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[null,"Extended Data Files: All bisulfite sequencing data obtained for the triple mutant rdd and WT for a range of defense-related genes are represented in File 1. Methylation data for single mutants ros1-3, dml2-1, dml3-1 as well as WT and triple mutant rdd are shown in File 2. The peak height raw data obtained from the Mutation Surveyor analyses are shown for both biological replicates for all regions analysed. Where no methylation per cent data has been recorded, the sequencing did not work for that replicate. Where no peak height calculation is shown, the sequencing trace showed either full methylation or no methylation at the site in question and data have been added manually. Only sites that show either full methylation or full conversion have been manually included in the analyses. Trace figures show the average of the biological duplicates and error bars were omitted for easier visualisation. Trace figure data are represented as either compiled figures or individual figures for each genotype. Data are split according to methylation type. For promoter regions sequenced see Figure 3."]

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[null,"At4G09420","region C"]
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[]
[null,null,"Region C",{"$nulls":5},"CHH methylation",{"$nulls":11},"CG methylation",{"$nulls":8},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":23}
["shoot samples all genotypes"]
{"$rows_empty":25}
["shoot and root samples in WT"]
{"$rows_empty":21}
["shoot and root samples in rdd"]

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[null,null,1640,"C","T",0,1015,0,1,0]
[null,"rdd mock shoots",1640,"C","T",71,976,6.7799999999999999E-2,0.93220000000000003,6.7799999999999999E-2]
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[null,"rdd Fox shoots",1640,"C","T",0,1034,0,1,0]
[null,null,1640,"C","T",59,1023,5.45E-2,0.94550000000000001,5.45E-2]
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[null,null,1640,"C","T",0,1052,0,1,0]
[null,"WT Fox roots",1640,"C","T",0,926,0,1,0,{"$f":"_xlfn.T.TEST(J383:J384,J387:J388,2,2)","v":{"$error":"#DIV/0!"}}]
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[null,"rdd mock roots",1640,"C","T",0,987,0,1,0]
[]
[null,"rdd Fox roots",1640,"C","T",0,1099,0,1,0]
[null,null,1640,"C","T",0,933,0,1,0]
[null,"WT mock shoots",1649,"C","T",0,979,0,1,0,{"$f":"_xlfn.T.TEST(J389:J390,J393:J394,2,2)","v":1.1821595889582762E-2}]
[null,null,1649,"C","T",0,955,0,1,0]
[null,"WT Fox shoots",1649,"C","T",49,987,4.7300000000000002E-2,0.95269999999999999,4.7300000000000002E-2,{"$f":"_xlfn.T.TEST(J391:J392,J395:J396,2,2)","v":2.182648858875097E-2}]
[null,null,1649,"C","T",0,972,0,1,0]
[null,"rdd mock shoots",1649,"C","T",275,912,0.23169999999999999,0.76829999999999998,0.23169999999999999]
[null,null,1649,"C","T",409,1007,0.2888,0.71120000000000005,0.2888]
[null,"rdd Fox shoots",1649,"C","T",197,901,0.1794,0.8206,0.1794]
[null,null,1649,"C","T",220,949,0.18820000000000001,0.81179999999999997,0.18820000000000001]
[null,"WT mock roots",1649,"C","T",120,992,0.1079,0.8921,0.1079,{"$f":"_xlfn.T.TEST(J397:J398,J401:J402,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1649,"C","T",126,923,0.1201,0.87990000000000002,0.1201]
[null,"WT Fox roots",1649,"C","T",57,960,5.6000000000000001E-2,0.94399999999999995,5.6000000000000001E-2,{"$f":"_xlfn.T.TEST(J399:J400,J403:J404,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1649,"C","T",58,1023,5.3699999999999998E-2,0.94630000000000003,5.3699999999999998E-2]
[null,"rdd mock roots",1649,"C","T",421,839,0.33410000000000001,0.66590000000000005,0.33410000000000001]
[]
[null,"rdd Fox roots",1649,"C","T",439,806,0.35260000000000002,0.64739999999999998,0.35260000000000002]
[{"$nulls":8},"nd"]
[null,"WT mock shoots",1653,"C","T",84,1003,7.7299999999999994E-2,0.92269999999999996,7.7299999999999994E-2,{"$f":"_xlfn.T.TEST(J405:J406,J409:J410,2,2)","v":3.7882245166093235E-4}]
[null,null,1653,"C","T",73,982,6.9199999999999998E-2,0.93079999999999996,6.9199999999999998E-2]
[null,"WT Fox shoots",1653,"C","T",69,1010,6.3899999999999998E-2,0.93610000000000004,6.3899999999999998E-2,{"$f":"_xlfn.T.TEST(J407:J408,J411:J412,2,2)","v":1.8504968523686622E-2}]
[null,null,1653,"C","T",0,1001,0,1,0]
[null,"rdd mock shoots",1653,"C","T",579,866,0.4007,0.59930000000000005,0.4007]
[null,null,1653,"C","T",675,968,0.4108,0.58919999999999995,0.4108]
[null,"rdd Fox shoots",1653,"C","T",383,873,0.3049,0.69510000000000005,0.3049]
[null,null,1653,"C","T",511,920,0.35709999999999997,0.64290000000000003,0.35709999999999997]
[null,"WT mock roots",1653,"C","T",164,986,0.1426,0.85740000000000005,0.1426,{"$f":"_xlfn.T.TEST(J413:J414,J417:J418,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1653,"C","T",158,965,0.14069999999999999,0.85929999999999995,0.14069999999999999]
[null,"WT Fox roots",1653,"C","T",108,994,9.8000000000000004E-2,0.90200000000000002,9.8000000000000004E-2,{"$f":"_xlfn.T.TEST(J415:J416,J419:J420,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1653,"C","T",117,1063,9.9199999999999997E-2,0.90080000000000005,9.9199999999999997E-2]
[null,"rdd mock roots",1653,"C","T",684,806,0.45910000000000001,0.54090000000000005,0.45910000000000001]
[]
[null,"rdd Fox roots",1653,"C","T",822,711,0.53620000000000001,0.46379999999999999,0.53620000000000001]
[{"$nulls":8},"nd"]
[null,"WT mock shoots",1656,"C","T",0,915,0,1,0,{"$f":"_xlfn.T.TEST(J421:J422,J425:J426,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1656,"C","T",0,956,0,1,0]
[null,"WT Fox shoots",1656,"C","T",0,925,0,1,0,{"$f":"_xlfn.T.TEST(J423:J424,J427:J428,2,2)","v":{"$error":"#DIV/0!"}}]
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[null,"rdd mock shoots",1656,"C","T",0,972,0,1,0]
[null,null,1656,"C","T",0,1107,0,1,0]
[null,"rdd Fox shoots",1656,"C","T",0,962,0,1,0]
[null,null,1656,"C","T",0,991,0,1,0]
[null,"WT mock roots",1656,"C","T",0,945,0,1,0,{"$f":"_xlfn.T.TEST(J429:J430,J433:J434,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1656,"C","T",0,941,0,1,0]
[null,"WT Fox roots",1656,"C","T",0,944,0,1,0,{"$f":"_xlfn.T.TEST(J431:J432,J435:J436,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1656,"C","T",0,1006,0,1,0]
[null,"rdd mock roots",1656,"C","T",0,903,0,1,0]
[]
[null,"rdd Fox roots",1656,"C","T",0,1018,0,1,0]
[{"$nulls":8},"nd"]
[null,"WT mock shoots",1657,"C","T",55,1412,3.7499999999999999E-2,0.96250000000000002,3.7499999999999999E-2,{"$f":"_xlfn.T.TEST(J437:J438,J441:J442,2,2)","v":1.538337152071053E-2}]
[null,null,1657,"C","T",51,1475,3.3399999999999999E-2,0.96660000000000001,3.3399999999999999E-2]
[null,"WT Fox shoots",1657,"C","T",53,1430,3.5700000000000003E-2,0.96430000000000005,3.5700000000000003E-2,{"$f":"_xlfn.T.TEST(J439:J440,J443:J444,2,2)","v":0.17253422800495155}]
[null,null,1657,"C","T",0,1532,0,1,0]
[null,"rdd mock shoots",1657,"C","T",107,1543,6.4799999999999996E-2,0.93520000000000003,6.4799999999999996E-2]
[null,null,1657,"C","T",104,1645,5.9499999999999997E-2,0.9405,5.9499999999999997E-2]
[null,"rdd Fox shoots",1657,"C","T",80,1484,5.1200000000000002E-2,0.94879999999999998,5.1200000000000002E-2]
[null,null,1657,"C","T",135,1559,7.9699999999999993E-2,0.92030000000000001,7.9699999999999993E-2]
[null,"WT mock roots",1657,"C","T",79,1427,5.2499999999999998E-2,0.94750000000000001,5.2499999999999998E-2,{"$f":"_xlfn.T.TEST(J445:J446,J449:J450,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1657,"C","T",70,1445,4.6199999999999998E-2,0.95379999999999998,4.6199999999999998E-2]
[null,"WT Fox roots",1657,"C","T",0,1508,0,1,0,{"$f":"_xlfn.T.TEST(J447:J448,J451:J452,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,1657,"C","T",82,1511,5.1499999999999997E-2,0.94850000000000001,5.1499999999999997E-2]
[null,"rdd mock roots",1657,"C","T",56,1417,3.7999999999999999E-2,0.96199999999999997,3.7999999999999999E-2]
[]
[null,"rdd Fox roots",1657,"C","T",97,1487,6.1199999999999997E-2,0.93879999999999997,6.1199999999999997E-2]
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[null,"rdd mock shoots",1658,"C","T",78,1068,6.8099999999999994E-2,0.93189999999999995,6.8099999999999994E-2,null," "]
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[null,"rdd Fox shoots",1658,"C","T",68,991,6.4199999999999993E-2,0.93579999999999997,6.4199999999999993E-2]
[null,null,1658,"C","T",81,1095,6.8900000000000003E-2,0.93110000000000004,6.8900000000000003E-2]
[null,"WT mock roots",1658,"C","T",53,1077,4.6899999999999997E-2,0.95309999999999995,4.6899999999999997E-2,{"$f":"_xlfn.T.TEST(J461:J462,J465:J466,2,2)","v":{"$error":"#DIV/0!"}}]
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[]
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[]
[null,null,"Region B",{"$nulls":5},"CHH methylation",{"$nulls":6},"CG methylation",{"$nulls":6},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":18}
["shoot samples all genotypes"]
{"$rows_empty":20}
["shoot and root samples in WT"]
{"$rows_empty":19}
["shoot and root samples in rdd"]

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[null,"rdd mock shoots",768,"C","T",667,840,0.44259999999999999,0.55740000000000001,0.44259999999999999,null,{"$f":"_xlfn.T.TEST(J9:J10,J17:J18,2,2)","v":0.34141320222320226},null,null,"rdd mock shoots",1820,"C","T",0,898,0,1,0]
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[null,"rdd Fox shoots",768,"C","T",535,860,0.38350000000000001,0.61650000000000005,0.38350000000000001,null,{"$f":"_xlfn.T.TEST(J11:J12,J19:J20,2,2)","v":9.9414299192419397E-2},null,null,"rdd Fox shoots",1820,"C","T",76,839,8.3099999999999993E-2,0.91690000000000005,8.3099999999999993E-2]
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[null,"WT Fox roots",768,"C","T",522,793,0.39700000000000002,0.60299999999999998,0.39700000000000002,{"$f":"_xlfn.T.TEST(J15:J16,J19:J20,2,2)","v":7.4484874702988479E-2},null,null,null,"WT Fox roots",1820,"C","T",0,933,0,1,0,{"$f":"_xlfn.T.TEST(W15:W16,W19:W20,2,2)","v":0.42264973081037416}]
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[null,"WT Fox shoots",782,"C","T",183,1021,0.152,0.84799999999999998,0.152,{"$f":"_xlfn.T.TEST(J23:J24,J27:J28,2,2)","v":8.8077023875966609E-2},{"$f":"_xlfn.T.TEST(J23:J24,J31:J32,2,2)","v":0.23640172384065516},null,null,"WT Fox shoots",1830,"C","T",50,1381,3.49E-2,0.96509999999999996,3.49E-2,{"$f":"_xlfn.T.TEST(W23:W24,W27:W28,2,2)","v":0.74974236951059714}]
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[null,"rdd mock shoots",782,"C","T",202,1146,0.14990000000000001,0.85009999999999997,0.14990000000000001,null,{"$f":"_xlfn.T.TEST(J25:J26,J33:J34,2,2)","v":0.39233691146009186},null,null,"rdd mock shoots",1830,"C","T",0,1400,0,1,0]
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[null,"WT Fox roots",782,"C","T",201,1193,0.14419999999999999,0.85580000000000001,0.14419999999999999,{"$f":"_xlfn.T.TEST(J31:J32,J35:J36,2,2)","v":0.19495233162681502},null,null,null,"WT Fox roots",1830,"C","T",0,1356,0,1,0,{"$f":"_xlfn.T.TEST(W31:W32,W35:W36,2,2)","v":{"$error":"#DIV/0!"}}]
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[null,null,782,"C","T",166,1056,0.1358,0.86419999999999997,0.1358,{"$nulls":5},1830,"C","T",0,1327,0,1,0]
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[null,"rdd Fox shoots",949,"T","C",515,1058,0.32740000000000002,0.67259999999999998,0.67259999999999998,null,{"$f":"_xlfn.T.TEST(J283:J284,J291:J292,2,2)","v":1.6780355306687068E-2},null,null,"rdd Fox shoots",1979,"C","T",84,657,0.1134,0.88660000000000005,0.1134]
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[null,"rdd mock roots",949,"T","C",718,868,0.45269999999999999,0.54730000000000001,0.54730000000000001,null,null,{"$f":"_xlfn.T.TEST(J289:J290,J291:J292,2,2)","v":9.7423103380695902E-3},null,"rdd mock roots",1979,"C","T",0,743,0,1,0]
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[null,"rdd Fox roots",949,"T","C",622,929,0.40100000000000002,0.59899999999999998,0.59899999999999998,{"$nulls":4},"rdd Fox roots",1979,"C","T",0,725,0,1,0]
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[null,"WT mock shoots",971,"T","C",442,2203,0.1671,0.83289999999999997,0.83289999999999997,{"$f":"_xlfn.T.TEST(J293:J294,J297:J298,2,2)","v":0.30292885089355759},{"$f":"_xlfn.T.TEST(J293:J294,J301:J302,2,2)","v":0.16858972965299068},null,null,"WT mock shoots",1981,"C","T",78,849,8.4099999999999994E-2,0.91590000000000005,8.4099999999999994E-2,{"$f":"_xlfn.T.TEST(W293:W294,W297:W298,2,2)","v":0.78400084912169765}]
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[null,"WT Fox shoots",971,"T","C",516,1076,0.3241,0.67589999999999995,0.67589999999999995,{"$f":"_xlfn.T.TEST(J295:J296,J299:J300,2,2)","v":8.9591163665519336E-2},{"$f":"_xlfn.T.TEST(J295:J296,J303:J304,2,2)","v":0.39465594929550762},null,null,"WT Fox shoots",1981,"C","T",58,832,6.5199999999999994E-2,0.93479999999999996,6.5199999999999994E-2,{"$f":"_xlfn.T.TEST(W295:W296,W299:W300,2,2)","v":0.77078287847661575}]
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[null,"rdd mock shoots",971,"T","C",544,1150,0.3211,0.67889999999999995,0.67889999999999995,null,{"$f":"_xlfn.T.TEST(J297:J298,J305:J306,2,2)","v":0.18907791159699794},null,null,"rdd mock shoots",1981,"C","T",0,872,0,1,0]
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[null,"rdd Fox shoots",971,"T","C",627,1090,0.36520000000000002,0.63480000000000003,0.63480000000000003,null,{"$f":"_xlfn.T.TEST(J299:J300,J307:J308,2,2)","v":0.38008047513809073},null,null,"rdd Fox shoots",1981,"C","T",93,777,0.1069,0.8931,0.1069]
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[null,"WT Fox roots",971,"T","C",540,1157,0.31819999999999998,0.68179999999999996,0.68179999999999996,{"$f":"_xlfn.T.TEST(J303:J304,J307:J308,2,2)","v":0.13846080461298416},null,null,null,"WT Fox roots",1981,"C","T",0,858,0,1,0,{"$f":"_xlfn.T.TEST(W303:W304,W307:W308,2,2)","v":0.42264973081037416}]
[null,null,971,"T","C",592,1160,0.33789999999999998,0.66210000000000002,0.66210000000000002,{"$nulls":5},1981,"C","T",0,851,0,1,0]
[null,"rdd mock roots",971,"T","C",801,865,0.48080000000000001,0.51919999999999999,0.51919999999999999,null,null,{"$f":"_xlfn.T.TEST(J305:J306,J307:J308,2,2)","v":0.13504677564873202},null,"rdd mock roots",1981,"C","T",0,867,0,1,0]
[null,null,971,"T","C",817,909,0.4733,0.52669999999999995,0.52669999999999995,{"$nulls":5},1981,"C","T",0,822,0,1,0]
[null,"rdd Fox roots",971,"T","C",639,1071,0.37369999999999998,0.62629999999999997,0.62629999999999997,{"$nulls":4},"rdd Fox roots",1981,"C","T",0,871,0,1,0]
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[null,"WT Fox shoots",986,"T","C",313,1273,0.19739999999999999,0.80259999999999998,0.80259999999999998,{"$f":"_xlfn.T.TEST(J311:J312,J315:J316,2,2)","v":9.1050461845222697E-2},{"$f":"_xlfn.T.TEST(J311:J312,J319:J320,2,2)","v":4.7111661755438503E-2},null,null,"WT Fox shoots",1987,"C","T",55,991,5.2600000000000001E-2,0.94740000000000002,5.2600000000000001E-2,{"$f":"_xlfn.T.TEST(W311:W312,W315:W316,2,2)","v":0.42264973081037416}]
[null,null,986,"T","C",237,1178,0.16750000000000001,0.83250000000000002,0.83250000000000002,{"$nulls":5},1987,"C","T",0,1003,0,1,0]
[null,"rdd mock shoots",986,"T","C",363,1317,0.21609999999999999,0.78390000000000004,0.78390000000000004,null,{"$f":"_xlfn.T.TEST(J313:J314,J321:J322,2,2)","v":8.9871701380964796E-3},null,null,"rdd mock shoots",1987,"C","T",0,1045,0,1,0]
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[null,null,986,"T","C",588,1177,0.33310000000000001,0.66690000000000005,0.66690000000000005,{"$nulls":5},1987,"C","T",0,990,0,1,0]
[null,"WT Fox roots",986,"T","C",446,1290,0.25690000000000002,0.74309999999999998,0.74309999999999998,{"$f":"_xlfn.T.TEST(J319:J320,J323:J324,2,2)","v":6.8152395195609006E-2},null,null,null,"WT Fox roots",1987,"C","T",0,943,0,1,0,{"$f":"_xlfn.T.TEST(W319:W320,W323:W324,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,986,"T","C",513,1304,0.2823,0.7177,0.7177,{"$nulls":5},1987,"C","T",0,941,0,1,0]
[null,"rdd mock roots",986,"T","C",769,1030,0.42749999999999999,0.57250000000000001,0.57250000000000001,null,null,{"$f":"_xlfn.T.TEST(J321:J322,J323:J324,2,2)","v":5.2081411776008113E-2},null,"rdd mock roots",1987,"C","T",0,995,0,1,0]
[null,null,986,"T","C",785,1048,0.42830000000000001,0.57169999999999999,0.57169999999999999,{"$nulls":5},1987,"C","T",0,945,0,1,0]
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[null,null,986,"C","T",1161,679,0.63100000000000001,0.36899999999999999,0.63100000000000001,{"$nulls":5},1987,"C","T",0,978,0,1,0]
[null,"WT mock shoots",990,"T","C",142,2762,4.8899999999999999E-2,0.95109999999999995,0.95109999999999995,{"$f":"_xlfn.T.TEST(J325:J326,J329:J330,2,2)","v":0.5403280190464973},{"$f":"_xlfn.T.TEST(J325:J326,J333:J334,2,2)","v":6.669898104640859E-2},null,null,"WT mock shoots",2008,"C","T",0,759,0,1,0,{"$f":"_xlfn.T.TEST(W325:W326,W329:W330,2,2)","v":{"$error":"#DIV/0!"}}]
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[null,"WT Fox shoots",990,"T","C",208,1342,0.13420000000000001,0.86580000000000001,0.86580000000000001,{"$f":"_xlfn.T.TEST(J327:J328,J331:J332,2,2)","v":0.13204743333677327},{"$f":"_xlfn.T.TEST(J327:J328,J335:J336,2,2)","v":0.32367196181927904},null,null,"WT Fox shoots",2008,"C","T",0,723,0,1,0,{"$f":"_xlfn.T.TEST(W327:W328,W331:W332,2,2)","v":{"$error":"#DIV/0!"}}]
[null,null,990,"T","C",172,1224,0.1232,0.87680000000000002,0.87680000000000002,{"$nulls":5},2008,"C","T",0,749,0,1,0]
[null,"rdd mock shoots",990,"T","C",164,1581,9.4E-2,0.90600000000000003,0.90600000000000003,null,{"$f":"_xlfn.T.TEST(J329:J330,J337:J338,2,2)","v":7.4604302352151874E-2},null,null,"rdd mock shoots",2008,"C","T",0,773,0,1,0]
[null,null,990,"T","C",210,1496,0.1231,0.87690000000000001,0.87690000000000001,{"$nulls":5},2008,"C","T",0,787,0,1,0]
[null,"rdd Fox shoots",990,"T","C",198,1757,0.1013,0.89870000000000005,0.89870000000000005,null,{"$f":"_xlfn.T.TEST(J331:J332,J339:J340,2,2)","v":1.6730997355196169E-2},null,null,"rdd Fox shoots",2008,"C","T",0,700,0,1,0]
[null,null,990,"T","C",193,1497,0.1142,0.88580000000000003,0.88580000000000003,{"$nulls":5},2008,"C","T",0,752,0,1,0]
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{"sheet":"AT5G24210","index":6,"n_rows":72,"n_cols":29,"rows_kept":72,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,"Region A,C",{"$nulls":5},"CHH methylation",{"$nulls":11},"CG methylation",{"$nulls":7},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":20}
["shoot samples all genotypes"]
{"$rows_empty":21}
["shoot and root samples in WT"]
{"$rows_empty":21}
["shoot and root samples in rdd"]

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[]
[null,"At4G33720","region A",{"$nulls":10},"region B"]
[]
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[null,"rdd Fox roots",1516,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1887,"C","T",null,null,0,1,0]
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[null,"WT mock shoots",1518,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1916,"C","T",null,null,0,1,0]
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[null,"rdd mock shoots",1518,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1916,"C","T",null,null,0,1,0]
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[null,"rdd Fox shoots",1518,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1916,"C","T",null,null,0,1,0]
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[null,"rdd mock roots",1518,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1916,"C","T",null,null,0,1,0]
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[null,"rdd Fox roots",1518,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1916,"C","T",null,null,0,1,0]
[null,null,1518,"C","T",null,null,0,1,0,null,null,null,1916,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1520,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1920,"C","T",null,null,0,1,0]
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[null,"WT Fox shoots",1520,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1520,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1520,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"WT mock roots",1520,"C","T",null,null,0,1,0,null,null,"WT mock roots",1920,"C","T",null,null,0,1,0]
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[null,"WT Fox roots",1520,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1520,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1520,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1920,"C","T",null,null,0,1,0]
[null,null,1520,"C","T",null,null,0,1,0,null,null,null,1920,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1527,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1961,"C","T",null,null,0,1,0]
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[null,"WT Fox shoots",1527,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1961,"C","T",null,null,0,1,0]
[null,null,1527,"C","T",null,null,0,1,0,null,null,null,1961,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1527,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1961,"C","T",null,null,0,1,0]
[null,null,1527,"C","T",null,null,0,1,0,null,null,null,1961,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1527,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1961,"C","T",null,null,0,1,0]
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[null,"WT mock roots",1527,"C","T",null,null,0,1,0,null,null,"WT mock roots",1961,"C","T",null,null,0,1,0]
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[null,"WT Fox roots",1527,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1961,"C","T",null,null,0,1,0]
[null,null,1527,"C","T",null,null,0,1,0,null,null,null,1961,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1527,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1961,"C","T",null,null,0,1,0]
[null,null,1527,"C","T",null,null,0,1,0,null,null,null,1961,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1527,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1961,"C","T",null,null,0,1,0]
[null,null,1527,"C","T",null,null,0,1,0,null,null,null,1961,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1530,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1530,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1530,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1530,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"WT mock roots",1530,"C","T",null,null,0,1,0,null,null,"WT mock roots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1530,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1530,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1530,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1966,"C","T",null,null,0,1,0]
[null,null,1530,"C","T",null,null,0,1,0,null,null,null,1966,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1532,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1532,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1532,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1532,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"WT mock roots",1532,"C","T",null,null,0,1,0,null,null,"WT mock roots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1532,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1532,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1532,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1991,"C","T",null,null,0,1,0]
[null,null,1532,"C","T",null,null,0,1,0,null,null,null,1991,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1534,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1534,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1534,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1534,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"WT mock roots",1534,"C","T",null,null,0,1,0,null,null,"WT mock roots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1534,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1534,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1534,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1996,"C","T",null,null,0,1,0]
[null,null,1534,"C","T",null,null,0,1,0,null,null,null,1996,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1536,"C","T",null,null,0,1,0,null,null,"WT mock shoots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1536,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1536,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1536,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"WT mock roots",1536,"C","T",null,null,0,1,0,null,null,"WT mock roots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1536,"C","T",null,null,0,1,0,null,null,"WT Fox roots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1536,"C","T",null,null,0,1,0,null,null,"rdd mock roots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1536,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",1999,"C","T",null,null,0,1,0]
[null,null,1536,"C","T",null,null,0,1,0,null,null,null,1999,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1537,"C","T",null,null,0,1,0,null,null,"WT mock shoots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1537,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1537,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1537,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"WT mock roots",1537,"C","T",null,null,0,1,0,null,null,"WT mock roots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1537,"C","T",null,null,0,1,0,null,null,"WT Fox roots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1537,"C","T",null,null,0,1,0,null,null,"rdd mock roots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"rdd Fox roots",1537,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",2017,"C","T",null,null,0,1,0]
[null,null,1537,"C","T",null,null,0,1,0,null,null,null,2017,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1543,"C","T",null,null,0,1,0,null,null,"WT mock shoots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"WT Fox shoots",1543,"C","T",null,null,0,1,0,null,null,"WT Fox shoots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"rdd mock shoots",1543,"C","T",null,null,0,1,0,null,null,"rdd mock shoots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"rdd Fox shoots",1543,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"WT mock roots",1543,"C","T",null,null,0,1,0,null,null,"WT mock roots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"WT Fox roots",1543,"C","T",null,null,0,1,0,null,null,"WT Fox roots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
[null,"rdd mock roots",1543,"C","T",null,null,0,1,0,null,null,"rdd mock roots",2021,"C","T",null,null,0,1,0]
[null,null,1543,"C","T",null,null,0,1,0,null,null,null,2021,"C","T",null,null,0,1,0]
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[null,"rdd Fox shoots",1682,"C","T",null,null,0,1,0,null,null,"rdd Fox shoots",2112,"C","T",null,null,0,1,0]
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[null,"WT mock roots",1682,"C","T",null,null,0,1,0,null,null,"WT mock roots",2112,"C","T",null,null,0,1,0]
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[null,"WT Fox roots",1682,"C","T",null,null,0,1,0,null,null,"WT Fox roots",2112,"C","T",null,null,0,1,0]
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[null,"rdd mock roots",1682,"C","T",null,null,0,1,0,null,null,"rdd mock roots",2112,"C","T",null,null,0,1,0]
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[null,"rdd Fox roots",1682,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",2112,"C","T",null,null,0,1,0]
[null,null,1682,"C","T",null,null,0,1,0,null,null,null,2112,"C","T",null,null,0,1,0]
[null,"WT mock shoots",1689,"C","T",null,null,0,1,0,null,null,"WT mock shoots",2113,"C","T",null,null,0,1,0]
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[null,"rdd Fox roots",1689,"C","T",null,null,0,1,0,null,null,"rdd Fox roots",2113,"C","T",null,null,0,1,0]
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{"sheet":"AT4G33720","index":8,"n_rows":70,"n_cols":29,"rows_kept":70,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,"Region A,B",{"$nulls":5},"CHH methylation",{"$nulls":11},"CG methylation",{"$nulls":7},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":20}
["shoot samples all genotypes"]
{"$rows_empty":21}
["shoot and root samples in WT"]
{"$rows_empty":19}
["shoot and root samples in rdd"]

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[]
[null,"At5G38550","region A",{"$nulls":10},"region B",{"$nulls":10},"region C"]
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[null,"rdd Fox roots",1011,"T","C",1043,107,0.90700000000000003,9.2999999999999999E-2,9.2999999999999999E-2,null,null,"rdd Fox roots",1424,"T","C",637,583,0.52210000000000001,0.47789999999999999,0.47789999999999999,null,null,"rdd Fox roots",1794,"C","T",0,834,0,1,0]
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{"sheet":"AT5G38550","index":10,"n_rows":76,"n_cols":39,"rows_kept":76,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,"Region A,B,C",{"$nulls":5},"CHH methylation",{"$nulls":15},"CG methylation",{"$nulls":13},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":21}
["shoot samples all genotypes"]
{"$rows_empty":23}
["shoot and root samples in WT"]
{"$rows_empty":22}
["shoot and root samples in rdd"]

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[]
[null,"At5G39110","region A"]
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[null,"sample","Position","Normal","Mutation","Norm_Height","Mut_Height","Norm_Percent","Mut_Percent","% methylation","WT vs rdd"]
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[null,null,608,"C","T",2567,0,1,0,1]
[null,"rdd Fox shoots",608,"C","T",2314,0,1,0,1]
[null,null,608,"C","T",null,null,1,null,1]
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[null,"rdd mock roots",608,"C","T",null,null,1,null,1]
[null,null,608,"C","T",null,null,1,null,1]
[null,"rdd Fox roots",608,"C","T",null,null,1,null,1]
[null,null,608,"C","T",null,null,1,null,1]
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[null,"rdd Fox shoots",692,"T","C",779,264,0.74690000000000001,0.25309999999999999,0.25309999999999999]
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{"sheet":"AT5G39110","index":12,"n_rows":76,"n_cols":25,"rows_kept":76,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,"Region A",{"$nulls":5},"CHH methylation",{"$nulls":7},"CG methylation",{"$nulls":7},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":21}
["shoot samples all genotypes"]
{"$rows_empty":23}
["shoot and root samples in WT"]
{"$rows_empty":22}
["shoot and root samples in rdd"]

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[]
[null,"At1G58602","region A"]
[{"$nulls":10},"ttest","ttest","ttest"]
[null,"sample","Position","Normal","Mutation","Norm_Height","Mut_Height","Norm_Percent","Mut_Percent","% methylation","WT vs rdd","shoots vs roots","mock roots vs Fox roots"]
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[null,"rdd Fox roots",3968,"T","C",1006,361,0.7359,0.2641,0.2641]
[null,null,3968,"T","C",557,710,0.43959999999999999,0.56040000000000001,0.56040000000000001]
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[null,null,3973,"C","T",538,289,0.65049999999999997,0.34949999999999998,0.65049999999999997]
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[null,null,3973,"C","T",601,261,0.69720000000000004,0.30280000000000001,0.69720000000000004]
[null,"WT mock roots",3973,"C","T",611,235,0.72219999999999995,0.27779999999999999,0.72219999999999995,{"$f":"_xlfn.T.TEST(J173:J174,J177:J178,2,2)","v":0.19949572061250742},null,{"$f":"_xlfn.T.TEST(J173:J174,J175:J176,2,2)","v":0.7119750015539843}]
[null,null,3973,"C","T",668,190,0.77859999999999996,0.22140000000000001,0.77859999999999996]
[null,"WT Fox roots",3973,"C","T",637,177,0.78259999999999996,0.21740000000000001,0.78259999999999996,{"$f":"_xlfn.T.TEST(J175:J176,J179:J180,2,2)","v":0.26297365777301995}]
[null,null,3973,"C","T",494,253,0.6613,0.3387,0.6613]
[null,"rdd mock roots",3973,"C","T",658,279,0.70220000000000005,0.29780000000000001,0.70220000000000005,null,null,{"$f":"_xlfn.T.TEST(J177:J178,J179:J180,2,2)","v":0.15709149341863282}]
[null,null,3973,"C","T",800,450,0.64,0.36,0.64]
[null,"rdd Fox roots",3973,"T","C",0,827,0,1,1]
[null,null,3973,"T","C",138,559,0.19800000000000001,0.80200000000000005,0.80200000000000005]

{"sheet":"AT1G58602","index":14,"n_rows":76,"n_cols":25,"rows_kept":76,"cut":false,"hidden":false,"merged":[]}
[]
[null,null,"Region A",{"$nulls":5},"CHH methylation",{"$nulls":8},"CG methylation",{"$nulls":6},"CHG methylation"]
[]
[]
[]
[]
["root samples all genotypes"]
{"$rows_empty":21}
["shoot samples all genotypes"]
{"$rows_empty":23}
["shoot and root samples in WT"]
{"$rows_empty":22}
["shoot and root samples in rdd"]