Table S3. Detailed primers to detect DENV3 by RT-LAMP.,,,,
Set number,Clusters,Set location (nt),Oligo name,Oligo sequence (5’-3’)
3.1.,6 & 7,580-877,0F3_D367,TCTGGAATCAACATGTGCACACTCAT
,,,0B3_D367,GGGCCCATGTCTCTACCTTCTCGA
,,,0FIP_D367,ACTGATCTCTTGTCGCGTCTATGCTACGGTCACTTACAAATGCCCCCA
,,,0BIP_D367,GCGTTAGCTCCCCATGTCGGCTCCAAGCTCCTTCAGCCGACA
,,,0FLOOP_D367,TGTTGATGTAAGGTTGCACCAGCA
,,,0BLOOP_D367,GGGACTGGACACACGCACCC
3.2.,"14, 15 & 5",3250-3743,0F3_D314155,TACCACACCCAGACGGCGGG
,,,0B3_D314155,ACGCCCATTCCCATCCTGTCA
,,,0FIP_D314155,TCTTCTCCCATGTATCGCAGGGGAACTGTGGGACAAGAGGCCCA
,,,0BIP_D314155,TGGTATGGCATGGAAATCAGACCCAACCCAATCATTATTAGTGTGTGCGCCA
,,,0FLOOP_D314155,ACTTCCCTGACACTGTTGTTGTTCTCA
,,,0BLOOP_D314155,TCCTTCTCTCAGGGCAAATAACATGGA
3.3.,2,4012-4400,1F3_D32,ACTGTTGCCTGGAGAACAGCCA
,,,1B3_D32,TTGTGGGACACTCCTGTTTGCTC
,,,1FIP_D32,CCCCCTCATTCAGTGGCCAGCCCAGTGTGCCAGTCTTCGAGCA
,,,1BIP_D32,GCTGGACCATTAGTGGCTGGGGGCTGCTTTTTCTACAGTGAGGTCTGC
,,,1FLOOP_D32,GGTGGAACTCCCATAGCTGCCA
,,,1BLOOP_D32,AGCGTGCTACGTCATAACTGGCA
3.4.,1,4798-5288,0F3_D31,CTGATTTCATACGGAGGAGGATGGAGA
,,,0B3_D31,AGTCCTTTCAGTGCTTCTTCCATCTCA
,,,0FIP_D31,GGAGATCCTGAAGTTCCAGGCTTGATGCCGTAGAGCCTGGGAAGAA
,,,0BIP_D31,CGCAAACAAATGCAGAACCAGACGGTGCAACCACTCTTGTTGGTGCCA
,,,0FLOOP_D31,AGTGCAATTGCTCCTATTTCCCCC
,,,0BLOOP_D31,GGGTCAGGAAAGACGCGGAAATATCTT
3.5.,8 & 9,5892-6388,0F3_D389,GCGAGTGATCCTGGCTGGACC
,,,0B3_D389,AGGGATCTGAATAAGTGCGGGCA
,,,0FIP_D389,TCCCTTCTGGTGTGTTGATGTTGTCCGCAAAGGAGAGGGAGAGTTGGC
,,,0BIP_D389,AGAGAGGGAGAAGTCAGCCGCTTCTCCTTCCTTTGTCCAGATTTCCACA
,,,0FLOOP_D389,AGAGGCTGGCCCGTGAATATGT
,,,0BLOOP_D389,TCGTGGAACTCATGAGGAGGGG
3.6.,"10, 11, 12, 13, 14 & 15",8223-8715,1F3_D310to15,TGGAGGAATGCTTGTGAGAAATCCAC
,,,1B3_D310to15,CCTGGGTGTCCTGGTGTCCACT
,,,1FIP_D310to15,TTGGGTGTTTCTGGTTCCGCATTCACGAAACTCCACGCACGAA
,,,1BIP_D310to15,GGCTCAGCCTCCTCCATGATAAATGGGGAGTTGTATCTGTCATTGCCATCTGT
,,,1FLOOP_D310to15,GCGACAATGTTACCTGTGCCATTAGA
,,,1BLOOP_D310to15,TGGGATGTGGTGCCCATGGTG
3.7.,11 & 3,8951-9386,0F3_D3113,TGGGCAAGTGTGGAAGCTGTGT
,,,0B3_D3113,ACCGTGCCTGTTGGAGTCGG
,,,0FIP_D3113,TGCAGTCCTTCTCCTTCCACTCCATGGGCAAGAGAGAGAAGAAACTTGGA
,,,0BIP_D3113,GGGACATTTCCAAGATACCCGGAGGCCTGTGTTCAGGGTCCATTTGCTGT
,,,0FLOOP_D3113,TCTCACGCGAGAACCAGTGGT
,,,0BLOOP_D3113,ACAGAAGATGACCTGCACAATGAGG
3.8.,12 & 4,8951-9394,0F3_D3124,TGGGCAAGTGTGGAAGCTGTGT
,,,0B3_D3124,TGTCCATTACCGTGCCTGTTGG
,,,0FIP_D3124,GGCTTCGAACTCAAGGTACCTGGCTGGGCAAGAGAGAGAAGAAACTTGGA
,,,0BIP_D3124,AGGGACATTTCCAAGATACCCGGAGTCGGTCGTTGAACTTTGACCACT
,,,0FLOOP_D3124,GCTCTACTGCCTTTTGCTTTGCCA
,,,0BLOOP_D3124,GGAAAAGATCACACAGCAAATGGACCC
,,,,