TCGA-EO-A1Y8,8,5,+,+,9473187,2179994,9511429,2153668,CDS,NA,NA,2,45,28,Y,N
ATAD3A,nc_chr17,UCEC,TCGA-AX-A1C8,1,17,+,-,1455686,70590928,1457588,70594395,CDS,NA,NA,2,19,23,Y,N
TMEM141,nc_chr9,UCEC,TCGA-B5-A0K3,9,9,+,+,139686810,139331432,139689230,139330516,CDS,NA,NA,2,65,27,Y,N
KIF14,DDX59,UCEC,TCGA-FI-A2CY,1,1,-,-,200583446,200594175,200583272,200599973,CDS,NA,NA,2,4,1,Y,N
SLC9A8,nc_chr20,UCEC,TCGA-FI-A2CY,20,20,+,+,48472118,48375134,48476198,48354354,CDS,NA,NA,3,3,2,N,N
HUWE1,nc_chr4,UCEC,TCGA-BK-A139,X,4,-,-,53627078,55879328,53623548,55893664,CDS,NA,NA,86,22,11,Y,N
EP300,nc_chr3,UCEC,TCGA-AP-A0L9,22,3,+,-,41564603,122026508,41564709,122028300,CDS,NA,NA,22,27,18,Y,N
FOXP1,nc_chr7,UCEC,TCGA-D1-A1O0,3,7,-,-,71408301,34390459,71402885,34393918,UTR,NA,NA,12,10,1,Y,N
SIPA1L3,nc_chr17,UCEC,TCGA-AP-A05D,19,17,+,-,38397998,32517687,38493273,32548569,UTR,NA,NA,5,73,77,Y,N
GAREML,nc_chr20,UCEC,TCGA-D1-A17K,2,20,+,-,26399353,24431414,26404308,24431799,CDS,NA,NA,7,372,242,Y,N
PLEKHG1,nc_chr6,UCEC,TCGA-AP-A053,6,6,+,+,150971922,150820531,150989724,150815596,UTR,NA,NA,7,18,8,Y,N
SBNO2,nc_chr19,UCEC,TCGA-D1-A1NU,19,19,-,-,1147308,1211256,1131621,1212715,CDS,NA,NA,9,3,2,Y,N
CHD2,PDXK,UCEC,TCGA-D1-A1NU,15,21,+,+,93480855,45153950,93481818,45152672,CDS,CDS,OOF,7,62,35,Y,N
ATE1,NSMCE4A,UCEC,TCGA-E6-A1LZ,10,10,-,-,123681864,123716774,123673856,123717790,CDS,UTR,NA,5,2,2,Y,N
CCDC33,NEO1,UCEC,TCGA-FI-A2CY,15,15,+,+,74536489,73558657,74550506,73556115,CDS,CDS,OOF,5,7,1,Y,N
TMEM123,nc_chr11,UCEC,TCGA-D1-A1NU,11,11,-,-,102319543,102424696,102281907,102439410,CDS,NA,NA,90,17,8,Y,N
RBPMS,nc_chr8,UCEC,TCGA-E6-A1LZ,8,8,+,+,30242674,30580457,30257079,30574486,CDS,NA,NA,2,2,3,Y,N
THSD4,nc_chr8,UCEC,TCGA-DI-A1NN,15,8,+,-,71953073,128746205,72001319,128802930,CDS,NA,NA,1,53,11,Y,N
PALLD,nc_chr4,UCEC,TCGA-AP-A053,4,4,+,+,169633074,169412409,169784303,169339391,CDS,NA,NA,2,11,10,Y,N
TNFSF10,NCEH1,LUAD,TCGA-38-4630,3,3,-,-,172241043,172365904,172232274,172395015,CDS,CDS,IF,4,1,2,Y,N
UBL3,CKAP2,BLCA,TCGA-BL-A3JM,13,13,-,+,30423649,53030658,30421963,53024294,CDS,CDS,OOF,108,3,1,N,Y
WDR62,HCST,BLCA,TCGA-BT-A3PH,19,19,+,+,36575646,36394253,36576328,36391447,CDS,CDS,IF,52,11,1,N,Y
FZD6,nc_chr8,BLCA,TCGA-DK-A1AE,8,8,+,-,104312512,110056356,104322781,110185684,CDS,NA,NA,30,17,7,Y,N
DYNC2H1,C11orf70,BLCA,TCGA-C4-A0F0,11,11,+,+,102999734,101918546,103000530,101907105,CDS,CDS,OOF,20,110,7,Y,Y
GALNT18,IER3IP1,BLCA,TCGA-DK-A3IN,11,18,-,-,11454168,44683908,11436293,44730626,CDS,CDS,IF,30,7,1,N,Y
nc_chr6,MBOAT1,BLCA,TCGA-FD-A3SJ,6,6,+,-,22020771,20153000,22024694,20232920,NA,CDS,NA,10,37,4,N,Y
PTEN,nc_chr9,BLCA,TCGA-CF-A3MH,10,9,+,+,89693008,8401186,89712994,8251417,CDS,NA,NA,12,5,1,Y,N
SHPRH,NDUFS5,BLCA,TCGA-GD-A2C5,6,1,-,+,146285293,39494395,146284765,39479965,NA,UTR,NA,329,107,31,Y,Y
NFIX,nc_chr19,BRCA,TCGA-B6-A0I1,19,19,+,+,13184310,13035888,13184717,13032231,CDS,NA,NA,78,5,1,Y,N
MROH1,CYC1,BRCA,TCGA-BH-A0H7,8,8,+,+,145202979,145151027,145214297,145140849,UTR,CDS,NA,78,6,1,Y,Y
RALBP1,TWSG1,BRCA,TCGA-D8-A27H,18,18,+,+,9475174,9337191,9478707,9328515,NA,UTR,NA,55,21,6,Y,Y
RARA,MYO1D,BRCA,TCGA-A8-A09I,17,17,+,-,38487648,31107802,38504381,31205294,CDS,CDS,OOF,82,18,12,N,Y
ALCAM,EIF2A,BRCA,TCGA-C8-A12L,3,3,+,+,105086325,150270143,105089099,150250555,CDS,CDS,IF,89,5,12,N,Y
KLHL21,nc_chr1,BRCA,TCGA-C8-A12Q,1,1,-,+,6655545,7993270,6651233,7965358,CDS,NA,NA,32,7,6,Y,N
ZMAT3,nc_chr3,BRCA,TCGA-A2-A04P,3,3,-,+,178789383,178174402,178787847,178042943,UTR,NA,NA,49,225,79,N,N
GABPB2,OR10J1,BRCA,TCGA-AR-A24Z,1,1,+,+,151070478,159409566,151074251,159382854,CDS,NA,NA,47,33,9,N,Y
ARFGEF2,CNIH2,BRCA,TCGA-BH-A0H6,20,11,+,+,47558524,66049730,47562409,66043997,CDS,CDS,IF,43,30,6,N,Y
LASP1,ARHGAP23,BRCA,TCGA-A8-A07I,17,17,+,+,37026511,36614346,37033992,36560430,CDS,CDS,IF,35,6,4,N,Y
ATP11A,nc_chr13,BRCA,TCGA-GM-A2DF,13,13,+,-,113344769,98719300,113372499,98820615,CDS,NA,NA,30,27,14,N,N
BCR,MRVI1,BRCA,TCGA-C8-A12Q,22,11,+,-,23524426,10673729,23528917,10718734,CDS,CDS,IF,22,13,4,N,Y
nc_chr17,ORAOV1,BRCA,TCGA-BH-A18R,17,11,+,-,29096983,69488089,29097732,69492600,NA,CDS,NA,17,51,24,N,Y
URI1,IFNL1,BRCA,TCGA-A2-A3XX,19,19,+,+,30433571,39787445,30473159,39783341,CDS,CDS,IF,10,9,6,Y,Y
RALGPS1,TYRP1,BRCA,TCGA-A2-A0D0,9,9,+,+,129728230,12693912,129738449,12648322,CDS,UTR,NA,15,4,9,N,Y
SPOP,XYLT2,BRCA,TCGA-A8-A07I,17,17,-,+,47755295,48430991,47726729,48398802,UTR,CDS,NA,13,26,12,N,Y
CDC6,RNFT1,BRCA,TCGA-E2-A15H,17,17,+,-,38457282,58040645,38457468,58049030,CDS,CDS,OOF,12,48,14,N,Y
CD9,nc_chr12,BRCA,TCGA-B6-A0RE,12,1,+,-,6309731,155021837,6333990,155030306,CDS,NA,NA,11,5,1,N,N
nc_chr8,ZFHX4,BRCA,TCGA-E2-A14X,8,8,-,+,77218573,77616278,77167679,77567421,NA,UTR,NA,7,10,3,N,Y
CACNB1,CDC6,BRCA,TCGA-AR-A0TX,17,17,-,+,37351137,38445660,37347806,38439380,CDS,UTR,NA,6,19,1,N,Y
SRBD1,CCDC88A,BRCA,TCGA-A7-A26G,2,2,-,-,45704132,55646052,45667282,55670179,CDS,CDS,IF,5,9,1,N,Y
nc_chr6,HBS1L,BRCA,TCGA-C8-A12Q,6,6,+,-,135819138,135371785,135825012,135376368,NA,CDS,NA,5,9,1,N,Y
INTS9,PHYHIP,BRCA,TCGA-E2-A15K,8,8,-,-,28692809,22089516,28686803,22090221,CDS,NA,NA,5,18,11,N,Y
PRDM11,ACCS,BRCA,TCGA-EW-A3U0,11,11,+,+,45204674,44089178,45211682,44085183,CDS,CDS,IF,3,19,2,N,Y
RARA,PRR11,BRCA,TCGA-A2-A0YG,17,17,+,+,38474700,57247109,38479917,57208133,UTR,UTR,NA,2736,76,12,Y,Y
RARA,ZNF595,BRCA,TCGA-AR-A0TX,17,4,+,+,38487648,59323,38499109,41610,CDS,CDS,OOF,224,72,34,N,Y
MYH9,NFYC,BRCA,TCGA-B6-A0IJ,22,1,-,+,36783852,41204508,36780695,41139923,UTR,UTR,NA,248,24,8,N,Y
ABTB2,APIP,BRCA,TCGA-AR-A256,11,11,-,-,34186233,34916657,34185863,34955978,CDS,CDS,OOF,9,41,13,N,Y
MPRIP,nc_chr20,BRCA,TCGA-E2-A109,17,20,+,+,17077389,6078064,17078277,6047028,CDS,NA,NA,67,15,6,Y,N
PDE4B,MOB3C,BRCA,TCGA-AR-A24Z,1,1,+,-,66731770,47079043,66767618,47096857,CDS,CDS,IF,7,15,1,Y,Y
ZNF816,ERGIC3,BRCA,TCGA-AO-A03L,19,20,-,+,53445794,34130072,53438871,34122132,NA,CDS,NA,23,15,7,Y,Y
PTPRK,RSPO3,COADREAD,TCGA-QG-A5YX,6,6,-,+,128841404,127469793,128806269,127429649,CDS,CDS,IF,49,85,19,N,Y
ELMO1,BLVRA,GBM,TCGA-32-1970,7,7,-,+,37488278,43810737,37408612,43773991,UTR,UTR,NA,2,12,6,Y,Y
TBC1D30,PPM1H,GBM,TCGA-19-2624,12,12,+,-,65232631,63226059,65243278,63339934,CDS,CDS,IF,13,4,2,Y,Y
NFASC,SOX13,GBM,TCGA-06-0157,1,1,+,+,204797910,204082043,204826290,204034015,UTR,UTR,NA,53,583,197,Y,Y
RNH1,HRAS,HNSC,TCGA-CR-7382,11,11,-,-,507113,533944,502119,552663,UTR,CDS,NA,68,69,18,Y,Y
PANX1,KIAA1377,HNSC,TCGA-CQ-6228,11,11,+,+,93886796,101814996,93907179,101753831,CDS,CDS,OOF,45,758,193,Y,Y
nc_chr5,TERT,KICH,TCGA-KL-8341,5,5,-,-,1117450,1282739,1116986,1296149,NA,CDS,NA,45,87,11,Y,Y
SFPQ,TFE3,KIRC,TCGA-BP-4756,1,X,-,-,35654604,48898095,35654156,48915882,CDS,CDS,IF,386,93,13,N,Y
LIN9,KDM5B,LGG,TCGA-CS-5395,1,1,-,-,226465476,202746222,226460603,202793723,CDS,CDS,OOF,17,191,59,N,Y
ETV6,nc_chr12,LGG,TCGA-DU-7007,12,12,+,-,11905513,26384918,11952550,26406283,CDS,NA,NA,68,3,1,Y,N
SPINT2,DPF1,LUAD,TCGA-50-6594,19,19,+,-,38755638,38713348,38758404,38741467,CDS,CDS,OOF,82,17,2,N,Y
METTL24,SLC22A16,LUAD,TCGA-38-4630,6,6,-,-,110620125,110778220,110584348,110800062,CDS,CDS,OOF,28,6,4,N,Y
POLR2F,MICALL1,LUAD,TCGA-38-4630,22,22,+,+,38349814,38307959,38350797,38295719,CDS,CDS,IF,14,28,5,N,Y
ADAM9,RNF170,LUAD,TCGA-50-5933,8,8,+,-,38854679,42743014,38864078,42766316,CDS,UTR,NA,12,9,1,N,Y
PDS5B,CD3EAP,LUAD,TCGA-50-6591,13,19,+,+,33160730,45909563,33164322,45896054,UTR,NA,NA,5,13,4,Y,Y
GIPC1,DNAJB1,LUAD,TCGA-73-4666,19,19,-,-,14606849,14638622,14604145,14645551,UTR,NA,NA,6,7,2,N,Y
ARMC7,CYB561,LUAD,TCGA-78-7146,17,17,+,-,73106701,61514921,73115949,61524649,CDS,UTR,NA,4,32,8,N,Y
EIF4H,ELN,LUAD,TCGA-38-4630,7,7,+,+,73604248,73449694,73607887,73438433,CDS,CDS,IF,220,15,6,Y,Y
GMPS,C3orf55,LUSC,TCGA-66-2766,3,3,+,+,155588686,157271019,155599717,157230574,CDS,UTR,NA,303,42,7,N,Y
TMX3,METTL4,LUSC,TCGA-21-1083,18,18,-,-,66378601,2567653,66377477,2574805,CDS,UTR,NA,43,28,6,N,Y
TRIM28,ZBTB45,LUSC,TCGA-21-1082,19,19,+,-,59056464,59029040,59057404,59033720,CDS,CDS,OOF,23,26,3,N,Y
ZC3H3,PYCRL,LUSC,TCGA-66-2793,8,8,-,-,144618427,144690296,144614415,144692150,CDS,CDS,IF,21,21,11,N,Y
SBF2,MRVI1,LUSC,TCGA-66-2744,11,11,-,-,10215449,10655618,10195192,10744525,CDS,CDS,IF,14,30,13,N,Y
MAP3K13,nc_chr3,LUSC,TCGA-18-3408,3,3,+,-,185184751,179051194,185188715,179057511,CDS,NA,NA,12,264,56,N,N
BRAF,MRPS33,LUSC,TCGA-66-2744,7,7,-,-,140624366,140710460,140600768,140743782,CDS,UTR,NA,6,22,6,Y,Y
CABIN1,nc_chr22,LUSC,TCGA-96-7545,22,22,+,+,24407817,27003786,24429982,26992378,UTR,NA,NA,6,20,14,Y,N
UHRF1BP1,nc_chr6,LUSC,TCGA-43-5670,6,6,+,+,34835393,34555150,34837757,34546252,CDS,NA,NA,8,7,4,N,N
WASF2,FGR,LUSC,TCGA-66-2759,1,1,-,-,27816497,27951662,27794096,27986417,UTR,UTR,NA,8,15,2,N,Y
DST,TRIM38,LUSC,TCGA-60-2711,6,6,-,+,56707853,25963277,56662273,25953253,NA,UTR,NA,4,12,3,N,Y
PLAA,RUSC2,LUSC,TCGA-66-2756,9,9,-,+,26946895,35546427,26941935,35528606,CDS,UTR,NA,4,53,6,N,Y
TBL1XR1,PIK3CA,PRAD,TCGA-EJ-5507,3,3,-,+,176914909,178916538,176842100,178851115,UTR,UTR,NA,13,6,2,N,Y
UTRN,PLAGL1,PRAD,TCGA-CH-5741,6,6,+,-,144864006,144306311,144868700,144386554,CDS,UTR,NA,6,3,1,N,Y
SSH1,SART3,PRAD,TCGA-CH-5790,12,12,-,-,109200077,108942990,109199111,108963722,CDS,CDS,IF,3,2,1,N,Y
TMPRSS2,ETV4,PRAD,TCGA-G9-6371,21,17,-,-,42880008,41622735,42876705,41634784,UTR,CDS,NA,1395,3,1,N,Y
TMPRSS2,IRS2,PRAD,TCGA-HI-7171,21,13,-,-,42860321,110408655,42855648,110440568,CDS,CDS,IF,757,4,1,Y,Y
ZNF136,XAB2,SKCM,TCGA-DA-A1I0,19,19,+,-,12274021,7693184,12285927,7695023,CDS,CDS,IF,44,29,7,Y,Y
CALD1,SLC41A1,SKCM,TCGA-FS-A1ZU,7,1,+,-,134576424,205780215,134581902,205786034,CDS,UTR,NA,67,49,7,N,Y
PHF20,nc_chr20,SKCM,TCGA-FS-A1ZE,20,20,+,+,34519366,38339391,34523499,38190432,CDS,NA,NA,31,77,3,Y,N
MED1,KRT222,SKCM,TCGA-ER-A2NF,17,17,-,-,37604051,38818296,37600486,38826234,CDS,CDS,IF,33,6,2,N,Y
8-Mar,nc_chr10,SKCM,TCGA-D3-A1Q5,10,10,-,+,45984815,58072022,45984687,57943238,CDS,NA,NA,14,39,19,Y,N
CPT1A,nc_chr11,SKCM,TCGA-ER-A19T,11,11,-,-,68609243,87209632,68587860,87340888,UTR,NA,NA,18,47,11,N,N
SNTB1,nc_chr8,SKCM,TCGA-ER-A19L,8,8,-,-,121823513,122762010,121754023,122908813,CDS,NA,NA,7,17,5,Y,N
FRS2,RAB3IP,SKCM,TCGA-D9-A1X3,12,12,+,+,69925836,70144526,69955820,70131494,UTR,NA,NA,5,37,1,N,Y
PTCD3,nc_chr2,SKCM,TCGA-EE-A185,2,2,+,+,86333474,86260361,86335447,86208856,CDS,NA,NA,3,12,5,N,N
KIAA1755,CNBD2,SKCM,TCGA-FS-A1ZE,20,20,-,+,36851940,34560551,36849505,34544196,CDS,CDS,IF,3,24,3,N,Y
GAB2,FGF7,SKCM,TCGA-ER-A19T,11,15,-,+,77961203,49775348,77955232,49669236,CDS,CDS,OOF,78,43,11,Y,Y
PAX8,GLIS1,THCA,TCGA-BJ-A291,2,1,-,-,114035947,54065951,114014458,54225955,CDS,UTR,NA,98,6,1,N,Y
SLC25A13,SHFM1,UCEC,TCGA-AP-A05A,7,7,-,-,95926210,96324203,95918007,96352040,CDS,CDS,OOF,12,9,4,Y,Y
PHF12,SEZ6,UCEC,TCGA-B5-A0K3,17,17,-,-,27254009,27309057,27253074,27341629,CDS,CDS,OOF,9,22,3,Y,Y
FMNL2,GPBAR1,UCEC,TCGA-D1-A17K,2,2,+,+,153437563,219127403,153453586,219123163,CDS,UTR,NA,12,22,10,Y,Y
ELMSAN1,FAM161B,UCEC,TCGA-D1-A16G,14,14,-,-,74203701,74413308,74203108,74423554,CDS,CDS,IF,7,6,1,N,Y
FAM102A,PTGES2,UCEC,TCGA-D1-A16G,9,9,-,-,130742271,130887720,130738481,130915975,CDS,CDS,OOF,6,5,3,Y,Y
LRWD1,CCDC107,UCEC,TCGA-EO-A1Y8,7,9,+,+,102106717,35658573,102108153,35619132,CDS,CDS,OOF,4,32,16,Y,Y
FLNB,FGR,UCEC,TCGA-D1-A16G,3,1,+,-,58098045,27951662,58102504,27962680,CDS,UTR,NA,5,12,2,N,Y
CYTH3,FAM220A,UCEC,TCGA-BK-A139,7,7,-,-,6312105,6370866,6290043,6392807,CDS,UTR,NA,4,3,2,N,Y
RBPMS,UBXN8,UCEC,TCGA-E6-A1LZ,8,8,+,+,30242674,30601845,30257079,30574486,CDS,NA,NA,2,2,1,Y,Y
UBR5,DRD4,UCEC,TCGA-BS-A0U9,8,11,-,+,103424401,639433,103392356,629557,CDS,CDS,OOF,4,22,3,Y,Y
SPTAN1,SLC27A4,UCEC,TCGA-D1-A1NU,9,9,+,+,131329256,131105406,131329806,131101173,CDS,UTR,NA,11,12,3,Y,Y