Table 22. Expression changes of ethylene related genes in response to exogenous auxin treatment GeneName Mock_repeat1 Mock_repeat2 Mock_repeat3 treatment_repeat1 treatment_repeat2 treatment_repeat3 fold_change log2fold_change pvalue FDR BriefDescription PH01000791G0820 0.39 0.37 0.70 0.04 0.09 0.16 0.20 -2.34E+00 1.52E-04 0.002688535 ap2_transcription_factor PH01000182G0630 5.87 12.34 10.87 2.83 3.30 1.75 0.27 -1.88E+00 2.04E-09 1.13357E-07 pti6_-like PH01002603G0280 1.46 1.51 1.56 0.66 0.60 0.23 0.33 -1.60E+00 1.86E-05 0.000440213 ap2_domain_containing_expressed PH01000357G0990 10.57 16.15 13.25 6.08 4.16 4.03 0.36 -1.49E+00 4.46E-11 3.20325E-09 alliin_lyase_precursor-like PH01001392G0010 5.78 4.53 4.41 3.07 1.37 2.36 0.46 -1.12E+00 4.41E-04 0.006543247 dre_binding_factor_2 PH01000570G0460 14.59 17.94 12.38 9.62 4.94 7.55 0.49 -1.02E+00 5.86E-05 0.001192517 myb_family_transcription_expressed PH01001991G0310 14.80 14.60 17.71 11.13 4.51 7.58 0.49 -1.02E+00 1.62E-04 0.002830464 myb_family_transcription_expressed PH01000332G0140 31.21 49.94 33.97 27.19 17.52 16.87 0.53 -9.03E-01 1.55E-04 0.00273222 myb_protein PH01003904G0140 2.94 3.52 2.92 2.21 1.82 1.98 0.64 -6.44E-01 4.98E-04 0.007245917 eto1-like_protein_expressed PH01000855G0150 15.54 15.99 14.07 9.83 11.23 9.02 0.66 -6.00E-01 3.88E-04 0.005862933 manganese_transport_protein PH01007129G0030 10.35 10.66 12.49 18.22 14.54 18.24 1.52 6.07E-01 3.13E-04 0.004939502 clavata1_receptor_kinase PH01000299G0380 71.45 63.02 71.75 88.02 122.93 112.89 1.57 6.51E-01 9.79E-05 0.001841305 cytosolic_monodehydroascorbate_reductase PH01001102G0050 57.32 42.50 59.48 82.57 81.40 91.29 1.60 6.80E-01 6.04E-05 0.001224614 erebp_transcription_factor PH01001489G0540 30.71 31.31 21.95 55.00 42.33 43.43 1.68 7.45E-01 1.06E-04 0.001974635 ap2_domain_containing_protein PH01000502G0670 10.54 13.36 15.29 23.64 24.96 19.90 1.75 8.06E-01 9.07E-06 0.000234506 Os05g0539800 PH01001704G0270 71.56 94.31 90.82 164.15 123.93 162.13 1.75 8.11E-01 7.02E-06 0.000187431 erebp_transcription_factor PH01000794G0200 10.17 15.66 15.15 22.48 22.95 26.61 1.76 8.14E-01 1.66E-05 0.000396575 receptor_protein_kinase_perk1-like_protein PH01000000G2120 2.17 3.45 2.76 5.90 4.82 4.47 1.81 8.58E-01 1.87E-04 0.003196231 1-aminocyclopropane-1-carboxylate_synthase PH01000115G0470 3.36 4.68 3.89 8.44 7.33 5.98 1.82 8.66E-01 1.73E-04 0.002985313 ap2_domain_containing_expressed PH01002604G0290 36.78 34.57 31.75 68.99 52.22 67.10 1.83 8.69E-01 6.88E-07 2.38347E-05 ethylene-responsive_element_binding_factor PH01000306G0540 4.63 5.80 4.34 8.82 8.53 9.94 1.85 8.86E-01 1.62E-05 0.000387824 nnja2_orysj_ame:_full=ninja-family_protein_os07g0602900 PH01000018G0790 25.12 14.34 18.67 39.91 32.06 36.88 1.87 9.05E-01 8.62E-06 0.000224477 ethylene_responsive_protein PH01001925G0330 42.39 42.85 39.03 79.12 73.43 80.75 1.88 9.09E-01 7.54E-09 3.79813E-07 myb_protein PH01000059G0730 3.50 3.46 4.20 6.06 7.89 7.07 1.88 9.14E-01 9.43E-06 0.000242501 mitogen-activated_protein_expressed PH01000180G1380 26.25 34.58 32.04 64.31 57.39 53.70 1.89 9.17E-01 6.95E-08 2.91969E-06 leucine_rich_repeat_family_expressed PH01004435G0130 6.14 4.79 5.37 11.25 11.25 8.62 1.91 9.33E-01 4.17E-06 0.000118903 ap2_domain_containing_protein PH01000176G0540 15.29 12.68 14.13 26.10 26.10 33.44 2.03 1.02E+00 1.71E-09 9.61402E-08 auxin_response_factor_partial PH01000051G1910 69.43 70.83 75.35 130.01 145.79 166.10 2.05 1.04E+00 1.20E-10 7.9916E-09 udp-glucose:_flavonoid_7-o-glucosyltransferase PH01000367G0530 169.69 67.10 116.27 333.76 200.31 199.26 2.08 1.05E+00 2.31E-04 0.003826305 pathogenesis-related_protein PH01002571G0300 4.02 3.73 7.67 9.17 9.57 13.38 2.08 1.06E+00 1.47E-04 0.002606185 ap2_domain_containing_expressed PH01004791G0030 20.73 30.86 24.23 60.18 41.83 57.77 2.11 1.08E+00 1.27E-07 5.08736E-06 ap2-domain_dre_binding_factor_dbf1 PH01000668G0390 6.28 5.31 4.00 9.97 10.06 13.34 2.14 1.10E+00 5.04E-06 0.000139688 dre_binding_factor_2 PH01000588G0680 6.50 4.73 5.91 10.02 13.56 13.85 2.18 1.13E+00 4.09E-08 1.7953E-06 ipcs_orysj_ame:_full=phosphatidylinositol:ceramide_inositolphosphotransferase_ame:_full=inositol-phosphorylceramide_synthase_short=ipc_synthase_ame:_full=protein_enhancing_rpw8-mediated_hr-like_cell_death_1_ame:_full=sphingolipid_synthase PH01000158G0210 45.68 33.49 42.32 99.70 78.23 98.67 2.28 1.19E+00 4.73E-11 3.35457E-09 zim_motif_family_expressed PH01000038G0910 25.92 29.68 30.87 70.19 64.40 63.62 2.29 1.20E+00 1.16E-13 1.21081E-11 ap2_domain_containing_expressed PH01000038G0930 85.15 110.82 115.93 263.66 228.06 241.12 2.35 1.23E+00 1.11E-12 9.90133E-11 ap2_domain_containing_expressed PH01001112G0620 49.24 44.69 37.74 107.98 104.45 108.04 2.43 1.28E+00 1.39E-14 1.62946E-12 ethylene_responsive_element_binding_factor3 PH01005673G0050 1.88 2.32 3.10 5.60 6.54 5.67 2.44 1.29E+00 2.47E-11 1.84161E-09 ethylene_receptor PH01026494G0010 1.89 1.80 2.21 6.24 3.78 4.42 2.45 1.29E+00 5.33E-05 0.001102264 erebp_transcription_factor PH01001622G0290 39.35 27.76 31.27 76.63 74.25 94.98 2.50 1.32E+00 6.45E-13 6.02601E-11 tuber-specific_and_sucrose-responsive_element_binding_factor PH01000735G0110 71.10 68.40 70.31 172.31 151.42 201.70 2.50 1.32E+00 3.03E-15 3.85791E-13 wrky_transcription_factor PH01000717G0260 12.58 14.35 11.05 35.60 32.06 30.94 2.60 1.38E+00 2.34E-15 3.0283E-13 tpa:_auxin_efflux_carrier PH01000032G1740 58.07 45.28 34.74 130.84 111.91 121.16 2.64 1.40E+00 1.68E-12 1.46099E-10 ap2_domain_containing_protein PH01000084G1170 7.97 10.49 5.28 22.02 20.04 21.26 2.67 1.42E+00 4.57E-10 2.78258E-08 pti6_-like PH01005961G0010 1.63 2.60 3.56 6.19 9.05 5.90 2.72 1.44E+00 6.10E-06 0.000165659 wrky_dna_binding_domain_containing_expressed PH01000171G0880 0.84 0.89 2.26 5.25 3.06 3.41 2.94 1.56E+00 8.59E-05 0.001663883 ap2_domain_containing_expressed PH01000114G0050 4.53 3.62 5.76 11.91 13.57 16.71 3.03 1.60E+00 1.13E-15 1.51019E-13 auxin_response_factor_7a PH01000573G0640 9.78 9.24 9.03 34.68 24.79 28.39 3.13 1.65E+00 2.06E-17 3.34522E-15 pti6_-like PH01000890G0360 16.15 14.38 11.55 55.68 39.02 50.20 3.44 1.78E+00 1.16E-18 2.11292E-16 pti6_-like PH01001360G0530 8.59 7.29 3.39 26.61 22.68 23.65 3.79 1.92E+00 1.06E-12 9.58531E-11 ap2-domain_dre_binding_factor_dbf1 PH01001112G0650 5.21 4.21 3.31 17.89 12.58 19.06 3.89 1.96E+00 3.58E-14 4.02422E-12 frizzy_partial PH01007432G0010 4.23 3.98 4.71 17.44 12.28 21.47 3.96 1.99E+00 7.30E-16 1.00052E-13 ap2_domain_containing_expressed PH01001318G0180 0.54 0.65 0.41 1.61 2.55 2.71 4.28 2.10E+00 1.95E-10 1.27338E-08 cytochrome_p450 PH01004757G0020 10.90 12.14 11.06 70.15 60.67 91.96 6.53 2.71E+00 1.42E-31 7.71343E-29 ---NA--- PH01000376G0720 0.11 0.00 0.20 0.72 1.29 0.63 8.47 3.08E+00 8.21E-07 2.78913E-05 4_protein PH01000337G0770 4.59 0.58 3.82 72.21 8.62 1.88 9.20 3.20E+00 5.17E-04 0.007471962 pathogenesis-related_protein PH01001205G0030 0.10 0.00 0.31 4.79 7.68 11.73 59.50 5.89E+00 1.55E-25 5.12619E-23 dre_binding_factor_2 PH01001042G0220 0.00 0.00 0.00 0.58 0.25 0.00 NA NA 2.84E-04 0.004558437 cytochrome_p450 PH01186769G0010 0.00 0.00 0.00 0.76 0.52 0.95 NA NA 1.70E-05 0.000404579 ---NA---