Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile

Supplemental material

• Supplemental file 1 -

  Supplemental legends

  PDF, 116K

• Supplemental file 2 -

  Table S1 (List of BAPS grouping results per MLST sequence type)

  XLSX, 37K

• Supplemental file 3 -

  Table S2 (List of core genome genes used for the C. difficile cgMLST scheme)

  XLSX, 117K

• Supplemental file 4 -

  Table S3 (Metadata and allelic profiles of all C. difficile reference strains and isolates used for cgMLST scheme definition and evaluation)

  XLSX, 775K

• Supplemental file 5 -

  Table S4 (List of C. difficile genomes downloaded from NCBI used for evaluation of cgMLST scheme)

  CSV, 15M

• Supplemental file 6 -

  Fig. S1 (Minimum spanning tree of all isolates downloaded from NCBI used for evaluation of the cgMLST scheme and comparison with classical MLST)

  PDF, 387K