Tap&al 2009 Qin&al 2010 taxonomic_id Name 0 1 563191 Acidaminococcus sp. D21 0 1 1203555 Acidaminococcus sp. HPA0509 0 1 349741 Akkermansia muciniphila ATCC BAA-835 1 0 445970 Alistipes putredinis DSM 17216 1 0 717959 Alistipes shahii WAL 8301 1 0 445972 Anaerotruncus colihominis DSM 17241 1 0 411901 Bacteroides caccae ATCC 43185 1 0 997873 Bacteroides caccae CL03T12C61 0 1 997874 Bacteroides cellulosilyticus CL02T12C19 0 1 537012 Bacteroides cellulosilyticus DSM 14838 0 1 470145 Bacteroides coprocola DSM 17136 0 1 547042 Bacteroides coprophilus DSM 18228 = JCM 13818 1 0 556260 Bacteroides dorei 5_1_36/D4 1 0 997875 Bacteroides dorei CL02T00C15 1 0 997876 Bacteroides dorei CL02T12C06 1 0 997877 Bacteroides dorei CL03T12C01 1 0 483217 Bacteroides dorei DSM 17855 1 0 665953 Bacteroides eggerthii 1_2_48FAA 1 0 483216 Bacteroides eggerthii DSM 20697 1 0 997888 Bacteroides finegoldii CL09T03C10 1 0 483215 Bacteroides finegoldii DSM 17565 1 0 457424 Bacteroides fragilis 3_1_12 1 0 997880 Bacteroides fragilis CL05T00C42 1 0 997881 Bacteroides fragilis CL05T12C13 1 0 1073386 Bacteroides fragilis HMW 610 1 0 1073388 Bacteroides fragilis HMW 616 1 0 471870 Bacteroides intestinalis DSM 17393 1 0 1121098 Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 1 0 1235788 Bacteroides massiliensis dnLKV3 1 0 665954 Bacteroides ovatus 3_8_47FAA 1 0 411476 Bacteroides ovatus ATCC 8483 1 0 997885 Bacteroides ovatus CL02T12C04 1 0 997886 Bacteroides ovatus CL03T12C18 1 0 702443 Bacteroides ovatus SD CMC 3f 0 1 484018 Bacteroides plebeius DSM 17135 1 0 457388 Bacteroides sp. 2_1_7 1 0 469590 Bacteroides sp. 2_2_4 1 0 457394 Bacteroides sp. 4_3_47FAA 1 0 457395 Bacteroides sp. 9_1_42FAA 1 0 556258 Bacteroides sp. D1 1 0 449673 Bacteroides stercoris ATCC 43183 1 0 1073351 Bacteroides stercoris CC31F 1 0 226186 Bacteroides thetaiotaomicron VPI-5482 1 0 1235785 Bacteroides thetaiotaomicron dnLKV9 1 0 411479 Bacteroides uniformis ATCC 8492 1 0 997889 Bacteroides uniformis CL03T00C23 1 0 997890 Bacteroides uniformis CL03T12C37 1 0 1235787 Bacteroides uniformis dnLKV2 1 0 435590 Bacteroides vulgatus ATCC 8482 1 0 997891 Bacteroides vulgatus CL09T03C04 1 0 702446 Bacteroides vulgatus PC510 1 0 1235786 Bacteroides vulgatus dnLKV7 1 0 997892 Bacteroides xylanisolvens CL03T12C04 1 0 702447 Bacteroides xylanisolvens SD CC 1b 1 0 702444 Bacteroides xylanisolvens SD CC 2a 1 0 657309 Bacteroides xylanisolvens XB1A 0 1 367928 Bifidobacterium adolescentis ATCC 15703 0 1 411481 Bifidobacterium adolescentis L2-32 0 1 703613 Bifidobacterium animalis subsp. animalis ATCC 25527 0 1 911598 Bifidobacterium animalis subsp. lactis BS 01 0 1 486409 Bifidobacterium animalis subsp. lactis HN019 0 1 1207543 Bifidobacterium bifidum IPLA 20015 0 1 398513 Bifidobacterium bifidum NCIMB 41171 0 1 883062 Bifidobacterium bifidum S17 0 1 1036735 Bifidobacterium breve CECT 7263 0 1 1074482 Bifidobacterium breve DPC 6330 0 1 518634 Bifidobacterium breve DSM 20213 = JCM 1192 0 1 1261072 Bifidobacterium breve JCP7499 0 1 326426 Bifidobacterium breve UCC2003 0 1 566552 Bifidobacterium catenulatum DSM 16992 = JCM 1194 0 1 871562 Bifidobacterium dentium ATCC 27679 0 1 401473 Bifidobacterium dentium Bd1 0 1 553191 Bifidobacterium dentium JCVIHMP022 1 0 391904 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 1 0 1161744 Bifidobacterium longum subsp. longum 1-6B 1 0 1161745 Bifidobacterium longum subsp. longum 2-2B 1 0 1161904 Bifidobacterium longum subsp. longum 35B 1 0 722911 Bifidobacterium longum subsp. longum F8 0 1 547043 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 1 0 537007 Blautia hansenii DSM 20583 1 0 511680 Butyrivibrio crossotus DSM 2876 0 1 451640 Catenibacterium mitsuokai DSM 15897 0 1 469595 Citrobacter sp. 30_2 0 1 1173691 Citrobacter sp. A1 1 0 518636 Clostridium asparagiforme DSM 15981 0 1 445973 Clostridium bartlettii DSM 16795 0 1 997893 Clostridium bolteae 90A5 0 1 997894 Clostridium bolteae 90A9 0 1 997895 Clostridium bolteae 90B3 0 1 997896 Clostridium bolteae 90B7 0 1 411902 Clostridium bolteae ATCC BAA-613 1 0 742735 Clostridium clostridioforme 2_1_49FAA 1 0 999403 Clostridium clostridioforme 90A1 1 0 999404 Clostridium clostridioforme 90A3 1 0 999407 Clostridium clostridioforme 90A7 1 0 999409 Clostridium clostridioforme 90B1 1 0 428125 Clostridium leptum DSM 753 0 1 537013 Clostridium methylpentosum DSM 5476 1 0 500632 Clostridium nexile DSM 1787 1 0 411468 Clostridium scindens ATCC 35704 1 0 457396 Clostridium sp. 7_2_43FAA 1 0 411489 Clostridium sp. L2-50 1 0 411486 Clostridium sp. M62/1 1 0 411484 Clostridium sp. SS2/1 1 0 1042156 Clostridium sp. SY8519 1 0 411903 Collinsella aerofaciens ATCC 25986 0 1 469596 Coprobacillus sp. 29_1 0 1 665941 Coprobacillus sp. 3_3_56FAA 0 1 469597 Coprobacillus sp. 8_2_54BFAA 0 1 556262 Coprobacillus sp. D6 0 1 556270 Coprobacillus sp. D7 1 0 470146 Coprococcus comes ATCC 27758 1 0 411474 Coprococcus eutactus ATCC 27759 0 1 411464 Desulfovibrio piger ATCC 29098 1 0 742765 Dorea formicigenerans 4_6_53AFAA 1 0 411461 Dorea formicigenerans ATCC 27755 1 0 411462 Dorea longicatena DSM 13814 0 1 888066 Enterococcus casseliflavus ATCC 12755 0 1 565655 Enterococcus casseliflavus EC20 0 1 565652 Enterococcus casseliflavus EC30 0 1 565650 Enterococcus faecalis D6 0 1 565643 Enterococcus faecalis DS5 1 0 1157352 Enterococcus faecalis EnGen0111 1 0 1157353 Enterococcus faecalis EnGen0119 1 0 1157382 Enterococcus faecalis EnGen0198 1 0 749501 Enterococcus faecalis TX0102 1 0 491074 Enterococcus faecalis TX0104 0 1 565656 Enterococcus faecium 1,230,933 0 1 565663 Enterococcus faecium Com15 0 1 585035 Escherichia coli S88 0 1 439855 Escherichia coli SMS-3-5 0 1 364106 Escherichia coli UTI89 0 1 469598 Escherichia sp. 3_2_53FAA 0 1 518637 Eubacterium biforme DSM 3989 1 0 515620 Eubacterium eligens ATCC 27750 1 0 411469 Eubacterium hallii DSM 3353 1 0 1256908 Eubacterium ramulus ATCC 29099 1 0 515619 Eubacterium rectale ATCC 33656 1 0 657318 Eubacterium rectale DSM 17629 1 0 657317 Eubacterium rectale M104/1 1 0 657319 Eubacterium siraeum 70/3 1 0 428128 Eubacterium siraeum DSM 15702 1 0 717961 Eubacterium siraeum V10Sc8a 1 0 411463 Eubacterium ventriosum ATCC 27560 1 0 748224 Faecalibacterium cf. prausnitzii KLE1255 1 0 411483 Faecalibacterium prausnitzii A2-165 1 0 718252 Faecalibacterium prausnitzii L2-6 1 0 411485 Faecalibacterium prausnitzii M21/2 1 0 657322 Faecalibacterium prausnitzii SL3/3 0 1 657308 Gordonibacter pamelaeae 7-10-1-b 1 0 545696 Holdemania filiformis DSM 12042 0 1 507522 Klebsiella pneumoniae 342 0 1 478749 Marvinbryantia formatexigens DSM 14469 0 1 420247 Methanobrevibacter smithii ATCC 35061 0 1 521002 Methanobrevibacter smithii DSM 2374 0 1 483214 Methanobrevibacter smithii DSM 2375 0 1 500635 Mitsuokella multacida DSM 20544 1 0 435591 Parabacteroides distasonis ATCC 8503 1 0 999416 Parabacteroides distasonis CL03T12C09 1 0 999417 Parabacteroides distasonis CL09T03C24 1 0 999419 Parabacteroides johnsonii CL02T12C29 1 0 537006 Parabacteroides johnsonii DSM 18315 1 0 411477 Parabacteroides merdae ATCC 43184 1 0 999420 Parabacteroides merdae CL03T12C32 1 0 999421 Parabacteroides merdae CL09T00C40 0 1 537011 Prevotella copri DSM 18205 1 0 411467 Pseudoflavonifractor capillosus ATCC 29799 1 0 536231 Roseburia intestinalis L1-82 1 0 657315 Roseburia intestinalis M50/1 1 0 718255 Roseburia intestinalis XB6B4 1 0 622312 Roseburia inulinivorans DSM 16841 1 0 657321 Ruminococcus bromii L2-63 1 0 411470 Ruminococcus gnavus ATCC 29149 1 0 1073375 Ruminococcus gnavus CC55_001C 1 0 471875 Ruminococcus lactaris ATCC 29176 1 0 1073376 Ruminococcus lactaris CC59_002D 1 0 657314 Ruminococcus obeum A2-162 1 0 411459 Ruminococcus obeum ATCC 29174 1 0 457412 Ruminococcus sp. 5_1_39BFAA 1 0 1095771 Ruminococcus sp. JC304 1 0 657323 Ruminococcus sp. SR1/5 1 0 411460 Ruminococcus torques ATCC 27756 1 0 657313 Ruminococcus torques L2-14 1 0 1051074 Streptococcus thermophilus JIM 8232 1 0 322159 Streptococcus thermophilus LMD-9 1 0 264199 Streptococcus thermophilus LMG 18311 1 0 1187956 Streptococcus thermophilus MN-ZLW-002 1 0 767463 Streptococcus thermophilus ND03 1 0 411471 Subdoligranulum variabile DSM 15176 1 0 483218 [Bacteroides] pectinophilus ATCC 43243