{"text_format":"2","workbook":"xlsx","n_sheets":4,"sheets":["Genetic Marker Panels","Genomes","Linkage Maps","QTLs"],"not_rendered":{"charts":0,"images":0,"macros":0,"external_links":0,"defined_names":0,"comments":0,"pivot_tables":0},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"run_cost":"one","rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"Genetic Marker Panels","index":0,"n_rows":26,"n_cols":7,"rows_kept":26,"cut":false,"hidden":false,"merged":[]}
["common.name","scientific.name","num.markers","marker.type","assay.type","group","references"]
["South African abalone","Haliotis midae",234,"SNP","Illumina GoldenGate","abalone","Bester-Van Der Merwe et al. (2013)"]
["Grooved carpet shell","Ruditapes decussatus",12,"Msat","Multiplex","clam","Borrell et al. (2014)"]
["Banded carpet shell","Venerupis rhomboides",13,"Msat","Multiplex","clam","Chacón et al. (2012)"]
["Pacific oyster","Crassostrea gigas",55,"SNP","High-resolution melting","oyster","Jin et al. (2013)"]
["Silver-lipped pearl oyster","Pinctada maxima",2782,"SNP","Illumina Infinium","oyster","Jones et al. (2013)"]
["Pacific oyster","Crassostrea gigas",384,"SNP","Illumina Goldengate","oyster","Lapègue et al. (2014)"]
["European flat oyster","Ostrea edulis",384,"SNP","Illumina Goldengate","oyster","Lapègue et al. (2014)"]
["Ark shell","Scapharca broughtonii",8,"Msat","Multiplex","clam","Li et al. (2016)"]
["Pacific oyster","Crassostrea gigas",12,"Msat","Multiplex","oyster","Li et al. (2010)"]
["King scallop","Pecten maximus",12,"Msat","Multiplex","scallop","Morvezen et al. (2013)"]
["Blue mussel","Mytilus galloprovincialis",227,"SNP","Sequenom iPLEX","mussel","Nguyen et al. (2014)"]
["Blue mussel","Mytilus galloprovincialis",10,"Msat","Multiplex","mussel","Nguyen et al. (2011)"]
["Zhikong scallop","Chlamys farreri",12,"Msat","Multiplex","scallop","Nie et al. (2012)"]
["Lion-paw scallop","Nodipecten subnodosus",6,"Msat","Multiplex","scallop","Petersen et al. (2008)"]
["Blue mussel","Mytilus galloprovincialis",9,"Msat","Multiplex","mussel","Pino-Querido et al. (2014)"]
["Pacific oyster","Crassostrea gigas",53,"SNP","High-resolution melting","oyster","Sun et al. (2015)"]
["Vietnamese commercial clam","Lutraria rhynchaena",12,"Msat","Multiplex","clam","Thai et al. (2016)"]
["South African abalone","Haliotis midae",9,"Msat","Multiplex","abalone","van den Bergb and Roodt-Wilding (2010)"]
["Pacific oyster","Crassostrea gigas",1301,"SNP","High-resolution melting","oyster","Wang et al. (2015)"]
["Eastern oyster","Crassostrea virginica",16,"Msat","Multiplex","oyster","Wang et al. (2010)"]
["Pacific oyster","Crassostrea gigas",40625,"SNP","Affymetrix Axiom Array","oyster","Gutierrez et al. (2017)"]
["European flat oyster","Ostrea edulis",14950,"SNP","Affymetrix Axiom Array","oyster","Gutierrez et al. (2017)"]
["Pacific oyster","Crassostrea gigas",190420,"SNP","Affymetrix Axiom Array","oyster","Qi et al. (2017)"]
[]
["Presented data based on microsatellite multiplexes and SNP panels with > 50 SNPs"]

{"sheet":"Genomes","index":1,"n_rows":8,"n_cols":12,"rows_kept":8,"cut":false,"hidden":false,"merged":[]}
["common.name","scientific.name","technology","assembly.level","num.scaffolds","scaffold.n50","num.contigs","contig.n50","coverage","predicted.genes","reference","notes"]
["Pacific oyster","Crassostrea gigas","Illumina","scaffold",7659,401685,30460,31239,"100x",28027,"Zhang et al. (2012)"]
["Pearl oyster","Pinctada fucata","Illumina","scaffold",29306,167000,77192,21300,"193x",23516,"Takeuchi et al. (2012, 2016)"]
["Mediterranean mussel","Mytilus galloprovincialis","Illumina","scaffold",1746447,2651,2300000,846,"32x",10891,"Nguyen et al. (2014), Murgarella et al. (2016)","Scaffold N50 from Murgarella et al. (2016), Contig N50 from Nguyen et al. 2014"]
["Manila clam","Ruditapes philippinarum","Illumina","scaffold",13411,119518,"NA","NA","40X",41275,"Mun et al. (2017)","Summary statistics from Haploview assembly; contig number and N50 not reported."]
["Zhikong scallop","Chlamys farreri","Illumina/PacBio","scaffold",96024,602000,148999,21500,"382x",26602,"Li et al. (2017)"]
["Eastern oyster","Crassostrea virginica","PacBio","chromosome",11,75944018,669,1971208,"87x",60213,"Abdelrahman et al. (2017); NCBI GenBank","Not currently published: stats obtained from GenBank"]
["Yesso scallop","Patinopecten yessoensis","Illumina","scaffold",82731,803631,145537,38000,"297x",26415,"Wang et al. (2017)"]

{"sheet":"Linkage Maps","index":2,"n_rows":25,"n_cols":10,"rows_kept":25,"cut":false,"hidden":false,"merged":[]}
["common.name","scientific.name","sex","marker.type","num.markers","avg.marker.interval","linkage.groups","group","reference","notes"]
["Japanese scallop","Patinopecten yessoensis","Female","AFLP;Msat","187;4",15.6,20,"scallop","Xu et al. (2008)"]
["Japanese scallop","Patinopecten yessoensis","Male","AFLP;Msat","192;2",14.7,21,"scallop","Xu et al. (2008)"]
["Blacktip abalone","Haliotis rubra","Female","Msat",98,9.8,20,"abalone","Baranski et al. (2006)"]
["Blue mussel","Mytilus edulis","Male","AFLP",116,8.09,14,"mussel","Lallias et al. (2007)"]
["Blue mussel","Mytilus edulis","Female","AFLP",121,8,14,"mussel","Lallias et al. (2007)"]
["Blacktip abalone","Haliotis rubra","Male","Msat",102,7.3,17,"abalone","Baranski et al. (2006)"]
["South African abalone","Haliotis midae","Combined","SNP;Msat","70;116",6.88,18,"abalone","Vervalle et al. (2013)"]
["Pacific abalone","Haliotis discus","Female","Msat",160,6.3,19,"abalone","Liu et al. (2006), Sekino and Hara (2007)","Data reported from Sekino and Hara (2007)"]
["Pacific abalone","Haliotis discus","Male","Msat",167,4.7,18,"abalone","Liu et al. (2006), Sekino and Hara (2007)","Data reported from Sekino and Hara (2007)"]
["Bay scallop","Agropecten irradians","Combined","Msat",161,5.9,16,"scallop","Qin et al. (2007a, 2007b), Wang et al. (2007), Li et al. (2012)","Data reported from Li et al. (2012)"]
["Eastern oyster","Crassostrea virginica","Male","AFLP;Msat",145,5.7,12,"oyster","Yu and Guo (2003, 2006)","Data reported from Yu and Guo (2006)"]
["Eastern oyster","Crassostrea virginica","Female","AFLP;Msat",149,3.1,10,"oyster","Yu and Guo (2003, 2006)","Data reported from Yu and Guo (2006)"]
["Pacific lion-paw scallop","Nodipecten subnodosus","Combined","AFLP;Msat","264;56",3.8,22,"scallop","Petersen et al. (2012)"]
["European flat oyster","Ostrea edulis L.","Combined","AFLP;Msat;SNP","157;17;119",3,10,"oyster","Lallias et al. (2007), Harrang et al. (2015)","Data reported from Harrang et al. (2015) Family 3"]
["Triangle pearl mussel","Hyriopsis cumingii","Combined","SNP;Msat","4508;475",1.81,19,"mussel","Bai et al. (2015, 2016)"]
["Pearl oyster","Pinctada fucata","Combined","SNP",1373,1.41,14,"oyster","Li and Hi (2014)"]
["Pacific oyster","Crassostrea gigas","Combined","SNP;Msat","607;49",1.4,10,"oyster","Li and Guo (2004), Hubert and Hedgecock (2004), Guo et al. (2012), Zhong et al. (2014), Hedgecock et al. (2015)e","Data reported from Hedgecock et al. (2015) consensus map based on five familes and >1100 loci mapped"]
["Silver-lipped pearl oyster","Pinctada maxima","Combined","SNP",887,0.94,14,"oyster","Jones et al. (2013)"]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Combined","SNP",1695,0.8,10,"oyster","Wang et al. (2016)","1695 RAD loci containing 3367 SNPs"]
["Zhikong scallop","Chlamys farrei","Male","SNP",1861,0.62,19,"scallop","Li et al. (2005), Zhan et al. (2009), Jiao et al. (2014)"]
["Zhikong scallop","Chlamys farrei","Female","SNP",2025,0.59,19,"scallop","Li et al. (2005), Zhan et al. (2009), Jiao et al. (2014)"]
["Small abalone","Haliotis diversicolor","Combined","SNP",3717,0.59,16,"abalone","Shi et al. (2010), Zhan et al. (2012), Ren et al. (2016)","Data reported from Ren et al. (2016)"]
["Akoya pearl oyster","Pinctada martensii","Combined","SNP",3117,0.39,14,"oyster","Shi et al. (2009, 2014)","Data reported from Shi et al. (2014)"]
["Manila clam","Ruditapes philippinarum","Combined","SNP",9658,0.42,18,"clam","Nie et al. (2017)"]

{"sheet":"QTLs","index":3,"n_rows":80,"n_cols":9,"rows_kept":80,"cut":false,"hidden":false,"merged":[]}
["common.name","scientific.name","trait","trait.type","num.loci","reference","group","year","notes"]
["Eastern oyster","Crassostrea virginica","Dermo/summer resistance","disease resistance",12,"Yu and Guo (2006)","oyster",2006]
["Bay scallop","Agropecten irradians","Shell width","growth",1,"Li et al. (2012)","scallop",2012]
["Bay scallop","Agropecten irradians","Total weight","growth",1,"Li et al. (2012)","scallop",2012]
["Bay scallop","Agropecten irradians","Shell height","growth",1,"Li et al. (2012)","scallop",2012]
["Bay scallop","Agropecten irradians","Body size","growth",1,"Qin et al. (2007a)","scallop",2007]
["Bay scallop","Agropecten irradians","Shell colour","colour",6,"Qin et al. (2007b)","scallop",2007]
["Blacktip abalone","Haliotis rubra","Growth rate","growth",10,"Baranski et al. (2008)","abalone",2008]
["Pacific oyster","Crassostrea gigas","Shell pigmentation","colour",1,"Ge et al. (2014)","oyster",2014]
["Pacific oyster","Crassostrea gigas","Growth rate","growth",3,"Guo et al. (2012)","oyster",2012]
["Pacific oyster","Crassostrea gigas","Sex","sex",1,"Guo et al. (2012)","oyster",2012]
["European flat oyster","Ostrea edulis","Mortality from Bonamia ostreae infection","disease resistance",5,"Harrang et al. (2015)","oyster",2015]
["European flat oyster","Ostrea edulis","Bonamia ostreae parasite load","disease resistance",1,"Harrang et al. (2015)","oyster",2015]
["Zhikong scallop","Chlamys farrei","Growth","growth",2,"Jiao et al. (2014)","scallop",2014]
["Zhikong scallop","Chlamys farrei","Sex","sex",1,"Jiao et al. (2014)","scallop",2014]
["Silver-lipped pearl oyster","Pinctada maxima","Pearl colour","pearl quality",34,"Jones et al. (2014)","oyster",2014,"9 QTLs and 25 marker associations"]
["Silver-lipped pearl oyster","Pinctada maxima","Pearl surface complexion","pearl quality",1,"Jones et al. (2014)","oyster",2014]
["Silver-lipped pearl oyster","Pinctada maxima","Pearl size and weight","pearl quality",3,"Jones et al. (2014a)","oyster",2014,"3 marker associations"]
["Silver-lipped pearl oyster","Pinctada maxima","Shell height","growth",2,"Jones et al. (2014b)","oyster",2014]
["Silver-lipped pearl oyster","Pinctada maxima","Shell length","growth",4,"Jones et al. (2014b)","oyster",2014,"4 marker associations"]
["Silver-lipped pearl oyster","Pinctada maxima","Shell width","growth",3,"Jones et al. (2014b)","oyster",2014]
["Silver-lipped pearl oyster","Pinctada maxima","Shell weight","growth",1,"Jones et al. (2014b)","oyster",2014]
["European flat oyster","Ostrea edulis","Bonamia ostreae resistance","disease resistance",9,"Lallias et al. (2009)","oyster",2009,"3 marker associations"]
["European flat oyster","Ostrea edulis","Bonamia ostreae susceptibility","disease resistance",6,"Lallias et al. (2009)","oyster",2009,"4 marker associations"]
["European flat oyster","Ostrea edulis","Mortality from Bonamia ostreae infection","disease resistance",3,"Lallias et al. (2009)","oyster",2009]
["Pacific lion-paw scallop","Nodipecten subnodosus","Length","growth",2,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Height","growth",1,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Width","growth",5,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Total mass","growth",2,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Soft tissue mass","growth",1,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Muscle mass","growth",4,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Muscle mass (maturation as covariate)","growth",3,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Size (PCA of six size-related traits)","growth",3,"Peterson et al. (2012)","scallop",2012]
["Pacific lion-paw scallop","Nodipecten subnodosus","Orange shell colour","colour",1,"Peterson et al. (2012)","scallop",2012]
["Pacific oyster","Crassostrea gigas","Viability","viability",14,"Plough and Hedgecock (2011)","oyster",2011,"Officially reported as 14-15"]
["Small abalone","Haliotis diversicolor","Body weight","growth",2,"Ren et al. (2016)","abalone",2016]
["Small abalone","Haliotis diversicolor","Foot muscle weight","growth",5,"Ren et al. (2016)","abalone",2016]
["Small abalone","Haliotis diversicolor","Shell weight","growth",3,"Ren et al. (2016)","abalone",2016]
["Small abalone","Haliotis diversicolor","Shell length","growth",1,"Ren et al. (2016)","abalone",2016]
["Small abalone","Haliotis diversicolor","Shell width","growth",2,"Ren et al. (2016)","abalone",2016]
["Small abalone","Haliotis diversicolor","Shell height","growth",2,"Ren et al. (2016)","abalone",2016]
["Pacific oyster","Crassostrea gigas","Summer mortality","disease resistance",5,"Sauvage et al. (2010)","oyster",2010]
["Pacific oyster","Crassostrea gigas","Ostreid Herpes virus 1 (OsHV-1) load","disease resistance",5,"Sauvage et al. (2010)","oyster",2010]
["Akoya pearl oyster","Pinctada martensii","Shell nacrine nacre thickness","pearl quality",1,"Shi et al. (2014)","oyster",2014]
["Akoya pearl oyster","Pinctada martensii","Inner non-necrine nacre covered shell length","pearl quality",1,"Shi et al. (2014)","oyster",2014]
["Akoya pearl oyster","Pinctada martensii","Hinge line length","growth",1,"Shi et al. (2014)","oyster",2014]
["Akoya pearl oyster","Pinctada martensii","Shell length","growth",1,"Shi et al. (2014)","oyster",2014]
["Akoya pearl oyster","Pinctada martensii","Total weight","growth",2,"Shi et al. (2014)","oyster",2014]
["Akoya pearl oyster","Pinctada martensii","Size","growth",1,"Zhan et al. (2016)","oyster",2016,"Single marker association with four size related traits"]
["Pacific oyster","Crassostrea gigas","Glycogen content","taste",2,"Zhong et al. (2014)","oyster",2014]
["Pacific oyster","Crassostrea gigas","Shell pigmentation","colour",1,"Zhong et al. (2014)","oyster",2014]
["Triangle pearl mussel","Hyriopsis cumingii","Shell width","pearl quality",2,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Body weight","pearl quality",2,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Shell weight","pearl quality",3,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Margin mantle weight","pearl quality",3,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Inner mantle weight","pearl quality",3,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Shell nacre color","pearl quality",10,"Bai et al. (2015)","mussel",2015]
["Triangle pearl mussel","Hyriopsis cumingii","Shell width","pearl quality",3,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Body weight","pearl quality",7,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Shell weight","pearl quality",2,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Margin mantle weight","pearl quality",2,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Inner mantle weight","pearl quality",5,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Purple mantle scar length","pearl quality",1,"Bai et al. (2016)","mussel",2016]
["Triangle pearl mussel","Hyriopsis cumingii","Inner shell colour traits","pearl quality",6,"Bai et al. (2016)","mussel",2016]
["Zhikong scallop","Chlamys farrei","Sex","sex",1,"Li et al. (2005)","scallop",2005]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Shell height","growth",7,"Wang et al. (2016)","oyster",2016]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Shell length","growth",3,"Wang et al. (2016)","oyster",2016]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Shell width","growth",10,"Wang et al. (2016)","oyster",2016]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Soft tissue weight","growth",6,"Wang et al. (2016)","oyster",2016]
["Pacific oyster x Portuguese oyster","Crassostrea gigas x Crassostrea angulata","Mass weight","growth",1,"Wang et al. (2016)","oyster",2016]
["Manila clam","Ruditapes philippinarum","Shell length","growth",3,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Shell height","growth",1,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Shell width","growth",1,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Wet weight","growth",1,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Body weight","growth",1,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Background colour","colour",2,"Nie et al. (2017)","clam",2017]
["Manila clam","Ruditapes philippinarum","Stria","colour",1,"Nie et al. (2017)","clam",2017]
[]
[]
["Significant (not suggestive) results reported"]