Table 7. Genes with positive evolution in the lineage to S288
ORF |
Gene |
Gene Ontology biological process |
YAL002W |
VPS8 |
Late endosome to vacuole transport |
YAL005C |
SSA1 |
Protein folding |
YAL026C |
DRS2 |
Processing of 20S pre-rRNA |
YAL028W |
FRT2 |
Response to stress |
YAL044C |
GCV3 |
One-carbon compound metabolism |
YAL053W |
|
Biological process unknown |
YBL004W |
UTP20 |
Processing of 20S pre-rRNA |
YBL068W |
PRS4 |
Histidine biosynthesis |
YBL075C |
SSA3 |
Response to stress |
YBL106C |
SRO77 |
Exocytosis |
YBR043C |
QDR3 |
Biological process unknown |
YBR202W |
CDC47 |
DNA replication initiation |
YBR203W |
COS111 |
Signal transduction |
YBR207W |
FTH1 |
Endocytosis |
YBR241C |
|
Biological process unknown |
YBR267W |
REI1 |
Bud growth |
YBR273C |
UBX7 |
Biological process unknown |
YBR287W |
ZSP1 |
Biological process unknown |
YCL063W |
VAC17 |
Vacuole inheritance |
YCR023C |
|
Biological process unknown |
YCR057C |
PWP2 |
Establishment of cell polarity (sensu Fungi) |
YDL028C |
MPS1 |
Mitotic spindle checkpoint |
YDL031W |
DBP10 |
35S primary transcript processing |
YDL045C |
FAD1 |
FAD biosynthesis |
YDL065C |
PEX19 |
Peroxisome organization and biogenesis |
YDL072C |
YET3 |
Biological process unknown |
YDL087C |
LUC7 |
mRNA splice site selection |
YDL169C |
UGX2 |
Biological process unknown |
YDL243C |
AAD4 |
Aldehyde metabolism |
YDR061W |
|
Biological process unknown |
YDR062W |
LCB2 |
Sphingolipid biosynthesis |
YDR074W |
TPS2 |
Response to stress |
YDR090C |
|
Biological process unknown |
YDR118W |
APC4 |
Ubiquitin-dependent protein catabolism |
YDR172W |
SUP35 |
mRNA catabolism, deadenylylation-dependent |
YDR191W |
HST4 |
Chromatin silencing at telomere |
YDR208W |
MSS4 |
Sporulation (sensu Fungi) |
YDR402C |
DIT2 |
Spore wall assembly (sensu Fungi) |
YDR421W |
ARO80 |
Positive regulation of transcription from Pol II promoter |
YDR516C |
EMI2 |
Sporulation (sensu Fungi) |
YER002W |
NOP16 |
Ribosomal large subunit biogenesis |
YER080W |
FMP29 |
Biological process unknown |
YER103W |
SSA4 |
Response to stress |
YFL026W |
STE2 |
Response to pheromone in conjugation with cellular fusion |
YFR029W |
PTR3 |
Sensory perception of chemical stimulus |
YFR039C |
|
Biological process unknown |
YGL027C |
CWH41 |
Cell wall organization and biogenesis |
YGL056C |
SDS23 |
Biological process unknown |
YGL059W |
|
Biological process unknown |
YGL062W |
PYC1 |
Gluconeogenesis |
YGL063W |
PUS2 |
tRNA modification |
YGL071W |
RCS1 |
Positive regulation of transcription from Pol II promoter |
YGL073W |
HSF1 |
Regulation of transcription from Pol II promoter |
YGL114W |
|
Transport |
YGL116W |
CDC20 |
Ubiquitin-dependent protein catabolism |
YGL131C |
SNT2 |
Biological process unknown |
YGL141W |
HUL5 |
Protein monoubiquitination |
YGL172W |
NUP49 |
mRNA-nucleus export |
YGL197W |
MDS3 |
Sporulation |
YGL206C |
CHC1 |
Vesicle-mediated transport |
YGL213C |
SKI8 |
Protein complex assembly |
YGR070W |
ROM1 |
Cell wall organization and biogenesis |
YGR092W |
DBF2 |
Protein amino acid phosphorylation |
YGR116W |
SPT6 |
Regulation of transcription, DNA-dependent |
YGR169C |
PUS6 |
tRNA modification |
YGR172C |
YIP1 |
Vesicle-mediated transport |
YGR237C |
|
Biological process unknown |
YGR246C |
BRF1 |
Transcription initiation from Pol III promoter |
YGR254W |
ENO1 |
Gluconeogenesis |
YHL031C |
GOS1 |
Intra-Golgi transport |
YHR037W |
PUT2 |
Glutamate biosynthesis |
YHR137W |
ARO9 |
Aromatic amino acid family metabolism |
YHR179W |
OYE2 |
Biological process unknown |
YIL017C |
VID28 |
Negative regulation of gluconeogenesis |
YIL074C |
SER33 |
Serine family amino acid biosynthesis |
YIL114C |
POR2 |
Ion transport |
YIL123W |
SIM1 |
Microtubule cytoskeleton organization and biogenesis |
YJL130C |
URA2 |
Pyrimidine base biosynthesis |
YJL151C |
SNA3 |
Biological process unknown |
YJL164C |
TPK1 |
Protein amino acid phosphorylation |
YJL168C |
SET2 |
Regulation of transcription, DNA-dependent |
YJR040W |
GEF1 |
Cation homeostasis |
YJR107W |
|
Biological process unknown |
YJR124C |
|
Biological process unknown |
YJR147W |
HMS2 |
Pseudohyphal growth |
YKL034W |
TUL1 |
Protein transport |
YKL054C |
DEF1 |
Ubiquitin-dependent protein catabolism |
YKL068W |
NUP100 |
mRNA-nucleus export |
YKL129C |
MYO3 |
Cell wall organization and biogenesis |
YKL133C |
|
Biological process unknown |
YLL028W |
TPO1 |
Polyamine transport |
YLL035W |
GRC3 |
rRNA processing |
YLR165C |
PUS5 |
rRNA modification |
YLR196W |
PWP1 |
Biological process unknown |
YLR369W |
SSQ1 |
DNA-dependent DNA replication |
YLR383W |
RHC18 |
DNA repair |
YLR392C |
|
Biological process unknown |
YML023C |
|
DNA repair |
YML097C |
VPS9 |
Protein-vacuolar targeting |
YML110C |
COQ5 |
Aerobic respiration |
YML111W |
BUL2 |
Protein monoubiquitination |
YML119W |
|
Biological process unknown |
YMR019W |
STB4 |
Biological process unknown |
YMR077C |
VPS20 |
Late endosome to vacuole transport |
YMR124W |
|
Biological process unknown |
YMR205C |
PFK2 |
Glycolysis |
YMR215W |
GAS3 |
Biological process unknown |
YMR302C |
PRP12 |
rRNA processing |
YMR307W |
GAS1 |
Cell wall organization and biogenesis |
YNL012W |
SPO1 |
Meiosis |
YNL055C |
POR1 |
Aerobic respiration |
YNL058C |
|
Biological process unknown |
YNL064C |
YDJ1 |
Protein-mitochondrial targeting |
YNL074C |
MLF3 |
Response to drug |
YNL085W |
MKT1 |
Viral life cycle |
YNL172W |
APC1 |
Ubiquitin-dependent protein catabolism |
YNL209W |
SSB2 |
Protein biosynthesis |
YNL243W |
SLA2 |
Cell wall organization and biogenesis |
YNR021W |
|
Biological process unknown |
YOL054W |
PSH1 |
RNA elongation from Pol II promoter |
YOL058W |
ARG1 |
Arginine biosynthesis |
YOL067C |
RTG1 |
Transcription initiation from Pol II promoter |
YOL089C |
HAL9 |
Transcription initiation from Pol II promoter |
YOL145C |
CTR9 |
Transcription from Pol II promoter |
YOR150W |
MRPL23 |
Protein biosynthesis |
YOR208W |
PTP2 |
Signal transduction during conjugation with cellular fusion |
YOR209C |
NPT1 |
Chromatin silencing at telomere |
YOR237W |
HES1 |
Steroid biosynthesis |
YOR306C |
MCH5 |
Transport |
YOR370C |
MRS6 |
Intracellular protein transport |
YPL054W |
LEE1 |
Biological process unknown |
YPL100W |
ATG21 |
Vacuolar protein processing or maturation |
YPL118W |
MRP51 |
Protein biosynthesis |
YPL126W |
NAN1 |
Processing of 20S pre-rRNA |
YPL158C |
|
Biological process unknown |
YPL178W |
CBC2 |
Nuclear mRNA splicing, via spliceosome |
YPR086W |
SUA7 |
Transcription initiation from Pol II promoter |
YPR156C |
TPO3 |
Polyamine transport |