Supplemental Materials and Methods: decontamination and de novo assembly of Ridgeia symbiont genomes (first assembly and data quality assessment, decontamination, de novo assembly); accessory genome exclusive to Ridgeia symbionts (Table S1); accessory genome exclusive to the East Pacific Rise symbionts (Table S2); accessory genome found in Riftia symbionts (Table S3); accessory genome found in 9°N symbionts (Table S4); orthologous sequences for genes of particular interest (Table S5).
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List of 2,313 putative orthologous protein-encoding genes among Ridgeia 1, Ridgeia 2, Tevnia, Riftia 1, and Rifita 2 symbiont genome assemblies, pairwise nucleotide and protein identity, dN and dS values, and dN/dS ratios (Data Set S1).
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