Input,Input,Input,Input,Input,Input,Input,Input,Input,Input,Input,Input,,Quality control,Quality control,,Normalization,,,Analysis,Analysis,Analysis,Analysis,,Analysis,Analysis,Analysis,Analysis
Protein,Peptide,Pathway,Modification,Position,Gene.name,Protein.name,Condition,PatientID,Label,Run,Intensity,,Classification,Chemoforms sum,,Isotopologue normalization,,,Peptide,Abundance Condition#1,Abundance Condition#2,Abundance Condition#3,,Site,Stoichiometry condition#1,Stoichiometry condition#2,Stoichiometry condition#3
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#1,,L,,3526344,,Non-phosphorylation,4288833,,13342310.2,,,NSPGLLVSPGNLNK,0,-0.13189255,0.081794297,,NSPGLLVSPGNLNK,0.449379085,0.659442077,0.415401603
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#1,,H,,2892492,,Non-phosphorylation,2892492,,8998374.5,,,SEPVSPPR,0,-0.35755638,0.168521987,,SEPVSPPR,0.229397422,0.180963532,0.206608248
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#1,,L,,16880014,,Phosphorylation,18417167,,10889079.91,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#1,,H,,15219336,,Phosphorylation,15219336,,8998374.5,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Acetylation Phosphorylation,,MEF2C,MEF2C,Condition#1,,L,,1537153,,Phosphorylation,,,,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,,Acetylation,,MEF2C,MEF2C,Condition#1,,L,,762489,,Non-phosphorylation,,,,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#1,,L,,,,Abundance,0,,0,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#1,,H,,1471059,,Abundance,1471059,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#1,,L,,749669,,Non-phosphorylation,749669,,3907413.943,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#1,,H,,1726411,,Non-phosphorylation,1726411,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#1,,L,,1907059,,Phosphorylation,1907059,,1163181.53,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#1,,H,,14753012,,Phosphorylation,14753012,,8998374.5,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#1,,L,,,,Filtered out,0,,,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#1,,H,,213980071,,Filtered out,213980071,,,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#2,,L,,1597042,,Non-phosphorylation,2628123,,7290614.185,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#2,,H,,3243737,,Non-phosphorylation,3243737,,8998374.5,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#2,,L,,30209344,,Phosphorylation,32287971,,14117239.51,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#2,,H,,20580458,,Phosphorylation,20580458,,8998374.5,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Acetylation Phosphorylation,,MEF2C,MEF2C,Condition#2,,L,,2078627,,Phosphorylation,,,,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,,Acetylation,,MEF2C,MEF2C,Condition#2,,L,,1031081,,Non-phosphorylation,,,,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#2,,L,,1836480,,Abundance,1836480,,8142135.301,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#2,,H,,2029607,,Abundance,2029607,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#2,,L,,574129,,Non-phosphorylation,574129,,3059175.05,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#2,,H,,1688765,,Non-phosphorylation,1688765,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#2,,L,,1367513,,Phosphorylation,1367513,,675915.1069,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#2,,H,,18205532,,Phosphorylation,18205532,,8998374.5,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#2,,L,,,,Filtered out,0,,,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#2,,H,,262926381,,Filtered out,262926381,,,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#3,,L,,4526344,,Non-phosphorylation,5288833,,15324299.71,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,,,MEF2C,MEF2C,Condition#3,,H,,3105584,,Non-phosphorylation,3105584,,8998374.5,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#3,,L,,16880014,,Phosphorylation,18417167,,10889079.91,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Phosphorylation,,MEF2C,MEF2C,Condition#3,,H,,15219336,,Phosphorylation,15219336,,8998374.5,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,Prot. Of interest,Acetylation Phosphorylation,,MEF2C,MEF2C,Condition#3,,L,,1537153,,Phosphorylation,,,,,,,,,,,,,,
Q06413,NSPGLLVSPGNLNK,,Acetylation,,MEF2C,MEF2C,Condition#3,,L,,762489,,Non-phosphorylation,,,,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#3,,L,,,,Abundance,0,,0,,,,,,,,,,,
Q06413,VLIPPGSK,,,,MEF2C,MEF2C,Condition#3,,H,,1471059,,Abundance,1471059,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#3,,L,,849669,,Non-phosphorylation,849669,,4700927.295,,,,,,,,,,,
Q06413,SEPVSPPR,,,,MEF2C,MEF2C,Condition#3,,H,,1626411,,Non-phosphorylation,1626411,,8998374.5,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#3,,L,,2007059,,Phosphorylation,2007059,,1224175.004,,,,,,,,,,,
Q06413,SEPVSPPR,,Phosphorylation,,MEF2C,MEF2C,Condition#3,,H,,14753012,,Phosphorylation,14753012,,8998374.5,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#3,,L,,,,Filtered out,0,,,,,,,,,,,,,
Q06413,NTMPSVSEDVDLLLNQR,,,,MEF2C,MEF2C,Condition#3,,H,,144118469.1,,Filtered out,144118469.1,,,,,,,,,,,,,