{"text_format":"2","workbook":"xlsx","n_sheets":4,"sheets":["Misassembled_segments","Part_misassembled_contig","Description_part_misassembled_contig","Misplaced_snps"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":0,"defined_names":0,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"Misassembled_segments","index":0,"n_rows":248,"n_cols":17,"rows_kept":248,"cut":false,"hidden":false,"merged":[]}
["Alias","CHR_A","BP_A_start","BP_A_end","seglen","CHR_B","BP_B_star_nel","BP_B_end_nel","BP_B_start_hol","BP_B_end_hol","tncont","tnseqcont","tnsnps","nnelsnps","nholsnps",null,"Description of the columns"]
["R1",1,44507685,44801390,293705,1,156813248,157392878,156984543,156776448,21,11,98,81,83]
["R2",1,44837128,45130787,293659,1,157408686,154947815,156771559,155104060,19,10,94,60,55,null,"CHR_A = Current chromosome"]
["R3",1,45146319,45206037,59718,27,45372915,45341204,45271230,45271230,5,3,20,11,14,null,"BP_A_start = current starting base pair position of the segment"]
["R4",1,47060938,47073191,12253,18,63164090,63164090,63388988,63388988,1,1,2,1,1,null,"BP_A_end = current ending base pair position of the segment"]
["R5",1,52458192,52466112,7920,4,-9,-9,68333258,68333258,1,1,1,0,1,null,"seglen = segment length"]
["R6",1,60578448,60664293,85845,1,5968730,4008972,593068,644161,11,6,34,18,30,null,"CHR_B = Estimated chromosome"]
["R7",1,62160168,62173729,13561,13,42926916,42926916,44703187,44703187,1,1,3,1,2,null,"BP_B_start_nel = estimated starting base pair position of the segment in Nellore"]
["R8",1,82940221,82941440,1219,1,155419326,155419326,155419326,155419326,1,1,1,1,1,null,"BP_A_end_nel  = estimated ending base pair position of the segment in Nellore"]
["R9",1,85755693,85769160,13467,4,7068066,6998632,7031374,7034104,1,1,4,4,4,null,"BP_B_start_hol = estimated starting base pair position of the segment in Holstein"]
["R10",1,88322835,88354289,31454,1,142443465,142473820,142460382,142437080,7,4,5,5,3,null,"BP_A_end_holl  = estimated ending base pair position of the segment in Holstein"]
["R11",1,94487079,94497655,10576,2,7985920,7985920,-9,-9,1,1,3,2,0,null,"tncont = total number of contigs in the segment"]
["R12",1,94550376,94569370,18994,2,8027738,8025414,7971828,7971828,1,1,6,4,2,null,"tnseqcont = total number of sequence contigs in the segment"]
["R13",1,95095359,95216573,121214,23,30144936,30644338,30122093,30087140,1,1,52,40,45,null,"tnsnps = total number of SNPs in the segment"]
["R14",1,98471943,98508911,36968,4,1444016,1086715,1257623,1142008,11,6,13,7,11,null,"nholsnps = number of SNPs present in Holstein after filtering the data"]
["R15",1,107558346,107570195,11849,1,84828092,64395146,64389976,64389976,3,2,8,7,7,null,"nnelsnps = number of SNPs present in Nellore after filtering the data"]
["R16",1,111624254,111657277,33023,8,113311066,113311066,113172992,113057152,1,1,12,8,8]
["R17",1,121429483,121452913,23430,7,15409650,15409650,15476020,15496480,1,1,7,4,7]
["R18",1,130542036,130566788,24752,2,122154494,122154494,-9,-9,1,1,9,1,0,null,"-9 represents missing values"]
["R19",1,137979734,137980534,800,3,63387267,63387267,-9,-9,1,1,1,1,0]
["R20",1,138430561,138828418,397857,1,158313115,156756463,155618038,154862130,29,15,125,98,117]
["R21",1,152980257,152981875,1618,21,71411274,71411274,-9,-9,1,1,1,1,0]
["R22",1,153219189,153222591,3402,14,62343076,62343076,62346378,62346378,1,1,1,1,1]
["R23",1,154425655,154428849,3194,6,18672406,18672406,18617648,18617648,1,1,1,1,1]
["R24",2,513008,514764,1756,15,-9,-9,57377715,57377715,1,1,1,0,1]
["R25",2,60019097,60060716,41619,2,77153652,77191150,77190395,77076304,5,3,15,3,12]
["R26",2,60202426,60219502,17076,2,77191150,77132545,77082594,77065620,1,1,5,3,2]
["R27",2,65035189,65040502,5313,4,7650252,7653422,7654220,7655940,3,2,4,4,4]
["R28",2,99244386,99249665,5279,10,38410258,38410258,37528566,37528566,1,1,1,1,1]
["R29",2,110788577,110799585,11008,2,135121038,135005556,135133270,135133270,1,1,3,3,1]
["R30",3,5351144,5352877,1733,1,139755828,139755828,139687182,139687182,1,1,1,1,1]
["R31",3,8914006,8967656,53650,3,31608622,32114235,32078727,32112177,1,1,22,10,19]
["R32",3,29578293,29606397,28104,5,41353906,41453535,41486791,41486791,1,1,7,7,6]
["R33",3,35509336,35510251,915,4,-9,-9,118796496,118796496,1,1,1,0,1]
["R34",3,65340694,65342165,1471,27,1331612,1331612,1318452,1318452,1,1,1,1,1]
["R35",3,77187793,77189245,1452,19,-9,-9,40184048,40184048,1,1,1,0,1]
["R36",4,1,1292,1291,25,-9,-9,28004368,28004368,1,1,1,0,1]
["R37",4,945828,971820,25992,6,114616924,114616924,114578852,114848747,1,1,12,1,12]
["R38",4,986300,1013372,27072,6,114595425,115449166,114598640,114598640,5,3,10,2,10]
["R39",4,15846549,15854805,8256,9,3234038,3234038,3212320,3212320,1,1,1,1,1]
["R40",4,24796163,24806540,10377,21,17086320,17087850,16659102,17092672,1,1,6,6,6]
["R41",4,76768224,76779377,11153,7,42664703,42664703,42663806,42663806,1,1,1,1,1]
["R42",4,83262648,83266175,3527,20,62424906,62424906,-9,-9,1,1,1,1,0]
["R43",4,90634062,90636990,2928,6,6669519,6669519,-9,-9,1,1,1,1,0]
["R44",4,94049888,94050928,1040,23,-9,-9,18228186,18228186,1,1,1,0,1]
["R45",4,96767494,96830911,63417,15,50130459,50460235,53864194,50501412,1,1,24,21,23]
["R46",5,54057723,54080833,23110,3,13471332,13525342,13471332,13471332,1,1,3,3,3]
["R47",5,60040059,60040738,679,5,25629390,25629390,-9,-9,1,1,1,1,0]
["R48",5,107330401,107332059,1658,3,17716765,17716765,17608686,17608686,1,1,1,1,1]
["R49",5,109138842,109146160,7318,7,35200188,35200188,-9,-9,1,1,1,1,0]
["R50",5,110274825,110276378,1553,20,45767720,45767720,45599586,45599586,1,1,1,1,1]
["R51",5,115177953,115197076,19123,7,114442,114442,1009706,1009706,1,1,2,1,1]
["R52",5,117340008,117377230,37222,23,-9,-9,26746503,26746503,1,1,6,0,1]
["R53",6,4072883,4081212,8329,17,261404,261404,257184,271016,1,1,2,1,2]
["R54",6,36740610,36759717,19107,17,30659684,30659684,30567857,30667299,1,1,8,8,5]
["R55",6,47459966,47462095,2129,7,-9,-9,112399874,112399874,1,1,1,0,1]
["R56",6,52090733,52094365,3632,18,3960267,3960267,3985296,3985296,1,1,1,1,1]
["R57",6,58273175,58275194,2019,17,66691188,66691188,66650800,66650800,1,1,1,1,1]
["R58",6,106491889,107333793,841904,6,118399532,117543556,119420242,118481179,79,40,269,184,206]
["R59",6,107642282,107663204,20922,6,118452094,119160262,116470392,117596376,7,4,4,2,2]
["R60",6,107663404,108041671,378267,6,119257687,117557922,117400354,119325504,27,14,117,68,95]
["R61",6,108046882,108105853,58971,6,118300833,117543556,119160838,118785879,3,2,12,6,8]
["R62",6,108108653,108234538,125885,6,117543556,117543556,116779502,119325504,5,3,38,13,34]
["R63",6,108235627,108530274,294647,6,119246936,117979431,119237267,119217711,13,7,75,29,58]
["R64",6,108556755,108664218,107463,6,118529829,117282325,118665057,118388957,1,1,64,49,60]
["R65",6,108665599,108911429,245830,6,117282325,113884637,117962468,117376350,23,12,68,38,41]
["R66",6,108914568,108947058,32490,6,119093850,118280904,117686182,119217190,3,2,8,7,2]
["R67",6,108949740,109067861,118121,6,119327624,118641156,119293585,119217190,11,6,44,29,31]
["R68",6,109071939,109122416,50477,6,118280904,119145368,118387226,119217190,5,3,12,9,6]
["R69",6,109127658,109297676,170018,6,119344480,118281262,119217190,118271177,7,4,37,29,9]
["R70",6,109301849,109315290,13441,6,119335420,119335420,117131196,117131196,1,1,1,1,1]
["R71",6,109317280,109384583,67303,6,119335420,119335420,118271177,117061087,1,1,17,14,12]
["R72",6,109392644,109398921,6277,6,-9,-9,117131196,117131196,1,1,2,0,1]
["R73",6,109400024,109423835,23811,6,118641985,119335420,118271177,119052728,1,1,7,6,2]
["R74",6,109425311,109426613,1302,6,117790753,117790753,-9,-9,1,1,1,1,0]
["R75",6,109433598,109487471,53873,6,119327624,119074412,118221446,118232524,3,2,9,7,2]
["R76",6,109490846,109517591,26745,6,118786104,118786104,118221446,118221446,5,3,6,5,3]
["R77",6,109520805,109665393,144588,6,115857936,118935888,118221446,117899383,3,2,23,14,18]
["R78",6,109667191,109750998,83807,6,114286064,114286064,118271177,118150164,5,3,13,8,9]
["R79",6,109754419,109870451,116032,6,114286064,118410630,118150164,118386934,9,5,25,20,19]
["R80",6,110254214,110258097,3883,19,49139840,49023484,49060978,49060978,1,1,3,3,3]
["R81",7,287888,328312,40424,5,99521128,99524127,99933746,100714274,1,1,9,7,7]
["R82",7,343645,346066,2421,5,99458714,99458714,100489316,100489316,1,1,1,1,1]
["R83",7,4756257,4757528,1271,2,-9,-9,129369094,129369094,1,1,1,0,1]
["R84",7,26257037,26262808,5771,3,60334378,60334378,-9,-9,1,1,2,1,0]
["R85",7,44669000,44706954,37954,7,-9,-9,24068204,24068204,1,1,6,0,1]
["R86",7,44828989,44831339,2350,7,24466188,24466188,24678472,24678472,1,1,1,1,1]
["R87",7,54840950,55042133,201183,23,184475,184475,3193652,6596935,3,2,22,12,9]
["R88",7,58968299,58978987,10688,23,2424946,3082971,-9,-9,1,1,2,2,0]
["R89",7,58979088,58997625,18537,23,184475,184475,2089641,2089641,1,1,2,1,1]
["R90",7,61652591,61659369,6778,20,58104042,58090256,58160727,58161282,1,1,8,3,5]
["R91",7,95630114,95631955,1841,27,8955084,8955084,8955084,8955084,1,1,1,1,1]
["R92",7,99832651,99834600,1949,13,64981918,64981918,64978040,64978040,1,1,1,1,1]
["R93",7,103359604,103362450,2846,3,-9,-9,102649733,102649733,1,1,1,0,1]
["R94",7,104778533,104779670,1137,22,40314130,40314130,40291787,40291787,1,1,1,1,1]
["R95",7,108604336,108607831,3495,3,5854176,5854176,-9,-9,1,1,1,1,0]
["R96",8,2085775,2086794,1019,20,43344830,43344830,43445904,43445904,1,1,1,1,1]
["R97",8,2145652,2149753,4101,15,46662289,46662289,-9,-9,1,1,1,1,0]
["R98",8,38275819,38281660,5841,7,42664703,42664703,42663806,42663806,1,1,1,1,1]
["R99",8,41439850,41440845,995,10,83285797,83285797,-9,-9,1,1,1,1,0]
["R100",8,44632903,44633631,728,1,73631548,73631548,-9,-9,1,1,1,1,0]
["R101",8,49840196,49842279,2083,3,118763884,118763884,-9,-9,1,1,1,1,0]
["R102",8,71495656,71497137,1481,5,26114180,26114180,-9,-9,1,1,1,1,0]
["R103",8,75864942,75868612,3670,10,42273734,42273734,42263388,42263388,1,1,3,3,3]
["R104",8,79240195,79260341,20146,11,26517976,26517976,26430036,26410984,3,2,4,2,2]
["R105",8,89710204,89711529,1325,12,70464240,70464240,72598420,72598420,1,1,1,1,1]
["R106",8,90361192,90364882,3690,16,69502770,69502770,69397927,69397927,1,1,1,1,1]
["R107",8,91533296,91535245,1949,3,20898180,20898180,20993374,20993374,1,1,1,1,1]
["R108",8,96213572,96217116,3544,2,-9,-9,13133737,13133737,1,1,1,0,1]
["R109",9,1115838,1118198,2360,3,76864544,76864544,-9,-9,1,1,1,1,0]
["R110",9,2723570,2734118,10548,19,62441659,62232258,-9,-9,1,1,2,2,0]
["R111",9,5764220,5765883,1663,6,83320652,83320652,83289830,83289830,1,1,1,1,1]
["R112",9,41642708,41645941,3233,28,1547606,1547606,1450215,1450215,1,1,1,1,1]
["R113",9,44473027,44477063,4036,23,-9,-9,50055908,50055908,1,1,1,0,1]
["R114",9,49042263,49049915,7652,15,11254980,11254980,11234376,11234376,1,1,1,1,1]
["R115",9,49835978,49840449,4471,29,27269027,27269027,27295528,27292852,1,1,4,3,2]
["R116",9,52239332,52253705,14373,16,58464224,57056164,57980702,58723277,1,1,3,2,3]
["R117",9,52330587,52364742,34155,16,58409782,58464224,58612777,58261842,1,1,12,8,9]
["R118",9,52566772,52570326,3554,15,-9,-9,51520208,51520208,1,1,2,0,1]
["R119",9,63118191,63119136,945,23,27706455,27706455,27599274,27599274,1,1,1,1,1]
["R120",9,65866045,65874105,8060,7,114442,114442,-9,-9,1,1,1,1,0]
["R121",9,67005668,67010632,4964,3,102699936,102701140,102740116,102740116,1,1,2,2,1]
["R122",9,67958223,67960282,2059,19,2869387,2869387,2867737,2867737,1,1,2,1,2]
["R123",9,72815022,72818463,3441,16,15419759,15419759,15412743,15412743,1,1,1,1,1]
["R124",9,76120112,76121875,1763,12,70529880,70529880,-9,-9,1,1,1,1,0]
["R125",9,79735709,79769509,33800,26,51631063,51647957,50722756,51203192,9,5,8,7,4]
["R126",9,82651690,82653631,1941,23,424904,424904,480942,480942,1,1,1,1,1]
["R127",9,83681491,83682537,1046,9,19079428,19079428,19075774,19075774,1,1,1,1,1]
["R128",9,88651830,88659371,7541,4,-9,-9,55646508,55646508,1,1,4,0,3]
["R129",9,90479047,90480094,1047,18,49592642,49592642,49496094,49496094,1,1,1,1,1]
["R130",9,91190667,91220393,29726,23,-9,-9,2467921,2089641,1,1,2,0,2]
["R131",9,91228594,91240465,11871,23,864636,1373530,2089641,2089641,1,1,3,2,1]
["R132",9,91240566,91295668,55102,23,78840,184475,2089641,2089641,1,1,12,6,7]
["R133",9,91295769,91342403,46634,23,579656,201638,2089641,2467921,1,1,10,3,4]
["R134",9,91663192,91666257,3065,16,54670446,54656454,54654108,54707854,1,1,2,2,2]
["R135",9,94294280,94296328,2048,19,58403465,58403465,58724162,58724162,1,1,1,1,1]
["R136",9,96968366,96970120,1754,4,-9,-9,41403380,41403380,1,1,1,0,1]
["R137",9,98101119,98102533,1414,15,83433514,83433514,-9,-9,1,1,1,1,0]
["R138",9,100275048,100300918,25870,23,184475,184475,2089641,2089641,1,1,4,4,2]
["R139",9,100306167,100322071,15904,23,-9,-9,2089641,2089641,1,1,3,0,2]
["R140",9,103343497,103355114,11617,4,83779468,83930350,83777864,83815332,1,1,5,5,5]
["R141",9,104019930,104053005,33075,23,184475,184475,6596935,2089641,1,1,6,4,5]
["R142",10,9619857,9620972,1115,7,109397478,109397478,109241632,109241632,1,1,1,1,1]
["R143",10,21148520,21149589,1069,21,34742124,34742124,34475598,34475598,1,1,1,1,1]
["R144",10,24165651,24169128,3477,21,-9,-9,32632746,32632746,1,1,1,0,1]
["R145",10,29761343,29767262,5919,4,117732110,117640187,117815653,117809076,1,1,3,3,3]
["R146",10,41555888,41571632,15744,3,6438309,6448602,6253716,6574572,5,3,4,4,4]
["R147",10,45361360,45366344,4984,1,-9,-9,136128512,136128512,1,1,1,0,1]
["R148",10,60192840,60212611,19771,10,-9,-9,23863612,23863612,1,1,6,0,6]
["R149",10,87207341,87806376,599035,7,112359188,112582022,110615306,112399874,29,15,143,106,118]
["R150",10,89304840,89306397,1557,1,155410402,155410402,155411501,155411501,1,1,1,1,1]
["R151",10,89318840,89320542,1702,11,17732068,17732068,17628255,17628255,1,1,1,1,1]
["R152",11,14301842,14306561,4719,21,3680102,3680102,21495646,21495646,1,1,1,1,1]
["R153",11,43128807,43129498,691,11,10647916,10647916,10588642,10588642,1,1,1,1,1]
["R154",11,50404231,50421316,17085,16,50144122,50118391,49647140,49647140,1,1,5,4,2]
["R155",11,79420323,79434835,14512,6,50746264,50749986,50502960,50287432,1,1,5,3,3]
["R156",12,16341013,16342436,1423,17,4779574,4779574,4749640,4749640,1,1,1,1,1]
["R157",12,20385211,20387042,1831,4,3420020,3420020,1326669,1326669,1,1,1,1,1]
["R158",12,28109356,28110185,829,5,119934529,119934529,119320750,119320750,1,1,1,1,1]
["R159",12,32162421,32199628,37207,12,-9,-9,75033850,70788275,1,1,4,0,3]
["R160",13,3774829,3776246,1417,13,33980866,33980866,33904434,33904434,1,1,1,1,1]
["R161",13,5062061,5065758,3697,9,16578172,16578172,16557304,16557304,1,1,1,1,1]
["R162",13,51676584,51677480,896,6,37825918,37825918,37825918,37825918,1,1,1,1,1]
["R163",13,55189139,55199213,10074,3,119771334,119768905,119760561,119608898,3,2,3,2,2]
["R164",14,585036,632533,47497,6,-9,-9,122050,122050,1,1,3,0,1]
["R165",14,693845,744287,50442,6,253408,253408,-9,-9,1,1,3,1,0]
["R166",14,1114276,1192540,78264,6,259288,223249,1062726,1062726,1,1,6,2,2]
["R167",14,15911244,15915593,4349,19,2869387,2869387,2867737,2867737,1,1,1,1,1]
["R168",14,21895633,21908142,12509,3,119469264,119463312,119473381,119608308,3,2,5,4,5]
["R169",14,32326254,32331873,5619,5,13977769,13977769,-9,-9,1,1,1,1,0]
["R170",14,32355663,32361302,5639,4,90434568,90434568,-9,-9,1,1,2,2,0]
["R171",14,32471618,32473240,1622,12,53289891,53289891,53289891,53289891,1,1,1,1,1]
["R172",14,33649888,33657877,7989,26,2644320,2644320,2677894,2677894,1,1,1,1,1]
["R173",14,68089840,68179075,89235,14,4418728,3012728,3486916,2249804,7,4,22,21,11]
["R174",14,69481624,69520614,38990,14,4232408,3522779,4152558,3678048,7,4,13,9,5]
["R175",14,77276291,77317502,41211,16,45617034,45247504,45073944,45073944,1,1,19,11,17]
["R176",14,80527214,80534056,6842,3,106890078,106890078,106878126,106878126,1,1,2,2,1]
["R177",15,543868,718357,174489,23,68374,256744,2089641,2089641,13,7,67,55,48]
["R178",15,737559,794422,56863,23,256744,68374,2089641,2089641,1,1,22,20,22]
["R179",15,1129419,1139860,10441,10,54114659,54114659,-9,-9,1,1,1,1,0]
["R180",15,8201603,8206799,5196,10,94898958,94898958,94843152,94843152,1,1,1,1,1]
["R181",15,15986838,15989995,3157,17,70343615,70343615,70345636,70345636,1,1,1,1,1]
["R182",15,20558399,20585624,27225,15,50688462,49495220,50883889,49161504,3,2,7,3,5]
["R183",15,25064732,25066375,1643,28,19015569,19015569,-9,-9,1,1,1,1,0]
["R184",15,25555061,25594921,39860,27,45132525,45249862,45271230,45271230,7,4,6,4,6]
["R185",15,72463837,72475916,12079,8,91717344,91730014,92399780,92399780,1,1,4,4,1]
["R186",15,77714908,78032207,317299,23,78840,78840,5980726,2089641,17,9,22,16,8]
["R187",15,82208290,82272721,64431,18,9660958,9311200,8921308,9406812,1,1,34,26,28]
["R188",16,29361969,29383314,21345,12,72707462,72707462,70551590,70551590,1,1,1,1,1]
["R189",16,49258388,49671862,413474,16,80139328,77738996,79362402,81433672,63,32,91,53,44]
["R190",16,54834965,54838813,3848,17,74255120,74255120,-9,-9,1,1,2,1,0]
["R191",16,55233099,55363627,130528,16,81662014,81646711,80682499,80097509,11,6,29,14,23]
["R192",16,55458234,55527455,69221,16,81646711,81626328,79417078,79941556,1,1,19,7,13]
["R193",16,55543542,55573752,30210,16,81543242,81696488,81611709,81620088,7,4,5,2,2]
["R194",16,64850735,64852193,1458,28,42575706,42575706,42392412,42392412,1,1,1,1,1]
["R195",16,70655991,70671722,15731,5,34055145,34055145,33841594,33862138,1,1,2,1,2]
["R196",16,70813807,71152977,339170,16,80433922,81696488,80692988,81200317,59,30,71,33,29]
["R197",17,8880405,8962985,82580,12,70262825,73028172,76810250,70780350,3,2,4,3,3]
["R198",17,39885077,39886714,1637,6,3497278,3478508,3464735,3474720,1,1,2,2,2]
["R199",17,40812470,40916289,103819,6,8774955,4462462,4322540,3170736,13,7,34,31,30]
["R200",17,41125459,41143795,18336,6,2324405,3476806,3373038,4430558,1,1,5,4,4]
["R201",17,61828041,61833643,5602,26,50251892,51311630,51314316,51312315,1,1,3,2,3]
["R202",17,71687463,71690684,3221,11,-9,-9,4563556,4563556,1,1,1,0,1]
["R203",17,72517861,72525271,7410,7,43479962,43479962,43439492,43439492,1,1,1,1,1]
["R204",17,72528227,72531972,3745,4,26462204,26462204,27595955,27595955,1,1,1,1,1]
["R205",18,756111,757467,1356,12,58265070,58265070,-9,-9,1,1,1,1,0]
["R206",18,8360482,8373983,13501,1,139763691,139763691,139739504,139739504,5,3,5,5,5]
["R207",18,14706100,14717612,11512,9,15595078,15595078,15946278,15946278,1,1,1,1,1]
["R208",18,17671743,17677197,5454,1,88963682,89029348,88963044,88963044,1,1,4,3,1]
["R209",18,18842220,18845031,2811,1,-9,-9,156815469,156815469,1,1,1,0,1]
["R210",19,11468133,11469562,1429,4,90411037,90411037,90411037,90411037,1,1,1,1,1]
["R211",19,41871366,41880073,8707,27,26732657,26717548,26873911,26873911,1,1,2,2,2]
["R212",19,60751705,60753852,2147,18,-9,-9,65712726,65712726,1,1,1,0,1]
["R213",20,6355588,6356279,691,18,21081313,21081313,21237718,21237718,1,1,1,1,1]
["R214",20,6401214,6405911,4697,10,5374462,8376884,5397633,5372430,1,1,3,2,3]
["R215",20,9150324,9151537,1213,21,48892720,48892720,48992874,48992874,1,1,1,1,1]
["R216",20,15468975,15469979,1004,9,16595638,16595638,16557304,16557304,1,1,1,1,1]
["R217",20,40925841,40930659,4818,4,6821118,6821118,6833504,6833504,1,1,1,1,1]
["R218",20,69130941,69133016,2075,16,-9,-9,18069584,18069584,1,1,1,0,1]
["R219",20,71884056,71906599,22543,21,-9,-9,71474848,71480566,1,1,4,0,2]
["R220",21,657219,694729,37510,7,-9,-9,24068204,24678472,1,1,3,0,3]
["R221",21,5768430,5771545,3115,16,81623760,81623760,-9,-9,1,1,1,1,0]
["R222",21,13229171,13246830,17659,21,-9,-9,71170632,71274788,5,3,3,0,2]
["R223",21,13260248,13261402,1154,6,48494594,48494594,48471754,48471754,1,1,1,1,1]
["R224",21,13317515,13323875,6360,7,-9,-9,24678472,24678472,1,1,1,0,1]
["R225",21,55755946,55792350,36404,10,38631536,38718168,38957373,38680889,7,4,16,8,14]
["R226",21,59845350,60926744,1081394,27,4657,2857278,909558,306584,35,18,297,164,237]
["R227",22,24504408,24514483,10075,1,24822730,24785868,24809673,24809673,1,1,5,2,5]
["R228",22,49745666,49755357,9691,10,50782594,50782594,50651671,50651671,1,1,1,1,1]
["R229",22,52317625,52323964,6339,13,83215404,83215404,83314355,83314355,1,1,1,1,1]
["R230",23,13240376,13242389,2013,29,-9,-9,25269996,25269996,1,1,1,0,1]
["R231",23,52353182,52478629,125447,23,68374,220684,2089641,26308706,7,4,36,27,33]
["R232",24,2237087,2247402,10315,7,70434655,70434655,70211949,69581706,1,1,2,1,2]
["R233",24,27063110,27075039,11929,27,45341204,45234100,43347678,45358472,1,1,4,3,4]
["R234",26,15018834,15030174,11340,11,6743198,6743198,5909515,4323028,3,2,5,3,4]
["R235",26,19035301,19036296,995,29,2964773,2964773,3413469,3413469,1,1,1,1,1]
["R236",26,23006493,23444622,438129,26,50770426,50602496,50230536,51380380,27,14,189,152,172]
["R237",26,25715286,26015674,300388,26,50687107,50868353,50695968,50913622,35,18,93,53,72]
["R238",26,34668837,34684515,15678,6,118101099,118101099,118387226,118387226,1,1,6,3,2]
["R239",27,10912446,10914274,1828,27,38196184,38196184,38193136,38193136,1,1,1,1,1]
["R240",27,15775963,15779698,3735,6,97216908,97216908,-9,-9,1,1,1,1,0]
["R241",27,38371051,38415517,44466,1,-9,-9,154890,121669,7,4,2,0,2]
["R242",27,41043668,41049402,5734,14,21166494,21166494,21074919,21154238,7,4,3,2,2]
["R243",29,20570440,20578596,8156,26,29940642,29949301,-9,-9,1,1,2,2,0]
["R244",29,20628452,20630915,2463,15,56171828,55414818,55767116,55767116,1,1,2,2,2]
["R245",29,33168020,33180215,12195,26,51322251,51314620,51312315,51385156,1,1,5,3,4]
["R246",29,45470894,45471764,870,15,54810114,54810114,54810114,54810114,1,1,1,1,1]
[{"$nulls":12},{"$f":"SUM(M2:M247)","v":3097},{"$f":"SUM(N2:N247)","v":2027},{"$f":"SUM(O2:O247)","v":2314}]

{"sheet":"Part_misassembled_contig","index":1,"n_rows":77,"n_cols":10,"rows_kept":77,"cut":false,"hidden":false,"merged":[]}
["CHR_A","BP_A_start","BP_A_end","SNP_name","BP_A_snp","CHR_B","BP_B_snp_nel","BP_B_snp_hol",null,"Description of the columns"]
[1,44801491,44837119,"BovineHD0100012777",44807017,11,83033411,83058170]
[1,44801491,44837119,"BovineHD0100012778",44807977,11,-9,83058170,null,"CHR_A = Current chromosome"]
[1,44801491,44837119,"BovineHD0100012779",44810333,11,83033411,83058170,null,"BP_A_start = current starting base pair position of the contig"]
[1,44801491,44837119,"BovineHD0100012780",44811219,11,82797828,83003460,null,"BP_A_end = current ending base pair position of the contig"]
[1,44801491,44837119,"BovineHD0100012781",44811913,11,82924571,83058170,null,"SNP_name = Name of the probe"]
[1,44801491,44837119,"BovineHD0100012782",44813075,11,-9,83004098,null,"BP_A_snp = SNP position"]
[1,44801491,44837119,"ARS-BFGL-NGS-99064",44813737,11,83080769,-9,null,"CHR_B = Estimated chromosome"]
[1,44801491,44837119,"BovineHD0100012783",44814525,11,-9,83003460,null,"BP_B_snp_nel = estimated base pair position of the SNP in Nellore"]
[1,44801491,44837119,"BovineHD0100012786",44819380,11,82923029,83003460,null,"BP_B_snp_hol = estimated base pair position of the SNP in Holstein"]
[1,44801491,44837119,"BovineHD0100012787",44820378,11,83010571,83003460]
[1,44801491,44837119,"BovineHD4100000240",44821882,11,83003028,83002142]
[1,44801491,44837119,"BovineHD0100012788",44823013,11,83003028,83002142]
[1,44801491,44837119,"BovineHD0100012789",44824104,11,83003028,83002142]
[1,44801491,44837119,"BovineHD0100012790",44826472,11,83003028,83002471]
[1,44801491,44837119,"BovineHD0100012791",44827835,11,-9,83002471]
[1,44801491,44837119,"BovineHD0100012792",44829322,11,-9,83002471]
[1,44801491,44837119,"BovineHD0100012793",44833048,11,-9,83002142]
[1,44801491,44837119,"BovineHD0100012794",44834296,11,-9,83002471]
[1,44801491,44837119,"BovineHD0100012796",44836528,11,-9,83002142]
[1,94570415,94742932,"BovineHD0100026853",94571851,2,-9,7996662]
[1,94570415,94742932,"BovineHD0100026854",94576378,2,8027738,7971828]
[1,94570415,94742932,"BovineHD0100026855",94581777,2,7971451,7907976]
[1,94570415,94742932,"BTA-85701-no-rs",94585445,2,-9,7996662]
[1,94570415,94742932,"BovineHD0100026856",94586281,2,-9,7987600]
[1,130641061,130715611,"BovineHD0100037140",130647422,2,122151268,-9]
[1,130641061,130715611,"BovineHD0100037143",130654213,2,122205228,122493165]
[1,130641061,130715611,"BovineHD0100037144",130657394,2,122151268,-9]
[1,130641061,130715611,"BovineHD0100037145",130660514,2,122151268,-9]
[1,130641061,130715611,"BovineHD0100037146",130664229,2,-9,122211568]
[1,130641061,130715611,"BovineHD4100000745",130665368,2,-9,122737707]
[2,28025216,28145296,"BovineHD0200040534",28132783,26,15143242,-9]
[2,28025216,28145296,"BovineHD0200008212",28137499,26,-9,15111408]
[2,28025216,28145296,"BovineHD0200008213",28140022,26,15203730,15111408]
[2,28025216,28145296,"BovineHD0200008214",28142923,26,15114570,15114570]
[2,28025216,28145296,"BovineHD0200008215",28144601,26,-9,17474436]
[2,121090648,121120690,"BovineHD0200035117",121091939,10,-9,18661610]
[2,121090648,121120690,"BovineHD0200035118",121097230,10,-9,18674638]
[2,121090648,121120690,"BovineHD0200035119",121101920,10,18898276,-9]
[2,121090648,121120690,"BovineHD0200035120",121106581,10,19938664,18716146]
[4,1022133,1053515,"BovineHD0400000217",1023878,6,-9,114589778]
[4,1022133,1053515,"BovineHD0400000219",1031130,6,-9,114589778]
[8,105654810,105706483,"BovineHD0800031476",105658660,7,46907610,-9]
[8,105654810,105706483,"BovineHD0800031477",105663368,7,46916572,46936118]
[8,105654810,105706483,"BovineHD0800031479",105669087,7,46845373,-9]
[8,105654810,105706483,"BovineHD0800031480",105680581,7,46916572,46799522]
[8,105654810,105706483,"ARS-BFGL-NGS-63961",105683974,7,-9,41089740]
[8,105654810,105706483,"BovineHD0800031482",105686060,7,46907610,-9]
[8,105654810,105706483,"BovineHD0800031483",105687691,7,-9,46799522]
[8,105654810,105706483,"BovineHD0800031484",105691835,7,46883292,46707208]
[8,105654810,105706483,"BTB-01401013",105695288,7,46869584,46744616]
[8,105654810,105706483,"BovineHD0800031485",105699857,7,46907610,-9]
[11,5746318,5829265,"BovineHD1100002088",5750278,6,103438288,102762460]
[11,5746318,5829265,"BovineHD1100002089",5751311,6,103438288,102762460]
[11,5746318,5829265,"BovineHD1100002092",5758041,6,103510214,102670612]
[11,5746318,5829265,"BovineHD1100002094",5759432,6,103875618,102670612]
[11,5746318,5829265,"BovineHD1100002095",5760385,6,103431044,103438392]
[11,5746318,5829265,"BovineHD1100002096",5761693,6,104280529,102670612]
[11,5746318,5829265,"BovineHD1100002097",5764094,6,103369638,102670612]
[11,5746318,5829265,"BovineHD1100002098",5764929,6,103781670,102670612]
[11,5746318,5829265,"BovineHD1100002099",5765837,6,104024952,102670612]
[11,5746318,5829265,"BovineHD1100002100",5766745,6,103431044,103438392]
[11,5746318,5829265,"BovineHD1100002101",5767719,6,103504088,102670612]
[11,5746318,5829265,"Hapmap44283-BTA-77701",5768629,6,103436910,103556284]
[11,5746318,5829265,"BovineHD1100002102",5770986,6,103504088,102670612]
[11,5746318,5829265,"BovineHD1100002103",5778054,6,103732838,103372548]
[11,5746318,5829265,"BovineHD1100002104",5786715,6,103847750,103424552]
[11,5746318,5829265,"BovineHD1100002105",5788240,6,103434450,103506352]
[11,5746318,5829265,"BovineHD1100002106",5789855,6,-9,103808350]
[11,5746318,5829265,"BovineHD1100002108",5798679,6,103426316,103590980]
[11,5746318,5829265,"BovineHD1100002109",5800039,6,103433150,103808350]
[11,50193063,50349425,"BovineHD1100014818",50329469,16,-9,49908073]
[11,50193063,50349425,"ARS-BFGL-NGS-97754",50330158,16,-9,49627590]
[11,50193063,50349425,"BovineHD1100014819",50332078,16,50112304,49540173]
[11,50193063,50349425,"BovineHD1100014821",50337162,16,50203334,50199398]
[11,50193063,50349425,"BovineHD1100014822",50339491,16,50139908,49259820]
[11,50193063,50349425,"BovineHD1100014823",50346607,16,-9,50176923]

{"sheet":"Description_part_misassembled_contig","index":2,"n_rows":12,"n_cols":12,"rows_kept":12,"cut":false,"hidden":false,"merged":[]}
["CHR_A","BP_A_start","BP_A_end","contiglen","contigname","tnsnps","nsnpshol","nsnpsnel","nsnpsdetnel","nsnpsdethol",null,"Description of the columns"]
[1,44801491,44837119,35628,"DAAA02001056.1",22,19,12,11,18]
[1,94570415,94742932,172517,"DAAA02002163.1",53,50,25,2,5,null,"CHR_A = Current chromosome"]
[1,130641061,130715611,74550,"DAAA02002928.1",40,26,26,4,3,null,"BP_A_start = current starting base pair position of the segment"]
[2,28025216,28145296,120080,"DAAA02004308.1",37,31,27,3,4,null,"BP_A_end = current ending base pair position of the segment"]
[2,121090648,121120690,30042,"DAAA02006218.1",8,4,4,2,3,null,"contiglen = contig length"]
[4,1022133,1053515,31382,"DAAA02009575.1",4,3,2,0,2,null,"contigname = Contig name in the UMD 3.1 bovine genome assembly"]
[8,105654810,105706483,51673,"DAAA02024587.1",12,7,9,8,6,null,"tnsnps = total number of SNPs in the segment"]
[11,5746318,5829265,82947,"DAAA02030196.1",31,24,27,18,19,null,"nholsnps = number of SNPs present in Holstein after filtering the data"]
[11,50193063,50349425,156362,"DAAA02031165.1",47,41,24,3,6,null,"nnelsnps = number of SNPs present in Nellore after filtering the data"]
[{"$nulls":11},"nsnpsdethol = number of SNPs detected in Holstein"]
[{"$nulls":11},"nsnpsdetnel = number of SNPs detected in Nellore"]

{"sheet":"Misplaced_snps","index":3,"n_rows":35,"n_cols":10,"rows_kept":35,"cut":false,"hidden":false,"merged":[]}
["CHR_A","BP_A_start","BP_A_end","SNP_name","BP_A_snp","CHR_B","BP_B_snp_nel","BP_B_snp_hol",null,"Description of the columns"]
[1,44801491,44837119,"BovineHD0100012776",44805289,1,157408686,157937430]
[1,86847808,86944145,"BovineHD0100024728",86849191,1,147034220,-9,null,"CHR_A = Current chromosome"]
[2,2718109,2722827,"BovineHD0200000746",2722101,24,-9,43514612,null,"BP_A_start = current starting base pair position of the segment"]
[2,113431224,113501655,"BovineHD0200032693",113481798,20,8935567,-9,null,"BP_A_end = current ending base pair position of the segment"]
[2,128869466,128891740,"BovineHD4100001669",128887693,14,12073117,12074702,null,"SNP_name = Name of the probe"]
[2,134687200,134699628,"BovineHD0200039339",134692959,6,-9,104629380,null,"BP_A_snp = SNP position"]
[2,135975294,136020644,"BovineHD4100001760",135995979,8,88530052,88547996,null,"CHR_B = Estimated chromosome"]
[3,906888,1018903,"BovineHD4100001772",944575,4,1437603,1455548,null,"BP_B_snp_nel = estimated base pair position of the SNP in Nellore"]
[3,69996098,70370896,"BovineHD4100002204",70081761,11,41624798,41699883,null,"BP_B_ssnp_hol = estimated base pair position of the SNP in Holstein"]
[4,57040988,57396931,"BovineHD0400015670",57389027,3,110655450,110637484]
[6,5078734,5117358,"BTA-116762-no-rs",5086136,20,-9,46122264]
[7,346167,369150,"BovineHD0700000062",346419,5,99606462,100714274]
[9,39276849,39298441,"BovineHD4100007379",39295192,11,-9,2063760]
[9,87575366,87900222,"UA-IFASA-4584",87799630,22,4920426,-9]
[10,14383797,14486437,"BovineHD4100007895",14436386,4,-9,1455548]
[10,89626182,89755034,"BovineHD4100008324",89672708,25,31338998,31338998]
[12,88260060,88412848,"BovineHD1200025824",88309027,16,-9,51318644]
[14,3713833,3719759,"BovineHD1400000740",3714307,3,121165532,-9]
[14,20384850,20473332,"BovineHD4100011271",20455247,9,-9,49447747]
[14,23704797,23760794,"Hapmap32295-BTA-129360",23737337,14,67727914,66404328]
[14,51534150,51879154,"Hapmap3871-BTA-22527",51738442,24,-9,46439627]
[15,5969599,6061417,"BovineHD1500001477",5975694,5,-9,25886834]
[15,5969599,6061417,"BovineHD1500025564",5971919,5,25946844,-9]
[15,54250634,54391992,"BovineHD1500015711",54377551,11,33564583,-9]
[16,51317448,51435040,"BovineHD1600014297",51431513,14,4418728,3486916]
[17,8684342,8837901,"BovineHD1700002486",8815216,12,70920910,-9]
[17,8684342,8837901,"BovineHD1700002492",8825674,12,70920910,69966194]
[17,8838002,8843813,"BovineHD1700002497",8842592,12,73211705,-9]
[18,23147410,23182621,"BovineHD1800007102",23178737,20,-9,34031023]
[19,10285107,10351058,"BTA-10072-rs29015638",10328265,5,-9,40239716]
[20,44880808,44930376,"BTA-10117-rs29015683",44916116,9,-9,43553756]
[23,27990488,28013404,"BovineHD4100016097",28013242,24,-9,37366334]
[25,36563243,36682653,"BTA-72591-no-rs",36682561,4,120264086,-9]
[29,31652100,31793665,"BTA-11858-rs29017604",31734709,11,-9,91491803]