Targeted Proteomics Guided by Label-free Quantitative Proteome Analysis in Saliva Reveal Transition Signatures from Health to Periodontal Disease

Supplemental Data

• Supplemental file S1 - Demographics and Full-mouth Clinical Parameters of the Study Groups at Phase 1 and Phase 2
• Supplemental File S2 - Time-scheduled transitions list containing the Q1 m/z, Q3 m/z, actual retention time , peptide information, collision energy of the instrument
• Supplemental File S3 - Time-scheduled transitions list containing the Q1 m/z, Q3 m/z, actual retention time , peptide information, collision energy of the instrument
• Supplmental File S4a - Skyline files quantification results
• Supplemental File S4b - Skyline files quantification results
• Supplemental file S5 - SRM Data Processing
• Supplemental file S6 - SRM Data Processing
• Supplemental File S7 - SRM Data Processing- List of 60 proteins
• Supplemental File 8 - List of 65 proteins and the corresponding proteotypic peptides
• Supplemental file S9 - List of 65 proteins and the corresponding proteotypic peptides
• Supplemental File S10 - List of identifed and quantified proteins from Progenesis
• Supplemental File S11 - List of label-free quantified proteins from Progenesis
• Supplemental File S12 - Enrichment analysis report
• Supplemental File S13 - Enrichment analysis report
• Supplemental File S14 - Proteins detected with SRM
• Supplemental File S15 - Uniqueness of the selected peptides for a given protein