Table 3. 26 synonymous SNPs that distinguish CO92 and KIM
|
SNP |
Codon* |
Change† |
||||||
|
Orientation‡ |
Position (CO92) |
Name |
Position in ORF |
CO92 |
KIM |
IP32953 |
||
|
YPO0142 |
- |
s1 |
1419 |
AGT |
AGC |
AGC |
T |
|
|
YPO0163 |
- |
179236-180420 |
s20 |
525 |
GGG |
GGT |
GGG |
V |
|
YPO0185 |
+ |
203005-203853 |
s21 |
661 |
TTA |
CTA |
TTA |
T |
|
YPO0282 |
- |
281835-282872 |
s15 |
111 |
CAC |
CAT |
CAC |
T |
|
YPO0285 |
- |
286120-286665 |
s2 |
138 |
CGA |
CGT |
CGT |
V |
|
YPO0326 |
- |
335533-335847 |
s16 |
15 |
GCG |
GCA |
GCG |
T |
|
YPO0643 |
- |
699212-701050 |
s11 |
1404 |
CAA |
CAG |
CAG |
T |
|
s12 |
1557 |
GGT |
GGC |
GGC |
T |
|||
|
YPO0858 |
+ |
945059-946567 |
s22 |
1092 |
ATC |
ATA |
ATC |
V |
|
YPO1037 |
+ |
1178213-1178545 |
s3 |
247 |
TTG |
CTG |
CTG |
T |
|
YPO1224 |
- |
1384727-1385893 |
s4 |
114 |
AAA |
AAG |
AAG |
T |
|
YPO1246 |
+ |
1404043-1405449 |
s17 |
255 |
ACC |
ACT |
ACC |
T |
|
YPO1277 |
- |
1436476-1437459 |
s23 |
396 |
CGC |
CGT |
CGC |
T |
|
YPO1402 |
+ |
1585713-1586498 |
s24 |
429 |
GGC |
GGT |
GGC |
T |
|
YPO1526 |
+ |
1734343-1736199 |
s5 |
921 |
GCA |
GCC |
GCC |
V |
|
YPO2180 |
- |
2452605-2455280 |
s13 |
1827 |
GCT |
GCC |
GCC |
T |
|
YPO2291 |
+ |
2574307-2576847 |
s6 |
846 |
TTG |
TTA |
TTA |
T |
|
YPO2439 |
+ |
2738739-2739710 |
s7 |
411 |
ACC |
ACA |
ACA |
V |
|
YPO2612 |
- |
2934372-2935100 |
s14 |
129 |
ACG |
ACC |
ACC |
V |
|
s18 |
237 |
AAG |
AAA |
AAG |
T |
|||
|
YPO3339 |
- |
3724591-3725778 |
s8 |
234 |
GAA |
GAG |
GAG |
T |
|
YPO3352 |
- |
3738495-3739610 |
s34 |
210 |
GGG |
GGT |
GGT |
V |
|
YPO3841 |
- |
4310049-4312211 |
s19 |
294 |
CTG |
CTA |
CTG |
T |
|
YPO3897 |
- |
4370065-4371915 |
s9 |
30 |
ACT |
ACC |
ACC |
T |
|
YPO3943 |
+ |
4433077-4434774 |
s25 |
714 |
GCG |
GCT |
GCG |
V |
|
YPO4007 |
- |
4517879-4519210 |
s10 |
810 |
AAC |
AAT |
AAT |
T |
*
CO92: 1.ORI; KIM: 2.MED; IP32953: Y. pseudotuberculosis.†
T, transition. V, transversion‡
Orientation relative to gene order of the CO92 genome.