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{"sheet":"Table S1","index":0,"n_rows":298,"n_cols":2,"rows_kept":298,"cut":false,"hidden":false,"merged":[[0,0,0,11]]}
["Table S1. Sus scrofa mature miRNA average abundance (cpm) in the 174 F2 Duroc x Pietrain Michigan State University resource population pigs."]
[]
["microRNA","Abundance (cpm)"]
["ssc-miR-1",47162587.700000003]
["ssc-miR-133a-3p",10161912.619999999]
["ssc-miR-378",10123135.84]
["ssc-miR-206",8726177.2689999994]
["ssc-miR-10b",7520558.6629999997]
["ssc-let-7a",5504770.9970000004]
["ssc-miR-486",5149792.0369999995]
["ssc-miR-143-3p",5064748.9359999998]
["ssc-miR-26a",4680768.9730000002]
["ssc-let-7f",4034459.2510000002]
["ssc-miR-21",3624223.9419999998]
["ssc-let-7c",3468041.1320000002]
["ssc-miR-126-3p",2970101.432]
["ssc-miR-30a-5p",2653633.861]
["ssc-miR-30e-5p",2590472.236]
["ssc-miR-199b-3p",2380396.1749999998]
["ssc-miR-199a-3p",2380360.5980000002]
["ssc-miR-181a",2285322.1]
["ssc-miR-30d",2011553.6229999999]
["ssc-let-7g",1978503.06]
["ssc-miR-101",1603243.463]
["ssc-miR-16",1463299.767]
["ssc-miR-30c-5p",1424870.274]
["ssc-miR-27b-3p",1387666.2]
["ssc-miR-24-3p",1351920.5020000001]
["ssc-miR-374a-5p",1331161.8459999999]
["ssc-miR-22-3p",1264201.8459999999]
["ssc-miR-126-5p",1174639.085]
["ssc-miR-151-5p",1172222.6410000001]
["ssc-miR-125b",1058542.338]
["ssc-let-7i",1041043.474]
["ssc-miR-29a",971896.82739999995]
["ssc-miR-99a",967188.56700000004]
["ssc-miR-133b",932663.40330000001]
["ssc-miR-148a-3p",883013.31649999996]
["ssc-miR-378b-3p",879745.55850000004]
["ssc-miR-499-5p",724791.1054]
["ssc-miR-7134-3p",659559.02240000002]
["ssc-miR-10a-5p",638058.60600000003]
["ssc-miR-30b-5p",546502.92689999996]
["ssc-let-7d-5p",522958.99890000001]
["ssc-miR-320",515610.5025]
["ssc-miR-151-3p",506620.59330000001]
["ssc-miR-92a",492268.92379999999]
["ssc-miR-152",489671.2525]
["ssc-miR-100",479455.75030000001]
["ssc-miR-128",466876.92469999997]
["ssc-miR-29c",465305.4155]
["ssc-miR-181b",460376.31420000002]
["ssc-miR-125a",455293.57410000003]
["ssc-miR-98",429467.6385]
["ssc-miR-133a-5p",425661.83409999998]
["ssc-miR-15a",417213.45659999998]
["ssc-miR-186",399686.02610000002]
["ssc-miR-95",361601.96429999999]
["ssc-miR-425-5p",348369.20490000001]
["ssc-miR-340",341826.45360000001]
["ssc-miR-195",334599.35690000001]
["ssc-miR-199a-5p",322162.21529999998]
["ssc-miR-127",317168.62589999998]
["ssc-miR-1285",311180.8002]
["ssc-miR-532-5p",293571.65909999999]
["ssc-let-7e",289201.57160000002]
["ssc-miR-99b",280130.27490000002]
["ssc-miR-103",260887.6942]
["ssc-miR-451",256770.609]
["ssc-miR-140-3p",254890.58559999999]
["ssc-miR-423-3p",233417.77480000001]
["ssc-miR-199b-5p",221543.88200000001]
["ssc-miR-424-5p",217882.12419999999]
["ssc-miR-27a",215786.52410000001]
["ssc-miR-3613",202006.52989999999]
["ssc-miR-542-3p",198336.9841]
["ssc-miR-30e-3p",196285.64809999999]
["ssc-miR-22-5p",191248.7769]
["ssc-miR-369",182789.86869999999]
["ssc-miR-148b-3p",174152.3015]
["ssc-miR-23a",165064.1018]
["ssc-miR-19b",162904.1378]
["ssc-miR-196b-5p",157843.80549999999]
["ssc-miR-20a",145593.57829999999]
["ssc-miR-23b",144879.70740000001]
["ssc-miR-28-5p",142622.21429999999]
["ssc-miR-145-5p",141843.97270000001]
["ssc-miR-208b",136681.52050000001]
["ssc-miR-191",132214.07320000001]
["ssc-miR-142-3p",130958.53200000001]
["ssc-miR-450b-5p",130339.42750000001]
["ssc-miR-150",127688.6093]
["ssc-miR-190a",127652.213]
["ssc-miR-374a-3p",124918.29790000001]
["ssc-miR-196a",119646.19319999999]
["ssc-miR-146a-5p",112711.95239999999]
["ssc-miR-450c-5p",110911.2411]
["ssc-miR-885-5p",109251.77589999999]
["ssc-miR-122",107375.12330000001]
["ssc-miR-28-3p",105309.4565]
["ssc-miR-339-5p",92907.615940000003]
["ssc-miR-374b-5p",92294.771949999995]
["ssc-miR-361-5p",91081.905369999993]
["ssc-miR-30a-3p",90855.043969999999]
["ssc-miR-7",90770.953280000002]
["ssc-miR-423-5p",82623.180770000006]
["ssc-miR-365-3p",77226.459329999998]
["ssc-miR-339",74008.829159999994]
["ssc-miR-17-5p",72518.940289999999]
["ssc-miR-450a",71427.842420000001]
["ssc-miR-497",68005.740529999995]
["ssc-miR-328",65554.607650000005]
["ssc-miR-331-3p",65042.813679999999]
["ssc-miR-15b",63597.779909999997]
["ssc-miR-181c",61252.773679999998]
["ssc-miR-1468",60351.991970000003]
["ssc-let-7d-3p",58688.45001]
["ssc-miR-142-5p",58668.827859999998]
["ssc-miR-335",57064.508849999998]
["ssc-miR-146b",54435.800369999997]
["ssc-miR-4334-3p",53777.582459999998]
["ssc-miR-574",53343.462809999997]
["ssc-miR-362",52373.124539999997]
["ssc-miR-214",52054.336300000003]
["ssc-miR-107",51072.843520000002]
["ssc-miR-542-5p",50340.950530000002]
["ssc-miR-32",49485.556409999997]
["ssc-miR-34a",49316.961239999997]
["ssc-miR-29b",48590.500549999997]
["ssc-miR-708-5p",47530.357380000001]
["ssc-miR-145-3p",47272.389669999997]
["ssc-miR-140-5p",45464.557359999999]
["ssc-miR-7142-3p",44790.372060000002]
["ssc-miR-503",44659.105530000001]
["ssc-miR-342",42561.567230000001]
["ssc-miR-1307",40598.027670000003]
["ssc-miR-144",40481.659899999999]
["ssc-miR-19a",38070.615810000003]
["ssc-miR-155-5p",37924.148959999999]
["ssc-miR-338",36918.166559999998]
["ssc-miR-9843-3p",35405.355320000002]
["ssc-miR-1306-5p",35324.12743]
["ssc-miR-500",34269.270850000001]
["ssc-miR-7134-5p",34220.372000000003]
["ssc-miR-221-3p",33287.204319999997]
["ssc-miR-181d-5p",32138.436610000001]
["ssc-miR-1249",31785.36937]
["ssc-miR-769-5p",31615.382150000001]
["ssc-miR-136",29472.424599999998]
["ssc-miR-130a",27609.733629999999]
["ssc-miR-455-5p",25758.645039999999]
["ssc-miR-425-3p",25727.574540000001]
["ssc-miR-676-3p",25349.634239999999]
["ssc-miR-192",24985.45507]
["ssc-miR-24-2-5p",24430.212640000002]
["ssc-miR-218b",23537.03528]
["ssc-miR-218",23515.217919999999]
["ssc-miR-218-5p",23515.217919999999]
["ssc-miR-193a-3p",23311.59288]
["ssc-miR-361-3p",21573.235909999999]
["ssc-miR-2320-5p",21129.676800000001]
["ssc-miR-323",20665.84849]
["ssc-miR-450b-3p",20365.492730000002]
["ssc-miR-1296-5p",19883.950349999999]
["ssc-miR-885-3p",19354.647529999998]
["ssc-miR-499-3p",19070.600979999999]
["ssc-miR-532-3p",18685.728500000001]
["ssc-miR-382",18495.12947]
["ssc-miR-504",18365.621279999999]
["ssc-miR-185",18032.076519999999]
["ssc-miR-139-5p",17547.224149999998]
["ssc-miR-222",17369.94888]
["ssc-miR-149",17287.34577]
["ssc-miR-6782-3p",16813.410489999998]
["ssc-miR-505",16805.28458]
["ssc-miR-130b",16544.806410000001]
["ssc-miR-345-3p",16512.374810000001]
["ssc-miR-18a",16438.46789]
["ssc-miR-432-5p",15755.412270000001]
["ssc-miR-24-1-5p",15423.985489999999]
["ssc-miR-411",15096.479310000001]
["ssc-miR-194a",14627.158719999999]
["ssc-miR-299",14092.36033]
["ssc-miR-376a-3p",13503.273939999999]
["ssc-miR-758",13370.709720000001]
["ssc-miR-545-3p",12165.453299999999]
["ssc-miR-182",11792.77743]
["ssc-miR-424-3p",11713.95132]
["ssc-miR-204",11306.112010000001]
["ssc-miR-455-3p",11282.51066]
["ssc-miR-664-5p",11041.7757]
["ssc-miR-148a-5p",10877.82532]
["ssc-miR-193a-5p",10737.10053]
["ssc-miR-345-5p",9572.0884659999992]
["ssc-miR-545-5p",9563.8163280000008]
["ssc-miR-301",9508.9083890000002]
["ssc-miR-7137-5p",8820.2318919999998]
["ssc-miR-296-3p",8693.1144069999991]
["ssc-miR-935",8659.9969010000004]
["ssc-miR-664-3p",8500.3255950000002]
["ssc-miR-628",8458.6518460000007]
["ssc-miR-1343",8448.0234189999992]
["ssc-miR-370",7936.7515679999997]
["ssc-miR-324",7866.1268920000002]
["ssc-miR-493-5p",7505.5312350000004]
["ssc-miR-450c-3p",7375.2633809999998]
["ssc-miR-143-5p",7367.4926379999997]
["ssc-miR-489",6595.2148370000004]
["ssc-miR-17-3p",6179.4252479999996]
["ssc-miR-744",6095.5345989999996]
["ssc-miR-210",6044.7668649999996]
["ssc-miR-874",5917.9777729999996]
["ssc-miR-27b-5p",5864.3834960000004]
["ssc-miR-363",5729.123329]
["ssc-miR-148b-5p",5707.8237810000001]
["ssc-miR-421-3p",5624.0850899999996]
["ssc-miR-106a",5029.2726700000003]
["ssc-miR-9",4787.077268]
["ssc-miR-9-1",4787.077268]
["ssc-miR-9-2",4787.077268]
["ssc-miR-296-5p",4707.0057589999997]
["ssc-miR-331-5p",4692.767895]
["ssc-miR-491",4351.2029519999996]
["ssc-miR-10a-3p",4094.0916400000001]
["ssc-miR-20b",3873.2313060000001]
["ssc-miR-132",3848.2018360000002]
["ssc-miR-30b-3p",3846.6480029999998]
["ssc-miR-30c-3p",3605.20012]
["ssc-miR-190b",3523.0039149999998]
["ssc-miR-184",3522.4038970000001]
["ssc-miR-671-5p",3383.4469490000001]
["ssc-miR-1277",3367.8069930000001]
["ssc-miR-1306-3p",3217.0841420000002]
["ssc-miR-708-3p",2986.9013060000002]
["ssc-miR-205",2878.9508019999998]
["ssc-miR-4332",2821.02115]
["ssc-miR-326",2820.8380870000001]
["ssc-miR-92b-3p",2795.0572419999999]
["ssc-miR-376a-5p",2751.7744149999999]
["ssc-miR-374b-3p",2617.8119550000001]
["ssc-miR-30c-1-3p",2514.6046179999998]
["ssc-miR-18b",2388.2215169999999]
["ssc-miR-493-3p",2379.2780360000002]
["ssc-miR-769-3p",2210.1287510000002]
["ssc-miR-376c",2074.443953]
["ssc-miR-2320-3p",1737.9689000000001]
["ssc-miR-2483",1708.3917200000001]
["ssc-miR-9841-3p",1692.1246349999999]
["ssc-miR-1271",1667.0554979999999]
["ssc-miR-129a-5p",1597.4026019999999]
["ssc-miR-129b",1597.4026019999999]
["ssc-miR-339-3p",1478.8457370000001]
["ssc-miR-196b-3p",1306.133088]
["ssc-miR-202-5p",1261.3452990000001]
["ssc-miR-582",1199.5637650000001]
["ssc-miR-139-3p",1184.71146]
["ssc-miR-9851-3p",1047.6473370000001]
["ssc-miR-7137-3p",1010.4592689999999]
["ssc-miR-452",1007.5172690000001]
["ssc-miR-9860-5p",996.73413800000003]
["ssc-miR-183",782.20603019999999]
["ssc-miR-671-3p",719.80341920000001]
["ssc-miR-7135-3p",687.53032129999997]
["ssc-miR-129a-3p",685.92204500000003]
["ssc-miR-615",637.67465089999996]
["ssc-miR-381",630.23375620000002]
["ssc-miR-1839-5p",568.9206772]
["ssc-miR-490",557.11565089999999]
["ssc-miR-490-3p",557.11565089999999]
["ssc-miR-221-5p",542.74124289999997]
["ssc-miR-135",498.60850090000002]
["ssc-miR-4331",488.99536310000002]
["ssc-miR-138",473.78211709999999]
["ssc-miR-9785-5p",415.78959880000002]
["ssc-miR-652",398.01891569999998]
["ssc-miR-9810-3p",361.52477800000003]
["ssc-miR-429",296.56341789999999]
["ssc-miR-96-5p",296.29182429999997]
["ssc-miR-487b",290.72518789999998]
["ssc-miR-31",265.9758003]
["ssc-miR-217",261.36007130000002]
["ssc-miR-7138-5p",258.2928617]
["ssc-miR-2366",242.98854689999999]
["ssc-miR-2411",222.7347504]
["ssc-miR-212",214.9155074]
["ssc-miR-153",207.25705909999999]
["ssc-miR-7135-5p",206.44290989999999]
["ssc-miR-7139-5p",193.5633225]
["ssc-miR-216",191.2637139]
["ssc-miR-34c",155.2677018]
["ssc-miR-7144-5p",149.59355669999999]
["ssc-miR-137",131.30568009999999]
["ssc-miR-365-5p",126.0734009]
["ssc-miR-187",125.56456590000001]
["ssc-miR-7857-3p",111.6018389]
["ssc-miR-9820-5p",111.2421992]
["ssc-miR-219a",94.621454610000001]
["ssc-miR-551a",94.59588694]

{"sheet":"Table S2","index":1,"n_rows":46,"n_cols":6,"rows_kept":46,"cut":false,"hidden":false,"merged":[[0,0,0,2]]}
["Table S2. Candidate novel miRNA annotation information."]
[]
["Sequence ID","Nearby Ensembl Gene Accession*","Nearby Ensemble Transcript Accession*","Annotation Method","Nearby Ensembl Gene Description","Strand"]
["GL892871.2_43622","ENSSSCG00000022650","ENSSSCT00000024283.1","predicted","mir-26 skeleton-with-bp","+"]
["X_39130","ENSSSCG00000026234","ENSSSCT00000027955.1","predicted","mir-188 skeleton-with-bp","+"]
["3_7507","ENSSSCG00000030427","ENSSSCT00000032294.1","predicted","mir-590 skeleton-with-bp","+"]
["13_28851","ENSSSCG00000027835","ENSSSCT00000029616.1","predicted","mir-26 skeleton-with-bp (forward)","+"]
["13_28851","ENSSSCG00000027835","ENSSSCT00000029616.1","predicted","mir-26 skeleton-with-bp (forward)","+"]
["GL894231.1_44092","ENSSSCG00000027094","ENSSSCT00000028857.1","predicted","mir-154 skeleton-with-bp","-"]
["GL894231.1_44082","ENSSSCG00000021659","ENSSSCT00000023298.1","predicted","ENSSSCG00000021659 skeleton-with-bp","-"]
["GL894231.1_44074","ENSSSCG00000026373","ENSSSCT00000028115.1","predicted","mir-154 skeleton-with-bp","-"]
["12_25369","-","-","none","snoRNA (no miRNA annotation)"]
["GL894231.1_44108","ENSSSCG00000029932","ENSSSCT00000031819.1","predicted","ENSSSCG00000029932 skeleton-with-bp","-"]
["GL894231.1_44108","ENSSSCG00000020734","ENSSSCT00000022346.1","known miRNA","ssc-mir-376c (GL894231.1:32,033-32,118 reverse)","-"]
["1_1168","ENSSSCG00000019572","ENSSSCT00000021167.1","known miRNA","ssc-mir-122 (1:179916336-179916420 reverse)","-"]
["1_1168","ENSSSCG00000019572","ENSSSCT00000021167.1","known miRNA","ssc-mir-122 (1:179916336-179916420 reverse)","-"]
["X_39122","ENSSSCG00000028028","ENSSSCT00000029806.1","predicted","mir-188 skeleton-with-bp (many miRNA, novel seq nearby)","+"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["X_39256","ENSSSCG00000018719","ENSSSCT00000020314.2","known miRNA","ssc-mir-374a (reverse)","-"]
["7_18912","ENSSSCG00000019541","ENSSSCT00000021136.1","predicted","mir-208 skeleton-with-bp (reverse; ssc-mir-208b nearby)","-"]
["13_28053","ENSSSCG00000027220","ENSSSCT00000028971.1","predicted","mir-551 skeleton-with-bp","+"]
["6_14565","ENSSSCG00000024128","ENSSSCT00000025777.1","predicted","mir-8 skeleton-with-bp (ssc-mir-429 nearby)","+"]
["JH118928.1_41756"," -"," -","none","protein coding gene (no miRNA annotation)"]
["GL894231.1_44094","ENSSSCG00000022452","ENSSSCT00000024079.1","predicted","mir-544 skeleton-with-bp","-"]
["17_36762","ENSSSCG00000022807","ENSSSCT00000020052.2","known miRNA","ssc-mir-486-2 (reverse)","-"]
["17_36762","ENSSSCG00000022807","ENSSSCT00000020052.2","known miRNA","ssc-mir-486-2 (reverse)","-"]
["17_36762","ENSSSCG00000022807","ENSSSCT00000020052.2","known miRNA","ssc-mir-486-2 (reverse)","-"]
["1_3654","ENSSSCG00000018210","ENSSSCT00000019805.2","known miRNA","ssc-mir-126 (forward)","+"]
["14_31131","-","-","none","protein coding gene (no miRNA annotation; TECTB-201)"]
["14_31131","-","-","none","protein coding gene (no miRNA annotation; TECTB-201)"]
["X_40048","-","-","none","protein coding gene (no miRNA annotation; KDM5C-001)"]
["1_851","ENSSSCG00000018328","ENSSSCT00000019923.1","predicted","mir-147 skeleton-with-bp","+"]
["X_39264","ENSSSCG00000018346","ENSSSCT00000019941.1","predicted","mir-384 skeleton-with-bp (ssc-mir-325 nearby)","+"]
["12_26433","ENSSSCG00000024675","ENSSSCT00000026374.1","known miRNA","ssc-mir-388 skeleton-with-bp","+"]
["12_26433","ENSSSCG00000024675","ENSSSCT00000026374.1","known miRNA","ssc-mir-388 skeleton-with-bp","+"]
["GL894231.1_44088","ENSSSCG00000030667","ENSSSCT00000032537.1","predicted","mir-154 skeleton-with-bp (many miRNA seq nearby)","-"]
["1_1860","ENSSSCG00000027037","ENSSSCT00000028795.1","predicted","mir-219 skeleton-with-bp","-"]
["1_1860","ENSSSCG00000027037","ENSSSCT00000028795.1","predicted","mir-219 skeleton-with-bp","-"]
["1_1860","ENSSSCG00000027037","ENSSSCT00000028795.1","predicted","mir-219 skeleton-with-bp","-"]
["2_5120","ENSSSCG00000020650","ENSSSCT00000022246.1","predicted","ENSSSCG00000020650 skeleton-with-bp","+"]
[]
["* Nearby Ensembl Gene and Transcript Accession IDs are within 0.5 kb of the predicted precursor sequence coordinates obtained from miRDeep2."]