Sequence alignment and phylogenetic tree of MaDCLs (Fig. S1), alignment profile of PIWI domain amino acids of M. robertsii and other fungal AGO proteins (Fig. S2), sequence alignment and phylogenetic tree of MaAGOs (Fig. S3), identification of knockout mutants and complemented strains by PCR and RT-PCR (Fig. S4), sRNA distribution across different chromosomes (Fig. S5), mapping statistical analysis of small RNA libraries in WT and Δdcl2 strains (Table S4), summary distribution of sRNAs among different categories in WT and Δdcl2 strains (Table S5), and milRNAs identified by deep sequencing in WT and Δdcl2 strains (Table S6).
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Differentially expressed genes (sporulation) (Table S1).
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Genes and GO terms/categories (Table S2).
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DEGs from the WT and Δdcl2 strains (Table S3).
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