* Called family CzOrth_5.2-3_00006: AraTha AT1G29910.1 AT1G29920.1 AT1G29930.1 AT2G34420.1 AT2G34430.1 AT2G05070.1 AT2G05100.1 AT3G27690.1 AT5G54270.1&, Chlore estExt_fgenesh3_kg.C_140005 estExt_fgenesh3_pm.C_140028, ChlRei Cre12.g548950.t1.2.v5.5 Cre12.g548400.t1.2.v5.5 Cre04.g232104.t1.1.v5.5 Cre06.g283950.t1.2.v5.5 Cre06.g284200.t1.2.v5.5 Cre06.g284250.t1.2.v5.5 Cre06.g285250.t1.2.v5.5 Cre03.g156900.t1.2.v5.5&, ChrZof Cz15g09060.t1@ UNPLg00080.t1@, CocSub 27246.2.0.227, MonNeg MNEG_0362 MNEG_2873 MNEG_4170 MNEG_8835; information: {1} CAB1 ; {1} CAB2 ; {1} CAB3 ; {1} chlorophyll A/B binding protein 1 ; {1} chlorophyll A/B-binding protein 2 ; {1} chlorophyll A/B binding protein 3 ; {1} Chlorophyll a-b binding protein ; {1} Chlorophyll a/b binding protein of LHCII ; {1} Chlorophyll a/b binding protein of LHCII ; {1} Chlorophyll a-b binding protein of LHCII typeI ; {1} Chloropyll a/b binding protein of LHCII type I, chloroplast precursor ; {1} LHB1B1 ; {1} LHB1B2 ; {1} LHCB2.1 ; {1} LHCB2.2 ; {1} LHCB2.3 ; {1} LHCB3 ; {1} LHCBM2 ; {1} LHCBM3 ; {1} LHCBM4 ; {1} LHCBM5 ; {1} LHCBM6 ; {1} LHCBM7 ; {1} LHCBM8 ; {1} LHCBM9 ; {1} light-harvesting chlorophyll B-binding protein 3 ; {1} light-harvesting chlorophyll-protein complex II subunit B1 ; {1} Light-harvesting complex II chlorophyll a/b binding protein M3 ; {1} Light-harvesting protein of photosystem II ; {1} photosystem II light-harvesting complex gene 2.1 ; {1} photosystem II light-harvesting complex gene 2.2 ; {1} photosystem II light-harvesting complex gene 2.3 ; {1} photosystem II light-harvesting complex gene B1B2 ; {2} AT2G05070.1 ; {2} AT2G05070.1 ; {2} AT2G05100.1 ; {2} AT3G27690.1 ; {2} Cre03.g156900.t1.1 ; {2} Cre04.g232104.t1.1 ; {2} Cre06.g283950.t1.1 ; {2} Cre06.g284200.t1.1 ; {2} Cre06.g284250.t1.1 ; {2} Cre06.g285250.t1.1 ; {2} Cre12.g548400.t1.1 ; {2} Cre12.g548950.t1.1 ; {2} Cre32.g781300.t1.1 ; {2} Cre32.g781300.t1.1 ; {2} Cre32.g781300.t1.2 ; {2} Cre32.g781300.t1.2 ; {2} LHCB2,LHCB2.1 ; {2} LHCB2,LHCB2.2 ; {2} LHCB2,LHCB2.2 ; {2} LHCB2,LHCB2.3,LHCB2.4 ; {2} Light-harvesting complex II chlorophyll a/b binding protein M3 ; {2} photosystem II light harvesting complex gene 2.1 ; {2} photosystem II light harvesting complex gene 2.2 ; {2} photosystem II light harvesting complex gene 2.2 ; {2} photosystem II light harvesting complex gene 2.3 ; {3} LHC19 ; {3} LHC20 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_00020: AraTha AT3G44880.1 AT4G25650.2 AT2G24820.1&, Chlore fgenesh3_pg.C_scaffold_8000025 estExt_fgenesh3_pg.C_130186& IGS.gm_2_00054& IGS.gm_2_00056&, ChlRei Cre17.g724600.t1.2.v5.5 Cre17.g724700.t1.1.v5.5 Cre06.g278245.t1.1.v5.5 Cre11.g476500.t1.1.v5.5& Cre13.g583050.t1.1.v5.5& Cre06.g305650.t1.2.v5.5&, ChrZof Cz06g27150.t1@ Cz14g19030.t1@ Cz16g19110.t1@ Cz08g13200.t1@&, CocSub 65076.2.0.227 47272.2.0.227 62940.2.0.227 67210.2.0.227& 67947.2.0.227& 46572.2.0.227&, MonNeg MNEG_6684 MNEG_8089 MNEG_2947& MNEG_6685& MNEG_8822& MNEG_11945&; information: {1} ACD1 ; {1} ACD1-like ; {1} ACD1-LIKE ; {1} hypothetical protein ; {1} PAO1 ; {1} PAO2 ; {1} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {1} pheophorbide a oxygenase ; {1} pheophorbide a oxygenase ; {1} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {1} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {1} Rieske (2Fe-2S) domain protein ; {1} TIC55-II ; {1} translocon at the inner envelope membrane of chloroplasts 55-II ; {2} ACD1-like ; {2} ACD1-like ; {2} ACD1-LIKE,PTC52,TIC55-IV ; {2} ACD1-LIKE,PTC52,TIC55-IV ; {2} ACD1,LLS1,PAO ; {2} ACD1,LLS1,PAO ; {2} ACD1,LLS1,PAO ; {2} ACD1,LLS1,PAO ; {2} AT3G44880.1 ; {2} AT3G44880.1 ; {2} AT3G44880.1 ; {2} AT3G44880.1 ; {2} AT4G25650.1 ; {2} AT4G25650.2 ; {2} Cre06.g278245.t1.1 ; {2} Cre06.g305650.t1.1 ; {2} Cre13.g600650.t1.1 ; {2} Cre13.g600650.t1.1 ; {2} Cre13.g600650.t1.2 ; {2} Cre13.g600650.t1.2 ; {2} Cre17.g724600.t1.1 ; {2} Cre17.g724600.t1.1 ; {2} Cre17.g724600.t1.1 ; {2} Cre17.g724600.t1.2 ; {2} Cre17.g724600.t1.2 ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {2} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {3} PAO2 ; {3} PAO3 ; {3} PAO4 ; {3} PAO6 ; {3} Pheophorbide a Oxygenase ; {3} Pheophorbide a Oxygenase . * Called family CzOrth_5.2-3_00044: AraTha AT1G67090.1 AT5G38410.3 AT5G38420.1 AT5G38430.1, Chlore estExt_fgenesh3_kg.C_10021 estExt_Genewise1.C_10642, ChlRei Cre02.g120100.t1.2.v5.5 Cre02.g120150.t1.2.v5.5, ChrZof Cz17g13100.t1@ Cz14g01190.t1&, CocSub 65708.2.0.227, MonNeg MNEG_4740 MNEG_6706; information: {1} RBCS1A ; {1} RBCS1 ; {1} RBCS2 ; {1} Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1, chloroplast precursor ; {1} Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 ; {1} ribulose bisphosphate carboxylase small chain 1A ; {1} Ribulose bisphosphate carboxylase (small chain) family protein ; {1} ribulose-bisphosphate carboxylase small chain ; {2} AT1G67090.1 ; {2} AT1G67090.1 ; {2} Cre02.g120100.t1.1 ; {2} Cre02.g120100.t1.1 ; {2} Cre02.g120100.t1.2 ; {2} Cre02.g120150.t1.1 ; {2} RBCS1A ; {2} RBCS1A ; {2} Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1, chloroplast precursor ; {2} ribulose bisphosphate carboxylase small chain 1A ; {2} ribulose bisphosphate carboxylase small chain 1A ; {3} RBCS ; {3} Rubisco Small Subunit . * Called family CzOrth_5.2-3_00050: Chlore estExt_Genewise1.C_240234, ChlRei Cre01.g066917.t1.1.v5.5, ChrZof Cz13g03240.t1@, CocSub 58975.2.0.227 35121.2.0.227 21950.2.0.227 15915.2.0.227&, MonNeg MNEG_0743 MNEG_1100 MNEG_2871 MNEG_4172 MNEG_6634 MNEG_9265; information: {1} Chlorophyll a-b binding protein ; {1} Chlorophyll a/b binding protein of LHCII ; {1} Chlorophyll a-b binding protein of LHCII type I ; {1} Chlorophyll a-b binding protein of LHCII typeI ; {1} LHCBM1 ; {2} AB140,CAB1,CAB140,LHCB1.3 ; {2} AB140,CAB1,CAB140,LHCB1.3 ; {2} AT1G29930.1 ; {2} AT1G29930.1 ; {2} AT2G05070.1 ; {2} AT3G27690.1 ; {2} chlorophyll A/B binding protein 1 ; {2} chlorophyll A/B binding protein 1 ; {2} Chlorophyll a/b binding protein of LHCII ; {2} Chlorophyll a/b binding protein of LHCII ; {2} Cre01.g066917.t1.1 ; {2} Cre06.g283950.t1.1 ; {2} Cre06.g283950.t1.2 ; {2} Cre12.g548400.t1.1 ; {2} Cre12.g548400.t1.2 ; {2} Cre23.g766250.t1.1 ; {2} Cre23.g766250.t1.1 ; {2} Cre23.g766250.t1.2 ; {2} Cre23.g766250.t1.2 ; {2} LHCB2,LHCB2.2 ; {2} LHCB2,LHCB2.3,LHCB2.4 ; {2} Light-harvesting protein of photosystem II ; {2} photosystem II light harvesting complex gene 2.2 ; {2} photosystem II light harvesting complex gene 2.3 ; {3} LHC16 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_00084: AraTha AT1G02500.1 AT2G36880.1 AT3G17390.1 AT4G01850.1, Chlore IGS.gm_9_00053, ChlRei Cre06.g250200.t1.2.v5.5, ChrZof Cz05g24030.t1@ Cz15g18200.t1@, CocSub 26819.2.0.227, MonNeg MNEG_1282 MNEG_14293& MNEG_15462&; information: {1} MAT3 ; {1} methionine adenosyltransferase 3 ; {1} MTO3 ; {1} S-adenosylmethionine synthetase 1 ; {1} S-adenosylmethionine synthetase 2 ; {1} S-adenosylmethionine synthetase ; {1} S-adenosylmethionine synthetase family protein ; {1} S-adenosylmethionine synthetase ; {1} S-adenosylmethionine synthetase ; {1} SAM1 ; {1} SAM-2 ; {2} AT2G36880.2 ; {2} AT3G17390.1 ; {2} Cre06.g250200.t1.1 ; {2} Cre06.g250200.t1.1 ; {2} Cre06.g250200.t1.2 ; {2} MAT3 ; {2} MAT4,MTO3,SAMS3 ; {2} methionine adenosyltransferase 3 ; {2} S-adenosylmethionine synthetase ; {2} S-adenosylmethionine synthetase family protein ; {3} AdoMet Synthetase ; {3} METK ; {3} METM ; {3} SAS1 . * Called family CzOrth_5.2-3_00108: AraTha AT1G79530.1 AT1G13440.1 AT1G16300.1 AT3G04120.1, Chlore estExt_Genewise1Plus.C_160178 e_gw1.2.203.1, ChlRei Cre12.g485150.t1.2.v5.5, ChrZof Cz05g34160.t1@, CocSub 26453.2.0.227 53355.2.0.227&, MonNeg MNEG_6420; information: {1} GAP1 ; {1} GAPC1 ; {1} GAPC2 ; {1} GAPCP-1 ; {1} GAPCP-2 ; {1} glyceraldehyde-3-phosphate dehydrogenase C2 ; {1} Glyceraldehyde 3-phosphate dehydrogenase ; {1} glyceraldehyde-3-phosphate dehydrogenase C subunit 1 ; {1} glyceraldehyde 3-phosphatedehydrogenase ; {1} glyceraldehyde-3-phosphate dehydrogenase of plastid 1 ; {1} glyceraldehyde-3-phosphate dehydrogenase of plastid 2 ; {2} AT1G79530.1 ; {2} AT1G79530.1 ; {2} AT1G79530.1 ; {2} Cre12.g485150.t1.1 ; {2} Cre12.g485150.t1.1 ; {2} Cre12.g485150.t1.1 ; {2} Cre12.g485150.t1.2 ; {2} Cre12.g485150.t1.2 ; {2} GAPCP-1 ; {2} GAPCP-1 ; {2} GAPCP-1 ; {2} Glyceraldehyde 3-phosphate dehydrogenase ; {2} Glyceraldehyde 3-phosphate dehydrogenase ; {2} glyceraldehyde-3-phosphate dehydrogenase of plastid 1 ; {2} glyceraldehyde-3-phosphate dehydrogenase of plastid 1 ; {2} glyceraldehyde-3-phosphate dehydrogenase of plastid 1 ; {3} GAPDH ; {3} Glyceraldehyde-3-Phosphate Dehydrogenase . * Called family CzOrth_5.2-3_00130: AraTha AT4G18480.1 AT5G45930.1, Chlore IGS.gm_6_00403, ChlRei Cre12.g510800.t1.2.v5.5 Cre06.g306300.t1.2.v5.5, ChrZof Cz06g16260.t1@ UNPLg00024.t1, CocSub 35407.2.0.227, MonNeg MNEG_8580 MNEG_10848& MNEG_12369&; information: {1} CHLI1 ; {1} CHLI1 ; {1} CHLI2 ; {1} CHLI2 ; {1} magnesium chelatase i2 ; {1} Magnesium chelatase subunit I ; {1} magnesium chelatase subunit I ; {1} magnesium chelatase subunit I ; {1} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} AT4G18480.1 ; {2} AT4G18480.1 ; {2} CH-42,CH42,CHL11,CHLI-1,CHLI1 ; {2} CH-42,CH42,CHL11,CHLI-1,CHLI1 ; {2} Cre06.g306300.t1.1 ; {2} Cre12.g510800.t1.1 ; {2} Cre12.g510800.t1.1 ; {2} Cre12.g510800.t1.2 ; {2} Magnesium chelatase subunit I ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {3} CHLI ; {3} Mg-Chelatase Subunit I . * Called family CzOrth_5.2-3_00150: AraTha AT1G53310.1 AT2G42600.2 AT3G14940.1, Chlore estExt_Genewise1Plus.C_240219, ChlRei Cre11.g476325.t1.1.v5.5 Cre16.g673852.t1.1.v5.5, ChrZof UNPLg00263.t1@, CocSub 52173.2.0.227, MonNeg MNEG_16102; information: {1} phosphoenolpyruvate carboxylase 1 ; {1} phosphoenolpyruvate carboxylase 2 ; {1} phosphoenolpyruvate carboxylase 3 ; {1} phosphoenolpyruvate carboxylase ; {1} PPC1 ; {1} PPC2 ; {1} PPC3 ; {2} AT1G53310.1 ; {2} AT1G53310.1 ; {2} AT1G68750.1 ; {2} ATPEPC1,ATPPC1,PEPC1,PPC1 ; {2} ATPEPC1,ATPPC1,PEPC1,PPC1 ; {2} ATPPC4,PPC4 ; {2} Cre16.g673852.t1.1 ; {2} phosphoenolpyruvate carboxylase 1 ; {2} phosphoenolpyruvate carboxylase 1 ; {2} phosphoenolpyruvate carboxylase 4 ; {3} PEPC1 ; {3} PEP Carboxylase . * Called family CzOrth_5.2-3_00153: AraTha AT2G36580.1 AT3G52990.1, Chlore estExt_Genewise1Plus.C_180075 estExt_Genewise1Plus.C_60179 IGS.gm_6_00263&, ChlRei Cre02.g147900.t1.1.v5.5 Cre06.g280950.t1.2.v5.5, ChrZof Cz15g09100.t1@ Cz14g14130.t1@&, CocSub 53369.2.0.227 37338.2.0.227&, MonNeg MNEG_12714 MNEG_6861& MNEG_6954& MNEG_13279&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} PYK2 ; {1} PYK5 ; {1} Pyruvate kinase ; {1} Pyruvate kinase family protein ; {2} AT2G36580.1 ; {2} AT3G52990.1 ; {2} AT3G52990.1 ; {2} AT3G52990.1 ; {2} Cre06.g280950.t1.1 ; {2} Cre06.g280950.t1.1 ; {2} Cre06.g280950.t1.1 ; {2} Cre06.g280950.t1.2 ; {2} Cre06.g280950.t1.2 ; {2} Pyruvate kinase ; {2} Pyruvate kinase ; {2} Pyruvate kinase family protein ; {2} Pyruvate kinase family protein ; {2} Pyruvate kinase family protein ; {3} PYK1 ; {3} PYK3 ; {3} Pyruvate Kinase ; {3} Pyruvate Kinase . * Called family CzOrth_5.2-3_00162: AraTha AT4G33070.1 AT5G01320.1 AT5G01330.1 AT5G54960.1, Chlore fgenesh3_pg.C_scaffold_11000159 estExt_Genewise1Plus.C_110232&, ChlRei Cre03.g165700.t1.1.v5.5, ChrZof Cz01g33100.t1@, CocSub 38356.2.0.227, MonNeg MNEG_6097 MNEG_7407&; information: {1} PDC2 ; {1} PDC3 ; {1} PDC3 ; {1} pyruvate decarboxylase-2 ; {1} pyruvate decarboxylase-3 ; {1} Pyruvate decarboxylase ; {1} Pyruvate decarboxylase isozyme 1 ; {1} pyruvate decarboxylase ; {1} Thiamine pyrophosphate dependent pyruvate decarboxylase family protein ; {2} AT4G33070.1 ; {2} AT5G54960.1 ; {2} Cre03.g165700.t1.1 ; {2} PDC2 ; {2} pyruvate decarboxylase-2 ; {2} Pyruvate decarboxylase ; {2} Thiamine pyrophosphate dependent pyruvate decarboxylase family protein ; {3} PDC ; {3} Pyruvate Decarboxylase . * Called family CzOrth_5.2-3_00202: AraTha AT1G74030.1 AT2G29560.1 AT2G36530.1, Chlore IGS.gm_17_00056, ChlRei Cre12.g513200.t1.2.v5.5, ChrZof Cz05g10010.t1@, CocSub 38308.2.0.227 35576.2.0.227, MonNeg MNEG_7542 MNEG_10533& MNEG_12175&; information: {1} cytosolic enolase ; {1} ENO1 ; {1} ENOC ; {1} enolase 1 ; {1} Enolase ; {1} Enolase ; {1} enolase ; {1} enolase ; {1} LOS2 ; {1} PGH1 ; {2} AT2G36530.1 ; {2} AT2G36530.1 ; {2} Cre12.g513200.t1.1 ; {2} Cre12.g513200.t1.1 ; {2} Cre12.g513200.t1.2 ; {2} ENO2,LOS2 ; {2} ENO2,LOS2 ; {2} Enolase ; {2} Enolase ; {3} ENO ; {3} Enolase . * Called family CzOrth_5.2-3_00208: AraTha AT1G64400.1 AT4G23850.1 AT4G11030.1 AT1G49430.1& AT1G77590.1& AT2G04350.1& AT2G47240.1&, Chlore estExt_Genewise1.C_10263 e_gw1.7.304.1 estExt_Genewise1.C_30482&, ChlRei Cre13.g566650.t1.2.v5.5 Cre12.g500715.t1.2.v5.5&, ChrZof Cz11g20120.t1@, CocSub 28164.2.0.227 54565.2.0.227& 60008.2.0.227&, MonNeg MNEG_3238 MNEG_6291&; information: {1} AMP-dependent synthetase and ligase family protein ; {1} AMP-dependent synthetase and ligase family protein ; {1} hypothetical protein ; {1} hypothetical protein ; {1} LACS1 ; {1} LACS2 ; {1} LACS3 ; {1} LACS4 ; {1} LACS8 ; {1} LACS9 ; {1} long-chain acyl-CoA synthetase 2 ; {1} long chain acyl-CoA synthetase 9 ; {2} AMP-dependent synthetase and ligase family protein ; {2} AMP-dependent synthetase and ligase family protein ; {2} AMP-dependent synthetase and ligase family protein ; {2} AMP-dependent synthetase and ligase family protein ; {2} AT1G64400.1 ; {2} AT4G11030.1 ; {2} AT4G23850.1 ; {2} AT4G23850.1 ; {2} AT4G23850.1 ; {2} Cre12.g500715.t1.1 ; {2} Cre13.g566650.t1.1 ; {2} Cre13.g566650.t2.1 ; {2} Cre13.g566650.t2.1 ; {2} LACS3 ; {2} LACS4 ; {2} LACS4 ; {2} LACS4 ; {3} LACS2 ; {3} Long Chain Acyl-CoA Synthetase . * Called family CzOrth_5.2-3_00210: AraTha AT1G29310.1 AT1G78720.1 AT2G34250.1, Chlore estExt_fgenesh3_pg.C_290020, ChlRei Cre03.g171350.t1.2.v5.5, ChrZof Cz01g29020.t1@, CocSub 29889.2.0.227, MonNeg MNEG_5039 MNEG_13862 MNEG_12475& MNEG_15989&; information: {1} hypothetical protein ; {1} Protein transport protein Sec61 subunit alpha ; {1} Protein transport protein Sec61 subunit alpha ; {1} SEC61A ; {1} SEC61-alpha subunit of ER-translocon ; {1} SecY protein transport family protein ; {2} AT1G78720.1 ; {2} AT2G34250.2 ; {2} Cre03.g171350.t1.1 ; {2} Cre03.g171350.t1.1 ; {2} Cre03.g171350.t1.2 ; {2} SEC61-alpha subunit of ER-translocon ; {2} SecY protein transport family protein ; {2} SecY protein transport family protein ; {3} Alpha Subunit of ER Translocon ; {3} SEC61A . * Called family CzOrth_5.2-3_00218: AraTha AT1G19440.1 AT2G26640.1 AT2G16280.1 AT1G68530.1& AT1G71160.1& AT1G25450.1& AT2G26250.1& AT2G15090.1& AT3G52160.1& AT4G34250.1& AT4G34510.1& AT4G34520.1&, Chlore fgenesh3_pm.C_scaffold_14000024 IGS.gm_30_00086&, ChlRei Cre17.g722150.t1.2.v5.5, ChrZof Cz06g36280.t1 Cz11g01190.t1& Cz17g12050.t1@&, CocSub 58877.2.0.227 48294.2.0.227& 18441.2.0.227& 18466.2.0.227& 57989.2.0.227& 44199.2.0.227& 26029.2.0.227& 12451.2.0.227& 64433.2.0.227& 12119.2.0.227& 36731.2.0.227&, MonNeg MNEG_3134 MNEG_12583 MNEG_6071& MNEG_6070& MNEG_6733& MNEG_9306& MNEG_11436& MNEG_14829& MNEG_15542&; information: {1} 3-ketoacyl-CoA synthase 10 ; {1} 3-ketoacyl-CoA synthase 11 ; {1} 3-ketoacyl-CoA synthase 15 ; {1} 3-ketoacyl-CoA synthase 16 ; {1} 3-ketoacyl-CoA synthase 17 ; {1} 3-ketoacyl-CoA synthase 18 ; {1} 3-ketoacyl-CoA synthase 19 ; {1} 3-ketoacyl-CoA synthase 1 ; {1} 3-ketoacyl-CoA synthase 4 ; {1} 3-ketoacyl-CoA synthase 4 ; {1} 3-ketoacyl-CoA synthase 4 ; {1} 3-ketoacyl-CoA synthase 5 ; {1} 3-ketoacyl-CoA synthase 5 ; {1} 3-ketoacyl-CoA synthase 6 ; {1} 3-ketoacyl-CoA synthase 7 ; {1} 3-ketoacyl-CoA synthase 8 ; {1} 3-ketoacyl-CoA synthase 9 ; {1} 3-ketoacyl-CoA synthase 9 ; {1} KCS10 ; {1} KCS11 ; {1} KCS15 ; {1} KCS16 ; {1} KCS17 ; {1} KCS18 ; {1} KCS4 ; {1} KCS5 ; {1} KCS6 ; {1} KCS7 ; {1} KCS8 ; {1} KCS9 ; {1} PKS3 ; {1} Type III polyketide synthase ; {2} 3-ketoacyl-CoA synthase 11 ; {2} 3-ketoacyl-CoA synthase 1 ; {2} 3-ketoacyl-CoA synthase 2 ; {2} 3-ketoacyl-CoA synthase 4 ; {2} 3-ketoacyl-CoA synthase 4 ; {2} 3-ketoacyl-CoA synthase 4 ; {2} 3-ketoacyl-CoA synthase 6 ; {2} AT1G01120.1 ; {2} AT1G04220.1 ; {2} AT1G19440.1 ; {2} AT1G19440.1 ; {2} AT1G19440.1 ; {2} AT1G68530.1 ; {2} AT2G26640.1 ; {2} CER6,CUT1,G2,KCS6,POP1 ; {2} Cre17.g722150.t1.1 ; {2} Cre17.g722150.t1.1 ; {2} Cre17.g722150.t1.1 ; {2} Cre17.g722150.t1.2 ; {2} Cre17.g722150.t1.2 ; {2} KCS11 ; {2} KCS1 ; {2} KCS2 ; {2} KCS4 ; {2} KCS4 ; {2} KCS4 ; {2} Type III polyketide synthase ; {2} Type III polyketide synthase ; {3} LCKAS13 ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase . * Called family CzOrth_5.2-3_00237: AraTha AT3G51520.1, Chlore IGS.gm_22_00199 gw1.32.76.1, ChlRei Cre03.g205050.t1.2.v5.5, ChrZof Cz11g24150.t1@ Cz06g22030.t1@&, CocSub 29040.2.0.227, MonNeg MNEG_3586 MNEG_10977 MNEG_16067 MNEG_13920&; information: {1} diacylglycerol acyltransferase family ; {1} Diacylglycerol O-acyltransferase 2B ; {1} Diacylglycerol O-acyltransferase ; {1} hypothetical protein ; {1} hypothetical protein ; {2} AT3G51520.1 ; {2} AT3G51520.1 ; {2} Cre03.g205050.t1.1 ; {2} Cre03.g205050.t1.1 ; {2} Cre03.g205050.t1.2 ; {2} diacylglycerol acyltransferase family ; {2} diacylglycerol acyltransferase family ; {2} Diacylglycerol O-acyltransferase ; {3} DGAT2C ; {3} DGAT2G ; {3} Diacylglycerol Acyltransferase Type 2B ; {3} Diacylglycerol Acyltransferase Type 2 . * Called family CzOrth_5.2-3_00278: AraTha AT1G07110.1 AT5G04120.1 AT3G30200.1&, Chlore IGS.gm_11_00146, ChlRei Cre16.g691888.t1.1.v5.5 Cre16.g652150.t1.2.v5.5&, ChrZof Cz12g10060.t1@ Cz16g19090.t1@, CocSub 19224.2.0.227, MonNeg MNEG_16668 MNEG_14750&; information: {1} 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 2 ; {1} 6-phosphofructo-2-kinase ; {1} F2KP ; {1} FBP3 ; {1} FBP4 ; {1} fructose-2,6-bisphosphatase ; {1} Fructose-2,6-bisphosphate 2-phosphatase/6-phosphofructo-2-kinase ; {1} Fructose-2,6-bisphosphate 2-phosphatase ; {1} Phosphoglycerate mutase family protein ; {1} Plant transposase (Ptta/En/Spm family) ; {2} AT1G07110.1 ; {2} AT1G07110.1 ; {2} AT1G07110.1 ; {2} ATF2KP,F2KP,FKFBP ; {2} ATF2KP,F2KP,FKFBP ; {2} ATF2KP,F2KP,FKFBP ; {2} Cre01.g072800.t1.1 ; {2} Cre01.g072800.t2.1 ; {2} Cre16.g652150.t1.1 ; {2} Cre16.g691888.t2.1 ; {2} fructose-2,6-bisphosphatase ; {2} fructose-2,6-bisphosphatase ; {2} fructose-2,6-bisphosphatase ; {2} Fructose-2,6-bisphosphate 2-phosphatase ; {3} FBP3-1 ; {3} FBP3-2 ; {3} Fructose-2,6-Bisphosphate-2-Phosphatase . * Called family CzOrth_5.2-3_00293: Chlore fgenesh3_pm.C_scaffold_8000032, ChlRei Cre08.g365900.t1.2.v5.5 Cre08.g367400.t1.1.v5.5 Cre08.g367500.t1.1.v5.5, ChrZof Cz16g02040.t1@, CocSub 65904.2.0.227, MonNeg MNEG_4968 MNEG_6217; information: {1} fucoxanthin chlorophyll a/c protein ; {1} LHCSR1 ; {1} LHCSR2 ; {1} LHCSR3 ; {1} protein fucoxanthin chlorophyll a/c protein ; {1} Stress-related chlorophyll a/b binding protein 1 ; {1} Stress-related chlorophyll a/b binding protein 2 ; {1} Stress-related chlorophyll a/b binding protein 3 ; {2} AB140,CAB1,CAB140,LHCB1.3 ; {2} AB165,CAB2,LHCB1.1 ; {2} AT1G29920.1 ; {2} AT1G29930.1 ; {2} chlorophyll A/B binding protein 1 ; {2} chlorophyll A/B-binding protein 2 ; {2} Cre08.g365900.t1.1 ; {2} Cre08.g365900.t1.1 ; {2} Cre08.g365900.t1.2 ; {2} Stress-related chlorophyll a/b binding protein 1 ; {3} LHCSR ; {3} LI818 ; {3} Light-Harvesting Complex Stress Response . * Called family CzOrth_5.2-3_00298: AraTha AT3G16620.1 AT5G20300.1 AT2G16640.1& AT4G02510.1&, Chlore estExt_fgenesh3_pg.C_90065, ChlRei Cre17.g707500.t1.2.v5.5 Cre17.g734300.t1.1.v5.5, ChrZof Cz03g17170.t1@ Cz10g05020.t1&, CocSub 26914.2.0.227, MonNeg MNEG_13961; information: {1} Avirulence induced gene (AIG1) family protein ; {1} multimeric translocon complex in the outer envelope membrane 132 ; {1} TOC120 ; {1} TOC132 ; {1} TOC159 ; {1} Translocase of chloroplast 90 ; {1} translocon at the outer envelope membrane of chloroplasts 159 ; {1} translocon outer complex protein 120 ; {2} AT3G16620.1 ; {2} AT3G16620.1 ; {2} ATTOC120,TOC120 ; {2} ATTOC120,TOC120 ; {2} Cre17.g707500.t1.1 ; {2} Cre17.g707500.t1.1 ; {2} Cre17.g707500.t1.2 ; {2} translocon outer complex protein 120 ; {2} translocon outer complex protein 120 ; {3} Chloroplast Outer Membrane Translocase ; {3} TOC159 . * Called family CzOrth_5.2-3_00308: AraTha AT1G44575.1, Chlore IGS.gm_3_00253, ChlRei Cre01.g016600.t1.2.v5.5 Cre01.g016750.t1.2.v5.5, ChrZof Cz03g01250.t1@, CocSub 43923.2.0.227 19247.2.0.227 59631.2.0.227& 32166.2.0.227&, MonNeg MNEG_5545 MNEG_5546&; information: {1} Chlorophyll A-B binding family protein ; {1} Chloroplast Photosystem II-associated 22 kDa protein ; {1} hypothetical protein ; {1} NPQ4 ; {1} Photosystem II protein ; {1} PSBS1 ; {2} AT1G44575.1 ; {2} AT1G44575.1 ; {2} AT1G44575.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chloroplast Photosystem II-associated 22 kDa protein ; {2} Chloroplast Photosystem II-associated 22 kDa protein ; {2} Cre01.g016600.t1.1 ; {2} Cre01.g016600.t1.1 ; {2} Cre01.g016600.t1.1 ; {2} Cre01.g016600.t1.2 ; {2} Cre01.g016600.t1.2 ; {2} Cre01.g016750.t1.1 ; {2} NPQ4,PSBS ; {2} NPQ4,PSBS ; {2} NPQ4,PSBS ; {3} Photosystem II Subunit S ; {3} PSBS . * Called family CzOrth_5.2-3_00315: AraTha AT2G22480.1 AT4G26270.1& AT4G29220.1& AT4G32840.1& AT5G47810.1& AT5G56630.1& AT5G61580.1&, Chlore estExt_Genewise1.C_30657 estExt_Genewise1.C_20471& IGS.gm_9_00012&, ChlRei Cre12.g553250.t1.2.v5.5 Cre06.g262900.t1.2.v5.5 Cre11.g467552.t1.1.v5.5&, ChrZof Cz09g25120.t1@ Cz07g13120.t1@& Cz16g11260.t1@&, CocSub 52357.2.0.227 11132.2.0.227&, MonNeg MNEG_1568 MNEG_1619 MNEG_1567& MNEG_5364& MNEG_6227&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} PFK1 ; {1} PFK1 ; {1} PFK2 ; {1} PFK2 ; {1} PFK3 ; {1} PFK4 ; {1} PFK5 ; {1} PFK6 ; {1} PFK7 ; {1} phosphofructokinase 1 ; {1} phosphofructokinase 2 ; {1} phosphofructokinase 3 ; {1} phosphofructokinase 4 ; {1} phosphofructokinase 5 ; {1} phosphofructokinase 6 ; {1} phosphofructokinase 7 ; {1} Phosphofructokinase ; {2} AT2G22480.1 ; {2} AT2G22480.1 ; {2} AT2G22480.1 ; {2} AT2G22480.1 ; {2} Cre06.g262900.t1.1 ; {2} Cre06.g262900.t1.1 ; {2} Cre06.g262900.t1.2 ; {2} Cre12.g553250.t1.1 ; {2} Cre12.g553250.t1.1 ; {2} Cre12.g553250.t1.2 ; {2} PFK5 ; {2} PFK5 ; {2} PFK5 ; {2} PFK5 ; {2} phosphofructokinase 5 ; {2} phosphofructokinase 5 ; {2} phosphofructokinase 5 ; {2} phosphofructokinase 5 ; {2} Phosphofructokinase ; {2} Phosphofructokinase ; {3} PFK1 ; {3} PFK2 ; {3} PFK3 ; {3} Phosphofructokinase ; {3} Phosphofructokinase . * Called family CzOrth_5.2-3_00317: AraTha AT2G06520.1, Chlore IGS.gm_2_00378, ChlRei Cre02.g082750.t1.2.v5.5 Cre02.g082852.t1.1.v5.5, ChrZof Cz17g16010.t1@, CocSub 52698.2.0.227, MonNeg MNEG_1031 MNEG_2547; information: {1} 4.1 kDa photosystem II subunit ; {1} hypothetical protein ; {1} photosystem II subunit X ; {1} PSBX ; {1} PSBX ; {2} 4.1 kDa photosystem II subunit ; {2} AT2G06520.1 ; {2} AT2G06520.1 ; {2} Cre02.g082750.t1.1 ; {2} Cre02.g082750.t1.1 ; {2} Cre02.g082750.t1.2 ; {2} photosystem II subunit X ; {2} photosystem II subunit X ; {2} PSBX ; {2} PSBX ; {3} Photosystem II Subunit X ; {3} PSBX . * Called family CzOrth_5.2-3_00321: AraTha AT1G79750.1 AT2G19900.1 AT5G11670.1 AT5G25880.1, Chlore IGS.gm_3_00330, ChlRei Cre06.g251400.t1.2.v5.5, ChrZof Cz04g02110.t1@, CocSub 62489.2.0.227, MonNeg MNEG_11773&; information: {1} malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) ; {1} MME6 ; {1} NADP-dependent malic enzyme ; {1} NADP-malic enzyme 1 ; {1} NADP-malic enzyme 2 ; {1} NADP-malic enzyme 3 ; {1} NADP-malic enzyme 4 ; {1} NADP-ME1 ; {1} NADP-ME2 ; {1} NADP-ME3 ; {1} NADP-ME4 ; {2} AT5G25880.1 ; {2} AT5G25880.1 ; {2} ATNADP-ME3,NADP-ME3 ; {2} ATNADP-ME3,NADP-ME3 ; {2} Cre06.g251400.t1.1 ; {2} Cre06.g251400.t1.1 ; {2} Cre06.g251400.t1.2 ; {2} NADP-dependent malic enzyme ; {2} NADP-malic enzyme 3 ; {2} NADP-malic enzyme 3 ; {3} MME6 ; {3} NADP-Malic Enzyme . * Called family CzOrth_5.2-3_00334: AraTha AT2G22240.1 AT4G39800.1 AT5G10170.1, Chlore estExt_fgenesh3_pm.C_20037, ChlRei Cre03.g180250.t1.2.v5.5, ChrZof Cz01g18130.t1@, CocSub 25841.2.0.227, MonNeg MNEG_11783 MNEG_14104&; information: {1} MIPS1 ; {1} MIPS2 ; {1} MIPS3 ; {1} myo-inositol-1-phosphate synthase 1 ; {1} myo-inositol-1-phosphate synthase 2 ; {1} myo-inositol-1-phosphate synthase 3 ; {1} myo-inositol-1-phosphate synthase ; {1} myo-inositol-1-phosphate synthase ; {2} AT2G22240.1 ; {2} AT2G22240.1 ; {2} ATIPS2,ATMIPS2,MIPS2 ; {2} ATIPS2,ATMIPS2,MIPS2 ; {2} Cre03.g180250.t1.1 ; {2} Cre03.g180250.t1.1 ; {2} Cre03.g180250.t1.2 ; {2} myo-inositol-1-phosphate synthase 2 ; {2} myo-inositol-1-phosphate synthase 2 ; {3} Inositol 3-Phosphate Synthase ; {3} IPS . * Called family CzOrth_5.2-3_00346: AraTha AT2G18620.1 AT3G14510.1 AT4G36810.1 AT1G49530.1& AT2G23800.1& AT2G18640.1& AT3G29430.1& AT3G32040.1& AT3G14530.1& AT3G14550.1& AT3G20160.1& AT4G38460.1&, Chlore estExt_Genewise1.C_150062, ChlRei Cre12.g484200.t1.2.v5.5, ChrZof Cz02g19200.t1@, CocSub 12737.2.0.227, MonNeg MNEG_10612 MNEG_2866&; information: {1} Geranylgeranyl diphosphate synthase ; {1} geranylgeranyl diphosphate synthase ; {1} geranylgeranyl pyrophosphate synthase 1 ; {1} geranylgeranyl pyrophosphate synthase 2 ; {1} geranylgeranyl pyrophosphate synthase 3 ; {1} geranylgeranyl pyrophosphate synthase 4 ; {1} geranylgeranyl pyrophosphate synthase 6 ; {1} geranylgeranyl reductase ; {1} GGPS1 ; {1} GGPS2 ; {1} GGPS3 ; {1} GGPS4 ; {1} GGPS6 ; {1} GGR ; {1} hypothetical protein ; {1} Polyprenyl synthetase family protein ; {1} PPS2 ; {1} Terpenoid synthases superfamily protein ; {1} Terpenoid synthases superfamily protein ; {2} AT4G36810.1 ; {2} AT4G36810.1 ; {2} Cre12.g484200.t1.1 ; {2} Cre12.g484200.t1.1 ; {2} Cre12.g484200.t1.2 ; {2} Geranylgeranyl diphosphate synthase ; {2} geranylgeranyl pyrophosphate synthase 1 ; {2} geranylgeranyl pyrophosphate synthase 1 ; {2} GGPS1 ; {2} GGPS1 ; {3} Geranylgeranyl Pyrophosphate Synthase ; {3} GGPS . * Called family CzOrth_5.2-3_00357: AraTha AT1G24280.1 AT5G35790.1 AT5G13110.1 AT1G09420.2&, Chlore IGS.gm_12_00029, ChlRei Cre08.g378150.t1.1.v5.5, ChrZof Cz03g12030.t1@, CocSub 39093.2.0.227, MonNeg MNEG_1337 MNEG_11076&; information: {1} G6PD1 ; {1} G6PD2 ; {1} G6PD3 ; {1} G6PD4 ; {1} GLD2 ; {1} glucose-6-phosphate 1-dehydrogenase ; {1} glucose-6-phosphate 1-dehydrogenase ; {1} glucose-6-phosphate dehydrogenase 1 ; {1} glucose-6-phosphate dehydrogenase 2 ; {1} glucose-6-phosphate dehydrogenase 3 ; {1} glucose-6-phosphate dehydrogenase 4 ; {1} Glucose-6-phosphate dehydrogenase ; {2} AT1G24280.1 ; {2} AT5G13110.1 ; {2} Cre08.g378150.t1.1 ; {2} G6PD2 ; {2} G6PD3 ; {2} glucose-6-phosphate dehydrogenase 2 ; {2} glucose-6-phosphate dehydrogenase 3 ; {2} Glucose-6-phosphate dehydrogenase ; {3} Glucose-6-Phosphate Dehydrogenase ; {3} GPDH1 . * Called family CzOrth_5.2-3_00362: AraTha AT2G40100.1 AT3G08940.2 AT5G01530.1, Chlore estExt_fgenesh3_pm.C_170013, ChlRei Cre17.g720250.t1.2.v5.5, ChrZof Cz03g26240.t1@, CocSub 67011.2.0.227 30169.2.0.227&, MonNeg MNEG_3032 MNEG_12731&; information: {1} Chlorophyll a-b binding protein CP29 ; {1} Chlorophyll a-b binding protein CP29 ; {1} Chlorophyll a/b binding protein of photosystem II ; {1} LHCB4.1 ; {1} LHCB4.2 ; {1} LHCB4.3 ; {1} LHCB4 ; {1} light-harvesting complex photosystem II ; {2} AT2G40100.1 ; {2} AT2G40100.1 ; {2} AT2G40100.1 ; {2} Chlorophyll a/b binding protein of photosystem II ; {2} Chlorophyll a/b binding protein of photosystem II ; {2} Cre17.g720250.t1.1 ; {2} Cre17.g720250.t1.1 ; {2} Cre17.g720250.t1.1 ; {2} Cre17.g720250.t1.2 ; {2} Cre17.g720250.t1.2 ; {2} LHCB4.3 ; {2} LHCB4.3 ; {2} LHCB4.3 ; {2} light harvesting complex photosystem II ; {2} light harvesting complex photosystem II ; {2} light harvesting complex photosystem II ; {3} LHCB4 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_00370: AraTha AT2G43710.2 AT3G02630.1 AT5G16240.1 AT1G43800.1& AT3G02610.1& AT3G02620.1& AT5G16230.1&, Chlore estExt_Genewise1Plus.C_80339 fgenesh3_pm.C_scaffold_5000016&, ChlRei Cre17.g701700.t1.2.v5.5, ChrZof Cz04g09090.t1@, CocSub 53735.2.0.227, MonNeg MNEG_7490 MNEG_9313&; information: {1} acyl-carrier-protein desaturase ; {1} acyl-carrier-protein desaturase ; {1} Plant stearoyl-acyl-carrier-protein desaturase family protein ; {1} Plant stearoyl-acyl-carrier-protein desaturase family protein ; {1} Plastid acyl-ACP desaturase ; {1} SSI2 ; {2} AT2G43710.1 ; {2} AT2G43710.2 ; {2} Cre17.g701700.t1.1 ; {2} Cre17.g701700.t1.1 ; {2} Cre17.g701700.t1.2 ; {2} FAB2,SSI2 ; {2} FAB2,SSI2 ; {2} Plant stearoyl-acyl-carrier-protein desaturase family protein ; {2} Plant stearoyl-acyl-carrier-protein desaturase family protein ; {2} Plastid acyl-ACP desaturase ; {3} SACPD ; {3} Stearoyl ACP Desaturase . * Called family CzOrth_5.2-3_00396: AraTha AT1G03630.1 AT4G27440.1 AT5G54190.1, Chlore IGS.gm_26_00116, ChlRei Cre01.g015350.t1.1.v5.5, ChrZof Cz06g28160.t1@, CocSub 65591.2.0.227, MonNeg MNEG_0122 MNEG_12253&; information: {1} Light-dependent protochlorophyllide reductase ; {1} POR1 ; {1} PORA ; {1} PORB ; {1} POR C ; {1} protochlorophyllide oxidoreductase A ; {1} protochlorophyllide oxidoreductase B ; {1} protochlorophyllide oxidoreductase C ; {1} protochlorophyllide reductase ; {1} protochlorophyllide reductase ; {2} AT5G54190.1 ; {2} AT5G54190.1 ; {2} Cre01.g015350.t1.1 ; {2} Light-dependent protochlorophyllide reductase ; {2} PORA ; {2} PORA ; {2} protochlorophyllide oxidoreductase A ; {2} protochlorophyllide oxidoreductase A ; {3} Light-Dependent Protochlorophyllide Oxidoreductase ; {3} POR . * Called family CzOrth_5.2-3_00431: AraTha AT1G47840.1 AT2G19860.1 AT4G29130.1 AT1G50460.1& AT3G20040.1& AT4G37840.1&, Chlore IGS.gm_14_00328, ChlRei Cre02.g117500.t1.2.v5.5, ChrZof Cz13g07170.t1@, CocSub 24901.2.0.227 35244.2.0.227&, MonNeg MNEG_7991 MNEG_12938&; information: {1} ATHXK4 ; {1} hexokinase 1 ; {1} hexokinase 2 ; {1} hexokinase 3 ; {1} Hexokinase-5 ; {1} Hexokinase ; {1} Hexokinase ; {1} hexokinase-like 1 ; {1} hexokinase-like 3 ; {1} hexokinase ; {1} HKL1 ; {1} HKL3 ; {1} HXK1 ; {1} HXK1 ; {1} HXK2 ; {1} HXK3 ; {2} AT1G47840.1 ; {2} AT4G29130.1 ; {2} AT4G29130.1 ; {2} ATHXK1,GIN2,HXK1 ; {2} ATHXK1,GIN2,HXK1 ; {2} Cre02.g117500.t1.1 ; {2} Cre02.g117500.t1.1 ; {2} Cre02.g117500.t1.1 ; {2} Cre02.g117500.t1.2 ; {2} Cre02.g117500.t1.2 ; {2} hexokinase 1 ; {2} hexokinase 1 ; {2} hexokinase 3 ; {2} Hexokinase ; {2} Hexokinase ; {2} HXK3 ; {3} Hexokinase ; {3} HXK1 . * Called family CzOrth_5.2-3_00443: AraTha AT1G56190.1 AT1G79550.1 AT3G12780.1, Chlore fgenesh3_pm.C_scaffold_2000012, ChlRei Cre11.g467770.t1.1.v5.5, ChrZof Cz16g19260.t1@, CocSub 17028.2.0.227 39868.2.0.227&, MonNeg MNEG_15590 MNEG_5468& MNEG_10576&; information: {1} PGK1 ; {1} PGK1 ; {1} PGK ; {1} phosphoglycerate kinase 1 ; {1} phosphoglycerate kinase ; {1} Phosphoglycerate kinase, chloroplast precursor ; {1} Phosphoglycerate kinase family protein ; {1} phosphoglycerate kinase ; {1} phosphoglycerate kinase ; {2} AT1G56190.1 ; {2} AT1G56190.1 ; {2} AT3G12780.1 ; {2} Cre11.g467770.t1.1 ; {2} Cre11.g467770.t1.1 ; {2} Cre22.g763250.t1.1 ; {2} Cre22.g763250.t1.1 ; {2} Cre22.g763250.t1.1 ; {2} Cre22.g763250.t1.2 ; {2} Cre22.g763250.t1.2 ; {2} Cre22.g763250.t1.2 ; {2} PGK1 ; {2} phosphoglycerate kinase 1 ; {2} Phosphoglycerate kinase, chloroplast precursor ; {2} Phosphoglycerate kinase, chloroplast precursor ; {2} Phosphoglycerate kinase family protein ; {2} Phosphoglycerate kinase family protein ; {3} PGK2 ; {3} Phosphoglycerate Kinase . * Called family CzOrth_5.2-3_00460: AraTha AT4G24810.2 AT5G50330.1, Chlore gw1.37.22.1, ChlRei Cre06.g307100.t1.1.v5.5, ChrZof Cz08g30050.t1@, CocSub 56678.2.0.227 13482.2.0.227 68329.2.0.227&, MonNeg MNEG_1674; information: {1} ABC1/COQ8 Ser/Thr kinase ; {1} AKC2 ; {1} hypothetical protein ; {1} Protein kinase superfamily protein ; {2} ABC1/COQ8 Ser/Thr kinase ; {2} ABC1/COQ8 Ser/Thr kinase ; {2} AT4G24810.2 ; {2} AT4G24810.2 ; {2} AT5G50330.1 ; {2} Cre06.g307100.t1.1 ; {2} Cre06.g307100.t1.1 ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {3} abc1 kinase ; {3} LYSM . * Called family CzOrth_5.2-3_00468: AraTha AT4G19100.1 AT5G52780.1, Chlore estExt_fgenesh3_pg.C_60076 IGS.gm_6_00172, ChlRei Cre07.g329000.t1.2.v5.5, ChrZof Cz02g08100.t1@, CocSub 9085.2.0.227, MonNeg MNEG_0616; information: {1} CPLD47 ; {1} hypothetical protein ; {1} PAM68 ; {1} Predicted membrane protein ; {1} Protein of unknown function (DUF3464) ; {2} AT4G19100.1 ; {2} AT4G19100.1 ; {2} Cre07.g329000.t1.1 ; {2} Cre07.g329000.t1.1 ; {2} Cre07.g329000.t1.2 ; {2} Predicted membrane protein ; {2} Protein of unknown function (DUF3464) ; {2} Protein of unknown function (DUF3464) ; {3} PAM68 ; {3} PsbA Maturation Factor . * Called family CzOrth_5.2-3_00484: AraTha AT2G20260.1 AT4G28750.1, Chlore estExt_Genewise1Plus.C_230103, ChlRei Cre10.g420350.t1.2.v5.5, ChrZof Cz04g01180.t1@, CocSub 18458.2.0.227, MonNeg MNEG_8145 MNEG_14254; information: {1} Photosystem I 8.1 kDa reaction center subunit IV ; {1} Photosystem I reaction center subunit IV ; {1} Photosystem I reaction centre subunit IV / PsaE protein ; {1} photosystem I subunit E-2 ; {1} PSAE-1 ; {1} PSAE-2 ; {1} PSAE ; {2} AT2G20260.1 ; {2} AT4G28750.1 ; {2} Cre10.g420350.t1.1 ; {2} Cre10.g420350.t1.1 ; {2} Cre10.g420350.t1.2 ; {2} Photosystem I 8.1 kDa reaction center subunit IV ; {2} Photosystem I reaction centre subunit IV / PsaE protein ; {2} photosystem I subunit E-2 ; {2} PSAE-1 ; {2} PSAE-2 ; {3} Photosystem I Subunit E ; {3} PSAE . * Called family CzOrth_5.2-3_00487: AraTha AT1G04920.1 AT4G10120.1 AT5G11110.1& AT5G20280.1&, Chlore estExt_Genewise1Plus.C_140436, ChlRei Cre12.g524000.t1.2.v5.5, ChrZof Cz05g24180.t1@, CocSub 48006.2.0.227, MonNeg MNEG_15817 MNEG_16430 MNEG_14606&; information: {1} ATSPS4F ; {1} SPS1F ; {1} SPS2F ; {1} SPS3F ; {1} SUC1 ; {1} sucrose phosphate synthase 1F ; {1} sucrose phosphate synthase 2F ; {1} sucrose phosphate synthase 3F ; {1} Sucrose-phosphate synthase ; {1} Sucrose-phosphate synthase family protein ; {1} sucrose-phosphate synthase ; {1} sucrose-phosphate synthase ; {2} AT1G04920.1 ; {2} AT4G10120.1 ; {2} ATSPS3F,SPS3F ; {2} ATSPS4F ; {2} Cre12.g524000.t1.1 ; {2} Cre12.g524000.t1.1 ; {2} Cre12.g524000.t1.2 ; {2} sucrose phosphate synthase 3F ; {2} Sucrose-phosphate synthase ; {2} Sucrose-phosphate synthase family protein ; {3} GTR7 ; {3} SUC ; {3} Sucrose Synthase . * Called family CzOrth_5.2-3_00489: AraTha AT1G03130.1 AT4G02770.1, Chlore estExt_Genewise1Plus.C_110127, ChlRei Cre05.g238332.t1.1.v5.5, ChrZof Cz05g36030.t1@, CocSub 24389.2.0.227, MonNeg MNEG_5242 MNEG_6871; information: {1} Photosystem I reaction center subunit II, 20 kDa ; {1} Photosystem I reaction center subunit II, chloroplastic ; {1} photosystem I subunit D-1 ; {1} photosystem I subunit D-2 ; {1} PSAD-1 ; {1} PSAD-2 ; {1} PSAD ; {2} AT1G03130.1 ; {2} AT1G03130.1 ; {2} Cre05.g238332.t1.1 ; {2} Cre56.g791050.t1.1 ; {2} Cre56.g791050.t1.1 ; {2} Cre56.g791050.t1.2 ; {2} Cre56.g791050.t1.2 ; {2} Photosystem I reaction center subunit II, 20 kDa ; {2} photosystem I subunit D-2 ; {2} photosystem I subunit D-2 ; {2} PSAD-2 ; {2} PSAD-2 ; {3} Photosystem I Subunit D ; {3} PSAD . * Called family CzOrth_5.2-3_00490: AraTha AT2G21170.1 AT3G55440.1, Chlore estExt_fgenesh3_pm.C_150022, ChlRei Cre01.g029300.t1.2.v5.5, ChrZof Cz06g17270.t1@, CocSub 32333.2.0.227, MonNeg MNEG_4321 MNEG_5195; information: {1} TIM ; {1} TPI1 ; {1} TPI ; {1} triosephosphate isomerase ; {1} Triose phosphate isomerase ; {1} triosephosphate isomerase (TIM) ; {2} AT2G21170.1 ; {2} AT2G21170.1 ; {2} Cre01.g029300.t1.1 ; {2} Cre01.g029300.t1.1 ; {2} Cre01.g029300.t1.2 ; {2} PDTPI,TIM ; {2} PDTPI,TIM ; {2} triosephosphate isomerase ; {2} Triose phosphate isomerase ; {2} triosephosphate isomerase ; {3} TPI ; {3} Triose Phosphate Isomerase . * Called family CzOrth_5.2-3_00492: AraTha AT1G60950.1 AT1G10960.1 AT2G27510.1& AT5G10000.1&, Chlore IGS.gm_22_00102 e_gw1.6.279.1&, ChlRei Cre14.g626700.t1.2.v5.5 Cre12.g487900.t1.2.v5.5& Cre16.g658400.t1.2.v5.5& Cre17.g700950.t1.2.v5.5&, ChrZof Cz07g28150.t1@ Cz13g08120.t1@&, CocSub 25236.2.0.227 31164.2.0.227&, MonNeg MNEG_6237 MNEG_11070 MNEG_4715& MNEG_6007&; information: {1} 2Fe-2S ferredoxin-like superfamily protein ; {1} Apoferredoxin ; {1} FD1 ; {1} FD3 ; {1} FD4 ; {1} FDX2 ; {1} FDX5 ; {1} FED A ; {1} ferredoxin 1 ; {1} ferredoxin 3 ; {1} ferredoxin 4 ; {1} Ferredoxin ; {1} Ferredoxin ; {1} Ferredoxin ; {1} Ferredoxin ; {1} PETF ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} AT1G10960.1 ; {2} AT1G60950.1 ; {2} AT1G60950.1 ; {2} AT1G60950.1 ; {2} AT1G60950.1 ; {2} ATFD1,FD1 ; {2} ATFD2,FED A ; {2} ATFD2,FED A ; {2} ATFD2,FED A ; {2} ATFD2,FED A ; {2} Cre12.g487900.t1.1 ; {2} Cre14.g626700.t1.1 ; {2} Cre14.g626700.t1.1 ; {2} Cre14.g626700.t1.1 ; {2} Cre14.g626700.t1.2 ; {2} Cre14.g626700.t1.2 ; {2} Cre16.g658400.t1.1 ; {2} Cre17.g700950.t1.1 ; {2} ferredoxin 1 ; {2} Ferredoxin ; {2} Ferredoxin ; {3} FDX1 ; {3} FDX2 ; {3} Ferredoxin ; {3} Ferredoxin ; {3} PETF . * Called family CzOrth_5.2-3_00500: AraTha AT3G11670.1 AT4G00550.1, Chlore estExt_Genewise1.C_120107, ChlRei Cre13.g583600.t1.2.v5.5, ChrZof Cz13g19030.t1@, CocSub 49349.2.0.227 2635.2.0.227&, MonNeg MNEG_9619 MNEG_12549; information: {1} DGD1 ; {1} DGD1 ; {1} DGD2 ; {1} digalactosyl diacylglycerol deficient 2 ; {1} Galactolipid galactosyltransferase ; {1} hypothetical protein ; {1} UDP-Glycosyltransferase superfamily protein ; {2} AT3G11670.1 ; {2} AT3G11670.1 ; {2} AT3G11670.1 ; {2} Cre13.g583600.t1.1 ; {2} Cre13.g583600.t1.1 ; {2} Cre13.g583600.t1.1 ; {2} Cre13.g583600.t1.2 ; {2} Cre13.g583600.t1.2 ; {2} DGD1 ; {2} DGD1 ; {2} DGD1 ; {2} Galactolipid galactosyltransferase ; {2} Galactolipid galactosyltransferase ; {2} UDP-Glycosyltransferase superfamily protein ; {2} UDP-Glycosyltransferase superfamily protein ; {2} UDP-Glycosyltransferase superfamily protein ; {3} DGD1 ; {3} DGDG synthase 1 . * Called family CzOrth_5.2-3_00504: AraTha AT5G42480.1 AT3G19180.1&, Chlore fgenesh3_pg.C_scaffold_4000129, ChlRei Cre12.g488500.t1.2.v5.5, ChrZof Cz09g17290.t1@ Cz06g19140.t1@&, CocSub 61625.2.0.227 65723.2.0.227, MonNeg MNEG_4289 MNEG_12833 MNEG_14042&; information: {1} ARC6 ; {1} Chaperone DnaJ-domain superfamily protein ; {1} heat shock protein binding protein, putative ; {1} hypothetical protein ; {1} hypothetical protein ; {1} paralog of ARC6 ; {1} PARC6 ; {2} ARC6 ; {2} ARC6 ; {2} AT5G42480.1 ; {2} AT5G42480.1 ; {2} Chaperone DnaJ-domain superfamily protein ; {2} Chaperone DnaJ-domain superfamily protein ; {2} Cre03.g184500.t1.1 ; {2} Cre03.g184500.t1.2 ; {2} Cre12.g488500.t1.1 ; {3} Accumulation/Replication of Chloroplasts ; {3} Accumulation/Replication of Chloroplasts ; {3} ARC6-1 ; {3} ARC6-2 . * Called family CzOrth_5.2-3_00533: Chlore e_gw1.14.159.1, ChlRei Cre06.g299050.t1.2.v5.5 Cre09.g386912.t1.1.v5.5, ChrZof Cz09g27290.t1@ Cz15g22140.t1@, CocSub 54539.2.0.227 40528.2.0.227& 63373.2.0.227&, MonNeg MNEG_9310 MNEG_13494& MNEG_14492& MNEG_15213&; information: {1} hypothetical protein ; {1} hypothetical protein ; {2} AT3G51520.1 ; {2} AT3G51520.1 ; {2} AT3G51520.1 ; {2} Cre02.g121200.t1.1 ; {2} Cre02.g121200.t1.1 ; {2} Cre02.g121200.t1.1 ; {2} Cre02.g121200.t1.2 ; {2} Cre02.g121200.t1.2 ; {2} Cre02.g121200.t1.2 ; {2} Cre06.g299050.t1.1 ; {2} Cre09.g386912.t1.1 ; {2} Cre09.g386912.t1.1 ; {2} diacylglycerol acyltransferase family ; {2} diacylglycerol acyltransferase family ; {2} diacylglycerol acyltransferase family ; {3} DGAT2D ; {3} DGAT2E ; {3} Diacylglycerol Acyltransferase Type 2 . * Called family CzOrth_5.2-3_00548: AraTha AT1G65080.1 AT3G44370.1&, Chlore IGS.gm_5_00090, ChlRei Cre08.g373583.t1.1.v5.5 Cre03.g198150.t1.1.v5.5&, ChrZof Cz01g09150.t1@ Cz03g01150.t1@, CocSub 67376.2.0.227, MonNeg MNEG_3529; information: {1} hypothetical protein ; {1} Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ; {1} Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ; {2} AT3G44370.1 ; {2} AT3G44370.1 ; {2} AT3G44370.1 ; {2} Cre08.g373583.t1.1 ; {2} Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ; {2} Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ; {2} Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain ; {3} ALB3A ; {3} ALB3B ; {3} Albino-3 ; {3} Albino-4 . * Called family CzOrth_5.2-3_00567: AraTha AT1G80380.2, Chlore estExt_Genewise1.C_50338, ChlRei Cre12.g542300.t1.2.v5.5, ChrZof Cz05g35210.t1@ Cz18g13070.t1@, CocSub 33494.2.0.227, MonNeg MNEG_7953; information: {1} Glycerate kinase ; {1} GYK1 ; {1} hypothetical protein ; {1} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} AT1G80380.2 ; {2} AT1G80380.2 ; {2} Cre12.g542300.t1.1 ; {2} Cre12.g542300.t1.1 ; {2} Cre12.g542300.t1.2 ; {2} Glycerate kinase ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {3} d-glycerate-3-kinase ; {3} GLYK . * Called family CzOrth_5.2-3_00583: AraTha AT1G27480.1, Chlore IGS.gm_7_00085, ChlRei Cre12.g559555.t1.1.v5.5, ChrZof Cz14g23330.t1 Cz17g15210.t1@, CocSub 65109.2.0.227, MonNeg MNEG_2131; information: {1} alpha/beta-Hydrolases superfamily protein ; {1} Phosphatidylcholine-sterol acyltransferase ; {2} alpha/beta-Hydrolases superfamily protein ; {2} AT1G27480.1 ; {2} AT3G44830.1 ; {2} Cre12.g559555.t1.1 ; {2} Lecithin:cholesterol acyltransferase family protein ; {3} LCAT ; {3} Phosphatidylcholine Sterol Acyltransferase . * Called family CzOrth_5.2-3_00591: Chlore fgenesh3_pg.C_scaffold_12000108, ChlRei Cre08.g377300.t1.1.v5.5, ChrZof Cz03g14080.t1@ Cz09g23020.t1@ Cz03g14070.t1& Cz09g23010.t1& Cz10g01120.t1&, CocSub 45509.2.0.227, MonNeg MNEG_5153 MNEG_7513 MNEG_11064& MNEG_11249& MNEG_16510&; information: {1} hypothetical protein ; {1} hypothetical protein ; {2} AT3G51520.1 ; {2} AT3G51520.1 ; {2} Cre08.g377300.t1.1 ; {2} diacylglycerol acyltransferase family ; {2} diacylglycerol acyltransferase family ; {3} DGAT1B ; {3} DGAT1C ; {3} Diacylglycerol Acyltransferase Type 1 . * Called family CzOrth_5.2-3_00600: AraTha AT5G13120.1 AT2G47320.1& AT3G66654.1& AT3G62030.2&, Chlore IGS.gm_5_00436, ChlRei Cre12.g495951.t2.1.v5.5 Cre12.g544150.t1.2.v5.5 Cre12.g544114.t1.1.v5.5 Cre12.g544200.t1.1.v5.5& Cre12.g544113.t1.1.v5.5&, ChrZof Cz16g10200.t1@ Cz07g00040.t1& Cz13g14130.t1&, CocSub 47524.2.0.227, MonNeg MNEG_9718&; information: {1} cyclophilin 20-2 ; {1} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {1} CYP20-2 ; {1} peptidyl-prolyl cis-trans isomerase B (cyclophilin B) ; {1} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {1} ROC4 ; {1} rotamase CYP 4 ; {2} AT5G13120.1 ; {2} AT5G13120.1 ; {2} AT5G13120.1 ; {2} ATCYP20-2,CYP20-2 ; {2} ATCYP20-2,CYP20-2 ; {2} ATCYP20-2,CYP20-2 ; {2} Cre12.g544150.t1.1 ; {2} Cre12.g544150.t1.1 ; {2} Cre12.g544150.t1.2 ; {2} cyclophilin 20-2 ; {2} cyclophilin 20-2 ; {2} cyclophilin 20-2 ; {2} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {3} CYP20 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_00624: AraTha AT5G01220.1 AT1G73160.1& AT4G19460.1& AT5G59070.1&, Chlore estExt_Genewise1.C_290117, ChlRei Cre01.g038550.t1.1.v5.5 Cre16.g689150.t1.2.v5.5, ChrZof Cz07g23140.t1@, CocSub 18860.2.0.227, MonNeg MNEG_4982 MNEG_0303& MNEG_9681&; information: {1} SQD2 ; {1} SQD2 ; {1} SQD3 ; {1} Sulfolipid synthase ; {1} sulfoquinovosyldiacylglycerol 2 ; {1} sulfoquinovosyltransferase ; {1} sulfoquinovosyltransferase ; {1} UDP-Glycosyltransferase superfamily protein ; {2} AT5G01220.1 ; {2} AT5G01220.1 ; {2} Cre16.g689150.t1.1 ; {2} Cre16.g689150.t1.1 ; {2} Cre16.g689150.t1.2 ; {2} SQD2 ; {2} SQD2 ; {2} Sulfolipid synthase ; {2} sulfoquinovosyldiacylglycerol 2 ; {2} sulfoquinovosyldiacylglycerol 2 ; {3} SQD2 ; {3} Sulfolipid Synthase . * Called family CzOrth_5.2-3_00645: AraTha AT2G20900.1 AT4G28130.1 AT5G57690.1 AT2G18730.1& AT4G30340.1&, Chlore IGS.gm_24_00129, ChlRei Cre07.g325550.t1.1.v5.5, ChrZof Cz01g12160.t1@, CocSub 67242.2.0.227; information: {1} DGK3 ; {1} DGK4 ; {1} DGK5 ; {1} DGK6 ; {1} DGK7 ; {1} diacylglycerol kinase 3 ; {1} diacylglycerol kinase 4 ; {1} diacylglycerol kinase 5 ; {1} diacylglycerol kinase 6 ; {1} diacylglycerol kinase 7 ; {1} Diacylglycerol kinase ; {1} KDG3 ; {2} AT5G57690.1 ; {2} AT5G57690.1 ; {2} ATDGK4,DGK4 ; {2} ATDGK4,DGK4 ; {2} Cre07.g325550.t1.1 ; {2} diacylglycerol kinase 4 ; {2} diacylglycerol kinase 4 ; {2} Diacylglycerol kinase ; {3} DGK2 ; {3} Diacylglycerol Kinase . * Called family CzOrth_5.2-3_00652: AraTha AT1G64190.1 AT3G02360.2 AT5G41670.1, Chlore e_gw1.5.405.1, ChlRei Cre12.g526800.t1.2.v5.5, ChrZof Cz05g06160.t1@, CocSub 27305.2.0.227; information: {1} 6-phosphogluconate dehydrogenase, decarboxylating ; {1} 6-phosphogluconate dehydrogenase family protein ; {1} GND1 ; {2} 6-phosphogluconate dehydrogenase, decarboxylating ; {2} 6-phosphogluconate dehydrogenase family protein ; {2} 6-phosphogluconate dehydrogenase family protein ; {2} AT1G64190.1 ; {2} AT5G41670.1 ; {2} Cre12.g526800.t1.1 ; {2} Cre12.g526800.t1.1 ; {2} Cre12.g526800.t1.2 ; {3} 6-Phosphogluconate Dehydrogenase ; {3} GND . * Called family CzOrth_5.2-3_00657: AraTha AT4G22920.1 AT4G11910.1 AT4G11911.1 AT1G44000.1&, Chlore IGS.gm_4_00446, ChlRei Cre12.g487500.t1.1.v5.5, ChrZof Cz10g29110.t1@, CocSub 61770.2.0.227; information: {1} CGL61 ; {1} non-yellowing 1 ; {1} NYE1 ; {1} Predicted protein ; {1} unknown protein ; {1} unknown protein ; {2} AT4G22920.1 ; {2} AT4G22920.1 ; {2} ATNYE1,NYE1 ; {2} ATNYE1,NYE1 ; {2} Cre12.g487500.t1.1 ; {2} non-yellowing 1 ; {2} non-yellowing 1 ; {2} Predicted protein ; {3} SGR1 ; {3} Stay-Green 1 . * Called family CzOrth_5.2-3_00673: AraTha AT2G05710.1 AT4G26970.1 AT4G35830.1, ChlRei Cre01.g042750.t1.2.v5.5, ChrZof Cz13g00140.t1@, CocSub 27212.2.0.227, MonNeg MNEG_3833; information: {1} ACH1 ; {1} ACO1 ; {1} ACO2 ; {1} ACO3 ; {1} aconitase 1 ; {1} aconitase 2 ; {1} aconitase 2 ; {1} aconitase 3 ; {1} Aconitate hydratase ; {2} ACO2 ; {2} ACO2 ; {2} aconitase 2 ; {2} aconitase 2 ; {2} Aconitate hydratase ; {2} AT4G26970.1 ; {2} AT4G26970.1 ; {2} Cre01.g042750.t1.1 ; {2} Cre01.g042750.t1.1 ; {2} Cre01.g042750.t1.2 ; {3} ACH1 ; {3} Aconitase . * Called family CzOrth_5.2-3_00689: AraTha AT4G37870.1 AT5G65690.1, Chlore estExt_fgenesh3_pg.C_10228 fgenesh3_pm.C_scaffold_21000003& IGS.gm_25_00038&, ChlRei Cre02.g141400.t1.2.v5.5, ChrZof Cz01g05160.t1@, CocSub 53066.2.0.227, MonNeg MNEG_2499 MNEG_9496& MNEG_11831& MNEG_13393& MNEG_16741&; information: {1} PCK1 ; {1} PCK1 ; {1} PCK2 ; {1} phosphoenolpyruvate carboxykinase 1 ; {1} phosphoenolpyruvate carboxykinase 2 ; {1} phosphoenolpyruvate carboxykinase (ATP) ; {1} phosphoenolpyruvate carboxykinase (ATP) ; {1} Phosphoenolpyruvate carboxykinase ; {2} AT4G37870.1 ; {2} AT4G37870.1 ; {2} Cre02.g141400.t1.1 ; {2} Cre02.g141400.t1.1 ; {2} Cre02.g141400.t1.2 ; {2} PCK1,PEPCK ; {2} PCK1,PEPCK ; {2} phosphoenolpyruvate carboxykinase 1 ; {2} phosphoenolpyruvate carboxykinase 1 ; {2} Phosphoenolpyruvate carboxykinase ; {3} PCK ; {3} PEP Carboxykinase . * Called family CzOrth_5.2-3_00692: AraTha AT2G22230.1 AT5G10160.1, Chlore estExt_Genewise1Plus.C_50030, ChlRei Cre03.g208050.t1.2.v5.5, ChrZof Cz01g09160.t1@, CocSub 53697.2.0.227, MonNeg MNEG_2847; information: {1} 3R-hydroxymyristoyl ACP dehydrase ; {1} Thioesterase superfamily protein ; {2} AT5G10160.1 ; {2} AT5G10160.1 ; {2} Cre03.g208050.t1.1 ; {2} Cre03.g208050.t1.1 ; {2} Cre03.g208050.t1.2 ; {2} Thioesterase superfamily protein ; {2} Thioesterase superfamily protein ; {3} Beta-Hydroxyacyl ACP Dehydrase/Dehydratase ; {3} FabZ ; {3} HAD1 . * Called family CzOrth_5.2-3_00711: AraTha AT3G19480.1 AT4G34200.1 AT1G01510.1& AT1G17745.2&, Chlore estExt_fgenesh3_pg.C_10033, ChlRei Cre07.g344600.t1.2.v5.5, ChrZof Cz01g24020.t1@, CocSub 52981.2.0.227, MonNeg MNEG_10548 MNEG_13158&; information: {1} AN ; {1} D-3-phosphoglycerate dehydrogenase ; {1} D-3-phosphoglycerate dehydrogenase ; {1} D-3-phosphoglycerate dehydrogenase ; {1} D-3-phosphoglycerate dehydrogenase ; {1} D-3-phosphoglycerate dehydrogenase ; {1} EDA9 ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {1} PGD1 ; {2} AT1G17745.1 ; {2} AT4G34200.1 ; {2} Cre07.g344600.t1.1 ; {2} Cre07.g344600.t1.1 ; {2} Cre07.g344600.t1.2 ; {2} D-3-phosphoglycerate dehydrogenase ; {2} D-3-phosphoglycerate dehydrogenase ; {2} EDA9 ; {2} PGDH ; {3} PGK1 ; {3} Phosphoglycerate Kinase . * Called family CzOrth_5.2-3_00715: AraTha AT5G36700.1 AT5G36790.1 AT5G47760.1&, Chlore estExt_fgenesh3_pg.C_200061, ChlRei Cre03.g168700.t1.2.v5.5 Cre10.g438100.t1.2.v5.5&, ChrZof Cz01g26180.t1@ Cz06g14040.t1& Cz10g15020.t1&, CocSub 61099.2.0.227, MonNeg MNEG_8308 MNEG_4831&; information: {1} 2-phosphoglycolate phosphatase 1 ; {1} 2-phosphoglycolate phosphatase 2 ; {1} 4-nitrophenyl phosphatase ; {1} 4-nitrophenyl phosphatase ; {1} Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ; {1} PGLP1 ; {1} PGLP2 ; {1} PGP1 ; {1} PGP2 ; {1} Phosphoglycolate phosphatase/4-nitrophenylphosphatase ; {1} Phosphoglycolate phosphatase/4-nitrophenylphosphatase ; {2} 2-phosphoglycolate phosphatase 1 ; {2} 2-phosphoglycolate phosphatase 1 ; {2} 2-phosphoglycolate phosphatase 1 ; {2} AT5G36700.1 ; {2} AT5G36700.1 ; {2} AT5G36700.2 ; {2} ATPGLP1,PGLP1 ; {2} ATPGLP1,PGLP1 ; {2} ATPGLP1,PGLP1 ; {2} Cre03.g168700.t1.1 ; {2} Cre03.g168700.t1.1 ; {2} Cre03.g168700.t1.2 ; {2} Cre10.g438100.t1.1 ; {2} Phosphoglycolate phosphatase/4-nitrophenylphosphatase ; {3} PGP1 ; {3} Phosphatidylglycerophosphate Synthase . * Called family CzOrth_5.2-3_00723: AraTha AT5G08300.1 AT5G23250.1, Chlore IGS.gm_31_00076, ChlRei Cre03.g193850.t1.2.v5.5, ChrZof Cz01g33150.t1@, CocSub 54634.2.0.227, MonNeg MNEG_10903 MNEG_14152&; information: {1} SCL1 ; {1} Succinyl-CoA ligase alpha chain ; {1} Succinyl-CoA ligase, alpha subunit ; {1} succinyl-CoA synthetase alpha subunit ; {1} succinyl-CoA synthetase alpha subunit ; {2} AT5G08300.1 ; {2} AT5G08300.1 ; {2} Cre03.g193850.t1.1 ; {2} Cre03.g193850.t1.1 ; {2} Cre03.g193850.t1.2 ; {2} Succinyl-CoA ligase alpha chain ; {2} Succinyl-CoA ligase, alpha subunit ; {2} Succinyl-CoA ligase, alpha subunit ; {3} SCL1 ; {3} Succinyl-CoA Synthetase/Ligase . * Called family CzOrth_5.2-3_00725: AraTha AT1G76100.1 AT1G20340.1, Chlore fgenesh3_kg.C_scaffold_20000002, ChlRei Cre03.g182551.t1.2.v5.5, ChrZof Cz01g35130.t1@, CocSub 20734.2.0.227, MonNeg MNEG_7445; information: {1} Cupredoxin superfamily protein ; {1} DRT112 ; {1} PCY1 ; {1} PETE1 ; {1} plastocyanin 1 ; {1} Plastocyanin ; {1} Pre-apoplastocyanin ; {2} AT1G76100.1 ; {2} AT1G76100.1 ; {2} Cre03.g182551.t1.1 ; {2} Cre03.g182551.t1.1 ; {2} Cre03.g182551.t1.2 ; {2} PETE1 ; {2} PETE1 ; {2} plastocyanin 1 ; {2} plastocyanin 1 ; {2} Pre-apoplastocyanin ; {3} PETE ; {3} Plastocyanin . * Called family CzOrth_5.2-3_00752: AraTha AT1G30510.2 AT4G05390.1 AT1G20020.1& AT5G66190.1&, Chlore estExt_Genewise1Plus.C_70328, ChlRei Cre11.g476750.t1.2.v5.5, ChrZof Cz02g17180.t1@, CocSub 54553.2.0.227, MonNeg MNEG_1346 MNEG_13068&; information: {1} ferredoxin-NADP(+)-oxidoreductase 1 ; {1} ferredoxin-NADP(+)-oxidoreductase 2 ; {1} Ferredoxin-NADP reductase ; {1} ferredoxin--NADP+ reductase ; {1} ferredoxin--NADP+ reductase ; {1} FNR1 ; {1} FNR1 ; {1} FNR2 ; {1} RFNR1 ; {1} RFNR2 ; {1} root FNR 1 ; {1} root FNR 2 ; {2} AT1G30510.2 ; {2} AT4G05390.1 ; {2} ATRFNR1,RFNR1 ; {2} ATRFNR2,RFNR2 ; {2} Cre11.g476750.t1.1 ; {2} Cre11.g476750.t1.1 ; {2} Cre11.g476750.t1.2 ; {2} Ferredoxin-NADP reductase ; {2} root FNR 1 ; {2} root FNR 2 ; {3} Ferredoxin NADP Reductase ; {3} FNR . * Called family CzOrth_5.2-3_00779: AraTha AT2G45290.1 AT3G60750.1, Chlore fgenesh3_pm.C_scaffold_12000020, ChlRei Cre02.g080200.t1.2.v5.5, ChrZof Cz03g04080.t1@, CocSub 54865.2.0.227, MonNeg MNEG_15508; information: {1} Transketolase ; {1} Transketolase ; {1} transketolase ; {1} TRK1 ; {2} AT3G60750.1 ; {2} AT3G60750.1 ; {2} Cre02.g080200.t1.1 ; {2} Cre02.g080200.t1.1 ; {2} Cre02.g080200.t1.2 ; {2} Transketolase ; {2} Transketolase ; {3} Transketolase ; {3} TRK . * Called family CzOrth_5.2-3_00804: AraTha AT1G09780.1 AT3G08590.1, Chlore estExt_Genewise1Plus.C_160124 estExt_Genewise1Plus.C_160133&, ChlRei Cre06.g272050.t1.2.v5.5, ChrZof Cz04g11130.t1@, CocSub 66530.2.0.227 35522.2.0.227&, MonNeg MNEG_3203; information: {1} PGM1 ; {1} Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent ; {1} Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent ; {1} phosphoglycerate mutase ; {2} AT1G09780.1 ; {2} AT3G08590.1 ; {2} AT3G08590.2 ; {2} Cre06.g272050.t1.1 ; {2} Cre06.g272050.t1.1 ; {2} Cre06.g272050.t1.1 ; {2} Cre06.g272050.t1.2 ; {2} Cre06.g272050.t1.2 ; {2} Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent ; {2} Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent ; {2} Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent ; {3} PGM1 ; {3} Phosphoglycerate Mutase . * Called family CzOrth_5.2-3_00813: AraTha AT5G47720.2 AT5G48230.2, Chlore e_gw1.24.93.1, ChlRei Cre02.g146050.t1.2.v5.5, ChrZof Cz04g25080.t1@, CocSub 37141.2.0.227, MonNeg MNEG_7686; information: {1} ACAT2 ; {1} acetoacetyl-CoA thiolase 2 ; {1} acetyl-CoA C-acetyltransferase ; {1} Thiolase family protein ; {2} ACAT2,EMB1276 ; {2} acetoacetyl-CoA thiolase 2 ; {2} AT5G47720.2 ; {2} AT5G48230.2 ; {2} Cre02.g146050.t1.1 ; {2} Cre02.g146050.t1.1 ; {2} Cre02.g146050.t1.2 ; {2} Thiolase family protein ; {3} Acetyl-CoA Acyltransferase/Thiolase ; {3} ATO2 . * Called family CzOrth_5.2-3_00828: AraTha AT4G21280.2 AT4G05180.1 AT1G14150.1& AT2G01918.1& AT3G01440.1&, Chlore IGS.gm_33_00038, ChlRei Cre08.g372450.t1.2.v5.5, ChrZof Cz05g09100.t1 Cz05g13170.t1@&, CocSub 13028.2.0.227, MonNeg MNEG_12625 MNEG_16159&; information: {1} Oxygen-evolving enhancer protein 3, chloroplastic ; {1} Oxygen evolving enhancer protein 3 ; {1} Oxygen-evolving enhancer protein 3 ; {1} photosystem II subunit Q-2 ; {1} photosystem II subunit QA ; {1} PQL1 ; {1} PQL2 ; {1} PQL3 ; {1} PSBQ-2 ; {1} PSBQA ; {1} PSBQ ; {1} PsbQ-like 1 ; {1} PsbQ-like 2 ; {1} PsbQ-like 3 ; {2} AT4G05180.1 ; {2} AT4G05180.1 ; {2} Cre08.g372450.t1.1 ; {2} Cre08.g372450.t1.1 ; {2} Cre08.g372450.t1.2 ; {2} Oxygen evolving enhancer protein 3 ; {2} photosystem II subunit Q-2 ; {2} photosystem II subunit Q-2 ; {2} PSBQ,PSBQ-2,PSII-Q ; {2} PSBQ,PSBQ-2,PSII-Q ; {3} OEE3 ; {3} Photosystem II Subunit Q ; {3} PSBQ . * Called family CzOrth_5.2-3_00829: AraTha AT1G13560.1 AT3G25585.2, Chlore estExt_fgenesh3_pg.C_100146, ChlRei Cre12.g538450.t1.2.v5.5, ChrZof Cz05g09130.t1@, CocSub 53799.2.0.227, MonNeg MNEG_8173 MNEG_8785&; information: {1} AAPT1 ; {1} AAPT2 ; {1} aminoalcoholphosphotransferase 1 ; {1} aminoalcoholphosphotransferase ; {1} CDP-Ethanolamine:DAG Ethanolamine phosphotransferase ; {1} EPT1 ; {1} ethanolaminephosphotransferase ; {1} hypothetical protein ; {2} AAPT1,ATAAPT1 ; {2} AAPT2,ATAAPT2 ; {2} aminoalcoholphosphotransferase 1 ; {2} aminoalcoholphosphotransferase ; {2} AT1G13560.1 ; {2} AT3G25585.2 ; {2} CDP-Ethanolamine:DAG Ethanolamine phosphotransferase ; {2} Cre12.g538450.t1.1 ; {2} Cre12.g538450.t1.1 ; {2} Cre12.g538450.t1.2 ; {3} CDP-Ethanolamine: DAG-Ethanolamine Phosphotransferase ; {3} EPT . * Called family CzOrth_5.2-3_00850: AraTha AT3G05970.1 AT5G27600.1, Chlore estExt_Genewise1.C_220032, ChlRei Cre12.g507400.t1.2.v5.5, ChrZof Cz05g30060.t1@ Cz12g27140.t1&, CocSub 54281.2.0.227, MonNeg MNEG_4636 MNEG_14715& MNEG_15092&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} LACS6 ; {1} LACS7 ; {1} long-chain acyl-CoA synthetase 6 ; {1} long-chain acyl-CoA synthetase 7 ; {2} AT5G27600.1 ; {2} AT5G27600.1 ; {2} ATLACS7,LACS7 ; {2} ATLACS7,LACS7 ; {2} Cre12.g507400.t1.1 ; {2} Cre12.g507400.t1.1 ; {2} Cre12.g507400.t1.2 ; {2} long-chain acyl-CoA synthetase 7 ; {2} long-chain acyl-CoA synthetase 7 ; {3} LACS3 ; {3} Long Chain Acyl-CoA Synthetase . * Called family CzOrth_5.2-3_00853: AraTha AT3G47060.1 AT5G58870.1, Chlore fgenesh3_pg.C_scaffold_7000182, ChlRei Cre02.g078966.t1.1.v5.5, ChrZof Cz05g33210.t1@, CocSub 24964.2.0.227, MonNeg MNEG_1565; information: {1} cell division protease FtsH ; {1} ftsh7 ; {1} ftsh9 ; {1} FTSH protease 7 ; {1} FTSH protease 9 ; {2} AT3G47060.1 ; {2} AT5G58870.1 ; {2} Cre02.g078966.t1.1 ; {2} ftsh7 ; {2} ftsh9 ; {2} FTSH protease 7 ; {2} FTSH protease 9 ; {3} ATP-Dependent Zn Metalloproteinase ; {3} FTSH7 . * Called family CzOrth_5.2-3_00917: AraTha AT3G23710.1 AT4G33350.1, Chlore IGS.gm_23_00029, ChlRei Cre14.g625750.t1.2.v5.5, ChrZof Cz07g31050.t1@, CocSub 58968.2.0.227, MonNeg MNEG_10885; information: {1} 22 kDa translocon at the inner membrane of chloroplasts ; {1} hypothetical protein ; {1} TIC22 ; {1} Tic22-like family protein ; {2} 22 kDa translocon at the inner membrane of chloroplasts ; {2} AT3G23710.1 ; {2} AT3G23710.1 ; {2} Cre14.g625750.t1.1 ; {2} Cre14.g625750.t2.1 ; {2} Tic22-like family protein ; {2} Tic22-like family protein ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC22 . * Called family CzOrth_5.2-3_00931: AraTha AT1G48900.1 AT5G49500.1 AT1G15310.1& AT5G66970.1&, Chlore estExt_Genewise1.C_150001, ChlRei Cre13.g569200.t1.2.v5.5, ChrZof Cz08g20150.t1@, CocSub 53432.2.0.227, MonNeg MNEG_10689 MNEG_14530&; information: {1} ATHSRP54A ; {1} hypothetical protein ; {1} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {1} signal recognition particle 54 kDa subunit ; {1} Signal recognition particle protein ; {1} Signal recognition particle, SRP54 subunit protein ; {1} SRP54 ; {1} Subunit of the Signal Recognition Particle ; {2} AT1G48900.1 ; {2} AT1G48900.1 ; {2} Cre13.g569200.t1.1 ; {2} Cre13.g569200.t1.1 ; {2} Cre13.g569200.t1.2 ; {2} Signal recognition particle, SRP54 subunit protein ; {2} Signal recognition particle, SRP54 subunit protein ; {2} Subunit of the Signal Recognition Particle ; {3} Chloroplast Signal Recognition Particle 54 kDa Subunit ; {3} CPSRP54B . * Called family CzOrth_5.2-3_00946: AraTha AT3G04550.1 AT5G28500.1, Chlore IGS.gm_12_00162, ChlRei Cre06.g308450.t1.2.v5.5, ChrZof Cz09g07180.t1@, CocSub 68156.2.0.227, MonNeg MNEG_0456; information: {1} hypothetical protein ; {1} unknown protein ; {2} AT3G04550.1 ; {2} AT5G28500.1 ; {2} Cre06.g308450.t1.1 ; {2} Cre06.g308450.t1.1 ; {2} Cre06.g308450.t1.2 ; {3} RAF ; {3} Rubisco Accumulation Factor . * Called family CzOrth_5.2-3_00969: AraTha AT1G48430.1 AT3G17770.1, Chlore e_gw1.34.10.1, ChlRei Cre13.g607450.t1.1.v5.5, ChrZof Cz10g02240.t1@, CocSub 35377.2.0.227, MonNeg MNEG_2036; information: {1} DAK1 ; {1} Dihydroxyacetone kinase ; {1} Dihydroxyacetone kinase ; {1} dihydroxyacetone kinase ; {2} AT3G17770.1 ; {2} AT3G17770.1 ; {2} Cre13.g607450.t1.1 ; {2} Dihydroxyacetone kinase ; {2} Dihydroxyacetone kinase ; {3} DAK ; {3} Dihydroxyacetone Kinase . * Called family CzOrth_5.2-3_00985: AraTha AT2G45150.1 AT3G60620.1, Chlore e_gw1.4.181.1, ChlRei Cre12.g489050.t1.2.v5.5, ChrZof Cz10g20080.t1@, CocSub 35823.2.0.227, MonNeg MNEG_8059 MNEG_14107&; information: {1} CDS4 ; {1} CDS5 ; {1} cytidinediphosphate diacylglycerol synthase 4 ; {1} cytidinediphosphate diacylglycerol synthase 5 ; {1} PCT2 ; {1} Phosphatidate cytidylyltransferase ; {1} phosphatidate cytidylyltransferase ; {1} phosphatidate cytidylyltransferase ; {2} AT2G45150.1 ; {2} AT2G45150.3 ; {2} CDS4 ; {2} CDS4 ; {2} Cre12.g489050.t1.1 ; {2} Cre12.g489050.t1.1 ; {2} Cre12.g489050.t1.2 ; {2} cytidinediphosphate diacylglycerol synthase 4 ; {2} cytidinediphosphate diacylglycerol synthase 4 ; {2} Phosphatidate cytidylyltransferase ; {3} Diacylglycerol : Cholinephosphotransferase ; {3} PCT2 . * Called family CzOrth_5.2-3_01010: AraTha AT3G48730.1 AT5G63570.1, Chlore estExt_Genewise1Plus.C_260010 estExt_Genewise1Plus.C_60045&, ChlRei Cre03.g158000.t1.2.v5.5, ChrZof Cz11g23070.t1@, CocSub 29973.2.0.227, MonNeg MNEG_3484; information: {1} glutamate-1-semialdehyde 2,1-aminomutase 2 ; {1} glutamate-1-semialdehyde-2,1-aminomutase ; {1} glutamate-1-semialdehyde2,1-aminomutase ; {1} Glutamate-1-semialdehyde aminotransferase ; {1} GSA1 ; {1} GSA1 ; {1} GSA2 ; {2} AT3G48730.1 ; {2} AT3G48730.1 ; {2} Cre03.g158000.t1.1 ; {2} Cre03.g158000.t1.1 ; {2} Cre03.g158000.t1.2 ; {2} glutamate-1-semialdehyde 2,1-aminomutase 2 ; {2} glutamate-1-semialdehyde 2,1-aminomutase 2 ; {2} Glutamate-1-semialdehyde aminotransferase ; {2} GSA2 ; {2} GSA2 ; {3} Glutamate-Semialdehyde Aminotransferase ; {3} GSA . * Called family CzOrth_5.2-3_01015: AraTha AT5G08410.1 AT5G23440.1, Chlore IGS.gm_3_00437, ChlRei Cre16.g687294.t1.1.v5.5, ChrZof Cz12g03230.t1@, CocSub 55657.2.0.227, MonNeg MNEG_10334; information: {1} ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 ; {1} ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 ; {1} Ferredoxin-thioredoxin reductase, variable chain ; {1} FTRA1 ; {1} FTRA2 ; {2} AT5G23440.1 ; {2} AT5G23440.1 ; {2} Cre16.g687294.t1.1 ; {2} ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 ; {2} ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 ; {2} FTRA1 ; {2} FTRA1 ; {3} Ferredoxin-Thioredoxin Reductase ; {3} FeThRed_A ; {3} FTRV . * Called family CzOrth_5.2-3_01023: AraTha AT1G52230.1 AT3G16140.1, Chlore IGS.gm_3_00590, ChlRei Cre07.g330250.t1.2.v5.5, ChrZof Cz12g12230.t1@, CocSub 53060.2.0.227, MonNeg MNEG_10837; information: {1} Photosystem I reaction center subunit VI ; {1} photosystem I subunit H-1 ; {1} photosystem I subunit H2 ; {1} PSAH-1 ; {1} PSAH2 ; {1} PSAH ; {1} Subunit H of photosystem I ; {2} AT1G52230.1 ; {2} AT3G16140.1 ; {2} Cre07.g330250.t1.1 ; {2} Cre07.g330250.t1.1 ; {2} Cre07.g330250.t1.2 ; {2} photosystem I subunit H-1 ; {2} photosystem I subunit H2 ; {2} PSAH-1 ; {2} PSAH-2,PSAH2,PSI-H ; {2} Subunit H of photosystem I ; {3} Photosystem I Subunit H ; {3} PSAH . * Called family CzOrth_5.2-3_01026: AraTha AT1G69720.1 AT2G26670.1 AT1G58300.1& AT2G26550.1&, Chlore e_gw1.16.135.1 e_gw1.50.6.1&, ChlRei Cre10.g423500.t1.2.v5.5, ChrZof Cz12g15230.t1@, CocSub 44188.2.0.227, MonNeg MNEG_4534; information: {1} heme oxygenase 2 ; {1} heme oxygenase 3 ; {1} heme oxygenase 4 ; {1} Heme oxygenase ; {1} heme oxygenase ; {1} HMO1 ; {1} HO2 ; {1} HO3 ; {1} HO4 ; {1} Plant haem oxygenase (decyclizing) family protein ; {1} TED4 ; {2} AT1G69720.1 ; {2} AT2G26670.1 ; {2} ATHO1,GUN2,HO1,HY1,HY6,TED4 ; {2} Cre10.g423500.t1.1 ; {2} Cre10.g423500.t1.1 ; {2} Cre10.g423500.t1.2 ; {2} heme oxygenase 3 ; {2} Heme oxygenase ; {2} HO3 ; {2} Plant haem oxygenase (decyclizing) family protein ; {3} Heme Oxygenase ; {3} HO . * Called family CzOrth_5.2-3_01028: AraTha AT4G25700.1 AT5G52570.1, Chlore e_gw1.13.95.1, ChlRei Cre04.g215050.t1.2.v5.5, ChrZof Cz12g16080.t1@, CocSub 30875.2.0.227, MonNeg MNEG_1351; information: {1} beta-carotene hydroxylase 2 ; {1} Beta-carotene hydroxylase, putative chloroplast precursor ; {1} beta-hydroxylase 1 ; {1} BETA-OHASE 1 ; {1} BETA-OHASE 2 ; {1} hypothetical protein ; {2} AT4G25700.1 ; {2} AT4G25700.1 ; {2} B1,BCH1,BETA-OHASE 1,chy1 ; {2} B1,BCH1,BETA-OHASE 1,chy1 ; {2} Beta-carotene hydroxylase, putative chloroplast precursor ; {2} beta-hydroxylase 1 ; {2} beta-hydroxylase 1 ; {2} Cre04.g215050.t1.1 ; {2} Cre04.g215050.t1.1 ; {2} Cre04.g215050.t1.2 ; {3} Beta-Carotene Hydroxlase ; {3} CHYB . * Called family CzOrth_5.2-3_01035: AraTha AT1G04980.1 AT2G32920.1, Chlore IGS.gm_18_00102, ChlRei Cre07.g328150.t1.1.v5.5, ChrZof Cz12g23180.t1@, CocSub 37305.2.0.227, MonNeg MNEG_6647; information: {1} PDI4 ; {1} PDIL2-2 ; {1} PDIL2-3 ; {1} PDI-like 2-2 ; {1} PDI-like 2-3 ; {1} Protein disulfide isomerase ; {1} protein disulfide isomerase family A, member 6 ; {2} AT1G04980.1 ; {2} AT2G32920.1 ; {2} ATPDI10,ATPDIL2-2,PDI10,PDIL2-2 ; {2} ATPDI9,ATPDIL2-3,PDI9,PDIL2-3 ; {2} Cre07.g328150.t2.1 ; {2} PDI-like 2-2 ; {2} PDI-like 2-3 ; {2} Protein disulfide isomerase ; {3} PDI4 ; {3} thioredoxin . * Called family CzOrth_5.2-3_01059: AraTha AT1G37150.2 AT2G25710.1, Chlore e_gw1.22.94.1, ChlRei Cre09.g406000.t1.1.v5.5, ChrZof Cz14g10290.t1@, CocSub 18259.2.0.227, MonNeg MNEG_3981; information: {1} Biotin-acetyl-CoA-carboxylase ligase, biotin/lipoate A/B protein ligase ; {1} BPL1 ; {1} HCS1 ; {1} HCS2 ; {1} holocarboxylase synthase 1 ; {1} holocarboxylase synthetase 2 ; {1} hypothetical protein ; {2} AT1G37150.2 ; {2} AT2G25710.2 ; {2} Biotin-acetyl-CoA-carboxylase ligase, biotin/lipoate A/B protein ligase ; {2} Cre09.g406000.t1.1 ; {2} HCS1 ; {2} HCS2 ; {2} holocarboxylase synthase 1 ; {2} holocarboxylase synthetase 2 ; {3} Biotin Acetyl-CoA Ligase ; {3} BPL . * Called family CzOrth_5.2-3_01067: AraTha AT2G13560.1 AT4G00570.1, Chlore IGS.gm_16_00137, ChlRei Cre06.g268750.t1.2.v5.5, ChrZof Cz15g01060.t1@, CocSub 54433.2.0.227, MonNeg MNEG_2849 MNEG_12178&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} Malate dehydrogenase, decarboxylating ; {1} MME1 ; {1} NAD-dependent malic enzyme 1 ; {1} NAD-dependent malic enzyme 2 ; {1} NAD-ME1 ; {1} NAD-ME2 ; {2} AT2G13560.1 ; {2} AT4G00570.1 ; {2} Cre06.g268750.t1.1 ; {2} Cre06.g268750.t1.1 ; {2} Cre06.g268750.t1.2 ; {2} Malate dehydrogenase, decarboxylating ; {2} NAD-dependent malic enzyme 1 ; {2} NAD-dependent malic enzyme 2 ; {2} NAD-ME1 ; {2} NAD-ME2 ; {3} MME1 ; {3} NADP-Malic Enzyme . * Called family CzOrth_5.2-3_01074: AraTha AT3G27380.1 AT5G40650.1 AT5G65165.1&, Chlore e_gw1.9.184.1, ChlRei Cre06.g264200.t1.2.v5.5, ChrZof Cz15g13230.t1@, CocSub 15932.2.0.227, MonNeg MNEG_7619; information: {1} Iron-sulfur subunit of mitochondrial succinate dehydrogenase ; {1} SDH2-1 ; {1} SDH2-2 ; {1} SDH2-3 ; {1} SDH2 ; {1} succinate dehydrogenase 2-1 ; {1} succinate dehydrogenase 2-2 ; {1} succinate dehydrogenase 2-3 ; {1} succinate dehydrogenase (ubiquinone) iron-sulfurprotein ; {2} AT5G40650.1 ; {2} AT5G40650.1 ; {2} Cre06.g264200.t1.1 ; {2} Cre06.g264200.t1.1 ; {2} Cre06.g264200.t1.2 ; {2} Iron-sulfur subunit of mitochondrial succinate dehydrogenase ; {2} SDH2-2 ; {2} SDH2-2 ; {2} succinate dehydrogenase 2-2 ; {2} succinate dehydrogenase 2-2 ; {3} SDHB ; {3} Succinate Dehydrogenase . * Called family CzOrth_5.2-3_01093: AraTha AT3G50820.1 AT5G66570.1, Chlore estExt_Genewise1.C_260092 e_gw1.9.169.1&, ChlRei Cre09.g396213.t1.1.v5.5, ChrZof Cz16g19040.t1@, CocSub 30990.2.0.227 11180.2.0.227&, MonNeg MNEG_10822 MNEG_15796&; information: {1} Oxygen-evolving enhancer protein 1,chloroplastic ; {1} Oxygen-evolving enhancer protein 1 ; {1} Oxygen-evolving enhancer protein 1 of photosystem II ; {1} photosystem II subunit O-2 ; {1} PSBO1 ; {1} PSBO2 ; {1} PSBO ; {1} PS II oxygen-evolving complex 1 ; {2} AT3G50820.1 ; {2} AT5G66570.1 ; {2} AT5G66570.1 ; {2} Cre02.g132800.t1.1 ; {2} Cre02.g132800.t1.1 ; {2} Cre02.g132800.t1.1 ; {2} Cre02.g132800.t1.2 ; {2} Cre02.g132800.t1.2 ; {2} Cre02.g132800.t1.2 ; {2} Cre09.g396213.t1.1 ; {2} Cre09.g396213.t1.1 ; {2} MSP-1,OE33,OEE1,OEE33,PSBO-1,PSBO1 ; {2} MSP-1,OE33,OEE1,OEE33,PSBO-1,PSBO1 ; {2} OEC33,PSBO-2,PSBO2 ; {2} Oxygen-evolving enhancer protein 1 of photosystem II ; {2} Oxygen-evolving enhancer protein 1 of photosystem II ; {2} photosystem II subunit O-2 ; {2} PS II oxygen-evolving complex 1 ; {2} PS II oxygen-evolving complex 1 ; {3} Photosystem II Subunit O ; {3} PSBO . * Called family CzOrth_5.2-3_01101: AraTha AT1G68000.1 AT4G38570.1, Chlore e_gw1.3.762.1, ChlRei Cre10.g419800.t1.2.v5.5, ChrZof Cz17g13240.t1@, CocSub 20883.2.0.227, MonNeg MNEG_2701; information: {1} CDP-diacylglycerol--inositol3- phosphatidyltransferase ; {1} phosphatidylinositol synthase 1 ; {1} Phosphatidylinositol synthase ; {1} PIS1 ; {1} PIS1 ; {1} PIS2 ; {1} probable CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2 ; {2} AT1G68000.1 ; {2} AT1G68000.1 ; {2} ATPIS,ATPIS1,PIS1 ; {2} ATPIS,ATPIS1,PIS1 ; {2} Cre10.g419800.t1.1 ; {2} Cre10.g419800.t1.1 ; {2} Cre10.g419800.t1.2 ; {2} phosphatidylinositol synthase 1 ; {2} phosphatidylinositol synthase 1 ; {2} Phosphatidylinositol synthase ; {3} CDP-DAG:Inositol Phosphatidyltransferase ; {3} PIS . * Called family CzOrth_5.2-3_01109: AraTha AT1G36160.1 AT1G36180.1, Chlore estExt_fgenesh3_pg.C_20193, ChlRei Cre08.g373050.t1.1.v5.5, ChrZof Cz19g10190.t1@, CocSub 26470.2.0.227, MonNeg MNEG_8708; information: {1} ACC1 ; {1} ACC2 ; {1} acetyl-CoA carboxylase 1 ; {1} acetyl-CoA carboxylase 2 ; {1} biotin carboxylase ; {2} ACC1,AT-ACC1,EMB22,GK,PAS3 ; {2} ACC1,AT-ACC1,EMB22,GK,PAS3 ; {2} acetyl-CoA carboxylase 1 ; {2} acetyl-CoA carboxylase 1 ; {2} AT1G36160.1 ; {2} AT1G36160.1 ; {2} Cre08.g373050.t1.1 ; {3} Acetyl-CoA Carboxylase ; {3} ACX3 . * Called family CzOrth_5.2-3_01114: AraTha AT3G03250.1 AT5G17310.2, Chlore estExt_fgenesh3_pg.C_80056 IGS.gm_8_00108&, ChlRei Cre04.g229700.t1.2.v5.5, ChrZof UNPLg00641.t1@, CocSub 53837.2.0.227, MonNeg MNEG_0127; information: {1} UDP-GLUCOSE PYROPHOSPHORYLASE 1 ; {1} UDP-glucose pyrophosphorylase 2 ; {1} UDP-glucose pyrophosphorylase ; {1} UGP1 ; {1} UGP1 ; {1} UGP2 ; {1} UTP--glucose-1-phosphateuridylyltransferase ; {2} AT5G17310.2 ; {2} AT5G17310.2 ; {2} AtUGP2,UGP2 ; {2} AtUGP2,UGP2 ; {2} Cre04.g229700.t1.1 ; {2} Cre04.g229700.t1.1 ; {2} Cre04.g229700.t1.2 ; {2} UDP-glucose pyrophosphorylase 2 ; {2} UDP-glucose pyrophosphorylase 2 ; {2} UDP-glucose pyrophosphorylase ; {3} UDP-Glucose Pyrophosphatase ; {3} UGP . * Called family CzOrth_5.2-3_01116: AraTha AT2G15230.1 AT5G14180.1, Chlore estExt_Genewise1Plus.C_80110, ChlRei Cre12.g498750.t1.1.v5.5 Cre17.g698600.t1.1.v5.5& Cre07.g316526.t1.2.v5.5&, ChrZof Cz02g24260.t1@ Cz02g29090.t1& Cz02g29100.t1& Cz03g32020.t1& Cz05g15040.t1&, MonNeg MNEG_8044 MNEG_14861; information: {1} LIP1 ; {1} LIP2 ; {1} LIP3 ; {1} lipase 1 ; {1} Lipase member M ; {1} MPL1 ; {1} Myzus persicae-induced lipase 1 ; {1} Triacylglycerol lipase ; {1} Triacylglycerol lipase ; {1} triacylglycerol lipase ; {2} AT2G15230.1 ; {2} AT5G14180.1 ; {2} AT5G14180.1 ; {2} ATLIP1,LIP1 ; {2} Cre07.g316526.t1.1 ; {2} lipase 1 ; {2} MPL1 ; {2} MPL1 ; {2} Myzus persicae-induced lipase 1 ; {2} Myzus persicae-induced lipase 1 ; {3} LIPG ; {3} Triacylglycerol Hydrolase . * Called family CzOrth_5.2-3_01128: AraTha AT5G36880.2, Chlore e_gw1.18.26.1 estExt_fgenesh3_pm.C_320006&, ChlRei Cre01.g055408.t1.1.v5.5 Cre07.g353450.t1.2.v5.5&, ChrZof Cz09g15060.t1@ Cz12g10100.t1@&, CocSub 24798.2.0.227 28174.2.0.227, MonNeg MNEG_1378 MNEG_6356& MNEG_7680& MNEG_8920&; information: {1} acetyl-CoA synthetase ; {1} Acetyl-CoA synthetase/ligase ; {1} acetyl-CoA synthetase ; {1} acetyl-CoA synthetase ; {1} ACS3 ; {1} ACS ; {2} acetyl-CoA synthetase ; {2} acetyl-CoA synthetase ; {2} acetyl-CoA synthetase ; {2} Acetyl-CoA synthetase/ligase ; {2} ACS ; {2} ACS ; {2} ACS ; {2} AT5G36880.2 ; {2} AT5G36880.2 ; {2} AT5G36880.2 ; {2} Cre01.g055408.t1.1 ; {2} Cre01.g071662.t1.1 ; {2} Cre07.g353450.t1.1 ; {2} Cre23.g765700.t1.1 ; {2} Cre23.g765700.t1.2 ; {3} Acetyl Co-A Synthase ; {3} ACS1 ; {3} ACS ; {3} chloroplastic, acetyl-coA synthetase . * Called family CzOrth_5.2-3_01134: AraTha AT5G40610.1 AT2G41540.1& AT3G07690.1&, Chlore e_gw1.10.14.1, ChlRei Cre10.g421700.t1.2.v5.5 Cre01.g053000.t1.2.v5.5& Cre01.g053150.t1.2.v5.5&, ChrZof Cz12g24180.t1@, CocSub 47839.2.0.227 42677.2.0.227 55874.2.0.227& 47965.2.0.227& 45847.2.0.227& 48180.2.0.227& 48076.2.0.227& 48123.2.0.227& 48239.2.0.227& 48376.2.0.227& 45740.2.0.227& 48648.2.0.227& 48765.2.0.227& 48890.2.0.227& 48893.2.0.227& 59625.2.0.227& 49269.2.0.227& 49306.2.0.227& 46042.2.0.227& 46512.2.0.227& 46587.2.0.227& 46935.2.0.227& 46967.2.0.227& 47150.2.0.227& 47152.2.0.227& 62824.2.0.227& 47039.2.0.227& 47472.2.0.227& 47663.2.0.227&, MonNeg MNEG_1160; information: {1} 6-phosphogluconate dehydrogenase family protein ; {1} Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase ; {1} Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase ; {1} glycerol-3-phosphate dehydrogenase(NAD+) ; {1} GPD2 ; {1} GPD3 ; {1} GPD4 ; {1} GPDHC1 ; {1} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} AT4G36690.2 ; {2} AT5G40610.1 ; {2} AT5G40610.1 ; {2} AT5G40610.1 ; {2} ATU2AF65A ; {2} Cre01.g053000.t1.1 ; {2} Cre01.g053150.t1.1 ; {2} Cre03.g156100.t1.1 ; {2} Cre03.g156100.t1.2 ; {2} Cre10.g421700.t1.1 ; {2} Cre10.g421700.t1.1 ; {2} Cre10.g421700.t1.2 ; {2} Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase ; {2} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} U2 snRNP auxilliary factor, large subunit, splicing factor ; {3} Glycerol-3-Phosphate Dehydrogenase ; {3} GPD2 . * Called family CzOrth_5.2-3_01152: AraTha AT1G77090.1, Chlore estExt_Genewise1Plus.C_220002, ChlRei Cre03.g198950.t1.2.v5.5, ChrZof Cz01g04150.t1@ Cz01g04160.t1&, CocSub 13998.2.0.227, MonNeg MNEG_1084 MNEG_6681; information: {1} CGL30 ; {1} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {1} Predicted protein ; {1} PsbP domain-containing protein 4 ; {2} AT1G77090.1 ; {2} AT1G77090.1 ; {2} Cre03.g198950.t1.1 ; {2} Cre03.g198950.t1.1 ; {2} Cre03.g198950.t1.2 ; {2} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {2} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {2} Predicted protein ; {3} PPD4 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_01179: AraTha AT3G15850.1 AT1G06080.1& AT1G06090.1& AT1G06100.1& AT1G06120.1& AT1G06350.1& AT1G06360.1& AT2G31360.1& AT3G15870.1&, Chlore estExt_Genewise1Plus.C_30472, ChlRei Cre09.g397250.t1.2.v5.5, ChrZof Cz07g00120.t1@, CocSub 27077.2.0.227, MonNeg MNEG_7868 MNEG_9258 MNEG_0908& MNEG_0909&; information: {1} 16:0delta9 desaturase 2 ; {1} ADS1 ; {1} delta 9 desaturase 1 ; {1} Delta-9 desaturase ; {1} DS2 ; {1} FAD5 ; {1} fatty acid desaturase 5 ; {1} Fatty acid desaturase family protein ; {1} stearoyl-CoA desaturase (delta-9desaturase) ; {1} stearoyl-CoA desaturase (delta-9desaturase) ; {2} ADS3,FAD5,FADB,JB67 ; {2} ADS3,FAD5,FADB,JB67 ; {2} AT3G15850.1 ; {2} AT3G15850.1 ; {2} Cre09.g397250.t1.1 ; {2} Cre09.g397250.t1.1 ; {2} Cre09.g397250.t1.2 ; {2} Delta-9 desaturase ; {2} fatty acid desaturase 5 ; {2} fatty acid desaturase 5 ; {3} FAD5A2 ; {3} Fatty Acid Desaturase, delta-9 . * Called family CzOrth_5.2-3_01188: AraTha AT1G79040.1, Chlore estExt_Genewise1Plus.C_90154, ChlRei Cre06.g261000.t1.2.v5.5, ChrZof Cz09g21140.t1@, CocSub 11354.2.0.227, MonNeg MNEG_3912 MNEG_13633; information: {1} 10 kDa photosystem II polypeptide ; {1} Photosystem II polypeptide, chloroplastic Flags:Precursor ; {1} Photosystem II polypeptide Flags: Precursor ; {1} photosystem II subunit R ; {1} PSBR ; {1} PSBR ; {2} 10 kDa photosystem II polypeptide ; {2} AT1G79040.1 ; {2} AT1G79040.1 ; {2} Cre06.g261000.t1.1 ; {2} Cre06.g261000.t1.1 ; {2} Cre06.g261000.t1.2 ; {2} photosystem II subunit R ; {2} photosystem II subunit R ; {2} PSBR ; {2} PSBR ; {3} Photosystem II Subunit R ; {3} PSBR . * Called family CzOrth_5.2-3_01199: AraTha AT1G31330.1, Chlore estExt_Genewise1.C_30514, ChlRei Cre09.g412100.t1.2.v5.5, ChrZof Cz13g06010.t1@, CocSub 27193.2.0.227, MonNeg MNEG_8301 MNEG_9892; information: {1} Photosystem I reaction center subunit III ; {1} Photosystem I reaction center subunit III ; {1} photosystem I subunit F ; {1} PSAF ; {1} PSAF ; {2} AT1G31330.1 ; {2} AT1G31330.1 ; {2} Cre09.g412100.t1.1 ; {2} Cre09.g412100.t1.1 ; {2} Cre09.g412100.t1.2 ; {2} Photosystem I reaction center subunit III ; {2} photosystem I subunit F ; {2} photosystem I subunit F ; {2} PSAF ; {2} PSAF ; {3} Photosystem I Subunit F ; {3} PSAF . * Called family CzOrth_5.2-3_01211: AraTha AT1G61520.1, Chlore estExt_Genewise1Plus.C_190074, ChlRei Cre11.g467573.t1.1.v5.5, ChrZof Cz16g14150.t1@ Cz08g26140.t1@& Cz14g01080.t1@&, CocSub 37969.2.0.227, MonNeg MNEG_6367 MNEG_8514; information: {1} Chlorophyll a-b binding protein 8, chloroplastic ; {1} Chlorophyll a-b binding protein 8 ; {1} Chlorophyll a/b binding protein of photosystem I, type III ; {1} LHCA3 ; {1} LHCA3 ; {1} photosystem I light-harvesting complex gene 3 ; {2} AT1G61520.1 ; {2} AT1G61520.3 ; {2} Chlorophyll a/b binding protein of photosystem I, type III ; {2} Cre11.g467573.t1.1 ; {2} Cre18.g749750.t1.1 ; {2} Cre18.g749750.t1.1 ; {2} Cre18.g749750.t1.2 ; {2} Cre18.g749750.t1.2 ; {2} LHCA3 ; {2} LHCA3 ; {2} photosystem I light harvesting complex gene 3 ; {2} photosystem I light harvesting complex gene 3 ; {3} LHC10 ; {3} LHC11 ; {3} LHC9 ; {3} lhcb-like 11 ; {3} LHC Proteins Putatively Associated with PSI ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_01212: AraTha AT1G67740.1, Chlore IGS.gm_11_00065, ChlRei Cre10.g452100.t1.1.v5.5, ChrZof Cz17g15140.t1@, CocSub 52123.2.0.227, MonNeg MNEG_6079 MNEG_9979; information: {1} hypothetical protein ; {1} photosystem II BY ; {1} photosystem II PsbY protein ; {1} PSBY2 ; {1} PSBY ; {1} Ycf32-related polyprotein of photosystem II ; {2} AT1G67740.1 ; {2} AT1G67740.1 ; {2} Cre10.g452100.t1.1 ; {2} photosystem II BY ; {2} photosystem II BY ; {2} PSBY,YCF32 ; {2} PSBY,YCF32 ; {2} Ycf32-related polyprotein of photosystem II ; {3} Photosystem II Subunit Y ; {3} PSBY . * Called family CzOrth_5.2-3_01372: AraTha AT1G62430.1 AT4G22340.3 AT4G26770.1&, Chlore IGS.gm_6_00044, ChlRei Cre03.g186200.t1.2.v5.5, ChrZof Cz01g36190.t1@, CocSub 28982.2.0.227; information: {1} CDP-diacylglycerol synthase 1 ; {1} CDS1 ; {1} CDS2 ; {1} cytidinediphosphate diacylglycerol synthase 2 ; {1} PCT1 ; {1} Phosphatidate cytidylyltransferase ; {1} Phosphatidate cytidylyltransferase family protein ; {2} AT4G22340.3 ; {2} AT4G22340.3 ; {2} CDS2 ; {2} CDS2 ; {2} Cre03.g186200.t1.1 ; {2} Cre03.g186200.t1.1 ; {2} Cre03.g186200.t1.2 ; {2} cytidinediphosphate diacylglycerol synthase 2 ; {2} cytidinediphosphate diacylglycerol synthase 2 ; {2} Phosphatidate cytidylyltransferase ; {3} CDP:DAG Synthetase ; {3} CDS ; {3} PCT . * Called family CzOrth_5.2-3_01378: AraTha AT2G42790.1 AT3G58750.1 AT3G58740.1&, Chlore IGS.gm_5_00085, ChlRei Cre03.g149100.t1.2.v5.5, ChrZof Cz02g27080.t1@, CocSub 29458.2.0.227, MonNeg MNEG_3550& MNEG_4308&; information: {1} CIS2 ; {1} citrate synthase 1 ; {1} citrate synthase 2 ; {1} citrate synthase 3 ; {1} Citrate synthase ; {1} citrate synthase ; {1} CSY1 ; {1} CSY2 ; {1} CSY3 ; {1} type II citrate synthase ; {2} AT3G58750.1 ; {2} AT3G58750.1 ; {2} citrate synthase 2 ; {2} citrate synthase 2 ; {2} Citrate synthase ; {2} Cre03.g149100.t1.1 ; {2} Cre03.g149100.t1.1 ; {2} Cre03.g149100.t1.2 ; {2} CSY2 ; {2} CSY2 ; {3} CIT ; {3} Citrate Synthase/Synthetase . * Called family CzOrth_5.2-3_01384: AraTha AT2G18450.1 AT5G66760.1, Chlore estExt_fgenesh3_pm.C_120037, ChlRei Cre14.g619133.t1.1.v5.5, ChrZof Cz03g18320.t1@ Cz04g36210.t1& Cz04g36220.t1&, CocSub 54390.2.0.227, MonNeg MNEG_15042&; information: {1} SDH1-1 ; {1} SDH1-2 ; {1} succinate dehydrogenase 1-1 ; {1} succinate dehydrogenase 1-2 ; {1} succinate dehydrogenase (ubiquinone)flavoproteinsubunit ; {2} AT5G66760.1 ; {2} AT5G66760.1 ; {2} Cre14.g619133.t1.1 ; {2} SDH1-1 ; {2} SDH1-1 ; {2} succinate dehydrogenase 1-1 ; {2} succinate dehydrogenase 1-1 ; {3} SDHA ; {3} Succinate Dehydrogenase . * Called family CzOrth_5.2-3_01393: AraTha AT3G55410.1 AT5G65750.1, Chlore estExt_fgenesh3_pg.C_60190, ChlRei Cre12.g537200.t1.2.v5.5, ChrZof Cz05g03220.t1@, CocSub 47257.2.0.227; information: {1} 2-oxoglutarate dehydrogenase, E1 component ; {1} 2-oxoglutarate dehydrogenase, E1 subunit ; {1} OGD1 ; {2} 2-oxoglutarate dehydrogenase, E1 component ; {2} 2-oxoglutarate dehydrogenase, E1 component ; {2} 2-oxoglutarate dehydrogenase, E1 subunit ; {2} AT5G65750.1 ; {2} AT5G65750.1 ; {2} Cre12.g537200.t1.1 ; {2} Cre12.g537200.t1.1 ; {2} Cre12.g537200.t1.2 ; {3} OGD ; {3} Oxoglutarate-2-Dehydrogenase, E1 Subunit . * Called family CzOrth_5.2-3_01405: AraTha AT3G27300.1 AT5G40760.1, Chlore estExt_Genewise1Plus.C_160204, ChlRei Cre17.g725550.t1.2.v5.5, ChrZof Cz06g12080.t1@, CocSub 66151.2.0.227, MonNeg MNEG_5577&; information: {1} G6PD5 ; {1} G6PD6 ; {1} GLD1 ; {1} Glucose-6-phosphate-1-dehydrogenase ; {1} glucose-6-phosphate 1-dehydrogenase ; {1} glucose-6-phosphate dehydrogenase 5 ; {1} glucose-6-phosphate dehydrogenase 6 ; {2} AT3G27300.1 ; {2} AT5G40760.1 ; {2} Cre08.g378150.t1.1 ; {2} Cre17.g725550.t1.1 ; {2} G6PD5 ; {2} G6PD6 ; {2} glucose-6-phosphate dehydrogenase 5 ; {2} glucose-6-phosphate dehydrogenase 6 ; {2} Glucose-6-phosphate dehydrogenase ; {3} Glucose-6-Phosphate Dehydrogenase ; {3} GPDH2 . * Called family CzOrth_5.2-3_01428: AraTha AT3G09810.1 AT5G03290.1, Chlore estExt_Genewise1Plus.C_60193, ChlRei Cre02.g143250.t1.2.v5.5, ChrZof Cz11g08120.t1@, CocSub 65965.2.0.227, MonNeg MNEG_9184& MNEG_11213&; information: {1} IDH2 ; {1} IDH-V ; {1} IDH-VI ; {1} isocitrate dehydrogenase 3 (NAD+) alpha ; {1} Isocitrate dehydrogenase, NAD-dependent ; {1} isocitrate dehydrogenase (NAD+) ; {1} isocitrate dehydrogenase V ; {1} isocitrate dehydrogenase VI ; {2} AT3G09810.1 ; {2} AT3G09810.1 ; {2} Cre02.g143250.t1.1 ; {2} Cre02.g143250.t1.1 ; {2} Cre02.g143250.t1.2 ; {2} IDH-VI ; {2} IDH-VI ; {2} Isocitrate dehydrogenase, NAD-dependent ; {2} isocitrate dehydrogenase VI ; {2} isocitrate dehydrogenase VI ; {3} IDH1 ; {3} Isocitrate Dehydrogease . * Called family CzOrth_5.2-3_01434: AraTha AT1G01790.1 AT4G00630.2, Chlore estExt_fgenesh3_pg.C_240040, ChlRei Cre04.g220200.t1.2.v5.5, ChrZof Cz13g09190.t1@, CocSub 66826.2.0.227, MonNeg MNEG_7060& MNEG_16466&; information: {1} hypothetical protein ; {1} KEA1 ; {1} KEA2 ; {1} K+ efflux antiporter 1 ; {1} K+ efflux antiporter 2 ; {2} AT1G01790.1 ; {2} AT4G00630.1 ; {2} ATKEA1,KEA1 ; {2} ATKEA2,KEA2 ; {2} Cre04.g220200.t1.1 ; {2} Cre04.g220200.t3.1 ; {2} K+ efflux antiporter 1 ; {2} K+ efflux antiporter 2 ; {3} KEA ; {3} Potassium/Proton Antiporter . * Called family CzOrth_5.2-3_01441: AraTha AT1G69880.1 AT5G39950.1 AT1G59730.1&, Chlore e_gw1.5.457.1, ChlRei Cre05.g248500.t1.2.v5.5, ChrZof Cz14g25110.t1@ Cz01g08250.t1&, CocSub 67188.2.0.227, MonNeg MNEG_3563&; information: {1} Mitochondrial thioredoxin o ; {1} TH7 ; {1} TH8 ; {1} thioredoxin 2 ; {1} thioredoxin H-type 7 ; {1} thioredoxin H-type 8 ; {1} thioredoxin o ; {1} TRX2 ; {2} AT2G35010.1 ; {2} AT5G39950.1 ; {2} ATH2,ATTRX2,ATTRXH2,TRX2,TRXH2 ; {2} ATO1,TO1 ; {2} Cre05.g248500.t1.1 ; {2} Cre05.g248500.t1.1 ; {2} Cre05.g248500.t1.2 ; {2} Mitochondrial thioredoxin o ; {2} thioredoxin 2 ; {2} thioredoxin O1 ; {3} thioredoxin ; {3} TRX1 . * Called family CzOrth_5.2-3_01454: AraTha AT1G04410.1 AT5G43330.1 AT5G56720.1&, Chlore estExt_Genewise1.C_210008, ChlRei Cre02.g145800.t1.2.v5.5, ChrZof UNPLg00180.t1@ Cz11g26100.t1& Cz11g26110.t1&, CocSub 29829.2.0.227 22780.2.0.227&, MonNeg MNEG_15954&; information: {1} Lactate/malate dehydrogenase family protein ; {1} Lactate/malate dehydrogenase family protein ; {1} malate dehydrogenase ; {1} MDH3 ; {1} NAD-dependent malate dehydrogenase ; {2} AT1G04410.1 ; {2} AT5G43330.1 ; {2} AT5G43330.1 ; {2} Cre02.g145800.t1.1 ; {2} Cre02.g145800.t1.1 ; {2} Cre02.g145800.t1.1 ; {2} Cre02.g145800.t1.2 ; {2} Cre02.g145800.t1.2 ; {2} Lactate/malate dehydrogenase family protein ; {2} Lactate/malate dehydrogenase family protein ; {2} Lactate/malate dehydrogenase family protein ; {2} NAD-dependent malate dehydrogenase ; {2} NAD-dependent malate dehydrogenase ; {3} Malate Dehydrogenase ; {3} MDH3 . * Called family CzOrth_5.2-3_01462: AraTha AT1G50250.1 AT5G42270.1 AT1G79560.1& AT5G64580.1&, Chlore IGS.gm_33_00097&, ChlRei Cre12.g485800.t1.2.v5.5, ChrZof Cz02g25060.t1@, CocSub 22106.2.0.227, MonNeg MNEG_4707 MNEG_14707&; information: {1} AAA-type ATPase family protein ; {1} cell division protease FtsH ; {1} cell division protease FtsH ; {1} FHL1 ; {1} FTSH12 ; {1} FTSH1 ; {1} FtsH extracellular protease family ; {1} FtsH-like membrane ATPase/metalloprotease ; {1} FTSH protease 12 ; {1} FTSH protease 1 ; {1} VAR1 ; {2} AT5G42270.1 ; {2} AT5G42270.1 ; {2} Cre12.g485800.t1.1 ; {2} Cre12.g485800.t1.1 ; {2} Cre12.g485800.t1.2 ; {2} FTSH5,VAR1 ; {2} FTSH5,VAR1 ; {2} FtsH extracellular protease family ; {2} FtsH extracellular protease family ; {2} FtsH-like membrane ATPase/metalloprotease ; {3} ATP-Dependent Zn Metalloproteinase ; {3} FTSH-like . * Called family CzOrth_5.2-3_01483: AraTha AT2G46210.1 AT3G61580.1, ChlRei Cre01.g037700.t1.2.v5.5, ChrZof Cz06g12050.t1@ Cz08g26030.t1&, CocSub 52322.2.0.227 47604.2.0.227&, MonNeg MNEG_2324; information: {1} FAD3 ; {1} Fatty acid desaturase; Linoleate desaturase ; {1} Fatty acid/sphingolipid desaturase ; {1} hypothetical protein ; {2} AT2G46210.1 ; {2} AT2G46210.1 ; {2} AT2G46210.1 ; {2} Cre01.g037700.t1.1 ; {2} Cre01.g037700.t1.1 ; {2} Cre01.g037700.t1.1 ; {2} Cre01.g037700.t1.2 ; {2} Cre01.g037700.t1.2 ; {2} Fatty acid desaturase; Linoleate desaturase ; {2} Fatty acid desaturase; Linoleate desaturase ; {2} Fatty acid/sphingolipid desaturase ; {2} Fatty acid/sphingolipid desaturase ; {2} Fatty acid/sphingolipid desaturase ; {3} FAD3-2 ; {3} Fatty Acid Desaturase, delta-6 . * Called family CzOrth_5.2-3_01486: AraTha AT1G04400.2 AT4G08920.1, ChlRei Cre06.g295200.t1.2.v5.5, ChrZof Cz08g14010.t1@ Cz10g15170.t1&, CocSub 1729.2.0.227 45150.2.0.227&, MonNeg MNEG_6484; information: {1} CPH1 ; {1} CRY1 ; {1} CRY2 ; {1} cryptochrome 1 ; {1} Cryptochrome-1 ; {1} cryptochrome 2 ; {1} Cryptochrome photoreceptor ; {2} AT1G04400.1 ; {2} AT4G08920.1 ; {2} AT4G08920.1 ; {2} ATCRY1,BLU1,CRY1,HY4,OOP2 ; {2} ATCRY1,BLU1,CRY1,HY4,OOP2 ; {2} AT-PHH1,ATCRY2,CRY2,FHA,PHH1 ; {2} Cre06.g295200.t1.1 ; {2} Cre06.g295200.t1.1 ; {2} Cre06.g295200.t1.1 ; {2} Cre06.g295200.t1.2 ; {2} Cre06.g295200.t1.2 ; {2} cryptochrome 1 ; {2} cryptochrome 1 ; {2} cryptochrome 2 ; {2} Cryptochrome photoreceptor ; {2} Cryptochrome photoreceptor ; {3} CPH1 ; {3} Cryptochrome . * Called family CzOrth_5.2-3_01504: AraTha AT2G17130.1 AT4G35260.1 AT1G32480.1& AT4G35650.1&, ChlRei Cre17.g728800.t1.2.v5.5, ChrZof Cz11g28180.t1@, CocSub 47333.2.0.227, MonNeg MNEG_0438 MNEG_11126&; information: {1} IDH1 ; {1} IDH1 ; {1} IDH2 ; {1} IDH-III ; {1} IDH-IV ; {1} isocitrate dehydrogenase 1 ; {1} isocitrate dehydrogenase III ; {1} isocitrate dehydrogenase IV ; {1} Isocitrate dehydrogenase, NAD-dependent ; {1} isocitrate dehydrogenase (NAD+) ; {1} isocitrate dehydrogenase (NAD+) ; {1} isocitrate dehydrogenase subunit 2 ; {2} AT4G35260.1 ; {2} AT4G35260.1 ; {2} Cre17.g728800.t1.1 ; {2} Cre17.g728800.t1.1 ; {2} Cre17.g728800.t1.2 ; {2} IDH-I,IDH1 ; {2} IDH-I,IDH1 ; {2} isocitrate dehydrogenase 1 ; {2} isocitrate dehydrogenase 1 ; {2} Isocitrate dehydrogenase, NAD-dependent ; {3} IDH2 ; {3} Isocitrate Dehydrogease . * Called family CzOrth_5.2-3_01513: AraTha AT5G63680.1 AT5G08570.1 AT3G04050.1& AT3G55650.1& AT3G55810.1& AT3G25960.1& AT4G26390.1& AT5G56350.1&, ChlRei Cre12.g533550.t1.1.v5.5, ChrZof Cz16g00040.t1@, CocSub 67234.2.0.227, MonNeg MNEG_1868; information: {1} PYK1 ; {1} Pyruvate kinase ; {1} Pyruvate kinase family protein ; {1} Pyruvate kinase family protein ; {1} pyruvate kinase ; {2} AT5G08570.1 ; {2} AT5G08570.1 ; {2} Cre12.g533550.t1.1 ; {2} Pyruvate kinase ; {2} Pyruvate kinase family protein ; {2} Pyruvate kinase family protein ; {3} PYK5 ; {3} Pyruvate Kinase . * Called family CzOrth_5.2-3_01526: AraTha AT1G63290.1 AT3G01850.1, Chlore fgenesh3_pm.C_scaffold_1000038, ChlRei Cre02.g116450.t1.2.v5.5, ChrZof Cz04g31230.t1@, MonNeg MNEG_8087; information: {1} Aldolase-type TIM barrel family protein ; {1} Ribulose phosphate-3-epimerase ; {1} ribulose-phosphate 3-epimerase ; {1} RPE2 ; {2} Aldolase-type TIM barrel family protein ; {2} AT3G01850.1 ; {2} Cre02.g116450.t1.1 ; {3} Ribulose-5-Phosphate-3-Epimerase ; {3} RPE2 . * Called family CzOrth_5.2-3_01554: AraTha AT2G32640.1, ChlRei Cre06.g264250.t1.1.v5.5, ChrZof Cz07g07080.t1@, CocSub 16852.2.0.227 11899.2.0.227, MonNeg MNEG_11170 MNEG_9915& MNEG_9916&; information: {1} FAD dependent oxidoreductase ; {1} hypothetical protein ; {1} hypothetical protein ; {1} Lycopene beta/epsilon cyclase protein ; {2} AT2G32640.1 ; {2} AT2G32640.1 ; {2} Cre04.g221550.t1.1 ; {2} Cre04.g221550.t1.2 ; {2} Cre06.g264250.t1.1 ; {2} Lycopene beta/epsilon cyclase protein ; {2} Lycopene beta/epsilon cyclase protein ; {3} CRUP ; {3} CruP-Type Lycopene Cyclase Paralog . * Called family CzOrth_5.2-3_01634: AraTha AT1G68750.1, Chlore estExt_fgenesh3_pg.C_200108, ChlRei Cre03.g171950.t1.1.v5.5, ChrZof Cz01g21210.t1@, CocSub 15132.2.0.227, MonNeg MNEG_3630; information: {1} phosphoenolpyruvate carboxylase 4 ; {1} Phosphoenolpyruvate carboxylase ; {1} phosphoenolpyruvate carboxylase ; {1} PPC4 ; {2} AT1G68750.1 ; {2} AT1G68750.1 ; {2} ATPPC4,PPC4 ; {2} ATPPC4,PPC4 ; {2} Cre03.g171950.t1.1 ; {2} phosphoenolpyruvate carboxylase 4 ; {2} phosphoenolpyruvate carboxylase 4 ; {2} Phosphoenolpyruvate carboxylase ; {3} PEPC2 ; {3} PEP Carboxylase . * Called family CzOrth_5.2-3_01654: AraTha AT5G67530.1, Chlore fgenesh3_pm.C_scaffold_28000008, ChlRei Cre10.g457000.t1.1.v5.5, ChrZof Cz01g25140.t1@, CocSub 59621.2.0.227, MonNeg MNEG_15778 MNEG_11789&; information: {1} CYN65 ; {1} peptidyl-prolyl cis-trans isomerase B (cyclophilin B) ; {1} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {1} peptidyl-prolyl cis-trans isomerase-like2 ; {1} plant U-box 49 ; {1} PUB49 ; {2} AT5G67530.1 ; {2} AT5G67530.1 ; {2} ATPUB49,PUB49 ; {2} ATPUB49,PUB49 ; {2} Cre10.g457000.t1.1 ; {2} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {2} plant U-box 49 ; {2} plant U-box 49 ; {3} CYP65 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_01669: AraTha AT1G74070.1, Chlore IGS.gm_1_00058, ChlRei Cre03.g174750.t1.2.v5.5, ChrZof Cz01g30070.t1@, CocSub 14530.2.0.227, MonNeg MNEG_12941; information: {1} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {1} CYN26 ; {1} hypothetical protein ; {1} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {2} AT1G74070.1 ; {2} AT1G74070.1 ; {2} Cre03.g174750.t1.1 ; {2} Cre03.g174750.t1.1 ; {2} Cre03.g174750.t1.2 ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {3} CYP26 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_01677: AraTha AT2G04700.1, Chlore fgenesh3_pg.C_scaffold_14000053, ChlRei Cre03.g193950.t1.2.v5.5, ChrZof Cz01g33170.t1@, CocSub 24815.2.0.227, MonNeg MNEG_0557; information: {1} Ferredoxin thioredoxin reductase, beta subunit ; {1} ferredoxin thioredoxin reductase catalytic beta chain family protein ; {2} AT2G04700.1 ; {2} AT2G04700.1 ; {2} Cre03.g193950.t1.1 ; {2} Cre03.g193950.t1.1 ; {2} Cre03.g193950.t1.2 ; {2} ferredoxin thioredoxin reductase catalytic beta chain family protein ; {2} ferredoxin thioredoxin reductase catalytic beta chain family protein ; {3} Ferredoxin-Thioredoxin Reductase ; {3} FTRC . * Called family CzOrth_5.2-3_01679: AraTha AT5G63290.1, Chlore IGS.gm_22_00036, ChlRei Cre03.g171461.t1.1.v5.5, ChrZof Cz01g34010.t1@, CocSub 36095.2.0.227, MonNeg MNEG_8701; information: {1} oxygen-independent coproporphyrinogenIII oxidase ; {1} Radical SAM superfamily protein ; {2} AT5G63290.1 ; {2} AT5G63290.1 ; {2} Cre03.g171461.t1.1 ; {2} Radical SAM superfamily protein ; {2} Radical SAM superfamily protein ; {3} Coproporphyrinogen-III Oxidase ; {3} CPOX3 . * Called family CzOrth_5.2-3_01696: AraTha AT1G08940.1 AT3G05170.1&, Chlore IGS.gm_11_00400, ChlRei Cre03.g182300.t1.1.v5.5 Cre14.g625150.t1.1.v5.5&, ChrZof Cz01g38050.t1@ Cz03g34020.t1&, CocSub 47475.2.0.227, MonNeg MNEG_3034; information: {1} hypothetical protein ; {1} Phosphoglycerate mutase family protein ; {1} Phosphoglycerate mutase family protein ; {2} AT1G08940.1 ; {2} AT3G05170.1 ; {2} AT3G05170.1 ; {2} Cre03.g182300.t1.1 ; {2} Phosphoglycerate mutase family protein ; {2} Phosphoglycerate mutase family protein ; {2} Phosphoglycerate mutase family protein ; {3} PGM7 ; {3} Phosphoglycerate Mutase . * Called family CzOrth_5.2-3_01705: AraTha AT3G55800.1, Chlore e_gw1.3.230.1, ChlRei Cre03.g185550.t1.2.v5.5, ChrZof Cz01g42020.t1@, CocSub 38677.2.0.227, MonNeg MNEG_4881; information: {1} SBP1 ; {1} SBPASE ; {1} Sedoheptulose-1,7-bisphosphatase ; {1} Sedoheptulose-1,7-bisphosphatase ; {1} sedoheptulose-bisphosphatase ; {2} AT3G55800.1 ; {2} AT3G55800.1 ; {2} Cre03.g185550.t1.1 ; {2} Cre03.g185550.t1.1 ; {2} Cre03.g185550.t1.2 ; {2} SBPASE ; {2} SBPASE ; {2} Sedoheptulose-1,7-bisphosphatase ; {2} sedoheptulose-bisphosphatase ; {2} sedoheptulose-bisphosphatase ; {3} SBP ; {3} Sedoheptulose-1,7-Bisphosphatase . * Called family CzOrth_5.2-3_01733: AraTha AT5G03940.1, Chlore fgenesh3_pm.C_scaffold_7000005, ChlRei Cre11.g479750.t1.2.v5.5, ChrZof Cz02g05130.t1@, CocSub 26298.2.0.227, MonNeg MNEG_1331; information: {1} chloroplast signal recognition particle 54 kDa subunit ; {1} CPSRP54 ; {1} putative Signal recognition particle protein ; {2} 54CP,CPSRP54,FFC,SRP54CP ; {2} 54CP,CPSRP54,FFC,SRP54CP ; {2} AT5G03940.1 ; {2} AT5G03940.1 ; {2} chloroplast signal recognition particle 54 kDa subunit ; {2} chloroplast signal recognition particle 54 kDa subunit ; {2} Cre11.g479750.t1.1 ; {2} Cre11.g479750.t1.1 ; {2} Cre11.g479750.t1.2 ; {3} Chloroplast Signal Recognition Particle 54 kDa Subunit ; {3} CPSRP54A . * Called family CzOrth_5.2-3_01744: AraTha AT3G54660.1, Chlore estExt_Genewise1Plus.C_70099, ChlRei Cre09.g396252.t1.1.v5.5 Cre08.g368400.t1.2.v5.5&, ChrZof Cz02g08150.t1 Cz09g09050.t1@& Cz16g20130.t1&, CocSub 31694.2.0.227 23349.2.0.227&, MonNeg MNEG_0027 MNEG_1022&; information: {1} glutathione reductase ; {1} Glutathione reductase ; {1} Glutathione reductase ; {1} glutathione reductase (NADPH) ; {1} GR ; {1} GSR2 ; {1} NADPH-dependent thioredoxin reductase, selenoprotein ; {1} NTR1 ; {2} AT3G54660.1 ; {2} AT3G54660.1 ; {2} AT3G54660.1 ; {2} AT3G54660.1 ; {2} ATGR2,EMB2360,GR ; {2} ATGR2,EMB2360,GR ; {2} ATGR2,EMB2360,GR ; {2} ATGR2,EMB2360,GR ; {2} Cre02.g132850.t1.1 ; {2} Cre02.g132850.t1.1 ; {2} Cre02.g132850.t1.1 ; {2} Cre02.g132850.t1.2 ; {2} Cre02.g132850.t1.2 ; {2} Cre02.g132850.t1.2 ; {2} Cre08.g368400.t1.1 ; {2} Cre09.g396252.t1.1 ; {2} Cre09.g396252.t1.1 ; {2} glutathione reductase ; {2} glutathione reductase ; {2} glutathione reductase ; {2} Glutathione reductase ; {2} glutathione reductase ; {2} Glutathione reductase ; {3} chloroplastic, glutathione reductase ; {3} GSR . * Called family CzOrth_5.2-3_01752: AraTha AT2G38040.1, Chlore estExt_Genewise1Plus.C_150065, ChlRei Cre12.g519100.t1.2.v5.5, ChrZof Cz02g12030.t1@, CocSub 27575.2.0.227, MonNeg MNEG_14537; information: {1} acetyl-CoA carboxylase carboxyltransferase subunit alpha ; {1} acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit ; {1} CAC3 ; {2} acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit ; {2} acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit ; {2} AT2G38040.1 ; {2} AT2G38040.2 ; {2} CAC3 ; {2} CAC3 ; {2} Cre12.g519100.t1.1 ; {2} Cre12.g519100.t1.1 ; {2} Cre12.g519100.t1.2 ; {3} Acetyl-CoA Carboxylase ; {3} ACX2 . * Called family CzOrth_5.2-3_01761: AraTha AT5G46290.3, Chlore e_gw1.26.70.1, ChlRei Cre11.g467723.t1.1.v5.5, ChrZof Cz02g14160.t1@, CocSub 54810.2.0.227, MonNeg MNEG_5138 MNEG_14071&; information: {1} 3-ketoacyl-acyl carrier protein synthase I ; {1} 3-ketoacyl-CoA-synthase ; {1} 3-oxoacyl-[acyl-carrier-protein]synthase I ; {1} hypothetical protein ; {1} KAS1 ; {1} KAS I ; {2} 3-ketoacyl-acyl carrier protein synthase I ; {2} 3-ketoacyl-acyl carrier protein synthase I ; {2} 3-ketoacyl-CoA-synthase ; {2} AT5G46290.1 ; {2} AT5G46290.1 ; {2} Cre11.g467723.t1.1 ; {2} Cre22.g765250.t1.1 ; {2} Cre22.g765250.t1.1 ; {2} Cre22.g765250.t1.2 ; {2} Cre22.g765250.t1.2 ; {2} KAS I,KAS1 ; {2} KAS I,KAS1 ; {3} Beta-Ketoacyl ACP Synthase ; {3} KAS I . * Called family CzOrth_5.2-3_01774: AraTha AT3G55330.1 AT2G39470.1&, Chlore gw1.8.287.1, ChlRei Cre12.g509050.t1.1.v5.5, ChrZof Cz02g18040.t1@, CocSub 12452.2.0.227, MonNeg MNEG_16440; information: {1} OEE2-like protein of thylakoid lumen ; {1} PPL1 ; {1} PPL2 ; {1} PSBP3 ; {1} PsbP-like protein 1 ; {1} PsbP-like protein 1 ; {1} PsbP-like protein 2 ; {2} AT3G55330.1 ; {2} AT3G55330.1 ; {2} Cre12.g509050.t1.1 ; {2} OEE2-like protein of thylakoid lumen ; {2} PPL1 ; {2} PPL1 ; {2} PsbP-like protein 1 ; {2} PsbP-like protein 1 ; {3} Photosystem II Subunit P ; {3} PSBP1 . * Called family CzOrth_5.2-3_01777: AraTha AT4G12800.1, Chlore estExt_Genewise1.C_250117, ChlRei Cre12.g486300.t1.2.v5.5, ChrZof Cz02g18180.t1@, CocSub 27681.2.0.227, MonNeg MNEG_9482 MNEG_12992&; information: {1} Photosystem I reaction center subunit XI ; {1} Photosystem I reaction center subunit XI ; {1} Photosystem I reaction center subunit XI ; {1} photosystem I subunit l ; {1} PSAL ; {1} PSAL ; {2} AT4G12800.1 ; {2} AT4G12800.1 ; {2} Cre12.g486300.t1.1 ; {2} Cre12.g486300.t1.1 ; {2} Cre12.g486300.t1.2 ; {2} Photosystem I reaction center subunit XI ; {2} photosystem I subunit l ; {2} photosystem I subunit l ; {2} PSAL ; {2} PSAL ; {3} Photosystem I Subunit L ; {3} PSAL . * Called family CzOrth_5.2-3_01797: AraTha AT4G25080.3, Chlore e_gw1.26.145.1, ChlRei Cre12.g498550.t1.1.v5.5, ChrZof Cz02g24270.t1@, CocSub 20752.2.0.227, MonNeg MNEG_15243 MNEG_3633&; information: {1} CHLM ; {1} magnesium-protoporphyrin IX methyltransferase ; {1} Magnesium protoporphyrin O-methyltransferase ; {1} magnesium-protoporphyrinO-methyltransferase ; {1} magnesium-protoporphyrinO-methyltransferase ; {2} AT4G25080.1 ; {2} AT4G25080.1 ; {2} CHLM ; {2} CHLM ; {2} Cre12.g498550.t1.1 ; {2} magnesium-protoporphyrin IX methyltransferase ; {2} magnesium-protoporphyrin IX methyltransferase ; {2} Magnesium protoporphyrin O-methyltransferase ; {3} CHLM ; {3} Mg-Protoporphyrin IX Methyltransferase . * Called family CzOrth_5.2-3_01805: AraTha AT4G32260.1, Chlore estExt_Genewise1.C_250004, ChlRei Cre11.g481450.t1.2.v5.5, ChrZof Cz02g27060.t1@, CocSub 15356.2.0.227, MonNeg MNEG_9969; information: {1} ATPase, F0 complex, subunit B/B', bacterial/chloroplast ; {1} ATPG ; {1} CF0 ATP synthase subunit II precursor ; {1} F-type H+-transporting ATPase subunit b ; {2} AT4G32260.1 ; {2} AT4G32260.1 ; {2} ATPase, F0 complex, subunit B/B\', bacterial/chloroplast ; {2} ATPase, F0 complex, subunit B/B\', bacterial/chloroplast ; {2} CF0 ATP synthase subunit II precursor ; {2} Cre11.g481450.t1.1 ; {2} Cre11.g481450.t1.1 ; {2} Cre11.g481450.t1.2 ; {3} ATPG ; {3} CF0 B' Subunit . * Called family CzOrth_5.2-3_01822: AraTha AT4G14210.1, Chlore estExt_Genewise1Plus.C_40312, ChlRei Cre12.g509650.t1.2.v5.5, ChrZof Cz02g32280.t1@, CocSub 47651.2.0.227, MonNeg MNEG_8557 MNEG_11587&; information: {1} PDS1 ; {1} PDS3 ; {1} phytoene dehydrogenase, phytoenedesaturase ; {1} phytoene desaturase 3 ; {1} Phytoene desaturase ; {1} phytoene desaturase ; {2} AT4G14210.1 ; {2} AT4G14210.1 ; {2} Cre12.g509650.t1.1 ; {2} Cre12.g509650.t1.1 ; {2} Cre12.g509650.t1.2 ; {2} PDE226,PDS,PDS3 ; {2} PDE226,PDS,PDS3 ; {2} phytoene desaturase 3 ; {2} phytoene desaturase 3 ; {2} Phytoene desaturase ; {3} PDS ; {3} Phytoene Desaturase . * Called family CzOrth_5.2-3_01826: AraTha AT3G26710.1, Chlore estExt_Genewise1.C_2210001, ChlRei Cre16.g662150.t1.2.v5.5, ChrZof Cz02g33170.t1@, CocSub 29443.2.0.227, MonNeg MNEG_6075; information: {1} CCB1 ; {1} CCB1 ; {1} cofactor assembly, complex C ; {1} CPLD51 protein, required for cyt b6 assembly ; {1} hypothetical protein ; {2} AT3G26710.1 ; {2} AT3G26710.1 ; {2} CCB1 ; {2} CCB1 ; {2} cofactor assembly of complex C ; {2} cofactor assembly of complex C ; {2} CPLD51 protein, required for cyt b6 assembly ; {2} Cre16.g662150.t1.1 ; {2} Cre16.g662150.t1.1 ; {2} Cre16.g662150.t1.2 ; {3} CCB1 ; {3} CPLD51 ; {3} Cyt c-Type Biogenesis Factor . * Called family CzOrth_5.2-3_01847: AraTha AT4G01690.1 AT5G14220.1&, Chlore estExt_fgenesh3_pg.C_70083, ChlRei Cre09.g396300.t1.2.v5.5, ChrZof Cz02g42010.t1@, CocSub 43582.2.0.227, MonNeg MNEG_8268 MNEG_13825&; information: {1} Flavin containing amine oxidoreductase family ; {1} Flavin containing amine oxidoreductase family ; {1} HEMG2 ; {1} PPOX ; {1} PPX1 ; {1} Protoporphyrinogen oxidase ; {1} protoporphyrinogen oxidase ; {1} protoporphyrinogen oxidase ; {2} AT4G01690.1 ; {2} AT4G01690.1 ; {2} Cre09.g396300.t1.1 ; {2} Cre09.g396300.t1.1 ; {2} Cre09.g396300.t1.2 ; {2} Flavin containing amine oxidoreductase family ; {2} Flavin containing amine oxidoreductase family ; {2} HEMG1,PPO1,PPOX ; {2} HEMG1,PPO1,PPOX ; {2} Protoporphyrinogen oxidase ; {3} PPOX ; {3} Protoporphyrinogen IX Oxidase . * Called family CzOrth_5.2-3_01855: AraTha AT1G58290.1 AT1G09940.1& AT2G31250.1&, Chlore estExt_Genewise1Plus.C_10704, ChlRei Cre07.g342150.t1.2.v5.5, ChrZof Cz03g02090.t1@, CocSub 14561.2.0.227, MonNeg MNEG_4542 MNEG_7284&; information: {1} Glutamyl-tRNA reductase ; {1} Glutamyl-tRNA reductase family protein ; {1} Glutamyl-tRNA reductase family protein ; {1} glutamyl-tRNA reductase ; {1} glutamyl-tRNA reductase ; {1} HEM1 ; {1} HEMA1 ; {1} HEMA2 ; {1} HEMA3 ; {2} AT1G58290.1 ; {2} AT1G58290.1 ; {2} Cre07.g342150.t1.1 ; {2} Cre07.g342150.t1.1 ; {2} Cre07.g342150.t1.2 ; {2} Glutamyl-tRNA reductase ; {2} Glutamyl-tRNA reductase family protein ; {2} Glutamyl-tRNA reductase family protein ; {2} HEMA1 ; {2} HEMA1 ; {3} Glutamyl tRNA Reductase ; {3} GTR3 . * Called family CzOrth_5.2-3_01862: AraTha AT5G18660.1, Chlore estExt_fgenesh3_pm.C_40032, ChlRei Cre01.g042800.t1.2.v5.5, ChrZof Cz03g06230.t1@, CocSub 35797.2.0.227, MonNeg MNEG_2465; information: {1} 3,8-divinyl protochlorophyllide a 8-vinyl reductase ; {1} 3,8-divinyl protochlorophyllide a 8-vinylreductase ; {1} DVR1 ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {1} PCB2 ; {2} 3,8-divinyl protochlorophyllide a 8-vinyl reductase ; {2} AT5G18660.1 ; {2} AT5G18660.1 ; {2} Cre01.g042800.t1.1 ; {2} Cre01.g042800.t1.1 ; {2} Cre01.g042800.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} PCB2 ; {2} PCB2 ; {3} 4VCR ; {3} Divinyl Chlorophyllide a 8-Vinyl Reductase ; {3} DVR . * Called family CzOrth_5.2-3_01872: AraTha AT5G20720.1, Chlore estExt_fgenesh3_kg.C_110007, ChlRei Cre08.g358562.t1.1.v5.5, ChrZof Cz03g10020.t1@, CocSub 66780.2.0.227, MonNeg MNEG_3227; information: {1} chaperonin 20 ; {1} Chaperonin 20 ; {1} chaperonin ; {1} CPN20 ; {1} CPN20 ; {2} AT5G20720.1 ; {2} AT5G20720.1 ; {2} ATCPN21,CHCPN10,CPN10,CPN20,CPN21 ; {2} ATCPN21,CHCPN10,CPN10,CPN20,CPN21 ; {2} chaperonin 20 ; {2} chaperonin 20 ; {2} Chaperonin 20 ; {2} Cre08.g358562.t1.1 ; {2} Cre28.g776900.t1.1 ; {2} Cre28.g776900.t1.1 ; {2} Cre28.g776900.t1.2 ; {2} Cre28.g776900.t1.2 ; {3} chloroplastic 10kda chaperonin ; {3} CPN10 . * Called family CzOrth_5.2-3_01874: AraTha AT2G31040.1, Chlore IGS.gm_23_00138 fgenesh3_pg.C_scaffold_17000099&, ChlRei Cre01.g049600.t1.2.v5.5, ChrZof Cz03g10280.t1@, CocSub 59628.2.0.227, MonNeg MNEG_3582; information: {1} ATP synthase I-like protein ; {1} ATP synthase protein I-related ; {1} CGLD22 ; {1} Expressed protein similar to ATP synthase I ; {2} AT2G31040.1 ; {2} AT2G31040.1 ; {2} ATP synthase protein I -related ; {2} ATP synthase protein I -related ; {2} Cre01.g049600.t1.1 ; {2} Cre01.g049600.t1.1 ; {2} Cre01.g049600.t1.2 ; {2} Expressed protein similar to ATP synthase I ; {3} CGLD22 ; {3} possible atp synthase I . * Called family CzOrth_5.2-3_01884: AraTha AT4G15510.1, Chlore IGS.gm_4_00099, ChlRei Cre08.g362900.t1.1.v5.5, ChrZof Cz03g13190.t1@, CocSub 61374.2.0.227, MonNeg MNEG_11710; information: {1} Lumenal PsbP-like protein ; {1} Photosystem II reaction center PsbP family protein ; {1} PSBP4 ; {1} PsbP domain-containing protein 1 ; {2} AT4G15510.1 ; {2} AT4G15510.3 ; {2} Cre08.g362900.t1.1 ; {2} Lumenal PsbP-like protein ; {2} Photosystem II reaction center PsbP family protein ; {2} Photosystem II reaction center PsbP family protein ; {3} PPD1 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_01890: AraTha AT1G73110.1, Chlore IGS.gm_8_00091 e_gw1.20.112.1&, ChlRei Cre17.g718950.t1.2.v5.5, ChrZof Cz03g15230.t1@, CocSub 11792.2.0.227, MonNeg MNEG_3366; information: {1} hypothetical protein ; {1} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {1} RCA2 ; {1} Rubisco activase-like protein ; {2} AT1G73110.1 ; {2} AT1G73110.1 ; {2} Cre17.g718950.t1.1 ; {2} Cre17.g718950.t1.1 ; {2} Cre17.g718950.t1.2 ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} P-loop containing nucleoside triphosphate hydrolases superfamily protein ; {2} Rubisco activase-like protein ; {3} RCA ; {3} Rubisco activase, chloroplastic . * Called family CzOrth_5.2-3_01907: AraTha AT5G08280.1, Chlore estExt_Genewise1.C_290051, ChlRei Cre16.g663900.t1.2.v5.5 Cre02.g113850.t1.1.v5.5&, ChrZof Cz03g22200.t1@ Cz04g12200.t1@&, CocSub 53003.2.0.227, MonNeg MNEG_6565 MNEG_13064&; information: {1} HEMC ; {1} hydroxymethylbilane synthase ; {1} hydroxymethylbilane synthase ; {1} hypothetical protein ; {1} Porphobilinogen deaminase ; {1} Porphobilinogen deaminase ; {2} AT5G08280.1 ; {2} AT5G08280.1 ; {2} AT5G08280.1 ; {2} Cre16.g663900.t1.1 ; {2} Cre16.g663900.t1.1 ; {2} Cre16.g663900.t1.2 ; {2} HEMC ; {2} HEMC ; {2} HEMC ; {2} hydroxymethylbilane synthase ; {2} hydroxymethylbilane synthase ; {2} hydroxymethylbilane synthase ; {2} Porphobilinogen deaminase ; {3} PBGD1 ; {3} PBGD2 ; {3} Porphobilinogen Deaminase ; {3} Porphobilinogen Deaminase . * Called family CzOrth_5.2-3_01930: AraTha AT4G33030.1, Chlore estExt_fgenesh3_pm.C_280017, ChlRei Cre16.g656400.t1.2.v5.5, ChrZof Cz03g31030.t1@, CocSub 54720.2.0.227, MonNeg MNEG_13380 MNEG_1806&; information: {1} hypothetical protein ; {1} SQD1 ; {1} SQD1 ; {1} sulfoquinovosyldiacylglycerol 1 ; {1} UDP-sulfoquinovose synthase ; {1} UDP-sulfoquinovose synthase ; {2} AT4G33030.1 ; {2} AT4G33030.1 ; {2} Cre16.g656400.t1.1 ; {2} Cre16.g656400.t1.1 ; {2} Cre16.g656400.t1.2 ; {2} SQD1 ; {2} SQD1 ; {2} sulfoquinovosyldiacylglycerol 1 ; {2} sulfoquinovosyldiacylglycerol 1 ; {2} UDP-sulfoquinovose synthase ; {3} SQD1 ; {3} UPD-Sulfoquinovosyl Synthase . * Called family CzOrth_5.2-3_01934: AraTha AT2G20420.1, Chlore IGS.gm_27_00086, ChlRei Cre17.g703700.t1.1.v5.5, ChrZof Cz03g31200.t1@, CocSub 31222.2.0.227, MonNeg MNEG_10882; information: {1} ATP citrate lyase (ACL) family protein ; {1} SCL2 ; {1} Succinate-CoA ligase beta chain ; {1} succinyl-CoA synthetase beta subunit ; {2} AT2G20420.1 ; {2} AT2G20420.1 ; {2} ATP citrate lyase (ACL) family protein ; {2} ATP citrate lyase (ACL) family protein ; {2} Cre17.g703700.t1.1 ; {2} Succinate-CoA ligase beta chain ; {3} SCL2 ; {3} Succinyl-CoA Synthetase/Ligase . * Called family CzOrth_5.2-3_01937: AraTha AT3G12120.1, Chlore fgenesh3_pm.C_scaffold_10000013, ChlRei Cre17.g711150.t1.2.v5.5, ChrZof Cz03g33220.t1@, CocSub 53798.2.0.227, MonNeg MNEG_7806; information: {1} FAD2 ; {1} fatty acid desaturase 2 ; {1} omega-6 fatty acid desaturase (delta-12desaturase) ; {2} AT3G12120.1 ; {2} AT3G12120.2 ; {2} Cre17.g711150.t1.1 ; {2} Cre17.g711150.t1.1 ; {2} Cre17.g711150.t1.2 ; {2} FAD2 ; {2} FAD2 ; {2} fatty acid desaturase 2 ; {2} fatty acid desaturase 2 ; {3} FAD2 ; {3} Fatty Acid Desaturase, omega-6 . * Called family CzOrth_5.2-3_01964: AraTha AT5G51820.1, Chlore estExt_fgenesh3_pg.C_140051, ChlRei Cre06.g278210.t1.1.v5.5, ChrZof Cz04g03150.t1@, CocSub 30193.2.0.227, MonNeg MNEG_3276; information: {1} GPM1 ; {1} PGM ; {1} phosphoglucomutase ; {1} Phosphoglucomutase ; {1} phosphoglucomutase ; {2} AT5G51820.1 ; {2} AT5G51820.1 ; {2} ATPGMP,PGM,PGM1,STF1 ; {2} ATPGMP,PGM,PGM1,STF1 ; {2} Cre06.g278210.t1.1 ; {2} Cre13.g598750.t1.1 ; {2} Cre13.g598750.t1.1 ; {2} phosphoglucomutase ; {2} phosphoglucomutase ; {2} Phosphoglucomutase ; {3} chloroplastic, phosphoglucomutase ; {3} PGM . * Called family CzOrth_5.2-3_01981: AraTha AT3G56650.1, Chlore IGS.gm_11_00071, ChlRei Cre06.g280150.t1.2.v5.5, ChrZof Cz04g08120.t1@, CocSub 68113.2.0.227, MonNeg MNEG_6259; information: {1} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {1} PSBP9 ; {1} PsbP domain-containing protein 6 ; {1} PsbP-like protein ; {2} AT3G56650.1 ; {2} AT3G56650.1 ; {2} Cre06.g280150.t1.1 ; {2} Cre06.g280150.t1.1 ; {2} Cre06.g280150.t1.2 ; {2} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {2} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {2} PsbP-like protein ; {3} PPD6 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_01996: AraTha AT3G05410.2, Chlore IGS.gm_25_00030, ChlRei Cre09.g389578.t1.1.v5.5, ChrZof Cz04g12120.t1@, CocSub 14483.2.0.227, MonNeg MNEG_7443; information: {1} hypothetical protein ; {1} Photosystem II reaction center PsbP family protein ; {1} PSBP5 ; {1} Thylakoid-anchored PsbP-like protein ; {2} AT3G05410.2 ; {2} AT3G05410.2 ; {2} Cre02.g124650.t1.1 ; {2} Cre02.g124650.t1.1 ; {2} Cre09.g389578.t1.1 ; {2} Photosystem II reaction center PsbP family protein ; {2} Photosystem II reaction center PsbP family protein ; {2} Thylakoid-anchored PsbP-like protein ; {3} PPD7 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_02007: AraTha AT3G06350.1, Chlore IGS.gm_5_00383, ChlRei Cre08.g380201.t1.1.v5.5, ChrZof Cz04g15280.t1@, CocSub 14592.2.0.227 17823.2.0.227&, MonNeg MNEG_12000; information: {1} dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative ; {1} dehydroquinate dehydratase/ shikimate dehydrogenase ; {1} MEE32 ; {2} AT3G06350.1 ; {2} AT3G06350.1 ; {2} AT3G06350.1 ; {2} Cre08.g380201.t1.1 ; {2} Cre08.g380201.t1.1 ; {2} dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative ; {2} dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative ; {2} dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative ; {2} EMB3004,MEE32 ; {2} EMB3004,MEE32 ; {2} EMB3004,MEE32 ; {3} AROE ; {3} chloroplastic, shikimate dehydrogenase . * Called family CzOrth_5.2-3_02061: AraTha AT3G24430.1, Chlore IGS.gm_1_00241, ChlRei Cre01.g045902.t1.1.v5.5, ChrZof Cz04g32150.t1@, CocSub 36728.2.0.227, MonNeg MNEG_6458 MNEG_4920&; information: {1} ATP binding ; {1} HCF101 ; {1} hypothetical protein ; {1} putative Protein mrp like protein ; {2} AT3G24430.1 ; {2} AT3G24430.1 ; {2} ATP binding ; {2} ATP binding ; {2} Cre01.g045902.t1.1 ; {2} HCF101 ; {2} HCF101 ; {3} HCF101 ; {3} High Chl Fluorescence 101: 4Fe-4S Scaffold . * Called family CzOrth_5.2-3_02068: AraTha AT5G58330.1, Chlore estExt_Genewise1.C_10544, ChlRei Cre09.g410700.t1.2.v5.5, ChrZof Cz04g33150.t1@, CocSub 36224.2.0.227, MonNeg MNEG_0778; information: {1} hypothetical protein ; {1} lactate/malate dehydrogenase family protein ; {1} MDH5 ; {1} NADP-dependent malate dehydrogenase, chloroplastic ; {2} AT5G58330.1 ; {2} AT5G58330.1 ; {2} Cre09.g410700.t1.1 ; {2} Cre09.g410700.t1.1 ; {2} Cre09.g410700.t1.2 ; {2} lactate/malate dehydrogenase family protein ; {2} lactate/malate dehydrogenase family protein ; {2} NADP-dependent malate dehydrogenase, chloroplastic ; {3} malate dehydrogenase, chloroplastic ; {3} MDH . * Called family CzOrth_5.2-3_02079: AraTha AT2G18710.1, Chlore estExt_fgenesh3_kg.C_40022, ChlRei Cre16.g681900.t1.2.v5.5, ChrZof Cz04g37160.t1@, CocSub 22555.2.0.227, MonNeg MNEG_9346; information: {1} Preprotein translocase secY subunit ; {1} Preprotein translocase subunit secY ; {1} SCY1 ; {1} SCY1 ; {1} SECY homolog 1 ; {2} AT2G18710.1 ; {2} AT2G18710.1 ; {2} Cre16.g681900.t1.1 ; {2} Cre16.g681900.t1.1 ; {2} Cre16.g681900.t1.2 ; {2} Preprotein translocase secY subunit ; {2} SCY1 ; {2} SCY1 ; {2} SECY homolog 1 ; {2} SECY homolog 1 ; {3} Preprotein Translocase SecY ; {3} SECY1 . * Called family CzOrth_5.2-3_02094: AraTha AT5G63060.1, Chlore estExt_Genewise1.C_240149, ChlRei Cre10.g448051.t1.1.v5.5, ChrZof Cz05g05060.t1@, CocSub 35315.2.0.227, MonNeg MNEG_7096; information: {1} Phosphatidylinositol transfer protein CSR1 ; {1} Sec14p-like phosphatidylinositol transfer family protein ; {2} AT5G63060.1 ; {2} AT5G63060.1 ; {2} Cre10.g448051.t1.1 ; {2} Sec14p-like phosphatidylinositol transfer family protein ; {2} Sec14p-like phosphatidylinositol transfer family protein ; {3} Chloroplast Sec14-Like Protein ; {3} CPSFL1 . * Called family CzOrth_5.2-3_02095: AraTha AT2G20890.1, Chlore IGS.gm_6_00251, ChlRei Cre13.g562850.t1.2.v5.5, ChrZof Cz05g05190.t1@, CocSub 28927.2.0.227, MonNeg MNEG_7567 MNEG_8806&; information: {1} photosystem II reaction center PSB29 protein ; {1} PSB29 ; {1} THF1 ; {1} thylakoid formation protein 1 ; {1} thylakoid formation protein 1 ; {1} Thylakoid formation protein ; {2} AT2G20890.1 ; {2} AT2G20890.1 ; {2} Cre13.g562850.t1.1 ; {2} Cre13.g562850.t1.1 ; {2} Cre13.g562850.t1.2 ; {2} photosystem II reaction center PSB29 protein ; {2} photosystem II reaction center PSB29 protein ; {2} PSB29,THF1 ; {2} PSB29,THF1 ; {2} Thylakoid formation protein ; {3} THF1 ; {3} Thylakoid Formation Factor . * Called family CzOrth_5.2-3_02114: AraTha AT5G61410.1, Chlore estExt_fgenesh3_pm.C_40012, ChlRei Cre12.g511900.t1.2.v5.5, ChrZof Cz05g11190.t1@, CocSub 30748.2.0.227, MonNeg MNEG_12520; information: {1} D-ribulose-5-phosphate-3-epimerase ; {1} Ribulose phosphate-3-epimerase, chloroplast precursor ; {1} ribulose-phosphate 3-epimerase ; {1} RPE1 ; {1} RPE ; {2} AT5G61410.1 ; {2} AT5G61410.2 ; {2} Cre12.g511900.t1.1 ; {2} Cre12.g511900.t1.1 ; {2} Cre12.g511900.t1.2 ; {2} D-ribulose-5-phosphate-3-epimerase ; {2} D-ribulose-5-phosphate-3-epimerase ; {2} EMB2728,RPE ; {2} EMB2728,RPE ; {2} Ribulose phosphate-3-epimerase, chloroplast precursor ; {3} Ribulose-5-Phosphate-3-Epimerase ; {3} RPE1 . * Called family CzOrth_5.2-3_02135: AraTha AT2G38670.1, Chlore e_gw1.15.181.1, ChlRei Cre12.g539000.t1.2.v5.5, ChrZof Cz05g17180.t1@, CocSub 65868.2.0.227, MonNeg MNEG_5056 MNEG_3757&; information: {1} Bifunctional protein hldE ; {1} CDP-Ethanolamine synthase ; {1} ECT1 ; {1} ethanolamine-phosphatecytidylyltransferase ; {1} PECT1 ; {1} phosphorylethanolamine cytidylyltransferase 1 ; {2} AT2G38670.1 ; {2} AT2G38670.1 ; {2} CDP-Ethanolamine synthase ; {2} Cre12.g539000.t1.1 ; {2} Cre12.g539000.t1.1 ; {2} Cre12.g539000.t1.2 ; {2} PECT1 ; {2} PECT1 ; {2} phosphorylethanolamine cytidylyltransferase 1 ; {2} phosphorylethanolamine cytidylyltransferase 1 ; {3} CTP:Phosphoethanolamine Cytidylyltransferase ; {3} ECT . * Called family CzOrth_5.2-3_02138: AraTha AT3G21580.1, Chlore estExt_Genewise1.C_50308, ChlRei Cre12.g533950.t1.1.v5.5, ChrZof Cz05g18030.t1@, CocSub 22971.2.0.227, MonNeg MNEG_5052; information: {1} cobalt ion transmembrane transporters ; {1} Cobalt transport protein ; {1} COT1 ; {1} hypothetical protein ; {2} AT3G21580.1 ; {2} AT3G21580.1 ; {2} cobalt ion transmembrane transporters ; {2} cobalt ion transmembrane transporters ; {2} Cobalt transport protein ; {2} Cre12.g533950.t1.1 ; {3} ACBI12 ; {3} CbiQ, chloroplastic . * Called family CzOrth_5.2-3_02200: AraTha AT5G17230.3, Chlore e_gw1.26.122.1, ChlRei Cre02.g095092.t1.1.v5.5, ChrZof Cz05g32230.t1 Cz05g32220.t1@&, CocSub 52083.2.0.227, MonNeg MNEG_12081; information: {1} PHYTOENE SYNTHASE ; {1} Phytoene synthase ; {1} phytoene synthase ; {1} PSY1 ; {1} PSY ; {2} AT5G17230.1 ; {2} AT5G17230.2 ; {2} Cre02.g095092.t1.1 ; {2} Cre11.g472150.t1.1 ; {2} Cre11.g472150.t1.1 ; {2} Cre11.g472150.t1.2 ; {2} Cre11.g472150.t1.2 ; {2} PHYTOENE SYNTHASE ; {2} Phytoene synthase ; {2} PHYTOENE SYNTHASE ; {2} PSY ; {2} PSY ; {3} Phytoene Synthase ; {3} PSY . * Called family CzOrth_5.2-3_02202: AraTha AT4G30600.1, Chlore e_gw1.7.305.1, ChlRei Cre16.g683950.t1.2.v5.5, ChrZof Cz05g34010.t1@, CocSub 36425.2.0.227, MonNeg MNEG_1566; information: {1} Alpha Subunit of the SRP Receptor ; {1} signal recognition particle receptor alpha subunit family protein ; {1} Signal recognition particle receptor subunit alpha ; {1} SRP1 ; {2} Alpha Subunit of the SRP Receptor ; {2} AT4G30600.1 ; {2} AT4G30600.1 ; {2} Cre16.g683950.t1.1 ; {2} Cre16.g683950.t1.1 ; {2} Cre16.g683950.t1.2 ; {2} signal recognition particle receptor alpha subunit family protein ; {2} signal recognition particle receptor alpha subunit family protein ; {3} CPSRP1 ; {3} Signal Recognition Particle Receptor, Alpha Subunit . * Called family CzOrth_5.2-3_02213: AraTha AT1G54500.1, Chlore e_gw1.1.575.1, ChlRei Cre07.g315150.t1.2.v5.5, ChrZof Cz05g36060.t1@, CocSub 14465.2.0.227, MonNeg MNEG_5064; information: {1} RBD1 ; {1} Rubredoxin ; {1} Rubredoxin-like superfamily protein ; {1} Rubredoxin ; {2} AT1G54500.1 ; {2} AT1G54500.1 ; {2} Cre07.g315150.t1.1 ; {2} Cre07.g315150.t1.1 ; {2} Cre07.g315150.t1.2 ; {2} Rubredoxin ; {2} Rubredoxin-like superfamily protein ; {2} Rubredoxin-like superfamily protein ; {3} Chloroplast Rubredoxin ; {3} RBD1 . * Called family CzOrth_5.2-3_02216: AraTha AT1G68830.1, Chlore e_gw1.22.20.1, ChlRei Cre02.g120250.t1.1.v5.5, ChrZof Cz06g00060.t1@, CocSub 14240.2.0.227, MonNeg MNEG_8337; information: {1} Calcium/calmodulin-dependent protein kinase ; {1} Serine/threonine-protein kinase stt7 ; {1} STN7 ; {1} STT7 homolog STN7 ; {2} AT1G68830.1 ; {2} AT1G68830.1 ; {2} Calcium/calmodulin-dependent protein kinase ; {2} Cre02.g120250.t2.1 ; {2} STN7 ; {2} STN7 ; {2} STT7 homolog STN7 ; {2} STT7 homolog STN7 ; {3} Chloroplast Ser-Thr Kinase 7 ; {3} STN7 . * Called family CzOrth_5.2-3_02261: AraTha AT2G04540.1, Chlore estExt_fgenesh3_kg.C_180004 estExt_Genewise1Plus.C_260143& e_gw1.26.192.1& gw1.26.121.1&, ChlRei Cre10.g438050.t1.1.v5.5, ChrZof Cz06g14030.t1@, CocSub 11277.2.0.227, MonNeg MNEG_4830; information: {1} 3-ketoacyl-CoA-synthase ; {1} Beta-ketoacyl synthase ; {2} AT2G04540.1 ; {2} AT2G04540.1 ; {2} Beta-ketoacyl synthase ; {2} Beta-ketoacyl synthase ; {2} Cre10.g438050.t1.1 ; {3} Beta-Ketoacyl ACP Synthase ; {3} KAS X1 . * Called family CzOrth_5.2-3_02275: AraTha AT2G47840.1, Chlore IGS.gm_15_00111, ChlRei Cre01.g039150.t1.2.v5.5, ChrZof Cz06g20080.t1@, CocSub 15264.2.0.227, MonNeg MNEG_10749; information: {1} hypothetical protein ; {1} Tic20-like chloroplast import component protein ; {1} TIC21 ; {1} Uncharacterised conserved protein ycf60 ; {2} AT2G47840.1 ; {2} AT5G55710.1 ; {2} Cre01.g039150.t1.1 ; {2} Cre04.g225050.t1.1 ; {2} Uncharacterised conserved protein ycf60 ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC20 . * Called family CzOrth_5.2-3_02283: AraTha AT4G04870.1, Chlore IGS.gm_6_00508, ChlRei Cre13.g604700.t1.1.v5.5, ChrZof Cz06g21300.t1@, CocSub 41769.2.0.227, MonNeg MNEG_8229; information: {1} cardiolipin synthase ; {1} CLS ; {1} hypothetical protein ; {2} AT4G04870.1 ; {2} AT4G04870.1 ; {2} cardiolipin synthase ; {2} cardiolipin synthase ; {2} CLS ; {2} CLS ; {2} Cre13.g604700.t1.1 ; {3} PGP2 ; {3} Phosphatidylglycerophosphate Synthase . * Called family CzOrth_5.2-3_02292: AraTha AT1G43710.1, Chlore fgenesh3_pg.C_scaffold_18000159, ChlRei Cre01.g038250.t1.2.v5.5, ChrZof Cz06g24140.t1@, CocSub 56802.2.0.227, MonNeg MNEG_7824; information: {1} emb1075 ; {1} histidine decarboxylase ; {1} Pyridoxal phosphate (PLP)-dependent transferases superfamily protein ; {1} SDC1 ; {1} Serine decarboxylase ; {2} AT1G43710.1 ; {2} AT1G43710.1 ; {2} Cre01.g038250.t1.1 ; {2} Cre01.g038250.t1.1 ; {2} Cre01.g038250.t1.2 ; {2} emb1075 ; {2} emb1075 ; {2} Pyridoxal phosphate (PLP)-dependent transferases superfamily protein ; {2} Pyridoxal phosphate (PLP)-dependent transferases superfamily protein ; {2} Serine decarboxylase ; {3} SDC ; {3} Serine Decarboxylase . * Called family CzOrth_5.2-3_02295: AraTha AT1G30380.1, Chlore IGS.gm_18_00073, ChlRei Cre17.g724300.t1.2.v5.5, ChrZof Cz06g26010.t1@, CocSub 48119.2.0.227, MonNeg MNEG_4412 MNEG_8691&; information: {1} Photosystem I reaction center subunit psaK, chloroplastic ; {1} Photosystem I reaction center subunit psaK ; {1} Photosystem I reaction center subunit psaK ; {1} photosystem I subunit K ; {1} PSAK ; {1} PSAK ; {2} AT1G30380.1 ; {2} AT1G30380.1 ; {2} Cre17.g724300.t1.1 ; {2} Cre17.g724300.t1.1 ; {2} Cre17.g724300.t1.2 ; {2} Photosystem I reaction center subunit psaK ; {2} photosystem I subunit K ; {2} photosystem I subunit K ; {2} PSAK ; {2} PSAK ; {3} Photosystem I Subunit K ; {3} PSAK . * Called family CzOrth_5.2-3_02309: AraTha AT1G25350.2 AT5G19720.1&, Chlore estExt_Genewise1.C_40129, ChlRei Cre14.g614900.t1.2.v5.5, ChrZof Cz06g30050.t1@, CocSub 35757.2.0.227, MonNeg MNEG_8762; information: {1} glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative ; {1} glutaminyl-tRNA synthetase ; {1} OVA9 ; {1} Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain ; {2} AT1G25350.1 ; {2} AT1G25350.1 ; {2} Cre14.g614900.t1.1 ; {2} Cre14.g614900.t2.1 ; {2} glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative ; {2} glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative ; {2} OVA9 ; {2} OVA9 ; {3} Glutamyl tRNA Reductase ; {3} GluTR-2 ; {3} GTR2 . * Called family CzOrth_5.2-3_02344: AraTha AT2G47510.1 AT5G50950.1&, Chlore estExt_Genewise1Plus.C_30306, ChlRei Cre01.g020223.t1.1.v5.5, ChrZof Cz07g04030.t1@, CocSub 12444.2.0.227, MonNeg MNEG_9410; information: {1} FUM1 ; {1} FUM2 ; {1} fumarase 1 ; {1} FUMARASE 2 ; {1} fumarate hydratase, class II ; {2} AT5G50950.2 ; {2} AT5G50950.2 ; {2} Cre01.g020223.t1.1 ; {2} FUM2 ; {2} FUM2 ; {2} FUMARASE 2 ; {2} FUMARASE 2 ; {3} Fumarase ; {3} FUM . * Called family CzOrth_5.2-3_02346: AraTha AT3G21720.1, Chlore estExt_Genewise1.C_10061, ChlRei Cre06.g282800.t1.2.v5.5, ChrZof Cz07g04220.t1@, CocSub 17756.2.0.227, MonNeg MNEG_2180; information: {1} ICL1 ; {1} ICL ; {1} isocitrate lyase ; {1} Isocitrate lyase ; {1} isocitrate lyase ; {2} AT3G21720.1 ; {2} AT3G21720.1 ; {2} Cre06.g282800.t1.1 ; {2} Cre06.g282800.t1.1 ; {2} Cre06.g282800.t1.2 ; {2} ICL ; {2} ICL ; {2} isocitrate lyase ; {2} isocitrate lyase ; {2} Isocitrate lyase ; {3} ICL ; {3} Isocitrate Lyase . * Called family CzOrth_5.2-3_02354: AraTha AT4G37200.1 AT5G06430.1&, Chlore gw1.14.278.1, ChlRei Cre17.g702150.t1.2.v5.5, ChrZof Cz07g07160.t1@, CocSub 33821.2.0.227, MonNeg MNEG_0514; information: {1} HCF164 ; {1} thioredoxin-like protein ; {1} Thioredoxin superfamily protein ; {1} Thioredoxin superfamily protein ; {2} AT4G37200.1 ; {2} AT4G37200.1 ; {2} Cre17.g702150.t1.1 ; {2} Cre17.g702150.t1.1 ; {2} Cre17.g702150.t1.2 ; {2} HCF164 ; {2} HCF164 ; {2} Thioredoxin superfamily protein ; {2} Thioredoxin superfamily protein ; {3} HCF164 ; {3} High Chl Fluoresence 164: Trx-Like . * Called family CzOrth_5.2-3_02355: AraTha AT1G32060.1, Chlore estExt_Genewise1.C_100356, ChlRei Cre12.g554800.t1.2.v5.5, ChrZof Cz07g08090.t1 Cz07g08080.t1@&, CocSub 35084.2.0.227, MonNeg MNEG_2418 MNEG_5318&; information: {1} phosphoribulokinase ; {1} Phosphoribulokinase ; {1} phosphoribulokinase ; {1} phosphoribulokinase ; {1} PRK1 ; {1} PRK ; {2} AT1G32060.1 ; {2} AT1G32060.1 ; {2} Cre12.g554800.t1.1 ; {2} Cre12.g554800.t1.1 ; {2} Cre12.g554800.t1.2 ; {2} phosphoribulokinase ; {2} phosphoribulokinase ; {2} Phosphoribulokinase ; {2} PRK ; {2} PRK ; {3} Phosphoribulokinase ; {3} PRK . * Called family CzOrth_5.2-3_02371: AraTha AT1G06680.1 AT2G30790.1&, Chlore IGS.gm_24_00092, ChlRei Cre12.g550850.t1.2.v5.5, ChrZof Cz07g15040.t1@, CocSub 27738.2.0.227 32536.2.0.227&, MonNeg MNEG_0869; information: {1} hypothetical protein ; {1} Oxygen-evolving enhancer protein 2 of photosystem II ; {1} photosystem II subunit P-1 ; {1} photosystem II subunit P-2 ; {1} PSBP-1 ; {1} PSBP1 ; {1} PSBP-2 ; {2} AT1G06680.1 ; {2} AT1G06680.1 ; {2} AT1G06680.1 ; {2} Cre12.g550850.t1.1 ; {2} Cre12.g550850.t1.1 ; {2} Cre12.g550850.t1.1 ; {2} Cre12.g550850.t1.2 ; {2} Cre12.g550850.t1.2 ; {2} OE23,OEE2,PSBP-1,PSII-P ; {2} OE23,OEE2,PSBP-1,PSII-P ; {2} OE23,OEE2,PSBP-1,PSII-P ; {2} Oxygen-evolving enhancer protein 2 of photosystem II ; {2} Oxygen-evolving enhancer protein 2 of photosystem II ; {2} photosystem II subunit P-1 ; {2} photosystem II subunit P-1 ; {2} photosystem II subunit P-1 ; {3} OEE2 ; {3} Photosystem II Subunit P ; {3} PSBP3 . * Called family CzOrth_5.2-3_02384: AraTha AT1G65290.1 AT2G44620.1& AT5G36280.1& AT5G47630.1&, Chlore estExt_fgenesh3_kg.C_30004, ChlRei Cre16.g673109.t1.1.v5.5, ChrZof Cz07g17120.t1@, CocSub 53954.2.0.227, MonNeg MNEG_2196; information: {1} ACP1 ; {1} Acyl-carrier protein, mitochondrial ; {1} mitochondrial acyl carrier protein 1 ; {1} mitochondrial acyl carrier protein 2 ; {1} mitochondrial acyl carrier protein 3 ; {1} MTACP-1 ; {1} mtACP2 ; {1} mtACP3 ; {1} NADH dehydrogenase (ubiquinone) 1alpha/beta subcomplex 1 ; {1} unknown protein ; {2} Acyl-carrier protein, mitochondrial ; {2} AT1G65290.1 ; {2} AT1G65290.1 ; {2} Cre01.g063200.t1.1 ; {2} Cre01.g063200.t1.1 ; {2} Cre01.g063200.t1.2 ; {2} Cre01.g063200.t1.2 ; {2} Cre16.g673109.t1.1 ; {2} mitochondrial acyl carrier protein 2 ; {2} mitochondrial acyl carrier protein 2 ; {2} mtACP2 ; {2} mtACP2 ; {3} ACP1 ; {3} Acyl-Carrier Protein . * Called family CzOrth_5.2-3_02423: AraTha AT5G67030.1, Chlore IGS.gm_21_00210, ChlRei Cre02.g082550.t1.2.v5.5, ChrZof Cz07g30060.t1@, CocSub 42814.2.0.227, MonNeg MNEG_6252; information: {1} ABA1 ; {1} Zeaxanthin epoxidase ; {1} zeaxanthin epoxidase ; {1} zeaxanthin epoxidase (ZEP) (ABA1) ; {1} ZEP1 ; {2} ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP ; {2} ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP ; {2} AT5G67030.1 ; {2} AT5G67030.1 ; {2} Cre02.g082550.t1.1 ; {2} Cre02.g082550.t1.1 ; {2} Cre02.g082550.t1.2 ; {2} Zeaxanthin epoxidase ; {2} zeaxanthin epoxidase (ZEP) (ABA1) ; {2} zeaxanthin epoxidase (ZEP) (ABA1) ; {3} Zeaxanthin Epoxidase ; {3} ZEP1 . * Called family CzOrth_5.2-3_02436: AraTha AT4G13250.1, Chlore estExt_fgenesh3_pg.C_90034, ChlRei Cre12.g517700.t1.2.v5.5, ChrZof Cz08g00200.t1@, CocSub 3542.2.0.227, MonNeg MNEG_2106; information: {1} chlorophyll(ide) b reductase ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {1} NYC1 ; {1} Short-chain dehydrogenase/reductase, probably chlorophyll b reductase ; {2} AT4G13250.1 ; {2} AT4G13250.1 ; {2} Cre12.g517700.t1.1 ; {2} Cre12.g517700.t1.1 ; {2} Cre12.g517700.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NYC1 ; {2} NYC1 ; {2} Short-chain dehydrogenase/reductase, probably chlorophyll b reductase ; {3} Chlorophyllide b Reductase ; {3} NYC1 . * Called family CzOrth_5.2-3_02450: AraTha AT1G08520.1, Chlore fgenesh3_pg.C_scaffold_178000001, ChlRei Cre05.g242000.t1.2.v5.5, ChrZof Cz08g03270.t1@, CocSub 54337.2.0.227, MonNeg MNEG_11934 MNEG_8396& MNEG_16487&; information: {1} ALB1 ; {1} ALBINA 1 ; {1} CHLD ; {1} Magnesium chelatase subunit D ; {1} magnesium chelatase subunit D ; {1} magnesium chelatase subunit D ; {2} ALB-1V,ALB1,CHLD,PDE166,V157 ; {2} ALB-1V,ALB1,CHLD,PDE166,V157 ; {2} ALBINA 1 ; {2} ALBINA 1 ; {2} AT1G08520.1 ; {2} AT1G08520.1 ; {2} Cre05.g242000.t1.1 ; {2} Cre05.g242000.t1.1 ; {2} Cre05.g242000.t1.2 ; {2} Magnesium chelatase subunit D ; {3} CHLD ; {3} Mg-Chelatase Subunit D . * Called family CzOrth_5.2-3_02456: AraTha AT2G33040.1, Chlore estExt_Genewise1.C_170035, ChlRei Cre15.g635850.t1.2.v5.5, ChrZof Cz08g05010.t1@, CocSub 28042.2.0.227, MonNeg MNEG_9813 MNEG_3198& MNEG_6525& MNEG_7127& MNEG_11464& MNEG_13635&; information: {1} ATP3 ; {1} ATP3 ; {1} F-type H+-transporting ATPase subunit gamma ; {1} F-type H+-transporting ATPase subunit gamma ; {1} gamma subunit of Mt ATP synthase ; {1} hypothetical protein ; {1} Mitochondrial F1F0 ATP synthase, gamma subunit ; {2} AT2G33040.1 ; {2} AT2G33040.1 ; {2} ATP3 ; {2} ATP3 ; {2} Cre15.g635850.t1.1 ; {2} Cre15.g635850.t2.1 ; {2} gamma subunit of Mt ATP synthase ; {2} gamma subunit of Mt ATP synthase ; {2} Mitochondrial F1F0 ATP synthase, gamma subunit ; {3} ATPC-2 ; {3} CF1 Gamma Subunit . * Called family CzOrth_5.2-3_02470: AraTha AT4G10340.1, Chlore estExt_Genewise1Plus.C_120416, ChlRei Cre16.g673650.t1.1.v5.5, ChrZof Cz08g11160.t1@, CocSub 64185.2.0.227, MonNeg MNEG_13703 MNEG_6262& MNEG_15453&; information: {1} chlorophyll a/b-binding apoprotein CP26 precursor ; {1} chlorophyll a/b-binding apoprotein CP26 precursor ; {1} hypothetical protein ; {1} LHCB5 ; {1} LHCB5 ; {1} light-harvesting complex of photosystem II 5 ; {1} Minor chlorophyll a/b binding protein of photosystem II ; {2} AT4G10340.1 ; {2} AT4G10340.1 ; {2} Cre16.g673650.t1.1 ; {2} LHCB5 ; {2} LHCB5 ; {2} light harvesting complex of photosystem II 5 ; {2} light harvesting complex of photosystem II 5 ; {2} Minor chlorophyll a/b binding protein of photosystem II ; {3} CP26 ; {3} LHCB5 ; {3} Minor PSII Antenna Complex CP26 . * Called family CzOrth_5.2-3_02516: AraTha AT2G15290.1, Chlore IGS.gm_2_00065 IGS.gm_3_00696&, ChlRei Cre11.g467759.t1.1.v5.5 Cre10.g454734.t1.1.v5.5& Cre01.g039450.t1.1.v5.5& Cre03.g146667.t1.1.v5.5& Cre03.g146827.t1.1.v5.5&, ChrZof Cz08g26130.t1@, CocSub 19300.2.0.227, MonNeg MNEG_9745 MNEG_0949&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} TIC21 ; {1} translocon at inner membrane of chloroplasts 21 ; {2} AT1G61520.1 ; {2} AT2G15290.1 ; {2} AT2G15290.1 ; {2} ATTIC21,CIA5,PIC1,TIC21 ; {2} ATTIC21,CIA5,PIC1,TIC21 ; {2} Cre01.g062100.t1.1 ; {2} Cre01.g062500.t1.1 ; {2} Cre01.g062500.t1.2 ; {2} Cre10.g454734.t1.1 ; {2} Cre22.g763750.t1.1 ; {2} LHCA3 ; {2} photosystem I light harvesting complex gene 3 ; {2} translocon at inner membrane of chloroplasts 21 ; {2} translocon at inner membrane of chloroplasts 21 ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC21A . * Called family CzOrth_5.2-3_02523: AraTha AT3G51820.1, Chlore estExt_Genewise1Plus.C_60119, ChlRei Cre06.g294750.t1.2.v5.5, ChrZof Cz08g28070.t1@, CocSub 27450.2.0.227, MonNeg MNEG_2517; information: {1} CHLG ; {1} chlorophyll synthase ; {1} Chlorophyll synthetase ; {1} G4 ; {1} UbiA prenyltransferase family protein ; {2} AT3G51820.1 ; {2} AT3G51820.1 ; {2} ATG4,CHLG,G4 ; {2} ATG4,CHLG,G4 ; {2} Chlorophyll synthetase ; {2} Cre06.g294750.t1.1 ; {2} Cre06.g294750.t1.1 ; {2} Cre06.g294750.t1.2 ; {2} UbiA prenyltransferase family protein ; {2} UbiA prenyltransferase family protein ; {3} CHLG ; {3} Chlorophyll Synthase . * Called family CzOrth_5.2-3_02532: AraTha AT5G54290.2, Chlore e_gw1.5.323.1, ChlRei Cre07.g357800.t1.2.v5.5, ChrZof Cz08g31010.t1@, CocSub 13575.2.0.227, MonNeg MNEG_5299; information: {1} CCA1 ; {1} CcdA ; {1} Cytochrome C assembly/biogenesis protein ; {1} cytochrome c biogenesis protein family ; {1} cytochrome c-type biogeneis protein ; {2} AT5G54290.1 ; {2} AT5G54290.2 ; {2} CcdA ; {2} CcdA ; {2} Cre07.g357800.t1.1 ; {2} Cre07.g357800.t1.1 ; {2} Cre07.g357800.t1.2 ; {2} Cytochrome C assembly/biogenesis protein ; {2} cytochrome c biogenesis protein family ; {2} cytochrome c biogenesis protein family ; {3} CCDA1 ; {3} Cyt c-Type Biogenesis Factor . * Called family CzOrth_5.2-3_02547: AraTha AT1G69740.1 AT1G44318.1&, Chlore IGS.gm_18_00231, ChlRei Cre02.g091050.t1.2.v5.5, ChrZof Cz09g03180.t1@, CocSub 48948.2.0.227, MonNeg MNEG_9239; information: {1} ALAD1 ; {1} Aldolase superfamily protein ; {1} Aldolase superfamily protein ; {1} Delta-aminolevulinic acid dehydratase ; {1} HEMB1 ; {1} hemb2 ; {1} porphobilinogen synthase ; {2} Aldolase superfamily protein ; {2} Aldolase superfamily protein ; {2} AT1G69740.1 ; {2} AT1G69740.2 ; {2} Cre02.g091050.t1.1 ; {2} Cre02.g091050.t1.1 ; {2} Cre02.g091050.t1.2 ; {2} Delta-aminolevulinic acid dehydratase ; {2} HEMB1 ; {2} HEMB1 ; {3} ALAD ; {3} Delta-Aminolevulinic Acid Dehydratase . * Called family CzOrth_5.2-3_02559: AraTha AT3G53130.1, Chlore fgenesh3_pg.C_scaffold_6000061, ChlRei Cre08.g373100.t1.1.v5.5, ChrZof Cz09g07100.t1@, CocSub 63212.2.0.227, MonNeg MNEG_1212; information: {1} Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase ; {1} Cytochrome P450 superfamily protein ; {1} hypothetical protein ; {1} LUT1 ; {2} AT3G53130.1 ; {2} AT3G53130.1 ; {2} Cre08.g373100.t1.1 ; {2} CYP97C1,LUT1 ; {2} CYP97C1,LUT1 ; {2} Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase ; {2} Cytochrome P450 superfamily protein ; {2} Cytochrome P450 superfamily protein ; {3} CYP97C ; {3} Cytochrome P450-Type Carotene Hydroxylase ; {3} LUT1 . * Called family CzOrth_5.2-3_02563: AraTha AT2G19450.1, Chlore e_gw1.44.1.1, ChlRei Cre01.g045903.t1.1.v5.5, ChrZof Cz09g08290.t1@ Cz06g04190.t1@& Cz06g05010.t1&, CocSub 54084.2.0.227, MonNeg MNEG_1183; information: {1} diacylglycerol acyltransferase ; {1} membrane bound O-acyl transferase (MBOAT) family protein ; {1} TAG1 ; {2} ABX45,AS11,ATDGAT,DGAT1,RDS1,TAG1 ; {2} ABX45,AS11,ATDGAT,DGAT1,RDS1,TAG1 ; {2} AT2G19450.1 ; {2} AT2G19450.1 ; {2} Cre01.g045903.t1.1 ; {2} membrane bound O-acyl transferase (MBOAT) family protein ; {2} membrane bound O-acyl transferase (MBOAT) family protein ; {3} DGAT1A ; {3} DGAT1D ; {3} Diacylglycerol Acyltransferase Type 1 ; {3} Membrane Bound Diacylglycerol Acyltransferase MBOAT, Type 1 . * Called family CzOrth_5.2-3_02565: AraTha AT1G71500.1, Chlore estExt_fgenesh3_pg.C_140099, ChlRei Cre09.g411200.t1.2.v5.5, ChrZof Cz09g09230.t1@, CocSub 30146.2.0.227, MonNeg MNEG_1191; information: {1} hypothetical protein ; {1} Rieske (2Fe-2S) domain-containing protein ; {1} Rieske [2Fe-2S] domain containing protein ; {1} TEF5 ; {2} AT1G71500.1 ; {2} AT1G71500.1 ; {2} Cre09.g411200.t1.1 ; {2} Cre09.g411200.t1.1 ; {2} Cre09.g411200.t1.2 ; {2} Rieske (2Fe-2S) domain-containing protein ; {2} Rieske (2Fe-2S) domain-containing protein ; {2} Rieske [2Fe-2S] domain containing protein ; {3} Rieske 2Fe-2S ; {3} TEF5 . * Called family CzOrth_5.2-3_02600: AraTha AT3G04790.1 AT1G71100.1& AT2G01290.1&, Chlore estExt_Genewise1Plus.C_40033, ChlRei Cre03.g187450.t1.2.v5.5, ChrZof Cz09g17220.t1@ Cz05g13260.t1@&, CocSub 13339.2.0.227 60699.2.0.227&, MonNeg MNEG_14723; information: {1} ribose-5-phosphate isomerase 2 ; {1} ribose 5-phosphate isomerase A ; {1} Ribose-5-phosphate isomerase ; {1} Ribose 5-phosphate isomerase, type A protein ; {1} Ribose 5-phosphate isomerase, type A protein ; {1} RPI1 ; {1} RPI2 ; {1} RSW10 ; {2} AT3G04790.1 ; {2} AT3G04790.1 ; {2} AT3G04790.1 ; {2} Cre03.g187450.t1.1 ; {2} Cre03.g187450.t1.1 ; {2} Cre03.g187450.t1.1 ; {2} Cre03.g187450.t1.2 ; {2} Cre03.g187450.t1.2 ; {2} Ribose-5-phosphate isomerase ; {2} Ribose-5-phosphate isomerase ; {2} Ribose 5-phosphate isomerase, type A protein ; {2} Ribose 5-phosphate isomerase, type A protein ; {2} Ribose 5-phosphate isomerase, type A protein ; {3} Ribose-5-Phosphate Isomerase ; {3} Ribose-5-Phosphate Isomerase ; {3} RPI1 ; {3} RPI2 . * Called family CzOrth_5.2-3_02602: AraTha AT5G05000.2 AT1G02280.1&, Chlore gw1.9.390.1, ChlRei Cre06.g252200.t1.2.v5.5, ChrZof Cz09g17330.t1@, CocSub 45911.2.0.227, MonNeg MNEG_4487; information: {1} chloroplast outer envelope protein ; {1} TOC33 ; {1} TOC34 ; {1} TOC34 ; {1} translocon at the outer envelope membrane of chloroplasts 33 ; {1} translocon at the outer envelope membrane of chloroplasts 34 ; {1} Translocon at the outer envelope membrane of chloroplasts, 75 kD ; {2} AT5G05000.1 ; {2} AT5G05000.1 ; {2} ATTOC34,OEP34,TOC34 ; {2} ATTOC34,OEP34,TOC34 ; {2} Cre06.g252200.t1.1 ; {2} Cre06.g252200.t1.1 ; {2} Cre06.g252200.t1.2 ; {2} translocon at the outer envelope membrane of chloroplasts 34 ; {2} translocon at the outer envelope membrane of chloroplasts 34 ; {2} Translocon at the outer envelope membrane of chloroplasts, 75 kD ; {3} Chloroplast Outer Membrane Translocase ; {3} TOC34 . * Called family CzOrth_5.2-3_02605: AraTha AT5G57030.1, Chlore e_gw1.3.81.1, ChlRei Cre06.g267600.t1.2.v5.5, ChrZof Cz09g18310.t1@, CocSub 41900.2.0.227, MonNeg MNEG_1848; information: {1} hypothetical protein ; {1} LEC1 ; {1} LUT2 ; {1} Lycopene beta/epsilon cyclase protein ; {1} Lycopene epsilon cyclase ; {2} AT5G57030.1 ; {2} AT5G57030.1 ; {2} Cre06.g267600.t1.1 ; {2} Cre06.g267600.t1.1 ; {2} Cre06.g267600.t1.2 ; {2} LUT2 ; {2} LUT2 ; {2} Lycopene beta/epsilon cyclase protein ; {2} Lycopene beta/epsilon cyclase protein ; {2} Lycopene epsilon cyclase ; {3} LCYE ; {3} Lycopene Epsilon-Cyclase . * Called family CzOrth_5.2-3_02611: AraTha AT4G04640.1 AT1G15700.1&, Chlore IGS.gm_9_00192, ChlRei Cre06.g259900.t1.2.v5.5, ChrZof Cz09g21130.t1@, CocSub 52193.2.0.227, MonNeg MNEG_16299 MNEG_14368&; information: {1} ATPase, F1 complex, gamma subunit protein ; {1} ATPase, F1 complex, gamma subunit protein ; {1} ATPC1 ; {1} ATPC2 ; {1} ATPC ; {1} ATP synthase gamma chain ; {1} Chloroplast ATP synthase gamma chain ; {1} F-type H+-transporting ATPase subunit gamma ; {2} AT4G04640.1 ; {2} AT4G04640.1 ; {2} ATPase, F1 complex, gamma subunit protein ; {2} ATPase, F1 complex, gamma subunit protein ; {2} ATPC1 ; {2} ATPC1 ; {2} Chloroplast ATP synthase gamma chain ; {2} Cre06.g259900.t1.1 ; {2} Cre06.g259900.t1.1 ; {2} Cre06.g259900.t1.2 ; {3} ATPC-1 ; {3} CF1 Gamma Subunit . * Called family CzOrth_5.2-3_02631: AraTha AT3G05020.1 AT1G54580.1& AT1G54630.1& AT4G25050.2& AT5G27200.1&, Chlore estExt_Genewise1.C_30447, ChlRei Cre13.g577100.t1.2.v5.5, ChrZof Cz09g30220.t1@, CocSub 52715.2.0.227, MonNeg MNEG_1919; information: {1} ACP1 ; {1} ACP2 ; {1} ACP2 ; {1} ACP3 ; {1} ACP4 ; {1} ACP5 ; {1} acyl carrier protein 1 ; {1} acyl carrier protein 2 ; {1} acyl carrier protein 3 ; {1} acyl carrier protein 4 ; {1} acyl carrier protein 5 ; {1} Acyl-carrier protein ; {1} hypothetical protein ; {2} ACP,ACP1 ; {2} ACP,ACP1 ; {2} acyl carrier protein 1 ; {2} acyl carrier protein 1 ; {2} Acyl-carrier protein ; {2} AT3G05020.1 ; {2} AT3G05020.1 ; {2} Cre13.g577100.t1.1 ; {2} Cre13.g577100.t1.1 ; {2} Cre13.g577100.t1.2 ; {3} ACP2 ; {3} Acyl-Carrier Protein . * Called family CzOrth_5.2-3_02650: AraTha AT2G01110.1, Chlore IGS.gm_5_00302, ChlRei Cre03.g145887.t1.1.v5.5, ChrZof Cz10g05030.t1@, CocSub 29662.2.0.227, MonNeg MNEG_4456; information: {1} APG2 ; {1} Sec-independent periplasmic protein translocase ; {1} sec-independent protein translocase protein TatC ; {1} TAT3 ; {1} TatC-like sec-independent protein translocon subunit ; {2} APG2,PGA2,TATC,UNE3 ; {2} APG2,PGA2,TATC,UNE3 ; {2} AT2G01110.1 ; {2} AT2G01110.1 ; {2} Cre03.g145887.t1.1 ; {2} Sec-independent periplasmic protein translocase ; {2} Sec-independent periplasmic protein translocase ; {2} TatC-like sec-independent protein translocon subunit ; {3} SRP-Independent Translocase Complex ; {3} TATC . * Called family CzOrth_5.2-3_02656: AraTha AT2G47450.1, Chlore IGS.gm_19_00017, ChlRei Cre04.g231026.t1.1.v5.5, ChrZof Cz10g07010.t1@, CocSub 42286.2.0.227, MonNeg MNEG_5811; information: {1} CAO ; {1} chloroplast signal recognition particle component (CAO) ; {1} Chloroplast SRP43/CAO subunit of signal recognition particle ; {1} Signal recognition particle protein, chloroplastic ; {1} SRP43 ; {2} AT2G47450.1 ; {2} AT2G47450.1 ; {2} CAO,CPSRP43 ; {2} CAO,CPSRP43 ; {2} chloroplast signal recognition particle component (CAO) ; {2} chloroplast signal recognition particle component (CAO) ; {2} Chloroplast SRP43/CAO subunit of signal recognition particle ; {2} Cre04.g231026.t1.1 ; {2} Cre32.g781750.t1.1 ; {2} Cre32.g781750.t1.1 ; {2} Cre32.g781750.t1.2 ; {2} Cre32.g781750.t1.2 ; {3} Chloroplast Signal Recognition Particle 43 kDa Subunit ; {3} CPSRP43 . * Called family CzOrth_5.2-3_02680: AraTha AT2G20495.1, Chlore estExt_Genewise1Plus.C_160048, ChlRei Cre07.g348951.t1.1.v5.5, ChrZof Cz10g13060.t1@, CocSub 57833.2.0.227, MonNeg MNEG_10405; information: {1} hypothetical protein ; {1} unknown protein ; {2} AT2G20495.1 ; {2} AT2G20495.1 ; {2} Cre07.g348951.t1.1 ; {3} serine threonine kinase ; {3} STK19 . * Called family CzOrth_5.2-3_02692: AraTha AT3G04870.1, Chlore IGS.gm_36_00005, ChlRei Cre07.g314150.t1.2.v5.5, ChrZof Cz10g17010.t1@, CocSub 35471.2.0.227, MonNeg MNEG_10716; information: {1} ZDS1 ; {1} ZDS ; {1} zeta-carotene desaturase ; {1} Zeta-carotene desaturase ; {1} zeta-carotene desaturase ; {2} AT3G04870.1 ; {2} AT3G04870.2 ; {2} Cre07.g314150.t1.1 ; {2} Cre07.g314150.t1.1 ; {2} Cre07.g314150.t1.2 ; {2} PDE181,SPC1,ZDS ; {2} PDE181,SPC1,ZDS ; {2} zeta-carotene desaturase ; {2} zeta-carotene desaturase ; {2} Zeta-carotene desaturase ; {3} ZDS ; {3} Zeta-Carotene Desaturase . * Called family CzOrth_5.2-3_02693: AraTha AT1G10830.1, Chlore estExt_fgenesh3_kg.C_330001, ChlRei Cre19.g750247.t1.1.v5.5, ChrZof Cz10g17130.t1@, CocSub 53522.2.0.227, MonNeg MNEG_11647; information: {1} 15-cis-zeta-carotene isomerase ; {1} hypothetical protein ; {1} Z-ISO ; {2} 15-cis-zeta-carotene isomerase ; {2} 15-cis-zeta-carotene isomerase ; {2} AT1G10830.1 ; {2} AT1G10830.1 ; {2} Cre19.g750247.t1.1 ; {2} Cre33.g783050.t1.1 ; {2} Cre33.g783050.t1.1 ; {2} Cre33.g783050.t1.2 ; {2} Cre33.g783050.t1.2 ; {2} Z-ISO,Z-ISO1.1,Z-ISO1.2 ; {2} Z-ISO,Z-ISO1.1,Z-ISO1.2 ; {3} Zeta-Carotene Isomerase ; {3} ZISO . * Called family CzOrth_5.2-3_02702: AraTha AT5G23120.1, Chlore estExt_Genewise1Plus.C_240239, ChlRei Cre06.g273700.t1.2.v5.5, ChrZof Cz10g21040.t1@, CocSub 20696.2.0.227, MonNeg MNEG_8562 MNEG_10322&; information: {1} HCF136 ; {1} photosystem II stability/assembly factor, chloroplast (HCF136) ; {1} Photosystem II stability/assembly factor ; {1} Photosystem II stability/assembly factor ; {2} AT5G23120.1 ; {2} AT5G23120.1 ; {2} Cre06.g273700.t1.1 ; {2} Cre06.g273700.t1.1 ; {2} Cre06.g273700.t1.2 ; {2} HCF136 ; {2} HCF136 ; {2} photosystem II stability/assembly factor, chloroplast (HCF136) ; {2} photosystem II stability/assembly factor, chloroplast (HCF136) ; {3} HCF136 ; {3} PSII Assembly Factor . * Called family CzOrth_5.2-3_02708: AraTha AT5G01920.1, Chlore e_gw1.34.8.1, ChlRei Cre12.g483650.t1.2.v5.5, ChrZof Cz10g22110.t1@, CocSub 28181.2.0.227, MonNeg MNEG_3279; information: {1} hypothetical protein ; {1} Protein kinase superfamily protein ; {1} STN8 ; {2} AT5G01920.1 ; {2} AT5G01920.1 ; {2} Cre12.g483650.t1.1 ; {2} Cre12.g483650.t1.1 ; {2} Cre12.g483650.t1.2 ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {2} STN8 ; {2} STN8 ; {3} Chloroplast Ser-Thr Kinase 8 ; {3} STN8 . * Called family CzOrth_5.2-3_02718: AraTha AT1G32500.1, Chlore estExt_fgenesh3_pg.C_290046, ChlRei Cre12.g513950.t1.2.v5.5, ChrZof Cz10g27040.t1@, CocSub 68041.2.0.227, MonNeg MNEG_7947; information: {1} Fe-S cluster assembly protein SufD ; {1} Iron-sulfur cluster assembly protein ; {1} NAP6 ; {1} non-intrinsic ABC protein 6 ; {1} SUF4 ; {2} AT1G32500.1 ; {2} AT1G32500.1 ; {2} ATNAP6,NAP6 ; {2} ATNAP6,NAP6 ; {2} Cre12.g513950.t1.1 ; {2} Cre12.g513950.t1.1 ; {2} Cre12.g513950.t1.2 ; {2} Iron-sulfur cluster assembly protein ; {2} non-intrinsic ABC protein 6 ; {2} non-intrinsic ABC protein 6 ; {3} ABCI7 ; {3} chloroplastic . * Called family CzOrth_5.2-3_02724: AraTha AT1G44446.1, Chlore fgenesh3_pg.C_scaffold_25000074, ChlRei Cre01.g043350.t1.2.v5.5, ChrZof Cz10g28270.t1@, CocSub 18877.2.0.227, MonNeg MNEG_8007 MNEG_2459&; information: {1} CAO1 ; {1} CH1 ; {1} Chlorophyllide a oxygenase ; {1} chlorophyllide a oxygenase ; {1} hypothetical protein ; {1} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} AT1G44446.1 ; {2} AT1G44446.1 ; {2} ATCAO,CAO,CH1 ; {2} ATCAO,CAO,CH1 ; {2} Chlorophyllide a oxygenase ; {2} Cre01.g043350.t1.1 ; {2} Cre01.g043350.t1.1 ; {2} Cre01.g043350.t1.2 ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {3} CAO ; {3} Chlorophyllide a Oxygenase . * Called family CzOrth_5.2-3_02727: AraTha AT2G40690.1, Chlore IGS.gm_11_00255, ChlRei Cre12.g511150.t1.2.v5.5, ChrZof Cz10g29180.t1@, CocSub 13410.2.0.227, MonNeg MNEG_7886; information: {1} GLY1 ; {1} Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase ; {1} Glycerol-3-phosphate dehydrogenase ; {1} GPD1 ; {1} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} AT2G40690.1 ; {2} AT2G40690.1 ; {2} Cre12.g511150.t1.1 ; {2} Cre12.g511150.t1.1 ; {2} Cre12.g511150.t1.2 ; {2} GLY1,SFD1 ; {2} GLY1,SFD1 ; {2} Glycerol-3-phosphate dehydrogenase/dihydroxyacetone-3-phosphate reductase ; {2} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {2} NAD-dependent glycerol-3-phosphate dehydrogenase family protein ; {3} Glycerol-3-Phosphate Dehydrogenase ; {3} GPD1 . * Called family CzOrth_5.2-3_02736: AraTha AT3G21200.1, Chlore fgenesh3_pg.C_scaffold_12000177, ChlRei Cre03.g156600.t1.2.v5.5, ChrZof Cz11g03230.t1@, CocSub 55253.2.0.227, MonNeg MNEG_3777; information: {1} hypothetical protein ; {1} PGR7 ; {1} proton gradient regulation 7 ; {2} AT3G03890.1 ; {2} AT3G21200.1 ; {2} Cre03.g156600.t1.1 ; {2} Cre03.g156600.t1.1 ; {2} Cre03.g156600.t1.2 ; {2} FMN binding ; {2} PGR7 ; {2} proton gradient regulation 7 ; {3} Glutamyl tRNA Reductase ; {3} GluTR-1 ; {3} GTR1 . * Called family CzOrth_5.2-3_02743: AraTha AT1G06950.1, Chlore IGS.gm_23_00018, ChlRei Cre10.g452450.t1.2.v5.5, ChrZof Cz11g07180.t1@, CocSub 31183.2.0.227, MonNeg MNEG_9237 MNEG_10986& MNEG_16047&; information: {1} 110 kDa translocon of chloroplast envelope inner membrane ; {1} hypothetical protein ; {1} hypothetical protein ; {1} TIC110 ; {1} TIC110 ; {1} translocon at the inner envelope membrane of chloroplasts 110 ; {2} 110 kDa translocon of chloroplast envelope inner membrane ; {2} AT1G06950.1 ; {2} AT1G06950.1 ; {2} ATTIC110,TIC110 ; {2} ATTIC110,TIC110 ; {2} Cre10.g452450.t1.1 ; {2} Cre10.g452450.t1.1 ; {2} Cre10.g452450.t1.2 ; {2} translocon at the inner envelope membrane of chloroplasts 110 ; {2} translocon at the inner envelope membrane of chloroplasts 110 ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC110 . * Called family CzOrth_5.2-3_02777: AraTha AT1G76570.1, Chlore estExt_Genewise1Plus.C_40251, ChlRei Cre02.g110750.t1.2.v5.5, ChrZof Cz11g23240.t1@, CocSub 52854.2.0.227, MonNeg MNEG_9253; information: {1} Chlorophyll A-B binding family protein ; {1} Chlorophyll a/b binding protein ; {1} Chlorophyll a-b binding protein C ; {1} LHCB7 ; {2} AT1G76570.1 ; {2} AT1G76570.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll a/b binding protein ; {2} Cre02.g110750.t1.1 ; {2} Cre02.g110750.t1.1 ; {2} Cre02.g110750.t1.2 ; {3} LHC15 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_02778: AraTha AT3G59400.1, Chlore e_gw1.2.429.1, ChlRei Cre05.g246800.t1.2.v5.5, ChrZof Cz11g24180.t1@, CocSub 61137.2.0.227, MonNeg MNEG_12812; information: {1} enzyme binding; tetrapyrrole binding ; {1} GUN4 ; {1} GUN4 ; {1} Tetrapyrrole-binding protein ; {1} Tetrapyrrole-binding protein ; {2} AT3G59400.1 ; {2} AT3G59400.1 ; {2} Cre05.g246800.t1.1 ; {2} Cre05.g246800.t1.1 ; {2} Cre05.g246800.t1.2 ; {2} enzyme binding;tetrapyrrole binding ; {2} enzyme binding;tetrapyrrole binding ; {2} GUN4 ; {2} GUN4 ; {2} Tetrapyrrole-binding protein ; {3} GUN4 ; {3} Tetrapyrrole Binding Protein . * Called family CzOrth_5.2-3_02786: AraTha AT3G15520.1, Chlore IGS.gm_3_00576, ChlRei Cre06.g303300.t1.2.v5.5, ChrZof Cz11g28010.t1@, CocSub 23266.2.0.227, MonNeg MNEG_13078; information: {1} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {1} CYN37 ; {1} Peptidyl-prolyl cis-trans isomerase CYP37 ; {1} Putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {2} AT3G15520.1 ; {2} AT3G15520.1 ; {2} Cre06.g303300.t1.1 ; {2} Cre06.g303300.t1.1 ; {2} Cre06.g303300.t1.2 ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {3} CYP37 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_02796: AraTha AT1G57770.1, Chlore estExt_Genewise1Plus.C_110105, ChlRei Cre16.g674950.t1.2.v5.5, ChrZof Cz12g03260.t1@, CocSub 30895.2.0.227, MonNeg MNEG_8178; information: {1} Carotenoid isomerase 1 ; {1} FAD/NAD(P)-binding oxidoreductase family protein ; {2} AT1G57770.1 ; {2} AT1G57770.1 ; {2} Cre16.g674950.t1.1 ; {2} Cre16.g674950.t1.1 ; {2} Cre16.g674950.t1.2 ; {2} FAD/NAD(P)-binding oxidoreductase family protein ; {2} FAD/NAD(P)-binding oxidoreductase family protein ; {3} Carotene Isomerase ; {3} CRTISO1 . * Called family CzOrth_5.2-3_02802: AraTha AT2G15620.1, Chlore e_gw1.21.24.1, ChlRei Cre09.g410750.t1.2.v5.5, ChrZof Cz12g08110.t1@, CocSub 29833.2.0.227, MonNeg MNEG_12515; information: {1} ferredoxin-nitrite reductase ; {1} NII1 ; {1} NIR1 ; {1} nitrite reductase 1 ; {1} Nitrite reductase ; {2} AT2G15620.1 ; {2} AT2G15620.1 ; {2} ATHNIR,NIR,NIR1 ; {2} ATHNIR,NIR,NIR1 ; {2} Cre09.g410750.t1.1 ; {2} Cre09.g410750.t1.1 ; {2} Cre09.g410750.t1.2 ; {2} nitrite reductase 1 ; {2} nitrite reductase 1 ; {2} Nitrite reductase ; {3} ferredoxin-nitrate reductase ; {3} NIR1 . * Called family CzOrth_5.2-3_02810: AraTha AT3G10230.1, Chlore estExt_Genewise1.C_50404, ChlRei Cre08.g358538.t1.1.v5.5, ChrZof Cz12g10170.t1@, CocSub 36181.2.0.227, MonNeg MNEG_8175; information: {1} LYC ; {1} lycopene beta cyclase ; {1} lycopene cyclase ; {1} Putative chloroplast lycopene beta cyclase ; {2} AT3G10230.1 ; {2} AT3G10230.1 ; {2} Cre08.g358538.t1.1 ; {2} Cre41.g786900.t1.1 ; {2} Cre41.g786900.t1.1 ; {2} Cre41.g786900.t1.2 ; {2} Cre41.g786900.t1.2 ; {2} LYC ; {2} LYC ; {2} lycopene cyclase ; {2} lycopene cyclase ; {2} Putative chloroplast lycopene beta cyclase ; {3} LCYB ; {3} Lycopene Beta-Cyclase . * Called family CzOrth_5.2-3_02838: AraTha AT2G07698.1, Chlore estExt_Genewise1Plus.C_80217, ChlRei Cre10.g419050.t1.1.v5.5, ChrZof Cz12g25090.t1@, CocSub 47874.2.0.227, MonNeg MNEG_11496; information: {1} ATP1B ; {1} ATPase, F1 complex, alpha subunit protein ; {1} F1F0 ATP synthase, alpha subunit ; {1} Mitochondrial F1F0 ATP synthase, alpha subunit ; {2} ATCG00120.1 ; {2} ATCG00120.1 ; {2} ATP synthase subunit alpha ; {2} ATP synthase subunit alpha ; {2} Cre10.g419050.t1.1 ; {2} Mitochondrial F1F0 ATP synthase, alpha subunit ; {3} ATPD ; {3} CF1 Delta Subunit . * Called family CzOrth_5.2-3_02850: AraTha AT1G73920.1 AT1G18460.1&, Chlore fgenesh3_pg.C_scaffold_14000041 e_gw1.14.422.1&, ChlRei Cre12.g541352.t1.1.v5.5, ChrZof Cz13g03050.t1@, CocSub 39557.2.0.227, MonNeg MNEG_13731 MNEG_13475&; information: {1} alpha/beta-Hydrolases superfamily protein ; {1} alpha/beta-Hydrolases superfamily protein ; {1} hypothetical protein ; {1} hypothetical protein ; {1} LIP1 ; {1} Triacylglycerol lipase ; {2} alpha/beta-Hydrolases superfamily protein ; {2} alpha/beta-Hydrolases superfamily protein ; {2} AT1G73920.1 ; {2} AT1G73920.1 ; {2} Cre12.g541352.t1.1 ; {2} Cre27.g774250.t1.1 ; {2} Cre27.g774250.t1.1 ; {2} Triacylglycerol lipase ; {3} LIP1 ; {3} Triacylglycerol Lipase . * Called family CzOrth_5.2-3_02856: AraTha AT2G30200.1, Chlore IGS.gm_3_00173, ChlRei Cre14.g621650.t1.1.v5.5, ChrZof Cz13g05150.t1@, CocSub 27235.2.0.227, MonNeg MNEG_12728 MNEG_13850&; information: {1} catalytics; transferases; [acyl-carrier-protein] S-malonyltransferases; binding ; {1} hypothetical protein ; {1} Malonyl-CoA-acyl carrier protein transacylase ; {2} AT2G30200.1 ; {2} AT2G30200.1 ; {2} catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding ; {2} catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding ; {2} Cre14.g621650.t1.1 ; {3} Malonyl-CoA:ACP Acyltransferase ; {3} MCT1 . * Called family CzOrth_5.2-3_02860: AraTha AT4G28660.2, Chlore e_gw1.3.554.1, ChlRei Cre10.g440450.t1.2.v5.5, ChrZof Cz13g07140.t1@, CocSub 21732.2.0.227, MonNeg MNEG_7475; information: {1} photosystem II reaction center PSB28 protein ; {1} Photosystem II reaction center PSB28 protein ; {1} Photosystem II subunit 28 ; {1} PSB28 ; {1} PSB28 ; {2} AT4G28660.1 ; {2} AT4G28660.2 ; {2} Cre10.g440450.t1.1 ; {2} Cre10.g440450.t1.1 ; {2} Cre10.g440450.t1.2 ; {2} photosystem II reaction center PSB28 protein ; {2} photosystem II reaction center PSB28 protein ; {2} Photosystem II subunit 28 ; {2} PSB28 ; {2} PSB28 ; {3} Photosystem II Subunit 28 ; {3} PSB28 . * Called family CzOrth_5.2-3_02863: AraTha AT5G60600.1, Chlore IGS.gm_8_00004, ChlRei Cre12.g490350.t1.1.v5.5, ChrZof Cz13g08020.t1@, CocSub 27377.2.0.227, MonNeg MNEG_3143; information: {1} 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase ; {1} 4-hydroxy-3-methylbut-2-enyl diphosphate synthase ; {1} HDS1 ; {1} HDS ; {1} hypothetical protein ; {2} 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase ; {2} 4-hydroxy-3-methylbut-2-enyl diphosphate synthase ; {2} 4-hydroxy-3-methylbut-2-enyl diphosphate synthase ; {2} AT5G60600.1 ; {2} AT5G60600.1 ; {2} CLB4,CSB3,GCPE,HDS,ISPG ; {2} CLB4,CSB3,GCPE,HDS,ISPG ; {2} Cre12.g490350.t1.1 ; {3} GCPE ; {3} isoprenoid biosynthesis, MEP pathways, chloroplastic . * Called family CzOrth_5.2-3_02875: AraTha AT4G03280.1, Chlore estExt_fgenesh3_pg.C_70152, ChlRei Cre11.g467689.t1.1.v5.5, ChrZof Cz13g12160.t1@, CocSub 46361.2.0.227, MonNeg MNEG_2391; information: {1} cytochrome b6-f complex iron-sulfur subunit ; {1} PETC ; {1} PETC ; {1} photosynthetic electron transfer C ; {1} Rieske iron-sulfur subunit of the cytochrome b6f complex, chloroplast precursor ; {2} AT4G03280.1 ; {2} AT4G03280.1 ; {2} Cre11.g467689.t1.1 ; {2} Cre18.g744400.t1.1 ; {2} Cre18.g744400.t1.1 ; {2} Cre18.g744400.t1.2 ; {2} Cre18.g744400.t1.2 ; {2} PETC,PGR1 ; {2} PETC,PGR1 ; {2} photosynthetic electron transfer C ; {2} photosynthetic electron transfer C ; {2} Rieske iron-sulfur subunit of the cytochrome b6f complex, chloroplast precursor ; {3} 2Fe-2S Rieske Protein ; {3} PETC . * Called family CzOrth_5.2-3_02906: AraTha AT5G40850.1, Chlore IGS.gm_33_00048, ChlRei Cre09.g396401.t1.1.v5.5, ChrZof Cz14g07090.t1@, CocSub 27543.2.0.227, MonNeg MNEG_10498; information: {1} hypothetical protein ; {1} S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase ; {1} UPM1 ; {1} UPM1 ; {1} urophorphyrin methylase 1 ; {2} AT5G40850.1 ; {2} AT5G40850.1 ; {2} Cre02.g133050.t1.1 ; {2} Cre02.g133050.t1.1 ; {2} Cre09.g396401.t1.1 ; {2} S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase ; {2} UPM1 ; {2} UPM1 ; {2} urophorphyrin methylase 1 ; {2} urophorphyrin methylase 1 ; {3} SUMT2 ; {3} Uroporphyrin III C-Methyltransferase . * Called family CzOrth_5.2-3_02946: AraTha AT1G76450.1, Chlore IGS.gm_27_00055, ChlRei Cre10.g446350.t1.1.v5.5, ChrZof Cz14g21260.t1@, CocSub 58632.2.0.227, MonNeg MNEG_13135; information: {1} CGLD14 ; {1} hypothetical protein ; {1} Photosystem II reaction center PsbP family protein ; {1} Predicted protein ; {2} AT1G76450.1 ; {2} AT1G76450.1 ; {2} Cre10.g446350.t1.1 ; {2} Photosystem II reaction center PsbP family protein ; {2} Photosystem II reaction center PsbP family protein ; {2} Predicted protein ; {3} PPD3 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_02958: AraTha AT2G26540.1, Chlore estExt_Genewise1Plus.C_70032 IGS.gm_7_00047& IGS.gm_7_00048&, ChlRei Cre09.g409100.t1.2.v5.5 Cre09.g406900.t1.2.v5.5&, ChrZof Cz14g24240.t1@ Cz02g07070.t1@&, CocSub 37532.2.0.227, MonNeg MNEG_3562; information: {1} HEMD ; {1} UPS1 ; {1} Uroporphyrinogen-III synthase ; {1} uroporphyrinogen-III synthase family protein ; {1} uroporphyrinogen-III synthase ; {2} AT2G26540.1 ; {2} AT2G26540.1 ; {2} ATDUF3,ATUROS,DUF3,HEMD,UROS ; {2} ATDUF3,ATUROS,DUF3,HEMD,UROS ; {2} Cre09.g406900.t1.1 ; {2} Cre09.g409100.t1.1 ; {2} Cre09.g409100.t1.1 ; {2} Cre09.g409100.t1.2 ; {2} Uroporphyrinogen-III synthase ; {2} uroporphyrinogen-III synthase family protein ; {2} uroporphyrinogen-III synthase family protein ; {3} HEM4-1 ; {3} HEM4-2 ; {3} Uroporphyrinogen III Synthase ; {3} Uroporphyrinogen III Synthase ; {3} UROS ; {3} UROS . * Called family CzOrth_5.2-3_02960: AraTha AT5G03860.1, Chlore IGS.gm_1_00311 fgenesh3_pg.C_scaffold_1000003&, ChlRei Cre03.g144807.t1.1.v5.5, ChrZof Cz14g25060.t1@, CocSub 30369.2.0.227, MonNeg MNEG_11457; information: {1} malate synthase ; {1} Malate synthase ; {1} malate synthase ; {1} MAS1 ; {1} MLS ; {2} AT5G03860.1 ; {2} AT5G03860.1 ; {2} Cre01.g057800.t1.1 ; {2} Cre01.g057800.t1.1 ; {2} Cre01.g057800.t1.2 ; {2} Cre01.g057800.t1.2 ; {2} Cre03.g144807.t1.1 ; {2} malate synthase ; {2} malate synthase ; {2} Malate synthase ; {2} MLS ; {2} MLS ; {3} Malate Synthase ; {3} MAS1 . * Called family CzOrth_5.2-3_02967: AraTha AT1G08380.1, Chlore gw1.16.200.1, ChlRei Cre07.g334550.t1.2.v5.5, ChrZof Cz15g01010.t1@, CocSub 24011.2.0.227, MonNeg MNEG_0799; information: {1} hypothetical protein ; {1} photosystem I subunit O ; {1} Photosystem I subunit O ; {1} PSAO ; {1} PSAO ; {2} AT1G08380.1 ; {2} AT1G08380.1 ; {2} Cre07.g334550.t1.1 ; {2} Cre07.g334550.t1.1 ; {2} Cre07.g334550.t1.2 ; {2} photosystem I subunit O ; {2} photosystem I subunit O ; {2} Photosystem I subunit O ; {2} PSAO ; {2} PSAO ; {3} Photosystem I Subunit O ; {3} PSAO . * Called family CzOrth_5.2-3_03001: AraTha AT3G54890.1, Chlore estExt_Genewise1Plus.C_120473, ChlRei Cre06.g283050.t1.2.v5.5, ChrZof Cz15g17110.t1@, CocSub 25286.2.0.227, MonNeg MNEG_5854; information: {1} LHCA1 ; {1} LHCA1 ; {1} Light-harvesting protein of photosystem I ; {1} light-harvesting protein of photosystem I ; {1} photosystem I light-harvesting complex gene 1 ; {2} AT3G54890.1 ; {2} AT3G54890.1 ; {2} Cre06.g283050.t1.1 ; {2} Cre06.g283050.t1.1 ; {2} Cre06.g283050.t1.2 ; {2} LHCA1 ; {2} LHCA1 ; {2} Light-harvesting protein of photosystem I ; {2} photosystem I light harvesting complex gene 1 ; {2} photosystem I light harvesting complex gene 1 ; {3} LHC7 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_03037: AraTha AT1G73060.1, Chlore IGS.gm_1_00053, ChlRei Cre03.g184550.t1.2.v5.5, ChrZof Cz16g08170.t1@, CocSub 14109.2.0.227, MonNeg MNEG_12840 MNEG_12072&; information: {1} CPLD28 ; {1} hypothetical protein ; {1} hypothetical protein ; {1} Low PSII Accumulation 3 ; {1} LPA3 ; {1} Predicted protein ; {2} AT1G73060.1 ; {2} AT1G73060.1 ; {2} Cre03.g184550.t1.1 ; {2} Cre03.g184550.t1.1 ; {2} Cre03.g184550.t1.2 ; {2} Low PSII Accumulation 3 ; {2} Low PSII Accumulation 3 ; {2} LPA3 ; {2} LPA3 ; {2} Predicted protein ; {3} Low PSII Accumulating ; {3} LPA3A . * Called family CzOrth_5.2-3_03038: AraTha AT3G56940.1, Chlore fgenesh3_pm.C_scaffold_8000002 IGS.gm_8_00038&, ChlRei Cre12.g510050.t1.2.v5.5 Cre07.g346050.t2.1.v5.5&, ChrZof Cz16g08310.t1@, CocSub 35563.2.0.227, MonNeg MNEG_2725; information: {1} Copper response defect 1 protein ; {1} Copper target 1 protein ; {1} CRD1 ; {1} CRD1 ; {1} CTH1 ; {1} dicarboxylate diiron protein, putative (Crd1) ; {1} magnesium-protoporphyrin IX monomethylester (oxidative) cyclase ; {2} ACSF,CHL27,CRD1 ; {2} ACSF,CHL27,CRD1 ; {2} ACSF,CHL27,CRD1 ; {2} AT3G56940.1 ; {2} AT3G56940.1 ; {2} AT3G56940.1 ; {2} Copper target 1 protein ; {2} Cre12.g510050.t1.1 ; {2} Cre12.g510050.t1.1 ; {2} Cre12.g510050.t1.2 ; {2} dicarboxylate diiron protein, putative (Crd1) ; {2} dicarboxylate diiron protein, putative (Crd1) ; {2} dicarboxylate diiron protein, putative (Crd1) ; {3} CRD1 ; {3} CTH1/CHL27 ; {3} Mg-Protoporphyrin Monomethyl Ester Cyclase . * Called family CzOrth_5.2-3_03063: AraTha AT2G30390.2 AT5G26030.1&, Chlore e_gw1.13.26.1, ChlRei Cre07.g339750.t1.2.v5.5, ChrZof Cz16g21260.t1@, CocSub 37848.2.0.227, MonNeg MNEG_12156; information: {1} FC1 ; {1} FC2 ; {1} ferrochelatase 1 ; {1} ferrochelatase 2 ; {1} Ferrochelatase ; {1} ferrochelatase ; {1} HEM2 ; {2} AT2G30390.1 ; {2} AT2G30390.1 ; {2} ATFC-II,FC-II,FC2 ; {2} ATFC-II,FC-II,FC2 ; {2} Cre07.g339750.t1.1 ; {2} Cre07.g339750.t1.1 ; {2} Cre07.g339750.t1.2 ; {2} ferrochelatase 2 ; {2} ferrochelatase 2 ; {2} Ferrochelatase ; {3} Ferrochelatase ; {3} HEM15 . * Called family CzOrth_5.2-3_03075: AraTha AT1G59840.1, Chlore gw1.8.246.1, ChlRei Cre08.g382300.t1.2.v5.5, ChrZof Cz17g14140.t1@, CocSub 28103.2.0.227, MonNeg MNEG_8940; information: {1} CCB4 ; {1} CCB4 ; {1} CGLD23 protein, required for cyt b6 assembly ; {1} cofactor assembly, complex C ; {1} hypothetical protein ; {2} AT1G59840.1 ; {2} AT1G59840.1 ; {2} CCB4 ; {2} CCB4 ; {2} CGLD23 protein, required for cyt b6 assembly ; {2} cofactor assembly of complex C ; {2} cofactor assembly of complex C ; {2} Cre08.g382300.t1.1 ; {2} Cre08.g382300.t1.1 ; {2} Cre08.g382300.t1.2 ; {3} CCB4 ; {3} CGLD23 ; {3} Cyt c-Type Biogenesis Factor . * Called family CzOrth_5.2-3_03080: AraTha AT1G62640.1, Chlore e_gw1.10.88.1, ChlRei Cre04.g216950.t1.2.v5.5, ChrZof Cz18g03070.t1@, CocSub 54940.2.0.227, MonNeg MNEG_2299; information: {1} 3-ketoacyl-acyl carrier protein synthase III ; {1} 3-oxoacyl-[acyl-carrier-protein] synthase III ; {1} KAS III ; {2} 3-ketoacyl-acyl carrier protein synthase III ; {2} 3-ketoacyl-acyl carrier protein synthase III ; {2} AT1G62640.1 ; {2} AT1G62640.1 ; {2} Cre04.g216950.t1.1 ; {2} Cre04.g216950.t1.1 ; {2} Cre04.g216950.t1.2 ; {2} KAS III ; {2} KAS III ; {3} Beta-Ketoacyl ACP Synthase ; {3} KAS III . * Called family CzOrth_5.2-3_03091: AraTha AT1G03475.1 AT4G03205.2&, Chlore IGS.gm_5_00167 estExt_Genewise1.C_340027&, ChlRei Cre02.g085450.t1.2.v5.5, ChrZof Cz18g10090.t1@, CocSub 38117.2.0.227, MonNeg MNEG_4248 MNEG_12024& MNEG_14378& MNEG_16732&; information: {1} Coproporphyrinogen III oxidase ; {1} Coproporphyrinogen III oxidase ; {1} Coproporphyrinogen III oxidase ; {1} coproporphyrinogen III oxidase ; {1} coproporphyrinogen III oxidase ; {1} CPX1 ; {1} hemf2 ; {1} LIN2 ; {2} AT1G03475.1 ; {2} AT1G03475.1 ; {2} ATCPO-I,HEMF1,LIN2 ; {2} ATCPO-I,HEMF1,LIN2 ; {2} Coproporphyrinogen III oxidase ; {2} Coproporphyrinogen III oxidase ; {2} Cre02.g085450.t1.1 ; {2} Cre02.g085450.t1.1 ; {2} Cre02.g085450.t1.2 ; {3} Coproporphyrinogen-III Oxidase ; {3} CPOX2 . * Called family CzOrth_5.2-3_03105: AraTha AT2G28605.1, Chlore gw1.8.463.1, ChlRei Cre16.g678851.t1.1.v5.5, ChrZof Cz19g02070.t1@, CocSub 24503.2.0.227, MonNeg MNEG_2643; information: {1} Photosystem II reaction center PsbP family protein ; {1} PsbP-like protein ; {2} AT2G28605.1 ; {2} AT2G28605.1 ; {2} Cre16.g678851.t1.1 ; {2} Photosystem II reaction center PsbP family protein ; {2} Photosystem II reaction center PsbP family protein ; {3} PPD2 ; {3} PsbP Domain Protein . * Called family CzOrth_5.2-3_03116: AraTha AT5G58250.1, Chlore estExt_fgenesh3_pg.C_290071, ChlRei Cre12.g490500.t1.2.v5.5, ChrZof Cz19g06290.t1@, CocSub 60467.2.0.227, MonNeg MNEG_7343 MNEG_7344&; information: {1} CGL78 ; {1} hypothetical protein ; {1} hypothetical protein ; {1} Predicted protein ; {1} unknown protein ; {2} AT5G58250.1 ; {2} AT5G58250.1 ; {2} Cre12.g490500.t1.1 ; {2} Cre12.g490500.t1.1 ; {2} Cre12.g490500.t1.2 ; {2} Predicted protein ; {3} YCF54 ; {3} Ycf 54 Conserved Hypothetical Protein . * Called family CzOrth_5.2-3_03120: AraTha AT5G64050.1, Chlore IGS.gm_12_00255, ChlRei Cre07.g313700.t1.1.v5.5, ChrZof Cz19g08190.t1@, CocSub 12396.2.0.227, MonNeg MNEG_4622; information: {1} ERS ; {1} glutamate tRNA synthetase ; {1} Glutamyl/glutaminyl-tRNA synthetase ; {1} glutamyl-tRNA synthetase ; {2} AT5G64050.1 ; {2} AT5G64050.1 ; {2} ATERS,ERS,OVA3 ; {2} ATERS,ERS,OVA3 ; {2} Cre07.g313700.t1.1 ; {2} glutamate tRNA synthetase ; {2} glutamate tRNA synthetase ; {2} Glutamyl/glutaminyl-tRNA synthetase ; {3} Glu-Gln Non-Discriminatory tRNA Synthetase ; {3} GlxTR ; {3} GTS . * Called family CzOrth_5.2-3_03141: AraTha AT1G74960.2, Chlore estExt_Genewise1.C_100059 estExt_Genewise1.C_260136&, ChlRei Cre07.g335300.t1.2.v5.5, ChrZof UNPLg00257.t1@, CocSub 54967.2.0.227, MonNeg MNEG_12079; information: {1} 3-ketoacyl-ACP-synthase ; {1} 3-oxoacyl-[acyl-carrier-protein (ACP)]synthase III ; {1} FAB1 ; {1} fatty acid biosynthesis 1 ; {1} KAS2 ; {2} 3-ketoacyl-ACP-synthase ; {2} 3-ketoacyl-acyl carrier protein synthase I ; {2} AT1G74960.3 ; {2} AT5G46290.1 ; {2} ATKAS2,FAB1,KAS2 ; {2} Cre07.g335300.t1.1 ; {2} Cre07.g335300.t1.1 ; {2} Cre07.g335300.t1.2 ; {2} fatty acid biosynthesis 1 ; {2} KAS I,KAS1 ; {3} Beta-Ketoacyl ACP Synthase ; {3} KAS II . * Called family CzOrth_5.2-3_03148: AraTha AT5G28750.1, Chlore e_gw1.15.239.1, ChlRei Cre10.g438550.t1.2.v5.5, ChrZof UNPLg00323.t1@, CocSub 33505.2.0.227, MonNeg MNEG_4832; information: {1} Bacterial sec-independent translocation protein mttA/Hcf106 ; {1} hypothetical protein ; {1} TAT1 ; {1} TatA-like sec-independent protein translocator subunit ; {2} AT5G28750.1 ; {2} AT5G28750.1 ; {2} Bacterial sec-independent translocation protein mttA/Hcf106 ; {2} Bacterial sec-independent translocation protein mttA/Hcf106 ; {2} Cre10.g438550.t1.1 ; {2} Cre10.g438550.t1.1 ; {2} Cre10.g438550.t1.2 ; {2} TatA-like sec-independent protein translocator subunit ; {3} SRP-Independent Translocase Complex ; {3} TATA . * Called family CzOrth_5.2-3_03193: Chlore gw1.1.492.1 IGS.gm_9_00218, ChlRei Cre16.g679250.t1.2.v5.5, ChrZof Cz03g10240.t1@, CocSub 20912.2.0.227, MonNeg MNEG_3496 MNEG_1067&; information: {1} Early light-inducible protein ; {1} ELI1 ; {1} hypothetical protein ; {1} hypothetical protein ; {2} AT4G14690.1 ; {2} AT4G14690.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Cre16.g679250.t1.1 ; {2} Cre16.g679250.t1.1 ; {2} Cre16.g679250.t1.2 ; {2} Early light-inducible protein ; {2} ELIP2 ; {2} ELIP2 ; {3} Early Light-Induced Protein Homolog ; {3} ELIP9 . * Called family CzOrth_5.2-3_03204: Chlore estExt_Genewise1.C_240191, ChlRei Cre10.g425900.t1.2.v5.5, ChrZof Cz01g23030.t1@, CocSub 61250.2.0.227, MonNeg MNEG_0563 MNEG_5145; information: {1} Chlorophyll a-b binding protein ; {1} LHCA5 ; {1} Light-harvesting protein of photosystem I ; {2} AT3G47470.1 ; {2} AT3G47470.1 ; {2} CAB4,LHCA4 ; {2} CAB4,LHCA4 ; {2} Cre10.g425900.t1.1 ; {2} Cre10.g425900.t1.1 ; {2} Cre10.g425900.t1.2 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} Light-harvesting protein of photosystem I ; {3} LHC1 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_03217: Chlore e_gw1.14.2.1 IGS.gm_6_00495&, ChlRei Cre11.g477625.t1.1.v5.5, ChrZof Cz06g36090.t1@, CocSub 12706.2.0.227, MonNeg MNEG_9267 MNEG_10163 MNEG_14817&; information: {1} magnesium chelatase subunit H ; {1} magnesium chelatase subunit H ; {2} ABAR,CCH,CCH1,CHLH,GUN5 ; {2} ABAR,CCH,CCH1,CHLH,GUN5 ; {2} AT5G13630.1 ; {2} AT5G13630.1 ; {2} Cre11.g477625.t1.1 ; {2} magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) ; {2} magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) ; {3} CHLH2 ; {3} Mg-Chelatase Subunit H . * Called family CzOrth_5.2-3_03240: AraTha AT1G04220.1 AT1G01120.1 AT5G43760.1 AT1G07720.1& AT2G28630.1& AT2G46720.1& AT3G10280.1& AT5G04530.1& AT5G49070.1&, ChrZof Cz17g10060.t1@ Cz13g06210.t1@&, MonNeg MNEG_0210 MNEG_1319; information: {1} 3-ketoacyl-CoA synthase 11 ; {1} 3-ketoacyl-CoA synthase 12 ; {1} 3-ketoacyl-CoA synthase 13 ; {1} 3-ketoacyl-CoA synthase 14 ; {1} 3-ketoacyl-CoA synthase 19 ; {1} 3-ketoacyl-CoA synthase 1 ; {1} 3-ketoacyl-CoA synthase 20 ; {1} 3-ketoacyl-CoA synthase 21 ; {1} 3-ketoacyl-CoA synthase 2 ; {1} 3-ketoacyl-CoA synthase 3 ; {1} 3-ketoacyl-CoA synthase 4 ; {1} KCS12 ; {1} KCS13 ; {1} KCS14 ; {1} KCS19 ; {1} KCS1 ; {1} KCS20 ; {1} KCS21 ; {1} KCS2 ; {1} KCS3 ; {3} LCKAS12 ; {3} LCKAS9 ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase . * Called family CzOrth_5.2-3_03256: AraTha AT1G03680.1 AT4G03520.1 AT1G52990.1& AT2G15570.2& AT3G15360.1& AT4G12170.1& AT5G04260.1& AT5G06690.2&, Chlore estExt_Genewise1.C_300034, ChrZof Cz13g13140.t1@, CocSub 11832.2.0.227, MonNeg MNEG_5175 MNEG_9112&; information: {1} ATHM2 ; {1} ATHM3 ; {1} hypothetical protein ; {1} hypothetical protein ; {1} thioredoxin family protein ; {1} thioredoxin M-type 1 ; {1} thioredoxin M-type 4 ; {1} Thioredoxin superfamily protein ; {1} Thioredoxin superfamily protein ; {1} THM1 ; {1} TRX-M4 ; {1} WCRKC1 ; {1} WCRKC2 ; {1} WCRKC thioredoxin 1 ; {1} WCRKC thioredoxin 2 ; {2} AT3G15360.1 ; {2} ATHM4,ATM4,TRX-M4 ; {2} Cre01.g052250.t1.1 ; {2} Cre01.g052250.t1.2 ; {2} thioredoxin M-type 4 ; {2} Thioredoxin x ; {3} thioredoxin ; {3} TRX2 . * Called family CzOrth_5.2-3_03299: AraTha AT1G53240.1 AT3G15020.1, Chlore estExt_fgenesh3_kg.C_290007, ChlRei Cre12.g483950.t1.2.v5.5, ChrZof Cz02g21340.t1@&, CocSub 22460.2.0.227, MonNeg MNEG_4763; information: {1} Lactate/malate dehydrogenase family protein ; {1} malate dehydrogenase ; {1} MDH4 ; {1} mMDH1 ; {1} mMDH2 ; {1} NAD-dependent malate dehydrogenase, mitochondrial ; {2} AT1G53240.1 ; {2} AT1G53240.1 ; {2} Cre12.g483950.t1.1 ; {2} Cre12.g483950.t1.1 ; {2} Cre12.g483950.t1.2 ; {2} Lactate/malate dehydrogenase family protein ; {2} Lactate/malate dehydrogenase family protein ; {2} mMDH1 ; {2} mMDH1 ; {2} NAD-dependent malate dehydrogenase, mitochondrial ; {3} Malate Dehydrogenase ; {3} MDH2 . * Called family CzOrth_5.2-3_03343: Chlore IGS.gm_18_00325 estExt_fgenesh3_kg.C_260011, ChrZof Cz07g02100.t1@ Cz07g02110.t1@, CocSub 38026.2.0.227; information: {2} AT2G05100.1 ; {2} Cre12.g548400.t1.1 ; {2} Cre12.g548400.t1.2 ; {2} LHCB2,LHCB2.1 ; {2} Light-harvesting protein of photosystem II ; {2} photosystem II light harvesting complex gene 2.1 ; {3} LHC17 ; {3} LHC18 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_03440: AraTha AT3G46740.1 AT1G35860.1&, Chlore IGS.gm_29_00064, ChlRei Cre03.g175200.t1.2.v5.5, ChrZof Cz01g30030.t1@, CocSub 13722.2.0.227; information: {1} TOC75 ; {1} TOC75-I ; {1} TOC75-III ; {1} translocon at the outer envelope membrane of chloroplasts 75-III ; {1} Translocon at the outer envelope membrane of chloroplasts, 75 kD ; {1} translocon outer membrane complex 75-I ; {2} AT3G46740.1 ; {2} AT3G46740.1 ; {2} Cre03.g175200.t1.1 ; {2} Cre03.g175200.t1.1 ; {2} Cre03.g175200.t1.2 ; {2} MAR1,TOC75-III ; {2} MAR1,TOC75-III ; {2} translocon at the outer envelope membrane of chloroplasts 75-III ; {2} translocon at the outer envelope membrane of chloroplasts 75-III ; {2} Translocon at the outer envelope membrane of chloroplasts, 75 kD ; {3} Chloroplast Outer Membrane Translocase ; {3} TOC75 . * Called family CzOrth_5.2-3_03488: AraTha AT1G05385.1, Chlore IGS.gm_3_00069, ChlRei Cre02.g073850.t1.2.v5.5, ChrZof Cz02g41080.t1@, CocSub 52532.2.0.227; information: {1} CGL54 ; {1} LPA19 ; {1} photosystem II 11 kDa protein-related ; {1} Predicted protein ; {2} AT1G05385.1 ; {2} AT1G05385.1 ; {2} Cre02.g073850.t1.1 ; {2} Cre02.g073850.t1.1 ; {2} Cre02.g073850.t1.2 ; {2} LPA19,Psb27-H1 ; {2} LPA19,Psb27-H1 ; {2} photosystem II 11 kDa protein-related ; {2} photosystem II 11 kDa protein-related ; {2} Predicted protein ; {3} Photosystem II Subunit 27 ; {3} PSB27-H2 . * Called family CzOrth_5.2-3_03500: AraTha AT5G13450.1, Chlore estExt_Genewise1Plus.C_120258, ChlRei Cre16.g680000.t1.2.v5.5, ChrZof Cz03g14200.t1@, CocSub 45852.2.0.227; information: {1} ATP5 ; {1} ATP5 ; {1} delta subunit of Mt ATP synthase ; {1} Mitochondrial ATP synthase subunit 5, OSCP subunit ; {2} AT5G13450.1 ; {2} AT5G13450.1 ; {2} ATP5 ; {2} ATP5 ; {2} Cre16.g680000.t1.1 ; {2} Cre16.g680000.t1.1 ; {2} Cre16.g680000.t1.2 ; {2} delta subunit of Mt ATP synthase ; {2} delta subunit of Mt ATP synthase ; {2} Mitochondrial ATP synthase subunit 5, OSCP subunit ; {3} OSCP ; {3} subunit O, OSCP . * Called family CzOrth_5.2-3_03509: AraTha AT3G44600.1, Chlore e_gw1.30.14.1, ChlRei Cre10.g453900.t1.2.v5.5, ChrZof Cz03g25080.t1@, CocSub 26420.2.0.227, MonNeg MNEG_16666&; information: {1} cyclophilin71 ; {1} CYN71 ; {1} CYP71 ; {1} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {1} peptidylprolyl isomerase domain and WD repeat-containing protein 1 ; {2} AT3G44600.1 ; {2} AT3G44600.1 ; {2} Cre10.g453900.t1.1 ; {2} Cre10.g453900.t1.1 ; {2} Cre10.g453900.t1.2 ; {2} cyclophilin71 ; {2} cyclophilin71 ; {2} CYP71 ; {2} CYP71 ; {2} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {3} CYP71 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_03545: AraTha AT1G79440.1 AT1G54100.1&, Chlore fgenesh3_pm.C_scaffold_2000007, ChlRei Cre08.g381702.t1.1.v5.5 Cre16.g684043.t1.1.v5.5&, ChrZof Cz05g02090.t1@ Cz03g36230.t1&, CocSub 34715.2.0.227 19137.2.0.227&, MonNeg MNEG_15445&; information: {1} aldehyde dehydrogenase 5F1 ; {1} aldehyde dehydrogenase 7B4 ; {1} ALDH5F1 ; {1} ALDH7B4 ; {1} succinate-semialdehyde dehydrogenase (NADP+) ; {2} aldehyde dehydrogenase 2B7 ; {2} aldehyde dehydrogenase 5F1 ; {2} aldehyde dehydrogenase 5F1 ; {2} aldehyde dehydrogenase 5F1 ; {2} ALDH2B,ALDH2B7 ; {2} ALDH5F1,SSADH,SSADH1 ; {2} ALDH5F1,SSADH,SSADH1 ; {2} ALDH5F1,SSADH,SSADH1 ; {2} AT1G23800.1 ; {2} AT1G79440.1 ; {2} AT1G79440.1 ; {2} AT1G79440.1 ; {2} Cre01.g069750.t1.1 ; {2} Cre08.g381702.t1.1 ; {2} Cre12.g556600.t1.1 ; {2} Cre12.g556600.t1.2 ; {2} Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating ; {3} SSADH ; {3} Succinate Semialdehyde Dehydrogenase . * Called family CzOrth_5.2-3_03589: AraTha AT5G15450.1 AT2G25140.1&, Chlore IGS.gm_18_00300, ChlRei Cre02.g090850.t1.1.v5.5 Cre11.g467575.t1.1.v5.5&, ChrZof Cz06g27180.t1@, CocSub 53588.2.0.227; information: {1} casein lytic proteinase B3 ; {1} casein lytic proteinase B4 ; {1} CLPB3 ; {1} CLPB3 ; {1} CLPB4 ; {1} ClpB chaperone, Hsp100 family ; {2} APG6,CLPB-P,CLPB3 ; {2} APG6,CLPB-P,CLPB3 ; {2} APG6,CLPB-P,CLPB3 ; {2} AT5G15450.1 ; {2} AT5G15450.1 ; {2} AT5G15450.1 ; {2} casein lytic proteinase B3 ; {2} casein lytic proteinase B3 ; {2} casein lytic proteinase B3 ; {2} ClpB chaperone, Hsp100 family ; {2} Cre02.g090850.t1.1 ; {3} chloroplastic ; {3} CLPN . * Called family CzOrth_5.2-3_03651: AraTha AT1G26940.1, Chlore gw1.27.65.1, ChlRei Cre06.g292500.t1.2.v5.5, ChrZof Cz09g09160.t1@, CocSub 39489.2.0.227; information: {1} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {1} Cyclophilin-like protein; cyclophilin-like protein ; {1} CYN23 ; {2} AT1G26940.1 ; {2} AT1G26940.1 ; {2} Cre06.g292500.t1.1 ; {2} Cre06.g292500.t3.1 ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {2} Cyclophilin-like protein; cyclophilin-like protein ; {3} CYP23 ; {3} may need to be merged with adjacent gene model . * Called family CzOrth_5.2-3_03657: AraTha AT4G15110.1, Chlore IGS.gm_20_00220, ChlRei Cre01.g027550.t1.1.v5.5, ChrZof Cz09g14130.t1@, CocSub 12656.2.0.227, MonNeg MNEG_12781& MNEG_16103&; information: {1} CYP97B3 ; {1} Cytochrome P450, CYP97 superfamily, CYP97B family ; {1} cytochrome P450, family 97, subfamily B, polypeptide 3 ; {1} hypothetical protein ; {2} AT4G15110.1 ; {2} AT4G15110.1 ; {2} Cre01.g027550.t1.1 ; {2} CYP97B3 ; {2} CYP97B3 ; {2} Cytochrome P450, CYP97 superfamily, CYP97B family ; {2} cytochrome P450, family 97, subfamily B, polypeptide 3 ; {2} cytochrome P450, family 97, subfamily B, polypeptide 3 ; {3} CYP97A-2 ; {3} Cytochrome P450-Type Carotene Hydroxylase ; {3} LUT5 . * Called family CzOrth_5.2-3_03662: AraTha AT5G04900.1, Chlore estExt_Genewise1Plus.C_20458, ChlRei Cre14.g608800.t1.2.v5.5, ChrZof Cz09g17200.t1@, CocSub 17245.2.0.227 40380.2.0.227&; information: {1} NOL ; {1} NYC1-like ; {2} AT4G13250.1 ; {2} AT5G04900.1 ; {2} AT5G04900.1 ; {2} Cre14.g608800.t1.1 ; {2} Cre14.g608800.t1.1 ; {2} Cre14.g608800.t1.1 ; {2} Cre14.g608800.t1.2 ; {2} Cre14.g608800.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NOL ; {2} NOL ; {2} NYC1 ; {2} NYC1-like ; {2} NYC1-like ; {3} Chlorophyllide b Reductase ; {3} NOL . * Called family CzOrth_5.2-3_03698: AraTha AT4G36530.2 AT3G24420.1& AT4G36610.1& AT5G17780.2& AT5G21950.1&, Chlore IGS.gm_10_00310, ChlRei Cre10.g456150.t1.2.v5.5, ChrZof Cz10g19170.t1@, CocSub 16804.2.0.227; information: {1} alpha/beta-Hydrolases superfamily protein ; {1} alpha/beta-Hydrolases superfamily protein ; {2} alpha/beta-Hydrolases superfamily protein ; {2} alpha/beta-Hydrolases superfamily protein ; {2} AT4G36530.2 ; {2} AT4G36530.2 ; {2} Cre10.g456150.t1.1 ; {2} Cre10.g456150.t1.1 ; {2} Cre10.g456150.t1.2 ; {3} Pheophytinase ; {3} PPH1 . * Called family CzOrth_5.2-3_03720: AraTha AT2G05990.1, Chlore estExt_fgenesh3_kg.C_10013, ChlRei Cre06.g294950.t1.1.v5.5, ChrZof Cz11g20040.t1@, CocSub 65820.2.0.227; information: {1} MOD1 ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {2} AT2G05990.1 ; {2} AT2G05990.1 ; {2} Cre06.g294950.t1.1 ; {2} ENR1,MOD1 ; {2} ENR1,MOD1 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Enoyl ACP Reductase ; {3} ENR . * Called family CzOrth_5.2-3_03752: AraTha AT2G45770.2, Chlore IGS.gm_24_00191, ChlRei Cre05.g241450.t1.2.v5.5, ChrZof Cz12g26150.t1@, CocSub 35157.2.0.227, MonNeg MNEG_15616&; information: {1} Chloroplast SRP Receptor ; {1} chloroplast SRP receptor ; {1} CPFTSY ; {1} FTSY ; {1} signal recognition particle receptor protein, chloroplast (FTSY) ; {2} AT2G45770.1 ; {2} AT2G45770.1 ; {2} Chloroplast SRP Receptor ; {2} CPFTSY,FRD4 ; {2} CPFTSY,FRD4 ; {2} Cre05.g241450.t1.1 ; {2} Cre05.g241450.t1.1 ; {2} Cre05.g241450.t1.2 ; {2} signal recognition particle receptor protein, chloroplast (FTSY) ; {2} signal recognition particle receptor protein, chloroplast (FTSY) ; {3} Chloroplast Signal Recognition Particle Receptor ; {3} FTSY . * Called family CzOrth_5.2-3_03810: AraTha AT5G08290.1 AT3G24730.1&, Chlore IGS.gm_35_00071, ChlRei Cre01.g055416.t1.1.v5.5, ChrZof Cz16g08130.t1@, CocSub 31029.2.0.227; information: {1} mRNA splicing factor, thioredoxin-like U5 snRNP ; {1} mRNA splicing factor, thioredoxin-like U5 snRNP ; {1} YLS8 ; {2} AT5G08290.1 ; {2} AT5G08290.1 ; {2} Cre01.g055416.t1.1 ; {2} Cre23.g768400.t1.1 ; {2} Cre23.g768400.t1.1 ; {2} mRNA splicing factor, thioredoxin-like U5 snRNP ; {2} mRNA splicing factor, thioredoxin-like U5 snRNP ; {2} YLS8 ; {2} YLS8 ; {3} spliceosome regulator ; {3} YLS8 . * Called family CzOrth_5.2-3_03812: AraTha AT2G40490.1, Chlore estExt_Genewise1.C_190069, ChlRei Cre11.g467700.t1.1.v5.5, ChrZof Cz16g13070.t1@, CocSub 36798.2.0.227, MonNeg MNEG_15657&; information: {1} HEME2 ; {1} UPD1 ; {1} Uroporphyrinogen decarboxylase ; {1} uroporphyrinogen decarboxylase ; {1} Uroporphyrinogen-III decarboxylase ; {2} AT2G40490.1 ; {2} AT2G40490.1 ; {2} Cre11.g467700.t1.1 ; {2} HEME2 ; {2} HEME2 ; {2} Uroporphyrinogen decarboxylase ; {2} Uroporphyrinogen decarboxylase ; {2} Uroporphyrinogen-III decarboxylase ; {3} UROD4 ; {3} Uroporphyrinogen III Decarboxylase . * Called family CzOrth_5.2-3_03877: AraTha AT5G52110.1, ChlRei Cre12.g537850.t1.2.v5.5, ChrZof Cz02g07090.t1@, CocSub 61709.2.0.227, MonNeg MNEG_7779; information: {1} CCB2 ; {1} HCF208 ; {1} Protein of unknown function (DUF2930) ; {1} Protein required for cyt b6 assembly ; {1} protein required for cyt b6 assembly ; {2} AT5G52110.1 ; {2} AT5G52110.1 ; {2} CCB2,HCF208 ; {2} CCB2,HCF208 ; {2} Cre12.g537850.t1.1 ; {2} Cre12.g537850.t1.1 ; {2} Cre12.g537850.t1.2 ; {2} Protein of unknown function (DUF2930) ; {2} Protein of unknown function (DUF2930) ; {2} Protein required for cyt b6 assembly ; {3} CCB2 ; {3} Cyt c-Type Biogenesis Factor . * Called family CzOrth_5.2-3_03881: AraTha AT5G13800.2, ChlRei Cre12.g514700.t1.2.v5.5, ChrZof Cz02g13050.t1@, CocSub 19825.2.0.227, MonNeg MNEG_12284 MNEG_13482&; information: {1} hypothetical protein ; {1} hypothetical protein ; {1} pheophytinase ; {1} PPH ; {2} AT5G13800.1 ; {2} AT5G13800.2 ; {2} Cre12.g514700.t1.1 ; {2} Cre12.g514700.t1.1 ; {2} Cre12.g514700.t1.2 ; {2} CRN1,PPH ; {2} CRN1,PPH ; {2} pheophytinase ; {2} pheophytinase ; {3} Pheophytinase ; {3} PPH2 . * Called family CzOrth_5.2-3_03882: AraTha AT3G47470.1, Chlore fgenesh3_pg.C_scaffold_3000291&, ChlRei Cre10.g452050.t1.2.v5.5, ChrZof Cz02g14140.t1@, CocSub 52367.2.0.227, MonNeg MNEG_4331 MNEG_14070&; information: {1} chlorophyll A/B binding protein, putative ; {1} chlorophyll A/B binding protein, putative ; {1} LHCA4 ; {1} LHCA4 ; {1} light-harvesting chlorophyll-protein complex I subunit A4 ; {1} Light-harvesting protein of photosystem I ; {2} AT3G47470.1 ; {2} AT3G47470.1 ; {2} CAB4,LHCA4 ; {2} CAB4,LHCA4 ; {2} Cre10.g452050.t1.1 ; {2} Cre10.g452050.t1.1 ; {2} Cre10.g452050.t1.2 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} Light-harvesting protein of photosystem I ; {3} LHC8 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_03894: AraTha AT2G21970.1, ChlRei Cre08.g376300.t1.2.v5.5, ChrZof Cz03g00160.t1@, CocSub 67746.2.0.227, MonNeg MNEG_8665; information: {1} hypothetical protein ; {1} SEP2 ; {1} stress enhanced protein 2 ; {2} Cre08.g376300.t1.1 ; {2} Cre08.g376300.t1.1 ; {2} Cre08.g376300.t1.2 ; {3} LHC12 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_03904: AraTha AT1G49970.1, Chlore IGS.gm_36_00055&, ChlRei Cre14.g619100.t1.2.v5.5, ChrZof Cz03g18040.t1@, CocSub 10544.2.0.227, MonNeg MNEG_9710; information: {1} ATP-dependent Clp protease proteolytic subunit ; {1} CLP protease proteolytic subunit 1 ; {1} CLPR1 ; {1} CLPR1 ; {1} Inactive subunit of chloroplast ClpP complex ; {2} AT1G49970.1 ; {2} AT1G49970.1 ; {2} CLP protease proteolytic subunit 1 ; {2} CLP protease proteolytic subunit 1 ; {2} CLPR1,NCLPP5,SVR2 ; {2} CLPR1,NCLPP5,SVR2 ; {2} Cre14.g619100.t1.1 ; {2} Cre14.g619100.t1.1 ; {2} Cre14.g619100.t1.2 ; {2} Inactive subunit of chloroplast ClpP complex ; {3} CLP1 ; {3} clp protease . * Called family CzOrth_5.2-3_03933: AraTha AT2G31530.1, ChlRei Cre03.g158250.t1.2.v5.5, ChrZof Cz05g25080.t1@, CocSub 45870.2.0.227, MonNeg MNEG_11092; information: {1} Preprotein translocase secY subunit ; {1} Preprotein translocase subunit secY ; {1} SCY2 ; {1} SCY2 ; {1} SecY protein transport family protein ; {2} AT2G31530.1 ; {2} AT2G31530.1 ; {2} Cre03.g158250.t1.1 ; {2} Cre03.g158250.t1.1 ; {2} Cre03.g158250.t1.2 ; {2} EMB2289,SCY2 ; {2} EMB2289,SCY2 ; {2} Preprotein translocase secY subunit ; {2} SecY protein transport family protein ; {2} SecY protein transport family protein ; {3} Preprotein Translocase SecY ; {3} SECY2 . * Called family CzOrth_5.2-3_03937: AraTha AT5G47030.1, ChlRei Cre11.g467707.t1.1.v5.5, ChrZof Cz05g29070.t1 Cz05g29060.t1@&, CocSub 48924.2.0.227, MonNeg MNEG_6560; information: {1} ATP4 ; {1} ATPase, F1 complex, delta/epsilon subunit ; {1} F-type H+-transporting ATPase subunit delta ; {1} Mitochondrial F1F0 ATP synthase, delta subunit ; {2} AT5G47030.1 ; {2} AT5G47030.1 ; {2} ATPase, F1 complex, delta/epsilon subunit ; {2} ATPase, F1 complex, delta/epsilon subunit ; {2} Cre11.g467707.t1.1 ; {2} Cre18.g743700.t1.1 ; {2} Cre18.g743700.t1.1 ; {2} Cre18.g743700.t1.2 ; {2} Cre18.g743700.t1.2 ; {2} Mitochondrial F1F0 ATP synthase, delta subunit ; {3} ATPD ; {3} delta . * Called family CzOrth_5.2-3_03943: AraTha AT5G38520.2 AT4G24140.1&, ChlRei Cre16.g664350.t1.2.v5.5, ChrZof Cz06g04170.t1@, CocSub 38683.2.0.227, MonNeg MNEG_5245; information: {1} alpha/beta-Hydrolases superfamily protein ; {1} alpha/beta-Hydrolases superfamily protein ; {1} hypothetical protein ; {2} alpha/beta-Hydrolases superfamily protein ; {2} alpha/beta-Hydrolases superfamily protein ; {2} AT5G38520.1 ; {2} AT5G38520.1 ; {2} Cre16.g664350.t1.1 ; {2} Cre16.g664350.t1.1 ; {2} Cre16.g664350.t1.2 ; {3} Pheophytinase ; {3} PPH3 . * Called family CzOrth_5.2-3_03945: AraTha AT5G46110.4, Chlore IGS.gm_23_00118&, ChlRei Cre01.g045550.t1.2.v5.5, ChrZof Cz06g08130.t1@, CocSub 56674.2.0.227, MonNeg MNEG_1930 MNEG_5041&; information: {1} APE2 ; {1} Glucose-6-phosphate/phosphate translocator-related ; {1} hypothetical protein ; {1} Triose phosphate/phosphate translocator ; {1} Triose phosphate transporter ; {2} APE2,TPT ; {2} APE2,TPT ; {2} AT5G46110.4 ; {2} AT5G46110.4 ; {2} Cre01.g045550.t1.1 ; {2} Cre01.g045550.t1.1 ; {2} Cre01.g045550.t1.2 ; {2} Glucose-6-phosphate/phosphate translocator-related ; {2} Glucose-6-phosphate/phosphate translocator-related ; {2} Triose phosphate transporter ; {3} TPT ; {3} triose phospate translocator . * Called family CzOrth_5.2-3_03985: AraTha AT4G31780.2 AT2G11810.1& AT5G20410.1&, ChlRei Cre13.g585301.t1.1.v5.5, ChrZof Cz08g30040.t1@, CocSub 35261.2.0.227, MonNeg MNEG_3776; information: {1} 1,2-diacylglycerol 3-beta-galactosyltransferase ; {1} MGD1 ; {1} MGD2 ; {1} MGDC ; {1} monogalactosyldiacylglycerol synthase 1 ; {1} monogalactosyldiacylglycerol synthase 2 ; {1} monogalactosyldiacylglycerol synthase type C ; {2} AT4G31780.2 ; {2} AT4G31780.2 ; {2} Cre13.g585301.t1.1 ; {2} MGD1,MGDA ; {2} MGD1,MGDA ; {2} monogalactosyl diacylglycerol synthase 1 ; {2} monogalactosyl diacylglycerol synthase 1 ; {3} MGD ; {3} Monogalactosyldiacylglycerol Synthase . * Called family CzOrth_5.2-3_03999: AraTha AT5G60620.1, ChlRei Cre06.g273250.t1.2.v5.5, ChrZof Cz09g31330.t1@, CocSub 4945.2.0.227, MonNeg MNEG_12877; information: {1} glycerol-3-phosphate acyltransferase 9 ; {1} glycerol-3-phosphate O-acyltransferase3/4 ; {1} GPAT9 ; {2} AT5G60620.1 ; {2} AT5G60620.1 ; {2} Cre06.g273250.t1.1 ; {2} Cre06.g273250.t1.1 ; {2} Cre06.g273250.t1.2 ; {2} glycerol-3-phosphate acyltransferase 9 ; {2} glycerol-3-phosphate acyltransferase 9 ; {2} GPAT9 ; {2} GPAT9 ; {3} Glycerol-3-Phosphate O-Acyltransferase ; {3} GPAT2 . * Called family CzOrth_5.2-3_04012: AraTha AT1G32200.1, ChlRei Cre02.g143000.t1.2.v5.5, ChrZof Cz11g03260.t1@, CocSub 31435.2.0.227, MonNeg MNEG_10600; information: {1} ATS1 ; {1} Glycerol-3-phosphate acyltransferase ; {1} hypothetical protein ; {1} phospholipid/glycerol acyltransferase family protein ; {2} ACT1,ATS1 ; {2} ACT1,ATS1 ; {2} AT1G32200.1 ; {2} AT1G32200.2 ; {2} Cre02.g143000.t1.1 ; {2} Cre02.g143000.t1.1 ; {2} Cre02.g143000.t1.2 ; {2} Glycerol-3-phosphate acyltransferase ; {2} phospholipid/glycerol acyltransferase family protein ; {2} phospholipid/glycerol acyltransferase family protein ; {3} Glycerol-3-Phosphate O-Acyltransferase ; {3} GPAT1 . * Called family CzOrth_5.2-3_04015: AraTha AT2G26830.1, ChlRei Cre06.g291600.t1.1.v5.5, ChrZof Cz11g15030.t1@, CocSub 30505.2.0.227, MonNeg MNEG_1606; information: {1} Choline/ethanolamine kinase ; {1} emb1187 ; {1} Ethanolamine kinase ; {1} ETK1 ; {1} Protein kinase superfamily protein ; {2} AT2G26830.1 ; {2} AT2G26830.1 ; {2} Cre06.g291600.t2.1 ; {2} emb1187 ; {2} emb1187 ; {2} Ethanolamine kinase ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {3} Ethanolamine Kinase ; {3} ETK . * Called family CzOrth_5.2-3_04035: AraTha AT5G22620.1, ChlRei Cre05.g232550.t1.2.v5.5, ChrZof Cz14g08090.t1@, CocSub 14103.2.0.227, MonNeg MNEG_15137; information: {1} hypothetical protein ; {1} PGM4 ; {1} phosphoglycerate/bisphosphoglycerate mutase family protein ; {1} Phosphoglycerate mutase ; {2} AT5G22620.1 ; {2} AT5G22620.3 ; {2} Cre05.g232550.t1.1 ; {2} Cre05.g232550.t1.1 ; {2} Cre05.g232550.t1.2 ; {2} phosphoglycerate/bisphosphoglycerate mutase family protein ; {2} phosphoglycerate/bisphosphoglycerate mutase family protein ; {2} Phosphoglycerate mutase ; {3} PGM4 ; {3} Phosphoglycerate Mutase . * Called family CzOrth_5.2-3_04038: AraTha AT5G13630.1, ChlRei Cre07.g325500.t1.1.v5.5, ChrZof Cz14g15070.t1@, CocSub 62355.2.0.227, MonNeg MNEG_7537 MNEG_16045&; information: {1} GUN5 ; {1} magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) ; {1} Magnesium chelatase subunit H ; {1} magnesium chelatase subunit H ; {1} magnesium chelatase subunit H ; {2} ABAR,CCH,CCH1,CHLH,GUN5 ; {2} ABAR,CCH,CCH1,CHLH,GUN5 ; {2} AT5G13630.1 ; {2} AT5G13630.1 ; {2} Cre07.g325500.t1.1 ; {2} magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) ; {2} magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) ; {2} Magnesium chelatase subunit H ; {3} CHLH1 ; {3} Mg-Chelatase Subunit H . * Called family CzOrth_5.2-3_04040: AraTha AT2G43180.1, ChlRei Cre03.g149250.t1.2.v5.5, ChrZof Cz14g19100.t1@, CocSub 15769.2.0.227, MonNeg MNEG_11478; information: {1} Petal death protein ; {1} Phosphoenolpyruvate carboxylase family protein ; {2} AT2G43180.1 ; {2} AT2G43180.2 ; {2} Cre03.g149250.t1.1 ; {2} Cre03.g149250.t1.1 ; {2} Cre03.g149250.t1.2 ; {2} Phosphoenolpyruvate carboxylase family protein ; {2} Phosphoenolpyruvate carboxylase family protein ; {3} PEPC3 ; {3} PEP Carboxylase . * Called family CzOrth_5.2-3_04080: AraTha AT1G02910.1, Chlore estExt_fgenesh3_pg.C_220098, ChlRei Cre10.g430150.t1.2.v5.5, ChrZof Cz01g20260.t1@, MonNeg MNEG_10037; information: {1} hypothetical protein ; {1} LPA1 ; {1} tetratricopeptide repeat (TPR)-containing protein ; {2} AT1G02910.1 ; {2} Cre10.g430150.t1.1 ; {2} LPA1 ; {2} tetratricopeptide repeat (TPR)-containing protein ; {3} Low PSII Accumulating ; {3} LPA1B . * Called family CzOrth_5.2-3_04085: AraTha AT1G11390.1 AT1G61640.1&, Chlore fgenesh3_pg.C_scaffold_22000008, ChlRei Cre10.g430800.t1.1.v5.5, ChrZof Cz01g29170.t1@, MonNeg MNEG_4656; information: {1} ABC1 family protein ; {1} Protein kinase superfamily protein ; {1} Protein kinase superfamily protein ; {2} AT1G61640.1 ; {2} Protein kinase superfamily protein ; {3} ABKC ; {3} serine threonine kinase . * Called family CzOrth_5.2-3_04113: AraTha AT5G17630.1 AT1G61800.1& AT4G03950.1& AT5G54800.1&, Chlore e_gw1.31.19.1, ChlRei Cre16.g663800.t1.2.v5.5, ChrZof Cz03g25010.t1@, MonNeg MNEG_13373; information: {1} glucose 6-phosphate/phosphate translocator 1 ; {1} Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor, putative ; {1} glucose-6-phosphate/phosphate translocator 2 ; {1} GPT1 ; {1} GPT2 ; {1} Nucleotide/sugar transporter family protein ; {1} Nucleotide/sugar transporter family protein ; {1} Triose phosphate transporter ; {2} AT5G17630.1 ; {2} Cre16.g663800.t1.1 ; {2} Nucleotide/sugar transporter family protein ; {3} XPT ; {3} xylulose 5-phosphate phosphate translocator . * Called family CzOrth_5.2-3_04116: AraTha AT1G07960.2, Chlore fgenesh3_pg.C_scaffold_162000001, ChlRei Cre16.g692751.t1.1.v5.5, ChrZof Cz03g29090.t1@, MonNeg MNEG_16259; information: {1} PDIL5-1 ; {1} PDI-like 5-1 ; {1} prolyl 4-hydroxylase, beta polypeptide ; {2} AT1G07960.3 ; {2} ATPDIL5-1,PDIL5-1 ; {2} PDI-like 5-1 ; {3} disulfide isomerase ; {3} PDI-1 . * Called family CzOrth_5.2-3_04121: AraTha AT5G27390.1, Chlore IGS.gm_8_00243, ChlRei Cre13.g564050.t1.1.v5.5, ChrZof Cz04g02050.t1@, MonNeg MNEG_5362; information: {1} hypothetical protein ; {1} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {2} AT5G27390.1 ; {2} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {3} Photosystem II Subunit P-Like ; {3} PSBP-like . * Called family CzOrth_5.2-3_04126: AraTha AT1G03600.1, Chlore estExt_fgenesh3_pg.C_250004, ChlRei Cre05.g243800.t1.2.v5.5, ChrZof Cz04g12110.t1@, MonNeg MNEG_16497; information: {1} CPLD45 ; {1} hypothetical protein ; {1} photosystem II family protein ; {1} Predicted protein ; {1} PSB27 ; {2} AT1G03600.1 ; {2} Cre05.g243800.t1.1 ; {2} photosystem II family protein ; {2} PSB27 ; {3} Photosystem II Subunit 27 ; {3} PSB27-H1-1 . * Called family CzOrth_5.2-3_04140: AraTha AT4G28740.1, Chlore IGS.gm_3_00493, ChlRei Cre06.g266900.t1.1.v5.5, ChrZof Cz05g07170.t1@, MonNeg MNEG_8687; information: {1} hypothetical protein ; {1} unknown protein ; {2} AT4G28740.1 ; {3} Low PSII Accumulating ; {3} LPA1A . * Called family CzOrth_5.2-3_04147: AraTha AT4G21540.1 AT4G21534.1&, Chlore IGS.gm_11_00328, ChlRei Cre12.g530550.t1.1.v5.5, ChrZof Cz05g16250.t1@, MonNeg MNEG_14768; information: {1} Diacylglycerol kinase ; {1} Diacylglycerol kinase family protein ; {1} hypothetical protein ; {1} KDG2 ; {1} sphingosine kinase 1 ; {1} SPHK1 ; {2} AT4G21540.1 ; {2} sphingosine kinase 1 ; {2} SPHK1 ; {3} DGK1 ; {3} Diacylglycerol Kinase . * Called family CzOrth_5.2-3_04180: AraTha AT5G35100.1, Chlore e_gw1.18.185.1, ChlRei Cre12.g561000.t1.1.v5.5, ChrZof Cz06g33060.t1@, MonNeg MNEG_9908; information: {1} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {1} CYN28 ; {1} hypothetical protein ; {1} Peptidyl-prolyl cis-trans isomerase, cyclophilin-type ; {2} AT5G35100.1 ; {2} Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein ; {3} CYP28 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_04198: AraTha AT5G66450.1 AT3G50920.1&, Chlore IGS.gm_15_00072, ChlRei Cre06.g295250.t1.1.v5.5, ChrZof Cz08g10040.t1@, MonNeg MNEG_9295; information: {1} hypothetical protein ; {1} Phosphatidic acid phosphatase (PAP2) family protein ; {1} Phosphatidic acid phosphatase (PAP2) family protein ; {2} AT5G66450.1 ; {2} Phosphatidic acid phosphatase (PAP2) family protein ; {3} PAP ; {3} Phosphatidate Phosphatase . * Called family CzOrth_5.2-3_04217: AraTha AT5G52440.1, Chlore gw1.10.302.1, ChlRei Cre08.g371650.t1.2.v5.5, ChrZof Cz09g27050.t1@, MonNeg MNEG_12332; information: {1} Bacterial sec-independent translocation protein mttA/Hcf106 ; {1} HCF106 ; {1} hypothetical protein ; {1} TAT2 ; {1} TatB-like sec-independent protein translocon subunit ; {2} AT5G52440.1 ; {2} Bacterial sec-independent translocation protein mttA/Hcf106 ; {2} Cre08.g371650.t1.1 ; {2} HCF106 ; {3} SRP-Independent Translocase Complex ; {3} TATB . * Called family CzOrth_5.2-3_04238: AraTha AT5G48790.1, Chlore estExt_fgenesh3_pg.C_10051, ChlRei Cre04.g212500.t1.2.v5.5, ChrZof Cz12g08020.t1@, MonNeg MNEG_14921; information: {1} CGL42 ; {1} Domain of unknown function (DUF1995) ; {1} hypothetical protein ; {1} Predicted protein ; {2} AT5G48790.1 ; {2} Cre04.g212500.t1.1 ; {2} Domain of unknown function (DUF1995) ; {3} Low PSII Accumulating ; {3} LPA3A . * Called family CzOrth_5.2-3_04265: AraTha AT5G44650.1, Chlore IGS.gm_1_00615, ChlRei Cre06.g280650.t1.2.v5.5, ChrZof Cz15g08190.t1@, MonNeg MNEG_16546; information: {1} CEST ; {1} CGL59 ; {1} hypothetical protein ; {1} Predicted protein ; {1} unknown protein ; {2} AT5G44650.1 ; {2} AtCEST,CEST ; {2} Cre06.g280650.t1.1 ; {3} Y3IP1 ; {3} Ycf3-Interacting Protein . * Called family CzOrth_5.2-3_04277: AraTha AT5G64040.2, Chlore estExt_Genewise1.C_210135, ChlRei Cre02.g082500.t1.1.v5.5, ChrZof Cz17g10010.t1@, MonNeg MNEG_0526; information: {1} Photosystem I reaction center subunit N, chloroplastic ; {1} Photosystem I reaction center subunit N ; {1} photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) ; {1} PSAN ; {1} PSAN ; {2} AT5G64040.1 ; {2} photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) ; {2} PSAN ; {3} Photosystem I Subunit N ; {3} PSAN1 . * Called family CzOrth_5.2-3_04279: AraTha AT5G45040.1, Chlore gw1.14.493.1, ChlRei Cre16.g670950.t1.2.v5.5, ChrZof Cz17g14110.t1@, MonNeg MNEG_4940; information: {1} Chloroplast cytochrome c ; {1} CYC4 ; {1} Cytochrome c6 ; {1} Cytochrome c ; {2} AT5G45040.1 ; {2} Cre16.g670950.t1.1 ; {2} Cytochrome c ; {3} Cyt c6 ; {3} PETJ . * Called family CzOrth_5.2-3_04296: ChlRei Cre05.g248150.t1.2.v5.5 Cre10.g460350.t1.1.v5.5&, ChrZof Cz02g32040.t1@, CocSub 7910.2.0.227 19266.2.0.227, MonNeg MNEG_8160; information: {1} lysophosphatidylcholine acyltransferase/ lyso-PAF acetyltransferase ; {2} AT1G80950.1 ; {2} AT1G80950.1 ; {2} AT2G45670.1 ; {2} calcineurin B subunit-related ; {2} Cre05.g248150.t1.1 ; {2} Cre05.g248150.t1.1 ; {2} Cre05.g248150.t1.2 ; {2} Phospholipid/glycerol acyltransferase family protein ; {2} Phospholipid/glycerol acyltransferase family protein ; {3} LPCAT ; {3} Lysophosphatidylcholine Acyltransferase . * Called family CzOrth_5.2-3_04314: Chlore IGS.gm_25_00180, ChlRei Cre07.g324200.t1.2.v5.5, ChrZof Cz01g13260.t1@, CocSub 28345.2.0.227, MonNeg MNEG_16553; information: {1} betaine lipid synthase ; {1} BTA1 ; {1} Diacylglyceryl-N,N,N-trimethylhomoserine synthesis protein ; {2} Cre07.g324200.t1.1 ; {2} Cre07.g324200.t1.1 ; {2} Cre07.g324200.t1.2 ; {2} Diacylglyceryl-N,N,N-trimethylhomoserine synthesis protein ; {3} Betaine Lipid Synthase ; {3} BTA . * Called family CzOrth_5.2-3_04384: Chlore fgenesh3_pm.C_scaffold_11000013, ChlRei Cre02.g093450.t1.2.v5.5, ChrZof Cz03g13070.t1@, CocSub 11707.2.0.227, MonNeg MNEG_7354; information: {1} FBA2 ; {1} Fructose-1,6-bisphosphate aldolase ; {1} fructose-bisphosphate aldolase, class I ; {2} Aldolase superfamily protein ; {2} Aldolase superfamily protein ; {2} AT3G52930.1 ; {2} AT4G26530.2 ; {2} Cre02.g093450.t1.1 ; {2} Cre02.g093450.t1.1 ; {2} Cre02.g093450.t1.2 ; {2} Fructose-1,6-bisphosphate aldolase ; {3} FBA ; {3} Fructose-Bisphosphate Aldolase . * Called family CzOrth_5.2-3_04408: Chlore estExt_Genewise1.C_30591, ChlRei Cre06.g278213.t1.1.v5.5, ChrZof Cz04g04130.t1@, CocSub 46127.2.0.227, MonNeg MNEG_13032; information: {1} LHCA6 ; {1} Light-harvesting protein of photosystem I ; {1} light-harvesting protein of photosystem I ; {2} AT3G47470.1 ; {2} AT3G47470.1 ; {2} CAB4,LHCA4 ; {2} CAB4,LHCA4 ; {2} Cre06.g278213.t1.1 ; {2} Cre13.g598900.t1.1 ; {2} Cre13.g598900.t1.1 ; {2} Cre13.g598900.t1.2 ; {2} Cre13.g598900.t1.2 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} Light-harvesting protein of photosystem I ; {3} LHC2 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_04442: Chlore e_gw1.8.131.1, ChlRei Cre02.g088250.t1.2.v5.5, ChrZof Cz04g37050.t1@, CocSub 16677.2.0.227 16767.2.0.227&, MonNeg MNEG_0624; information: {1} (acyl-carrier-protein) S-malonyltransferase ; {2} Ankyrin repeat family protein ; {2} AT2G03430.1 ; {2} AT2G30200.1 ; {2} AT2G30200.1 ; {2} catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding ; {2} catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding ; {2} Cre02.g088250.t1.1 ; {2} Cre02.g088250.t1.1 ; {2} Cre02.g088250.t1.1 ; {2} Cre02.g088250.t1.2 ; {2} Cre02.g088250.t1.2 ; {3} Malonyl-CoA:ACP Acyltransferase ; {3} MCT2 . * Called family CzOrth_5.2-3_04464: Chlore e_gw1.3.356.1, ChlRei Cre12.g538650.t1.1.v5.5, ChrZof Cz05g21010.t1@, CocSub 7432.2.0.227, MonNeg MNEG_5542; information: {1} HEM4 ; {1} uroporphyrinogen III methyltransferase ; {1} Uroporphyrinogen-III synthase ; {2} AT5G40850.1 ; {2} AT5G40850.1 ; {2} Cre12.g538650.t1.1 ; {2} UPM1 ; {2} UPM1 ; {2} urophorphyrin methylase 1 ; {2} urophorphyrin methylase 1 ; {2} Uroporphyrinogen-III synthase ; {3} SUMT3 ; {3} Uroporphyrin III C-Methyltransferase . * Called family CzOrth_5.2-3_04485: Chlore IGS.gm_15_00310, ChlRei Cre01.g031900.t1.1.v5.5, ChrZof Cz06g00210.t1@, CocSub 11092.2.0.227, MonNeg MNEG_4254; information: {1} hypothetical protein ; {2} AT1G11390.1 ; {2} AT1G11390.1 ; {2} Cre01.g031900.t1.1 ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {3} ABKC ; {3} serine threonine kinase . * Called family CzOrth_5.2-3_04508: Chlore fgenesh3_pg.C_scaffold_18000104, ChlRei Cre02.g092600.t1.2.v5.5, ChrZof Cz06g22110.t1@, CocSub 17262.2.0.227, MonNeg MNEG_1700; information: {1} Coproporphyrinogen III oxidase ; {1} coproporphyrinogen III oxidase ; {1} CPX2 ; {2} AT1G03475.1 ; {2} AT1G03475.1 ; {2} ATCPO-I,HEMF1,LIN2 ; {2} ATCPO-I,HEMF1,LIN2 ; {2} Coproporphyrinogen III oxidase ; {2} Coproporphyrinogen III oxidase ; {2} Cre02.g092600.t1.1 ; {2} Cre02.g092600.t1.1 ; {2} Cre02.g092600.t1.2 ; {3} Coproporphyrinogen-III Oxidase ; {3} CPOX1 . * Called family CzOrth_5.2-3_04526: Chlore gw1.3.581.1, ChlRei Cre12.g546150.t1.2.v5.5, ChrZof Cz07g02140.t1@, CocSub 64596.2.0.227, MonNeg MNEG_2875; information: {1} Cytochrome b6f complex PetM subunit ; {1} Cytochrome b6-f complex subunit 7, chloroplastic ; {1} PETM ; {2} Cre12.g546150.t1.1 ; {2} Cre12.g546150.t1.1 ; {2} Cre12.g546150.t1.2 ; {2} Cytochrome b6f complex PetM subunit ; {3} Cyt b6f Subunit VII ; {3} PETM . * Called family CzOrth_5.2-3_04560: Chlore IGS.gm_16_00238, ChlRei Cre16.g686173.t1.1.v5.5, ChrZof Cz08g00290.t1@, CocSub 57768.2.0.227, MonNeg MNEG_2960; information: {1} hypothetical protein ; {2} AT4G34870.1 ; {2} ATCYP1,ROC5 ; {2} Cre01.g070500.t1.1 ; {2} Cre01.g070500.t1.1 ; {2} Cre01.g070500.t1.2 ; {2} Cre01.g070500.t1.2 ; {2} Cre16.g686173.t1.1 ; {2} rotamase cyclophilin 5 ; {3} CYP5 ; {3} peptidyl-prolyl cis-trans isomerase . * Called family CzOrth_5.2-3_04606: Chlore estExt_fgenesh3_pg.C_100085, ChlRei Cre06.g278144.t1.1.v5.5, ChrZof Cz09g13140.t1@, CocSub 57245.2.0.227, MonNeg MNEG_12511; information: {1} hypothetical protein ; {2} Cre06.g278144.t1.1 ; {2} Cre13.g595700.t1.1 ; {2} Cre13.g595700.t1.1 ; {2} Cre13.g595700.t1.2 ; {2} Cre13.g595700.t1.2 ; {3} Photosystem II Subunit P ; {3} PSBP2 . * Called family CzOrth_5.2-3_04615: Chlore IGS.gm_2_00006, ChlRei Cre02.g078507.t1.2.v5.5, ChrZof Cz09g22190.t1@, CocSub 61150.2.0.227, MonNeg MNEG_2835; information: {1} hypothetical protein ; {2} AT1G03600.1 ; {2} Cre02.g078507.t1.1 ; {2} Cre02.g078507.t1.1 ; {2} Cre02.g078507.t1.2 ; {2} photosystem II family protein ; {2} PSB27 ; {3} Photosystem II Subunit 27 ; {3} PSB27-H1-2 . * Called family CzOrth_5.2-3_04633: Chlore fgenesh3_pg.C_scaffold_20000114, ChlRei Cre12.g505850.t1.2.v5.5, ChrZof Cz10g21030.t1@, CocSub 27626.2.0.227, MonNeg MNEG_6031; information: {1} Chaperonin 23 ; {1} chaperonin ; {1} CPN23 ; {2} AT5G20720.1 ; {2} AT5G20720.2 ; {2} ATCPN21,CHCPN10,CPN10,CPN20,CPN21 ; {2} ATCPN21,CHCPN10,CPN10,CPN20,CPN21 ; {2} chaperonin 20 ; {2} chaperonin 20 ; {2} Chaperonin 23 ; {2} Cre12.g505850.t1.1 ; {2} Cre12.g505850.t1.1 ; {2} Cre12.g505850.t1.2 ; {3} chloroplastic 20kda chaperonin ; {3} CPN20 . * Called family CzOrth_5.2-3_04645: Chlore IGS.gm_9_00045 gw1.33.65.1&, ChlRei Cre06.g306350.t1.2.v5.5, ChrZof Cz11g03180.t1@, CocSub 8444.2.0.227, MonNeg MNEG_9623; information: {1} FDX3 ; {1} Ferredoxin ; {1} hypothetical protein ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} AT1G60950.1 ; {2} AT1G60950.1 ; {2} ATFD2,FED A ; {2} ATFD2,FED A ; {2} Cre06.g306350.t1.1 ; {2} Cre06.g306350.t1.1 ; {2} Cre06.g306350.t1.2 ; {2} Ferredoxin ; {3} FDX3 ; {3} Ferredoxin . * Called family CzOrth_5.2-3_04659: Chlore estExt_Genewise1.C_10513, ChlRei Cre06.g288700.t1.2.v5.5, ChrZof Cz11g26070.t1 Cz07g16090.t1@&, CocSub 23316.2.0.227, MonNeg MNEG_13823 MNEG_15406&; information: {1} Fe-S oxidoreductase ; {1} Glycolate dehydrogenase ; {1} GYD1 ; {1} hypothetical protein ; {2} AT4G36400.1 ; {2} AT4G36400.2 ; {2} Cre06.g288700.t1.1 ; {2} Cre06.g288700.t1.1 ; {2} Cre06.g288700.t1.2 ; {2} FAD-linked oxidases family protein ; {2} FAD-linked oxidases family protein ; {2} Glycolate dehydrogenase ; {3} FDX5 ; {3} Ferredoxin . * Called family CzOrth_5.2-3_04671: Chlore estExt_Genewise1.C_130161, ChlRei Cre12.g508750.t1.2.v5.5, ChrZof Cz12g16070.t1@, CocSub 7387.2.0.227 66689.2.0.227& 44831.2.0.227&, MonNeg MNEG_1349 MNEG_13097&; information: {1} Chlorophyll a-b binding protein ; {1} Chlorophyll a-b binding protein ; {1} LHCA2 ; {1} Light-harvesting protein of photosystem I ; {2} AT1G19150.1 ; {2} AT1G19150.1 ; {2} AT1G61520.1 ; {2} AT5G01530.1 ; {2} Cre12.g508750.t1.1 ; {2} Cre12.g508750.t1.1 ; {2} Cre12.g508750.t1.1 ; {2} Cre12.g508750.t1.2 ; {2} Cre12.g508750.t1.2 ; {2} LHCA2*1,LHCA6 ; {2} LHCA2*1,LHCA6 ; {2} LHCA3 ; {2} LHCB4.1 ; {2} light harvesting complex photosystem II ; {2} Light-harvesting protein of photosystem I ; {2} Light-harvesting protein of photosystem I ; {2} photosystem I light harvesting complex gene 3 ; {2} photosystem I light harvesting complex gene 6 ; {2} photosystem I light harvesting complex gene 6 ; {3} LHC6 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_04682: Chlore estExt_Genewise1.C_120235, ChlRei Cre04.g222700.t1.2.v5.5, ChrZof Cz13g02110.t1@, CocSub 47721.2.0.227, MonNeg MNEG_11489 MNEG_8092& MNEG_10394& MNEG_11651& MNEG_12031&; information: {1} Elongation factor 3 ; {1} Elongation factor 3 ; {1} [NU+] prion formation protein 1 ; {2} AT3G54540.1 ; {2} AT3G54540.1 ; {2} ATGCN4,GCN4 ; {2} ATGCN4,GCN4 ; {2} Cre04.g222700.t1.1 ; {2} Cre04.g222700.t1.1 ; {2} Cre04.g222700.t1.2 ; {2} general control non-repressible 4 ; {2} general control non-repressible 4 ; {3} EF3 ; {3} elongation factor abc-type . * Called family CzOrth_5.2-3_04703: Chlore IGS.gm_11_00351, ChlRei Cre09.g407200.t1.2.v5.5, ChrZof Cz14g22040.t1@, CocSub 36710.2.0.227, MonNeg MNEG_1298; information: {1} Carotenoid isomerase ; {2} AT1G57770.1 ; {2} AT1G57770.1 ; {2} Cre09.g407200.t1.1 ; {2} Cre09.g407200.t1.1 ; {2} Cre09.g407200.t1.2 ; {2} FAD/NAD(P)-binding oxidoreductase family protein ; {2} FAD/NAD(P)-binding oxidoreductase family protein ; {3} carotene isomerase ; {3} CRTISO2 . * Called family CzOrth_5.2-3_04720: Chlore estExt_Genewise1Plus.C_100254, ChlRei Cre14.g629750.t2.1.v5.5 Cre14.g628650.t1.2.v5.5& Cre14.g629700.t1.1.v5.5&, ChrZof Cz15g18140.t1@ Cz09g11240.t1@& Cz11g24140.t1&, CocSub 34895.2.0.227, MonNeg MNEG_2538 MNEG_1214&; information: {1} malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) ; {1} malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) ; {1} MME2 ; {1} MME3 ; {1} MME4 ; {1} NADP malic enzyme ; {1} NADP malic enzyme ; {2} AT5G25880.1 ; {2} AT5G25880.1 ; {2} AT5G25880.1 ; {2} ATNADP-ME3,NADP-ME3 ; {2} ATNADP-ME3,NADP-ME3 ; {2} ATNADP-ME3,NADP-ME3 ; {2} Cre14.g628650.t1.1 ; {2} Cre14.g629750.t2.1 ; {2} NADP-malic enzyme 3 ; {2} NADP-malic enzyme 3 ; {2} NADP-malic enzyme 3 ; {2} NADP malic enzyme ; {3} MME2 ; {3} MME3 ; {3} MME4 ; {3} NADP-Malic Enzyme ; {3} NADP-Malic Enzyme . * Called family CzOrth_5.2-3_04736: Chlore e_gw1.19.208.1, ChlRei Cre16.g650100.t1.2.v5.5, ChrZof Cz16g12040.t1@, CocSub 52753.2.0.227, MonNeg MNEG_10895; information: {1} hypothetical protein ; {1} PETN ; {1} Subunit of the chloroplast cytochrome b6f complex ; {2} ATCG00210.1 ; {2} Cre16.g650100.t1.1 ; {2} Cre16.g650100.t1.1 ; {2} Cre16.g650100.t1.2 ; {2} electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs ; {2} Subunit of the chloroplast cytochrome b6f complex ; {3} Cyt b6f Subunit VIII ; {3} PETN . * Called family CzOrth_5.2-3_04745: Chlore e_gw1.7.200.1, ChlRei Cre09.g394325.t1.1.v5.5 Cre13.g576760.t1.1.v5.5&, ChrZof Cz17g16050.t1@ Cz07g29280.t1@&, CocSub 59463.2.0.227 58256.2.0.227&, MonNeg MNEG_0020 MNEG_2527&; information: {1} Carotene biosynthesis-related protein CBR ; {1} Early light-inducible protein ; {1} ELI3 ; {1} hypothetical protein ; {2} AT3G22840.1 ; {2} AT3G22840.1 ; {2} AT3G22840.1 ; {2} AT4G14690.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Cre02.g129000.t1.1 ; {2} Cre02.g129000.t1.2 ; {2} Cre02.g130500.t1.1 ; {2} Cre02.g130500.t1.1 ; {2} Cre02.g130500.t1.2 ; {2} Cre02.g130500.t1.2 ; {2} Cre09.g393173.t1.1 ; {2} Cre09.g394325.t1.1 ; {2} Early light-inducible protein ; {2} Early light-inducible protein ; {2} ELIP2 ; {2} ELIP,ELIP1 ; {2} ELIP,ELIP1 ; {2} ELIP,ELIP1 ; {3} Early Light-Induced Protein Homolog ; {3} Early Light-Induced Protein Homolog ; {3} ELIP1 ; {3} ELIP8 . * Called family CzOrth_5.2-3_04858: AraTha AT2G30570.1, ChrZof Cz19g05110.t1@, CocSub 48009.2.0.227, MonNeg MNEG_0580 MNEG_8492; information: {1} photosystem II reaction center W ; {1} Photosystem II reaction center W protein ; {1} PSBW ; {2} AT2G30570.1 ; {2} photosystem II reaction center W ; {2} PSBW ; {3} Photosystem II Subunit W ; {3} PSBW . * Called family CzOrth_5.2-3_04860: AraTha AT3G63540.1, Chlore fgenesh3_pg.C_scaffold_1000200, ChrZof Cz01g04040.t1@ Cz06g29040.t1@&, MonNeg MNEG_7664 MNEG_10911; information: {1} Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein ; {1} Thylakoid lumenal protein ; {1} thylakoid lumen protein ; {3} P19-1 ; {3} P19-2 ; {3} Thylakoid lumenal 19kDa-2 ; {3} Thylakoid lumenal 19kDa . * Called family CzOrth_5.2-3_05046: ChlRei Cre03.g182050.t1.2.v5.5, ChrZof Cz01g36150.t1@ Cz07g22230.t1@, CocSub 45744.2.0.227&, MonNeg MNEG_10355; information: {1} hypothetical protein ; {2} AMP-dependent synthetase and ligase family protein ; {2} AT4G23850.1 ; {2} AT5G27600.1 ; {2} ATLACS7,LACS7 ; {2} Cre03.g182050.t1.1 ; {2} Cre12.g507400.t1.1 ; {2} Cre12.g507400.t1.2 ; {2} LACS4 ; {2} long-chain acyl-CoA synthetase 7 ; {3} LACS1 ; {3} LACS4 ; {3} Long Chain Acyl-CoA Synthetase . * Called family CzOrth_5.2-3_05055: ChlRei Cre02.g116750.t1.1.v5.5, ChrZof Cz04g31080.t1@ Cz04g32030.t1@, MonNeg MNEG_10484 MNEG_8366& MNEG_10187&; information: {1} ATP1A ; {1} ATP synthase, H+ transporting ; {1} F1F0 ATP synthase, alpha subunit ; {1} F-type H+-transporting ATPase subunit alpha ; {1} Mitochondrial F1F0 ATP synthase, alpha subunit ; {2} AT2G07698.1 ; {2} ATPase, F1 complex, alpha subunit protein ; {3} ATPA2 ; {3} ATPA ; {3} atp alpha, mitchondrial . * Called family CzOrth_5.2-3_05100: ChlRei Cre04.g228150.t1.2.v5.5 Cre07.g320550.t1.2.v5.5 Cre07.g319600.t1.2.v5.5& Cre07.g318500.t1.1.v5.5&, ChrZof Cz12g02090.t1@ Cz01g19090.t1@& Cz03g04160.t1& Cz10g26200.t1@& Cz14g16140.t1@& Cz14g16150.t1@&, MonNeg MNEG_0978; information: {1} 3-ketoacyl-CoA synthase 1 ; {2} 3-ketoacyl-CoA synthase 10 ; {2} 3-ketoacyl-CoA synthase 1 ; {2} 3-ketoacyl-CoA synthase 6 ; {2} AT1G01120.1 ; {2} AT1G68530.1 ; {2} AT2G26250.1 ; {2} CER6,CUT1,G2,KCS6,POP1 ; {2} Cre04.g228150.t1.1 ; {2} Cre07.g319600.t1.1 ; {2} Cre07.g320550.t1.1 ; {2} FDH,KCS10 ; {2} KCS1 ; {3} LCKAS10 ; {3} LCKAS11 ; {3} LCKAS2 ; {3} LCKAS3 ; {3} LCKAS4 ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase . * Called family CzOrth_5.2-3_05115: AraTha AT1G78050.1 AT1G22170.1, ChlRei Cre03.g166950.t1.2.v5.5, ChrZof Cz06g01110.t1@, MonNeg MNEG_0235&; information: {1} PGM5 ; {1} PGM ; {1} phosphoglycerate/bisphosphoglycerate mutase ; {1} Phosphoglycerate mutase ; {1} Phosphoglycerate mutase family protein ; {1} phosphoglycerate mutase ; {2} AT1G22170.1 ; {2} Cre03.g166950.t1.1 ; {2} Phosphoglycerate mutase family protein ; {3} PGM5 ; {3} Phosphoglycerate Mutase . * Called family CzOrth_5.2-3_05175: AraTha AT3G24190.1 AT2G39190.2&, ChlRei Cre04.g215400.t1.2.v5.5, ChrZof Cz12g16050.t1@, CocSub 37959.2.0.227; information: {1} ABC1/COQ8 ser/thr kinase ; {1} AKC3 ; {1} ATATH8 ; {1} Protein kinase superfamily protein ; {1} Protein kinase superfamily protein ; {2} ABC1/COQ8 ser/thr kinase ; {2} AT3G24190.1 ; {2} AT3G24190.1 ; {2} Cre04.g215400.t1.1 ; {2} Cre04.g215400.t1.1 ; {2} Cre04.g215400.t1.2 ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {3} COQ8 ; {3} serine threonine kinase . * Called family CzOrth_5.2-3_05179: AraTha AT1G31800.1, Chlore fgenesh3_pg.C_scaffold_4000113&, ChlRei Cre02.g142266.t1.1.v5.5 Cre16.g678437.t1.1.v5.5&, ChrZof Cz13g16110.t1@, CocSub 52277.2.0.227, MonNeg MNEG_0986& MNEG_14870&; information: {1} CYP97A3 ; {1} Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase ; {1} Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase ; {1} cytochrome P450, family 97, subfamily A, polypeptide 3 ; {1} hypothetical protein ; {2} AT1G31800.1 ; {2} AT1G31800.1 ; {2} AT1G31800.1 ; {2} Cre01.g067400.t1.1 ; {2} Cre02.g142266.t1.1 ; {2} Cre15.g645950.t1.1 ; {2} Cre15.g645950.t1.1 ; {2} Cre15.g645950.t1.2 ; {2} Cre15.g645950.t1.2 ; {2} CYP97A3,LUT5 ; {2} CYP97A3,LUT5 ; {2} CYP97A3,LUT5 ; {2} Cytochrome P450, CYP97 superfamily; carotenoid hydroxylase ; {2} cytochrome P450, family 97, subfamily A, polypeptide 3 ; {2} cytochrome P450, family 97, subfamily A, polypeptide 3 ; {2} cytochrome P450, family 97, subfamily A, polypeptide 3 ; {3} CYP97A-1 ; {3} Cytochrome P450-Type Carotene Hydroxylase ; {3} LUT5 . * Called family CzOrth_5.2-3_05195: AraTha AT3G47520.1 AT4G17260.1&, Chlore e_gw1.1.262.1, ChlRei Cre03.g194850.t1.2.v5.5, ChrZof Cz01g16230.t1@, MonNeg MNEG_16063&; information: {1} hypothetical protein ; {1} Lactate/malate dehydrogenase family protein ; {1} malate dehydrogenase ; {1} MDH1 ; {1} MDH ; {1} NAD-dependent malate dehydrogenase, chloroplastic ; {2} AT3G47520.1 ; {2} Cre03.g194850.t1.1 ; {2} malate dehydrogenase ; {2} MDH ; {3} Malate Dehydrogenase ; {3} MDH1 . * Called family CzOrth_5.2-3_05197: AraTha AT1G27510.1 AT4G33630.1&, Chlore fgenesh3_pg.C_scaffold_6000045, ChlRei Cre03.g163500.t1.2.v5.5, ChrZof Cz01g19060.t1@; information: {1} CGLD21 ; {1} EX1 ; {1} Predicted protein ; {1} Protein of unknown function (DUF3506) ; {1} Protein of unknown function (DUF3506) ; {2} AT1G27510.1 ; {2} Cre03.g163500.t1.1 ; {2} Protein of unknown function (DUF3506) ; {3} EXECUTOR1 ; {3} Retrograde Signaling Factor . * Called family CzOrth_5.2-3_05239: AraTha AT1G55670.1, Chlore gw1.14.329.1, ChlRei Cre12.g560950.t1.2.v5.5, ChrZof Cz06g31280.t1@; information: {1} Photosystem I reaction center subunit V ; {1} photosystem I subunit G ; {1} PSAG ; {1} PSAG ; {2} AT1G55670.1 ; {2} Cre12.g560950.t1.1 ; {2} photosystem I subunit G ; {2} PSAG ; {3} Photosystem I Subunit G ; {3} PSAG2 . * Called family CzOrth_5.2-3_05245: AraTha AT4G09010.1, Chlore fgenesh3_kg.C_scaffold_11000004, ChlRei Cre05.g233900.t1.2.v5.5, ChrZof Cz08g14160.t1@; information: {1} APX4 ; {1} ascorbate peroxidase 4 ; {2} APX4,TL29 ; {2} ascorbate peroxidase 4 ; {2} AT4G09010.1 ; {2} Cre05.g233900.t1.1 ; {3} P29 ; {3} Thylakoid lumenal 29kDa . * Called family CzOrth_5.2-3_05264: AraTha AT4G14890.1, Chlore gw1.7.215.1, ChlRei Cre07.g334800.t1.2.v5.5, ChrZof Cz13g08015.t1@; information: {1} 2Fe-2S ferredoxin-like superfamily protein ; {1} FdC2 ; {1} FDX4 ; {1} Ferredoxin ; {2} 2Fe-2S ferredoxin-like superfamily protein ; {2} AT4G14890.1 ; {2} Cre07.g334800.t1.1 ; {3} FDX4 ; {3} Ferredoxin . * Called family CzOrth_5.2-3_05267: AraTha AT4G38370.1, Chlore estExt_fgenesh3_kg.C_150008, ChlRei Cre13.g564000.t1.2.v5.5, ChrZof Cz14g01200.t1@; information: {1} PGM3 ; {1} Phosphoglycerate mutase ; {1} Phosphoglycerate mutase family protein ; {2} AT4G38370.1 ; {2} Cre13.g564000.t1.1 ; {2} Phosphoglycerate mutase family protein ; {3} PGM3 ; {3} Phosphoglycerate Mutase . * Called family CzOrth_5.2-3_05342: AraTha AT1G49975.1, ChlRei Cre02.g086100.t1.2.v5.5, ChrZof Cz11g15120.t1@, MonNeg MNEG_11625; information: {1} CGL40 ; {1} hypothetical protein ; {1} Predicted protein ; {1} unknown protein ; {2} AT1G49975.1 ; {2} Cre02.g086100.t1.1 ; {3} Photosystem I Subunit N ; {3} PSAN2 . * Called family CzOrth_5.2-3_05371: Chlore IGS.gm_4_00399, ChlRei Cre07.g325727.t1.1.v5.5, ChrZof Cz01g19080.t1@, CocSub 13405.2.0.227, MonNeg MNEG_5201&; information: {1} hypothetical protein ; {2} AT1G11390.1 ; {2} AT1G61640.1 ; {2} Cre07.g325727.t1.1 ; {2} Cre26.g772650.t1.1 ; {2} Cre26.g772650.t1.1 ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {3} ABKC ; {3} serine threonine kinase . * Called family CzOrth_5.2-3_05402: Chlore IGS.gm_22_00177, ChlRei Cre06.g258700.t1.1.v5.5, ChrZof Cz04g02090.t1@, CocSub 26440.2.0.227; information: {1} PYC1 ; {1} Pyruvate carboxylase ; {2} AT1G03090.2 ; {2} AT1G03090.2 ; {2} Cre06.g258700.t1.1 ; {2} MCCA ; {2} MCCA ; {2} methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) ; {2} methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) ; {2} Pyruvate carboxylase ; {3} PYC ; {3} Pyruvate Carboxylase . * Called family CzOrth_5.2-3_05403: Chlore e_gw1.13.141.1, ChlRei Cre07.g344950.t1.2.v5.5, ChrZof Cz04g09210.t1@, CocSub 44136.2.0.227, MonNeg MNEG_16108&; information: {1} Chlorophyll a-b binding protein ; {1} LHCA9 ; {1} Light-harvesting protein of photosystem I ; {2} AT1G45474.2 ; {2} AT3G47470.1 ; {2} CAB4,LHCA4 ; {2} Cre07.g344950.t1.1 ; {2} Cre07.g344950.t1.1 ; {2} Cre07.g344950.t1.2 ; {2} LHCA5 ; {2} light-harvesting chlorophyll-protein complex I subunit A4 ; {2} Light-harvesting protein of photosystem I ; {2} photosystem I light harvesting complex gene 5 ; {3} LHC3 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_05429: Chlore estExt_fgenesh3_pg.C_80203, ChlRei Cre12.g557750.t1.1.v5.5, ChrZof Cz06g35060.t1@, CocSub 64764.2.0.227, MonNeg MNEG_5016&; information: {1} 2-acylglycerol O-acyltransferase 2-B ; {2} AT3G51520.1 ; {2} AT3G51520.1 ; {2} Cre12.g557750.t1.1 ; {2} diacylglycerol acyltransferase family ; {2} diacylglycerol acyltransferase family ; {3} DGAT2F ; {3} Diacylglycerol Acyltransferase Type 2B . * Called family CzOrth_5.2-3_05435: Chlore IGS.gm_34_00015, ChlRei Cre01.g020305.t1.1.v5.5, ChrZof Cz07g14015.t1@, CocSub 52340.2.0.227; information: {2} Cre01.g020305.t1.1 ; {3} SDHD ; {3} Succinate Dehydrogenase . * Called family CzOrth_5.2-3_05436: Chlore fgenesh3_pg.C_scaffold_23000050, ChlRei Cre01.g020350.t1.2.v5.5, ChrZof Cz07g14020.t1@, CocSub 52339.2.0.227; information: {1} SDH3 ; {1} Succinate dehydrogenase subunit b560 ; {2} Cre01.g020350.t1.1 ; {2} Cre01.g020350.t1.1 ; {2} Cre01.g020350.t1.2 ; {2} Succinate dehydrogenase subunit b560 ; {3} SDHC ; {3} Succinate Dehydrogenase . * Called family CzOrth_5.2-3_05476: Chlore estExt_fgenesh3_kg.C_30002, ChlRei Cre10.g423250.t1.2.v5.5, ChrZof Cz12g06020.t1@, CocSub 54363.2.0.227, MonNeg MNEG_7251&; information: {1} malate dehydrogenase ; {1} MDH2 ; {1} NAD-dependent malate dehydrogenase ; {2} AT1G53240.1 ; {2} AT2G22780.1 ; {2} Cre10.g423250.t1.1 ; {2} Cre10.g423250.t1.1 ; {2} Cre10.g423250.t1.2 ; {2} Lactate/malate dehydrogenase family protein ; {2} mMDH1 ; {2} NAD-dependent malate dehydrogenase ; {2} peroxisomal NAD-malate dehydrogenase 1 ; {2} PMDH1 ; {3} Malate Dehydrogenase ; {3} MDH4 . * Called family CzOrth_5.2-3_05506: AraTha AT3G46780.1&, Chlore IGS.gm_12_00212, ChlRei Cre02.g081250.t1.2.v5.5, ChrZof Cz18g10170.t1@, CocSub 55258.2.0.227; information: {1} plastid transcriptionally active 16 ; {1} PTAC16 ; {2} AT3G46780.1 ; {2} Cre02.g081250.t1.1 ; {2} Cre02.g081250.t1.1 ; {2} Cre02.g081250.t1.2 ; {2} plastid transcriptionally active 16 ; {2} PTAC16 ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC62 . * Called family CzOrth_5.2-3_05527: ChlRei Cre12.g484000.t1.2.v5.5, ChrZof Cz02g17060.t1@, CocSub 9998.2.0.227, MonNeg MNEG_10610 MNEG_12830& MNEG_14972&; information: {1} acetyl-CoA carboxylase carboxyltransferase subunit beta ; {1} acetyl-CoA carboxylase subunit beta ; {1} hypothetical protein ; {2} acetyl-CoA carboxylase carboxyl transferase subunit beta ; {2} acetyl-CoA carboxylase carboxyl transferase subunit beta ; {2} ATCG00500.1 ; {2} ATCG00500.1 ; {2} Cre12.g484000.t1.1 ; {2} Cre12.g484000.t1.1 ; {2} Cre12.g484000.t1.2 ; {3} Acetyl-CoA Carboxylase ; {3} ACX1 . * Called family CzOrth_5.2-3_05556: ChlRei Cre07.g338451.t1.1.v5.5, ChrZof Cz05g01180.t1@, CocSub 53601.2.0.227, MonNeg MNEG_13260; information: {1} fructose 1,6-bisphosphatase II ; {2} Cre07.g338451.t1.1 ; {3} FBP ; {3} Fructose-1,6-Bisphosphatase . * Called family CzOrth_5.2-3_05585: ChlRei Cre01.g022500.t1.2.v5.5, ChrZof Cz07g26110.t1@, CocSub 46220.2.0.227, MonNeg MNEG_9195; information: {1} malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) ; {1} MME5 ; {1} NADP malic enzyme ; {2} AT1G79750.1 ; {2} AT2G19900.1 ; {2} ATNADP-ME1,NADP-ME1 ; {2} ATNADP-ME4,NADP-ME4 ; {2} Cre01.g022500.t1.1 ; {2} Cre01.g022500.t1.1 ; {2} Cre01.g022500.t1.2 ; {2} NADP-malic enzyme 1 ; {2} NADP-malic enzyme 4 ; {2} NADP malic enzyme ; {3} MME5 ; {3} NADP-Malic Enzyme . * Called family CzOrth_5.2-3_05600: ChlRei Cre06.g272650.t1.2.v5.5, ChrZof Cz09g32070.t1@, CocSub 48543.2.0.227, MonNeg MNEG_14186; information: {1} hypothetical protein ; {1} LHCA8 ; {1} Light-harvesting protein of photosystem I ; {2} AT1G45474.1 ; {2} AT1G45474.1 ; {2} Cre06.g272650.t1.1 ; {2} Cre06.g272650.t1.1 ; {2} Cre06.g272650.t1.2 ; {2} LHCA5 ; {2} LHCA5 ; {2} Light-harvesting protein of photosystem I ; {2} photosystem I light harvesting complex gene 5 ; {2} photosystem I light harvesting complex gene 5 ; {3} LHC4 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_05604: ChlRei Cre03.g213313.t1.1.v5.5, ChrZof Cz10g18200.t1@, CocSub 31421.2.0.227, MonNeg MNEG_13209; information: {1} short-chain dehydrogenase/reductase ; {2} AT1G24360.1 ; {2} AT1G24360.1 ; {2} Cre03.g213313.t1.1 ; {2} Cre19.g757250.t1.1 ; {2} Cre19.g757250.t1.1 ; {2} Cre19.g757250.t1.2 ; {2} Cre19.g757250.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Beta-Ketoacyl ACP Reductase ; {3} KAR1 . * Called family CzOrth_5.2-3_05619: ChlRei Cre16.g675000.t1.1.v5.5, ChrZof Cz12g20200.t1@, CocSub 57875.2.0.227, MonNeg MNEG_0702; information: {1} hypothetical protein ; {1} UPS2 ; {1} Uroporphyrinogen-III synthase ; {2} Cre16.g675000.t1.1 ; {2} Uroporphyrinogen-III synthase ; {3} SUMT1 ; {3} Uroporphyrin III C-Methyltransferase . * Called family CzOrth_5.2-3_05622: ChlRei Cre17.g740950.t1.2.v5.5, ChrZof Cz14g04020.t1@, CocSub 63572.2.0.227, MonNeg MNEG_7964; information: {1} High intensity light-inducible Lhc-like gene ; {1} high intensity light-inducible lhc-like protein ; {2} AT1G44575.2 ; {2} AT4G28025.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre17.g740950.t1.1 ; {2} Cre17.g740950.t1.1 ; {2} Cre17.g740950.t1.2 ; {2} High intensity light-inducible Lhc-like gene ; {2} NPQ4,PSBS ; {3} High Light-Induced Protein Homolog ; {3} HLIP1 . * Called family CzOrth_5.2-3_05708: Chlore IGS.gm_5_00448, ChlRei Cre17.g699600.t1.2.v5.5, ChrZof Cz03g37060.t1@, MonNeg MNEG_3567; information: {1} hypothetical protein ; {1} SBP2 ; {1} Sugar bisphosphatase ; {2} AT3G55800.1 ; {2} Cre17.g699600.t1.1 ; {2} SBPASE ; {2} sedoheptulose-bisphosphatase ; {3} chloroplastic, Sedoheptulose 1,7 Bisphosphate ; {3} SBP . * Called family CzOrth_5.2-3_05729: Chlore IGS.gm_17_00226, ChlRei Cre03.g146147.t1.1.v5.5, ChrZof Cz04g24050.t1@, MonNeg MNEG_5544; information: {1} chloroplast photosystem II-associated protein ; {2} AT1G44575.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre01.g060850.t1.1 ; {2} Cre01.g060850.t1.2 ; {2} NPQ4,PSBS ; {3} LHC14 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_05747: AraTha AT3G07670.1&, Chlore IGS.gm_4_00188, ChlRei Cre12.g503800.t1.1.v5.5, ChrZof Cz05g09240.t1@, MonNeg MNEG_9800; information: {1} hypothetical protein ; {1} Rubisco methyltransferase family protein ; {2} AT3G07670.1 ; {2} Rubisco methyltransferase family protein ; {3} RBCMT ; {3} RuBisCO large subunit methyltransferase . * Called family CzOrth_5.2-3_05844: Chlore IGS.gm_9_00395, ChlRei Cre10.g450550.t1.1.v5.5, ChrZof Cz14g25130.t1@, CocSub 60677.2.0.227&, MonNeg MNEG_0699; information: {1} PAO3 ; {1} pheophorbide a oxygenase ; {1} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {2} ACD1,LLS1,PAO ; {2} AT2G24820.1 ; {2} AT3G44880.1 ; {2} Cre06.g305650.t1.1 ; {2} Cre06.g305650.t1.2 ; {2} Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain ; {2} Pheophorbide a oxygenase, Rieske iron-sulfur cluster protein ; {2} TIC55-II ; {2} translocon at the inner envelope membrane of chloroplasts 55-II ; {3} PAO5 ; {3} Pheophorbide a Oxygenase . * Called family CzOrth_5.2-3_05852: Chlore estExt_Genewise1Plus.C_120203, ChlRei Cre01.g012600.t1.1.v5.5, ChrZof Cz15g21100.t1@, MonNeg MNEG_2259 MNEG_2258&; information: {1} GPM2 ; {1} phosphoglucomutase 2 ; {1} Phosphoglucomutase ; {1} phosphoglucomutase ; {3} GPM2 ; {3} Phosphoglucomutase . * Called family CzOrth_5.2-3_05878: Chlore IGS.gm_18_00094&, ChlRei Cre12.g558900.t1.2.v5.5, ChrZof Cz06g16040.t1@, CocSub 56707.2.0.227&, MonNeg MNEG_3847 MNEG_13316; information: {1} Cytochrome b6f complex subunit V ; {1} hypothetical protein ; {1} PETO ; {2} Cre12.g558900.t1.1 ; {2} Cre12.g558900.t1.1 ; {2} Cre12.g558900.t1.2 ; {2} Cytochrome b6f complex subunit V ; {3} Cyt b6f Subunit V ; {3} PETO . * Called family CzOrth_5.2-3_05924: AraTha AT1G10310.1, Chlore IGS.gm_20_00236 IGS.gm_14_00006& IGS.gm_18_00268&, ChrZof Cz07g30010.t1@, CocSub 66711.2.0.227 42882.2.0.227& 66712.2.0.227& 20662.2.0.227&, MonNeg MNEG_9416&; information: {1} hypothetical protein ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {2} AT1G24360.1 ; {2} AT1G24360.1 ; {2} AT3G55290.1 ; {2} AT5G10050.1 ; {2} Cre03.g172000.t1.1 ; {2} Cre03.g172000.t1.1 ; {2} Cre03.g172000.t1.2 ; {2} Cre03.g172000.t1.2 ; {2} Cre12.g495850.t1.1 ; {2} Cre12.g495850.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Beta-Ketoacyl ACP Reductase ; {3} KAR3 . * Called family CzOrth_5.2-3_05975: AraTha AT3G61470.1 AT1G19150.1&, Chlore IGS.gm_12_00329, ChrZof Cz10g10160.t1@, MonNeg MNEG_5738; information: {1} Chlorophyll a-b binding protein 7, chloroplastic ; {1} LHCA2 ; {1} LHCA6 ; {1} photosystem I light-harvesting complex gene 2 ; {1} photosystem I light-harvesting complex gene 6 ; {3} LHC5 ; {3} LHC Proteins Putatively Associated with PSI . * Called family CzOrth_5.2-3_06023: Chlore estExt_Genewise1Plus.C_100022, ChrZof Cz14g11080.t1 Cz14g11120.t1& Cz14g11130.t1@&, CocSub 66127.2.0.227, MonNeg MNEG_8916; information: {1} hypothetical protein ; {3} c4-dicarboxylate transporter ; {3} SLAC1 . * Called family CzOrth_5.2-3_06416: Chlore IGS.gm_3_00104&, ChlRei Cre02.g073700.t1.2.v5.5, ChrZof Cz14g23190.t1@, CocSub 12409.2.0.227; information: {1} UPD3 ; {1} Uroporphyrinogen decarboxylase ; {2} AT2G40490.1 ; {2} AT3G14930.1 ; {2} Cre02.g073700.t1.1 ; {2} Cre02.g073700.t1.1 ; {2} Cre02.g073700.t1.2 ; {2} HEME1 ; {2} HEME2 ; {2} Uroporphyrinogen decarboxylase ; {2} Uroporphyrinogen decarboxylase ; {3} UROD3 ; {3} Uroporphyrinogen III Decarboxylase . * Called family CzOrth_5.2-3_06436: Chlore IGS.gm_1_00123, ChlRei Cre03.g184500.t1.2.v5.5, ChrZof Cz01g24010.t1@; information: {2} ARC6 ; {2} AT5G42480.1 ; {2} Chaperone DnaJ-domain superfamily protein ; {2} Cre03.g184500.t1.1 ; {3} Accumulation/Replication of Chloroplasts ; {3} ARC6-3 . * Called family CzOrth_5.2-3_06451: Chlore IGS.gm_11_00125, ChlRei Cre16.g683400.t1.2.v5.5 Cre11.g467563.t1.1.v5.5&, ChrZof Cz03g12090.t1@; information: {2} AT1G22180.2 ; {2} AT4G08690.2 ; {2} Cre16.g683400.t1.1 ; {2} Cre18.g750200.t1.1 ; {2} Cre18.g750200.t1.2 ; {2} Sec14p-like phosphatidylinositol transfer family protein ; {2} Sec14p-like phosphatidylinositol transfer family protein ; {3} Chloroplast Sec14-Like Protein ; {3} CPSFL2 . * Called family CzOrth_5.2-3_06531: Chlore IGS.gm_4_00249, ChlRei Cre04.g211850.t1.2.v5.5 Cre02.g143550.t1.2.v5.5&, ChrZof Cz12g27130.t1@; information: {1} Early light-inducible protein ; {1} ELI4 ; {2} AT3G22840.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre02.g143550.t1.1 ; {2} Cre04.g211850.t1.1 ; {2} ELIP,ELIP1 ; {3} Early Light-Induced Protein Homolog ; {3} ELIP6 . * Called family CzOrth_5.2-3_06537: Chlore fgenesh3_pg.C_scaffold_14000198, ChlRei Cre10.g458250.t1.1.v5.5, ChrZof Cz13g17240.t1@; information: {3} thioredoxin domain containing 9 ; {3} TRXD9-2 . * Called family CzOrth_5.2-3_06546: Chlore fgenesh3_pg.C_scaffold_9000223, ChlRei Cre06.g255300.t1.2.v5.5, ChrZof Cz15g04070.t1@; information: {2} ABA4 ; {2} abscisic acid (aba)-deficient 4 ; {2} AT1G67080.1 ; {2} Cre06.g255300.t1.1 ; {3} Neoxanthin Synthase (ABA4) ; {3} NSY ; {3} NXS . * Called family CzOrth_5.2-3_06562: ChlRei Cre03.g165100.t1.2.v5.5, ChrZof Cz01g05275.t1@, MonNeg MNEG_10354; information: {1} Photosystem I reaction centre, subunit VIII ; {1} photosystem I reaction centre, subunit VIII ; {1} PSAI ; {2} ATCG00510.1 ; {2} Cre03.g165100.t1.1 ; {2} photsystem I subunit I ; {3} Photosystem I Subunit I ; {3} PSAI . * Called family CzOrth_5.2-3_06659: ChlRei Cre09.g393173.t1.1.v5.5, ChrZof Cz02g38160.t1@, MonNeg MNEG_0482; information: {1} Early light-inducible protein ; {1} early light-inducible protein ; {1} ELI2 ; {2} AT3G22840.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre02.g129000.t1.1 ; {2} Cre02.g129000.t1.2 ; {2} ELIP,ELIP1 ; {3} Early Light-Induced Protein Homolog ; {3} ELIP5 . * Called family CzOrth_5.2-3_06897: ChlRei Cre13.g576600.t1.2.v5.5 Cre11.g467720.t2.1.v5.5& Cre16.g675150.t1.1.v5.5& Cre17.g742400.t1.1.v5.5& Cre03.g144011.t1.1.v5.5& Cre03.g175600.t1.1.v5.5& Cre03.g210065.t1.1.v5.5& Cre04.g220000.t1.1.v5.5& Cre05.g236000.t1.1.v5.5& Cre05.g236216.t1.1.v5.5& Cre07.g322350.t1.1.v5.5& Cre09.g397586.t1.1.v5.5&, ChrZof Cz08g22170.t1@, MonNeg MNEG_0832; information: {1} Protein tyrosine kinase ; {1} PTK17 ; {1} Serine/threonine-protein kinase CTR1 ; {2} ACT-like protein tyrosine kinase family protein ; {2} AT1G18160.1 ; {2} AT1G18160.1 ; {2} AT3G63260.1 ; {2} AT4G24480.1 ; {2} AT4G35780.1 ; {2} AT5G03730.1 ; {2} AT5G49760.1 ; {2} AT5G57610.1 ; {2} AtCTR1,CTR1,SIS1 ; {2} ATMRK1 ; {2} Cre01.g056350.t1.1 ; {2} Cre02.g134550.t1.1 ; {2} Cre13.g576600.t1.1 ; {2} Cre19.g755900.t1.1 ; {2} Cre22.g765450.t2.1 ; {2} Leucine-rich repeat protein kinase family protein ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein ; {2} Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain ; {3} CTR1 ; {3} serine threonine kinase . * Called family CzOrth_5.2-3_06940: AraTha AT3G49160.1&, ChlRei Cre03.g144847.t1.1.v5.5 Cre05.g234700.t1.1.v5.5&, ChrZof Cz10g06190.t1@, MonNeg MNEG_11538 MNEG_5248& MNEG_5249&; information: {1} PYK3 ; {1} PYK4 ; {1} Pyruvate kinase ; {1} Pyruvate kinase ; {1} pyruvate kinase family protein ; {1} pyruvate kinase ; {1} pyruvate kinase ; {2} AT5G63680.1 ; {2} AT5G63680.1 ; {2} Cre01.g057900.t1.1 ; {2} Cre01.g057900.t1.2 ; {2} Pyruvate kinase family protein ; {2} Pyruvate kinase family protein ; {3} PYK4 ; {3} Pyruvate Kinase . * Called family CzOrth_5.2-3_07050: ChlRei Cre04.g215000.t1.2.v5.5, ChrZof Cz13g13100.t1@ Cz04g11250.t1@&, MonNeg MNEG_0808; information: {1} Beta-carotene ketolase ; {1} Beta-carotene ketolase ; {1} BKT1 ; {2} Cre04.g215000.t1.1 ; {3} Beta-Ketolase ; {3} Beta-Ketolase ; {3} BKT1 ; {3} BKT2 . * Called family CzOrth_5.2-3_07169: AraTha AT5G64380.1, ChrZof Cz01g04250.t1@, CocSub 57295.2.0.227, MonNeg MNEG_1872&; information: {1} hypothetical protein ; {1} Inositol monophosphatase family protein ; {2} AT5G64380.1 ; {2} Cre12.g510650.t1.1 ; {2} Cre12.g510650.t1.2 ; {2} Fructose-1,6-bisphosphatase ; {2} Inositol monophosphatase family protein ; {3} FBP ; {3} fructose 1,6 bisphophatase chloroplastic . * Called family CzOrth_5.2-3_07183: AraTha AT4G15760.1 AT4G15765.1&, ChrZof Cz05g31040.t1@ Cz11g27080.t1&, CocSub 67238.2.0.227; information: {1} FAD/NAD(P)-binding oxidoreductase family protein ; {1} MO1 ; {1} monooxygenase 1 ; {2} ABA1,ATABA1,ATZEP,IBS3,LOS6,NPQ2,ZEP ; {2} AT5G67030.2 ; {2} Cre12.g503750.t1.1 ; {2} zeaxanthin epoxidase (ZEP) (ABA1) ; {3} Zeaxanthin Epoxidase ; {3} ZEP2 . * Called family CzOrth_5.2-3_07200: AraTha AT1G10500.1, Chlore e_gw1.5.685.1, ChrZof Cz08g08230.t1@; information: {1} chloroplast-localized ISCA-like protein ; {1} CPISCA ; {3} Fe-S Cluster Assembly Factor ; {3} ISC1 . * Called family CzOrth_5.2-3_07217: AraTha AT2G37540.1 AT1G64590.1& AT4G24050.1& AT5G50130.1& AT5G02540.1&, ChrZof Cz04g30040.t1@ Cz13g03170.t1&, MonNeg MNEG_12271; information: {1} hypothetical protein ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC32A . * Called family CzOrth_5.2-3_07247: AraTha AT5G18210.1 AT3G03980.1& AT3G04000.1& AT3G01980.3& AT4G13180.1&, ChrZof Cz16g00050.t1@, MonNeg MNEG_10182; information: {1} 3-oxoacyl-[acyl-carrier-protein] reductase ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {1} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Beta-Ketoacyl ACP Reductase ; {3} KAR2 . * Called family CzOrth_5.2-3_07299: Chlore IGS.gm_20_00069, ChrZof Cz13g03160.t1@, CocSub 52566.2.0.227, MonNeg MNEG_8872&; information: {1} hypothetical protein ; {2} AT2G37540.1 ; {2} Cre08.g380550.t1.1 ; {2} Cre08.g380550.t1.2 ; {2} NAD(P)-binding Rossmann-fold superfamily protein ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC32B . * Called family CzOrth_5.2-3_07342: ChrZof Cz08g00190.t1@, CocSub 39153.2.0.227, MonNeg MNEG_2107; information: {1} hypothetical protein ; {2} AT1G76570.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll a/b binding protein of photosystem I, type III ; {2} Cre11.g467573.t1.1 ; {2} Cre18.g749750.t1.1 ; {2} Cre18.g749750.t1.2 ; {3} LHC13 ; {3} LHC Proteins Putatively Associated with PSII . * Called family CzOrth_5.2-3_07530: AraTha AT4G14690.1 AT3G22840.1&, ChlRei Cre08.g384650.t1.2.v5.5, ChrZof Cz08g00120.t1@& Cz14g24190.t1@&, CocSub 63786.2.0.227 56188.2.0.227& 60029.2.0.227&; information: {1} Chlorophyll A-B binding family protein ; {1} Chlorophyll A-B binding family protein ; {1} ELIP1 ; {1} ELIP2 ; {2} AT3G22840.1 ; {2} AT3G22840.1 ; {2} AT4G14690.1 ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Chlorophyll A-B binding family protein ; {2} Cre02.g130500.t1.1 ; {2} Cre02.g130500.t1.1 ; {2} Cre02.g130500.t1.2 ; {2} Cre02.g130500.t1.2 ; {2} Cre08.g384650.t1.1 ; {2} Cre09.g394325.t1.1 ; {2} Cre09.g394325.t1.1 ; {2} Early light-inducible protein ; {2} Early light-inducible protein ; {2} ELIP2 ; {2} ELIP,ELIP1 ; {2} ELIP,ELIP1 ; {3} CBR ; {3} Early Light-Induced Protein Homolog ; {3} ELIP10 ; {3} ELIP3 . * Called family CzOrth_5.2-3_07987: ChlRei Cre10.g426292.t1.1.v5.5, ChrZof Cz01g21060.t1@; information: {2} AT2G36580.1 ; {2} Pyruvate kinase family protein ; {3} PYK2 ; {3} Pyruvate Kinase . * Called family CzOrth_5.2-3_08034: ChlRei Cre12.g490650.t1.2.v5.5, ChrZof Cz02g19150.t1@; information: {2} AT5G16620.1 ; {2} ATTIC40,PDE120,TIC40 ; {2} Cre12.g490650.t1.1 ; {2} hydroxyproline-rich glycoprotein family protein ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC40 . * Called family CzOrth_5.2-3_08064: ChlRei Cre09.g395050.t1.1.v5.5, ChrZof Cz03g11170.t1@; information: {3} chloroplast movement related ; {3} CHUP1 . * Called family CzOrth_5.2-3_08065: ChlRei Cre14.g615950.t1.1.v5.5, ChrZof Cz03g12130.t1@; information: {2} AT3G54540.1 ; {2} ATGCN4,GCN4 ; {2} general control non-repressible 4 ; {3} EF3 ; {3} elongation factor abc-type . * Called family CzOrth_5.2-3_08169: ChlRei Cre12.g528850.t1.1.v5.5, ChrZof Cz05g17150.t1@, MonNeg MNEG_4616&; information: {1} DLC3 ; {1} Dynein light chain, flagellar outer arm ; {1} Flagellar outer dynein arm 16 kDa light chain, LC3 ; {2} AT3G08710.1 ; {2} ATH9,TH9,TRX H9 ; {2} thioredoxin H-type 9 ; {3} thioredoxin domain containing 6 ; {3} TRXD62 . * Called family CzOrth_5.2-3_08243: ChlRei Cre14.g626750.t1.2.v5.5, ChrZof Cz07g30110.t1@; information: {2} AT4G14690.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre14.g626750.t1.1 ; {2} ELIP2 ; {3} Early Light-Induced Protein Homolog ; {3} ELIP2 . * Called family CzOrth_5.2-3_08411: ChlRei Cre04.g217945.t1.1.v5.5 Cre04.g217924.t1.1.v5.5& Cre04.g217939.t1.1.v5.5&, ChrZof Cz13g01140.t1@, MonNeg MNEG_3078&; information: {1} FAD5C ; {1} Fatty acid desaturase ; {1} Fatty acid desaturase ; {1} stearoyl-CoA desaturase (delta-9desaturase) ; {2} ADS3,FAD5,FADB,JB67 ; {2} ADS3,FAD5,FADB,JB67 ; {2} AT3G15850.1 ; {2} AT3G15850.1 ; {2} Cre03.g209600.t1.1 ; {2} Cre03.g209600.t1.2 ; {2} Cre03.g209800.t1.1 ; {2} fatty acid desaturase 5 ; {2} fatty acid desaturase 5 ; {3} FAD5C ; {3} Fatty Acid Desaturase, delta-9 . * Called family CzOrth_5.2-3_08423: ChlRei Cre04.g221550.t1.2.v5.5, ChrZof Cz13g15030.t1@; information: {2} AT2G32640.1 ; {2} Cre04.g221550.t1.1 ; {2} Lycopene beta/epsilon cyclase protein ; {3} Chlorophycean Violaxanthin De-Epoxidase ; {3} CVDE . * Called family CzOrth_5.2-3_08588: ChrZof Cz01g42110.t1@ Cz17g00090.t1@& UNPLg00453.t1& UNPLg00454.t1& UNPLg00451.t1& UNPLg00452.t1&, CocSub 41411.2.0.227; information: {2} AT4G14690.1 ; {2} Chlorophyll A-B binding family protein ; {2} Cre02.g130500.t1.1 ; {2} Cre02.g130500.t1.2 ; {2} Cre09.g394325.t1.1 ; {2} Early light-inducible protein ; {2} ELIP2 ; {3} Early Light-Induced Protein Homolog ; {3} Early Light-Induced Protein Homolog ; {3} ELIP4 ; {3} ELIP7 . * Called family CzOrth_5.2-3_08635: ChrZof Cz09g10030.t1@, CocSub 54573.2.0.227; information: {2} AT4G16800.1 ; {2} ATP-dependent caseinolytic (Clp) protease/crotonase family protein ; {2} Cre02.g091850.t1.1 ; {2} Cre02.g091850.t1.2 ; {3} ECH2 ; {3} Enoyl-CoA ACP Hydratase . * Called family CzOrth_5.2-3_08641: ChrZof Cz10g17090.t1@ Cz03g26070.t1@&, CocSub 27439.2.0.227; information: {2} AT3G11670.1 ; {2} Cre13.g583600.t1.1 ; {2} Cre13.g583600.t1.2 ; {2} DGD1 ; {2} Galactolipid galactosyltransferase ; {2} UDP-Glycosyltransferase superfamily protein ; {3} DGD1 ; {3} DGD2 ; {3} DGDG syntase 2 chloroplastic ; {3} DGDG synthase . * Called family CzOrth_5.2-3_08818: ChrZof Cz01g41090.t1@ Cz01g33050.t1& Cz09g20210.t1&, MonNeg MNEG_7742; information: {1} hypothetical protein ; {3} MAPK ; {3} yoda-like . * Called family CzOrth_5.2-3_08861: ChrZof Cz02g27090.t1@, MonNeg MNEG_3597; information: {1} hypothetical protein ; {3} CITRX2 ; {3} thioredoxin . * Called family CzOrth_5.2-3_08940: ChrZof Cz03g36260.t1@, MonNeg MNEG_10384 MNEG_10674&; information: {1} enoyl-CoA hydratase ; {1} enoyl-CoA hydratase ; {3} ECH1 ; {3} Enoyl-CoA ACP Hydratase . * Called family CzOrth_5.2-3_09009: ChrZof Cz05g04030.t1@, MonNeg MNEG_8593; information: {1} hypothetical protein ; {3} CURT1 ; {3} Curvature of the Thylakoid Protein . * Called family CzOrth_5.2-3_09055: ChrZof Cz06g00170.t1@ Cz16g03140.t1@& Cz16g03150.t1&, MonNeg MNEG_9257 MNEG_11416&; information: {1} hypothetical protein ; {1} stearoyl-CoA desaturase (delta-9desaturase) ; {3} FAD5A1 ; {3} FAD5A3 ; {3} Fatty Acid Desaturase, delta-9 ; {3} Fatty Acid Desaturase, delta-9 . * Called family CzOrth_5.2-3_09084: ChrZof Cz06g21110.t1@, MonNeg MNEG_7459; information: {1} 3-deoxy-7-phosphoheptulonate synthase ; {3} DHS1 ; {3} Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic . * Called family CzOrth_5.2-3_09172: ChrZof Cz08g09050.t1@, MonNeg MNEG_14026; information: {1} pheophorbide a oxygenase ; {3} PAO1 ; {3} Pheophorbide a Oxygenase . * Called family CzOrth_5.2-3_09179: ChrZof Cz08g14220.t1@ Cz11g21100.t1@&, MonNeg MNEG_4518; information: {1} hypothetical protein ; {3} DGAT2A ; {3} DGAT2B ; {3} Diacylglycerol Acyltransferase Type 2 ; {3} Diacylglycerol Acyltransferase Type 2 . * Called family CzOrth_5.2-3_09330: ChrZof Cz12g02100.t1@ Cz03g04040.t1@& Cz10g12190.t1& Cz18g09190.t1@& Cz18g09230.t1@&, MonNeg MNEG_11333 MNEG_10025& MNEG_14135&; information: {1} 3-ketoacyl-CoA synthase 10 ; {1} 3-ketoacyl-CoA synthase 5 ; {1} 3-ketoacyl-CoA synthase 6 ; {3} LCKAS1 ; {3} LCKAS5 ; {3} LCKAS6 ; {3} LCKAS7 ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase . * Called family CzOrth_5.2-3_09376: ChrZof Cz13g05060.t1@ Cz13g05050.t1@& Cz13g05070.t1&, MonNeg MNEG_14110 MNEG_7077& MNEG_9803&; information: {1} 3-ketoacyl-CoA synthase 11 ; {1} 3-ketoacyl-CoA synthase 17 ; {1} 3-ketoacyl-CoA synthase 19 ; {3} LCKAS14 ; {3} LCKAS8 ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase ; {3} Very-Long-Chain Beta-Ketoacyl ACP Synthase . * Called family CzOrth_5.2-3_09461: ChrZof Cz16g01180.t1 Cz10g08280.t1@&, MonNeg MNEG_2046 MNEG_1434&; information: {1} hypothetical protein ; {1} hypothetical protein ; {3} UROD1 ; {3} Uroporphyrinogen III Decarboxylase . * Called family CzOrth_5.2-3_09479: ChrZof Cz16g11150.t1@, MonNeg MNEG_11360 MNEG_8972&; information: {1} hypothetical protein ; {1} hypothetical protein ; {3} Chloroplast Inner Membrane Translocase ; {3} TIC21B . * Called family CzOrth_5.2-3_09557: ChlRei Cre10.g453600.t2.1.v5.5&, ChrZof UNPLg00012.t1@, MonNeg MNEG_2689; information: {1} inoleoyl-CoA desaturase ; {2} AT1G77760.1 ; {2} GNR1,NIA1,NR1 ; {2} nitrate reductase 1 ; {3} FAD3-1 ; {3} Fatty Acid Desaturase, delta-6 . * Called family CzOrth_5.2-3_12635: ChrZof Cz04g02200.t1@; information: {3} Photosystem I Subunit G ; {3} PSAG1 . * Called family CzOrth_5.2-3_14600: ChrZof Cz09g29200.t1@; information: {3} PGP3 ; {3} Phosphatidylglycerophosphate Synthase . * Called family CzOrth_5.2-3_14689: ChrZof Cz10g07200.t1@; information: {3} PDAT ; {3} Phospholipid : Diacylglycerol Acyltransferase . * Called family CzOrth_5.2-3_15220: ChrZof Cz12g01050.t1@; information: {3} UROD2 ; {3} Uroporphyrinogen III Decarboxylase . * Called family CzOrth_5.2-3_15457: ChrZof Cz12g26270.t1@; information: {3} PAC ; {3} Pale Cress Etiolation Regulator .