Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice

Supplemental Material for Olsen et al., 2016

Files in this Data Supplement:

  • Figure S1 - Phylogenetic analysis using TCS (Phylogenetic network estimation based on statistical parsimony). Colors indicate the identity of accessions as indicated in the legend. (.pdf, 132 KB)
  • Table S1 - Genotype and phenotype data for Oryza samples used to generate new Rc sequence data. (.xlsx, 29 KB)
  • Table S2 - Genotype and phenotype data for Oryza samples previously sequenced at the Rc locus and included in analyses. (.xlsx, 21 KB)
  • Table S3 - Comparison of SNPs differentiating the three Malaysian weedy rice groups identified in Rc phylogenetic analyses. (.xlsx, 37 KB)
  • Table S4 - Comparison of variants within the Rc coding and amino acid sequences among three rice groups identified in Rc phylogenetic analyses. (.xlsx, 1225 KB)
  • Table S5 - Nucleotide diversity for Oryza samples at the Rc locus. Values of π, θW, Fu and Li's F, Fu and Li's D and Tajima's D for total sites and silent sites at Rc locus is included. (.xlsx, 17 KB)