CDS/rRNA/tRNA/Intergenic,strand,CDS_name,product,Synonymous/Non-synonymous ,Ref_base,SNP_base,Patient,BAPS
CDS,-1,19789_7#3_00425,"TraG/TraD family protein,conjugal transfer coupling protein TraG,Type IV secretory pathway, VirD4 components,Ti-type conjugative transfer system protein TraG,Type IV secretory system Conjugative DNA transfer",N,G,A,D,4
CDS,-1,tagA,"glycosyl transferase, WecB/TagA/CpsF family,Putative N-acetylmannosaminyltransferase,putative UDP-N-acetyl-D-mannosaminuronic acid transferase,glycosyltransferase, WecB/TagA/CpsF family,Glycosyl transferase WecB/TagA/CpsF family",S,G,A,D,4
CDS,-1,clpC,"negative regulator of genetic competence ClpC/MecB,Negative regulator of genetic competence ClpC/MecB,protein disaggregation chaperone,Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains,ATP-dependent chaperone protein ClpB,AAA domain (Cdc48 subfamily)",N,G,A,D,4
Intergenic,-,-,-,-,A,G,D,4
CDS,-1,19789_7#3_01671,"helix-turn-helix domain-containing protein,Mga helix-turn-helix domain",N,G,C,D,4
CDS,1,19789_7#3_01939,"membrane protein,Domain of unknown function (DUF368)",S,C,G,D,4
CDS,1,rsmB,"Ribosomal RNA small subunit methyltransferase B,Ribosomal RNA small subunit methyltransferase B,16S rRNA methyltransferase B,tRNA and rRNA cytosine-C5-methylases,ribosomal RNA small subunit methyltransferase B,NOL1/NOP2/sun family",N,C,T,D,4
Intergenic,-,-,-,-,A,T,D,4
CDS,1,19789_7#3_02773,Domain of unknown function (DUF1906),S,G,T,D,4
CDS,1,lacR_1,"DeoR family transcriptional regulator, lactose phosphotransferase system repressor,Lactose phosphotransferase system repressor,DNA-bindng transcriptional repressor SrlR,Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB,Bacterial regulatory proteins, deoR family",N,A,T,C,3
Intergenic,-,-,-,-,A,G,C,3
CDS,-1,19789_6#99_00562,"DNA polymerase III subunit delta,DNA polymerase III subunit delta,DNA polymerase III, delta subunit,DNA polymerase III, delta subunit",N,T,C,C,3
CDS,-1,idhA,"oxidoreductase family, NAD-binding Rossmann fold protein,Inositol 2-dehydrogenase,putative oxidoreductase,Oxidoreductase family, C-terminal alpha/beta domain",S,T,C,C,3
CDS,-1,tpiA,"triosephosphate isomerase,Triosephosphate isomerase,triosephosphate isomerase,triose-phosphate isomerase,Triosephosphate isomerase",N,C,T,C,3
CDS,-1,cwlC,"N-acetylmuramoyl-L-alanine amidase,Sporulation-specific N-acetylmuramoyl-L-alanine amidase,N-acetylmuramoyl-l-alanine amidase I,N-acetylmuramoyl-L-alanine amidase CwlD,N-acetylmuramoyl-L-alanine amidase",N,G,C,C,3
CDS,1,19789_6#99_00865,"IS1380 family transposase,Transposase DDE domain",N,G,T,C,3
Intergenic,-,-,-,-,C,T,C,3
CDS,-1,arcD,"arginine/ornithine APC family amino acid-polyamine-organocation transporter, antiporter,Arginine/ornithine antiporter,arginine:agmatin antiporter,arginine-ornithine antiporter,Amino acid permease",S,G,A,C,3
CDS,1,19789_6#99_01580,"phage minor structural protein, region,Phage-related protein,phage minor structural protein, N-terminal region,Prophage endopeptidase tail",S,A,C,C,3
CDS,-1,19789_6#99_01589,"DUF1237 family protein,Uncharacterized conserved protein,Protein of unknown function (DUF1237)",S,C,T,C,3
CDS,1,lacR_2,"DeoR family transcriptional regulator,Lactose phosphotransferase system repressor,DNA-bindng transcriptional repressor SrlR,Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB,Bacterial regulatory proteins, deoR family",N,A,T,C,3
CDS,1,lacR_2,"DeoR family transcriptional regulator,Lactose phosphotransferase system repressor,DNA-bindng transcriptional repressor SrlR,Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB,Bacterial regulatory proteins, deoR family",N,G,T,C,3
CDS,1,yrdA,"Carbonic anhydrase/acetyltransferase,hypothetical protein,carnitine operon protein CaiE,Acetyltransferase (isoleucine patch superfamily),phenylacetic acid degradation protein PaaY,Bacterial transferase hexapeptide (six repeats)",N,G,A,C,3
Intergenic,-,-,-,-,C,T,C,3
Intergenic,-,-,-,-,T,C,C,3
CDS,1,rplY,"50S ribosomal protein L25, Ctc-form,50S ribosomal protein L25,50S ribosomal protein L25/general stress protein Ctc,ribosomal protein L25, Ctc-form,Ribosomal L25p family",N,T,G,C,3
CDS,1,yecD_4,"isochorismatase family hydrolase,Isochorismatase family protein yecD,putative hydrolase,Isochorismatase family",S,C,T,C,3
CDS,-1,galS,"LacI family transcriptional regulator,Mgl repressor and galactose ultrainduction factor,DNA-binding transcriptional repressor PurR,ABC-type sugar transport system, periplasmic component,catabolite control protein A,Bacterial regulatory proteins, lacI family",S,C,T,C,3
CDS,-1,cmtB,"PTS system ascorbate-specific transporter subunit IIA,Mannitol-specific cryptic phosphotransferase enzyme IIA component,putative PTS system mannitol-specific transporter subunit IIA,PTS system, fructose subfamily, IIA component,Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2",S,T,A,C,3
CDS,-1,19789_6#99_02585,hypothetical protein,N,T,C,C,3
CDS,-1,19789_6#165_01455,"NAD-dependent nucleoside-diphosphate-sugar epimerase,Uncharacterized epimerase/dehydratase SAV0553,Vi polysaccharide biosynthesis protein TviC,UDP-glucose 4-epimerase,NAD dependent epimerase/dehydratase family",N,C,A,A,1
CDS,-1,19789_6#165_01523,DNA-directed RNA polymerase beta subunit,N,C,T,A,1
CDS,-1,19789_6#165_01523,DNA-directed RNA polymerase beta subunit,S,T,C,A,1
Intergenic,-,-,-,-,A,T,B,2
CDS,-1,kojP_1,"glycoside hydrolase, family 65,Kojibiose phosphorylase,maltose phosphorylase,Trehalose and maltose hydrolases (possible phosphorylases),Glycosyl hydrolase family 65 central catalytic domain",S,C,G,B,2
Intergenic,-,-,-,-,A,C,B,2
CDS,1,yihP,"sodium/galactoside symporter,Inner membrane symporter yihP,melibiose:sodium symporter,sugar (Glycoside-Pentoside-Hexuronide) transporter,Major Facilitator Superfamily",N,G,T,B,2
CDS,1,19789_6#112_00561,"membrane spanning protein,Predicted membrane protein,DUF939 C-terminal domain",N,C,A,B,2
CDS,-1,19789_6#112_00812,"Peptidase C60 sortase,Sortase (surface protein transpeptidase),sortase,Sortase family",S,G,A,B,2
CDS,-1,csbC,"MFS transporter, sugar porter family protein,Probable metabolite transport protein CsbC,D-xylose transporter XylE,Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA),MFS transporter, sugar porter (SP) family,Sugar (and other) transporter",S,G,T,B,2
Intergenic,-,-,-,-,G,A,B,2
CDS,-1,smc,"chromosome partition protein SMC,Chromosome partition protein Smc,chromosome segregation protein,ATPase involved in DNA repair,chromosome segregation protein SMC,RecF/RecN/SMC N terminal domain",N,T,G,B,2
CDS,-1,gsiA_3,"oligopeptide/dipeptide ABC transporter, ATP-binding protein domain protein,Glutathione import ATP-binding protein GsiA,oligopeptide transporter ATP-binding component,ABC-type oligopeptide transport system, ATPase component,nickel import ATP-binding protein NikD,ABC transporter",N,T,C,B,2
CDS,1,hprK,"HPr kinase/phosphorylase,HPr kinase/phosphorylase,HPr kinase/phosphorylase,HPr(Ser) kinase/phosphatase,HPr Serine kinase C-terminal domain",S,G,T,B,2
CDS,-1,arnB_2,"glutamine--scyllo-inositol transaminase,UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase,UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase,Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis,UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase,DegT/DnrJ/EryC1/StrS aminotransferase family",S,C,T,B,2
CDS,1,yitT,"YitT family protein,Uncharacterized BCR, YitT family COG1284",S,A,G,B,2
CDS,1,19789_6#112_01385,"Snf2 family protein,ATP-dependent helicase HepA,N-formylmethionyl-tRNA deformylase,Bacterial SNF2 helicase associated",N,C,T,B,2
Intergenic,-,-,-,-,T,C,B,2
CDS,-1,pcrA_2,"ATP-dependent DNA helicase PcrA,Putative ATP-dependent DNA helicase yjcD,DNA-dependent helicase II,Superfamily I DNA and RNA helicases,ATP-dependent DNA helicase PcrA,UvrD/REP helicase",S,T,C,B,2
Intergenic,-,-,-,-,G,T,B,2
CDS,-1,uvrB,"excinuclease ABC subunit B,hypothetical protein,excinuclease ABC subunit B,Predicted HKD family nuclease,excinuclease ABC subunit B,Ultra-violet resistance protein B",S,T,C,B,2
CDS,-1,19789_6#112_01908,"acetyltransferase,ribosomal-protein-alanine acetyltransferase,Acetyltransferase (GNAT) family",N,G,A,B,2
Intergenic,-,-,-,-,G,A,B,2
CDS,-1,metN1,"ABC transporter ATP-binding protein,Methionine import ATP-binding protein MetN,DL-methionine transporter ATP-binding subunit,ABC-type proline/glycine betaine transport system, ATPase component,D-methionine ABC transporter, ATP-binding protein,ABC transporter",N,G,T,B,2
CDS,1,pheA,"prephenate dehydratase,Prephenate dehydratase,prephenate dehydratase,Prephenate dehydrogenase,Prephenate dehydratase",N,G,A,B,2
CDS,-1,ypdC_2,"Two-component response regulator TrxR,Uncharacterized HTH-type transcriptional regulator ypdC,DNA-binding transcriptional regulator AraC,Adenosine deaminase,YSIRK-targeted surface antigen transcriptional regulator,Helix-turn-helix domain",N,T,C,B,2
CDS,1,19789_6#112_02324,"Protein of unknown function DUF1538,Protein of unknown function (DUF1538)",N,C,T,B,2
Intergenic,-,-,-,-,C,T,B,2
CDS,1,ycgJ,"methyltransferase domain protein,Uncharacterized methyltransferase ycgJ,hypothetical protein,Predicted methyltransferase (contains TPR repeat),biotin biosynthesis protein BioC,Methyltransferase domain",N,C,A,B,2
CDS,1,19789_6#112_02819,"Protein of unknown function, DUF536",N,G,T,B,2
Intergenic,-,-,-,-,C,T,B,2
Intergenic,-,-,-,-,A,G,B,2
CDS,1,19789_6#112_03026,hypothetical protein,N,A,G,B,2
CDS,1,nudF,"ADP-ribose diphosphatase,ADP-ribose pyrophosphatase,adenosine nucleotide hydrolase NudE,NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding,nudix-type nucleoside diphosphatase, YffH/AdpP family,NUDIX domain",INDEL,TTCT,T,B,2
CDS,1,yozG,"helix-turn-helix domain-containing protein,Predicted transcriptional regulator",INDEL,CAAAAAAAAA,CAAAAAAAA,B,2
CDS,-1,pepT,"peptidase T,Peptidase T,peptidase T,Metal-dependent amidase/aminoacylase/carboxypeptidase,peptidase T,Peptidase family M20/M25/M40",INDEL,TA,TATTATCACCA,D,4
CDS,1,nhaK,"Na /H  antiporter,Sodium, potassium, lithium and rubidium/H( ) antiporter,NhaP-type Na /H  and K /H antiporters,Na /H  antiporter,Sodium/hydrogen exchanger family",INDEL,ACC,ACCC,C,3
CDS,1,gnl,"MFS family major facilitator transporter,putative cyanate transporter,Arabinose efflux permease,cyanate transporter,Major Facilitator Superfamily",INDEL,GCC,GC,C,3