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Table 4. Synonymous and nonsynonymous substitution levels in the rice genes investigated
|
Gene |
Protein/homology |
No. of synonymous sites |
No. of synonymous substitutions |
Percentage of synonymous substitution |
No. of nonsynonymous sites |
No. of nonsynonymous substitutions |
Percentage of nonsynonymous substitution |
|
1 |
RNA recognition motif |
213.8 |
0 |
0 |
659.2 |
0 |
0 |
|
2 |
Thaumatin family |
224.5 |
0 |
0 |
603.5 |
0 |
0 |
|
3 |
F-box domain |
316.3 |
0 |
0 |
1,042.7 |
1 |
0.10 |
|
4 |
Arabidopsis At4g |
159 |
0 |
0 |
462 |
1 |
0.22 |
|
5 |
Glycerol kinase |
322.9 |
0 |
0 |
1165.1 |
5 |
0.43 |
|
6 |
G10 protein |
97 |
0 |
0 |
338 |
0 |
0.00 |
|
7 |
Acylhydrolase |
248.9 |
0 |
0 |
816.1 |
1 |
0.12 |
|
8 |
Protein kinase domain |
592.5 |
1 |
0.17 |
1,939.5 |
5 |
0.26 |
|
9 |
Zinc figure |
467 |
1 |
0.21 |
1,534 |
0 |
0.00 |
|
10 |
Lectin |
560 |
2 |
0.36 |
1,810 |
0 |
0.00 |
|
11 |
Cysteine synthase A |
278.2 |
1 |
0.36 |
852.8 |
1 |
0.12 |
|
12 |
Pectinesterase |
512.7 |
2 |
0.39 |
1,638.3 |
4 |
0.25 |
|
13 |
ParA family ATPase |
237.7 |
1 |
0.42 |
812.3 |
1 |
0.12 |
|
14 |
EB1 protein |
178.3 |
1 |
0.56 |
628.7 |
0 |
0.00 |
|
15 |
Nodulin N21 |
318 |
2 |
0.63 |
873 |
0 |
0.00 |
|
16 |
EF hand |
140.7 |
1 |
0.71 |
444.3 |
1 |
0.23 |
|
17 |
Auxin responsive protein |
219.3 |
2 |
0.92 |
536.7 |
4 |
0.75 |
|
18 |
Protein kinase domain |
566.3 |
6 |
1.07 |
1,563.7 |
3 |
0.19 |
|
19 |
Pto-like serine/threonine kinase |
92 |
1 |
1.10 |
322 |
2 |
0.62 |
|
20 |
Imidazoleglycerolphosphate dehydratase |
224.2 |
2.5 |
1.12 |
672.8 |
1.5 |
0.22 |
|
21 |
AT hook motif |
502.5 |
6 |
1.20 |
1,774.5 |
2 |
0.11 |
|
22 |
Probable chitinase |
160.5 |
2 |
1.26 |
526.5 |
0 |
0.00 |
|
23 |
Asparaginase |
253.3 |
6 |
2.41 |
745.8 |
1 |
0.13 |
|
24 |
Siliencing group B protein |
122.7 |
3 |
2.49 |
387.3 |
0 |
0.00 |
|
Overall |
7,008.3 |
40.5 |
0.58 |
22,148.7 |
33.5 |
0.15 |