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["Supplementary Data 10 - Assemblathon Assembly Stats"]
[]
["Strain","Assembly","Number of scaffolds","Total size of scaffolds","Total scaffold length as percentage of assumed genome size","Useful amount of scaffold sequences (>= 25K nt)","% of estimated genome that is useful","Longest scaffold","Shortest scaffold","Number of scaffolds > 1K nt","Percentage of scaffolds > 1K nt","Number of scaffolds > 10K nt","Percentage of scaffolds > 10K nt","Number of scaffolds > 100K nt","Percentage of scaffolds > 100K nt","Number of scaffolds > 1M nt","Percentage of scaffolds > 1M nt","Number of scaffolds > 10M nt","Percentage of scaffolds > 10M nt","Mean scaffold size","Median scaffold size","N50 scaffold length","L50 scaffold count","NG50 scaffold length","LG50 scaffold count","N50 scaffold - NG50 scaffold length difference","scaffold %A","scaffold %C","scaffold %G","scaffold %T","scaffold %N","scaffold %non-ACGTN","Number of scaffold non-ACGTN nt","Percentage of assembly in scaffolded contigs","Percentage of assembly in unscaffolded contigs","Average number of contigs per scaffold","Average length of break (>25 Ns) between contigs in scaffold","Number of contigs","Number of contigs in scaffolds","Number of contigs not in scaffolds","Total size of contigs","Longest contig","Shortest contig","Number of contigs > 1K nt","Percentage of contigs > 1K nt","Number of contigs > 10K nt","Percentage of contigs > 10K nt","Number of contigs > 100K nt","Percentage of contigs > 100K nt","Number of contigs > 1M nt","Percentage of contigs > 1M nt","Number of contigs > 10M nt","Percentage of contigs > 10M nt","Mean contig size","Median contig size","N50 contig length","L50 contig count","NG50 contig length","LG50 contig count","N50 contig - NG50 contig length difference","contig %A","contig %C","contig %G","contig %T","contig %N","contig %non-ACGTN","Number of contig non-ACGTN nt"]
["129S1_SvImJ","GCA_001624185.1_129S1_SvImJ_v1_genomic.fna.gz",21.0,2.695574028E9,89.9,2.695557728E9,89.9,2.02555645E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.28360668E8,1.27707842E8,1.34541008E8,9.0,1.33061615E8,10.0,1479393.0,24.77,17.79,17.79,24.79,14.86,0.0,0.0,100.0,0.0,12801.4,1487.37929674712,268829.0,268828.0,1.0,2.295754574E9,174459.0,1.0,231006.0,85.9,77236.0,28.7,95.0,0.0,0.0,0.0,0.0,0.0,8540.0,5141.0,15777.0,42333.0,11043.0,69031.0,4734.0,29.09,20.88,20.89,29.11,0.03,0.0,0.0]
["A_J","GCA_001624215.1_A_J_v1_genomic.fna.gz",21.0,2.593688561E9,86.5,2.593672261E9,86.5,1.9420361E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.23508979E8,1.22757293E8,1.46384898E8,8.0,1.2740456E8,10.0,1.8980338E7,26.09,18.68,18.68,26.11,10.43,0.0,0.0,100.0,0.0,12272.0,1047.80212270558,257711.0,257710.0,1.0,2.323680432E9,283529.0,1.0,199160.0,77.3,70680.0,27.4,515.0,0.2,0.0,0.0,0.0,0.0,9017.0,4039.0,21208.0,30195.0,14298.0,49645.0,6910.0,29.12,20.85,20.86,29.15,0.03,0.0,0.0]
["AKR_J","GCA_001624295.1_AKR_J_v1_genomic.fna.gz",21.0,2.669948688E9,89.0,2.669932387E9,89.0,1.99989126E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.27140414E8,1.26111937E8,1.50494929E8,8.0,1.31346752E8,10.0,1.9148177E7,25.39,18.18,18.19,25.42,12.82,0.0,0.0,100.0,0.0,8997.0,1808.88523531498,188938.0,188937.0,1.0,2.328219516E9,272978.0,2.0,156602.0,82.9,71839.0,38.0,768.0,0.4,0.0,0.0,0.0,0.0,12323.0,6331.0,26398.0,25369.0,18620.0,40529.0,7778.0,29.12,20.85,20.86,29.15,0.03,0.0,0.0]
["BALB_cJ","GCA_001632525.1_BALB_cJ_v1_genomic.fna.gz",21.0,2.597474342E9,86.6,2.597458042E9,86.6,1.94908223E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.23689254E8,1.22684579E8,1.46147597E8,8.0,1.27704503E8,10.0,1.8443094E7,25.93,18.59,18.6,25.95,10.93,0.0,0.0,100.0,0.0,12222.5,1103.98777727126,256673.0,256672.0,1.0,2.314132567E9,201280.0,1.0,211960.0,82.6,76937.0,30.0,165.0,0.1,0.0,0.0,0.0,0.0,9016.0,4996.0,17994.0,37029.0,12672.0,59755.0,5322.0,29.1,20.87,20.87,29.13,0.03,0.0,0.0]
["C3H_HeJ","GCA_001632575.1_C3H_HeJ_v1_genomic.fna.gz",21.0,2.672083609E9,89.1,2.672067308E9,89.1,2.0088065E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.27242077E8,1.26529391E8,1.50256143E8,8.0,1.31879273E8,10.0,1.837687E7,25.07,17.98,17.99,25.1,13.86,0.0,0.0,100.0,0.0,13520.0,1302.60169918387,283921.0,283920.0,1.0,2.302273684E9,173484.0,1.0,232303.0,81.8,77278.0,27.2,82.0,0.0,0.0,0.0,0.0,0.0,8109.0,4607.0,15887.0,42171.0,11147.0,68394.0,4740.0,29.1,20.87,20.88,29.13,0.03,0.0,0.0]
["C57BL_6NJ","GCA_001632555.1_C57BL_6NJ_v1_genomic.fna.gz",21.0,2.781986799E9,92.7,2.781970499E9,92.7,2.08915005E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.32475562E8,1.31107661E8,1.39118349E8,9.0,1.39118349E8,9.0,0.0,24.08,17.28,17.28,24.1,17.26,0.0,0.0,100.0,0.0,15440.4,1478.57023628507,324248.0,324247.0,1.0,2.302594407E9,200190.0,0.0,262860.0,81.1,74780.0,23.1,49.0,0.0,0.0,0.0,0.0,0.0,7101.0,4033.0,13800.0,48126.0,9596.0,78471.0,4204.0,29.09,20.88,20.88,29.12,0.03,0.0,0.0]
["CAST_EiJ","GCA_001624445.1_CAST_EiJ_v1_genomic.fna.gz",21.0,2.635074085E9,87.8,2.635057786E9,87.8,2.00424568E8,16299.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.25479718E8,1.26372555E8,1.33752109E8,9.0,1.32173023E8,10.0,1579086.0,25.09,18.05,18.06,25.11,13.7,0.0,0.0,100.0,0.0,15996.5,1072.12042095235,335926.0,335925.0,1.0,2.274943475E9,168179.0,1.0,280359.0,83.5,71982.0,21.4,36.0,0.0,0.0,0.0,0.0,0.0,6772.0,3956.0,12682.0,51437.0,8637.0,86114.0,4045.0,29.06,20.91,20.91,29.08,0.03,0.0,0.0]
["CBA_J","GCA_001624475.1_CBA_J_v1_genomic.fna.gz",21.0,2.884798194E9,96.2,2.884781894E9,96.2,2.16633511E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.37371343E8,1.35960004E8,1.44777665E8,9.0,1.44777665E8,9.0,0.0,23.19,16.65,16.66,23.21,20.29,0.0,0.0,100.0,0.0,14980.3,1858.58474083258,314586.0,314585.0,1.0,2.300152485E9,155926.0,1.0,255856.0,81.3,74492.0,23.7,81.0,0.0,0.0,0.0,0.0,0.0,7312.0,4082.0,14386.0,45744.0,9937.0,75068.0,4449.0,29.08,20.89,20.89,29.11,0.03,0.0,0.0]
["DBA_2J","GCA_001624505.1_DBA_2J_v1_genomic.fna.gz",21.0,2.578809409E9,86.0,2.578793109E9,86.0,1.92928109E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.22800448E8,1.22266228E8,1.44344007E8,8.0,1.26593561E8,10.0,1.7750446E7,25.82,18.56,18.56,25.84,11.22,0.0,0.0,100.0,0.0,14921.6,921.084430940884,313354.0,313353.0,1.0,2.290203261E9,180408.0,1.0,253177.0,80.8,73120.0,23.3,108.0,0.0,0.0,0.0,0.0,0.0,7309.0,3987.0,14576.0,44283.0,9917.0,73867.0,4659.0,29.07,20.9,20.9,29.1,0.03,0.0,0.0]
["FVB_NJ","GCA_001624535.1_FVB_NJ_v1_genomic.fna.gz",21.0,2.557464886E9,85.2,2.557448586E9,85.2,1.91003994E8,16300.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.21784042E8,1.2113778E8,1.44302739E8,8.0,1.25894343E8,10.0,1.8408396E7,26.03,18.68,18.68,26.05,10.56,0.0,0.0,100.0,0.0,11379.0,1126.63679965849,238958.0,238957.0,1.0,2.288269669E9,206033.0,1.0,205195.0,85.9,76927.0,32.2,167.0,0.1,0.0,0.0,0.0,0.0,9576.0,5491.0,18499.0,36126.0,12830.0,59253.0,5669.0,29.09,20.88,20.88,29.11,0.04,0.0,0.0]
["LP_J","GCA_001632615.1_LP_J_v1_genomic.fna.gz",21.0,2.704355636E9,90.1,2.704339335E9,90.1,2.03663563E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.2877884E8,1.27980892E8,1.52319259E8,8.0,1.33211073E8,10.0,1.9108186E7,24.54,17.62,17.63,24.56,15.65,0.0,0.0,100.0,0.0,14887.9,1351.89641903239,312646.0,312645.0,1.0,2.281719018E9,189333.0,0.0,258248.0,82.6,74226.0,23.7,50.0,0.0,0.0,0.0,0.0,0.0,7298.0,4245.0,13897.0,47305.0,9527.0,78549.0,4370.0,29.08,20.89,20.89,29.11,0.03,0.0,0.0]
["NOD_ShiLtJ","GCA_001624675.1_NOD_ShiLtJ_v1_genomic.fna.gz",21.0,2.943750595E9,98.1,2.943734294E9,98.1,2.23333794E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.401786E8,1.37551935E8,1.62030556E8,8.0,1.47352698E8,9.0,1.4677858E7,22.4,16.23,16.23,22.42,22.71,0.0,0.0,100.0,0.0,22249.6,1429.1271413895,467241.0,467240.0,1.0,2.276033812E9,238072.0,1.0,339438.0,72.6,61658.0,13.2,31.0,0.0,0.0,0.0,0.0,0.0,4871.0,2457.0,10216.0,59811.0,6591.0,104052.0,3625.0,28.97,20.99,20.99,29.0,0.04,0.0,0.0]
["NZO_HlLtJ","GCA_001632615.1_LP_J_v1_genomic.fna.gz",21.0,2.704355636E9,90.1,2.704339335E9,90.1,2.03663563E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.2877884E8,1.27980892E8,1.52319259E8,8.0,1.33211073E8,10.0,1.9108186E7,24.54,17.62,17.63,24.56,15.65,0.0,0.0,100.0,0.0,14887.9,1351.89641903239,312646.0,312645.0,1.0,2.281719018E9,189333.0,0.0,258248.0,82.6,74226.0,23.7,50.0,0.0,0.0,0.0,0.0,0.0,7298.0,4245.0,13897.0,47305.0,9527.0,78549.0,4370.0,29.08,20.89,20.89,29.11,0.03,0.0,0.0]
["PWK_PhJ","GCA_001624775.1_PWK_PhJ_v1_genomic.fna.gz",21.0,2.533808356E9,84.5,2.533792055E9,84.5,1.92210263E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.20657541E8,1.223694E8,1.28387505E8,9.0,1.266824E8,10.0,1705105.0,26.5,19.02,19.03,26.52,8.92,0.0,0.0,100.0,0.0,36846.3,291.230138338899,773773.0,773772.0,1.0,2.308468454E9,53652.0,1.0,536340.0,69.3,33010.0,4.3,0.0,0.0,0.0,0.0,0.0,0.0,2983.0,1886.0,5178.0,131882.0,3682.0,211097.0,1496.0,29.09,20.88,20.88,29.11,0.03,0.0,0.0]
["SPRET_EiJ","GCA_001624865.1_SPRET_EiJ_v1_genomic.fna.gz",21.0,2.593026018E9,86.4,2.593009715E9,86.4,1.98846266E8,16303.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.23477429E8,1.26249303E8,1.31945496E8,9.0,1.30317789E8,10.0,1627707.0,26.06,18.61,18.61,26.08,10.64,0.0,0.0,100.0,0.0,11245.0,1165.96600105876,236146.0,236145.0,1.0,2.317712296E9,210578.0,1.0,199074.0,84.3,77480.0,32.8,240.0,0.1,0.0,0.0,0.0,0.0,9815.0,5506.0,19477.0,34677.0,13820.0,55476.0,5657.0,29.15,20.83,20.83,29.18,0.02,0.0,0.0]
["WSB_EiJ","GCA_001624835.1_WSB_EiJ_v1_genomic.fna.gz",21.0,2.671848035E9,89.1,2.671831734E9,89.1,2.00111453E8,16301.0,21.0,100.0,21.0,100.0,20.0,95.2,20.0,95.2,20.0,95.2,1.27230859E8,1.26293791E8,1.33184209E8,9.0,1.3208315E8,10.0,1101059.0,24.53,17.64,17.64,24.55,15.64,0.0,0.0,100.0,0.0,14989.7,1325.28727101747,314783.0,314782.0,1.0,2.254697963E9,161798.0,1.0,269463.0,85.6,72585.0,23.1,27.0,0.0,0.0,0.0,0.0,0.0,7163.0,4362.0,12897.0,50389.0,8732.0,85510.0,4165.0,29.07,20.9,20.9,29.1,0.04,0.0,0.0]

{"sheet":"non-chromosomes","index":1,"n_rows":17,"n_cols":125,"rows_kept":17,"cut":false,"hidden":false,"merged":[]}
["Strain","Assembly","Number of scaffolds","Total size of scaffolds","Total scaffold length as percentage of assumed genome size","Useful amount of scaffold sequences (>= 25K nt)","% of estimated genome that is useful","Longest scaffold","Shortest scaffold","Number of scaffolds > 1K nt","Percentage of scaffolds > 1K nt","Number of scaffolds > 10K nt","Percentage of scaffolds > 10K nt","Number of scaffolds > 100K nt","Percentage of scaffolds > 100K nt","Number of scaffolds > 1M nt","Percentage of scaffolds > 1M nt","Number of scaffolds > 10M nt","Percentage of scaffolds > 10M nt","Mean scaffold size","Median scaffold size","N50 scaffold length","L50 scaffold count","NG50 scaffold length","LG50 scaffold count","N50 scaffold - NG50 scaffold length difference","scaffold %A","scaffold %C","scaffold %G","scaffold %T","scaffold %N","scaffold %non-ACGTN","Number of scaffold non-ACGTN nt","Percentage of assembly in scaffolded contigs","Percentage of assembly in unscaffolded contigs","Average number of contigs per scaffold","Average length of break (>25 Ns) between contigs in scaffold","Number of contigs","Number of contigs in scaffolds","Number of contigs not in scaffolds","Total size of contigs","Longest contig","Shortest contig","Number of contigs > 1K nt","Percentage of contigs > 1K nt","Number of contigs > 10K nt","Percentage of contigs > 10K nt","Number of contigs > 100K nt","Percentage of contigs > 100K nt","Number of contigs > 1M nt","Percentage of contigs > 1M nt","Number of contigs > 10M nt","Percentage of contigs > 10M nt","Mean contig size","Median contig size","N50 contig length","L50 contig count","NG50 contig length","LG50 contig count","N50 contig - NG50 contig length difference","contig %A","contig %C","contig %G","contig %T","contig %N","contig %non-ACGTN","Number of contig non-ACGTN nt"]
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