Within-Host Evolution of Simian Arteriviruses in Crab-Eating Macaques

Supplemental material

• Supplemental file 1 -

  Fig. S1 (Heat maps showing SNP frequencies in KRCV-1-infected crab-eating macaques.)

  Fig. S2 (Heat maps showing SNP frequencies in SHFV-infected crab-eating macaques.)

  Table S1 (Comparison of nucleotide diversity among ORFs for KRCV-1-infected crab-eating macaques.)

  Table S2 (Comparison of nucleotide diversity among ORFs for KRCV-1-infected crab-eating macaque #1.)

  Table S3 (Comparison of nucleotide diversity among ORFs for KRCV-1-infected crab-eating macaque #2.)

  Table S4 (Comparison of nucleotide diversity among ORFs for KRCV-1-infected crab-eating macaque #3.)

  Table S5 (Estimates of πN and πS from assemblies subsampled to 1,000-fold coverage.)

  Table S6 (Comparison of nucleotide diversity among ORFs for SHFV-infected crab-eating macaques.)

  Table S7 (Primer sequences used to amplify KRCV-1 and SHFV.)

  Table S8 (vRNA copies/ml blood and estimated cDNA input copy number used for sequencing each sample.)

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