Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics

Supplemental Data

• Supplementary file 1 (.xlsx, 197 KB) - Reference genome database
• Supplementary file 2 (.xlsx, 12.6 MB) - All identified peptides, E-values, and FPR per sample
• Supplementary file 3 (.txt, 6 KB) - X!Tandem settings (XML)
• Supplementary file 4 (.xlsx, 10 KB) - In silico results
• Supplementary file 5 (.xlsx, 116 KB) - Results from leave-one-out evaluation
• Supplementary file 6 (.docx, 171 KB) - Mixed-species samples
• Supplementary file 7 (.docx, 109 KB) - Large vs small protein database
• Supplementary file 8 (.xlsx, 9 KB) - Antibiotic resistance profile analysis of E. coli strain CCUG 62462
• Supplementary file 9 (.txt, 3 KB) - Detailed results from antibiotic resistance detection
• Supplementary file 10 (.xlsx, 41 KB) - Example comparison of experimental and in silico-based correction