# New Phytologist Supporting Information : Table S1
#
# Article title: Intergenerational environmental effects: Functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion
#
# Authors: Koen J.F. Verhoeven, Eline H. Verbon, Thomas P. van Gurp, Carla Oplaat, Julie Ferreira de Carvalho, Alison M. Morse, Mark Stahl, Mirka Macel and Lauren M. McIntyre
#
# Article acceptance date: 31 August 2017
#
# Table S1. Contigs excluded from statistical analysis. Contigs in this table reach the coverage threshold (average of at least 10 reads per nucleotide) in at least one, but not in all, of the four experimental groups, and are not statistically analysed using linear models. For each of the experimental groups, expression is given as the mean value of log(RPKM) scores.
#
contigID,CC_logrpkm,CJ_logrpkm,JC_logrpkm,JJ_logrpkm
comp1297626_c0_seq1,-1.583787334,-1.087265695,-2.671414375,-2.038400197
comp13431_c0_seq1,-0.574898876,-0.263488428,-0.114751835,-0.097625895
comp139727_c0_seq1,-0.252323151,-0.478785476,-0.600854567,-0.208736525
comp210133_c0_seq1,-0.209338653,-0.158257334,-0.307839901,-0.242561971
comp239424_c0_seq1,-0.699257714,-0.449126615,-0.603585903,-0.379643758
comp245943_c0_seq1,0.0565891553,-0.023488502,0.2877674729,0.1750153356
comp254483_c0_seq1,0.0198236889,-0.303051418,0.1996487873,-0.05598416
comp27574_c0_seq1,-0.484671858,-0.314441866,-0.562611788,-0.468227844
comp27574_c0_seq2,-0.288066663,-0.106339031,-0.369711623,-0.276268786
comp27593_c0_seq1,-1.305895688,-1.286934453,-1.274404313,-1.416449187
comp27642_c0_seq1,-0.196520181,-0.641523969,-0.071473012,-0.095710987
comp27708_c0_seq1,-0.338593629,-0.375171152,-0.244412094,-0.50012369
comp27722_c0_seq1,-0.931256482,-0.37057403,-0.695348289,-0.533400534
comp27722_c0_seq2,-0.768585837,-0.250477223,-0.510574494,-0.382846692
comp27724_c0_seq1,-0.034893165,-0.343058797,-0.038337949,-0.253992394
comp27840_c0_seq1,-0.970368838,-1.557345962,-0.968291925,-1.580240708
comp27886_c0_seq1,-0.538615574,0.1725719746,-0.661931374,-0.36129112
comp27886_c0_seq2,-0.405833667,0.2780038118,-0.516457825,-0.222170461
comp27930_c0_seq1,-0.397258316,-0.298062497,-0.278215889,0.0346893293
comp27965_c0_seq1,-0.563685009,-0.579613452,-0.537788155,-0.621032155
comp27966_c0_seq1,-0.221893097,-0.40300389,0.038595759,-0.108611851
comp27999_c0_seq1,-0.708858958,-0.486281476,-0.363527519,-0.573813538
comp28073_c0_seq1,-0.298392181,-0.334947962,-0.239054004,-0.062197319
comp28155_c0_seq1,-0.336837015,-0.136748671,-0.21217941,-0.178510143
comp28156_c0_seq1,0.0262506361,-0.355048408,-0.150570868,-0.067165101
comp28244_c0_seq1,-0.58988428,-0.53575046,-0.410147224,-0.524230749
comp28388_c0_seq1,-0.32155368,-0.651882676,-0.30592213,-0.408239101
comp283974_c0_seq1,-0.590573787,-0.712977112,-0.666721461,-0.370286054
comp28437_c0_seq1,-0.16064822,-0.512413676,-0.436054411,-0.468188805
comp28478_c0_seq1,-0.270339506,-0.201103553,-0.343616746,-0.181650776
comp28568_c0_seq1,-0.267384595,-0.102080455,-0.064124406,-0.400540143
comp28627_c0_seq1,-0.199883454,-0.09655623,0.0409677945,0.0420764647
comp28720_c0_seq1,-0.860656439,-0.179685254,-1.248973928,0.0820172535
comp28743_c0_seq1,-0.383615233,-0.368518688,-0.303660751,-0.442939726
comp29028_c0_seq1,-0.633173991,-0.455766079,-0.323883993,-0.343318438
comp29159_c0_seq1,-0.271021222,-0.154100378,-0.00782334,-0.142117624
comp29431_c0_seq1,-0.526544662,-0.625301778,-0.205817879,-0.486123164
comp29500_c0_seq1,-0.419619222,-0.267756245,-0.153425453,-0.360950188
comp29704_c0_seq1,-0.770874574,-0.450004418,-0.725897017,-0.236416065
comp29751_c0_seq1,-0.771589933,-1.102939512,-0.811824794,-0.823129234
comp29758_c0_seq1,-0.56561324,-0.936292598,-0.666874395,-0.589595716
comp29873_c0_seq2,-0.894820884,-0.857490067,-0.844150567,-0.971534995
comp30325_c0_seq1,-0.416154267,-0.512551121,-0.396510475,-0.506619875
comp30441_c0_seq1,-0.946003635,-0.705190311,-0.604970297,-0.478329151
comp30539_c0_seq1,-0.515580629,-0.423516344,-0.786405978,-0.639524746
comp30539_c0_seq2,-0.415911405,-0.35362879,-0.758717133,-0.547360811
comp30717_c0_seq1,-0.480813461,-0.238180524,-0.361006662,-0.431034481
comp308445_c0_seq1,0.1282808223,0.0916390186,0.091528558,-0.226312075
comp322473_c0_seq1,-0.348593645,-0.286349726,-0.420066698,-0.290648757
comp32633_c0_seq1,-0.494164138,-0.817892921,-0.366333178,-0.689661691
comp32641_c0_seq1,-0.868244801,-0.647763464,-0.708336048,-0.588729128
comp32645_c0_seq1,-0.89853566,-0.909642155,-1.531354454,-0.813587581
comp32699_c0_seq1,-1.283513248,-0.75915225,-1.091731146,-0.690990682
comp32730_c0_seq1,-0.584125727,-0.169165282,-1.247112116,-0.797174164
comp32811_c0_seq1,-0.30054725,-0.504714413,-0.40171451,-0.397001418
comp33308_c0_seq1,-0.844308489,-0.666494414,-0.339145524,-1.017836189
comp33339_c0_seq1,-0.769903701,-0.789328339,-1.406559418,-0.565779506
comp33565_c0_seq1,-0.367611314,-0.352446217,-0.250869775,-0.408996218
comp33718_c0_seq1,-0.750752103,-0.624732364,-0.709492305,-0.977710613
comp33753_c0_seq1,-0.440358681,-0.44049715,-0.441421987,-0.707589288
comp34088_c0_seq1,-1.017189209,-0.780876952,-1.260036357,-0.580567873
comp34191_c0_seq1,-0.234706457,-1.187341783,-0.882181905,-0.800964377
comp34362_c0_seq1,-0.557273265,-0.357813165,-0.553182282,-0.477189491
comp34362_c0_seq2,-0.424242418,-0.200396739,-0.40802167,-0.326345152
comp34386_c0_seq1,-0.802139397,-0.4634027,-0.580684953,-0.336402753
comp344305_c0_seq1,-0.441798743,-0.211692391,-0.5361899,-0.065593553
comp34440_c0_seq1,-1.001741643,-0.984152134,-1.85496383,-0.720640144
comp34463_c0_seq1,-0.746736836,-0.814115945,-0.712803716,-0.847157413
comp34588_c0_seq1,-0.424242645,-0.441071744,-0.416832791,-0.59039781
comp35088_c0_seq1,-0.814538655,-0.677459074,-0.535841334,-0.169522449
comp3521274_c0_seq1,-0.210181867,0.0668805268,0.055218676,0.0859757357
comp35321_c0_seq1,-0.179098122,-0.200581036,-0.268368412,-0.285972331
comp353858_c0_seq1,-0.276245037,-0.274879683,-0.033709145,-0.160204867
comp35447_c0_seq1,-2.156592349,-2.264291965,-1.759771983,-2.242415298
comp35501_c0_seq2,-0.654873277,-0.68992275,-0.579856166,-0.586576146
comp35692_c0_seq1,-0.230993591,-0.592949657,-0.245180634,-0.49088562
comp35917_c0_seq1,-0.314184894,-0.343546281,0.0207468066,0.0693819687
comp366917_c0_seq1,-0.421240872,-0.264100822,-0.219762573,-0.642169719
comp367462_c0_seq1,-0.147772827,-0.232685888,-0.068593918,-0.087503866
comp37474_c0_seq2,-0.174638259,-0.23702488,-0.242879286,-0.49108098
comp37477_c0_seq1,-0.867947301,-0.871455622,-1.35296755,-0.622089852
comp37700_c0_seq1,-0.70263098,-0.41917555,-0.490370982,-0.668518308
comp37700_c0_seq2,-1.106102976,-0.630083587,-0.753492805,-0.927499901
comp37700_c0_seq3,-1.163898641,-0.705606167,-0.779638842,-0.983975956
comp37759_c0_seq1,-0.192831125,-0.178927068,-0.561359678,-0.259825617
comp37759_c0_seq2,-0.220446838,-0.181570257,-0.475018963,-0.284483629
comp37759_c1_seq1,-0.602054398,-0.61429463,-0.254114116,-0.505864717
comp37801_c0_seq1,-0.459449542,-0.543798536,-0.309093777,-0.391639817
comp37962_c0_seq1,-0.402417384,-0.389836365,-0.559969089,-0.51265236
comp38003_c0_seq1,-0.639346692,-0.485494039,-0.416028405,-0.372776757
comp38099_c0_seq1,-0.370425627,-0.537133019,-0.480121408,-0.185613808
comp38176_c0_seq2,-0.509893614,-0.40781674,-0.358307028,-0.520849232
comp38375_c4_seq1,-0.103709796,-0.472476239,-0.180210232,-0.116403298
comp38528_c0_seq1,-1.173528684,-0.961641825,-1.161149822,-0.836344815
comp38685_c0_seq2,-0.350672718,-0.159719263,-0.18876651,-0.345944729
comp38694_c1_seq1,-0.676334632,-0.859998622,-1.288918872,-0.955169156
comp38723_c0_seq1,-1.13542302,-1.198671674,-1.519370075,-0.766163819
comp38785_c0_seq1,-0.479737735,-0.577211482,-0.344259069,-0.350803612
comp38804_c0_seq1,-0.705957863,-0.581838161,-0.480064135,-0.397303344
comp39198_c0_seq1,-0.367353096,-0.325954548,-0.449997449,-0.569598665
comp39223_c0_seq1,-0.727636679,-0.390701286,-0.566128839,-0.709289075
comp39284_c0_seq1,-0.134853102,-0.33198893,-0.459634938,-0.782880069
comp39296_c0_seq1,-0.538282986,-1.046028896,-0.633249223,-0.699175755
comp39329_c0_seq2,-0.370597268,-0.806777404,-0.481254886,-0.175212126
comp39483_c0_seq1,-0.494122249,-0.16545883,-0.085584702,-0.364642783
comp39506_c0_seq1,-0.591738996,-0.077250891,-0.723198602,-0.095109147
comp39506_c0_seq2,-0.633964535,-0.214210005,-0.781281055,-0.16150087
comp395924_c0_seq1,-0.115040634,-0.164817142,-0.112456372,-0.197318078
comp39684_c0_seq2,-0.078622422,-0.258938485,-0.205689345,-0.224557268
comp39827_c0_seq1,-0.001826035,-0.293286889,-0.145942744,-0.314131603
comp39870_c0_seq1,-0.178565146,-0.299064417,-0.186437279,-0.182316691
comp399358_c0_seq1,-0.436183117,-0.421747657,-0.103442485,-0.556719257
comp40095_c0_seq1,-0.295932435,-0.369405228,-0.16531545,-0.193859338
comp40390_c0_seq1,-0.393902688,-0.297853335,-0.329357441,-0.675093404
comp40390_c1_seq1,-0.192684002,-0.267570337,-0.17168823,-0.126626506
comp40439_c0_seq1,-0.545770409,-0.502457866,-0.415196828,-0.844356598
comp40480_c0_seq1,-0.683426151,-0.723508435,-0.196009029,-0.366118982
comp4091_c0_seq1,-1.878035554,-2.608322402,-2.424021824,-2.327944984
comp40947_c0_seq1,-0.349103308,-1.104683097,-0.674791597,-0.753444137
comp410016_c0_seq1,-0.70940565,-0.719370874,-1.022455484,-0.6706121
comp41001_c0_seq2,-0.252361174,-0.40637147,-0.290993328,-0.349719705
comp41193_c0_seq1,-0.888804937,-0.710269026,-1.465182471,-0.990621241
comp412343_c0_seq1,-0.027198085,-0.116614798,0.1458425719,-0.293279157
comp41329_c0_seq1,-0.399908898,-0.571284184,-0.593440597,-0.453547602
comp41330_c0_seq1,-0.233338943,-0.22800833,-0.257642668,-0.245368464
comp41361_c0_seq1,-0.96511023,-0.784085973,-1.316095298,-1.199760641
comp41361_c0_seq2,-0.735019282,-0.471061916,-1.021802766,-0.926037644
comp41571_c0_seq1,-0.769855525,-0.388375307,-0.503012646,-0.918879784
comp41704_c0_seq1,-0.739448424,-0.242178617,-0.689153556,-0.722219734
comp41704_c0_seq2,-0.694861321,-0.227337265,-0.708130382,-0.834522249
comp41847_c0_seq1,-0.932494147,-0.918050972,-1.177361156,-0.861916095
comp41961_c0_seq1,-0.470582773,-0.590039461,-0.320392006,-0.406000882
comp41993_c0_seq1,-0.793653651,-0.661976007,-0.435714752,-0.80124344
comp42171_c0_seq2,-0.949265539,-0.688732446,-0.976029938,-0.836285349
comp42387_c0_seq1,-0.596224737,-0.217600194,-0.526699234,-0.531341074
comp42585_c0_seq2,-0.464018678,-0.385265468,-0.566577847,-0.451787769
comp42585_c0_seq3,-0.334106017,-0.229543526,-0.422243584,-0.302466371
comp42781_c0_seq1,-0.942433378,-0.931383575,-0.640666098,-0.312728727
comp42829_c0_seq1,-0.228479499,-0.455809038,-0.203451624,-0.329701433
comp42987_c0_seq3,-0.717303943,-1.582449212,-0.593116051,-0.386394371
comp43028_c0_seq2,-0.163874283,-0.268701783,-0.088127652,-0.000366373
comp43101_c1_seq1,-0.186179302,-0.334101529,-0.303870927,-0.170010792
comp43259_c0_seq1,-0.59087705,-0.855798892,-0.663780912,-0.653178017
comp43296_c0_seq1,-0.634158229,-0.398945828,-0.733348092,-0.527131774
comp43691_c0_seq1,-0.676702827,-0.584840026,-0.842265454,-0.457644249
comp43691_c0_seq2,-1.117452746,-0.724755217,-1.14158664,-0.823608726
comp43704_c0_seq1,-0.483211806,-0.687133127,-0.579555285,-0.44137412
comp43768_c0_seq2,-0.566867191,-0.78676658,-0.742947811,-0.590826418
comp43778_c0_seq1,-0.247439007,-0.312026647,-0.257864082,-0.249842584
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comp45013_c0_seq2,-0.041184646,-0.180238654,-0.692065599,-0.209136304
comp45013_c0_seq3,-0.369640634,-0.492081638,-1.061674036,-0.50237271
comp45013_c0_seq4,0.0691598269,-0.019375079,-0.431771886,0.004407854
comp45031_c0_seq1,-0.490006264,-0.686657499,-0.510801453,-0.408141558
comp450418_c0_seq1,-0.228875773,-0.949468816,-0.464111393,-0.52831958
comp45108_c0_seq2,-0.593322085,-0.482523971,-0.221962722,-0.225004628
comp45149_c0_seq1,-0.759739126,-1.061601551,-1.488972895,-0.905208912
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comp46202_c0_seq1,-0.38956457,-0.639194494,-0.190045162,-0.313955596
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comp47304_c0_seq1,-0.59914123,-0.672292049,-0.824681796,-1.159564884
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comp47553_c0_seq1,-0.29428466,-0.19665313,-0.257524336,-0.416283112
comp47636_c0_seq1,-0.159702547,-0.28320821,0.05648541,-0.051431991
comp47775_c0_seq1,-0.236322467,-0.112797842,-0.281384297,-0.045777966
comp478_c0_seq1,-0.419302931,-0.250433123,,
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comp48455_c0_seq1,-0.489341732,-0.486105146,-0.505529862,-0.249483885
comp48462_c0_seq1,-0.336111027,-0.459065231,-0.367811443,-0.136442631
comp48603_c1_seq1,-0.478807423,-0.597129747,-0.489660801,-0.543869514
comp48605_c0_seq1,-0.427773148,-0.454231322,-0.354917984,-0.396114219
comp48605_c0_seq2,-0.020777708,-0.116722249,-0.023357524,0.014118352
comp48605_c0_seq3,-0.280395907,-0.312172517,-0.236888443,-0.322136183
comp48605_c0_seq4,-0.176885904,-0.275409554,-0.17134509,-0.077387364
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