Table 15. List of the auxin action related genes with expression change in response to exogenous auxin treatment Name GeneName Mock_repeat1 Mock_repeat2 Mock_repeat3 treatment_repeat1 treatment_repeat2 treatment_repeat3 fold_change log2fold_change pvalue FDR BriefDescription PhYUC3 PH01000209G0350 0.09 0.30 0.24 0.00 0.14 0.13 0.42 -1.24 1.23E-01 4.39E-01 flavin-containing_monooxygenase_yucca3 PhPIN9 PH01000642G0520 12.41 18.09 15.29 6.22 7.16 6.18 0.43 -1.23 2.87E-10 1.83E-08 auxin_efflux_carrier PhLAX6 PH01001222G0340 11.19 11.42 13.01 5.44 8.10 5.17 0.53 -0.93 3.46E-06 1.01E-04 aux1-like_permease PhARF10 PH01000093G0670 33.93 27.59 33.02 16.90 13.63 20.55 0.54 -0.89 3.33E-06 9.80E-05 auxin_response_factor_partial PhLAX4 PH01000373G0290 15.15 16.07 17.74 9.13 9.45 8.79 0.56 -0.84 4.40E-07 1.58E-05 aux1-like_permease PhARF17 PH01000237G0420 0.56 0.93 0.60 1.18 1.22 0.82 1.54 0.63 5.91E-02 2.77E-01 ettin_protein PhLAX3 PH01000339G0320 3.04 1.54 2.23 3.74 2.93 3.91 1.56 0.64 1.36E-02 9.97E-02 aux1-like_permease PhARF7 PH01000046G0220 11.21 9.61 10.35 18.75 13.85 16.27 1.57 0.65 1.75E-04 3.02E-03 ettin_protein PhARF27 PH01000845G0410 0.09 0.10 0.05 0.11 0.17 0.12 1.60 0.68 1.31E-01 4.55E-01 auxin_response_factor_10 PhARF6 PH01000044G0540 0.49 0.22 0.47 0.94 0.61 0.33 1.61 0.69 1.56E-01 5.03E-01 auxin_response_factor_10 PhYUC5 PH01000209G0380 1.36 0.89 0.47 0.61 1.78 1.99 1.61 0.69 2.03E-01 5.83E-01 flavin-containing_monooxygenase_yucca3 PhIAA1 PH01000003G3650 179.82 231.61 174.80 365.30 258.50 331.44 1.63 0.70 1.68E-04 2.92E-03 aux_iaa_protein PhIAA13 PH01000497G0760 73.27 129.07 137.31 165.19 232.04 161.03 1.64 0.72 1.59E-03 1.89E-02 aux_iaa_protein PhARF30 PH01001285G0430 7.44 5.99 5.77 10.93 9.86 11.23 1.67 0.74 1.89E-05 4.45E-04 auxin_response_factor_10 PhARF36 PH01002685G0120 9.13 13.29 9.34 22.42 15.06 18.83 1.77 0.83 6.17E-05 1.24E-03 auxin_response_factor_10 PhPIN3 PH01000065G0400 92.96 94.87 100.87 172.59 175.64 164.85 1.78 0.83 3.69E-08 1.63E-06 tpa:_auxin_efflux_carrier PhIAA10 PH01000356G1070 18.62 20.43 21.45 40.36 36.19 32.24 1.80 0.85 3.90E-07 1.42E-05 aux_iaa_protein PhIAA3 PH01000025G1630 44.35 59.52 53.30 106.17 84.29 93.03 1.80 0.85 1.34E-06 4.31E-05 auxin-induced_protein PhPIN1 PH01000009G1330 1.76 1.17 1.65 2.58 3.54 2.42 1.87 0.90 1.18E-04 2.18E-03 auxin_efflux_carrier PhPIN8 PH01000498G0530 6.27 5.00 4.16 10.32 9.60 10.99 2.00 1.00 1.60E-07 6.25E-06 tpa:_auxin_efflux_carrier PhIAA22 PH01001154G0590 55.26 76.25 70.97 125.88 135.88 144.93 2.01 1.01 4.28E-09 2.28E-07 auxin-responsive_protein_expressed PhARF13 PH01000176G0540 15.29 12.68 14.13 26.10 26.10 33.44 2.03 1.02 1.71E-09 9.61E-08 auxin_response_factor_partial PhIAA2 PH01000025G1600 113.92 142.95 155.45 283.66 319.87 319.10 2.24 1.16 5.56E-12 4.53E-10 auxin-responsive_protein_expressed PhIAA26 PH01001580G0170 24.70 30.68 25.74 61.29 58.27 64.35 2.27 1.18 1.08E-12 9.71E-11 aux_iaa_protein PhARF3 PH01000011G0660 0.00 0.00 0.04 0.00 0.06 0.03 2.28 1.19 6.38E-01 9.98E-01 auxin_response_factor_partial PhIAA5 PH01000105G1710 21.11 34.79 32.38 63.55 70.86 67.54 2.29 1.19 7.11E-10 4.20E-08 auxin-induced_protein PhIAA38 PH01005193G0070 40.36 64.62 66.06 121.65 143.24 127.56 2.29 1.20 1.02E-09 5.93E-08 auxin-responsive_protein_expressed PhARF42 PH01005322G0010 19.74 23.58 26.41 45.69 59.87 60.39 2.38 1.25 1.87E-12 1.60E-10 auxin_response_factor_expressed PhIAA39 PH01005322G0010 19.74 23.58 26.41 45.69 59.87 60.39 2.38 1.25 1.87E-12 1.60E-10 auxin_response_factor_expressed PhIAA21 PH01001119G0310 0.21 0.46 0.27 1.14 0.64 0.58 2.51 1.33 3.25E-02 1.84E-01 auxin-induced_protein PhPIN13 PH01002616G0280 1.14 0.72 1.45 2.97 2.57 2.83 2.53 1.34 3.39E-06 9.95E-05 auxin_efflux_carrier PhARF4 PH01000014G0610 6.49 9.43 12.27 21.45 25.29 26.05 2.58 1.37 9.54E-11 6.50E-09 auxin_response_factor_partial PhPIN10 PH01000717G0260 12.58 14.35 11.05 35.60 32.06 30.94 2.60 1.38 2.34E-15 3.03E-13 tpa:_auxin_efflux_carrier PhIAA14 PH01000554G0550 136.41 171.30 184.24 417.77 474.60 425.67 2.68 1.42 4.72E-17 7.43E-15 aux_iaa_protein PhIAA8 PH01000214G1340 15.39 13.07 15.23 31.84 40.55 48.16 2.76 1.46 4.03E-15 5.01E-13 aux_iaa_protein PhYUC13 PH01003290G0170 0.18 0.96 0.74 1.74 1.80 1.88 2.88 1.52 6.63E-04 9.22E-03 flavin-containing_monooxygenase_yucca3 PhIAA31 PH01003159G0070 28.26 28.89 37.88 69.81 101.49 102.86 2.88 1.53 3.11E-15 3.91E-13 aux_iaa_protein PhARF11 PH01000114G0050 4.53 3.62 5.76 11.91 13.57 16.71 3.03 1.60 1.13E-15 1.51E-13 auxin_response_factor_7a PhYUC4 PH01000209G0370 0.50 0.53 0.48 0.96 2.43 2.94 4.21 2.07 8.21E-06 2.15E-04 flavin-containing_monooxygenase_yucca3 PhIAA41 PH01005757G0030 65.40 77.96 69.12 304.96 255.34 335.97 4.22 2.08 1.46E-31 7.71E-29 aux_iaa_protein PhIAA28 PH01001671G0190 0.13 0.14 0.73 1.73 1.92 1.39 5.06 2.34 4.62E-05 9.74E-04 aux_iaa_protein PhYUC9 PH01002317G0180 0.00 0.05 0.00 0.00 0.05 0.23 5.20 2.38 1.68E-01 5.24E-01 dimethylaniline_monooxygenase PhIAA24 PH01001446G0210 9.97 10.81 11.33 60.93 50.38 63.77 5.45 2.45 7.38E-40 7.11E-37 auxin-induced_protein PhIAA4 PH01000075G0200 7.85 11.98 9.92 53.65 50.07 60.73 5.53 2.47 4.03E-36 2.98E-33 nt-_deduced_protein PhIAA25 PH01001567G0470 17.44 20.38 20.59 119.35 116.97 147.55 6.57 2.72 6.68E-52 1.33E-48 aux_iaa_protein PhIAA23 PH01001175G0280 55.18 88.71 78.08 491.11 469.68 503.07 6.59 2.72 7.10E-43 8.36E-40 nt-_deduced_protein PhIAA15 PH01000592G0620 32.76 34.56 34.22 308.98 200.97 331.68 8.29 3.05 2.86E-46 4.13E-43 nt-_deduced_protein