Loci with more than one conserved GTWWAC mark between R. solanacearum GMI1000 and R. solanacearum UY031. For each mark and strain; the chromid accession number; the mark position; its position relative to a conserved ortholog and the ortholog descriptors (start; end positions; strand; locus tag; protein ID; NOG ID; NOG category and description) are provided; using the strain name as a prefix. ,,,,,,,,,,,,,,,,,,,,,,,,,,,,
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Index,Region,UY031_mol,UY031_tag,UY031_start,UY031_end,UY031_strand,UY031_prot,UY031_prod,UY031_NOG,UY031_Cat,UY031_Def,UY031_mpos,UY031_rel_pos,UY031_seq,GMI1000_mol,GMI1000_tag,GMI1000_start,GMI1000_end,GMI1000_strand,GMI1000_prot,GMI1000_prod,GMI1000_NOG,GMI1000_Cat,GMI1000_Def,GMI1000_mpos,GMI1000_rel_pos,GMI1000_seq,Alignment_identities
13,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145121,-255,ATACATAAAGAAAAAGGTAAACCCATCGATCGACTGCCGTC,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618101,-256,ATACATAAAGAAAAAGGTAAACCCATCGATCGACTGCCGTC,41
14,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145124,-258,GGCAGTCGATCGATGGGTTTACCTTTTTCTTTATGTATACA,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618098,-259,GGCAGTCGATCGATGGGTTTACCTTTTTCTTTATGTATACA,41
15,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145139,-273,ACTACTACTACTACTTGTATACATAAAGAAAAAGGTAAACC,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618083,-274,ACTACTACTACTATTTGTATACATAAAGAAAAAGGTAAACC,40
16,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145142,-276,TTACCTTTTTCTTTATGTATACAAGTAGTAGTAGTAGTAAA,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618080,-277,TTACCTTTTTCTTTATGTATACAAATAGTAGTAGTAGTAAA,40
17,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145159,-293,ACAGAAAAGGCACGCCGTTTACTACTACTACTACTTGTATA,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618063,-294,ACAGAAAAGGCACGGCGTTTACTACTACTACTATTTGTATA,39
18,Upstream,NZ_CP012687.1,RSUY_RS00605,144866,145241,-1,WP_003265678.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,145162,-296,ACAAGTAGTAGTAGTAGTAAACGGCGTGCCTTTTCTGTGGA,NC_003295.1,RS_RS16830,3617982,3618357,1,WP_011003241.1,DNA-binding protein,ENOG4105K70,L,DNA-binding protein,3618060,-297,ACAAATAGTAGTAGTAGTAAACGCCGTGCCTTTTCTGTGGA,39
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37,Upstream,NZ_CP012687.1,RSUY_RS02470,572131,572317,1,WP_039555212.1,tat pathway signal sequence,ENOG4106M9E,S,Pfam:Bug,572236,-81,TGTAAACCATGTGGATGTAAACCATGAAGCCACGAAGCCAT,NC_003295.1,RS_RS14850,3191553,3191708,-1,WP_011002868.1,hypothetical protein,ENOG4106M9E,S,Pfam:Bug,3191634,-81,TGTAAACCATGTGGATGTAAACCATGAAGGCGCCAGCCCGC,34
38,Upstream,NZ_CP012687.1,RSUY_RS02470,572131,572317,1,WP_039555212.1,tat pathway signal sequence,ENOG4106M9E,S,Pfam:Bug,572239,-78,GCTTCGTGGCTTCATGGTTTACATCCACATGGTTTACATGG,NC_003295.1,RS_RS14850,3191553,3191708,-1,WP_011002868.1,hypothetical protein,ENOG4106M9E,S,Pfam:Bug,3191631,-78,GGCTGGCGCCTTCATGGTTTACATCCACATGGTTTACATGG,36
39,Upstream,NZ_CP012687.1,RSUY_RS02470,572131,572317,1,WP_039555212.1,tat pathway signal sequence,ENOG4106M9E,S,Pfam:Bug,572251,-66,GCCATCCAGCACCCATGTAAACCATGTGGATGTAAACCATG,NC_003295.1,RS_RS14850,3191553,3191708,-1,WP_011002868.1,hypothetical protein,ENOG4106M9E,S,Pfam:Bug,3191619,-66,GCCGTCCATCACCCATGTAAACCATGTGGATGTAAACCATG,39
40,Upstream,NZ_CP012687.1,RSUY_RS02470,572131,572317,1,WP_039555212.1,tat pathway signal sequence,ENOG4106M9E,S,Pfam:Bug,572254,-63,GGTTTACATCCACATGGTTTACATGGGTGCTGGATGGCCAG,NC_003295.1,RS_RS14850,3191553,3191708,-1,WP_011002868.1,hypothetical protein,ENOG4106M9E,S,Pfam:Bug,3191616,-63,GGTTTACATCCACATGGTTTACATGGGTGATGGACGGCCGG,38
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113,Upstream,NZ_CP012687.1,RSUY_RS14695,3181593,3181759,1,WP_003264579.1,isovaleryl-CoA dehydrogenase,,,,3181630,-129,TTGTATTGACGTTTACGTAAACGTCAACTGAATTGCCGCAC,NC_003295.1,RS_RS01370,313437,313605,-1,WP_011000246.1,isovaleryl-CoA dehydrogenase,,,,313567,-130,TTGTATTGACGTTTACGTAAACGTCAACTGTGCCGCCGCCG,35
114,Upstream,NZ_CP012687.1,RSUY_RS14695,3181593,3181759,1,WP_003264579.1,isovaleryl-CoA dehydrogenase,,,,3181633,-126,CGGCAATTCAGTTGACGTTTACGTAAACGTCAATACAATAG,NC_003295.1,RS_RS01370,313437,313605,-1,WP_011000246.1,isovaleryl-CoA dehydrogenase,,,,313564,-127,CGGCGGCACAGTTGACGTTTACGTAAACGTCAATACAATAG,37
115,Upstream,NZ_CP012687.1,RSUY_RS14695,3181593,3181759,1,WP_003264579.1,isovaleryl-CoA dehydrogenase,,,,3181636,-123,GCGCTATTGTATTGACGTTTACGTAAACGTCAACTGAATTG,NC_003295.1,RS_RS01370,313437,313605,-1,WP_011000246.1,isovaleryl-CoA dehydrogenase,,,,313561,-124,GCGCTATTGTATTGACGTTTACGTAAACGTCAACTGTGCCG,37
116,Upstream,NZ_CP012687.1,RSUY_RS14695,3181593,3181759,1,WP_003264579.1,isovaleryl-CoA dehydrogenase,,,,3181639,-120,TTCAGTTGACGTTTACGTAAACGTCAATACAATAGCGCGGC,NC_003295.1,RS_RS01370,313437,313605,-1,WP_011000246.1,isovaleryl-CoA dehydrogenase,,,,313558,-121,CACAGTTGACGTTTACGTAAACGTCAATACAATAGCGCGGC,39
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131,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,935,-193,TTACTACAGGTAAACCGTATACAACTCTCGCAAAGCGTTGT,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,980,-193,TTACTACAGGTAAACCGTATACAAAGCCCGCAAAGCCTTGT,37
132,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,938,-190,ACGCTTTGCGAGAGTTGTATACGGTTTACCTGTAGTAAACG,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,983,-190,AGGCTTTGCGGGCTTTGTATACGGTTTACCTGTAGTAAACG,37
133,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,942,-186,TTTACGTTTACTACAGGTAAACCGTATACAACTCTCGCAAA,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,987,-186,TTTACGTTTACTACAGGTAAACCGTATACAAAGCCCGCAAA,38
134,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,945,-183,GCGAGAGTTGTATACGGTTTACCTGTAGTAAACGTAAAGGT,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,990,-183,GCGGGCTTTGTATACGGTTTACCTGTAGTAAACGTAAAGGT,38
135,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,953,-175,TAATACGTACCTTTACGTTTACTACAGGTAAACCGTATACA,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,998,-175,TAATACATACCTTTACGTTTACTACAGGTAAACCGTATACA,40
136,Upstream,NZ_CP012688.1,RSUY_RS15710,753,1128,1,WP_039556236.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,956,-172,ATACGGTTTACCTGTAGTAAACGTAAAGGTACGTATTACTT,NC_003296.1,RS_RS17200,798,1173,1,WP_038938013.1,replication protein RepA,ENOG4105IZ8,S,Plasmid Encoded RepA Protein,1001,-172,ATACGGTTTACCTGTAGTAAACGTAAAGGTATGTATTACTT,40
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147,Upstream,NZ_CP012688.1,RSUY_RS16720,269543,269918,-1,WP_039557017.1,DNA-binding response regulator,ENOG4106QUR,K,LuxR family transcriptional regulator,269881,-338,CGGGGTAAACAAAACGGTTTACATCCCATTGATGGGTGCAA,NC_003296.1,RS_RS18775,445386,445761,-1,WP_028854072.1,multidrug MFS transporter,ENOG4106QUR,K,LuxR family transcriptional regulator,445723,-337,TGGGGTAAACAAAAAGGTTTACATCCCATTGATGGGTGCAA,39
148,Upstream,NZ_CP012688.1,RSUY_RS16720,269543,269918,-1,WP_039557017.1,DNA-binding response regulator,ENOG4106QUR,K,LuxR family transcriptional regulator,269884,-341,CACCCATCAATGGGATGTAAACCGTTTTGTTTACCCCGATC,NC_003296.1,RS_RS18775,445386,445761,-1,WP_028854072.1,multidrug MFS transporter,ENOG4106QUR,K,LuxR family transcriptional regulator,445726,-340,CACCCATCAATGGGATGTAAACCTTTTTGTTTACCCCAATC,39
149,Upstream,NZ_CP012688.1,RSUY_RS16720,269543,269918,-1,WP_039557017.1,DNA-binding response regulator,ENOG4106QUR,K,LuxR family transcriptional regulator,269893,-350,ACCGCATCCGATCGGGGTAAACAAAACGGTTTACATCCCAT,NC_003296.1,RS_RS18775,445386,445761,-1,WP_028854072.1,multidrug MFS transporter,ENOG4106QUR,K,LuxR family transcriptional regulator,445735,-349,ACAGCGCCCGATTGGGGTAAACAAAAAGGTTTACATCCCAT,36
150,Upstream,NZ_CP012688.1,RSUY_RS16720,269543,269918,-1,WP_039557017.1,DNA-binding response regulator,ENOG4106QUR,K,LuxR family transcriptional regulator,269896,-353,GGATGTAAACCGTTTTGTTTACCCCGATCGGATGCGGTGCA,NC_003296.1,RS_RS18775,445386,445761,-1,WP_028854072.1,multidrug MFS transporter,ENOG4106QUR,K,LuxR family transcriptional regulator,445738,-352,GGATGTAAACCTTTTTGTTTACCCCAATCGGGCGCTGTGCA,36