,pmid_or_unique_identifier,author,region,country_code,year_start,year_end,cv_miru_vntr,cv_spoligotype,cv_pcr,cv_wgs,mtbc_lineage,clustered_cases,total_cases,cv_prop_hiv,cv_prop_resist,cv_mean_age,cv_mean_age_SD,cv_prop_male,cv_prev_tb,cv_eptb,cv_immigrant
1,16970826,Eldholm 2006,africa,TZA,2005,2005,0,1,0,0,Lineage_2,7,7,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown
2,16970826,Eldholm 2006,africa,TZA,2005,2005,0,1,0,0,Lineage_4,27,59,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown
3,16970826,Eldholm 2006,africa,TZA,2005,2005,0,1,0,0,Lineage_3,43,52,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown
4,16970826,Eldholm 2006,africa,TZA,2005,2005,0,1,0,0,Lineage_1,13,27,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown
5,19193842,de Jong 2009,africa,GMB,2007,2007,0,1,0,0,Lineage_4,172,199,0.08,Unknown,29,median,0.69,0,0,Unknown
6,19193842,de Jong 2009,africa,GMB,2007,2007,0,1,0,0,Lineage_2,9,10,0.08,Unknown,29,median,0.69,0,0,Unknown
7,19193842,de Jong 2009,africa,GMB,2007,2007,0,1,0,0,Lineage_1,5,6,0.08,Unknown,29,median,0.69,0,0,Unknown
8,19193842,de Jong 2009,africa,GMB,2007,2007,0,1,0,0,Lineage_Maf,122,138,0.08,Unknown,29,median,0.69,0,0,Unknown
9,19193842,de Jong 2009,africa,GMB,2007,2007,0,1,0,0,Lineage_3,5,6,0.08,Unknown,29,median,0.69,0,0,Unknown
10,22414165,Deribew 2012,africa,ETH,2009,2009,0,1,0,0,Lineage_4,4,9,0.06,Unknown,41,16.2,0.39,0.5,0,Unknown
11,22414165,Deribew 2012,africa,ETH,2009,2009,0,1,0,0,Lineage_3,2,2,0.06,Unknown,41,16.2,0.39,0.5,0,Unknown
12,22414165,Deribew 2012,africa,ETH,2009,2009,0,1,0,0,Lineage_Other,0,6,0.06,Unknown,41,16.2,0.39,0.5,0,Unknown
13,23496968,Tessema 2013,africa,ETH,2009,2009,0,1,0,0,Lineage_3,51,95,0.254,0.215384615,31.6,12.5,0.582,0.165384615,0,0.1
14,23496968,Tessema 2013,africa,ETH,2009,2009,0,1,0,0,Lineage_4,55,125,0.254,0.215384615,31.6,12.5,0.582,0.165384615,0,0.1
15,23496968,Tessema 2013,africa,ETH,2009,2009,0,1,0,0,Lineage_2,0,1,0.254,0.215384615,31.6,12.5,0.582,0.165384615,0,0.1
16,23496968,Tessema 2013,africa,ETH,2009,2009,0,1,0,0,Lineage_Other,4,23,0.254,0.215384615,31.6,12.5,0.582,0.165384615,0,0.1
17,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_4,59,75,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
18,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_Other,0,1,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
19,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_Maf,0,2,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
20,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_Animal,2,2,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
21,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_3,14,17,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
22,24734230,Belay 2014,africa,ETH,2009,2010,0,1,0,0,Lineage_1,5,8,0.39,Unknown,29,median (22.5-40),0.66,0.27,0,Unknown
23,26285026,Bouklata 2015,africa,MAR,2010,2012,0,1,0,0,Lineage_4,134,163,Unknown,0.11,49.5,Unknown,0.74,0.01,0.07,Unknown
24,26285026,Bouklata 2015,africa,MAR,2010,2012,0,1,0,0,Lineage_2,5,5,Unknown,0.11,49.5,Unknown,0.74,0.01,0.07,Unknown
25,26491657,Nuru 2015,africa,ETH,2012,2014,0,1,0,0,Lineage_4,53,88,Unknown,Unknown,Unknown,Unknown,0.48,0.15,0.68,Unknown
26,26491657,Nuru 2015,africa,ETH,2012,2014,0,1,0,0,Lineage_3,41,58,Unknown,Unknown,Unknown,Unknown,0.48,0.15,0.68,Unknown
27,26491657,Nuru 2015,africa,ETH,2012,2014,0,1,0,0,Lineage_1,0,6,Unknown,Unknown,Unknown,Unknown,0.48,0.15,0.68,Unknown
28,26491657,Nuru 2015,africa,ETH,2012,2014,0,1,0,0,Lineage_Maf,2,16,Unknown,Unknown,Unknown,Unknown,0.48,0.15,0.68,Unknown
29,26491657,Nuru 2015,africa,ETH,2012,2014,0,1,0,0,Lineage_Animal,0,2,Unknown,Unknown,Unknown,Unknown,0.48,0.15,0.68,Unknown
30,26927993,Uzoewulu 2016,africa,NGA,2009,2011,1,0,0,0,Lineage_4,134,152,0.19,Unknown,35,Unknown,0.61,0.16,Unknown,Unknown
31,26927993,Uzoewulu 2016,africa,NGA,2009,2011,1,0,0,0,Lineage_Maf,6,21,0.19,Unknown,35,Unknown,0.61,0.16,Unknown,Unknown
32,26927993,Uzoewulu 2016,africa,NGA,2009,2011,1,0,0,0,Lineage_1,7,7,0.19,Unknown,35,Unknown,0.61,0.16,Unknown,Unknown
33,27149626,Mbugi 2016,africa,TZA,2010,2012,0,1,0,0,Lineage_1,7,11,0.1,Unknown,25.1,Unknown,0.53,Unknown,Unknown,Unknown
34,27149626,Mbugi 2016,africa,TZA,2010,2012,0,1,0,0,Lineage_3,7,11,0.1,Unknown,25.1,Unknown,0.53,Unknown,Unknown,Unknown
35,27149626,Mbugi 2016,africa,TZA,2010,2012,0,1,0,0,Lineage_4,14,31,0.1,Unknown,25.1,Unknown,0.53,Unknown,Unknown,Unknown
36,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_1,12,17,0.13,0.1,39,median,0.69,Unknown,0,Unknown
37,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_2,38,39,0.13,0.1,39,median,0.69,Unknown,0,Unknown
38,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_3,10,14,0.13,0.1,39,median,0.69,Unknown,0,Unknown
39,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_4,836,865,0.13,0.1,39,median,0.69,Unknown,0,Unknown
40,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_Other,0,1,0.13,0.1,39,median,0.69,Unknown,0,Unknown
41,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_Maf,213,262,0.13,0.1,39,median,0.69,Unknown,0,Unknown
42,27506391,Asante-Poku 2016,africa,GHA,2012,2013,0,0,1,0,Lineage_Animal,2,7,0.13,0.1,39,median,0.69,Unknown,0,Unknown
43,28230095,Perdigão 2017,africa,AGO,2014,2014,0,1,0,0,Lineage_4,64,88,0.15,0.25,Unknown,Unknown,Unknown,0.11,0,Unknown
44,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_3,197,1582,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
45,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_2,1259,4924,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
46,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_4,5857,23441,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
47,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_1,1000,5760,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
48,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_Maf,25,179,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
49,22377473,Moonan 2012,america_europe,USA,2005,2009,1,0,0,0,Lineage_Animal,127,572,0.913,Unknown,Unknown,Unknown,0.66,0.05,0.22,Unknown
50,22982156,Rodwell 2012,america_europe,USA_527,2005,2008,0,1,0,0,Lineage_1,160,257,0.123287671,Unknown,Unknown,Unknown,0.649038462,0.058894231,0.313701923,0.776442308
51,22982156,Rodwell 2012,america_europe,USA_527,2005,2008,0,1,0,0,Lineage_4,253,468,0.123287671,Unknown,Unknown,Unknown,0.649038462,0.058894231,0.313701923,0.776442308
52,22982156,Rodwell 2012,america_europe,USA_527,2005,2008,0,1,0,0,Lineage_2,58,79,0.123287671,Unknown,Unknown,Unknown,0.649038462,0.058894231,0.313701923,0.776442308
53,22982156,Rodwell 2012,america_europe,USA_527,2005,2008,0,1,0,0,Lineage_3,9,28,0.123287671,Unknown,Unknown,Unknown,0.649038462,0.058894231,0.313701923,0.776442308
54,24098337,Gomes 2013,america_europe,BRA_4757,1998,2007,0,1,0,0,Lineage_1,0,1,0.13,0.06,35.9,median,0.7,Unknown,0.23,Unknown
55,24098337,Gomes 2013,america_europe,BRA_4757,1998,2007,0,1,0,0,Lineage_2,0,1,0.13,0.06,35.9,median,0.7,Unknown,0.23,Unknown
56,24098337,Gomes 2013,america_europe,BRA_4757,1998,2007,0,1,0,0,Lineage_4,432,461,0.13,0.06,35.9,median,0.7,Unknown,0.23,Unknown
57,24098337,Gomes 2013,america_europe,BRA_4757,1998,2007,0,1,0,0,Lineage_Other,37,43,0.13,0.06,35.9,median,0.7,Unknown,0.23,Unknown
58,25671320,Balcells 2015,america_europe,CHL,2008,2013,1,0,0,0,Lineage_2,2,2,Unknown,Unknown,Unknown,Unknown,0.612,Unknown,0,0.116
59,25671320,Balcells 2015,america_europe,CHL,2008,2013,1,0,0,0,Lineage_4,47,83,Unknown,Unknown,Unknown,Unknown,0.612,Unknown,0,0.116
60,25671320,Balcells 2015,america_europe,CHL,2008,2013,1,0,0,0,Lineage_3,0,2,Unknown,Unknown,Unknown,Unknown,0.612,Unknown,0,0.116
61,25809979,Barletta 2015,america_europe,PER,2010,2011,1,1,0,0,Lineage_2,77,130,Unknown,0.28,Unknown,Unknown,0.61,0,0,Unknown
62,25809979,Barletta 2015,america_europe,PER,2010,2011,1,1,0,0,Lineage_4,336,463,Unknown,0.28,Unknown,Unknown,0.61,0,0,Unknown
63,25809979,Barletta 2015,america_europe,PER,2010,2011,1,1,0,0,Lineage_Other,142,198,Unknown,0.28,Unknown,Unknown,0.61,0,0,Unknown
64,27518286,Lagos 2016,america_europe,CHL,2011,2012,1,0,0,0,Lineage_2,2,2,Unknown,Unknown,Unknown,Unknown,0.66,0,Unknown,Unknown
65,27518286,Lagos 2016,america_europe,CHL,2011,2012,1,0,0,0,Lineage_3,0,1,Unknown,Unknown,Unknown,Unknown,0.66,0,Unknown,Unknown
66,27518286,Lagos 2016,america_europe,CHL,2011,2012,1,0,0,0,Lineage_4,323,404,Unknown,Unknown,Unknown,Unknown,0.66,0,Unknown,Unknown
67,27518286,Lagos 2016,america_europe,CHL,2011,2012,1,0,0,0,Lineage_Maf,0,1,Unknown,Unknown,Unknown,Unknown,0.66,0,Unknown,Unknown
68,28317799,Almaraz-Velasco 2017,america_europe,MEX,2014,2015,0,1,0,0,Lineage_4,22,24,0,0.225,42,17,0.65,0,0,Unkown
69,28317799,Almaraz-Velasco 2017,america_europe,MEX,2014,2015,0,1,0,0,Lineage_1,7,7,0,0.225,42,17,0.65,0,0,Unkown
70,28317799,Almaraz-Velasco 2017,america_europe,MEX,2014,2015,0,1,0,0,Lineage_Other,42,48,0,0.225,42,17,0.65,0,0,Unkown
71,21439097,Dymova 2011,america_europe,UKR,2004,2004,0,1,0,0,Lineage_2,18,32,Unkown,Unkown,Unkown,Unkown,Unkown,0.63,0,Unkown
72,21439097,Dymova 2011,america_europe,UKR,2004,2004,0,1,0,0,Lineage_4,9,30,Unkown,Unkown,Unkown,Unkown,Unkown,0.63,0,Unkown
73,21439097,Dymova 2011,america_europe,UKR,2004,2004,0,1,0,0,Lineage_Other,4,36,Unkown,Unkown,Unkown,Unkown,Unkown,0.63,0,Unkown
74,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_1,122,384,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
75,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_3,142,328,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
76,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_2,126,274,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
77,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_Animal,21,62,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
78,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_Maf,20,59,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
79,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_Other,7,48,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
80,23658260,Sloot 2013,america_europe,NLD,2003,2008,0,1,0,0,Lineage_4,1319,2621,Unknown,Unknown,Unknown,Unknown,0.582097458,0.062764831,0.443061441,Unknown
81,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_2,12,37,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
82,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_1,0,19,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
83,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_3,16,51,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
84,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_4,289,773,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
85,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_Maf,2,16,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
86,28222189,Vluggen 2017,america_europe,BEL,2010,2013,1,0,0,0,Lineage_Animal,2,14,0.08,0.09,38.4,18,0.64,0.07,0.24,0.76
87,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_2,98,100,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
88,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_1,134,149,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
89,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_Maf,0,1,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
90,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_4,20,32,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
91,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_3,9,15,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
92,19036933,Phyu 2009,east_asia,MMR,2002,2002,0,1,0,0,Lineage_Other,0,13,Unknown,0.33,36.6,Unknown,0.7,0.44,0,Unknown
93,22912700,Buu 2012,east_asia,VNM,2003,2006,1,0,0,0,Lineage_2,292,786,Unkown,0.284549162,Unkown,Unkown,0.75,0.1,0,Unkown
94,22912700,Buu 2012,east_asia,VNM,2003,2006,1,0,0,0,Lineage_1,527,803,Unkown,0.284549162,Unkown,Unkown,0.75,0.1,0,Unkown
95,22912700,Buu 2012,east_asia,VNM,2003,2006,1,0,0,0,Lineage_Other,45,412,Unkown,0.284549162,Unkown,Unkown,0.75,0.1,0,Unkown
96,22912700,Buu 2012,east_asia,VNM,2003,2006,1,0,0,0,Lineage_4,70,200,Unkown,0.284549162,Unkown,Unkown,0.75,0.1,0,Unkown
97,22912700,Buu 2012,east_asia,VNM,2003,2006,1,0,0,0,Lineage_3,0,6,Unkown,0.284549162,Unkown,Unkown,0.75,0.1,0,Unkown
98,25629610,Chen 2015,east_asia,TWN,2000,2008,1,1,0,0,Lineage_2,53,176,Unkown,0.15,Unkown,Unkown,Unkown,Unkown,Unkown,Unkown
99,25629610,Chen 2015,east_asia,TWN,2000,2008,1,1,0,0,Lineage_1,73,120,Unkown,0.15,Unkown,Unkown,Unkown,Unkown,Unkown,Unkown
100,25629610,Chen 2015,east_asia,TWN,2000,2008,1,1,0,0,Lineage_4,8,92,Unkown,0.15,Unkown,Unkown,Unkown,Unkown,Unkown,Unkown
101,25629610,Chen 2015,east_asia,TWN,2000,2008,1,1,0,0,Lineage_Other,2,33,Unkown,0.15,Unkown,Unkown,Unkown,Unkown,Unkown,Unkown
102,28333978,Zhou 2017,east_asia,CHN,2007,2007,0,1,0,0,Lineage_2,1061,2208,Unknown,0.32,Unknown,Unknown,Unknown,0.25,0,Unknown
103,28333978,Zhou 2017,east_asia,CHN,2007,2007,0,1,0,0,Lineage_4,121,686,Unknown,0.32,Unknown,Unknown,Unknown,0.25,0,Unknown
104,28333978,Zhou 2017,east_asia,CHN,2007,2007,0,1,0,0,Lineage_Other,21,239,Unknown,0.32,Unknown,Unknown,Unknown,0.25,0,Unknown
105,19108722,Tanveer 2008,west_asia,PAK,2003,2005,0,1,0,0,Lineage_3,546,568,Unknown,0.67,Unknown,Unknown,0.55,Unknown,0.08,Unknown
106,19108722,Tanveer 2008,west_asia,PAK,2003,2005,0,1,0,0,Lineage_1,41,42,Unknown,0.67,Unknown,Unknown,0.55,Unknown,0.08,Unknown
107,19108722,Tanveer 2008,west_asia,PAK,2003,2005,0,1,0,0,Lineage_2,25,25,Unknown,0.67,Unknown,Unknown,0.55,Unknown,0.08,Unknown
108,19108722,Tanveer 2008,west_asia,PAK,2003,2005,0,1,0,0,Lineage_4,35,40,Unknown,0.67,Unknown,Unknown,0.55,Unknown,0.08,Unknown
109,21394425,Mäkinen 2011,west_asia,RUS,2003,2004,0,1,0,0,Lineage_2,193,193,Unknown,0.67,Unknown,Unknown,Unknown,0.64,Unknown,Unknown
110,21394425,Mäkinen 2011,west_asia,RUS,2003,2004,0,1,0,0,Lineage_4,190,190,Unknown,0.67,Unknown,Unknown,Unknown,0.64,Unknown,Unknown
111,21394425,Mäkinen 2011,west_asia,RUS,2003,2004,0,1,0,0,Lineage_1,2,2,Unknown,0.67,Unknown,Unknown,Unknown,0.64,Unknown,Unknown
112,21394425,Mäkinen 2011,west_asia,RUS,2003,2004,0,1,0,0,Lineage_Animal,2,2,Unknown,0.67,Unknown,Unknown,Unknown,0.64,Unknown,Unknown
113,22844457,Mokrousov 2012,west_asia,RUS,2008,2009,0,1,0,0,Lineage_2,40,40,0,0.62,Unknown,Unknown,0.66,0.28,Unknown,Unknown
114,22844457,Mokrousov 2012,west_asia,RUS,2008,2009,0,1,0,0,Lineage_4,43,47,0,0.62,Unknown,Unknown,0.66,0.28,Unknown,Unknown
115,22844457,Mokrousov 2012,west_asia,RUS,2008,2009,0,1,0,0,Lineage_Other,2,3,0,0.62,Unknown,Unknown,0.66,0.28,Unknown,Unknown
116,26679959,Mokrousov 2015,west_asia,RUS,2013,2014,1,0,0,0,Lineage_2,42,44,Unkown,0.58974359,43.4,13.9,0.717948718,0.884615385,Unkown,0
117,26679959,Mokrousov 2015,west_asia,RUS,2013,2014,1,0,0,0,Lineage_4,20,33,Unkown,0.58974359,43.4,13.9,0.717948718,0.884615385,Unkown,0
118,26679959,Mokrousov 2015,west_asia,RUS,2013,2014,1,0,0,0,Lineage_3,0,1,Unkown,0.58974359,43.4,13.9,0.717948718,0.884615385,Unkown,0
119,26786944,Merza 2012,west_asia,IRQ,2008,2009,1,0,0,0,Lineage_3,4,12,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,0,Unknown
120,26786944,Merza 2012,west_asia,IRQ,2008,2009,1,0,0,0,Lineage_4,6,36,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,0,Unknown
121,26786944,Merza 2012,west_asia,IRQ,2008,2009,1,0,0,0,Lineage_1,0,1,Unknown,Unknown,Unknown,Unknown,Unknown,Unknown,0,Unknown