# Table S1. Number of metaproteins, PSI-Blast hits and enriched ontologies per analyzed taxon Taxon,Metaproteome,PSI-Blast hits,Enriched Ontologies Escherichia,63664,5283,431 Listeria,5557,4000,514 Actinomyces,2007,3173,520 Eubacterium,11343,4602,455 Leuconostoc,1847,2660,522 Bacillus,13426,5061,520 Catenibacterium,2977,2908,506 Propionibacterium,4824,3727,545 Erysipelotrichaceae,19863,4501,428 Veillonella,1861,2796,509 Arcobacter,964,1943,336 Coprococcus,15091,4978,412 Megamonas,2529,2896,560 Blautia,7038,3868,456 Tannerella,3210,3688,475 Lactobacillus,41120,5509,384 Dialister,2155,2953,536 Campylobacter,5302,3345,483 Enterobacter,4618,3566,651 Clostridium,51228,6916,364 Pseudomonas,6049,4320,624 Weissella,1952,2701,532 Paenibacillus,13434,5151,466 Cedecea,4805,3751,640 Fusobacterium,33340,6148,399 Dysgonomonas,7573,4101,473 Parvimonas,1678,2433,464 Edwardsiella,3964,3367,641 Enterobacteriaceae,4086,4069,551 Intestinibacter,2787,3561,466 Flavonifractor,4278,3298,499 Prevotella,11514,4374,498 Streptomyces,15001,5757,506 Parasutterella,2751,2882,581 Corynebacterium,4774,3938,567 Odoribacter,3103,3992,451 Bifidobacterium,22912,4720,334 Dorea,9747,3747,488 Roseburia,9056,4061,436 Butyrivibrio,2529,2838,477 Succinatimonas,2169,2692,581 Turicibacter,4198,3551,489 Bacteroides,126434,7259,305 Ruminiclostridium,10510,4212,421 Lachnospiraceae,70354,6822,319 Coprobacillus,9590,3996,492 Dermabacter,2133,3103,554 Eggerthella,4549,3595,495 Streptococcus,9332,3977,582 Anaerostipes,9100,4255,431 Phascolarctobacterium,2150,2648,563 Paenisporosarcina,3449,3766,539 Collinsella,8825,3786,446 Oxalobacter,2260,3078,527 Desulfitobacterium,5407,3859,477 Desulfovibrio,8181,4042,438 Anaerococcus,2069,2858,448 Parabacteroides,8759,4105,470 Ruminococcus,17029,4733,410 Synergistes,2960,3150,491 Sutterella,9085,3621,499 Paraprevotella,7377,3698,478 Klebsiella,18217,4403,578 Peptoclostridium,9608,4122,539 Helicobacter,53242,4097,345 Ruminococcaceae,2994,3278,490 Proteus,8620,4010,567 Slackia,1799,2939,522 Bilophila,7355,3788,514 Faecalibacterium,10158,3684,420 Alistipes,5068,4025,486 Anaerofustis,2331,3154,425 Methanobrevibacter,2793,2898,566 Enterococcus,25074,4677,471 Erysipelatoclostridium,5627,3555,451 Butyricicoccus,3112,3177,514 Yokenella,4710,3646,661 Ralstonia,5732,4101,596 Pediococcus,1884,2937,553 Marvinbryantia,4896,3385,414 Pseudoflavonifractor,4829,3510,443 Staphylococcus,2286,3231,597 Subdoligranulum,7457,3685,468 Neisseria,3003,3285,513 Acidaminococcus,2909,2652,567 Holdemania,4223,3292,466 Mitsuokella,2558,2983,552 Barnesiella,2813,3380,517 Tyzzerella,4239,3102,498 Citrobacter,13237,4179,558 Providencia,17270,4572,505 Anaerobaculum,2500,2679,514