Table 4. Genes included in the larger subnetworks obtained by analysis of gene-expression data sets for D gdh1, D grr1, and carbon-sources

D gdh1

D grr1

Carbon source

HXK1 PMP2 VHT1 AGP3 PHO84 TDH1 AAC3 ORT1 CAR1 MSR1 PET9 DIC1 SFC1 YEL047C FLX1 YML082W MEP3 DUR1 MEP2 DAL3 MEP1 URA8 HEM3 GDH3 YEL041W IDH1 PUT1 UTR1 KGD1 ALD4 MET13 MAE1 MET12 TRR2 ARG5 ARG8 AAT1 LYS9 ADE3 QNS1 SRT1 UGP1 RAM1 IPP1 NPT1 MSK1 LSC1 LEU4 ILV3 CDS1 HTS1 HIP1 HNM1 CKI1 MET3 HXK2 HXT5 SUC2 GAL2 HXT14 HXT1 MAL32 EXG1 FKS1 BGL2 EXG2 GAL10 TPS3 CHS2 TPS1 YNK1 FOL2 YJL068C GPX2 URA1 HEM14 HEM15 SCS7 BNA1 CTT1 YJR078W VAP1 UGA4 HEM2 ITR1 LYP1 PUT4 BAP2 SAM1 MET1 ERG6 BIO3 SAH1 YJR105W THR1 PFK2 DED81 ASP1 GNP1 LCB1 PPT2 CIT2 HMG2 ALD6 IDP3 BAT2 GFA1 SER1 GDH1 CYS3 YIL167W TRP5 TKL1 ARO3 RIB5 FBP1 RHR2 GPD2 ADH5 GPD1 FDH1 HOM6 ZWF1 TRR1 ARA1 GND1 ERG4 NCP1 ERG9 TSC10 LCB4 ASN2 PFK1 APA2 HOR2 INM1 HIS2 PFK26 CYR1 DUT1 PCT1 ERG20 MUQ1 CPT1 PRS2 PRS1 PGM1 TSL1 PGI1 YGR043C ERG26 PDC5 PSD2 SOL2 SOL3 FUN63 YAR075W ADE17 SHM2 IMD3 PUR5 ENO2 ENO1 PCM1 DAL7 MLS1 YLR231C DYS1 NDI1 ADH3 SPE4 URA4 DPM1 PMT2 ILV2 PSD1 GCV2 ACO1 DAL2 DAL1 DAL4

GLK1 PMA1 THI7 DIP5 FEN2 YIL145C AAC3 YER053C TDH1 PET9 HXK1 HXT7 SUC2 HXT4 HXT6 HXK2 HXT5 MAL32 HXT3 YGR287C HXT2 NTH2 HXT16 STL1 HXT1 ADE4 COX10 PSA1 YGL245W AAC1 PFK2 QNS1 IDH1 ODC1 IDP2 ADE3 PFK1 FOL3 PGK1 THI20 CDC19 TRP3 ABZ1 GNP1 BPH1 ACS2 RIB1 ADE12 RHR2 GUT2 SDH3 SFC1 LSC2 ECM40 CIT1 CTP1 MAL31 YGL186C APT2 TRP4 PRS5 HIS1 PCK1 ARO3 ARO2 ARO7 FBP1 ARO4 ENO2 PYC1 YDR341C FAB1 ARG1 MVD1 ARG3 CAR1 FBP26 CPA2 ARO8 BAP3 FCY2 TAT2 BIO5 BIO2 HIP1 MUP1 MHT1 SPE3 DYS1 NDI1 ALD4 MAE1 PUT2 CYB2 RIP1 URA1 GPX1 HYR1 BNA1 SUR2 ALD6 GND1 LYS9 ARO9 LYS21 NAT1 MLS1 YFL030W YFR055W PNC1 ILV1 GDH2 HIS7 ADE6 KRS1 ADE1 MET22 TPS2 SAM1 GLC3 THR4 SER1 LYS1 MDH3 LEU2 PDC5 GAD1 ASN2 THR1 GUA1 DED81 ASP1 YMR293C GDH3 HOM2 GPH1 SER2 SHM2 ADE8 URA2 ASN1 URA5 DUT1 YNK1 KRE2 RNR1 GSC2 TPS1 CHS2 TSL1 URA6 XKS1 TKL2 PUS1 PGM2 INO1 PGI1 PMI40 FUR1 YJR105W GLN1 AAT2 LYS20 CAT2 CRC1 ACH1 ERG10 KGD1 MDH1 FUM1 OSM1 LSC1 YCR024C POT1 FOX2 SER33 ADH4 SER3 ADH5 GLT1 ADH1 YAR075W NDH1 IMD4 FUN63 PUR5 GSY1 GSY2 TRR1 ECM17 ERG3 ERG24 ERG25 ERG2 URA4 LEU1 MET6 HIS3 ICL1 SOL1 SOL4 SOL3 ACO1 YJL200C

GLK1 PMA2 HXK1 PMA1 PFK1 PRS5 FOL1 PCK1 GCV1 PNC1 YMR293C FMT1 DFR1 GND2 HOM2 PHO84 TDH1 GPD2 MDH2 DIC11 SFC1 FUM1 MLS1 YFL030W ICL1 PDC6 IDP3 GDH2 DIP5 GNP1 GFA1 HIS7 UGA1 HOM6 ERG24 NDH1 COQ3 COQ6 GND1 ERG5 PAN5 NCP1 YBR006W PRO2 ECM17 ERG9 ERG3 BNA1 YJR078W ERG11 CTA1 HYR1 ERG25 HMG1 NAT2 LYS20 SER1 AGP1 FEN2 MAL31 NHA1 HNM1 BPH1 SAM3 UGA4 ITR1 TAT1 AAT2 BAT2 BAP2 MHT1 SPE3 OPI3 MET6 CYS4 BIO2 CIT2 CAT2 AGP2 CRC1 ACS1 RAM1 COX10 MET22 ARO2 ARO7 TPS2 THR4 ADE1 YER053C LSC1 MSE1 PPA2 MSW1 INM1 GSH1 FAD1 FLX1 POX1 GUT2 FBA1 TPI1 GUT1 FAA2 PRO1 TOR1 HTS1 PIK1 YNK1 SEC59 PMT5 QRI1 CYR1 APT2 PRS2 FUR1 URA5 RNR1 KTR2 DPM1 PMT1 FKS1 FUN63 PDE2 YJR105W SAM1 ARO1 URK1 KRE2 FBP26 HIS2 RIB5 ADE6 MET14 DED81 THR1 HOM3 HIS4 ERG8 ACH1 GAL7 PGM1 RKI1 TKL2 TAL1 PIS1 IPT1 CHO2 YLR089C ARG8 IDH1 PSD1 ADH3 ALD5 PUT2 ACO1 DLD1 HMGS ERG2 ADH1 FDH1 NDH2 ECM31 SOL3 ATP1 ENO2 GPM3 HXT7 SUC2 HXT3 NTH2 HXT5 HXT2 HXT10 HXT8 MAL32 FSP2 YGR287C YJL216C