CHROM POS REF ALT Genotype_QS Depth_QS Ref_depth_X Alt_depth_X Depth_X SNPindex_X Ref_depth_D Alt_depth_D Depth_D SNPindex_D 7 28656821 A T A 44 30 0 30 0.00 6 25 31 0.81 7 28841066 C G C 30 43 0 43 0.00 9 29 38 0.76 7 28841071 A G A 31 43 0 43 0.00 9 29 38 0.76 7 28841937 C T C 29 23 0 23 0.00 9 27 36 0.75 7 28846713 G A G 26 30 0 30 0.00 3 15 18 0.83 7 28877894 C T C 58 39 0 39 0.00 7 31 38 0.82 7 29016457 A T A 30 30 0 30 0.00 9 27 36 0.75 7 29069487 T G T 32 31 0 31 0.00 8 25 33 0.76 7 29069930 G A G 38 30 0 30 0.00 10 34 44 0.77 7 29070156 C T C 31 33 0 33 0.00 7 24 31 0.77 7 29071243 A T A 27 37 0 37 0.00 7 21 28 0.75 7 29071488 G A G 41 29 0 29 0.00 6 21 27 0.78 7 29071492 A T A 40 29 0 29 0.00 6 20 26 0.77 7 29074147 T C T 43 33 0 33 0.00 8 24 32 0.75 7 29074192 A T A 37 35 0 35 0.00 8 27 35 0.77 7 29150222 A T A 29 37 0 37 0.00 7 28 35 0.80 7 29154275 G A G 33 32 0 32 0.00 7 25 32 0.78 7 29161615 G A G 19 24 0 24 0.00 8 30 38 0.79 7 29169451 G A G 32 34 0 34 0.00 7 26 33 0.79 7 29169519 C T C 36 31 0 31 0.00 8 26 34 0.76 7 29169583 A G A 40 32 0 32 0.00 7 25 32 0.78 7 29178323 C T C 29 33 0 33 0.00 7 30 37 0.81 7 29178591 A G A 38 28 0 28 0.00 9 27 36 0.75 7 29180626 A G A 27 36 0 36 0.00 6 22 28 0.79 7 29180657 G A G 28 36 0 36 0.00 7 22 29 0.76 7 29180765 A T A 27 42 0 42 0.00 8 29 37 0.78 7 29186584 T A T 9 10 0 10 0.00 4 14 18 0.78 7 29188776 T C T 39 28 0 28 0.00 6 22 28 0.79 7 29191690 C G C 34 18 0 18 0.00 5 24 29 0.83 7 29212055 T C T 55 21 0 21 0.00 6 29 35 0.83 7 29240848 A G A 30 32 0 32 0.00 6 18 24 0.75 7 29287220 A T T 41 0 51 51 0.00 33 8 41 0.80 7 29359362 C T C 29 39 0 39 0.00 10 37 47 0.79 7 29378114 C A C 30 26 0 26 0.00 7 33 40 0.82 7 29378738 C A C 23 30 0 30 0.00 7 24 31 0.77 7 29456777 A G A 31 28 0 28 0.00 8 32 40 0.80 7 29695435 G T G 34 31 0 31 0.00 7 21 28 0.75 7 29696218 A C A 24 28 0 28 0.00 5 21 26 0.81 7 30037396 T G G 30 0 31 31 0.00 36 10 46 0.78 7 30451408 C A C 33 38 0 38 0.00 8 24 32 0.75 7 30493601 G T G 19 19 0 19 0.00 3 16 19 0.84