Group

Strain

Size

CDSs

identity*

genes^†

Enterics

1.E. coli O157:H7 Sakai

5.50

5,361

2.E. coli 0157:H7 EDL933

5.60

5,324

99.7¹,97.4³,97.3⁵

98.6¹,90.2³,89.8⁵

3.E. coli K12

4.60

4,279

97.2¹,97.9⁵

72.9¹,88.1⁵

4.E. coli CFT073

5.23

5,379

95.9¹,96.4³,96.5⁵

75.5¹,86.8³,88.8⁵

5.S. flexneri 2a 2457

4.60

4,068

96.5¹,97.5³

69.6¹,82.6³

6.S. flexneri 2a 301

4.61

4,180

96.4¹,97.5³,99.8⁵

69.5¹,82.3³,99⁵

7.S. typhimurium LT2

4.95

4,553

79.9¹,80.7⁵

59.7¹,68.6⁵

8.S. enterica ser. Typhi Ty2

4.79

4,323

80.2¹,

57¹,

9.S. enterica ser. Typhi

4.80

4,767

80.2¹,99.9⁸

57.7¹,99.6⁸

10.S. bongori 12419

4.46

NA

89.5⁸

78.8⁸

11.Y. pestis Kim

4.60

4,090

71.5¹,71.6⁵

37¹,45.1⁵

12.Y. pestis CO92

4.65

4,083

71.5¹,99.9¹¹

37.2¹,99.7¹¹

13.Y. pestis Mediaevails

4.6

4,142

99.88¹¹

98.56¹¹

14.Y. enterocolitica

4.68

NA

82.1¹

69.3¹

15.E. carotovora

5.06

4,472

72.1¹

38.4¹

monas

1.P putida KT2440

6.18

5,350

2.P aeruginosa PA01

6.30

5,567

75.1

56.2

3.P syringae DC3000

6.40

5,471

75.4

50.7

Neisseria

1.N. meningitidis MC58

2.27

2,079

96.7³

91.2³

2.N. meningitidis FAM

2.20

NA

97¹,97.1³

90.8¹,90.2³

3.N. meningitidis Z2491

2.18

2,065

96.9¹

90.2¹

4.N. gonorrhoeae FA1090

2.15

NA

94.3¹,94.3³

82.4¹,82.7³

Bord- etella

1.B pertussis Tohama I

4.09

3,447

96.6²

72.1²

2.B. bronchiceptica RB50

5.35

4,994

98.4¹

91¹

3.B. parapertussis

4.77

4,185

98.2¹,98.3²

87.9¹,87.2²

Bacilli

1.B cereus ATCC 14579

5.41

5,255

91.43³

84.54³

2.B cereus 10987

5.22

5,603

91¹,94.07³

83¹,82.83³

3.B anthracis Ames

5.23

5,311

91.36¹

84.85¹

4.B cereus ZK

5.3

5,134

91.34¹,97.05³

84.05¹,90.6³

Myco- bacteria

1.M. tuberculosis CDC1551

4.40

4,187

2.M. tuberculosis h37Rv

4.40

3,927

99.7

99.5

3.M. bovis

4.35

3,920

99.4

98.3

4.M. avium

5.48

NA

79.1

62.6

Strep- tococci

1.S. pyogenes SSI-1

1.89

1,861

97.9²

92.7²

2.S. pyogenes MGAS8232

1.90

1,845

97.8¹

92.5¹

3.S. pyogenes MGAS315

1.90

1,865

99.9¹,97.9²

100¹,92.7²

4.S. pyogenes M1 GAS

1.85

1,697

98¹,97.9²,71.3⁷

86.8¹,89.7²,38.5⁷

5.S. agalactiae 2603

2.20

2,124

74.5¹,74.4²

56.2¹,56.5²

6.S. agalactiae NEM

2.21

2,094

98.5⁵

87.5⁵

7.S. pneumoniae r6

2.03

2,043

8.S. pneumoniae TIGR4

2.20

2,094

71.4¹,71.3²,98.4⁷

41.3¹,42.1²,95.9⁷

9.S. mutans

2.03

1,920

72⁵

46.8⁵

Staph-ylococci

1.S aureus Mu50

2.90

2,748

98.2³

93.5³

2.S aureus N315

2.81

2,625

99.8¹,98.3³

94.8¹,93.3³

3.S aureus MW2

2.80

2,632

98.2¹

90.4¹

4.S aureus MSSR252

2.80

2,579

98.2¹,99.7³

89.7¹,98.4³

5.S aureus MRSA476

2.90

2,656

97.1¹,97³

91.6¹,93.9³

6.S. epidermitidis ATCC12228

2.50

2,419

7.S. epidermitidis RP62A

2.65

NA

75.9¹,75.3³,98.9⁶

66.4¹,66.8³,94.6⁶

Others

1.X. campestris ATCC33913

5.08

4,181

2.X. axonopodis pv. Citri 301

5.17

4,312

84.6¹

82.9¹

3.X. fastidiosa temecula

2.52

2,036

4.X. fastidiosa 9a5c

2.68

2,832

95.7³

95.8³

5.Vibrio vulnificus CMCP6

5.13

4,514

6.Vibrio vulnificus YJ016

5.21

5,024

97.91⁵

89.5⁵

7.H. pylori J99

1.64

1,491

8.H. pylori 26695

1.66

1,576

95⁷

93.3⁷

9.B. melitensis 16M

3.30

3,198

10.B suis 1330

3.28

3,264

99.1⁹

98.4⁹

11.R. conorri

1.27

1,374

12.R. prowazekii

1.10

835

87.7¹¹

59.4¹¹

13.C perfrigens 13

3.1

2,723

14.C perfrigens ATCC13124

3.26

NA

98.1¹³

90.5¹³

15.T. whipplei twist

0.93

808

16.T. whipplei TW08/27

0.93

783

99.2¹⁵

99.3¹⁵

17. B. pseudomallei

7.25

5,729

18. B. mallei

5.84

4,764

98.63¹⁷

79.11¹⁷

19. L.pneumophila Philadelphia

3.4

2,942

20. L.pneumophila Paris

3.64

3,166

96.63¹⁹

91.64¹⁹

21. L.pneumophila Lens

3.41

2,934

96.46¹⁹

88.72¹⁹