Table 5. List of identified weak SRC-3 binding sites
Binding site ID |
Nearest gene, mRNA, EST, or genomic location |
GenBank accession no. |
Distance to gene start |
Cluster Information |
ERE† |
|||
No. of Tags |
No. of Distinct Tags |
Length, nt |
Class * |
|||||
Weak binding sites |
||||||||
RGS8 |
regulator of G-protein signaling 8 |
NM033345 |
-13845 |
2 |
2 |
218 |
A |
ERE |
C20orf4 |
chromosome 20 open reading frame 4 |
NM015511 |
765, 912 |
2 |
2 |
190 |
A |
(ERE) |
AI434476 |
IMAGE:2132662 |
(± )1842 |
7 |
1 |
45 |
B |
||
AL709692 |
clone DKFZp686D0463 |
-1154 |
4 |
1 |
47 |
B |
||
GALNT11, BC059377 |
N-acetylgalactosaminyltransferase 11 |
NM022087 |
50730, 1523 |
4 |
1 |
44 |
B |
|
BC038557 |
IMAGE:3451831 |
425 |
3 |
1 |
44 |
B |
(ERE) |
|
AL833283 (DNMBP) |
DKFZp451J178 (colinear with dynamin binding prot.) |
1096 |
3 |
1 |
44 |
B |
||
DKFZ-p434L142 |
hypothetical protein DKFZp434L142 |
NM016613 |
-1150 |
2 |
1 |
46 |
B |
2 ERE |
NRAS |
neuroblastoma RAS viral (v-ras) oncogene homolog |
NM002524 |
-978 |
2 |
1 |
47 |
B |
2 (ERE) |
BANP |
BTG3 associated nuclear protein |
NM017869 |
-6399 |
1 |
1 |
48 |
NA |
4 ERE |
IGFBP2 |
insulin-like growth factor binding protein 2 |
NM000597 |
-6676 |
1 |
1 |
54 |
NA |
2 ERE |
*Class A clusters consist of two or more distinct tags with different or only partially overlapping sequences; Class B clusters consist of two or more identical or almost identical tags. Class B cluster could arise during amplification steps in the cloning protocol and may represent single alignments.
†
ERE, estrogen-response element within 500 bp of the nearest tag; (ERE), ERE within 500-1,000 bp of the nearest tag.