NOGs with normalized densities within the 5th percentile in R. solanacearum GMI1000 and R. solanacearum UY031. The table identifies the NOG and its description; the region relative to the gene; the proteins and locus tags of the genes mapping to the NOG in each genome; the normalized density for the NOG and its rank in each strain; as well as the number of marks; their average coverage and the length of the regions mapped to the NOG.,,,,,,,,,,,,,,,,,,
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Region,NOG,NOG_description,Rank (UY031),Norm_dens (UY031),Prot_Ids (UY031),Length (UY031),Prot_products (UY031),Coverage (UY031),Marks (UY031),Locus_tags (UY031),Rank (GMI1000),Norm_dens (GMI1000),Prot_Ids (GMI1000),Length (GMI1000),Prot_products (GMI1000),Coverage (GMI1000),Marks (GMI1000),Locus_tags (GMI1000)
DwInt,ENOG4105DS5,Uncharacterized protein conserved in bacteria (DUF2248),4,0.050778341,['WP_039557900.1'],100,['hypothetical protein'],31.33333333,3,['RSUY_RS20590'],30,0.105410523,['WP_011004322.1'],100,['hypothetical protein'],151.3333333,9,['RS_RS22110']
DwInt,ENOG4105E4G,Type IV pilus,8,0.040216232,['WP_003264172.1'],100,['secretin'],52.75,4,['RSUY_RS02430'],48,0.093484094,['WP_011002876.1'],100,['secretin'],189.6,10,['RS_RS14890']
DwInt,ENOG4105EEI,dihydropteroate synthase,41,0.026517578,['WP_039556966.1'],100,['dihydropteroate synthase'],40,2,['RSUY_RS10775'],47,0.095165553,['WP_043876591.1'],100,['dihydropteroate synthase'],149,8,['RS_RS07660']
Inner,ENOG4105CMP,catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (By similarity),8,0.018994392,['WP_020957621.1'],1128,['chemotaxis response regulator protein-glutamate methylesterase'],44.55555556,18,['RSUY_RS22390'],48,0.07391868,['WP_011004653.1'],1146,['chemotaxis response regulator protein-glutamate methylesterase'],169.4814815,81,['RS_RS23895']
Inner,ENOG41080ZS,MobA-related protein,85,0.011656078,['WP_003265247.1'],630,['molybdopterin-guanine dinucleotide biosynthesis protein MobA'],43.33333333,6,['RSUY_RS16680'],6,0.096248118,['WP_011003639.1'],600,['molybdopterin-guanine dinucleotide biosynthesis protein MobA'],174.9473684,57,['RS_RS18720']
Inner,ENOG4108RFJ,Protein-disulfide isomerase,28,0.014233805,['WP_003266055.1'],729,['DsbA family protein'],30.66666667,6,['RSUY_RS09215'],92,0.067694066,['WP_011001393.1'],729,['DsbA family protein'],165.2173913,46,['RS_RS07270']
Inner,ENOG4105D3U,Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU- in an ATP-dependent manner. Cytidine is converted to lysidine- thus changing the amino acid specificity of the tRNA from methionine to isoleucine (By similarity),108,0.010939261,['WP_003264200.1'],1428,['tRNA(Ile)-lysidine synthase'],30.55555556,9,['RSUY_RS07765'],18,0.083024574,['WP_043876577.1'],1428,['tRNA(Ile)-lysidine synthase'],149.5,100,['RS_RS05830']
Inner,ENOG4105KB7,Nudix Hydrolase,95,0.011385669,['WP_039556698.1'],507,['NUDIX hydrolase'],36.75,4,['RSUY_RS03615'],34,0.076673532,['WP_011002631.1'],507,['NUDIX hydrolase'],173.2631579,38,['RS_RS13630']
Inner,ENOG4107I2D,Pyrimidine 5''-nucleotidase,74,0.012073044,['WP_003263005.1'],861,"[""pyrimidine 5'-nucleotidase""]",35.71428571,7,['RSUY_RS00185'],64,0.070257429,['WP_010999999.1'],864,"[""pyrimidine 5'-nucleotidase""]",178.1147541,61,['RS_RS00160']
Inner,ENOG4105X2S,gCN5-related N-acetyltransferase,143,0.010158694,['WP_039557454.1'],573,['GCN5 family acetyltransferase'],27.33333333,3,['RSUY_RS19080'],33,0.07708735,['WP_011004011.1'],525,['N-acetyltransferase GCN5'],153.2857143,35,['RS_RS20545']
Inner,ENOG4105C4G,Synthesis of 3-octaprenyl-4-hydroxybenzoate (By similarity),55,0.012608662,['WP_003263114.1'],876,['4-hydroxybenzoate octaprenyltransferase'],52.81818182,11,['RSUY_RS03795'],127,0.064708744,['WP_011002596.1'],876,['4-hydroxybenzoate octaprenyltransferase'],203.2461538,65,['RS_RS13450']
Inner,ENOG4105E98,transcriptional regulator DeoR family,114,0.010798598,['WP_003266141.1'],765,['DeoR family transcriptional regulator'],64.2,10,['RSUY_RS02015'],84,0.06834277,['WP_043876667.1'],765,['DeoR family transcriptional regulator'],179.6792453,53,['RS_RS15295']
Inner,ENOG4105D28,Specifically methylates the N7 position of a guanine in 16S rRNA (By similarity),131,0.010387329,['WP_003262715.1'],678,['16S rRNA methyltransferase G'],52.71428571,7,['RSUY_RS00775'],77,0.068924086,['WP_011003210.1'],672,['ribosomal RNA small subunit methyltransferase G'],191.34,50,['RS_RS16670']
Inner,ENOG4108K4C,ec 3.1.3.12,149,0.010082729,['WP_003261333.1'],789,['trehalose-phosphatase'],40,6,['RSUY_RS21000'],74,0.06915595,['WP_011004393.1'],789,['trehalose-phosphatase'],162.42,50,['RS_RS22445']
Inner,ENOG4105ERD,Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines- such as 7-8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity),118,0.010742204,['WP_003262264.1'],867,['DNA-formamidopyrimidine glycosylase'],34.16666667,6,['RSUY_RS14060'],109,0.066140015,['WP_011000361.1'],867,['formamidopyrimidine-DNA glycosylase'],194.7301587,63,['RS_RS01975']
Inner,ENOG4107RM2,PTS IIA-like nitrogen-regulatory protein PtsN,142,0.010162587,['WP_003262274.1'],456,['PTS IIA-like nitrogen-regulatory protein PtsN'],34.33333333,3,['RSUY_RS14025'],87,0.067813727,['WP_003269869.1'],456,['PTS IIA-like nitrogen-regulatory protein PtsN'],194.8823529,34,['RS_RS02010']
Inner,ENOG4108UYB,regulatoR,94,0.011410113,['WP_003263014.1'],579,['DNA-binding response regulator'],48.16666667,6,['RSUY_RS00225'],154,0.063152913,['WP_011000007.1'],579,['DNA-binding response regulator'],169.6571429,35,['RS_RS00200']
Inner,ENOG4105D4Z,Chromate resistance,150,0.010079781,['WP_003261976.1'| 'WP_003261974.1'],1425,['hypothetical protein'- 'chromate resistance protein'],48,13,['RSUY_RS17135'| 'RSUY_RS17145'],153,0.063154403,['WP_011003855.1'| 'WP_043876826.1'],1479,['hypothetical protein'- 'chromate resistance protein'],166.9886364,88,['RS_RS19795'| 'RS_RS19805']
UpInt,ENOG4107QJF,Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (By similarity),19,0.025016583,['WP_003263629.1'],106,['phosphoglucosamine mutase'],40,2,['RSUY_RS10770'],23,0.089778823,['WP_011001475.1'],106,['phosphoglucosamine mutase'],149,8,['RS_RS07665']
UpInt,ENOG4105KHV,Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity),11,0.028432812,['WP_039555220.1'],174,['shikimate kinase'],53.6,5,['RSUY_RS02435'],36,0.084498346,['WP_016725142.1'],173,['shikimate kinase'],194,16,['RS_RS14885']
UpInt,ENOG4105X77,acyL-CoA-binding protein,38,0.019938029,['WP_003264631.1'],152,['acyl-CoA-binding protein'],35,2,['RSUY_RS08810'],11,0.09937942,['WP_028853004.1'],152,['acyl-CoA-binding protein'],152.5384615,13,['RS_RS06850']
UpInt,ENOG4107ZHB,Peptidase M22 Glycoprotease,39,0.019938029,['WP_003264633.1'],152,['tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB'],35,2,['RSUY_RS08815'],12,0.09937942,['WP_011001316.1'],152,['tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB'],152.5384615,13,['RS_RS06855']
UpInt,ENOG4107MHA,NA,42,0.01936532,['WP_003266261.1'],156,['hypothetical protein'],52.66666667,3,['RSUY_RS09135'],9,0.103131454,['WP_011001376.1'],154,['hypothetical protein'],167.4,15,['RS_RS07160']
UpInt,ENOG41090A5,Inherit from COG: deacetylase,53,0.018746962,['WP_003262941.1'],138,['DUF2334 domain-containing protein'],41,2,['RSUY_RS23170'],4,0.114161017,['WP_011004917.1'],140,['DUF2334 domain-containing protein'],188.5294118,17,['RS_RS25125']
UpInt,ENOG4105CB3,Required for the thiolation of cytidine in position 32 of tRNA- to form 2-thiocytidine (s(2)C32) (By similarity),35,0.019968056,['WP_003261416.1'],166,['tRNA 2-thiocytidine(32) synthetase TtcA'],48,3,['RSUY_RS15040'],40,0.08074606,['WP_011000142.1'],160,['tRNA 2-thiocytidine(32) synthetase TtcA'],192.0714286,14,['RS_RS00865']
UpInt,ENOG4108KF8,Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (By similarity),37,0.019968056,['WP_003261418.1'],166,['2-dehydropantoate 2-reductase'],48,3,['RSUY_RS15045'],41,0.08074606,['WP_011000141.1'],160,['2-dehydropantoate 2-reductase'],192.0714286,14,['RS_RS00860']
UpInt,ENOG4105DR8,Membrane,33,0.020622205,['WP_003265635.1'],254,['FUSC family protein'],40.5,4,['RSUY_RS16220'],53,0.07510417,['WP_011003450.1'],236,['FUSC family protein'],180,18,['RS_RS17790']