Table 14. Expression of PhARF family members in response to auxin treatment Name Gene Name Mock_repeat1 Mock_repeat2 Mock_repeat3 treatment_repeat1 treatment_repeat2 treatment_repeat3 fold_change log2fold_change pvalue FDR BriefDescription PhARF9 PH01000093G0670 33.93 27.59 33.02 16.90 13.63 20.55 0.54 -0.89 3.33E-06 9.80E-05 auxin_response_factor_partial PhARF24 PH01000626G0040 33.31 34.03 35.61 23.56 27.22 29.67 0.78 -0.36 3.35E-02 1.89E-01 auxin_response_factor_expressed PhARF25 PH01000667G0020 14.88 13.67 13.78 11.43 10.71 11.47 0.79 -0.33 4.95E-02 2.46E-01 auxin_response_factor_expressed PhARF18 PH01000277G0820 4.99 4.83 5.21 4.41 3.75 3.84 0.80 -0.33 9.84E-02 3.82E-01 auxin_response_factor_expressed PhARF15 PH01000227G0020 10.62 9.55 10.90 8.20 8.11 9.16 0.82 -0.29 9.53E-02 3.74E-01 auxin_response_factor_partial PhARF38 PH01003096G0200 0.56 0.41 0.56 0.62 0.35 0.33 0.85 -0.23 5.70E-01 9.54E-01 auxin_response_factor_7a PhARF37 PH01002857G0060 14.75 14.18 14.36 12.14 12.92 12.54 0.87 -0.20 2.32E-01 6.30E-01 auxin_response_factor_expressed PhARF29 PH01001555G0390 56.17 40.73 59.62 43.35 40.38 52.86 0.87 -0.20 3.39E-01 7.59E-01 auxin_response_factor_partial PhARF13 PH01000183G0570 4.01 4.11 5.12 3.83 3.79 4.30 0.90 -0.15 4.47E-01 8.64E-01 auxin_response_factor_partial PhARF17 PH01000259G1120 23.06 22.93 26.91 19.20 21.72 25.43 0.91 -0.14 4.72E-01 8.86E-01 auxin_response_factor_partial PhARF23 PH01000623G0440 20.74 17.81 23.61 19.56 16.08 22.33 0.93 -0.10 6.49E-01 1.00E+00 auxin_response_factor_partial PhARF19 PH01000305G0690 4.50 5.69 4.62 4.02 5.06 4.77 0.94 -0.10 6.82E-01 1.00E+00 auxin_response_factor_10 PhARF35 PH01002806G0200 2.11 2.17 2.34 2.20 1.98 2.06 0.94 -0.09 7.43E-01 1.00E+00 auxin_response_factor_expressed PhARF11 PH01000116G0910 6.96 7.17 7.45 6.45 6.78 7.38 0.95 -0.07 7.56E-01 1.00E+00 auxin_response_factor_expressed PhARF27 PH01001026G0300 6.15 5.11 5.23 5.13 5.38 5.92 1.00 -0.01 9.65E-01 1.00E+00 auxin_response_factor_10 PhARF4 PH01000018G0940 2.54 3.09 2.08 2.83 2.35 2.56 1.00 0.01 9.21E-01 1.00E+00 auxin_response_factor_expressed PhARF8 PH01000087G1340 3.01 4.25 3.72 3.42 3.72 4.25 1.04 0.05 7.16E-01 1.00E+00 auxin_response_factor_partial PhARF20 PH01000384G0170 5.67 5.43 7.30 6.20 6.06 6.97 1.04 0.06 6.63E-01 1.00E+00 auxin_response_factor_expressed PhARF41 PH01007612G0010 15.75 12.87 16.65 16.13 15.42 17.82 1.09 0.12 4.07E-01 8.24E-01 auxin_response_factor_expressed PhARF7 PH01000057G1420 0.96 0.14 0.40 0.61 0.42 0.61 1.09 0.13 7.97E-01 1.00E+00 auxin_response_factor_7a PhARF22 PH01000548G0300 5.78 4.74 7.40 6.37 7.17 6.39 1.11 0.15 3.67E-01 7.87E-01 auxin_response_factor_7a PhARF33 PH01002498G0280 3.51 2.92 3.06 2.94 4.34 3.40 1.13 0.17 3.92E-01 8.12E-01 auxin_response_factor_10 PhARF21 PH01000483G0220 24.02 22.95 24.61 26.66 25.09 29.27 1.13 0.18 2.17E-01 6.05E-01 auxin_response_factor_partial PhARF36 PH01002850G0020 0.26 0.20 0.24 0.36 0.26 0.17 1.13 0.18 7.94E-01 1.00E+00 auxin_response_factor_expressed PhARF14 PH01000222G0180 11.64 11.41 13.10 14.71 12.48 15.82 1.19 0.25 1.15E-01 4.21E-01 auxin_response_factor_expressed PhARF39 PH01003631G0130 18.55 16.30 19.06 19.61 22.53 26.69 1.28 0.35 3.15E-02 1.81E-01 auxin_response_factor_expressed PhARF1 PH01000002G3110 14.13 11.55 13.47 15.22 16.14 19.56 1.30 0.38 2.14E-02 1.38E-01 auxin_response_factor_expressed PhARF32 PH01002160G0180 9.59 7.54 9.46 9.28 12.91 14.73 1.39 0.47 1.25E-02 9.41E-02 auxin_response_factor_expressed PhARF31 PH01001899G0250 8.84 11.26 10.32 15.03 11.73 16.54 1.42 0.51 4.78E-03 4.52E-02 auxin_response_factor_partial PhARF30 PH01001690G0310 5.43 4.04 4.88 7.98 5.61 6.98 1.43 0.52 6.99E-03 6.07E-02 auxin_response_factor_expressed PhARF16 PH01000237G0420 0.56 0.93 0.60 1.18 1.22 0.82 1.54 0.63 5.91E-02 2.77E-01 ettin_protein PhARF6 PH01000046G0220 11.21 9.61 10.35 18.75 13.85 16.27 1.57 0.65 1.75E-04 3.02E-03 ettin_protein PhARF26 PH01000845G0410 0.09 0.10 0.05 0.11 0.17 0.12 1.60 0.68 1.31E-01 4.55E-01 auxin_response_factor_10 PhARF5 PH01000044G0540 0.49 0.22 0.47 0.94 0.61 0.33 1.61 0.69 1.56E-01 5.03E-01 auxin_response_factor_10 PhARF28 PH01001285G0430 7.44 5.99 5.77 10.93 9.86 11.23 1.67 0.74 1.89E-05 4.45E-04 auxin_response_factor_10 PhARF34 PH01002685G0120 9.13 13.29 9.34 22.42 15.06 18.83 1.77 0.83 6.17E-05 1.24E-03 auxin_response_factor_10 PhARF12 PH01000176G0540 15.29 12.68 14.13 26.10 26.10 33.44 2.03 1.02 1.71E-09 9.61E-08 auxin_response_factor_partial PhARF2 PH01000011G0660 0.00 0.00 0.04 0.00 0.06 0.03 2.28 1.19 6.38E-01 9.98E-01 auxin_response_factor_partial PhARF40 PH01005322G0010 19.74 23.58 26.41 45.69 59.87 60.39 2.38 1.25 1.87E-12 1.60E-10 auxin_response_factor_expressed PhARF3 PH01000014G0610 6.49 9.43 12.27 21.45 25.29 26.05 2.58 1.37 9.54E-11 6.50E-09 auxin_response_factor_partial PhARF10 PH01000114G0050 4.53 3.62 5.76 11.91 13.57 16.71 3.03 1.60 1.13E-15 1.51E-13 auxin_response_factor_7a