#NEXUS [written Fri Mar 04 11:16:54 EST 2016 by Mesquite version 3.04 (build 725) at michelle-stockers-macbook-pro.local/10.231.63.107] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=74; TAXLABELS AMNH_2705 AMNH_7238 AMNH_7230 AMNH_7232 AMNH_7231 AMNH_7233 AMNH_7236 AMNH_7228 AMNH_7229 AMNH_7227 AMNH_7234 AMNH_7223 AMNH_7224 AMNH_7249 AMNH_7244 AMNH_7246 AMNH_7247 AMNH_7251 AMNH_7253 AMNH_7252 CM_89951 CM_81768 CM_81766 CM_81767 CM_81770 CM_81768_#2 CM_31390 CM_81774 CM_81775 CM_81779 CM_81778 CM_81773 CM_81771 CM_#3 CM_#4 CMNH_10971_#1 CMNH_10971_#2 CMNH_10971_#3 CMNH_10971_#4 CMNH_10971_#5 CMNH_10971_#6 CMNH_10971_#10 CMNH_10971_#15 CMNH_10971_#18 CMNH_10971_#21 CMNH_10971_#22 GR_148 GR_655 HMCZ_4334_#2 HMCZ_4331_#1 HMCZ_4332_#2 HMCZ_9433 MNA_V1960_#2 MNA_V1960_#3 MNA_V3318 'NMMNH P-42353' 'NMMNH P-42578' 'NMMNH P-42352' 'NMMNH P-42351' 'NMMNH P-42586' SMP_1306 SMP_858 SMP_630 SMP_#3 SMP_#4 SMP_#6 SMP_#8 TMP_1984.063.0001_#2 TMP_1984.063.0001_#9 TMP_1984.063.0001_#13 TMP_1984.063.0001_#14 TMP_1984.63.6 'Immature_outgroup' 'Mature_outgroup' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=27; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2"; CHARSTATELABELS 1 Character_1, 2 Character_2, 3 Character_3, 4 Character_4, 5 Character_6, 6 Character_7, 7 Character_8, 8 Character_9, 9 Character_10, 10 Character_14, 11 Character_15, 12 Character_16, 13 Character_17, 14 Character_18, 15 Character_19, 16 Character_20, 17 Character_21, 18 Character_22, 19 Character_23, 20 Character_24, 21 Character_25, 22 Character_26, 23 Character_27, 24 Character_28, 25 Character_29, 26 Character_31, 27 Character_32 ; MATRIX AMNH_2705 ??????????????????001?????? AMNH_7238 101001????1111??11??0??1??? AMNH_7230 0?1101????????????11??01101 AMNH_7232 ???1?1????1111????0???????? AMNH_7231 1010011???????????1?1?????? AMNH_7233 111110?????1??????100?1???? AMNH_7236 ??100??????????????0??????? AMNH_7228 111111????10?????101??1???? AMNH_7229 111110????1110????1?011???? AMNH_7227 101011????????????110111??? AMNH_7234 ??????????1111????110?????? AMNH_7223 111111????1000????10?12?101 AMNH_7224 11?11??????0???????0?021??? AMNH_7249 0?1111??1??0??????01??2???? AMNH_7244 10110?????1000??000000????? AMNH_7246 ????????????????0?01??????? AMNH_7247 101110????11100001????????? AMNH_7251 101111????????????00??????? AMNH_7253 ??????????1100??11????????? AMNH_7252 110?111?0?????????000?1???? CM_89951 ??????????1000?1??????????? CM_81768 101101????1000????000?21??? CM_81766 11100???????00????0??120001 CM_81767 10110??????000???0000??0??? CM_81770 ??10??????1100????????????? CM_81768_#2 ?????????????????1??????101 CM_31390 ??????????????????11012???? CM_81774 101100????0000???010??2???? CM_81775 111?0?????????????1001????? CM_81779 0?????????1000??1110??????? CM_81778 100110????????????????????? CM_81773 111111????????????1??11???? CM_81771 111111????1110??0?11?12???? CM_#3 110110????????????????????? CM_#4 ??1???1110????????????????? CMNH_10971_#1 111111????1000???010?1????? CMNH_10971_#2 0?1???????1100????10?1????? CMNH_10971_#3 101111????1100????11?12???? CMNH_10971_#4 110000????????????10??????? CMNH_10971_#5 101?0????01000???????1????? CMNH_10971_#6 111010????????????1???????? CMNH_10971_#10 ??????????1010?1??????????? CMNH_10971_#15 1011111111101000???????1??? CMNH_10971_#18 11111110??????????????????? CMNH_10971_#21 1011?1????????????10??????? CMNH_10971_#22 ??????????1010???0????????? GR_148 111?1???11??0??????11?2???? GR_655 100000????????????????????? HMCZ_4334_#2 101111???11?????1011111???? HMCZ_4331_#1 11??11????1??????110??2???? HMCZ_4332_#2 111?1??11??1???11111??1???? HMCZ_9433 ??????????????001?????????? MNA_V1960_#2 101??1????111??1???0??????? MNA_V1960_#3 111????????1?????0????????? MNA_V3318 10????????1110?10010??10??? 'NMMNH P-42353' 1?0001????????????????001?1 'NMMNH P-42578' ???????????????????????1??0 'NMMNH P-42352' 1?1011?10111??10??????11??? 'NMMNH P-42351' 11111?11111000????000?201?? 'NMMNH P-42586' 101?110000????????000?0???? SMP_1306 101110????????????00011???? SMP_858 101111????1111??111??12???? SMP_630 101011???1?0001?0110012???? SMP_#3 ??1??1????1000????11?12???? SMP_#4 ??????????11101111?????0??? SMP_#6 ????????001?1???01?00?????? SMP_#8 111??110???????????0??????? TMP_1984.063.0001_#2 101?1111111110?10111?12???? TMP_1984.063.0001_#9 ??????????100000??????????? TMP_1984.063.0001_#13 ??????????????????101?????? TMP_1984.063.0001_#14 ??????11?1????????????????? TMP_1984.63.6 10111111?11111????????????? 'Immature_outgroup' 000000000000000000000000000 'Mature_outgroup' 111111111111111111111121111 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 22 24 - 27, ord: 23; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 27; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1457108214149; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7139426256292304544; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7866812256207272281; mqVersion 304; checksumv 0 3 2076731004 null getNumChars 27 numChars 27 getNumTaxa 74 numTaxa 74 short true bits 7 states 7 sumSquaresStatesOnly 2394.0 sumSquares 2394.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7866812256207272281 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 428; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;