Cloacal swab cell counts on L. reuteri isolation medium (Fig. S1); relative abundances of bacteria of interest for all treatments and for responders and nonresponders (Fig. S2); correlations to the driver peak at 5 ppm (Fig. S3); strains used in in vivo probiotic selection experiments (Table S1); weight gain in broilers (Table S2); multiplex primer mix (Table S3); distribution of five gene phasotypes between control and vaccinated challenge groups (Table S4); multivariate analysis parameters, list of PCs for PCA and PLS-DA, and classification and fit measurements Q2 and R2 (Table S5); metabolite database matching using COLMARm and ASSURE NMR (Table S6).
PDF, 288K