==== Differential expression using DESeq for pol2chipseq-snRNA/pol2chipseq-snRNA.diffexpr-snRNA
parameters of estimateDispersions in diffexpr_DESeq.R: method=pooled-CR, sharingMode=fit-only, fitType=parametric
Total: 13828 regions
differential expression thresholds: significance p-value <= 5.0e-02 and fold change >= 2.0 and minimum number of reads in the genomic region in at least some dataset 1

== Statistics
--- Differentially overexpressed in wt: 4
--- Differentially overexpressed in cuff: 0
--- Not differentially expressed: 27
--- No data for both conditions: 0

== Results
--- Differentially overexpressed in wt: 4
name	wt	cuff	log2(fold)	p-value
snRNA:U2:38ABb-RA	424.1	1.3	-8.4	0e+00
snRNA:U5:38ABa-RA	812.8	103.8	-3.0	6e-12
snRNA:U2:34ABc-RA	6268.3	2587.9	-1.3	5e-09
snRNA:U2:38ABa-RA	1074.3	454.8	-1.2	5e-03

--- Differentially overexpressed in cuff: 0

--- Not differentially expressed: 27
name	wt	cuff	log2(fold)	p-value
snRNA:U3:22A-RA	24.4	96.5	2.0	4e-01
snRNA:U6:96Aa-RA	41.6	117.0	1.5	6e-01
snRNA:U6:96Ab-RA	40.5	107.1	1.4	5e-01
snRNA:U6:96Ac-RA	177.3	346.8	1.0	6e-01
snRNA:U5:35D-RA	128.7	245.1	0.9	5e-01
snRNA:7SK-RA	736.8	742.3	0.0	1e+00
snRNA:U6atac:29B-RA	80.7	76.6	-0.1	1e+00
snRNA:U1:82Eb-RA	18155.0	17000.7	-0.1	1e+00
snRNA:U5:23D-RA	6146.5	5642.5	-0.1	8e-01
snRNA:U4:39B-RA	26638.3	23224.8	-0.2	7e-01
snRNA:U1:95Ca-RA	24783.6	20684.0	-0.3	5e-01
snRNA:U1:95Cb-RA	3520.0	2836.9	-0.3	5e-01
snRNA:U2:34ABb-RA	17301.6	13929.5	-0.3	5e-01
snRNA:U5:63BC-RA	11763.7	9402.1	-0.3	4e-01
snRNA:U1:21D-RA	14242.9	11192.2	-0.3	3e-01
snRNA:U4:25F-RA	67.5	53.0	-0.3	1e+00
snRNA:U12:73B-RA	14966.9	11698.0	-0.4	2e-01
snRNA:U4atac:82E-RA	2480.6	1901.9	-0.4	4e-01
snRNA:U2:14B-RA	3985.0	3029.3	-0.4	3e-01
snRNA:U11-RA	14356.3	10237.4	-0.5	4e-02
snRNA:U5:34A-RA	4754.0	3306.1	-0.5	1e-01
snRNA:U1:95Cc-RA	3077.0	2066.7	-0.6	1e-01
snRNA:U2:34ABa-RA	3918.8	2618.9	-0.6	1e-01
snRNA:U7-RA	3131.6	2085.9	-0.6	4e-02
snRNA:U5:38ABb-RA	853.9	552.4	-0.6	4e-01
snRNA:U5:14B-RA	2981.5	1917.8	-0.6	2e-01
snRNA:U4:38AB-RA	5470.9	2839.4	-0.9	7e-04

--- No data for both conditions: 0