# Table created from the following input table: ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_all_methods.tsv # Used command: ./dependencies/extract_subtable.py -v -i ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_all_methods.tsv -o ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_all_methods_quality_filtered.tsv --subset_rows_by row_names --wildcards_file ./output/genome_analysis/genome_stats/quality_filtered_genomes_for_16S_GCN_analysis/assembly_and_checkM_stats_filtered.tsv --match_wildcards_exactly --column_names_are_in last_comment_line --row_names_are_in_column genome --save_output_row_names_under_column genome --save_output_column_names_in last_comment_line --include_comments_in_output -f --verbose_prefix ' ' # Generated on: 2018.01.08 15:01:04 # # genome 16S_gene_count_via_annotations 16S_gene_count_via_cmsearch GCF_000006175.1 2 2 GCF_000006805.1 1 1 GCF_000007005.1 1 1 GCF_000007065.1 3 3 GCF_000007305.1 1 1 GCF_000007345.1 3 3 GCF_000008265.1 1 1 GCF_000008645.1 2 2 GCF_000008665.1 1 1 GCF_000009185.1 2 2 GCF_000009965.1 1 1 GCF_000011085.1 3 3 GCF_000011105.1 1 1 GCF_000011185.1 1 1 GCF_000011205.1 1 1 GCF_000011585.1 3 3 GCF_000012285.1 1 1 GCF_000012545.1 4 4 GCF_000013445.1 4 4 GCF_000013725.1 3 3 GCF_000015205.1 1 1 GCF_000015225.1 1 1 GCF_000015765.1 3 3 GCF_000015825.1 1 1 GCF_000015945.1 1 1 GCF_000016125.1 3 3 GCF_000016525.1 2 2 GCF_000016605.1 1 1 GCF_000017165.1 4 4 GCF_000017185.1 2 2 GCF_000017225.1 3 3 GCF_000017945.1 1 1 GCF_000018305.1 1 1 GCF_000018365.1 1 1 GCF_000018485.1 3 3 GCF_000020905.1 1 1 GCF_000021965.1 3 3 GCF_000022205.1 3 3 GCF_000022365.1 1 1 GCF_000022385.1 1 1 GCF_000022405.1 1 1 GCF_000022425.1 1 1 GCF_000022465.1 1 1 GCF_000022485.1 1 1 GCF_000022545.1 1 1 GCF_000023945.1 1 1 GCF_000023965.1 3 3 GCF_000023985.1 2 2 GCF_000024185.1 2 2 GCF_000024625.1 2 2 GCF_000024745.1 1 1 GCF_000025285.1 1 1 GCF_000025325.1 3 3 GCF_000025505.1 1 1 GCF_000025525.1 2 2 GCF_000025625.1 3 3 GCF_000025665.1 1 1 GCF_000025685.1 2 2 GCF_000025865.1 3 3 GCF_000063445.1 3 3 GCF_000069025.1 1 1 GCF_000091665.1 2 2 GCF_000092185.1 1 1 GCF_000092305.1 2 2 GCF_000092465.1 1 1 GCF_000144915.1 1 1 GCF_000145295.1 2 2 GCF_000148385.1 1 1 GCF_000151105.2 1 1 GCF_000151205.2 1 1 GCF_000152265.2 1 1 GCF_000166095.1 2 2 GCF_000172995.2 2 2 GCF_000179575.2 2 2 GCF_000186365.1 1 1 GCF_000189555.1 1 1 GCF_000190315.1 1 1 GCF_000191585.1 2 2 GCF_000193375.1 1 1 GCF_000194625.1 1 1 GCF_000195895.1 3 3 GCF_000195915.1 1 1 GCF_000195935.2 1 1 GCF_000196895.1 1 1 GCF_000204415.1 2 2 GCF_000204925.1 1 1 GCF_000211475.1 1 1 GCF_000213215.1 1 1 GCF_000214415.1 2 2 GCF_000214725.1 3 3 GCF_000215995.1 1 1 GCF_000217715.1 3 3 GCF_000217995.1 3 3 GCF_000220645.1 2 2 GCF_000221185.1 1 1 GCF_000223395.1 1 1 GCF_000223905.1 3 3 GCF_000226975.2 3 3 GCF_000230715.2 3 3 GCF_000230735.2 3 3 GCF_000230955.2 1 1 GCF_000231015.2 1 1 GCF_000235565.1 1 1 GCF_000237865.1 2 2 GCF_000246985.2 1 1 GCF_000251105.1 2 2 GCF_000253055.1 1 1 GCF_000263735.1 1 1 GCF_000264495.1 1 1 GCF_000265525.1 1 1 GCF_000275605.1 1 1 GCF_000281695.1 3 3 GCF_000299395.1 1 1 GCF_000304355.2 1 1 GCF_000306725.1 3 3 GCF_000306765.2 2 2 GCF_000317795.1 1 1 GCF_000327485.1 1 1 GCF_000327505.1 1 1 GCF_000328665.1 2 2 GCF_000328685.1 4 4 GCF_000338775.1 1 1 GCF_000340315.1 1 1 GCF_000350305.1 1 1 GCF_000364745.1 1 1 GCF_000385565.1 1 1 GCF_000403645.1 1 1 GCF_000404165.1 3 3 GCF_000446015.1 1 1 GCF_000470655.1 1 1 GCF_000499765.1 2 2 GCF_000504565.1 3 3 GCF_000517625.1 2 2 GCF_000585495.1 1 1 GCF_000725425.1 2 2 GCF_000734035.1 1 1 GCF_000739065.1 2 2 GCF_000762265.1 2 2 GCF_000769655.1 1 1 GCF_000789255.1 1 1 GCF_000812185.1 1 1 GCF_000813245.1 1 1 GCF_000816105.1 1 1 GCF_000827835.1 3 3 GCF_000828575.1 2 2 GCF_000953115.1 2 2 GCF_000956175.1 1 1 GCF_000968355.1 1 1 GCF_000968395.1 1 1 GCF_000968435.1 1 1 GCF_000969885.1 3 3 GCF_000969905.1 3 3 GCF_000969945.1 3 3 GCF_000969965.1 3 3 GCF_000969985.1 3 3 GCF_000970005.1 3 3 GCF_000970025.1 3 3 GCF_000970045.1 3 3 GCF_000970065.1 3 3 GCF_000970085.1 3 3 GCF_000970145.1 3 3 GCF_000970165.1 3 3 GCF_000970185.1 3 3 GCF_000970205.1 3 3 GCF_000970225.1 3 3 GCF_000970245.1 3 3 GCF_000970265.1 3 3 GCF_000970285.1 3 3 GCF_000970305.1 3 3 GCF_000970325.1 3 3 GCF_000993805.1 1 1 GCF_001006045.1 1 1 GCF_001027005.1 3 3 GCF_001190965.1 2 2 GCF_001266655.1 1 1 GCF_001266675.1 1 1 GCF_001266695.1 1 1 GCF_001266715.1 1 1 GCF_001266735.1 1 1 GCF_001458655.1 2 2 GCF_001484685.1 1 1 GCF_001488575.1 1 1 GCF_001548675.1 2 2 GCF_001563245.1 2 2 GCF_001577775.1 1 1 GCF_001592435.1 1 1 GCF_001647085.1 1 1 GCF_001719125.1 1 1 GCF_001767315.1 1 1 GCF_001886615.1 4 4 GCF_001889405.1 1 2 GCF_001971705.1 2 2 GCF_002078355.1 1 1 GCF_002156705.1 2 2 GCF_002156965.1 1 1 GCF_002197185.1 1 1 GCF_002214165.1 1 1 GCF_002214365.1 1 1 GCF_002214385.1 1 1 GCF_002214465.1 1 1 GCF_002214485.1 1 1 GCF_002214505.1 1 1 GCF_002214525.1 1 1 GCF_002214545.1 1 1 GCF_002214565.1 1 1 GCF_002214585.1 1 1 GCF_002214605.1 1 1 GCF_002215405.1 1 1 GCF_002215445.1 1 1 GCF_002215485.1 1 1 GCF_002215525.1 1 1 GCF_002215565.1 1 1 GCF_002355635.1 2 2 GCF_002355655.1 2 2 GCF_002813085.1 2 2 GCF_002813655.1 2 2 GCF_002813675.1 2 2 GCF_002813695.1 2 2 GCF_002844335.1 2 2 GCF_900012635.1 1 1 GCF_900036045.1 1 1 GCF_900079115.1 1 1 GCF_900079125.1 1 1 GCF_900090055.1 1 1 GCF_900095295.1 3 3 GCF_900095815.1 2 2 GCF_900198835.1 1 1 GCF_000006605.1 3 3 GCF_000006625.1 2 2 GCF_000006645.1 7 7 GCF_000006685.1 2 2 GCF_000006725.1 2 2 GCF_000006745.1 8 8 GCF_000006765.1 4 4 GCF_000006785.2 6 6 GCF_000006825.1 6 6 GCF_000006845.1 4 4 GCF_000006865.1 6 6 GCF_000006905.1 2 2 GCF_000006925.2 7 7 GCF_000006945.2 7 7 GCF_000006985.1 2 2 GCF_000007085.1 4 4 GCF_000007105.1 3 3 GCF_000007125.1 3 3 GCF_000007165.1 2 2 GCF_000007205.1 1 1 GCF_000007245.1 2 2 GCF_000007265.1 7 7 GCF_000007285.1 6 6 GCF_000007325.1 5 5 GCF_000007365.1 1 1 GCF_000007425.1 6 6 GCF_000007445.1 7 7 GCF_000007465.2 5 5 GCF_000007485.1 1 1 GCF_000007505.1 3 3 GCF_000007525.1 4 4 GCF_000007545.1 7 7 GCF_000007565.2 7 7 GCF_000007585.1 4 4 GCF_000007605.1 1 1 GCF_000007625.1 6 6 GCF_000007645.1 5 5 GCF_000007665.1 1 1 GCF_000007685.1 2 2 GCF_000007705.1 8 8 GCF_000007725.1 1 1 GCF_000007745.1 6 6 GCF_000007785.1 4 4 GCF_000007805.1 5 5 GCF_000007845.1 11 11 GCF_000007865.1 1 1 GCF_000007885.1 7 7 GCF_000007905.1 1 1 GCF_000007925.1 1 1 GCF_000007945.1 6 6 GCF_000007985.2 2 2 GCF_000008005.1 12 12 GCF_000008025.1 1 1 GCF_000008065.1 6 6 GCF_000008105.1 7 7 GCF_000008125.1 2 2 GCF_000008145.1 3 3 GCF_000008165.1 11 11 GCF_000008185.1 2 2 GCF_000008205.1 1 1 GCF_000008225.1 1 1 GCF_000008245.1 2 2 GCF_000008285.1 6 6 GCF_000008305.1 2 2 GCF_000008325.1 2 2 GCF_000008345.1 3 3 GCF_000008365.1 1 1 GCF_000008385.1 1 1 GCF_000008405.1 1 1 GCF_000008425.1 7 7 GCF_000008445.1 11 11 GCF_000008465.1 4 4 GCF_000008485.1 3 3 GCF_000008505.1 14 14 GCF_000008525.1 2 2 GCF_000008565.1 3 3 GCF_000008585.1 1 1 GCF_000008685.2 1 1 GCF_000008725.1 2 2 GCF_000008745.1 1 1 GCF_000008785.1 2 2 GCF_000008865.1 7 7 GCF_000008885.1 2 2 GCF_000008925.1 7 7 GCF_000008945.1 4 4 GCF_000008985.1 3 3 GCF_000009005.1 5 5 GCF_000009025.1 1 1 GCF_000009045.1 10 10 GCF_000009065.1 6 6 GCF_000009105.1 4 4 GCF_000009125.1 4 4 GCF_000009145.1 1 1 GCF_000009165.1 2 2 GCF_000009225.2 5 5 GCF_000009245.1 3 3 GCF_000009265.1 3 3 GCF_000009285.1 5 5 GCF_000009325.1 3 3 GCF_000009345.1 7 7 GCF_000009365.1 3 3 GCF_000009385.1 6 6 GCF_000009425.1 6 6 GCF_000009465.1 4 4 GCF_000009485.1 6 6 GCF_000009505.1 7 7 GCF_000009525.1 7 7 GCF_000009545.1 5 5 GCF_000009565.1 7 7 GCF_000009585.1 6 6 GCF_000009605.1 1 1 GCF_000009645.1 5 5 GCF_000009665.1 5 5 GCF_000009685.1 10 10 GCF_000009705.1 4 4 GCF_000009725.1 2 2 GCF_000009745.1 9 9 GCF_000009765.2 6 6 GCF_000009785.1 9 9 GCF_000009825.1 7 7 GCF_000009845.1 2 2 GCF_000009865.1 5 5 GCF_000009885.1 8 8 GCF_000009905.1 6 6 GCF_000009925.1 6 6 GCF_000009945.1 1 1 GCF_000009985.1 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GCF_000015405.1 2 2 GCF_000015445.1 2 2 GCF_000015465.1 5 5 GCF_000015485.1 5 5 GCF_000015545.1 3 3 GCF_000015565.1 3 3 GCF_000015605.1 4 4 GCF_000015625.1 4 4 GCF_000015645.1 1 1 GCF_000015665.1 1 1 GCF_000015685.1 1 1 GCF_000015745.1 10 10 GCF_000015785.1 9 11 GCF_000015845.1 10 10 GCF_000015865.1 4 4 GCF_000015905.1 4 4 GCF_000015925.1 4 4 GCF_000015965.1 1 1 GCF_000015985.1 4 4 GCF_000016005.1 2 2 GCF_000016045.1 7 7 GCF_000016065.1 8 8 GCF_000016085.1 1 1 GCF_000016105.1 3 3 GCF_000016145.1 1 1 GCF_000016185.1 4 4 GCF_000016245.1 8 8 GCF_000016265.1 3 3 GCF_000016285.1 4 4 GCF_000016305.1 8 8 GCF_000016325.1 7 7 GCF_000016345.1 1 1 GCF_000016365.1 2 2 GCF_000016405.1 4 4 GCF_000016425.1 3 3 GCF_000016445.1 7 7 GCF_000016505.1 7 7 GCF_000016545.1 3 3 GCF_000016565.1 4 4 GCF_000016585.1 8 8 GCF_000016645.1 6 6 GCF_000016665.1 2 2 GCF_000016685.1 6 6 GCF_000016705.1 1 1 GCF_000016725.1 2 2 GCF_000016745.1 2 2 GCF_000016805.1 6 6 GCF_000016825.1 6 6 GCF_000016845.1 3 3 GCF_000016865.1 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GCF_900205295.1 7 7 GCF_900217235.1 3 3 GCF_900231165.1 2 2 GCF_900234345.1 7 7 GCF_900234355.1 7 7 GCF_900234375.1 7 7 GCF_900234395.1 7 7 GCF_900234405.1 7 7 GCF_900234795.1 5 5 GCF_900236335.1 3 3 GCF_900236345.1 3 3 GCF_900236355.1 3 3 GCF_900236365.1 3 3 GCF_900236375.1 3 3 GCF_900236385.1 3 3 GCF_900236395.1 3 3 GCF_900236405.1 3 3 GCF_900236415.1 3 3 GCF_900236425.1 3 3 GCF_900236435.1 3 3 GCF_900236445.1 3 3 GCF_900236455.1 3 3 GCF_900236465.1 3 3 GCF_900236485.1 3 3 GCF_900236495.1 3 3 GCF_900236515.1 3 3 GCF_900236525.1 3 3 GCF_900236535.1 3 3 GCF_900236545.1 3 3 GCF_900236555.1 3 3 GCF_900236565.1 3 3 GCF_900236575.1 3 3 GCF_900236585.1 3 3