T1_cut>0 T2_cut>0 T3_cut>0 T4_cut>0 T5_cut>0 T6_cut>0 Total_cut>0 T1_cut>1 T2_cut>1 T3_cut>1 T4_cut>1 T5_cut>1 T6_cut>1 Total_cut>1 T1_cut>10 T2_cut>10 T3_cut>10 T4_cut>10 T5_cut>10 T6_cut>10 Total_cut>10 annotated 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 antisense 1206 1490 1815 2131 2118 1893 5624 814 1490 1815 2131 1579 1432 4232 213 277 329 408 391 381 438 exon inclusion 8 8 12 11 14 8 28 4 8 12 11 9 6 17 3 4 4 4 4 4 4 exon skipping 49 37 33 39 46 46 194 19 37 33 39 22 13 107 1 1 1 1 2 2 2 intron in exon 576 585 678 759 852 750 2721 313 585 678 759 463 411 1730 91 98 114 115 120 113 132 intron retention 3511 3698 3245 2889 3589 3393 8716 2830 3698 3245 2889 2910 2786 6749 978 1056 1060 1014 1059 1052 1173 no stop codon or empty protein 25 22 22 34 27 29 75 16 22 22 34 23 22 55 5 5 5 6 3 5 6 no valid start codon 582 668 681 665 669 673 1284 528 668 681 665 581 602 1071 357 381 392 387 370 387 412 novel acceptor 236 211 268 261 289 285 1075 120 211 268 261 160 162 707 28 33 35 42 44 39 48 novel donor 146 148 151 153 232 192 644 85 148 151 153 121 110 390 26 30 32 33 32 32 35 novel donor/acceptor 45 51 59 59 67 54 252 21 51 59 59 28 23 158 7 8 8 8 7 8 9 novel exon 142 129 168 217 270 204 723 78 129 168 217 149 124 458 29 39 42 47 46 39 51 novel TES 4015 4242 4276 4239 4189 4194 4900 3976 4242 4276 4239 4157 4163 4798 3621 3754 3776 3766 3752 3762 3859 novel TSS 2843 2992 3058 3064 3049 2967 3521 2813 2992 3058 3064 3009 2939 3423 2623 2719 2730 2747 2738 2713 2794 truncated 3' 3252 3503 3594 3434 3301 3376 5132 3118 3503 3594 3434 3166 3232 4719 2414 2496 2496 2459 2432 2456 2573 truncated 5' 4497 4828 4892 4685 4515 4676 6600 4353 4828 4892 4685 4388 4528 6181 3478 3596 3604 3543 3507 3569 3704