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{"sheet":"GhNPC cis-elements","index":0,"n_rows":68,"n_cols":13,"rows_kept":68,"cut":false,"hidden":false,"merged":[[0,2,0,12],[0,0,1,0],[16,0,17,0],[0,1,1,1]]}
["Cis-elements","Annotation of cis-elements","Number of cis-elements"]
[null,null,"GhNPC1a","GhNPC1b","GhNPC2a","GhNPC2b","GhNPC3a","GhNPC3b","GhNPC4","GhNPC6a","GhNPC6b","GhNPC6c","GhNPC6d"]
["ABRE","cis-acting element involved in the abscisic acid responsiveness",1,1,2,null,7,1,null,1,1]
[" CE3","cis-acting element involved in ABA and VP1 responsiveness",1,1]
["TGACG-motif","cis-acting regulatory element involved in the MeJA-responsiveness",2,1,null,null,1,2]
["CGTCA-motif","cis-acting regulatory element involved in the MeJA-responsiveness",2,1,null,null,1,2]
[" ERE","ethylene-responsive element",1,null,null,null,1,null,1,null,null,1]
["GARE-motif","gibberellin-responsive element",1,1,1,1,1,{"$nulls":4},1]
[" TATC-box","cis-acting element involved in gibberellin-responsiveness",null,null,2,2]
["TCA-element","cis-acting element involved in salicylic acid responsiveness",1,1,null,2,null,null,null,1,2,2,2]
["AuxRR-core","cis-acting regulatory element involved in auxin responsiveness",{"$nulls":4},1]
["TGA-element","auxin-responsive element",{"$nulls":4},1]
[]
["TC-rich repeats","cis-acting element involved in defense and stress responsiveness",null,null,null,2,1,1,2,1,1,1,1]
["HSE","cis-acting element involved in heat stress responsiveness",1,5,null,3,2,3,2,5,1,3,4]
["LTR","cis-acting element involved in low-temperature responsiveness",3,3,null,null,1,null,null,1,1]
["MBS","MYB binding site involved in drought-inducibility",3,1,1,1,1,null,null,1,null,null,1]
[null,"MYB Binding Site",1,null,null,null,1]
[" MBSII","MYB binding site involved in flavonoid biosynthetic genes regulation",{"$nulls":10},1]
["CCAAT-box","MYBHv1 binding site",1,1]
["ARE","cis-acting regulatory element essential for the anaerobic induction",1,null,1,1,4,1,1,1,1,3,1]
["WUN-motif","wound-responsive element",null,null,null,1]
[" Box-W1","fungal elicitor responsive element",3,1,null,null,2]
[]
["Skn-1_motif","cis-acting regulatory element required for endosperm expression",2,3,3,4,3,3,2,null,null,4,3]
["GCN4_motif","cis-regulatory element involved in endosperm expression",null,null,1,null,4,{"$nulls":4},1,1]
["HD-Zip 1","element involved in differentiation of the palisade mesophyll cells",{"$nulls":4},1]
["HD-Zip 2","element involved in the control of leaf morphology development",{"$nulls":4},1]
["CAT-box","cis-acting regulatory element related to meristem expression",{"$nulls":4},1,{"$nulls":4},1,1]
["O2-site","cis-acting regulatory element involved in zein metabolism regulation",{"$nulls":4},1,1]
["circadian","cis-acting regulatory element involved in circadian control",3,3,6,1,1,2,2,1,1]
["as-2-box","involved in shoot-specific expression and light responsiveness",{"$nulls":5},2,1,null,null,1,2]
[]
["AE-box","part of a module for light response",{"$nulls":4},1,1]
["ATCT-motif","part of a conserved DNA module involved in light responsiveness",1,1,3,null,1,null,null,1,2,2,1]
["Box 4","part of a conserved DNA module involved in light responsiveness",2,2,2,3,2,6,2," ",2,4,3]
["Box I","light responsive element",1,2,1,1,1,null,2,null,null,3,3]
["CATT-motif","part of a light responsive element",{"$nulls":4},3,{"$nulls":4},2,2]
[" G-Box","cis-acting regulatory element involved in light responsiveness",null,null,1,null,1,2,1,1,1]
["G-box","cis-acting regulatory element involved in light responsiveness",1,1,1,null,7,4,null,1,1]
["GAG-motif","part of a light responsive element",2,1,2,3,1,1,1,null,1]
[" GATA-motif","part of a light responsive element",1,1,2,4,1,null,2]
["Pc-CMA2c","part of a light responsive element",{"$nulls":4},1]
["TCT-motif","part of a light responsive element",2,null,null,null,1,2,null,1,1,null,1]
[" AAAC-motif","light responsive element",{"$nulls":5},1]
["ACE","cis-acting element involved in light responsiveness",null,1,null,null,null,1,1]
["GA-motif","part of a light responsive element",null,null,null,1,null,2,null,null,null,1]
[" I-box","part of a light responsive element",1,1,6,1,null,2,2,null,null,1,1]
["LAMP-element","part of a light responsive element",{"$nulls":5},1,1,null,1]
["Sp1","light responsive element",{"$nulls":5},3,3]
["3-AF1 binding site","light responsive element",null,1,{"$nulls":8},2]
["GT1-motif","light responsive element",1,1,1,4,null,null,3,1,1,1,1]
["MRE","MYB binding site involved in light responsiveness",1,1,null,1,null,null,1,null,null,1,1]
["chs-CMA1a","part of a light responsive element",1,{"$nulls":8},2,1]
["ATC-motif","part of a conserved DNA module involved in light responsiveness",null,null,1,1]
["Gap-box","part of a light responsive element",null,null,1]
["MNF1","light responsive element",null,null,1]
["AT1-motif","part of a light responsive module",{"$nulls":6},1,null,1,1]
["TCCC-motif","part of a light responsive element",1]
["Box II","part of a light responsive element",{"$nulls":5},1]
[" Nodule-site2","nodule specific factor binding site",{"$nulls":9},1,1]
[" TATCCAT/C-motif",null,1,1,1,null,null,null,1]
["W box",null,3,1]
[" E2Fa",null,null,null,1]
["TCCACCT-motif",null,null,null,2,1]
["Box III","protein binding site",{"$nulls":6},1,2,1]
["AAGAA-motif",null,1,1,null,1,null,2,1,null,2,null,1]
["F-box",{"$nulls":10},1]

{"sheet":"GrNPC cis-elements","index":1,"n_rows":71,"n_cols":8,"rows_kept":71,"cut":false,"hidden":false,"merged":[[0,2,0,7],[0,0,1,0],[0,1,1,1]]}
["Cis-elements","Annotation of cis-elements","Number of cis-elements"]
[null,null,"GrNPC1","GrNPC2","GrNPC3","GrNPC4","GrNPC6a","GrNPC6d"]
["ABRE","cis-acting element involved in the abscisic acid responsiveness",1,null,1,1,2]
[" CE3","cis-acting element involved in ABA and VP1 responsiveness",1]
["TGACG-motif","cis-acting regulatory element involved in the MeJA-responsiveness",2,null,1]
["CGTCA-motif","cis-acting regulatory element involved in the MeJA-responsiveness",2,null,1]
[" ERE","ethylene-responsive element",1,null,1,2,null,1]
["GARE-motif","gibberellin-responsive element",1,null,1,1,null,1]
["TCA-element","cis-acting element involved in salicylic acid responsiveness",2,1,null,1,1]
["AuxRR-core","cis-acting regulatory element involved in auxin responsiveness",{"$nulls":4},1]
["TGA-element","auxin-responsive element",null,1,null,null,1]
[]
["TC-rich repeats","cis-acting element involved in defense and stress responsiveness",1,1,null,4,2,1]
["HSE","cis-acting element involved in heat stress responsiveness",1,1,2,3,2,3]
["LTR","cis-acting element involved in low-temperature responsiveness",1,null,null,3,1]
["MBS","MYB binding site involved in drought-inducibility",3,null,3,null,null,1]
[" MBSII","MYB binding site involved in flavonoid biosynthetic genes regulation",{"$nulls":5},1]
["ARE","cis-acting regulatory element essential for the anaerobic induction",null,null,3,4,1,2]
["WUN-motif","wound-responsive element",{"$nulls":4},1]
[" Box-W1","fungal elicitor responsive element",2]
["ELI-box3","elicitor-responsive element",{"$nulls":4},1]
["AT-rich sequence","element for maximal elicitor-mediated activation (2copies)",null,null,1]
[]
["Skn-1_motif","cis-acting regulatory element required for endosperm expression",2,9,4,2,null,2]
["GCN4_motif","cis-regulatory element involved in endosperm expression",null,1,1]
["CAT-box","cis-acting regulatory element related to meristem expression",null,null,1]
["O2-site","cis-acting regulatory element involved in zein metabolism regulation",null,null,2]
["circadian","cis-acting regulatory element involved in circadian control",3,null,null,1,1]
["as-2-box","involved in shoot-specific expression and light responsiveness",null,null,null,2,null,1]
[]
["AE-box","part of a module for light response",null,null,1]
["ATCT-motif","part of a conserved DNA module involved in light responsiveness",1,null,2,2,1,1]
["Box 4","part of a conserved DNA module involved in light responsiveness",3,8,null,2,6,4]
["Box I","light responsive element",1,1,3,3,null,3]
["CATT-motif","part of a light responsive element",1,{"$nulls":4},1]
[" G-Box","cis-acting regulatory element involved in light responsiveness",null,null,1,3,4]
["G-box","cis-acting regulatory element involved in light responsiveness",1,1,3,3,3]
["GAG-motif","part of a light responsive element",1,null,1,1,1]
[" GATA-motif","part of a light responsive element",1,null,null,1,1]
["TCT-motif","part of a light responsive element",1,{"$nulls":4},1]
[" AAAC-motif","light responsive element",null,null,1]
["ACE","cis-acting element involved in light responsiveness",1,null,null,1]
["GA-motif","part of a light responsive element",null,null,null,1]
[" I-box","part of a light responsive element",5,null,2,null,1]
["Sp1","light responsive element",null,null,2]
["3-AF1 binding site","light responsive element",{"$nulls":4},1,2]
["GT1-motif","light responsive element",3,1,1,3,1,2]
["MRE","MYB binding site involved in light responsiveness",1,{"$nulls":4},1]
["chs-CMA1a","part of a light responsive element",1,null,1,null,null,1]
["ATC-motif","part of a conserved DNA module involved in light responsiveness",null,1]
["Gap-box","part of a light responsive element",null,1,1]
["AT1-motif","part of a light responsive module",{"$nulls":4},1,1]
["TCCC-motif","part of a light responsive element",1]
["rbcS-CMA7a","part of a light responsive element",1]
["3-AF1 binding site","light responsive element",null,1]
[]
[" Nodule-site2","nodule specific factor binding site",{"$nulls":5},1]
[" TATCCAT/C-motif",null,1,null,null,1]
["W box",null,2]
["TCCACCT-motif",null,null,null,1]
["Box III","protein binding site",{"$nulls":4},1]
["AAGAA-motif",{"$nulls":5},1]
["HD-Zip 3","protein binding site",null,null,1]
[" AC-II",{"$nulls":4},1]
["LS7",{"$nulls":6},1]
["5UTR Py-rich stretch","cis-acting element conferring high transcription levels",2,null,null,1,1]
["AT-rich element","binding site of AT-rich DNA binding protein (ATBP-1)",null,null,1]
[]
["ATGCAAAT motif","cis-acting regulatory element associated to the TGAGTCA motif",null,null,1]
["CTAG-motif",{"$nulls":5},1]
["AC-I",null,null,1]

{"sheet":"GaNPC cis-elements","index":2,"n_rows":67,"n_cols":9,"rows_kept":67,"cut":false,"hidden":false,"merged":[[0,2,0,8],[0,0,1,0],[16,0,17,0],[0,1,1,1]]}
["Cis-elements","Annotation of cis-elements","Number of cis-elements"]
[null,null,"GaNPC1a","GaNPC1b","GaNPC2","GaNPC3","GaNPC4","GaNPC6a","GaNPC6b"]
["ABRE","cis-acting element involved in the abscisic acid responsiveness",1,null,null,1,1,1]
[" CE3","cis-acting element involved in ABA and VP1 responsiveness",1]
["TGACG-motif","cis-acting regulatory element involved in the MeJA-responsiveness",1]
["CGTCA-motif","cis-acting regulatory element involved in the MeJA-responsiveness",1]
[" ERE","ethylene-responsive element",1,1,null,null,2,null,1]
["GARE-motif","gibberellin-responsive element",null,1,1,1,2,null,1]
[" TATC-box","cis-acting element involved in gibberellin-responsiveness",null,null,2]
["TCA-element","cis-acting element involved in salicylic acid responsiveness",3,3,3,null,2,2,2]
["AuxRR-core","cis-acting regulatory element involved in auxin responsiveness",{"$nulls":5},1]
["TGA-element","auxin-responsive element",1,1]
[]
["TC-rich repeats","cis-acting element involved in defense and stress responsiveness",null,null,3,null,4,1,2]
["HSE","cis-acting element involved in heat stress responsiveness",8,1,4,2,4,5,1]
["LTR","cis-acting element involved in low-temperature responsiveness",1,1,null,null,2,1]
["MBS","MYB binding site involved in drought-inducibility",1,2,null,1,2,1,2]
[null,"MYB Binding Site",null,1]
["CCAAT-box","MYBHv1 binding site",1,1]
["ARE","cis-acting regulatory element essential for the anaerobic induction",null,2,1,2,5,2,4]
[" Box-W1","fungal elicitor responsive element",1,4]
["AT-rich sequence","element for maximal elicitor-mediated activation (2copies)",null,null,null,1,null,1]
["ELI-box3","elicitor-responsive element",{"$nulls":5},1]
[]
["Skn-1_motif","cis-acting regulatory element required for endosperm expression",3,3,4,3,2,null,2]
["GCN4_motif","cis-regulatory element involved in endosperm expression",null,null,null,2]
["HD-Zip 1","element involved in differentiation of the palisade mesophyll cells",{"$nulls":5},1]
["HD-Zip 2","element involved in the control of leaf morphology development",null,null,1,null,null,1]
["CAT-box","cis-acting regulatory element related to meristem expression",null,null,null,1,2,null,1]
["O2-site","cis-acting regulatory element involved in zein metabolism regulation",null,null,null,2]
["circadian","cis-acting regulatory element involved in circadian control",2,5,1,4,1,1]
["as-2-box","involved in shoot-specific expression and light responsiveness",{"$nulls":4},3,null,1]
[]
["AE-box","part of a module for light response",1,1,1,1]
["ATCT-motif","part of a conserved DNA module involved in light responsiveness",1,2,null,2,null,2,1]
["Box 4","part of a conserved DNA module involved in light responsiveness",4,2,3,1,1,3,4]
["Box I","light responsive element",1,2,null,null,3,null,3]
[" G-Box","cis-acting regulatory element involved in light responsiveness",null,null,null,1,2,2]
["G-box","cis-acting regulatory element involved in light responsiveness",1,null,null,2,2,2]
["GAG-motif","part of a light responsive element",1,1,3,1]
[" GATA-motif","part of a light responsive element",2,null,5,null,1]
["TCT-motif","part of a light responsive element",null,null,null,1,2,1]
[" AAAC-motif","light responsive element",null,null,null,1]
["ACE","cis-acting element involved in light responsiveness",1,1,null,null,1]
["GA-motif","part of a light responsive element",null,null,1,null,1]
[" I-box","part of a light responsive element",2,5,1,null,1]
["Sp1","light responsive element",null,null,null,2]
["3-AF1 binding site","light responsive element",1,1]
["GT1-motif","light responsive element",1,3,2,1,4,1,1]
["MRE","MYB binding site involved in light responsiveness",1,{"$nulls":5},1]
["chs-CMA1a","part of a light responsive element",null,null,null,1,1,null,1]
["chs-CMA2a",{"$nulls":4},1]
["ATC-motif","part of a conserved DNA module involved in light responsiveness",null,null,1]
["AT1-motif","part of a light responsive module",{"$nulls":5},1,1]
["TCCC-motif","part of a light responsive element",1,1,1]
["rbcS-CMA7a","part of a light responsive element",null,1,null,null,null,1]
[]
[" TATCCAT/C-motif",null,null,2,1,null,1]
["W box",null,1,4]
["TCCACCT-motif",{"$nulls":4},1]
["Box III","protein binding site",null,null,1,1,null,2]
["AAGAA-motif",null,null,null,1,null,2,2]
[" AC-II",{"$nulls":5},1]
["F-box",{"$nulls":7},1]
["AT-rich element","binding site of AT-rich DNA binding protein (ATBP-1)",null,null,null,1]
["5UTR Py-rich stretch","cis-acting element conferring high transcription levels",1,null,2,3,1,null,1]
["CTAG-motif",{"$nulls":6},1]