chr1 29744 29792 chr1,29744,29792,+,(ACGCCC)n,Simple_repeat,Simple_repeat,1,50,0,29744,29792 +6 + chr1 29901 30039 chr1,29901,30198,+,L1MB3,LINE,L1,5883,6181,-2,24019,30200 +4 + chr1 30342 30532 chr1,30342,30532,-,MER53,DNA,hAT,0,193,1,30342,30532 -6 - chr1 30976 31109 chr1,30952,31131,+,MLT1A,LTR,ERVL-MaLR,173,349,-25,30780,31156 +5 + chr1 34564 34921 chr1,34564,34921,-,MLT1J2,LTR,ERVL-MaLR,0,448,41,34564,34961 +6 - chr1 35245 35366 chr1,35216,35366,-,MIRb,SINE,MIR,-13,255,91,35203,35456 +5 - chr1 35366 35481 chr1,35366,35499,+,AluJr,SINE,Alu,1,133,-179,35366,35678 -2 + chr1 89295 89381 chr1,89285,89381,-,L1M5,LINE,L1,-723,5471,5370,88562,94750 +5 - chr1 89858 90056 chr1,89858,90056,+,MLT1H2,LTR,ERVL-MaLR,68,278,-271,89791,90327 -6 + chr1 90442 90576 chr1,90442,90576,+,MLT1H2,LTR,ERVL-MaLR,374,515,-34,90069,90610 -6 + chr1 90607 90636 chr1,90607,90636,+,(CTGT)n,Simple_repeat,Simple_repeat,1,29,0,90607,90636 -6 + chr1 90920 91213 chr1,90920,91213,+,AluY,SINE,Alu,1,294,-17,90920,91230 -1 + chr1 91608 91629 chr1,91608,91677,-,MER4D1,LTR,ERV1,0,903,827,91608,92503 +2 - chr1 92091 92110 chr1,91677,92110,+,MER4CL34,LTR,ERV1,1,763,-2,91677,92112 -4 + chr1 92113 92240 chr1,92113,92392,-,MER4D1,LTR,ERV1,-72,828,537,92041,92928 +5 - chr1 111002 111049 chr1,111002,111049,-,MIR,SINE,MIR,-113,149,100,110889,111148 +6 - chr1 111080 111357 chr1,111080,111386,+,AluSq2,SINE,Alu,1,305,-8,111080,111394 -2 + chr1 139790 139847 chr1,139707,140127,-,MER1A,DNA,hAT-Charlie,-90,439,1,139617,140127 +5 - chr1 140075 140127 chr1,139707,140127,-,MER1A,DNA,hAT-Charlie,-90,439,1,139617,140127 +5 - chr1 141474 141597 chr1,141290,141597,-,AluJb,SINE,Alu,-18,294,2,141272,141598 +5 - chr1 141597 141667 chr1,141597,141667,+,MER21C,LTR,ERVL,528,605,-333,141070,142000 -6 + chr1 141667 141970 chr1,141667,141970,+,AluJr,SINE,Alu,1,302,-10,141667,141980 -6 + chr1 141970 142271 chr1,141970,142271,+,MER21C,LTR,ERVL,606,919,-19,141365,142290 -6 + chr1 142307 142506 chr1,142307,142506,+,MIRb,SINE,MIR,3,206,-62,142305,142568 -6 + chr1 142765 142869 chr1,142765,142869,+,L2b,LINE,L2,3053,3164,-211,139713,143080 -5 + chr1 146386 146522 chr1,146228,146522,+,AluJr,SINE,Alu,5,294,-18,146224,146540 -5 + chr1 146775 147047 chr1,146775,147047,+,AluJr,SINE,Alu,1,299,-13,146775,147060 -1 + chr1 147061 147161 chr1,147061,147161,-,AluJr4,SINE,Alu,-147,165,81,146914,147241 +6 - chr1 147161 147431 chr1,147161,147431,+,AluSx,SINE,Alu,1,275,-37,147161,147468 -6 + chr1 147433 147475 chr1,147433,147475,+,(CAA)n,Simple_repeat,Simple_repeat,1,42,0,147433,147475 -6 + chr1 147475 147535 chr1,147475,147535,-,AluJr4,SINE,Alu,-232,80,24,147243,147558 +6 - chr1 147594 147625 chr1,147594,147625,+,L1MB8,LINE,L1,5476,5505,-679,142119,148304 -6 + chr1 147625 147917 chr1,147625,147917,+,AluJb,SINE,Alu,1,293,-19,147625,147936 -6 + chr1 147917 148005 chr1,147917,148005,+,L1MB8,LINE,L1,5506,5592,-572,142412,148577 -6 + chr1 148039 148150 chr1,148039,148150,-,FLAM_A,SINE,Alu,-28,114,4,148011,148153 +6 - chr1 148150 148770 chr1,148150,148770,+,L1MB8,LINE,L1,5552,6173,-5,142599,148775 -6 + chr1 148791 149093 chr1,148791,149093,+,AluJr,SINE,Alu,1,302,-10,148791,149103 -6 + chr1 149096 149211 chr1,149096,149211,-,Tigger12,DNA,TcMar-Tigger,-2210,265,148,146886,149358 +6 - chr1 149395 149703 chr1,149395,149703,+,AluSq2,SINE,Alu,1,307,-6,149395,149709 -6 + chr1 161314 161525 chr1,161299,161705,+,L1MC5a,LINE,L1,1428,1819,-958,159872,162663 +5 + chr1 164358 164695 chr1,164358,164695,+,AluSq2,SINE,Alu,1,305,-8,164358,164703 -6 + chr1 168610 168767 chr1,168484,168786,+,AluYh3,SINE,Alu,2,301,-10,168483,168796 -1 + chr1 169049 169264 chr1,168914,169342,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,168914,169344 -3 + chr1 257864 257931 chr1,257863,257931,-,MLT2B3,LTR,ERVL,-482,72,3,257381,257933 +5 - chr1 257956 258024 chr1,257956,258024,-,MLT2B3,LTR,ERVL,-482,72,3,257474,258026 +6 - chr1 258027 258474 chr1,258027,258474,+,MER31-int,LTR,ERV1,1063,1506,-3430,256965,261904 -5 + chr1 258954 258989 chr1,258954,258989,+,(TTGGCT)n,Simple_repeat,Simple_repeat,1,35,0,258954,258989 -6 + chr1 266671 267153 chr1,266671,267153,+,MLT1H2,LTR,ERVL-MaLR,68,515,-34,266604,267187 -6 + chr1 267184 267213 chr1,267184,267213,+,(CTGT)n,Simple_repeat,Simple_repeat,1,29,0,267184,267213 -6 + chr1 267497 267793 chr1,267497,267793,+,AluY,SINE,Alu,1,297,-14,267497,267807 -6 + chr1 268183 268204 chr1,268183,268253,-,MER4D1,LTR,ERV1,0,900,824,268183,269076 +2 - chr1 268689 268816 chr1,268689,268968,-,MER4D1,LTR,ERV1,-72,828,537,268617,269504 +1 - chr1 287566 287613 chr1,287566,287613,-,MIR,SINE,MIR,-113,149,100,287453,287712 +6 - chr1 287644 287921 chr1,287644,287950,+,AluSq2,SINE,Alu,1,305,-8,287644,287958 -2 + chr1 357565 357586 chr1,357565,357635,-,MER4D1,LTR,ERV1,0,900,824,357565,358458 +2 - chr1 358049 358067 chr1,357635,358067,+,MER4A,LTR,ERV1,1,763,-2,357635,358069 -4 + chr1 358067 358183 chr1,358067,358859,-,MER4D1,LTR,ERV1,-68,832,2,357999,358860 +1 - chr1 365404 365585 chr1,365404,365585,-,L1M5,LINE,L1,-340,5784,5606,365064,371190 -5 - chr1 365404 365585 chr1,365404,365585,-,L1M5,LINE,L1,-340,5784,5606,365064,371190 +5 - chr1 365675 365704 chr1,365675,366144,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,364351,366145 +5 + chr1 365675 365692 chr1,365675,366144,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,364351,366145 -5 + chr1 366019 366120 chr1,365675,366144,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,364351,366145 -5 + chr1 368251 368313 chr1,368211,368313,+,Charlie20a,DNA,hAT-Charlie,436,538,-269,367776,368582 -4 + chr1 368313 368450 chr1,368313,368609,-,AluSx1,SINE,Alu,-13,299,2,368300,368610 +1 - chr1 373144 373323 chr1,372919,373494,-,L1MC4a,LINE,L1,-1458,6537,5936,371461,379429 +5 - chr1 484832 484878 chr1,484579,484878,-,AluSq2,SINE,Alu,-13,300,2,484566,484879 +5 - chr1 484878 485004 chr1,484878,485004,-,L2a,LINE,L2,-108,3318,3190,484770,488193 +6 - chr1 494992 495049 chr1,494909,495329,-,MER1A,DNA,hAT-Charlie,-90,439,1,494819,495329 +3 - chr1 495277 495329 chr1,494909,495329,-,MER1A,DNA,hAT-Charlie,-90,439,1,494819,495329 +4 - chr1 496264 496392 chr1,496251,496392,-,AluJo,SINE,Alu,-170,142,11,496081,496402 +4 - chr1 496628 496665 chr1,496628,496928,-,AluJr,SINE,Alu,-16,296,1,496612,496928 +1 - chr1 497109 497139 chr1,497037,497139,-,MER8,DNA,TcMar-Tigger,-2,237,137,497035,497275 +5 - chr1 497139 497299 chr1,497139,497327,+,AluJb,SINE,Alu,117,303,-9,497023,497336 -1 + chr1 498047 498062 chr1,497905,498062,+,AluJr,SINE,Alu,9,173,-139,497897,498201 -4 + chr1 498399 498456 chr1,498316,498736,-,MER1A,DNA,hAT-Charlie,-90,439,1,498226,498736 +1 - chr1 498684 498736 chr1,498316,498736,-,MER1A,DNA,hAT-Charlie,-90,439,1,498226,498736 +1 - chr1 499021 499101 chr1,499021,499101,+,FLAM_A,SINE,Alu,38,117,-25,498984,499126 -6 + chr1 499103 499369 chr1,499103,499393,+,AluJo,SINE,Alu,44,299,-13,499060,499406 -1 + chr1 586337 586358 chr1,586337,586407,-,MER4D1,LTR,ERV1,0,900,824,586337,587230 +2 - chr1 586821 586839 chr1,586407,586839,+,MER4CL34,LTR,ERV1,1,763,-2,586407,586841 -4 + chr1 586839 586955 chr1,586839,587631,-,MER4D1,LTR,ERV1,-68,832,2,586771,587632 +1 - chr1 594468 594685 chr1,594468,594685,-,L1ME4c,LINE,L1,-340,5784,5606,594128,600290 -5 - chr1 594468 594685 chr1,594468,594685,-,L1ME4c,LINE,L1,-340,5784,5606,594128,600290 +5 - chr1 594739 594768 chr1,594739,595208,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,593415,595209 +5 + chr1 594739 594756 chr1,594739,595208,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,593415,595209 -5 + chr1 595083 595208 chr1,594739,595208,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,593415,595209 -5 + chr1 597299 597361 chr1,597259,597361,+,Charlie20a,DNA,hAT-Charlie,436,538,-269,596824,597630 -4 + chr1 597361 597498 chr1,597361,597657,-,AluSx1,SINE,Alu,-13,299,2,597348,597658 +1 - chr1 601436 601577 chr1,601173,601768,-,L1MD3,LINE,L1,-1457,6538,5913,599716,607680 +5 - chr1 627421 627529 chr1,627421,627529,+,L2c,LINE,L2,3286,3386,-1,624136,627530 -6 + chr1 628208 628223 chr1,628208,628354,-,MIRb,SINE,MIR,-80,188,50,628128,628403 +2 - chr1 702063 702340 chr1,702063,702369,+,AluSq2,SINE,Alu,1,305,-8,702063,702377 -2 + chr1 703699 703789 chr1,703699,703832,+,MIRc,SINE,MIR,91,229,-39,703609,703871 -2 + chr1 741813 741936 chr1,741629,741936,-,AluJb,SINE,Alu,-18,294,2,741611,741937 +5 - chr1 741936 742006 chr1,741936,742006,+,MER21C,LTR,ERVL,528,605,-333,741409,742339 -6 + chr1 742006 742309 chr1,742006,742309,+,AluJr,SINE,Alu,1,302,-10,742006,742319 -6 + chr1 742309 742610 chr1,742309,742610,+,MER21C,LTR,ERVL,606,919,-19,741704,742629 -6 + chr1 742646 742845 chr1,742646,742845,+,MIRb,SINE,MIR,3,206,-62,742644,742907 -6 + chr1 743104 743208 chr1,743104,743208,+,L2b,LINE,L2,3053,3164,-211,740052,743419 -6 + chr1 746695 746831 chr1,746537,746831,+,AluJr,SINE,Alu,5,294,-18,746533,746849 -4 + chr1 747085 747357 chr1,747085,747357,+,AluJr,SINE,Alu,1,299,-13,747085,747370 -6 + chr1 747367 747467 chr1,747367,747467,-,AluJr4,SINE,Alu,-147,165,71,747220,747537 +6 - chr1 747467 747743 chr1,747467,747743,+,AluSx,SINE,Alu,1,285,-27,747467,747770 -6 + chr1 747743 747784 chr1,747743,747784,+,(AAC)n,Simple_repeat,Simple_repeat,1,41,0,747743,747784 -6 + chr1 747790 747844 chr1,747790,747844,-,AluJr4,SINE,Alu,-242,70,24,747548,747867 +6 - chr1 747903 747934 chr1,747903,747934,+,L1MB8,LINE,L1,5476,5505,-679,742428,748613 -6 + chr1 747934 748226 chr1,747934,748226,+,AluJb,SINE,Alu,1,293,-19,747934,748245 -6 + chr1 748226 748311 chr1,748226,748311,+,L1MB8,LINE,L1,5494,5578,-2304,742733,750615 -6 + chr1 748348 748462 chr1,748348,748462,-,FLAM_A,SINE,Alu,-28,114,1,748320,748462 +6 - chr1 748462 749079 chr1,748462,749079,+,L1MB8,LINE,L1,5555,6173,-5,742908,749084 -6 + chr1 749100 749402 chr1,749100,749402,+,AluJr,SINE,Alu,1,302,-10,749100,749412 -6 + chr1 749405 749520 chr1,749405,749520,-,Tigger12,DNA,TcMar-Tigger,-2210,265,148,747195,749667 +6 - chr1 749704 750012 chr1,749704,750012,+,AluSq2,SINE,Alu,1,307,-6,749704,750018 -6 + chr1 761778 761989 chr1,761763,762169,+,L1MC5a,LINE,L1,1428,1819,-958,760336,763127 +5 + chr1 764818 765151 chr1,764818,765151,+,AluSq2,SINE,Alu,1,301,-12,764818,765163 -5 + chr1 769497 769712 chr1,769362,769790,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,769362,769792 -3 + chr1 773082 773107 chr1,773082,773132,+,L2c,LINE,L2,3243,3303,-84,769840,773216 -2 + chr1 778284 778442 chr1,778254,778442,-,FRAM,SINE,Alu,-8,294,45,778246,778486 +4 - chr1 784370 784744 chr1,784343,784744,+,L1MC4,LINE,L1,6692,7086,-956,777652,785700 +1 + chr1 784745 784977 chr1,784745,785369,+,L1MC4,LINE,L1,7209,7900,-142,777537,785511 +5 + chr1 785993 786249 chr1,785993,786249,-,LTR104_Mam,LTR,Gypsy,-861,648,367,785132,786615 -6 - chr1 786261 786313 chr1,786261,786313,+,BLACKJACK,DNA,hAT-Blackjack,1,52,-2917,786261,789230 +6 + chr1 786313 786376 chr1,786313,786376,-,L1M3,LINE,L1,-921,5219,5166,785392,791541 -6 - chr1 786376 786507 chr1,786376,786507,-,AluJr,SINE,Alu,-181,131,1,786195,786507 -6 - chr1 786507 787339 chr1,786507,787339,-,L1M3,LINE,L1,-975,5165,4337,785532,791675 -5 - chr1 787351 787672 chr1,787351,787718,+,LTR7,LTR,ERV1,1,450,0,787351,787718 +5 + chr1 792882 793041 chr1,792382,793725,-,L1M7,LINE,L1,-3822,2393,995,788560,794719 -3 - chr1 795470 795582 chr1,795361,795592,+,Charlie1b,DNA,hAT-Charlie,4,264,-259,795358,795851 +5 + chr1 801607 801715 chr1,801588,801715,-,AluJo,SINE,Alu,-185,127,1,801403,801715 -2 - chr1 807401 807465 chr1,807401,807502,+,MLT1O,LTR,ERVL-MaLR,425,522,-20,806977,807522 +5 + chr1 818039 818201 chr1,818039,818201,-,MER58A,DNA,hAT-Charlie,-51,173,1,817988,818201 -6 - chr1 818723 818794 chr1,818621,818794,+,MER102c,DNA,hAT-Charlie,68,251,-80,818554,818874 +2 + chr1 819065 819303 chr1,819065,819303,+,MLT1I,LTR,ERVL-MaLR,118,378,-33,818948,819336 +6 + chr1 819609 819650 chr1,819609,819650,-,L2c,LINE,L2,-61,3326,3286,819548,822935 -6 - chr1 819730 819837 chr1,819730,819948,+,MER44D,DNA,TcMar-Tigger,11,228,-477,819720,820425 +5 + chr1 827608 827629 chr1,827541,827629,+,G-rich,Low_complexity,Low_complexity,1,89,0,827541,827629 +1 + chr1 829003 829104 chr1,828986,829262,-,AluSq2,SINE,Alu,-21,292,3,828965,829264 -3 - chr1 841507 841658 chr1,841507,841658,+,MER5A1,DNA,hAT-Charlie,2,164,-2,841506,841660 +6 + chr1 841662 841828 chr1,841662,841828,+,MIRb,SINE,MIR,85,258,-10,841578,841838 +5 + chr1 849556 849602 chr1,849556,849911,-,MSTD,LTR,ERVL-MaLR,0,396,2,849556,849912 -5 - chr1 853391 853435 chr1,853263,853435,-,Charlie19a,DNA,hAT-Charlie,-3,383,197,853260,853631 -2 - chr1 855215 855298 chr1,855215,855298,+,(TGTGCA)n,Simple_repeat,Simple_repeat,1,87,0,855215,855298 +6 + chr1 855394 855476 chr1,855394,855476,+,(TG)n,Simple_repeat,Simple_repeat,1,82,0,855394,855476 +6 + chr1 858969 859039 chr1,858969,859039,-,L3,LINE,CR1,0,4099,4030,858969,863068 -6 - chr1 859351 859446 chr1,859351,859744,-,L1ME4a,LINE,L1,-209,5915,5504,859142,865247 -5 - chr1 874304 874344 chr1,874304,874344,+,GA-rich,Low_complexity,Low_complexity,1,40,0,874304,874344 -6 + chr1 911945 911997 chr1,911851,911997,-,MIRc,SINE,MIR,-32,236,80,911819,912076 -2 - chr1 912319 912400 chr1,912319,912400,+,MIRb,SINE,MIR,137,219,-49,912183,912449 +6 + chr1 912462 912649 chr1,912462,912649,-,L2b,LINE,L2,-100,3275,3096,912362,915744 -6 - chr1 912841 912915 chr1,912841,912915,+,L2b,LINE,L2,3294,3371,-4,909548,912919 +6 + chr1 913580 913633 chr1,913580,913633,+,G-rich,Low_complexity,Low_complexity,1,53,0,913580,913633 +6 + chr1 914455 914665 chr1,914455,914665,+,L1MEc,LINE,L1,180,441,-5959,914276,920624 +6 + chr1 914665 914971 chr1,914665,914977,+,AluSp,SINE,Alu,3,312,-1,914663,914978 +5 + chr1 915750 915837 chr1,915716,915837,-,MIRc,SINE,MIR,-46,162,41,915670,915877 -2 - chr1 919106 919193 chr1,919106,919193,-,L2c,LINE,L2,-18,3369,3281,919088,922473 +6 - chr1 997104 997178 chr1,997104,997178,-,L2b,LINE,L2,-47,3328,3248,997057,1000425 +6 - chr1 1011997 1012064 chr1,1011414,1012064,-,L1MB5,LINE,L1,0,6174,5488,1011414,1017551 +5 - chr1 1012064 1012190 chr1,1012064,1012375,-,AluSx,SINE,Alu,-4,308,1,1012060,1012375 +2 - chr1 1012917 1013057 chr1,1012746,1013057,+,AluJb,SINE,Alu,3,309,-3,1012744,1013060 -4 + chr1 1055956 1055999 chr1,1055956,1055999,+,(CCCATC)n,Simple_repeat,Simple_repeat,1,44,0,1055956,1055999 +6 + chr1 1062717 1062795 chr1,1062717,1062795,-,MLT1B,LTR,ERVL-MaLR,-70,320,287,1062647,1063081 +6 - chr1 1143871 1144037 chr1,1143871,1144037,+,L1MB5,LINE,L1,6000,6171,-3,1137872,1144040 +6 + chr1 1169357 1169393 chr1,1169353,1169393,+,(ACCCCC)n,Simple_repeat,Simple_repeat,1,40,0,1169353,1169393 +1 + chr1 1170254 1170275 chr1,1170254,1170275,+,(CTC)n,Simple_repeat,Simple_repeat,1,22,0,1170254,1170275 +6 + chr1 1173056 1173396 chr1,1173026,1173396,-,LTR46,LTR,ERV1,-20,440,1,1173006,1173396 +5 - chr1 1174838 1175134 chr1,1174838,1175134,+,AluSx1,SINE,Alu,3,301,-11,1174836,1175145 -6 + chr1 1175645 1175756 chr1,1175645,1175756,-,MIR,SINE,MIR,-22,246,123,1175623,1175878 +6 - chr1 1249777 1250658 chr1,1249687,1250658,-,LTR13,LTR,ERVK,0,1007,1,1249687,1250658 +5 - chr1 1279068 1279090 chr1,1278792,1279090,-,MER4B-int,LTR,ERV1,-5793,965,698,1272999,1279787 -2 - chr1 1279193 1279393 chr1,1279193,1279400,-,MER4B-int,LTR,ERV1,-6035,723,534,1273158,1279933 -5 - chr1 1280311 1280420 chr1,1280182,1280482,+,AluYe5,SINE,Alu,1,301,-9,1280182,1280491 +5 + chr1 1317738 1317864 chr1,1317738,1317864,+,L1MEg,LINE,L1,1309,1433,-4651,1316430,1322515 -6 + chr1 1317864 1317899 chr1,1317864,1318169,-,AluY,SINE,Alu,-18,293,1,1317846,1318169 +2 - chr1 1318623 1318662 chr1,1318376,1318662,+,AluJb,SINE,Alu,2,297,-15,1318375,1318677 -4 + chr1 1400942 1400999 chr1,1400942,1400999,+,L3,LINE,CR1,3123,3182,-917,1397820,1401916 +6 + chr1 1409096 1409163 chr1,1409033,1409163,+,AluSp,SINE,Alu,167,294,-19,1408867,1409182 +1 + chr1 1409166 1409448 chr1,1409166,1409448,+,AluSx1,SINE,Alu,1,303,-9,1409166,1409457 +6 + chr1 1409452 1409688 chr1,1409452,1409688,-,AluJb,SINE,Alu,-19,293,21,1409433,1409708 -6 - chr1 1409763 1409806 chr1,1409763,1409806,-,MER74B,LTR,ERVL,-82,540,501,1409681,1410306 -6 - chr1 1409806 1410618 chr1,1409806,1410773,+,LTR5_Hs,LTR,ERVK,1,968,0,1409806,1410773 +5 + chr1 1422469 1422495 chr1,1422304,1422495,+,L2a,LINE,L2,3111,3324,-102,1419194,1422597 +2 + chr1 1422513 1422650 chr1,1422513,1422650,-,LTR75,LTR,ERVL,-294,268,122,1422219,1422771 -6 - chr1 1575374 1575512 chr1,1575374,1575512,-,L2,LINE,L2,-2075,1344,1184,1573299,1576695 -6 - chr1 1575524 1575713 chr1,1575524,1575713,-,MER65A,LTR,ERV1,0,445,233,1575524,1575945 -6 - chr1 1575713 1576011 chr1,1575713,1576011,+,AluY,SINE,Alu,1,298,-13,1575713,1576024 +6 + chr1 1576011 1576231 chr1,1576011,1576231,-,MER65A,LTR,ERV1,-213,232,6,1575798,1576236 -6 - chr1 1576236 1576556 chr1,1576236,1576556,-,MER65-int,LTR,ERV1,0,4871,4544,1576236,1581099 -6 - chr1 1576556 1576855 chr1,1576556,1576855,+,AluSc,SINE,Alu,2,300,-9,1576555,1576864 +6 + chr1 1576855 1576990 chr1,1576855,1576990,-,MER65-int,LTR,ERV1,-328,4543,4413,1576527,1581402 -6 - chr1 1613792 1614085 chr1,1613792,1614085,+,HAL1,LINE,L1,1763,2078,-429,1612030,1614514 -6 + chr1 1614165 1614629 chr1,1614165,1614629,+,MER65D,LTR,ERV1,1,473,0,1614165,1614629 -6 + chr1 1614734 1615044 chr1,1614734,1615044,+,AluSg,SINE,Alu,1,310,0,1614734,1615044 -6 + chr1 1615444 1615487 chr1,1615444,1615487,+,G-rich,Low_complexity,Low_complexity,1,44,0,1615444,1615487 -6 + chr1 1672095 1672364 chr1,1672095,1672364,+,AluJb,SINE,Alu,15,299,-13,1672081,1672377 +6 + chr1 1672511 1672623 chr1,1672511,1672623,-,L1MEg,LINE,L1,-5492,592,479,1667019,1673101 -6 - chr1 1672705 1672974 chr1,1672705,1672974,-,L1MEg,LINE,L1,-5783,301,6,1666922,1672979 -6 - chr1 1672973 1673088 chr1,1672973,1673088,-,L1MC5,LINE,L1,-1666,7638,7513,1671307,1680600 -6 - chr1 1673088 1673234 chr1,1673088,1673234,+,AluJb,SINE,Alu,2,146,-166,1673087,1673400 +6 + chr1 1673387 1673411 chr1,1673387,1673679,+,AluSg,SINE,Alu,1,290,-20,1673387,1673699 +5 + chr1 1708195 1708245 chr1,1708195,1708246,+,(TTCATC)n,Simple_repeat,Simple_repeat,1,58,0,1708195,1708246 -2 + chr1 1708833 1708872 chr1,1708833,1708872,+,(CTC)n,Simple_repeat,Simple_repeat,1,39,0,1708833,1708872 -6 + chr1 1708888 1708932 chr1,1708888,1708932,+,(CTC)n,Simple_repeat,Simple_repeat,1,45,0,1708888,1708932 -6 + chr1 1721630 1721711 chr1,1721630,1721714,+,L2,LINE,L2,579,659,-2760,1721052,1724474 -2 + chr1 1735204 1735342 chr1,1735144,1735342,+,AluSx1,SINE,Alu,80,277,-35,1735065,1735377 -4 + chr1 1735394 1735509 chr1,1735394,1735509,-,L1MEg,LINE,L1,-5970,114,6,1729424,1735514 +6 - chr1 1735508 1735624 chr1,1735508,1735624,-,L1MC5,LINE,L1,-1666,7638,7513,1733842,1743136 +6 - chr1 1735624 1735770 chr1,1735624,1735770,+,AluJb,SINE,Alu,2,146,-166,1735623,1735936 -6 + chr1 1735923 1736214 chr1,1735923,1736214,+,AluSg,SINE,Alu,1,291,-19,1735923,1736233 -6 + chr1 1736215 1736518 chr1,1736215,1736518,+,AluY,SINE,Alu,1,302,-9,1736215,1736527 -6 + chr1 1736518 1736831 chr1,1736518,1736831,+,AluSx1,SINE,Alu,1,312,0,1736518,1736831 -6 + chr1 1737307 1737502 chr1,1737307,1737502,+,AluJb,SINE,Alu,118,312,0,1737190,1737502 -6 + chr1 1891471 1891496 chr1,1891398,1891496,+,G-rich,Low_complexity,Low_complexity,1,99,0,1891398,1891496 +1 + chr1 1892469 1892658 chr1,1892469,1892852,-,L1MC4a,LINE,L1,-970,6912,6476,1891499,1899327 -5 - chr1 2013213 2013422 chr1,2013104,2013422,+,L1ME1,LINE,L1,5584,5900,-279,2007521,2013701 -5 + chr1 2013447 2013800 chr1,2013447,2013800,-,MLT1F2,LTR,ERVL-MaLR,-25,544,138,2013422,2013937 +6 - chr1 2013800 2014098 chr1,2013800,2014098,-,AluSz,SINE,Alu,-2,310,1,2013798,2014098 +6 - chr1 2014098 2014365 chr1,2014098,2014365,-,AluJb,SINE,Alu,-12,300,1,2014086,2014365 +6 - chr1 2014365 2014482 chr1,2014365,2014482,-,MLT1F2,LTR,ERVL-MaLR,-423,137,5,2013942,2014486 +6 - chr1 2141310 2141645 chr1,2141310,2141645,-,AluSz,SINE,Alu,0,312,1,2141310,2141645 +6 - chr1 2142732 2142776 chr1,2142732,2142776,-,L2a,LINE,L2,-30,3396,3353,2142702,2146128 +6 - chr1 2143016 2143328 chr1,2143016,2143328,-,AluY,SINE,Alu,0,311,1,2143016,2143328 +6 - chr1 2182201 2182225 chr1,2182201,2182225,+,(TTG)n,Simple_repeat,Simple_repeat,1,24,0,2182201,2182225 -6 + chr1 2182799 2182823 chr1,2182799,2182933,+,(AGTG)n,Simple_repeat,Simple_repeat,1,140,0,2182799,2182933 -2 + chr1 2183571 2183875 chr1,2183542,2183905,-,MLT1A1,LTR,ERVL-MaLR,-7,401,4,2183535,2183908 +1 - chr1 2220717 2220738 chr1,2220717,2221331,-,L1MC4,LINE,L1,-140,7902,7264,2220577,2228594 -5 - chr1 2363061 2363262 chr1,2362883,2363262,+,L1MEc,LINE,L1,1705,2097,-4303,2361179,2367565 -5 + chr1 2363280 2363310 chr1,2363280,2363310,+,(AAAG)n,Simple_repeat,Simple_repeat,1,31,0,2363280,2363310 -6 + chr1 2363413 2363474 chr1,2363413,2363474,+,L1MEc,LINE,L1,2120,2169,-4231,2361294,2367705 -6 + chr1 2363474 2363628 chr1,2363474,2363796,+,AluJo,SINE,Alu,1,310,-2,2363474,2363798 -1 + chr1 2549920 2550061 chr1,2549834,2550061,-,AluSx1,SINE,Alu,-86,226,1,2549748,2550061 +5 - chr1 2550283 2550387 chr1,2550267,2550387,-,L1ME2,LINE,L1,0,6180,6060,2550267,2556446 +5 - chr1 2550716 2550731 chr1,2550716,2550897,+,MLT1B,LTR,ERVL-MaLR,192,381,-9,2550525,2550906 -2 + chr1 2550992 2551364 chr1,2550899,2551364,-,L1ME2,LINE,L1,-144,6020,5534,2550755,2556897 +4 - chr1 2551903 2552043 chr1,2551903,2552043,-,L1MEc,LINE,L1,-6007,393,250,2545896,2552292 +6 - chr1 2552735 2552856 chr1,2552735,2552856,+,MIR,SINE,MIR,53,160,-102,2552683,2552958 -6 + chr1 2553557 2553610 chr1,2553557,2553610,+,(CCT)n,Simple_repeat,Simple_repeat,1,55,0,2553557,2553610 -6 + chr1 2555525 2555570 chr1,2555525,2555570,+,G-rich,Low_complexity,Low_complexity,1,46,0,2555525,2555570 -6 + chr1 2556548 2556573 chr1,2556548,2556573,+,(TTCTCT)n,Simple_repeat,Simple_repeat,1,25,0,2556548,2556573 -6 + chr1 2569620 2569778 chr1,2569620,2569778,+,L1ME1,LINE,L1,250,411,-5989,2569371,2575767 +6 + chr1 2581560 2581650 chr1,2581465,2581930,+,L1MEg,LINE,L1,636,1086,-4998,2580830,2586928 +1 + chr1 2583370 2583386 chr1,2583184,2583386,+,MLT1A0,LTR,ERVL-MaLR,130,330,-35,2583055,2583421 +2 + chr1 2584125 2584292 chr1,2583978,2584292,+,MLT1I,LTR,ERVL-MaLR,64,394,-17,2583915,2584309 +2 + chr1 2584458 2584533 chr1,2584458,2584709,+,MER34,LTR,ERV1,6,269,-273,2584453,2584982 +5 + chr1 2636567 2636620 chr1,2636567,2636665,+,LTR41C,LTR,ERVL,623,795,0,2635945,2636665 +5 + chr1 2812478 2812692 chr1,2812478,2812914,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,2812478,2812916 -1 + chr1 2814432 2814487 chr1,2813098,2814487,+,LTR12C,LTR,ERV1,2,1579,0,2813097,2814487 -5 + chr1 2814636 2814688 chr1,2814636,2814800,-,MLT1H-int,LTR,ERVL-MaLR,-178,1231,1059,2814458,2815858 +2 - chr1 3060485 3060644 chr1,3060485,3060644,+,MIRb,SINE,MIR,17,178,-90,3060469,3060734 -6 + chr1 3061433 3061463 chr1,3061433,3061463,+,G-rich,Low_complexity,Low_complexity,1,32,0,3061433,3061463 -6 + chr1 3063331 3063437 chr1,3063331,3063437,-,MIRc,SINE,MIR,-49,219,112,3063282,3063548 +6 - chr1 3207912 3208107 chr1,3207912,3208107,+,MIR1_Amn,SINE,MIR,25,229,-39,3207888,3208146 +6 + chr1 3208385 3208664 chr1,3208385,3208693,+,AluSg4,SINE,Alu,1,309,-1,3208385,3208694 +5 + chr1 3306657 3307347 chr1,3306657,3307347,-,L1MB7,LINE,L1,-1,6183,5485,3306656,3312831 +6 - chr1 3308289 3308410 chr1,3308289,3308410,+,MER81,DNA,hAT-Blackjack,3,111,-3,3308287,3308413 -6 + chr1 3309470 3309572 chr1,3309470,3309572,+,MIR,SINE,MIR,51,154,-54,3309420,3309626 -6 + chr1 3487246 3487568 chr1,3487180,3487568,+,L1PA14,LINE,L1,5774,6146,-10,3481407,3487578 +1 + chr1 3623417 3623556 chr1,3623417,3623573,+,LTR40c,LTR,ERVL,2,168,-297,3623416,3623870 -2 + chr1 3658938 3658964 chr1,3658895,3658964,-,MER34C2,LTR,ERV1,-512,73,5,3658383,3658968 +5 - chr1 3658938 3659000 chr1,3658931,3659000,-,MER34C2,LTR,ERV1,-512,73,5,3658419,3659004 +5 - chr1 3658967 3659040 chr1,3658967,3659040,-,MER34C2,LTR,ERV1,-512,73,1,3658455,3659040 +6 - chr1 3659040 3659073 chr1,3659040,3659073,-,MER34C2,LTR,ERV1,-519,36,4,3658521,3659076 +6 - chr1 3659159 3659430 chr1,3659159,3659675,-,MER31-int,LTR,ERV1,-202,4734,4217,3658957,3663891 +2 - chr1 3668625 3668708 chr1,3668603,3668708,+,L1MC5,LINE,L1,9059,9161,-143,3659545,3668851 -4 + chr1 3712338 3712376 chr1,3712338,3712376,+,(GCTCGTG)n,Simple_repeat,Simple_repeat,1,41,0,3712338,3712376 -6 + chr1 3737577 3737875 chr1,3737577,3737875,+,AluSg,SINE,Alu,1,298,-12,3737577,3737887 -1 + chr1 3741220 3741373 chr1,3741082,3741698,+,MER51A,LTR,ERV1,1,634,0,3741082,3741698 -3 + chr1 3742430 3742517 chr1,3742356,3742579,+,L2c,LINE,L2,3136,3385,-2,3739221,3742581 -3 + chr1 3913854 3914141 chr1,3913854,3914141,-,AluSz,SINE,Alu,-15,297,2,3913839,3914142 -6 - chr1 3914141 3914280 chr1,3914141,3914280,-,L2a,LINE,L2,-6,3420,3224,3914135,3917503 -6 - chr1 3915289 3915504 chr1,3915289,3915504,+,LTR33C,LTR,ERVL,398,624,-5,3914892,3915509 +5 + chr1 3915521 3915674 chr1,3915521,3915674,-,LTR85c,LTR,Gypsy?,-611,212,57,3914910,3915730 -6 - chr1 3916052 3916155 chr1,3916052,3916155,+,LTR79,LTR,ERVL,425,527,0,3915628,3916155 +6 + chr1 3916227 3916430 chr1,3916227,3916430,+,MIRc,SINE,MIR,19,239,-29,3916209,3916459 +6 + chr1 3916447 3916951 chr1,3916447,3916951,+,Kanga1a,DNA,TcMar-Tc2,4,521,-233,3916444,3917184 +6 + chr1 3916951 3917225 chr1,3916951,3917249,+,AluSz,SINE,Alu,1,306,-6,3916951,3917255 +5 + chr1 3940647 3940698 chr1,3940647,3940839,-,MIRb,SINE,MIR,-23,245,27,3940624,3940865 -4 - chr1 3947161 3947328 chr1,3947161,3947627,-,L1MA4,LINE,L1,-1,6299,5819,3947160,3953445 +2 - chr1 3948490 3948595 chr1,3948490,3948689,+,MIRb,SINE,MIR,25,258,-10,3948466,3948699 -2 + chr1 3949103 3949351 chr1,3949103,3949408,+,L1MC1,LINE,L1,5693,5977,-356,3943411,3949764 +5 + chr1 3952307 3952458 chr1,3952307,3952458,+,MLT1J2,LTR,ERVL-MaLR,293,444,0,3952015,3952458 +6 + chr1 3952642 3953030 chr1,3952642,3953030,-,MLT1J,LTR,ERVL-MaLR,-50,462,63,3952592,3953092 -6 - chr1 3953094 3953469 chr1,3953094,3953469,-,MLT1A,LTR,ERVL-MaLR,-11,363,9,3953083,3953477 -6 - chr1 3953624 3953861 chr1,3953624,3953861,-,LTR33B,LTR,ERVL,-12,491,257,3953612,3954117 -6 - chr1 3954045 3954117 chr1,3954045,3954117,-,UCON132b,DNA,hAT-Tip100,-32,116,30,3954013,3954146 -6 - chr1 3954149 3954243 chr1,3954149,3954243,-,L1PA11,LINE,L1,-1,6173,6080,3954148,3960322 -6 - chr1 3954491 3954567 chr1,3954491,3954567,+,L2b,LINE,L2,1850,1927,-1492,3952642,3956059 +6 + chr1 3954788 3954915 chr1,3954788,3954915,+,MLT1H2,LTR,ERVL-MaLR,57,154,-395,3954732,3955310 +6 + chr1 4412051 4412409 chr1,4411693,4412409,-,MER50,LTR,ERV1,-24,710,14,4411669,4412422 -1 - chr1 4412532 4412632 chr1,4412532,4412756,-,L1ME3G,LINE,L1,-2336,3810,3581,4410196,4416336 -4 - chr1 4423027 4423187 chr1,4423027,4423417,+,LTR16A1,LTR,ERVL,18,450,-6,4423010,4423423 +4 + chr1 4423348 4423417 chr1,4423027,4423417,+,LTR16A1,LTR,ERVL,18,450,-6,4423010,4423423 +2 + chr1 4423994 4424045 chr1,4423838,4424045,+,MER31B,LTR,ERV1,220,456,-10,4423619,4424055 +2 + chr1 4424055 4424353 chr1,4424055,4424353,+,MLT1C,LTR,ERVL-MaLR,166,463,-4,4423890,4424357 +6 + chr1 4424428 4424687 chr1,4424428,4424765,+,MER61A,LTR,ERV1,1,341,0,4424428,4424765 +5 + chr1 4571559 4571629 chr1,4571559,4571760,+,MER103C,DNA,hAT-Charlie,43,224,-73,4571517,4571833 +4 + chr1 4572470 4572592 chr1,4572462,4573208,-,L1MD3,LINE,L1,-33,6140,5295,4572429,4578502 -3 - chr1 4582284 4582574 chr1,4582284,4582642,-,MLT1N2,LTR,ERVL-MaLR,-177,385,2,4582107,4582643 -4 - chr1 5088251 5088373 chr1,5088095,5088402,+,AluSp,SINE,Alu,2,309,-4,5088094,5088406 -3 + chr1 5090580 5090602 chr1,5090473,5090602,+,Tigger15a,DNA,TcMar-Tigger,65,189,-526,5090409,5091128 -4 + chr1 5587368 5587412 chr1,5587031,5587412,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,5587031,5587412 -5 + chr1 5587412 5587575 chr1,5587412,5587800,+,LTR79,LTR,ERVL,164,526,-1,5587249,5587801 -2 + chr1 5668235 5668295 chr1,5668235,5668525,+,LTR41B,LTR,ERVL,431,758,0,5667805,5668525 -1 + chr1 6204852 6204964 chr1,6204852,6204964,-,L2b,LINE,L2,-15,3360,3241,6204837,6208204 +6 - chr1 6205241 6205324 chr1,6205241,6205324,-,MIR3,SINE,MIR,-84,124,36,6205157,6205359 +6 - chr1 6236268 6236336 chr1,6236268,6236561,+,AluSz,SINE,Alu,2,293,-19,6236267,6236580 +4 + chr1 6236966 6237076 chr1,6236784,6237076,-,AluY,SINE,Alu,-15,296,1,6236769,6237076 -2 - chr1 6237245 6237345 chr1,6237226,6237367,-,FLAM_C,SINE,Alu,-10,133,1,6237216,6237367 -3 - chr1 6238224 6238385 chr1,6238224,6238385,+,MIRc,SINE,MIR,19,182,-86,6238206,6238471 +6 + chr1 6238418 6238584 chr1,6238418,6238584,-,AluJo,SINE,Alu,-10,302,137,6238408,6238720 -6 - chr1 6443034 6443169 chr1,6442896,6443188,+,AluSq2,SINE,Alu,1,299,-14,6442896,6443202 -5 + chr1 6724786 6724850 chr1,6724786,6724888,+,MER130,DNA,DNA,894,981,-613,6723893,6725501 +4 + chr1 6725937 6726595 chr1,6725913,6726595,+,L2a,LINE,L2,2464,3180,-246,6723450,6726841 +2 + chr1 6726595 6726892 chr1,6726595,6726892,+,AluSz,SINE,Alu,1,297,-15,6726595,6726907 +6 + chr1 6726892 6727074 chr1,6726892,6727074,+,L2a,LINE,L2,3181,3340,-86,6723712,6727160 +6 + chr1 6727074 6727396 chr1,6727074,6727396,+,AluSx1,SINE,Alu,1,311,-1,6727074,6727397 +6 + chr1 6727396 6727408 chr1,6727396,6727492,+,L2a,LINE,L2,3341,3425,-1,6724056,6727493 +5 + chr1 6729948 6729993 chr1,6729948,6729993,+,(ATAA)n,Simple_repeat,Simple_repeat,1,46,0,6729948,6729993 +6 + chr1 6784675 6784720 chr1,6784675,6784720,+,(GCCGGC)n,Simple_repeat,Simple_repeat,1,47,0,6784675,6784720 -6 + chr1 7382651 7382709 chr1,7382651,7382709,-,MIRc,SINE,MIR,-202,66,8,7382449,7382716 +6 - chr1 7388183 7388194 chr1,7388047,7388194,+,MIRb,SINE,MIR,39,204,-64,7388009,7388258 -5 + chr1 7693124 7693429 chr1,7693071,7693429,-,THE1B,LTR,ERVL-MaLR,0,364,1,7693071,7693429 +5 - chr1 7693429 7694107 chr1,7693429,7694107,-,MER77B,LTR,ERVL,-6,694,2,7693423,7694108 +6 - chr1 7694681 7694719 chr1,7694681,7694719,+,(CTCC)n,Simple_repeat,Simple_repeat,1,39,0,7694681,7694719 -6 + chr1 7698303 7698402 chr1,7698179,7698402,-,MER30,DNA,hAT-Charlie,-3,227,1,7698176,7698402 +5 - chr1 7698419 7698569 chr1,7698419,7698569,-,MIR1_Amn,SINE,MIR,-83,147,2,7698336,7698570 +6 - chr1 7700704 7700852 chr1,7700470,7700852,-,MLT1I,LTR,ERVL-MaLR,-2,409,3,7700468,7700854 +5 - chr1 7700957 7700970 chr1,7700957,7701044,+,AluJb,SINE,Alu,210,296,-16,7700748,7701060 -1 + chr1 7776383 7776715 chr1,7776103,7776715,-,L1MB5,LINE,L1,-1577,4569,3937,7774526,7780651 -1 - chr1 7811489 7811604 chr1,7811416,7811806,-,MLT1A1,LTR,ERVL-MaLR,-2,406,1,7811414,7811806 +3 - chr1 8121700 8122011 chr1,8121700,8122011,+,AluJb,SINE,Alu,2,312,0,8121699,8122011 +6 + chr1 8122076 8122321 chr1,8122076,8122321,-,L2b,LINE,L2,-1,3374,3129,8122075,8125449 -6 - chr1 8122525 8122630 chr1,8122525,8122630,-,L1MC4,LINE,L1,-139,7903,7801,8122386,8130430 -6 - chr1 8122630 8122702 chr1,8122630,8123171,-,MER41A,LTR,ERV1,-4,550,1,8122626,8123171 -5 - chr1 8208672 8208695 chr1,8208599,8208695,-,MIR3,SINE,MIR,-8,200,106,8208591,8208800 -1 - chr1 8214625 8214678 chr1,8214622,8214739,-,L2c,LINE,L2,-249,3138,3027,8214373,8217765 -3 - chr1 8215096 8215180 chr1,8215096,8215180,+,L1PB1,LINE,L1,6063,6151,0,8209034,8215180 +6 + chr1 8218190 8218333 chr1,8218186,8218333,-,AluYc,SINE,Alu,-2,297,152,8218184,8218484 +5 - chr1 8424658 8424701 chr1,8424658,8424711,-,L2c,LINE,L2,-79,3308,3255,8424579,8427965 -4 - chr1 8434633 8434838 chr1,8434475,8435076,+,MLT1G3,LTR,ERVL-MaLR,1,595,0,8434475,8435076 +5 + chr1 8805860 8805939 chr1,8805841,8806151,-,AluSq2,SINE,Alu,-3,310,1,8805838,8806151 +5 - chr1 8875788 8875920 chr1,8875788,8875920,-,FLAM_C,SINE,Alu,-19,124,1,8875769,8875920 +5 - chr1 8877573 8877891 chr1,8877573,8877891,+,AluSp,SINE,Alu,1,298,-15,8877573,8877906 -6 + chr1 9191393 9191440 chr1,9191223,9191440,+,LTR26E,LTR,ERV1,397,614,-8,9190827,9191448 +2 + chr1 9191888 9191923 chr1,9191888,9191923,+,(AAAGAA)n,Simple_repeat,Simple_repeat,1,33,0,9191888,9191923 +6 + chr1 9501092 9501120 chr1,9500928,9501120,+,MER91B,DNA,hAT-Tip100,1,190,0,9500928,9501120 -5 + chr1 9501405 9501548 chr1,9501405,9501627,+,MIRb,SINE,MIR,9,253,-15,9501397,9501642 -2 + chr1 9503320 9503344 chr1,9503320,9503344,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,9503320,9503344 -6 + chr1 9653331 9653464 chr1,9653331,9653464,-,MIRb,SINE,MIR,-89,179,40,9653242,9653503 +6 - chr1 9653924 9654043 chr1,9653924,9654090,+,FRAM,SINE,Alu,1,166,-10,9653924,9654100 -2 + chr1 9672426 9672719 chr1,9672425,9672723,-,AluJo,SINE,Alu,-9,303,3,9672416,9672725 +5 - chr1 9680797 9681135 chr1,9680797,9681157,-,MLT1F1,LTR,ERVL-MaLR,-1,568,177,9680796,9681333 +2 - chr1 9949638 9949755 chr1,9949410,9949755,-,AluSz,SINE,Alu,-13,299,1,9949397,9949755 -2 - chr1 9983182 9983290 chr1,9983182,9983372,+,AluSx3,SINE,Alu,110,299,-12,9983073,9983384 +4 + chr1 9984283 9984346 chr1,9984050,9984346,-,AluSx1,SINE,Alu,-15,297,1,9984035,9984346 -2 - chr1 10430228 10430268 chr1,10430228,10430268,-,L2a,LINE,L2,-38,3388,3348,10430190,10433615 +6 - chr1 10458555 10458772 chr1,10458534,10458836,-,AluSx1,SINE,Alu,-8,304,1,10458526,10458836 -1 - chr1 10459090 10459153 chr1,10458856,10459153,-,AluSx3,SINE,Alu,-14,297,1,10458842,10459153 -2 - chr1 10639241 10639319 chr1,10639212,10639319,+,(GCG)n,Simple_repeat,Simple_repeat,1,109,0,10639212,10639319 +1 + chr1 10649859 10649891 chr1,10649859,10649891,+,(AGGG)n,Simple_repeat,Simple_repeat,1,32,0,10649859,10649891 +6 + chr1 10649960 10650019 chr1,10649960,10650019,+,G-rich,Low_complexity,Low_complexity,1,61,0,10649960,10650019 +6 + chr1 10650354 10650400 chr1,10650354,10650400,+,A-rich,Low_complexity,Low_complexity,1,48,0,10650354,10650400 +6 + chr1 10651304 10651354 chr1,10651304,10651354,+,(GGGCGG)n,Simple_repeat,Simple_repeat,1,48,0,10651304,10651354 +6 + chr1 10652354 10652459 chr1,10652354,10652459,+,L2b,LINE,L2,3284,3426,0,10649071,10652459 +6 + chr1 10653115 10653167 chr1,10653115,10653167,-,MIR1_Amn,SINE,MIR,-60,170,119,10653055,10653285 -6 - chr1 10653687 10653731 chr1,10653687,10653731,+,G-rich,Low_complexity,Low_complexity,1,46,0,10653687,10653731 +6 + chr1 11029659 11029920 chr1,11029634,11029920,-,AluSp,SINE,Alu,-6,307,1,11029628,11029920 -1 - chr1 11071284 11071991 chr1,11071284,11071991,+,L2a,LINE,L2,2480,3326,-100,11068805,11072091 +6 + chr1 11072364 11072580 chr1,11072364,11072580,-,MIRb,SINE,MIR,-23,245,8,11072341,11072587 -6 - chr1 11073016 11073095 chr1,11073016,11073095,+,L1ME3,LINE,L1,6084,6162,0,11066933,11073095 +6 + chr1 11101801 11101952 chr1,11101554,11101952,+,L2c,LINE,L2,1632,1996,-1423,11099923,11103375 +2 + chr1 11149270 11149366 chr1,11149264,11149366,+,MER21C,LTR,ERVL,141,246,-622,11149124,11149988 +2 + chr1 11149390 11149537 chr1,11149390,11149844,+,MER21C,LTR,ERVL,432,908,-30,11148959,11149874 +5 + chr1 11609531 11609920 chr1,11608568,11609920,+,LTR12C,LTR,ERV1,1,1579,0,11608568,11609920 +1 + chr1 11609920 11609955 chr1,11609920,11609955,+,MLT1I,LTR,ERVL-MaLR,372,405,-6,11609549,11609961 +6 + chr1 11611843 11611978 chr1,11611649,11612104,-,MLT1K,LTR,ERVL-MaLR,-6,589,18,11611643,11612121 -3 - chr1 11612891 11613043 chr1,11612891,11613043,-,MLT2D,LTR,ERVL,0,567,299,11612891,11613341 -6 - chr1 11613043 11613355 chr1,11613043,11613407,+,THE1B,LTR,ERVL-MaLR,1,364,0,11613043,11613407 +5 + chr1 11777105 11777221 chr1,11777105,11777221,-,MIR3,SINE,MIR,-73,157,48,11777032,11777268 +6 - chr1 11777368 11777663 chr1,11777368,11777663,+,AluSx,SINE,Alu,1,300,-12,11777368,11777675 -6 + chr1 11777906 11777984 chr1,11777906,11777984,+,MIR3,SINE,MIR,58,145,-63,11777849,11778047 -6 + chr1 11778142 11778284 chr1,11778142,11778315,+,AluSx,SINE,Alu,134,306,-6,11778009,11778321 -2 + chr1 11779319 11779532 chr1,11779319,11779532,+,MIR,SINE,MIR,5,245,-17,11779315,11779549 -6 + chr1 11779545 11779619 chr1,11779545,11779657,+,MIR,SINE,MIR,5,123,-139,11779541,11779796 -1 + chr1 12823036 12823092 chr1,12822965,12823092,-,MIRb,SINE,MIR,-15,253,122,12822950,12823213 +4 - chr1 13147337 13147393 chr1,13147266,13147393,-,MIRb,SINE,MIR,-15,253,122,13147251,13147514 +4 - chr1 13324105 13324162 chr1,13324105,13324232,+,MIRb,SINE,MIR,122,253,-15,13323984,13324247 +4 + chr1 13514445 13514544 chr1,13514445,13514580,+,MIRb,SINE,MIR,51,191,-77,13514395,13514657 +4 + chr1 13516170 13516220 chr1,13516109,13516220,+,MIRc,SINE,MIR,120,228,-40,13515990,13516260 +2 + chr1 14223054 14223118 chr1,14222946,14223218,-,LTR41B,LTR,ERVL,-38,720,441,14222908,14223658 +1 - chr1 14348966 14349100 chr1,14348966,14349100,-,L2b,LINE,L2,-1,3374,3242,14348965,14352341 +6 - chr1 14349360 14349378 chr1,14349360,14349663,+,MER102c,DNA,hAT-Charlie,71,331,0,14349290,14349663 -2 + chr1 15111815 15111896 chr1,15111675,15111896,-,MER58A,DNA,hAT-Charlie,-9,215,2,15111666,15111897 +5 - chr1 15112094 15112298 chr1,15112094,15112298,+,MIRb,SINE,MIR,26,249,-19,15112069,15112317 -6 + chr1 15112329 15112374 chr1,15112329,15112374,+,(TG)n,Simple_repeat,Simple_repeat,1,45,0,15112329,15112374 -6 + chr1 15112762 15112893 chr1,15112762,15112893,+,MER5A,DNA,hAT-Charlie,4,131,-58,15112759,15112951 -6 + chr1 15113211 15113472 chr1,15113211,15113472,+,MER106B,DNA,hAT-Charlie,893,1059,0,15112319,15113472 -6 + chr1 15113667 15113870 chr1,15113667,15113870,-,AluSx1,SINE,Alu,-18,294,84,15113649,15113953 +6 - chr1 15113875 15114060 chr1,15113875,15114060,-,MIRb,SINE,MIR,-76,192,7,15113799,15114066 +6 - chr1 15114299 15114387 chr1,15114299,15114387,-,MIR,SINE,MIR,-79,183,75,15114220,15114461 +6 - chr1 15114409 15114467 chr1,15114409,15114467,+,(CTT)n,Simple_repeat,Simple_repeat,1,59,0,15114409,15114467 -6 + chr1 15115680 15115850 chr1,15115680,15115850,+,MIR,SINE,MIR,47,231,-37,15115634,15115887 -6 + chr1 15118576 15118712 chr1,15118576,15118712,-,MER5A1,DNA,hAT-Charlie,-28,138,1,15118548,15118712 +6 - chr1 15120578 15120697 chr1,15120578,15120772,-,MIRb,SINE,MIR,-46,222,3,15120532,15120774 +2 - chr1 15124228 15124287 chr1,15124156,15124287,+,MIR,SINE,MIR,34,187,-21,15124123,15124308 -4 + chr1 15327751 15328063 chr1,15327751,15328063,+,AluSp,SINE,Alu,1,313,0,15327751,15328063 -6 + chr1 15328241 15328268 chr1,15328241,15328268,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,15328241,15328268 -6 + chr1 15334166 15334267 chr1,15334125,15334267,-,MIRb,SINE,MIR,-117,151,4,15334008,15334270 +5 - chr1 15334453 15334665 chr1,15334453,15334665,+,MIR,SINE,MIR,5,245,-17,15334449,15334682 -6 + chr1 15402979 15403028 chr1,15402843,15403028,-,MER58A,DNA,hAT-Charlie,-4,220,30,15402839,15403057 +5 - chr1 15403150 15403535 chr1,15403150,15403535,-,MER21A,LTR,ERVL,-28,903,538,15403122,15404072 +6 - chr1 15403535 15403839 chr1,15403535,15403839,+,AluSq2,SINE,Alu,1,302,-11,15403535,15403850 -6 + chr1 15403839 15404222 chr1,15403839,15404222,-,MER21A,LTR,ERVL,-394,537,130,15403445,15404351 +6 - chr1 15404236 15404295 chr1,15404236,15404295,-,MER21A,LTR,ERVL,-857,74,16,15403379,15404310 +6 - chr1 15404295 15404593 chr1,15404295,15404593,+,AluJo,SINE,Alu,1,302,-10,15404295,15404603 -6 + chr1 15404765 15404814 chr1,15404765,15404814,-,MamRep605,LTR?,LTR?,-619,230,179,15404146,15404992 +6 - chr1 15404814 15405118 chr1,15404814,15405118,+,AluJb,SINE,Alu,6,307,-5,15404809,15405123 -6 + chr1 15405118 15405212 chr1,15405118,15405212,-,MamRep605,LTR?,LTR?,-671,178,89,15404447,15405300 +6 - chr1 15405623 15405784 chr1,15405623,15405784,-,L2a,LINE,L2,0,3426,3263,15405623,15409046 +6 - chr1 15405939 15405971 chr1,15405939,15405971,+,(CCAGTGC)n,Simple_repeat,Simple_repeat,1,32,0,15405939,15405971 -6 + chr1 15406357 15406658 chr1,15406357,15406658,+,AluY,SINE,Alu,1,300,-11,15406357,15406669 -6 + chr1 15586331 15586625 chr1,15586331,15586625,+,AluY,SINE,Alu,1,296,-15,15586331,15586640 -6 + chr1 15586913 15586963 chr1,15586913,15586963,-,L2c,LINE,L2,-1,3386,3337,15586912,15590299 +6 - chr1 15587509 15587590 chr1,15587509,15587590,+,L2c,LINE,L2,3023,3099,-288,15584487,15587878 -6 + chr1 15587626 15587825 chr1,15587626,15587825,-,AluJo,SINE,Alu,-17,295,102,15587609,15587926 +6 - chr1 15587826 15587991 chr1,15587826,15587991,+,AluJb,SINE,Alu,5,169,-143,15587822,15588134 -6 + chr1 15587991 15588442 chr1,15587991,15588747,-,LTR12D,LTR,ERV1,-2,1252,559,15587989,15589305 +2 - chr1 15725718 15725872 chr1,15725718,15726054,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,15725718,15726054 +2 - chr1 15740051 15740222 chr1,15740008,15740278,-,MLT1B,LTR,ERVL-MaLR,-8,382,118,15740000,15740395 +5 - chr1 15835911 15835945 chr1,15835911,15835945,+,(GC)n,Simple_repeat,Simple_repeat,1,35,0,15835911,15835945 -6 + chr1 15836482 15836777 chr1,15836482,15836777,-,AluSx1,SINE,Alu,-13,299,2,15836469,15836778 +6 - chr1 15836795 15836906 chr1,15836795,15836907,-,AluJr,SINE,Alu,-199,113,1,15836596,15836907 +2 - chr1 16006527 16006671 chr1,16006527,16006843,-,L2a,LINE,L2,0,3426,3084,16006527,16009926 +1 - chr1 16161501 16161615 chr1,16161395,16161615,-,MIRb,SINE,MIR,-14,254,25,16161381,16161639 -2 - chr1 16161624 16161723 chr1,16161624,16161723,+,L2c,LINE,L2,3025,3136,-251,16158600,16161974 +6 + chr1 16161745 16161801 chr1,16161745,16161801,+,L2a,LINE,L2,3370,3425,-1,16158376,16161802 +6 + chr1 16161872 16161883 chr1,16161872,16161992,+,MIRb,SINE,MIR,146,262,0,16161727,16161992 +5 + chr1 16197855 16197941 chr1,16197855,16197941,+,MLT1L,LTR,ERVL-MaLR,527,610,0,16197329,16197941 +6 + chr1 16460948 16461118 chr1,16460902,16461118,+,AluJr,SINE,Alu,108,306,-6,16460795,16461124 +1 + chr1 16461408 16461701 chr1,16461408,16461701,+,AluSz,SINE,Alu,1,301,-11,16461408,16461712 +6 + chr1 16462222 16462753 chr1,16462222,16462753,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,16462222,16462753 +6 + chr1 16462878 16462988 chr1,16462878,16462988,-,MIR,SINE,MIR,0,262,155,16462878,16463142 -6 - chr1 16462988 16463286 chr1,16462988,16463286,-,AluSz,SINE,Alu,-12,300,1,16462976,16463286 -6 - chr1 16468311 16468481 chr1,16468311,16468515,-,L1M5,LINE,L1,-368,5796,5580,16467943,16474094 -5 - chr1 16514670 16514808 chr1,16514670,16514808,-,Charlie4a,DNA,hAT-Charlie,-4,504,362,16514666,16515169 -6 - chr1 16514976 16515004 chr1,16514976,16515004,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,16514976,16515004 +6 + chr1 16515321 16515754 chr1,16515321,16515867,+,MER41E,LTR,ERV1,3,595,0,16515319,16515867 +5 + chr1 16534083 16534209 chr1,16534083,16534220,-,U1,snRNA,snRNA,-14,151,5,16534069,16534224 +2 - chr1 16535278 16535350 chr1,16535278,16535350,-,tRNA-Glu-GAA,tRNA,tRNA,-3,72,1,16535275,16535350 +5 - chr1 16535843 16536004 chr1,16535843,16536004,+,L2,LINE,L2,2456,2617,-802,16533388,16536806 -6 + chr1 16536088 16536172 chr1,16536088,16536263,-,MER20,DNA,hAT-Charlie,-56,163,1,16536032,16536263 +1 - chr1 16618487 16618647 chr1,16618487,16618647,+,L1ME3Cz,LINE,L1,398,561,-436,16618090,16619083 -6 + chr1 16619308 16619456 chr1,16619308,16619456,-,MIRb,SINE,MIR,-72,196,41,16619236,16619496 +6 - chr1 16619625 16619800 chr1,16619625,16619800,-,MIRb,SINE,MIR,-10,258,50,16619615,16619849 +6 - chr1 16629670 16629961 chr1,16629656,16629961,-,AluSx1,SINE,Alu,-18,294,3,16629638,16629963 +5 - chr1 16629961 16630010 chr1,16629961,16630010,-,AluYj4,SINE,Alu,-177,134,88,16629784,16630097 +6 - chr1 16634544 16634559 chr1,16634479,16634797,+,AluSx,SINE,Alu,1,312,0,16634479,16634797 -1 + chr1 16705459 16705594 chr1,16705437,16705728,-,AluSq,SINE,Alu,-12,301,1,16705425,16705728 -5 - chr1 16851359 16851477 chr1,16851359,16851626,-,L1ME3Cz,LINE,L1,-489,508,235,16850870,16851860 +2 - chr1 16851574 16851626 chr1,16851359,16851626,-,L1ME3Cz,LINE,L1,-489,508,235,16850870,16851860 +4 - chr1 16852075 16852154 chr1,16851953,16852154,-,HAL1,LINE,L1,-155,2352,2105,16851798,16854258 +4 - chr1 16871669 16871844 chr1,16871669,16871844,+,MER20,DNA,hAT-Charlie,1,163,-56,16871669,16871900 +1 + chr1 16871928 16872089 chr1,16871928,16872089,-,L2,LINE,L2,-802,2617,2456,16871126,16874544 -6 - chr1 16872582 16872654 chr1,16872582,16872654,+,tRNA-Glu-GAA,tRNA,tRNA,1,72,-3,16872582,16872657 +5 + chr1 16873709 16873848 chr1,16873709,16873848,+,U1,snRNA,snRNA,3,151,-14,16873707,16873862 +6 + chr1 16904344 16904443 chr1,16904344,16904443,+,LTR56,LTR,ERV1,9,119,-326,16904336,16904769 -6 + chr1 16904652 16904767 chr1,16904652,16904767,+,Charlie4a,DNA,hAT-Charlie,385,500,-8,16904268,16904775 -6 + chr1 17004643 17004683 chr1,17004590,17004683,-,MIR3,SINE,MIR,-22,186,93,17004568,17004775 -2 - chr1 17189783 17189857 chr1,17189726,17189857,-,L2c,LINE,L2,-38,3349,3230,17189688,17193086 -1 - chr1 17193977 17194092 chr1,17193977,17194092,+,MIR3,SINE,MIR,24,139,-69,17193954,17194161 +6 + chr1 17194101 17194199 chr1,17194101,17194199,+,MIRc,SINE,MIR,68,164,-98,17194034,17194297 +6 + chr1 17194973 17195143 chr1,17194973,17195143,-,L2b,LINE,L2,-82,3293,3133,17194891,17198275 -6 - chr1 17195456 17195497 chr1,17195456,17195497,+,MIR3,SINE,MIR,81,121,-87,17195376,17195584 +6 + chr1 17196159 17196419 chr1,17196159,17196419,+,MIRb,SINE,MIR,5,268,0,17196155,17196419 +6 + chr1 17196475 17196618 chr1,17196475,17196618,+,L2c,LINE,L2,3242,3387,0,17193234,17196618 +6 + chr1 17197073 17197347 chr1,17197073,17197347,+,L4_A_Mam,LINE,RTE-X,4180,4466,-524,17192894,17197871 +6 + chr1 17197323 17197545 chr1,17197323,17197545,+,L4_A_Mam,LINE,RTE-X,4581,4790,-200,17192743,17197745 +6 + chr1 17718560 17718634 chr1,17718451,17718634,-,MIR,SINE,MIR,-19,243,52,17718432,17718685 -2 - chr1 17718691 17718720 chr1,17718691,17718771,-,L2b,LINE,L2,-192,3183,3106,17718499,17721876 -4 - chr1 17721680 17721768 chr1,17721505,17721915,-,MLT1K,LTR,ERVL-MaLR,-17,578,167,17721488,17722081 -3 - chr1 17749677 17749978 chr1,17749497,17750026,+,MLT1F,LTR,ERVL-MaLR,1,546,-2,17749497,17750028 +5 + chr1 18065657 18065847 chr1,18065454,18065957,+,MLT1D,LTR,ERVL-MaLR,1,502,-3,18065454,18065960 +1 + chr1 18068206 18068268 chr1,18068206,18068268,+,GA-rich,Low_complexity,Low_complexity,1,62,0,18068206,18068268 +6 + chr1 18072220 18072326 chr1,18072122,18072326,+,L2c,LINE,L2,3026,3237,-150,18069097,18072476 +2 + chr1 18072487 18073000 chr1,18072487,18073000,+,MLT1H,LTR,ERVL-MaLR,1,549,0,18072487,18073000 +6 + chr1 18073626 18073647 chr1,18073626,18073647,+,(TCTT)n,Simple_repeat,Simple_repeat,1,21,0,18073626,18073647 +6 + chr1 18073647 18073674 chr1,18073647,18073674,+,(GA)n,Simple_repeat,Simple_repeat,1,27,0,18073647,18073674 +6 + chr1 18074110 18074412 chr1,18074110,18074670,+,L1MB2,LINE,L1,5609,6169,-2,18068502,18074672 +5 + chr1 18111699 18111780 chr1,18111699,18111780,-,MIRb,SINE,MIR,-79,189,103,18111620,18111882 -6 - chr1 18112014 18112045 chr1,18112014,18112045,+,GA-rich,Low_complexity,Low_complexity,1,31,0,18112014,18112045 +6 + chr1 18112244 18112370 chr1,18112244,18112370,-,L2b,LINE,L2,0,3375,3246,18112244,18115615 -6 - chr1 18112423 18112649 chr1,18112423,18112649,-,MIRb,SINE,MIR,-34,234,5,18112389,18112653 -6 - chr1 18113048 18113119 chr1,18113048,18113119,-,MIRb,SINE,MIR,-184,84,19,18112864,18113137 -6 - chr1 18113586 18113623 chr1,18113586,18113623,+,(CACCCC)n,Simple_repeat,Simple_repeat,1,38,0,18113586,18113623 +6 + chr1 18113793 18113871 chr1,18113793,18113871,+,MIRb,SINE,MIR,152,227,-41,18113642,18113912 +6 + chr1 18114281 18114383 chr1,18114281,18114383,+,L2b,LINE,L2,3249,3363,-12,18111033,18114395 +6 + chr1 18114616 18114843 chr1,18114616,18114843,-,MIRc,SINE,MIR,-8,260,5,18114608,18114847 -6 - chr1 18114921 18115059 chr1,18114921,18115059,-,MIRb,SINE,MIR,-20,248,86,18114901,18115144 -6 - chr1 18115126 18115161 chr1,18115126,18115161,+,(CTC)n,Simple_repeat,Simple_repeat,1,35,0,18115126,18115161 +6 + chr1 18115408 18115489 chr1,18115408,18115489,+,L2b,LINE,L2,3298,3375,0,18112111,18115489 +6 + chr1 18115751 18115842 chr1,18115751,18115842,+,GA-rich,Low_complexity,Low_complexity,1,91,0,18115751,18115842 +6 + chr1 18115842 18115861 chr1,18115842,18115903,+,(AAGA)n,Simple_repeat,Simple_repeat,1,61,0,18115842,18115903 +5 + chr1 18386005 18386220 chr1,18386005,18386249,+,MIR,SINE,MIR,3,261,-1,18386003,18386250 +4 + chr1 18388416 18388428 chr1,18388120,18388428,+,MLT1A0,LTR,ERVL-MaLR,31,357,-8,18388090,18388436 +2 + chr1 19073274 19073345 chr1,19073274,19073345,-,MIRb,SINE,MIR,-67,201,125,19073207,19073469 +6 - chr1 19073314 19073351 chr1,19073314,19073351,-,MIR1_Amn,SINE,MIR,-76,154,119,19073238,19073469 +6 - chr1 19075105 19075223 chr1,19075105,19075223,-,Tigger19b,DNA,TcMar-Tigger,-94,456,334,19075011,19075556 +6 - chr1 19075325 19075355 chr1,19075325,19075355,+,(CCT)n,Simple_repeat,Simple_repeat,1,32,0,19075325,19075355 -6 + chr1 19819291 19819484 chr1,19819291,19819484,-,Charlie16a,DNA,hAT-Charlie,-44,298,105,19819247,19819588 -6 - chr1 20154338 20154463 chr1,20154321,20156816,+,HERVE-int,LTR,ERV1,1,2512,-5301,20154321,20162117 +1 + chr1 20157692 20159247 chr1,20156816,20160102,+,HERVE-int,LTR,ERV1,2686,6005,-1808,20154131,20161910 +1 + chr1 20159612 20160102 chr1,20156816,20160102,+,HERVE-int,LTR,ERV1,2686,6005,-1808,20154131,20161910 +1 + chr1 20160105 20160163 chr1,20160105,20160163,+,Harlequin-int,LTR,ERV1,5468,5528,-1368,20154638,20161531 +6 + chr1 20160161 20160228 chr1,20160161,20160228,+,Harlequin-int,LTR,ERV1,6829,6895,-1,20153333,20160229 +6 + chr1 20160391 20160513 chr1,20160391,20160513,+,LTR2C,LTR,ERV1,315,435,-66,20160077,20160579 +6 + chr1 20160505 20160568 chr1,20160505,20160610,+,LTR2C,LTR,ERV1,396,501,0,20160110,20160610 +5 + chr1 20184608 20184624 chr1,20184608,20184871,-,L2c,LINE,L2,-1763,1656,1399,20182845,20186269 +2 - chr1 20244296 20244405 chr1,20244292,20244405,-,MER81,DNA,hAT-Blackjack,0,114,1,20244292,20244405 -2 - chr1 20244405 20244655 chr1,20244405,20244729,+,MLT1H,LTR,ERVL-MaLR,246,549,0,20244160,20244729 +5 + chr1 20323103 20323176 chr1,20323014,20323176,-,MIRb,SINE,MIR,-72,196,29,20322942,20323204 +4 - chr1 20360586 20360729 chr1,20360586,20360729,-,Helitron2Na_Mam,RC?,Helitron?,-98,226,87,20360488,20360815 +6 - chr1 20361095 20361152 chr1,20361095,20361152,+,(TG)n,Simple_repeat,Simple_repeat,1,57,0,20361095,20361152 -6 + chr1 20377392 20377509 chr1,20377392,20377840,-,L2b,LINE,L2,0,3375,2880,20377392,20380719 +2 - chr1 20378311 20378432 chr1,20378151,20378451,+,AluJo,SINE,Alu,1,298,-14,20378151,20378465 -3 + chr1 20378973 20379026 chr1,20378889,20379255,-,THE1B,LTR,ERVL-MaLR,0,364,1,20378889,20379255 +3 - chr1 20398483 20398498 chr1,20398358,20398498,-,MIRb,SINE,MIR,-27,241,86,20398331,20398583 +4 - chr1 20398647 20398787 chr1,20398647,20399079,-,L2c,LINE,L2,0,3387,2946,20398647,20402024 +5 - chr1 20399480 20399549 chr1,20399412,20399633,+,MIRb,SINE,MIR,15,261,-1,20399398,20399634 -3 + chr1 20400935 20400987 chr1,20400889,20401117,+,MIRb,SINE,MIR,40,265,-3,20400850,20401120 -3 + chr1 20412304 20412428 chr1,20412276,20412428,-,L1PA16,LINE,L1,0,6166,6018,20412276,20418445 +5 - chr1 20412428 20412482 chr1,20412428,20412581,+,Charlie15a,DNA,hAT-Charlie,2,149,-75,20412427,20412656 -2 + chr1 20412568 20412581 chr1,20412428,20412581,+,Charlie15a,DNA,hAT-Charlie,2,149,-75,20412427,20412656 -4 + chr1 20412605 20412654 chr1,20412605,20413040,-,L2a,LINE,L2,0,3426,2973,20412605,20416012 +2 - chr1 20413144 20413253 chr1,20413141,20413278,-,MIR3,SINE,MIR,-48,160,18,20413093,20413295 +1 - chr1 20431220 20431234 chr1,20431220,20431299,+,UCON21,DNA?,DNA?,115,193,-137,20431106,20431436 -1 + chr1 20642657 20642667 chr1,20642210,20642667,-,LTR45C,LTR,ERV1,0,539,59,20642210,20642725 +5 - chr1 20642667 20642955 chr1,20642667,20642955,-,AluJb,SINE,Alu,-13,299,12,20642654,20642966 +6 - chr1 20642955 20642988 chr1,20642955,20642988,-,LTR45C,LTR,ERV1,-481,58,27,20642474,20643014 +6 - chr1 20643038 20643118 chr1,20643038,20643270,-,MLT1M,LTR,ERVL-MaLR,-269,403,121,20642769,20643390 +2 - chr1 20649482 20649786 chr1,20649482,20649786,+,AluSz6,SINE,Alu,1,304,-8,20649482,20649794 -6 + chr1 20651801 20652124 chr1,20651801,20652124,-,AluY,SINE,Alu,0,311,1,20651801,20652124 +6 - chr1 20743100 20743133 chr1,20743100,20743133,+,(T)n,Simple_repeat,Simple_repeat,1,33,0,20743100,20743133 +6 + chr1 20743381 20743564 chr1,20743381,20743690,+,AluSc8,SINE,Alu,1,311,0,20743381,20743690 +4 + chr1 20743837 20743962 chr1,20743785,20744071,+,AluSx,SINE,Alu,1,289,-23,20743785,20744094 +5 + chr1 20743967 20744071 chr1,20743785,20744071,+,AluSx,SINE,Alu,1,289,-23,20743785,20744094 +5 + chr1 20744073 20744102 chr1,20744073,20744102,+,(ACA)n,Simple_repeat,Simple_repeat,1,31,0,20744073,20744102 +5 + chr1 21266521 21266656 chr1,21266521,21266656,-,MIRc,SINE,MIR,-80,182,42,21266441,21266697 -6 - chr1 21266940 21267251 chr1,21266940,21267256,+,MLT1A1,LTR,ERVL-MaLR,1,367,-41,21266940,21267297 +5 + chr1 21293941 21294103 chr1,21293941,21294103,-,MIRb,SINE,MIR,-93,175,5,21293848,21294107 -6 - chr1 21294110 21294185 chr1,21294110,21294185,-,MIRc,SINE,MIR,-169,99,22,21293941,21294206 -6 - chr1 21298027 21298139 chr1,21297828,21298139,-,AluJo,SINE,Alu,-3,309,1,21297825,21298139 -2 - chr1 21298409 21298581 chr1,21298409,21298581,+,MIR,SINE,MIR,80,240,-22,21298330,21298603 +6 + chr1 21298670 21298774 chr1,21298670,21298774,-,MIRc,SINE,MIR,-133,135,34,21298537,21298807 -6 - chr1 21298954 21298988 chr1,21298954,21298988,+,(TGCTCC)n,Simple_repeat,Simple_repeat,1,34,0,21298954,21298988 +6 + chr1 21299008 21299299 chr1,21299008,21299299,-,hAT-N1_Mam,DNA,hAT-Tip100?,-34,306,2,21298974,21299300 -6 - chr1 21299321 21299450 chr1,21299321,21299450,-,MIRb,SINE,MIR,-70,198,63,21299251,21299512 -6 - chr1 21299478 21299583 chr1,21299478,21299583,+,MIR3,SINE,MIR,16,118,-90,21299463,21299673 +6 + chr1 21299662 21299774 chr1,21299662,21299786,+,MIR,SINE,MIR,89,225,-37,21299574,21299823 +5 + chr1 21416536 21416619 chr1,21416536,21416740,+,HAL1,LINE,L1,2102,2319,-188,21414435,21416928 +4 + chr1 21417068 21417121 chr1,21417068,21417335,+,L1ME3Cz,LINE,L1,235,508,-489,21416834,21417824 +4 + chr1 21417218 21417335 chr1,21417068,21417335,+,L1ME3Cz,LINE,L1,235,508,-489,21416834,21417824 +2 + chr1 21417430 21417492 chr1,21417430,21417616,-,MIRb,SINE,MIR,-18,250,40,21417412,21417655 -5 - chr1 21586472 21586578 chr1,21586352,21586578,-,L4_C_Mam,LINE,RTE-X,-2262,2876,2657,21584090,21589234 -1 - chr1 21586709 21586945 chr1,21586709,21586945,-,MIR,SINE,MIR,-11,251,14,21586698,21586958 -6 - chr1 21591160 21591185 chr1,21591160,21591185,+,(TAA)n,Simple_repeat,Simple_repeat,1,25,0,21591160,21591185 +6 + chr1 22024093 22024190 chr1,22024093,22024190,-,MIR3,SINE,MIR,-8,200,106,22024085,22024295 +6 - chr1 22024806 22024905 chr1,22024621,22024905,-,AluSx1,SINE,Alu,-27,285,2,22024594,22024906 +4 - chr1 22025237 22025366 chr1,22025237,22025366,-,MIRb,SINE,MIR,-28,180,60,22025209,22025425 -6 - chr1 22027470 22027534 chr1,22027470,22027589,-,L1ME3G,LINE,L1,-293,599,464,22027177,22028052 -4 - chr1 22031027 22031050 chr1,22031027,22031050,+,(T)n,Simple_repeat,Simple_repeat,1,23,0,22031027,22031050 +6 + chr1 22059197 22059289 chr1,22059128,22059289,-,AluSp,SINE,Alu,-16,297,138,22059112,22059426 -1 - chr1 22059546 22059686 chr1,22059546,22059843,-,AluSx,SINE,Alu,-11,301,1,22059535,22059843 -4 - chr1 22063998 22064019 chr1,22063727,22064019,-,AluSz6,SINE,Alu,-20,292,1,22063707,22064019 -2 - chr1 22064189 22064199 chr1,22064189,22064211,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,22064189,22064211 +5 + chr1 22101236 22101351 chr1,22101236,22101351,+,MIR3,SINE,MIR,20,145,-63,22101217,22101414 +6 + chr1 22364630 22364689 chr1,22364607,22364689,+,L1MC,LINE,L1,5719,5799,-2083,22358889,22366772 -5 + chr1 22364740 22364815 chr1,22364740,22364815,-,MIRb,SINE,MIR,-21,247,182,22364719,22364996 +6 - chr1 22364983 22365128 chr1,22364983,22365128,-,MIR,SINE,MIR,-91,171,3,22364892,22365130 +6 - chr1 22365132 22365366 chr1,22365132,22365366,+,L1ME4a,LINE,L1,5848,6104,-20,22359285,22365386 -6 + chr1 22365640 22366009 chr1,22365640,22366009,+,THE1C,LTR,ERVL-MaLR,1,375,0,22365640,22366009 -6 + chr1 22836793 22836849 chr1,22836793,22836913,-,L2b,LINE,L2,-5,3370,3241,22836788,22840153 +1 - chr1 22916944 22917030 chr1,22916944,22917030,+,MamRep38,DNA,hAT,1,92,-203,22916944,22917233 +6 + chr1 22917502 22917591 chr1,22917502,22917591,+,MIR3,SINE,MIR,63,162,-46,22917440,22917637 +6 + chr1 22917621 22917784 chr1,22917621,22917784,-,MIRc,SINE,MIR,-91,177,10,22917530,22917793 -6 - chr1 22918837 22918944 chr1,22918837,22918944,-,MIRb,SINE,MIR,-73,195,80,22918764,22919023 -6 - chr1 22918979 22919138 chr1,22918979,22919138,+,MER5A,DNA,hAT-Charlie,7,160,-29,22918973,22919167 +6 + chr1 22919687 22919723 chr1,22919687,22919723,+,(GAGGGAG)n,Simple_repeat,Simple_repeat,1,39,0,22919687,22919723 +6 + chr1 22919972 22920011 chr1,22919972,22920011,+,A-rich,Low_complexity,Low_complexity,1,39,0,22919972,22920011 +6 + chr1 22920784 22921015 chr1,22920784,22921015,-,MIRb,SINE,MIR,-1,267,2,22920783,22921016 -6 - chr1 23015772 23015850 chr1,23015482,23016007,+,L1MB2,LINE,L1,5625,6168,-3,23009858,23016010 -1 + chr1 23281912 23282107 chr1,23281912,23282107,+,MIR,SINE,MIR,18,232,-30,23281895,23282137 -6 + chr1 23282247 23282328 chr1,23282247,23282328,+,L2c,LINE,L2,3266,3346,-41,23278982,23282369 -6 + chr1 23284355 23284528 chr1,23284355,23284528,-,FAM,SINE,Alu,-2,183,1,23284353,23284528 +5 - chr1 23284785 23284827 chr1,23284785,23284827,+,A-rich,Low_complexity,Low_complexity,1,43,0,23284785,23284827 -6 + chr1 23284987 23285157 chr1,23284987,23285157,+,AluSx3,SINE,Alu,133,306,-5,23284855,23285162 -6 + chr1 23285681 23285778 chr1,23285681,23285778,+,Tigger19b,DNA,TcMar-Tigger,360,464,-86,23285322,23285864 -6 + chr1 23370253 23370337 chr1,23370253,23370337,+,HY4,scRNA,scRNA,1,84,-9,23370253,23370346 +6 + chr1 23370396 23370584 chr1,23370396,23370584,+,MIRb,SINE,MIR,4,226,-42,23370393,23370626 +6 + chr1 23371594 23371839 chr1,23371594,23371939,-,MamRep4096,DNA,hAT-Tip100,-57,369,11,23371537,23371949 -5 - chr1 23378503 23378563 chr1,23378503,23378563,+,MER5A1,DNA,hAT-Charlie,1,74,-92,23378503,23378655 -6 + chr1 23378563 23378872 chr1,23378563,23378872,+,AluJo,SINE,Alu,2,311,-1,23378562,23378873 -6 + chr1 23378872 23378982 chr1,23378872,23378982,+,MER5A1,DNA,hAT-Charlie,75,163,-3,23378798,23378985 -6 + chr1 23549139 23549267 chr1,23549109,23549267,+,Charlie16a,DNA,hAT-Charlie,61,207,-135,23549049,23549402 -5 + chr1 23549269 23549443 chr1,23549269,23549449,-,MIR,SINE,MIR,0,262,59,23549269,23549507 +2 - chr1 23771769 23771883 chr1,23771769,23772065,+,AluJb,SINE,Alu,2,297,-15,23771768,23772080 -2 + chr1 23772399 23772426 chr1,23772399,23772478,-,Tigger5b,DNA,TcMar-Tigger,-393,79,1,23772006,23772478 +2 - chr1 23907112 23907181 chr1,23907112,23907438,+,AluSx,SINE,Alu,1,312,0,23907112,23907438 +4 + chr1 23907747 23907791 chr1,23907480,23907791,-,AluSz,SINE,Alu,-2,310,2,23907478,23907792 -2 - chr1 23907791 23907885 chr1,23907791,23907978,-,Charlie21a,DNA,hAT-Charlie,-797,416,203,23906994,23908180 -5 - chr1 24040835 24040942 chr1,24040678,24040964,-,AluJr4,SINE,Alu,-21,291,1,24040657,24040964 -1 - chr1 24042277 24042345 chr1,24042222,24042780,+,LTR80B,LTR,ERVL,1,562,-22,24042222,24042802 +3 + chr1 24064188 24064273 chr1,24064188,24064362,+,MIR3,SINE,MIR,6,200,-8,24064183,24064370 +4 + chr1 24081750 24081812 chr1,24081558,24081812,-,AluJb,SINE,Alu,-8,304,58,24081550,24081869 -2 - chr1 24083292 24083565 chr1,24083292,24083611,+,MLT2A2,LTR,ERVL,230,561,0,24083063,24083611 +5 + chr1 24200240 24200391 chr1,24200110,24200471,+,THE1B,LTR,ERVL-MaLR,1,364,0,24200110,24200471 +1 + chr1 24210880 24210980 chr1,24210880,24210980,+,MIR3,SINE,MIR,86,185,-23,24210795,24211003 +6 + chr1 24211275 24211470 chr1,24211275,24211470,-,MIR,SINE,MIR,0,262,54,24211275,24211523 -6 - chr1 24211470 24211693 chr1,24211470,24211748,+,MER33,DNA,hAT-Charlie,1,289,-35,24211470,24211783 +5 + chr1 24308178 24308232 chr1,24308111,24308232,+,MIR3,SINE,MIR,10,134,-128,24308102,24308360 -4 + chr1 24310691 24310817 chr1,24310691,24310924,+,MIRb,SINE,MIR,5,267,-1,24310687,24310925 -2 + chr1 24538817 24538944 chr1,24538817,24538944,+,FLAM_A,SINE,Alu,1,127,-15,24538817,24538959 -6 + chr1 24539027 24539095 chr1,24539027,24539095,-,MIR3,SINE,MIR,-22,186,119,24539005,24539213 +6 - chr1 24551891 24551983 chr1,24551891,24551983,-,MIR3,SINE,MIR,-24,184,90,24551867,24552072 +6 - chr1 24961457 24961588 chr1,24961457,24961588,-,MIRc,SINE,MIR,-40,168,47,24961417,24961634 -6 - chr1 24961591 24961715 chr1,24961591,24961715,-,MER5A,DNA,hAT-Charlie,0,178,71,24961591,24961785 -6 - chr1 24962047 24962060 chr1,24961959,24962060,+,Charlie4a,DNA,hAT-Charlie,13,110,-398,24961947,24962458 +2 + chr1 24962071 24962241 chr1,24962071,24962391,+,Charlie4a,DNA,hAT-Charlie,163,475,-33,24961909,24962424 +4 + chr1 24968423 24968584 chr1,24968362,24968584,-,Tigger13a,DNA,TcMar-Tigger,-263,508,261,24968099,24968844 +5 - chr1 24968584 24969076 chr1,24968584,24969076,-,LTR33A_,LTR,ERVL,-3,528,1,24968581,24969076 +6 - chr1 24969076 24969226 chr1,24969076,24969226,-,Tigger13a,DNA,TcMar-Tigger,-511,260,104,24968565,24969329 +6 - chr1 24969940 24970038 chr1,24969940,24970038,-,MIRb,SINE,MIR,-140,128,23,24969800,24970060 +6 - chr1 24970561 24970676 chr1,24970561,24970676,-,MIRc,SINE,MIR,-93,175,48,24970468,24970723 +6 - chr1 24970753 24970865 chr1,24970753,24970922,+,MIRb,SINE,MIR,24,197,-71,24970730,24970993 -1 + chr1 25043707 25043836 chr1,25043523,25043900,-,MLT1D,LTR,ERVL-MaLR,-3,502,85,25043520,25043984 +5 - chr1 25112947 25113031 chr1,25112947,25113031,+,AluSz,SINE,Alu,1,84,-228,25112947,25113259 -6 + chr1 25208139 25208209 chr1,25208028,25208209,+,MLT1L,LTR,ERVL-MaLR,405,608,-2,25207624,25208211 +1 + chr1 25208534 25208569 chr1,25208518,25208569,-,SVA_B,Retroposon,SVA,0,1383,1333,25208518,25209901 -2 - chr1 25208552 25208749 chr1,25208552,25208749,-,Helitron3Na_Mam,RC,Helitron,-15,471,275,25208537,25209023 -6 - chr1 25208755 25208841 chr1,25208755,25208841,+,L2a,LINE,L2,2974,3058,-361,25205782,25209202 +6 + chr1 25208826 25208869 chr1,25208826,25209029,+,L2a,LINE,L2,3217,3416,-10,25205610,25209039 +5 + chr1 25590169 25590184 chr1,25590117,25590184,+,MLT2B2,LTR,ERVL,461,514,-1,25589657,25590185 +2 + chr1 25644544 25644821 chr1,25644518,25644821,-,AluJb,SINE,Alu,0,312,1,25644518,25644821 +5 - chr1 25817562 25817710 chr1,25817551,25817710,-,MIRb,SINE,MIR,-59,209,33,25817492,25817742 +4 - chr1 25818491 25818747 chr1,25818458,25818747,-,LTR16A1,LTR,ERVL,-17,439,135,25818441,25818881 +5 - chr1 25818965 25819133 chr1,25818965,25819133,-,MER45A,DNA,hAT-Tip100,0,178,1,25818965,25819133 +6 - chr1 25819387 25819430 chr1,25819387,25819430,+,(GT)n,Simple_repeat,Simple_repeat,1,43,0,25819387,25819430 -6 + chr1 25820183 25820280 chr1,25820183,25820280,-,MIR1_Amn,SINE,MIR,-94,136,29,25820089,25820308 +6 - chr1 26170106 26170146 chr1,26170106,26170146,+,(CGACCC)n,Simple_repeat,Simple_repeat,1,41,0,26170106,26170146 -6 + chr1 26462756 26462870 chr1,26462756,26463276,-,L2a,LINE,L2,-1,3425,2656,26462755,26465931 +5 - chr1 26463376 26463433 chr1,26463300,26463507,+,L1MC5a,LINE,L1,934,1141,-1636,26462367,26465143 -3 + chr1 26467048 26467273 chr1,26466983,26467273,+,L2c,LINE,L2,3033,3337,-50,26463951,26467323 -4 + chr1 26876212 26876310 chr1,26876212,26876517,-,AluSq2,SINE,Alu,-10,303,1,26876202,26876517 -4 - chr1 26878216 26878245 chr1,26878216,26878292,-,MER113,DNA,hAT-Charlie,-34,487,411,26878182,26878702 -5 - chr1 27229106 27229225 chr1,27228928,27229225,-,AluJb,SINE,Alu,-24,288,1,27228904,27229225 +5 - chr1 27233484 27233602 chr1,27233484,27233639,+,MIR,SINE,MIR,13,169,-93,27233472,27233732 -2 + chr1 27457198 27457270 chr1,27457177,27457270,-,L1ME3E,LINE,L1,-2691,3455,3364,27454486,27460633 -1 - chr1 27457293 27457338 chr1,27457293,27457511,+,AluJb,SINE,Alu,1,217,-95,27457293,27457606 +4 + chr1 27459296 27459454 chr1,27459164,27459454,-,AluJr4,SINE,Alu,-15,297,1,27459149,27459454 -2 - chr1 27530360 27530424 chr1,27530254,27530424,-,AluSx3,SINE,Alu,-2,309,139,27530252,27530562 -2 - chr1 27530453 27530561 chr1,27530453,27530703,+,MIR,SINE,MIR,23,260,-2,27530431,27530705 +5 + chr1 27660394 27660722 chr1,27660394,27661103,-,L2b,LINE,L2,-1,3374,2560,27660393,27663662 +2 - chr1 27669966 27670276 chr1,27669966,27670291,-,MER21B,LTR,ERVL,-64,804,467,27669902,27670757 -5 - chr1 27820296 27820341 chr1,27820296,27820600,-,L1P1,LINE,L1,-794,5366,5063,27819502,27825662 -5 - chr1 27938875 27938963 chr1,27938616,27938963,+,MER47A,DNA,TcMar-Tigger,1,366,0,27938616,27938963 -5 + chr1 27939065 27939079 chr1,27939065,27939189,+,MIRb,SINE,MIR,126,258,-10,27938940,27939199 -2 + chr1 28239743 28240042 chr1,28239743,28240042,+,AluSx1,SINE,Alu,1,299,-13,28239743,28240055 -6 + chr1 28240292 28240353 chr1,28240292,28240353,+,MER5A,DNA,hAT-Charlie,17,76,-113,28240276,28240466 -6 + chr1 28240353 28240651 chr1,28240353,28240651,+,AluSx4,SINE,Alu,1,299,-11,28240353,28240662 -6 + chr1 28240651 28240767 chr1,28240651,28240767,+,MER5A,DNA,hAT-Charlie,77,189,0,28240575,28240767 -6 + chr1 28240772 28240979 chr1,28240772,28240979,-,Charlie14a,DNA,hAT-Charlie,-932,234,2,28239840,28240980 +6 - chr1 28241080 28241213 chr1,28241080,28241213,-,MLT1O,LTR,ERVL-MaLR,-17,525,401,28241063,28241613 +6 - chr1 28241307 28241453 chr1,28241307,28241581,+,AluJb,SINE,Alu,1,297,-15,28241307,28241596 -1 + chr1 28247144 28247158 chr1,28247126,28247158,+,(GAAA)n,Simple_repeat,Simple_repeat,1,32,0,28247126,28247158 +1 + chr1 28506351 28506484 chr1,28506187,28506484,-,AluSx,SINE,Alu,-1,311,1,28506186,28506484 -1 - chr1 28506774 28506950 chr1,28506774,28506950,-,AluSg,SINE,Alu,-85,225,51,28506689,28507000 -6 - chr1 28507043 28507076 chr1,28507043,28507076,-,Alu,SINE,Alu,-100,33,1,28506943,28507076 -6 - chr1 28507364 28507571 chr1,28507364,28507571,+,U17,snRNA,snRNA,1,207,0,28507364,28507571 +6 + chr1 28507600 28507904 chr1,28507600,28507904,-,AluSg,SINE,Alu,-8,302,2,28507592,28507905 -6 - chr1 28507975 28508082 chr1,28507975,28508082,+,FRAM,SINE,Alu,48,152,-24,28507928,28508106 +6 + chr1 28508996 28509066 chr1,28508996,28509066,-,AluSz6,SINE,Alu,-35,277,204,28508961,28509269 -6 - chr1 28509305 28509538 chr1,28509305,28509538,-,AluSx3,SINE,Alu,-75,236,1,28509230,28509538 -6 - chr1 28510356 28510605 chr1,28510356,28510605,+,AluSc,SINE,Alu,2,287,-22,28510355,28510627 +6 + chr1 28510631 28510661 chr1,28510631,28510661,-,L2a,LINE,L2,-28,3398,3368,28510603,28514028 -6 - chr1 28544460 28544505 chr1,28544337,28544505,+,AluY,SINE,Alu,133,300,-11,28544205,28544516 +1 + chr1 28544505 28545413 chr1,28544505,28545413,-,LTR13,LTR,ERVK,-101,906,3,28544404,28545415 -6 - chr1 28545413 28545708 chr1,28545413,28545708,+,AluSx,SINE,Alu,18,304,-8,28545396,28545716 +6 + chr1 28545718 28546009 chr1,28545718,28546009,-,AluSz,SINE,Alu,-14,298,1,28545704,28546009 -6 - chr1 28546022 28546242 chr1,28546022,28546242,-,MIRb,SINE,MIR,-2,266,15,28546020,28546256 -6 - chr1 28546278 28546309 chr1,28546278,28546309,+,MIR,SINE,MIR,211,241,-21,28546068,28546330 +6 + chr1 28546323 28546487 chr1,28546323,28546487,-,HAL1,LINE,L1,-410,2097,1912,28545913,28548398 -6 - chr1 28546522 28546542 chr1,28546522,28546614,+,HAL1,LINE,L1,2078,2173,-334,28544445,28546948 +5 + chr1 28580016 28580328 chr1,28580016,28580328,+,AluSx1,SINE,Alu,1,303,-9,28580016,28580337 -6 + chr1 28581221 28581354 chr1,28581221,28581354,-,MIRb,SINE,MIR,-112,156,26,28581109,28581379 +1 - chr1 28582325 28582421 chr1,28582325,28582421,-,MIRb,SINE,MIR,-28,240,125,28582297,28582545 +6 - chr1 28582606 28582751 chr1,28582606,28582751,-,AluJb,SINE,Alu,-20,292,148,28582586,28582898 +6 - chr1 28582788 28582983 chr1,28582788,28583098,+,AluY,SINE,Alu,2,304,-7,28582787,28583105 -1 + chr1 28646091 28646285 chr1,28645990,28646285,+,AluJo,SINE,Alu,1,291,-21,28645990,28646306 +1 + chr1 28867575 28867640 chr1,28867504,28867640,-,AluJr,SINE,Alu,-186,126,2,28867318,28867641 -1 - chr1 28867699 28867737 chr1,28867699,28867737,+,MIR3,SINE,MIR,105,142,-66,28867595,28867803 +6 + chr1 28867703 28867822 chr1,28867703,28867822,+,MIRb,SINE,MIR,115,257,-11,28867589,28867833 +6 + chr1 28867969 28868094 chr1,28867969,28868094,-,L2c,LINE,L2,-1220,2199,2071,28866749,28870164 -6 - chr1 28868178 28868298 chr1,28868178,28868298,+,MIR3,SINE,MIR,45,169,-39,28868134,28868337 +6 + chr1 28868324 28868397 chr1,28868324,28868397,+,MIRb,SINE,MIR,51,124,-144,28868274,28868541 +6 + chr1 28868415 28868488 chr1,28868415,28868488,+,MIRb,SINE,MIR,194,267,-1,28868222,28868489 +6 + chr1 28870507 28870542 chr1,28870239,28870542,-,AluSz,SINE,Alu,0,312,1,28870239,28870542 -5 - chr1 28870483 28870542 chr1,28870239,28870542,-,AluSz,SINE,Alu,0,312,1,28870239,28870542 +5 - chr1 28870850 28870989 chr1,28870850,28870989,+,MIR3,SINE,MIR,33,180,-28,28870818,28871017 +6 + chr1 28870850 28870989 chr1,28870850,28870989,+,MIR3,SINE,MIR,33,180,-28,28870818,28871017 -6 + chr1 28877180 28877270 chr1,28877180,28877270,+,(CACATA)n,Simple_repeat,Simple_repeat,1,93,0,28877180,28877270 -6 + chr1 29146908 29146994 chr1,29146750,29147050,+,AluSq,SINE,Alu,1,304,-9,29146750,29147059 -1 + chr1 29152500 29152639 chr1,29152500,29152639,+,L2b,LINE,L2,2925,3079,-296,29149576,29152935 +6 + chr1 29152639 29152687 chr1,29152639,29152947,+,AluSx,SINE,Alu,4,307,-5,29152636,29152952 +4 + chr1 29152871 29152947 chr1,29152639,29152947,+,AluSx,SINE,Alu,4,307,-5,29152636,29152952 +2 + chr1 29152947 29152991 chr1,29152947,29153135,+,L2b,LINE,L2,3080,3286,-89,29149868,29153224 +5 + chr1 29224723 29224801 chr1,29224693,29224801,-,MIR3,SINE,MIR,-48,160,48,29224645,29224848 -2 - chr1 29329653 29329803 chr1,29329653,29329803,-,MIR,SINE,MIR,-42,226,73,29329611,29329875 +6 - chr1 29329815 29330365 chr1,29329815,29330365,+,L2b,LINE,L2,2784,3374,-1,29327032,29330366 -6 + chr1 29330364 29330421 chr1,29330364,29330421,-,MIRb,SINE,MIR,-186,82,26,29330178,29330446 +6 - chr1 29330452 29330603 chr1,29330452,29330603,+,MIR3,SINE,MIR,27,189,-19,29330426,29330622 -6 + chr1 29330798 29330956 chr1,29330798,29330956,-,MIRb,SINE,MIR,-78,190,28,29330720,29330983 +6 - chr1 29333292 29333308 chr1,29333292,29334777,+,ERVL-E-int,LTR,ERVL,292,1870,-3784,29333001,29338561 -2 + chr1 29349683 29349729 chr1,29349456,29349729,-,L2b,LINE,L2,-25,3350,3061,29349431,29352789 +4 - chr1 29350054 29350114 chr1,29350054,29350332,-,MLT1L,LTR,ERVL-MaLR,-259,351,73,29349795,29350404 +1 - chr1 29709332 29709451 chr1,29709332,29709451,-,MIRc,SINE,MIR,-15,253,115,29709317,29709565 +6 - chr1 30013952 30013971 chr1,30013804,30013971,+,MIR,SINE,MIR,43,243,-19,30013762,30013990 -5 + chr1 30014026 30014215 chr1,30014026,30014215,-,MIRb,SINE,MIR,-80,188,2,30013946,30014216 +6 - chr1 30015244 30015295 chr1,30015140,30015303,+,MIR,SINE,MIR,1,171,-37,30015140,30015340 -3 + chr1 30016720 30016898 chr1,30016406,30016898,-,L1M4,LINE,L1,-5118,2399,1934,30011288,30018831 +4 - chr1 30016898 30016921 chr1,30016898,30017083,+,Charlie1a,DNA,hAT-Charlie,1220,1410,-45,30015679,30017128 -2 + chr1 30025025 30025178 chr1,30024969,30025178,-,L3,LINE,CR1,-79,4020,3802,30024890,30028979 +4 - chr1 30029369 30029427 chr1,30029369,30029427,+,MIRc,SINE,MIR,162,220,-48,30029208,30029475 -6 + chr1 30036824 30036954 chr1,30036824,30036954,-,MLT1K,LTR,ERVL-MaLR,-249,346,209,30036575,30037162 +6 - chr1 30036991 30037003 chr1,30036991,30037072,-,MER5A,DNA,hAT-Charlie,-24,165,80,30036967,30037151 +2 - chr1 30140263 30140275 chr1,30140161,30140275,-,Arthur1B,DNA,hAT-Tip100,-1108,117,1,30139053,30140275 -1 - chr1 30141135 30141607 chr1,30141086,30141670,+,LTR31,LTR,ERV1,9,619,0,30141078,30141670 +5 + chr1 30411058 30411079 chr1,30411058,30411421,-,MSTD,LTR,ERVL-MaLR,0,396,1,30411058,30411421 +2 - chr1 30411475 30411569 chr1,30411475,30411569,-,UCON33,DNA,TcMar-Tigger,-14,306,213,30411461,30411781 +6 - chr1 30411574 30411604 chr1,30411574,30411604,+,(CTC)n,Simple_repeat,Simple_repeat,1,31,0,30411574,30411604 -6 + chr1 30415825 30415840 chr1,30415738,30415840,+,MIR,SINE,MIR,31,133,-129,30415708,30415969 +1 + chr1 30415861 30415873 chr1,30415861,30416026,+,MIRb,SINE,MIR,94,260,-8,30415768,30416034 +4 + chr1 30416932 30416953 chr1,30416932,30417068,-,MIRb,SINE,MIR,-80,188,50,30416852,30417117 -4 - chr1 30420961 30421073 chr1,30420961,30421073,+,MIRb,SINE,MIR,35,150,-118,30420927,30421191 +6 + chr1 30719891 30719971 chr1,30719891,30719971,+,MIR3,SINE,MIR,96,167,-41,30719796,30720012 +6 + chr1 30720465 30720538 chr1,30720465,30720538,+,MIR,SINE,MIR,66,148,-114,30720400,30720652 +6 + chr1 30720907 30721092 chr1,30720907,30721092,-,MIR,SINE,MIR,-54,208,13,30720853,30721104 -6 - chr1 30721288 30721351 chr1,30721195,30721351,+,MIRb,SINE,MIR,44,219,-49,30721152,30721400 +2 + chr1 30726458 30726491 chr1,30726458,30726491,+,MIRc,SINE,MIR,4,36,-232,30726455,30726723 +6 + chr1 30726598 30726811 chr1,30726598,30726811,-,MER113A,DNA,hAT-Charlie,-14,300,78,30726584,30726888 -5 - chr1 30815478 30815553 chr1,30815478,30815706,+,MIRb,SINE,MIR,37,268,0,30815442,30815706 -1 + chr1 30826605 30826652 chr1,30826496,30826808,-,AluSz6,SINE,Alu,0,312,2,30826496,30826809 -3 - chr1 30829748 30829812 chr1,30829734,30829812,+,LTR33B,LTR,ERVL,90,166,-337,30829645,30830149 +2 + chr1 30858316 30858366 chr1,30858316,30858419,+,Tigger19b,DNA,TcMar-Tigger,246,356,-194,30858071,30858613 +4 + chr1 30858944 30858985 chr1,30858944,30858985,+,(CA)n,Simple_repeat,Simple_repeat,1,41,0,30858944,30858985 +6 + chr1 30859108 30859236 chr1,30859108,30859236,-,L2b,LINE,L2,-5,3370,3238,30859103,30862473 -6 - chr1 30859322 30859620 chr1,30859322,30859620,-,AluSx,SINE,Alu,-18,294,1,30859304,30859620 -6 - chr1 30859649 30859702 chr1,30859649,30859702,+,(AC)n,Simple_repeat,Simple_repeat,1,53,0,30859649,30859702 +6 + chr1 30859791 30860060 chr1,30859791,30860060,+,L2c,LINE,L2,2934,3237,-150,30856858,30860210 +6 + chr1 31333067 31333142 chr1,31332921,31333142,-,L1ME4a,LINE,L1,-138,5986,5721,31332783,31338862 +5 - chr1 31518435 31518481 chr1,31517844,31518481,+,HERVL-int,LTR,ERVL,5017,5654,0,31512828,31518481 +1 + chr1 31518485 31518836 chr1,31518485,31518912,+,MLT2A1,LTR,ERVL,5,437,-7,31518481,31518919 +4 + chr1 31522408 31522492 chr1,31522408,31522492,+,L2c,LINE,L2,3305,3386,-1,31519104,31522493 +6 + chr1 31523154 31523257 chr1,31523154,31523257,-,MIRc,SINE,MIR,-34,234,115,31523120,31523371 -6 - chr1 31523257 31523366 chr1,31523257,31523366,+,MIRb,SINE,MIR,2,111,-157,31523256,31523523 +6 + chr1 31523366 31523665 chr1,31523366,31523665,-,AluSx,SINE,Alu,-11,301,2,31523355,31523666 -5 - chr1 31523665 31523734 chr1,31523665,31523734,+,MIRb,SINE,MIR,109,177,-91,31523557,31523825 +6 + chr1 31524010 31524057 chr1,31524010,31524057,+,MIR,SINE,MIR,67,113,-149,31523944,31524206 +6 + chr1 31538975 31539092 chr1,31538949,31539250,-,AluJb,SINE,Alu,-12,300,1,31538937,31539250 -3 - chr1 31540577 31540699 chr1,31540462,31540699,-,MamTip3,DNA,hAT-Tip100,-58,442,194,31540404,31540892 -2 - chr1 31571611 31571742 chr1,31571611,31571771,+,MIRc,SINE,MIR,7,167,-63,31571605,31571834 -2 + chr1 31572035 31572303 chr1,31571817,31572387,+,L2a,LINE,L2,2727,3291,-135,31569091,31572522 -3 + chr1 31644049 31644157 chr1,31643930,31644157,-,MIRb,SINE,MIR,-9,253,6,31643921,31644162 -1 - chr1 31644233 31644296 chr1,31644233,31644359,+,MIR3,SINE,MIR,36,160,-48,31644198,31644407 +4 + chr1 31649266 31649285 chr1,31649266,31649285,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,31649266,31649285 +6 + chr1 31649292 31649371 chr1,31649292,31649596,+,AluSx,SINE,Alu,1,297,-15,31649292,31649611 +5 + chr1 31653440 31653492 chr1,31653361,31653492,+,L2b,LINE,L2,3244,3368,-7,31650118,31653499 +2 + chr1 31655911 31655990 chr1,31655878,31655990,+,L2b,LINE,L2,3065,3186,-189,31652814,31656179 +2 + chr1 31656156 31656185 chr1,31656156,31656198,+,(AATC)n,Simple_repeat,Simple_repeat,1,42,0,31656156,31656198 +4 + chr1 31657293 31657401 chr1,31657293,31657401,+,L2b,LINE,L2,3262,3370,-5,31654032,31657406 +6 + chr1 31842019 31842304 chr1,31842010,31842304,-,AluYd8,SINE,Alu,0,299,1,31842010,31842304 +5 - chr1 31842519 31842634 chr1,31842519,31842634,+,L2b,LINE,L2,2977,3092,-283,31839543,31842917 -6 + chr1 31842668 31842789 chr1,31842668,31842789,-,LTR88b,LTR,Gypsy?,-652,185,40,31842016,31842828 +6 - chr1 31842877 31842942 chr1,31842877,31842942,+,LTR88c,LTR,Gypsy?,668,730,-132,31842210,31843074 -6 + chr1 31842945 31842984 chr1,31842945,31842984,+,(CT)n,Simple_repeat,Simple_repeat,1,39,0,31842945,31842984 -6 + chr1 31843001 31843066 chr1,31843001,31843066,-,L2a,LINE,L2,0,3375,3305,31843001,31846370 +6 - chr1 31843070 31843234 chr1,31843070,31843234,+,MER91A,DNA,hAT-Tip100,23,196,0,31843048,31843234 -6 + chr1 31843234 31843326 chr1,31843234,31843326,-,L2a,LINE,L2,-63,3324,3222,31843171,31846547 +6 - chr1 31843333 31843454 chr1,31843333,31843454,-,MIRb,SINE,MIR,-112,156,17,31843221,31843470 +6 - chr1 31843693 31843821 chr1,31843693,31843821,-,LTR88b,LTR,Gypsy?,-507,330,197,31843186,31844017 +6 - chr1 31843862 31844032 chr1,31843862,31844032,+,L1M5,LINE,L1,4451,4617,-1529,31839412,31845561 -6 + chr1 31844032 31844147 chr1,31844032,31844188,+,AluJr,SINE,Alu,1,145,-167,31844032,31844355 -2 + chr1 31851913 31852014 chr1,31851884,31852193,-,AluY,SINE,Alu,0,311,1,31851884,31852193 +5 - chr1 31855441 31855518 chr1,31855411,31855518,-,L2a,LINE,L2,-7,3419,3305,31855404,31858822 +4 - chr1 31933020 31933210 chr1,31933000,31933265,-,AluJb,SINE,Alu,-11,301,35,31932989,31933299 -1 - chr1 31933650 31933745 chr1,31933475,31933745,+,AluSx,SINE,Alu,27,305,-7,31933449,31933752 +2 + chr1 31933770 31933841 chr1,31933770,31933841,+,MIRb,SINE,MIR,129,206,-62,31933642,31933903 +6 + chr1 32052324 32052374 chr1,32052324,32052374,+,(AAAG)n,Simple_repeat,Simple_repeat,1,50,0,32052324,32052374 -6 + chr1 32052398 32052696 chr1,32052398,32052696,-,AluY,SINE,Alu,-13,298,1,32052385,32052696 +6 - chr1 32206781 32206814 chr1,32206781,32206863,+,MIR3,SINE,MIR,94,179,-29,32206688,32206892 -1 + chr1 32349235 32349329 chr1,32349235,32349329,+,L3b,LINE,CR1,4939,5034,-198,32344297,32349527 -6 + chr1 32349721 32349804 chr1,32349721,32349804,-,L2a,LINE,L2,-3,3423,3282,32349718,32353085 +6 - chr1 32349804 32349821 chr1,32349804,32350051,+,AluY,SINE,Alu,6,279,-32,32349799,32350083 -2 + chr1 32717734 32717886 chr1,32717590,32717886,-,AluJb,SINE,Alu,-13,299,2,32717577,32717887 +5 - chr1 32725078 32725152 chr1,32725041,32725152,+,MIRb,SINE,MIR,88,214,-54,32724954,32725206 -4 + chr1 33031294 33031496 chr1,33031294,33031496,+,MIRb,SINE,MIR,42,267,-1,33031253,33031497 +6 + chr1 33031545 33031766 chr1,33031545,33031766,+,MIRb,SINE,MIR,5,231,-37,33031541,33031803 +6 + chr1 33032169 33032391 chr1,33032169,33032391,-,MER102c,DNA,hAT-Charlie,-19,312,88,33032150,33032478 -6 - chr1 33032416 33032469 chr1,33032416,33032881,+,L1MC5,LINE,L1,8354,8818,-486,33024063,33033367 +5 + chr1 33142456 33142591 chr1,33142456,33142591,-,MIR3,SINE,MIR,0,208,82,33142456,33142672 +6 - chr1 33142777 33142946 chr1,33142777,33142946,+,MIRb,SINE,MIR,9,198,-70,33142769,33143016 -6 + chr1 33162857 33163006 chr1,33162857,33163006,+,MIR,SINE,MIR,24,180,-88,33162834,33163094 +6 + chr1 33163026 33163338 chr1,33163026,33163338,-,AluSq,SINE,Alu,-1,312,1,33163025,33163338 -6 - chr1 33163365 33163412 chr1,33163365,33163412,-,L2b,LINE,L2,-20,3355,3308,33163345,33166719 -6 - chr1 33164217 33164278 chr1,33164217,33164278,-,MIR3,SINE,MIR,-105,103,43,33164112,33164320 -6 - chr1 33164466 33164577 chr1,33164466,33164577,-,MIR3,SINE,MIR,-118,150,28,33164348,33164604 -6 - chr1 33164585 33164610 chr1,33164585,33164610,+,(TGTT)n,Simple_repeat,Simple_repeat,1,25,0,33164585,33164610 +6 + chr1 33164766 33164793 chr1,33164766,33164793,+,(ATTC)n,Simple_repeat,Simple_repeat,1,27,0,33164766,33164793 +6 + chr1 33164793 33165089 chr1,33164793,33165089,-,AluJo,SINE,Alu,-27,285,3,33164766,33165091 -6 - chr1 33165693 33165785 chr1,33165693,33165785,+,L2a,LINE,L2,2595,2684,-735,33163099,33166520 +6 + chr1 33165888 33166298 chr1,33165888,33166410,+,MER1A,DNA,hAT-Charlie,1,529,0,33165888,33166410 +5 + chr1 33261212 33261357 chr1,33261191,33261357,-,L3,LINE,CR1,-68,4031,3867,33261123,33265223 -1 - chr1 33313324 33313425 chr1,33313175,33313425,-,AluJo,SINE,Alu,0,312,45,33313175,33313469 -1 - chr1 33314065 33314362 chr1,33314050,33314362,-,AluSx1,SINE,Alu,0,312,1,33314050,33314362 -1 - chr1 33314813 33314823 chr1,33314813,33314977,+,L1ME4c,LINE,L1,80,228,-602,33314734,33315579 +4 + chr1 33325216 33325564 chr1,33325216,33325564,+,MLT1F,LTR,ERVL-MaLR,33,407,-141,33325184,33325705 +5 + chr1 33325575 33325665 chr1,33325575,33325665,+,MLT1F-int,LTR,ERVL-MaLR,1162,1311,-178,33324414,33325843 +6 + chr1 33325659 33325783 chr1,33325659,33325783,+,MLT1F,LTR,ERVL-MaLR,441,569,0,33325219,33325783 +6 + chr1 33325783 33326043 chr1,33325783,33326671,+,MLT1F-int,LTR,ERVL-MaLR,1,900,-589,33325783,33327260 +5 + chr1 33350352 33350371 chr1,33350206,33350371,-,MIR,SINE,MIR,-2,260,69,33350204,33350439 -1 - chr1 33350422 33350447 chr1,33350422,33350462,+,MIR,SINE,MIR,219,258,-4,33350204,33350466 +4 + chr1 33358921 33359074 chr1,33358921,33359196,+,MIR,SINE,MIR,1,253,-15,33358921,33359211 +4 + chr1 33868953 33869049 chr1,33868766,33869068,-,L2a,LINE,L2,-159,3267,2959,33868607,33872026 -1 - chr1 33870690 33871008 chr1,33870690,33871171,+,MLT1F2,LTR,ERVL-MaLR,2,538,-22,33870689,33871193 +4 + chr1 33873545 33873811 chr1,33873317,33873853,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,33873317,33873853 +5 + chr1 33875469 33875592 chr1,33875469,33876079,-,MER90a,LTR,ERV1,0,614,1,33875469,33876079 -4 - chr1 33882170 33882226 chr1,33882170,33882226,-,MIRc,SINE,MIR,-146,122,65,33882024,33882290 -6 - chr1 33884570 33884748 chr1,33884237,33884748,+,L2,LINE,L2,2325,2879,-540,33881913,33885288 +2 + chr1 33885086 33885203 chr1,33885023,33885203,-,MIRb,SINE,MIR,-31,237,41,33884992,33885243 -2 - chr1 33885431 33885458 chr1,33885431,33885475,+,(AATTC)n,Simple_repeat,Simple_repeat,1,44,0,33885431,33885475 +5 + chr1 34850694 34850795 chr1,34850616,34850795,-,MIR1_Amn,SINE,MIR,-22,246,17,34850594,34850811 -1 - chr1 34851132 34851149 chr1,34851132,34851195,+,MIRb,SINE,MIR,158,232,-36,34850975,34851231 +4 + chr1 34851292 34851422 chr1,34851215,34851422,-,MIRb,SINE,MIR,-42,226,6,34851173,34851427 -2 - chr1 34974356 34974717 chr1,34974287,34974717,+,L1ME4b,LINE,L1,302,775,-117,34973986,34974834 -5 + chr1 34974720 34974928 chr1,34974720,34974928,-,AluJb,SINE,Alu,-4,308,84,34974716,34975011 +6 - chr1 34975625 34975713 chr1,34975625,34975713,-,L2a,LINE,L2,-1,3425,3336,34975624,34979048 +5 - chr1 34975917 34975953 chr1,34975917,34975953,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,34975917,34975953 -6 + chr1 34976040 34976221 chr1,34976040,34976221,-,L2a,LINE,L2,-343,3076,2868,34975697,34979088 +6 - chr1 34976333 34976406 chr1,34976333,34976406,-,MIRb,SINE,MIR,-165,103,21,34976168,34976426 +6 - chr1 34976953 34977031 chr1,34976953,34977031,+,(CAGGCG)n,Simple_repeat,Simple_repeat,1,79,0,34976953,34977031 -6 + chr1 34977284 34977325 chr1,34977284,34977325,+,(CAGGCC)n,Simple_repeat,Simple_repeat,1,41,0,34977284,34977325 -6 + chr1 34985198 34985208 chr1,34985165,34985208,+,(CCGCT)n,Simple_repeat,Simple_repeat,1,45,0,34985165,34985208 -4 + chr1 35569829 35569883 chr1,35569829,35569883,-,L2a,LINE,L2,-8,3418,3365,35569821,35573247 +6 - chr1 35743506 35743530 chr1,35743506,35743530,+,(TCC)n,Simple_repeat,Simple_repeat,1,24,0,35743506,35743530 +6 + chr1 35926930 35926963 chr1,35926930,35926963,+,(T)n,Simple_repeat,Simple_repeat,1,33,0,35926930,35926963 +6 + chr1 35927226 35927668 chr1,35927226,35927668,-,MLT1L,LTR,ERVL-MaLR,-2,608,127,35927224,35927794 -6 - chr1 35927761 35927879 chr1,35927761,35927879,-,MIRb,SINE,MIR,-121,147,10,35927640,35927888 -6 - chr1 35928188 35928286 chr1,35928188,35928286,-,L1M4,LINE,L1,-2359,5426,5318,35925829,35933603 -6 - chr1 35928286 35928572 chr1,35928286,35928572,-,AluJr,SINE,Alu,-18,294,12,35928268,35928583 -6 - chr1 35928572 35928820 chr1,35928572,35928820,-,L1M4,LINE,L1,-829,5317,5081,35927743,35933900 -6 - chr1 35929009 35929115 chr1,35929009,35929115,-,L2a,LINE,L2,-1,3425,3322,35929008,35932436 -6 - chr1 35929828 35929951 chr1,35929828,35929951,-,MIRb,SINE,MIR,-54,214,84,35929774,35930034 +6 - chr1 35930087 35930115 chr1,35930087,35930180,-,L2a,LINE,L2,-1,3425,3337,35930086,35933516 +1 - chr1 35992109 35992308 chr1,35991722,35992424,-,HAL1,LINE,L1,-1451,1056,314,35990271,35992737 +5 - chr1 36013425 36013487 chr1,36013397,36013487,-,Charlie4z,DNA,hAT-Charlie,-82,85,1,36013315,36013487 +4 - chr1 36323836 36324031 chr1,36323836,36324031,-,MIRb,SINE,MIR,-22,246,29,36323814,36324059 -6 - chr1 36327871 36327918 chr1,36327871,36327918,+,(CCTG)n,Simple_repeat,Simple_repeat,1,48,0,36327871,36327918 +6 + chr1 36328488 36328787 chr1,36328488,36328787,+,AluJb,SINE,Alu,1,298,-14,36328488,36328801 +6 + chr1 36328805 36329025 chr1,36328805,36329025,-,MIRb,SINE,MIR,0,268,18,36328805,36329042 -6 - chr1 36329052 36329215 chr1,36329052,36329215,-,MER20B,DNA,hAT-Charlie,-6,777,610,36329046,36329824 -6 - chr1 36773140 36773193 chr1,36772953,36773193,+,MLT1I,LTR,ERVL-MaLR,14,273,-138,36772940,36773331 +1 + chr1 36773276 36773313 chr1,36773276,36773448,-,MLT1A0,LTR,ERVL-MaLR,-185,180,1,36773091,36773448 -4 - chr1 37262739 37262820 chr1,37262599,37262820,+,MamRep564,Unknown,Unknown,3,233,-124,37262597,37262944 -5 + chr1 37270520 37270602 chr1,37270520,37270643,+,MER5A1,DNA,hAT-Charlie,2,134,-32,37270519,37270675 -2 + chr1 37276141 37276236 chr1,37276141,37276236,-,MamSINE1,SINE,tRNA-RTE,-22,268,176,37276119,37276411 +6 - chr1 37276156 37276257 chr1,37276156,37276257,-,MamRTE1,LINE,RTE-BovB,-3533,279,183,37272623,37276439 +6 - chr1 37455314 37455417 chr1,37455314,37455417,-,MIR,SINE,MIR,-88,120,4,37455226,37455420 +6 - chr1 37456367 37456459 chr1,37456345,37456645,+,AluJb,SINE,Alu,2,301,-11,37456344,37456656 -3 + chr1 37800755 37800847 chr1,37800755,37800847,-,L2c,LINE,L2,-5,3382,3286,37800750,37804132 +6 - chr1 37860831 37861091 chr1,37860831,37861128,-,AluJr,SINE,Alu,-19,293,1,37860812,37861128 -4 - chr1 37861495 37861580 chr1,37861443,37861753,+,AluSq,SINE,Alu,1,306,-7,37861443,37861760 +5 + chr1 38105632 38105752 chr1,38105602,38105915,-,AluSx3,SINE,Alu,-4,307,1,38105598,38105915 -5 - chr1 38209034 38209112 chr1,38208888,38209112,-,MER58A,DNA,hAT-Charlie,0,224,1,38208888,38209112 +5 - chr1 38209112 38209301 chr1,38209112,38209301,+,LTR16C,LTR,ERVL,293,489,0,38208820,38209301 -6 + chr1 38209303 38209369 chr1,38209303,38209369,-,MIR,SINE,MIR,-114,148,82,38209189,38209450 +6 - chr1 38209672 38209809 chr1,38209672,38209809,-,MIRc,SINE,MIR,-87,181,42,38209585,38209850 +6 - chr1 38209934 38210140 chr1,38209934,38210140,-,MIR3,SINE,MIR,-3,205,2,38209931,38210141 +6 - chr1 38210722 38210822 chr1,38210722,38210935,+,MIRb,SINE,MIR,41,260,-8,38210682,38210943 -2 + chr1 38211734 38211822 chr1,38211182,38212276,+,L2a,LINE,L2,2146,3383,-43,38209037,38212319 -3 + chr1 38212098 38212276 chr1,38211182,38212276,+,L2a,LINE,L2,2146,3383,-43,38209037,38212319 -4 + chr1 38212397 38212451 chr1,38212397,38212611,-,L2c,LINE,L2,-224,3163,2921,38212173,38215531 +2 - chr1 38214717 38214767 chr1,38214604,38214783,+,MIR3,SINE,MIR,17,215,-53,38214588,38214836 -1 + chr1 38913540 38913628 chr1,38913521,38913646,-,FLAM_A,SINE,Alu,-10,132,4,38913511,38913649 -3 - chr1 39206881 39206957 chr1,39206881,39207254,+,Charlie15b,DNA,hAT-Charlie,234,613,-448,39206648,39207702 +5 + chr1 39257535 39257601 chr1,39257307,39257601,-,AluY,SINE,Alu,-17,294,1,39257290,39257601 +4 - chr1 39257601 39257649 chr1,39257601,39257864,+,L1ME1,LINE,L1,5890,6153,-26,39251712,39257890 -1 + chr1 39523875 39523974 chr1,39523875,39523974,+,FLAM_C,SINE,Alu,1,127,-16,39523875,39523990 -6 + chr1 39523979 39524009 chr1,39523979,39524009,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,39523979,39524009 -6 + chr1 39524467 39524890 chr1,39524467,39524890,-,L2b,LINE,L2,-274,3101,2665,39524193,39527554 +1 - chr1 39525001 39525085 chr1,39525001,39525085,-,L2b,LINE,L2,-983,2436,2354,39524018,39527438 +6 - chr1 39529021 39529164 chr1,39529021,39529186,+,MIRb,SINE,MIR,74,262,-6,39528948,39529192 -2 + chr1 39537205 39537249 chr1,39537205,39537249,-,L2c,LINE,L2,-233,3154,3111,39536972,39540359 +6 - chr1 39537254 39537282 chr1,39537254,39537564,+,AluJb,SINE,Alu,1,309,-3,39537254,39537567 -1 + chr1 39633726 39633903 chr1,39633726,39634086,+,L2c,LINE,L2,2466,2862,-557,39631261,39634643 +5 + chr1 39788976 39789000 chr1,39788922,39789000,+,G-rich,Low_complexity,Low_complexity,1,78,0,39788922,39789000 +1 + chr1 39789019 39789070 chr1,39789019,39789070,+,G-rich,Low_complexity,Low_complexity,1,52,0,39789019,39789070 +6 + chr1 39789649 39789716 chr1,39789649,39789716,-,L2a,LINE,L2,-282,3093,3028,39789367,39792743 -6 - chr1 39789732 39789930 chr1,39789732,39789930,-,MIR,SINE,MIR,0,268,60,39789732,39789989 -6 - chr1 40256427 40257324 chr1,40256207,40257324,-,Charlie2a,DNA,hAT-Charlie,-37,2824,1478,40256170,40258801 +5 - chr1 40257402 40257623 chr1,40257402,40257623,-,Charlie2b,DNA,hAT-Charlie,-2130,652,418,40255272,40258040 +6 - chr1 40464319 40464351 chr1,40464304,40464351,+,(TTA)n,Simple_repeat,Simple_repeat,1,47,0,40464304,40464351 +1 + chr1 40464351 40464467 chr1,40464351,40464467,-,AluJr,SINE,Alu,-193,119,1,40464158,40464467 -6 - chr1 40464467 40464599 chr1,40464467,40464599,-,Charlie18a,DNA,hAT-Charlie,-200,142,2,40464267,40464600 -6 - chr1 40464799 40464932 chr1,40464799,40464932,-,MER58A,DNA,hAT-Charlie,0,224,93,40464799,40465024 -6 - chr1 40464932 40465158 chr1,40464932,40465158,-,MER20,DNA,hAT-Charlie,-4,215,1,40464928,40465158 -6 - chr1 40465158 40465249 chr1,40465158,40465249,-,MER58A,DNA,hAT-Charlie,-132,92,2,40465026,40465250 -6 - chr1 40465466 40465580 chr1,40465466,40465580,-,L1MC5,LINE,L1,-186,9118,9006,40465280,40474585 -6 - chr1 40466214 40466689 chr1,40466214,40466689,+,L2a,LINE,L2,2975,3419,-7,40463240,40466696 +6 + chr1 40473055 40473545 chr1,40472854,40473545,+,L2a,LINE,L2,2323,3184,-242,40470532,40473787 +1 + chr1 40473563 40473695 chr1,40473563,40473695,-,L1MEg,LINE,L1,-5067,2019,1877,40468496,40475571 -6 - chr1 40473665 40474059 chr1,40473665,40474661,-,L1ME3A,LINE,L1,-2,6171,4707,40473663,40479367 -5 - chr1 40493157 40493243 chr1,40492943,40493243,+,AluSq2,SINE,Alu,1,301,-12,40492943,40493255 -5 + chr1 40493243 40493358 chr1,40493243,40493358,-,L1ME3Cz,LINE,L1,-1798,4348,4233,40491445,40497590 +6 - chr1 40493406 40493666 chr1,40493406,40493666,-,LTR78,LTR,ERV1,-100,1204,923,40493306,40494588 +6 - chr1 40681495 40681550 chr1,40681444,40681636,+,MIR,SINE,MIR,22,201,-61,40681423,40681697 -3 + chr1 40687525 40687588 chr1,40687319,40687625,+,AluSq2,SINE,Alu,1,306,-7,40687319,40687632 -1 + chr1 40690380 40690435 chr1,40690366,40690435,-,AluJo,SINE,Alu,-17,295,227,40690349,40690661 +5 - chr1 40690451 40690579 chr1,40690451,40690579,-,MIRc,SINE,MIR,-24,244,101,40690427,40690679 +6 - chr1 40690917 40691085 chr1,40690917,40691085,+,MIRc,SINE,MIR,32,217,-51,40690886,40691136 -6 + chr1 40864176 40864361 chr1,40864176,40864361,+,MIRc,SINE,MIR,69,245,-23,40864108,40864384 +6 + chr1 40876510 40876670 chr1,40876510,40876704,+,MLT1H2,LTR,ERVL-MaLR,287,474,-15,40876224,40876719 +5 + chr1 41260743 41260873 chr1,41260482,41260897,+,MLT2B1,LTR,ERVL,1,456,-64,41260482,41260961 +1 + chr1 41263841 41263999 chr1,41263809,41263999,-,MIRc,SINE,MIR,-53,215,10,41263756,41264008 -2 - chr1 41284285 41284407 chr1,41284166,41284407,-,MIR,SINE,MIR,-6,262,9,41284160,41284415 -2 - chr1 41284551 41284674 chr1,41284551,41284674,-,MIRb,SINE,MIR,-117,151,30,41284434,41284703 -6 - chr1 41284695 41284765 chr1,41284695,41284765,+,MIR3,SINE,MIR,91,160,-48,41284605,41284813 +6 + chr1 41375004 41375067 chr1,41374849,41375067,+,MER63A,DNA,hAT-Blackjack,1,209,-1,41374849,41375068 -5 + chr1 41375137 41375252 chr1,41375137,41375439,+,AluJr,SINE,Alu,1,302,-10,41375137,41375449 -2 + chr1 41375525 41375552 chr1,41375471,41375552,+,L1MEg,LINE,L1,1883,1957,-4127,41373589,41379679 -4 + chr1 41535787 41535858 chr1,41535713,41535858,-,MIRb,SINE,MIR,-80,188,47,41535633,41535904 -2 - chr1 42338148 42338320 chr1,42338148,42338320,+,L1MA9,LINE,L1,6093,6270,-42,42332056,42338362 -6 + chr1 42338351 42338376 chr1,42338351,42338395,+,A-rich,Low_complexity,Low_complexity,1,44,0,42338351,42338395 -1 + chr1 42678735 42678804 chr1,42678698,42678804,+,L2a,LINE,L2,3335,3424,-2,42675364,42678806 +1 + chr1 42678840 42678869 chr1,42678840,42678936,-,L2b,LINE,L2,-225,3150,3051,42678615,42681986 -4 - chr1 42681534 42681612 chr1,42681534,42681612,+,MIRb,SINE,MIR,123,200,-68,42681412,42681680 +6 + chr1 42775889 42775921 chr1,42775889,42775921,+,(AAAAAC)n,Simple_repeat,Simple_repeat,1,32,0,42775889,42775921 -6 + chr1 42796587 42796699 chr1,42796587,42796699,-,AluJo,SINE,Alu,-194,118,6,42796393,42796704 -6 - chr1 42834681 42834854 chr1,42834543,42834854,-,AluSq2,SINE,Alu,0,313,1,42834543,42834854 +5 - chr1 42836928 42837098 chr1,42836928,42837098,-,L2a,LINE,L2,-620,2799,2616,42836308,42839713 +5 - chr1 42837670 42837731 chr1,42837547,42837731,+,MIRb,SINE,MIR,2,233,-35,42837546,42837766 -4 + chr1 42841898 42842013 chr1,42841847,42842250,-,MSTD,LTR,ERVL-MaLR,0,396,1,42841847,42842250 +5 - chr1 42844511 42844684 chr1,42844426,42844922,-,MLT2B4,LTR,ERVL,0,556,1,42844426,42844922 +3 - chr1 42959103 42959181 chr1,42959103,42959181,+,MIR3,SINE,MIR,77,153,-55,42959027,42959236 +1 + chr1 42959264 42959368 chr1,42959264,42959368,+,MIR,SINE,MIR,132,237,-25,42959133,42959393 +6 + chr1 42959490 42959577 chr1,42959490,42959595,+,L2c,LINE,L2,3085,3185,-202,42956406,42959797 +4 + chr1 42973974 42974103 chr1,42973961,42974103,-,MIRb,SINE,MIR,-78,190,49,42973883,42974151 -2 - chr1 42974205 42974505 chr1,42974205,42974505,+,AluJb,SINE,Alu,1,294,-18,42974205,42974523 +6 + chr1 42974941 42975052 chr1,42974941,42975052,-,MIRc,SINE,MIR,-39,229,107,42974902,42975158 -6 - chr1 42975378 42975500 chr1,42975378,42975500,+,MIR,SINE,MIR,19,143,-119,42975360,42975619 +6 + chr1 42975518 42975706 chr1,42975518,42975706,+,MIR,SINE,MIR,33,219,-43,42975486,42975749 +6 + chr1 42975734 42975773 chr1,42975734,42975773,+,(ATC)n,Simple_repeat,Simple_repeat,1,39,0,42975734,42975773 +6 + chr1 42975951 42976160 chr1,42975951,42976160,-,LTR49,LTR,ERV1,0,595,391,42975951,42976550 -6 - chr1 42976160 42976428 chr1,42976160,42976462,+,AluSp,SINE,Alu,1,313,0,42976160,42976462 +5 + chr1 42983125 42983231 chr1,42982928,42983231,-,AluSp,SINE,Alu,-16,297,1,42982912,42983231 -2 - chr1 43354684 43354999 chr1,43354640,43354999,-,LTR33,LTR,ERVL,0,515,157,43354640,43355155 +5 - chr1 43357803 43357900 chr1,43357605,43357901,-,AluY,SINE,Alu,-15,296,1,43357590,43357901 +3 - chr1 43456635 43456859 chr1,43456635,43456859,+,L1ME3D,LINE,L1,5838,6065,-177,43450798,43457036 +6 + chr1 43699765 43700022 chr1,43699723,43700022,-,AluY,SINE,Alu,-14,297,7,43699709,43700028 +5 - chr1 43700022 43700063 chr1,43700022,43700127,-,Charlie1a,DNA,hAT-Charlie,-291,1164,1040,43699731,43701166 +2 - chr1 43702097 43702235 chr1,43701786,43702235,-,Charlie1a,DNA,hAT-Charlie,-952,503,1,43700834,43702235 +5 - chr1 43702570 43702642 chr1,43702570,43702642,-,L2b,LINE,L2,-5,3370,3307,43702565,43705948 +6 - chr1 43709392 43709535 chr1,43709383,43709633,-,AluJr,SINE,Alu,-7,305,48,43709376,43709680 +5 - chr1 43720471 43720551 chr1,43720395,43720757,-,MSTD,LTR,ERVL-MaLR,0,396,2,43720395,43720758 +3 - chr1 43727233 43727295 chr1,43726893,43727295,-,L1MC4,LINE,L1,-779,7263,6806,43726114,43734100 +4 - chr1 43944370 43944416 chr1,43944290,43944416,+,L1MEd,LINE,L1,463,582,-6504,43943828,43950920 -5 + chr1 44039907 44039921 chr1,44039476,44039921,-,L1PA6,LINE,L1,-821,5325,4841,44038655,44044761 -2 - chr1 44039928 44040055 chr1,44039928,44040055,+,AluJr4,SINE,Alu,9,133,-179,44039920,44040234 +5 + chr1 44040119 44040273 chr1,44040119,44040425,+,AluSp,SINE,Alu,1,307,-6,44040119,44040431 +5 + chr1 44047992 44048040 chr1,44047992,44048040,+,(TG)n,Simple_repeat,Simple_repeat,1,48,0,44047992,44048040 +6 + chr1 44050950 44051031 chr1,44050927,44051031,+,MER66A,LTR,ERV1,377,478,0,44050551,44051031 +2 + chr1 44051053 44051531 chr1,44051053,44051962,+,MER66-int,LTR,ERV1,13,967,-5709,44051041,44057671 +5 + chr1 44052112 44052186 chr1,44051972,44052202,+,HERV9-int,LTR,ERV1,5487,5707,-2729,44046486,44054931 +3 + chr1 44061132 44061227 chr1,44060717,44061369,+,MER66-int,LTR,ERV1,6022,6676,0,44054696,44061369 +3 + chr1 44076091 44076505 chr1,44076025,44076511,+,LTR16D2,LTR,ERVL,3,569,-3,44076023,44076514 +5 + chr1 44076750 44076822 chr1,44076718,44077034,-,AluJr,SINE,Alu,-6,306,1,44076712,44077034 -5 - chr1 44101560 44101615 chr1,44101056,44101688,-,L1MC4,LINE,L1,0,7882,7296,44101056,44108983 -3 - chr1 44104688 44104907 chr1,44104688,44104907,+,L1ME3B,LINE,L1,5683,5948,-294,44099006,44105201 +6 + chr1 44104909 44104975 chr1,44104909,44105122,+,AluJr,SINE,Alu,87,312,0,44104823,44105122 +5 + chr1 44243881 44243997 chr1,44243881,44244072,+,MIRb,SINE,MIR,19,216,-52,44243863,44244124 -2 + chr1 44759037 44759070 chr1,44758919,44759070,-,MIR,SINE,MIR,-101,161,2,44758818,44759071 +5 - chr1 44775762 44775810 chr1,44775762,44775817,+,G-rich,Low_complexity,Low_complexity,1,55,0,44775762,44775817 -1 + chr1 45694894 45694967 chr1,45694894,45695112,-,AluSx3,SINE,Alu,-21,290,80,45694873,45695191 +2 - chr1 45696762 45696801 chr1,45696499,45696801,+,AluSp,SINE,Alu,2,304,-9,45696498,45696810 -4 + chr1 46047156 46047175 chr1,46047156,46047467,+,AluSx,SINE,Alu,2,312,0,46047155,46047467 +4 + chr1 46048080 46048228 chr1,46048080,46048228,+,L2a,LINE,L2,3268,3415,-11,46044813,46048239 +6 + chr1 46447626 46447707 chr1,46447626,46447707,+,MIRc,SINE,MIR,36,128,-140,46447591,46447847 -6 + chr1 46482210 46482475 chr1,46481958,46482533,+,MLT1F1,LTR,ERVL-MaLR,1,567,-2,46481958,46482535 +5 + chr1 46540930 46540951 chr1,46540848,46540951,+,MIR3,SINE,MIR,95,194,-14,46540754,46540965 +2 + chr1 46559670 46559807 chr1,46559654,46559807,-,AluSx1,SINE,Alu,-22,290,137,46559632,46559943 -2 - chr1 46569090 46569222 chr1,46569090,46569222,-,AluJr4,SINE,Alu,-178,134,1,46568912,46569222 -6 - chr1 46674036 46674174 chr1,46674025,46674174,-,MIRb,SINE,MIR,-64,204,37,46673961,46674210 -1 - chr1 46682181 46682264 chr1,46682072,46682381,-,L2c,LINE,L2,0,3387,3029,46682072,46685409 -3 - chr1 46691964 46692098 chr1,46691964,46692715,-,L1ME1,LINE,L1,-6,6173,5408,46691958,46698122 -5 - chr1 47096653 47096929 chr1,47096626,47096929,-,AluSz,SINE,Alu,-8,304,1,47096618,47096929 +5 - chr1 47096929 47097177 chr1,47096929,47097360,-,L1PA11,LINE,L1,-134,6040,5607,47096795,47102966 +2 - chr1 47177035 47177069 chr1,47177016,47177157,+,L1PA10,LINE,L1,5546,5688,-480,47171471,47177637 -3 + chr1 47178336 47178430 chr1,47178336,47178430,+,MIR3,SINE,MIR,104,201,-7,47178233,47178437 -6 + chr1 47179868 47180021 chr1,47179844,47180021,-,MIRb,SINE,MIR,-68,200,7,47179776,47180027 -2 - chr1 47180027 47180048 chr1,47180027,47180048,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,47180027,47180048 +6 + chr1 47226117 47226210 chr1,47226117,47226210,+,(AGAGAC)n,Simple_repeat,Simple_repeat,1,96,0,47226117,47226210 +6 + chr1 47229391 47229429 chr1,47229391,47229429,+,GA-rich,Low_complexity,Low_complexity,1,38,0,47229391,47229429 +6 + chr1 47230013 47230099 chr1,47230013,47230099,+,GA-rich,Low_complexity,Low_complexity,1,87,0,47230013,47230099 +6 + chr1 47230472 47230499 chr1,47230472,47230499,+,G-rich,Low_complexity,Low_complexity,1,27,0,47230472,47230499 +6 + chr1 47386326 47386356 chr1,47386326,47386792,+,L1PA16,LINE,L1,5680,6165,-1,47380647,47386793 -2 + chr1 47408434 47408477 chr1,47408434,47408505,-,L2c,LINE,L2,-53,3334,3262,47408381,47411766 +1 - chr1 47761132 47761209 chr1,47761116,47761209,-,MIRc,SINE,MIR,-104,164,69,47761012,47761277 +5 - chr1 47819752 47819824 chr1,47819752,47819824,-,L2b,LINE,L2,-6,3369,3296,47819746,47823119 -6 - chr1 47819953 47820237 chr1,47819953,47820240,+,L2a,LINE,L2,3134,3426,0,47816820,47820240 +5 + chr1 48053545 48053665 chr1,48053427,48053665,-,L3,LINE,CR1,-94,4005,3737,48053333,48057401 -1 - chr1 48056650 48056688 chr1,48056638,48056688,+,L2c,LINE,L2,3272,3323,-64,48053367,48056752 +2 + chr1 48066625 48066811 chr1,48066625,48066811,+,MIRc,SINE,MIR,2,203,-65,48066624,48066876 +6 + chr1 48078842 48079018 chr1,48078842,48079018,-,MIR3,SINE,MIR,-21,187,1,48078821,48079018 +6 - chr1 48206208 48206294 chr1,48206208,48206429,-,MIRb,SINE,MIR,-8,260,33,48206200,48206461 -4 - chr1 48206810 48206843 chr1,48206800,48207089,-,L1MA9,LINE,L1,0,6312,6021,48206800,48213109 -5 - chr1 48227888 48227918 chr1,48227795,48227918,-,MIR3,SINE,MIR,-65,203,82,48227730,48227999 +5 - chr1 48228111 48228259 chr1,48228111,48228259,+,MIR,SINE,MIR,33,193,-69,48228079,48228328 -6 + chr1 48228596 48228770 chr1,48228596,48228770,+,MIRb,SINE,MIR,72,261,-7,48228525,48228777 -6 + chr1 48229092 48229217 chr1,48229092,48229217,-,MIR3,SINE,MIR,-65,143,12,48229027,48229228 +6 - chr1 49174812 49174870 chr1,49174583,49174870,+,LTR79,LTR,ERVL,208,518,-9,49174376,49174879 +2 + chr1 49174881 49175082 chr1,49174881,49175367,-,L2a,LINE,L2,-1931,1488,979,49172950,49176345 -4 - chr1 49257411 49257477 chr1,49257178,49257818,-,L1PA3,LINE,L1,-5509,646,4,49251669,49257821 -1 - chr1 49269069 49269285 chr1,49268839,49269321,+,MLT1H,LTR,ERVL-MaLR,1,526,-23,49268839,49269344 +5 + chr1 49423063 49423134 chr1,49422893,49423217,+,MLT1J2,LTR,ERVL-MaLR,21,448,0,49422873,49423217 -3 + chr1 49469869 49470006 chr1,49469869,49470117,+,MIRb,SINE,MIR,4,254,-14,49469866,49470131 -2 + chr1 49471996 49472085 chr1,49471394,49472491,+,L1MDa,LINE,L1,13,1291,-5342,49471382,49477833 -1 + chr1 49994318 49994397 chr1,49994103,49994397,+,L1MC5,LINE,L1,8563,8858,-446,49985541,49994843 +1 + chr1 49994436 49994579 chr1,49994436,49994579,+,AluJo,SINE,Alu,141,282,-30,49994296,49994609 +6 + chr1 49994630 49996218 chr1,49994630,50000000,+,L1PBa,LINE,L1,3,5786,-1076,49994628,50001076 +5 + chr1 50174477 50174507 chr1,50174477,50174507,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,50174477,50174507 -6 + chr1 50437292 50437306 chr1,50437292,50437365,-,Charlie24,DNA,hAT-Charlie,-2,2448,2373,50437290,50439737 +1 - chr1 50461470 50461496 chr1,50461470,50461570,-,L2b,LINE,L2,-26,3349,3259,50461444,50464828 -4 - chr1 50462192 50462251 chr1,50462105,50462251,+,MER68,LTR,ERVL,382,528,-35,50461724,50462286 +2 + chr1 50462264 50462313 chr1,50462264,50462369,-,MIRb,SINE,MIR,-52,216,115,50462212,50462483 -4 - chr1 50469438 50469544 chr1,50469434,50469804,-,L2,LINE,L2,-416,3003,2621,50469018,50472424 -3 - chr1 50470734 50470856 chr1,50470636,50470856,-,MIRb,SINE,MIR,-39,229,5,50470597,50470860 -2 - chr1 50471061 50471124 chr1,50470964,50471124,+,L2c,LINE,L2,3238,3426,0,50467727,50471124 +2 + chr1 51195095 51195239 chr1,51195066,51195239,-,AluSp,SINE,Alu,0,313,141,51195066,51195379 +5 - chr1 51195240 51195516 chr1,51195240,51195516,-,Tigger1,DNA,TcMar-Tigger,-325,2093,1824,51194915,51197339 +6 - chr1 51195516 51195812 chr1,51195516,51195812,+,AluJb,SINE,Alu,1,301,-11,51195516,51195823 -6 + chr1 51195814 51196124 chr1,51195814,51196124,+,AluSx1,SINE,Alu,1,310,-2,51195814,51196126 -6 + chr1 51196124 51196661 chr1,51196124,51196661,-,Tigger1,DNA,TcMar-Tigger,-595,1823,1294,51195529,51197954 +6 - chr1 51196662 51196693 chr1,51196662,51196693,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,51196662,51196693 -6 + chr1 51196693 51196763 chr1,51196693,51196763,-,Tigger1,DNA,TcMar-Tigger,-1095,1323,1252,51195598,51198014 +6 - chr1 51196765 51196907 chr1,51196765,51196907,+,AluJb,SINE,Alu,1,133,-169,51196765,51197076 -6 + chr1 51196909 51197218 chr1,51196909,51197218,+,AluSx1,SINE,Alu,1,305,-7,51196909,51197225 -6 + chr1 51234965 51235096 chr1,51234964,51235097,+,L2b,LINE,L2,3229,3370,-5,51231736,51235102 -1 + chr1 51265033 51265215 chr1,51265033,51265341,+,AluSz,SINE,Alu,1,300,-12,51265033,51265353 -2 + chr1 51265940 51265994 chr1,51265853,51265994,-,AluSz6,SINE,Alu,-12,300,158,51265841,51266151 +4 - chr1 51266018 51266074 chr1,51266018,51266162,-,MIRb,SINE,MIR,-90,178,20,51265928,51266181 +1 - chr1 51331085 51331234 chr1,51331085,51331234,-,MIRc,SINE,MIR,-111,157,5,51330974,51331238 -6 - chr1 51335266 51335324 chr1,51335266,51335581,+,AluSx1,SINE,Alu,1,302,-10,51335266,51335591 +5 + chr1 51461844 51462048 chr1,51461844,51462048,-,MIRb,SINE,MIR,-1,267,53,51461843,51462100 -6 - chr1 51462081 51462135 chr1,51462081,51462388,+,AluSp,SINE,Alu,2,308,-5,51462080,51462393 +4 + chr1 51463154 51463175 chr1,51462902,51463175,-,AluSx4,SINE,Alu,-37,273,1,51462865,51463175 -2 - chr1 51560912 51560967 chr1,51560912,51560967,+,MIRc,SINE,MIR,2,59,-209,51560911,51561176 +5 + chr1 51560967 51561023 chr1,51560967,51561255,+,AluSz,SINE,Alu,2,297,-15,51560966,51561270 +4 + chr1 51795256 51795375 chr1,51795256,51795375,+,MIR3,SINE,MIR,104,226,-4,51795153,51795379 +6 + chr1 51797955 51798069 chr1,51797767,51798069,-,AluJr,SINE,Alu,-9,303,1,51797758,51798069 -2 - chr1 51798883 51799055 chr1,51798883,51799055,+,MIR,SINE,MIR,79,262,0,51798805,51799055 +6 + chr1 51801028 51801103 chr1,51800859,51801103,-,AluJr,SINE,Alu,-30,282,40,51800829,51801142 -1 - chr1 51801189 51801307 chr1,51801189,51801307,-,L1M5,LINE,L1,-1669,4477,4367,51799520,51805673 -5 - chr1 52052407 52052683 chr1,52052312,52052734,+,MLT1G1,LTR,ERVL-MaLR,51,595,0,52052262,52052734 +5 + chr1 52554821 52555054 chr1,52554821,52555054,-,L2b,LINE,L2,-8,3367,3106,52554813,52558159 -6 - chr1 52881216 52881282 chr1,52881099,52881282,+,MIRb,SINE,MIR,51,256,-12,52881049,52881294 -5 + chr1 53115567 53115716 chr1,53115567,53115716,+,MIR3,SINE,MIR,5,154,-76,53115563,53115792 +6 + chr1 53116174 53116232 chr1,53116174,53116469,+,L2b,LINE,L2,3055,3375,0,53113120,53116469 +4 + chr1 53118553 53118609 chr1,53118553,53118715,-,MER33,DNA,hAT-Charlie,-24,300,149,53118529,53118863 -5 - chr1 53213646 53213775 chr1,53213646,53213947,+,AluSz,SINE,Alu,1,306,-6,53213646,53213953 -1 + chr1 53220666 53220698 chr1,53220666,53220698,+,(GGCCGG)n,Simple_repeat,Simple_repeat,1,32,0,53220666,53220698 +6 + chr1 53221350 53221524 chr1,53221350,53221524,+,L1M1,LINE,L1,16,171,-7394,53221335,53228918 +6 + chr1 53221524 53221825 chr1,53221524,53221825,+,AluSx,SINE,Alu,1,301,-11,53221524,53221836 +6 + chr1 53221825 53224253 chr1,53221825,53224521,+,L1M1,LINE,L1,172,3222,-4343,53221654,53228864 +5 + chr1 53238889 53238951 chr1,53238889,53238951,+,MIR1_Amn,SINE,MIR,109,169,-61,53238781,53239012 +6 + chr1 53239209 53239345 chr1,53239209,53239369,+,MER5B,DNA,hAT-Charlie,1,178,0,53239209,53239369 +4 + chr1 53241847 53241935 chr1,53241750,53241935,-,L2-3_Crp,LINE,L2,-1135,961,772,53240615,53242706 -2 - chr1 53242833 53242859 chr1,53242833,53242859,+,(TA)n,Simple_repeat,Simple_repeat,1,26,0,53242833,53242859 -6 + chr1 53243609 53243992 chr1,53243609,53243992,+,L2c,LINE,L2,2939,3383,-4,53240671,53243996 -6 + chr1 53244331 53244375 chr1,53244331,53244375,+,MIR3,SINE,MIR,163,206,-2,53244169,53244377 -6 + chr1 53288202 53288370 chr1,53288202,53288370,+,MIRc,SINE,MIR,67,248,-20,53288136,53288390 +6 + chr1 53291791 53291864 chr1,53291646,53291864,-,MER58A,DNA,hAT-Charlie,0,224,1,53291646,53291864 +5 - chr1 53305278 53305361 chr1,53305176,53305361,+,MIRb,SINE,MIR,57,251,-17,53305120,53305378 +2 + chr1 53305388 53305424 chr1,53305388,53305449,+,L2b,LINE,L2,3300,3364,-11,53302089,53305460 +4 + chr1 53306087 53306162 chr1,53306035,53306162,+,L2b,LINE,L2,3142,3286,-89,53302894,53306251 +2 + chr1 53328346 53328375 chr1,53328346,53328485,-,L2c,LINE,L2,-222,3165,3023,53328124,53331507 -4 - chr1 53336170 53336509 chr1,53336131,53336838,+,MER44C,DNA,TcMar-Tigger,1,733,0,53336131,53336838 +5 + chr1 53348613 53348630 chr1,53348613,53348650,+,G-rich,Low_complexity,Low_complexity,1,38,0,53348613,53348650 -2 + chr1 53348994 53349040 chr1,53348748,53349040,-,LTR33,LTR,ERVL,-115,400,81,53348633,53349120 +4 - chr1 53349088 53349228 chr1,53349088,53349228,+,MIRc,SINE,MIR,7,143,-125,53349082,53349353 -6 + chr1 53366668 53366804 chr1,53366481,53366804,-,AluJr,SINE,Alu,-16,296,1,53366465,53366804 +5 - chr1 53366804 53366994 chr1,53366804,53366994,-,MLT1D,LTR,ERVL-MaLR,-313,192,1,53366491,53366994 +6 - chr1 53367199 53367277 chr1,53367199,53367444,-,LTR16A,LTR,ERVL,0,451,181,53367199,53367624 +2 - chr1 53368006 53368194 chr1,53367866,53368194,+,L2b,LINE,L2,2950,3308,-79,53364917,53368273 -4 + chr1 53368213 53368245 chr1,53368213,53368301,+,MIRc,SINE,MIR,68,155,-113,53368146,53368414 -1 + chr1 54027018 54027207 chr1,54027018,54027207,+,Charlie4a,DNA,hAT-Charlie,39,235,-273,54026980,54027480 -6 + chr1 54027246 54027438 chr1,54027246,54027438,+,Charlie4a,DNA,hAT-Charlie,296,501,-7,54026951,54027445 -6 + chr1 54027490 54027783 chr1,54027490,54027783,+,AluSz6,SINE,Alu,5,295,-17,54027486,54027800 -6 + chr1 54028362 54028499 chr1,54028362,54028894,+,L2b,LINE,L2,2757,3375,0,54025606,54028894 -1 + chr1 54033133 54033259 chr1,54033133,54033259,-,AluJr4,SINE,Alu,-182,130,1,54032951,54033259 +6 - chr1 54033318 54033624 chr1,54033318,54033624,+,AluSz,SINE,Alu,1,305,-7,54033318,54033631 -6 + chr1 54033835 54034140 chr1,54033835,54034140,+,AluSx,SINE,Alu,1,304,-8,54033835,54034148 -6 + chr1 54034143 54034368 chr1,54034143,54034368,+,L1MB8,LINE,L1,5822,6081,-97,54028322,54034465 -6 + chr1 54034491 54034790 chr1,54034491,54034790,+,AluSz,SINE,Alu,1,299,-13,54034491,54034803 -6 + chr1 54104295 54104540 chr1,54103596,54104540,+,ERV3-16A3_I-int,LTR,ERVL,3936,4875,-351,54099661,54104891 +1 + chr1 54104540 54104841 chr1,54104540,54104841,-,AluSz,SINE,Alu,-7,305,1,54104533,54104841 -6 - chr1 54104841 54105131 chr1,54104841,54105131,+,ERV3-16A3_I-int,LTR,ERVL,4876,5158,-68,54099966,54105199 +6 + chr1 54105170 54105569 chr1,54105170,54105569,+,LTR16A,LTR,ERVL,1,437,-14,54105170,54105583 +6 + chr1 54105616 54105631 chr1,54105616,54105631,-,MER58A,DNA,hAT-Charlie,0,224,216,54105616,54105846 -6 - chr1 54105631 54105918 chr1,54105631,54105918,-,AluSc,SINE,Alu,-16,293,1,54105615,54105918 -6 - chr1 54105918 54106082 chr1,54105918,54106125,-,MER58A,DNA,hAT-Charlie,-9,215,7,54105909,54106131 -5 - chr1 54138748 54138862 chr1,54138748,54138862,+,MIR3,SINE,MIR,36,151,-57,54138713,54138919 +6 + chr1 54139013 54139218 chr1,54139013,54139218,+,MLT1J,LTR,ERVL-MaLR,111,309,-203,54138903,54139421 +6 + chr1 54140472 54140635 chr1,54140472,54140635,+,L2b,LINE,L2,2984,3159,-216,54137489,54140851 +6 + chr1 54140723 54141081 chr1,54140723,54141081,-,L2c,LINE,L2,0,3387,2951,54140723,54144031 -6 - chr1 54141633 54141724 chr1,54141633,54141724,-,MIR,SINE,MIR,-77,185,95,54141556,54141818 -6 - chr1 54141727 54141840 chr1,54141727,54141840,-,LTR16C,LTR,ERVL,-6,483,364,54141721,54142203 -6 - chr1 54141867 54141979 chr1,54141867,54141979,-,LTR16C,LTR,ERVL,-190,299,186,54141677,54142164 -6 - chr1 54142099 54142191 chr1,54142099,54142191,-,MIR,SINE,MIR,-171,91,1,54141928,54142191 -6 - chr1 54142284 54142402 chr1,54142284,54142402,+,MIRb,SINE,MIR,2,129,-139,54142283,54142541 +6 + chr1 54142622 54142784 chr1,54142622,54142784,+,MIR3,SINE,MIR,11,189,-19,54142612,54142803 +6 + chr1 54142810 54142962 chr1,54142810,54142962,+,Charlie15b,DNA,hAT-Charlie,30,176,-885,54142781,54143847 +6 + chr1 54236440 54236574 chr1,54236433,54236574,-,FLAM_C,SINE,Alu,0,133,1,54236433,54236574 -1 - chr1 54517204 54517259 chr1,54517185,54517370,+,MIRb,SINE,MIR,67,261,-7,54517119,54517377 -1 + chr1 54621800 54621818 chr1,54621800,54621909,-,L2c,LINE,L2,-887,2532,2416,54620913,54624324 +2 - chr1 54628366 54628438 chr1,54628366,54628539,+,AluJo,SINE,Alu,11,181,-131,54628356,54628670 -1 + chr1 54794738 54794870 chr1,54794672,54794870,-,MIRb,SINE,MIR,-64,204,1,54794608,54794870 -2 - chr1 54887690 54887797 chr1,54887690,54887797,-,MIRb,SINE,MIR,-54,214,100,54887636,54887896 -1 - chr1 54887933 54888001 chr1,54887933,54888026,-,L2a,LINE,L2,-30,3396,3245,54887903,54891270 -5 - chr1 54888500 54888563 chr1,54888143,54888563,+,L2b,LINE,L2,2932,3374,-1,54885212,54888564 +2 + chr1 54888668 54888850 chr1,54888668,54888929,+,MER33,DNA,hAT-Charlie,38,311,-13,54888631,54888942 +5 + chr1 54992140 54992205 chr1,54992140,54992205,+,L2b,LINE,L2,3308,3376,-11,54988833,54992216 -6 + chr1 54992213 54992274 chr1,54992213,54992438,-,MLT1H2,LTR,ERVL-MaLR,0,579,344,54992213,54992781 +1 - chr1 55217861 55217932 chr1,55217693,55217974,-,UCON86,LINE,L2,-322,360,71,55217371,55218044 -1 - chr1 55581177 55581194 chr1,55581177,55581270,-,L2b,LINE,L2,0,3375,3286,55581177,55584555 -4 - chr1 55614921 55614983 chr1,55614806,55614983,+,Arthur1,DNA,hAT-Tip100,3778,3947,0,55611029,55614983 +2 + chr1 55731180 55734486 chr1,55730141,55734486,+,HERVL-int,LTR,ERVL,1312,5652,-2,55728830,55734488 +2 + chr1 55734488 55734929 chr1,55734488,55734929,+,MLT2A1,LTR,ERVL,1,444,0,55734488,55734929 +6 + chr1 55823807 55823901 chr1,55823672,55823930,-,L2c,LINE,L2,-5,3382,3073,55823667,55827002 -1 - chr1 55832264 55832425 chr1,55832185,55832621,+,LTR16C,LTR,ERVL,4,489,0,55832182,55832621 +3 + chr1 55868098 55868185 chr1,55868036,55868185,-,MIRb,SINE,MIR,-21,247,74,55868015,55868258 -2 - chr1 55915609 55915921 chr1,55915560,55915921,-,MLT1H,LTR,ERVL-MaLR,0,549,95,55915560,55916015 +5 - chr1 55945141 55945252 chr1,55945141,55945531,+,L3,LINE,CR1,3606,4075,-24,55941536,55945555 +4 + chr1 55949833 55950084 chr1,55949793,55950084,+,L2,LINE,L2,2183,2495,-924,55947611,55951008 +2 + chr1 56154926 56155084 chr1,56154604,56155084,-,LTR33,LTR,ERVL,0,515,3,56154604,56155086 -2 - chr1 56248420 56249138 chr1,56248420,56249138,+,L1M4,LINE,L1,4385,5131,-1015,56244036,56250153 -6 + chr1 56253653 56253774 chr1,56253555,56253774,+,L2c,LINE,L2,2665,2897,-522,56250891,56254296 -4 + chr1 56253791 56253893 chr1,56253791,56254224,-,MER41E,LTR,ERV1,-145,450,1,56253646,56254224 +2 - chr1 56415248 56415342 chr1,56415237,56415382,-,MIRb,SINE,MIR,-91,177,30,56415146,56415411 -3 - chr1 56415782 56415966 chr1,56415781,56416018,+,MLT1L,LTR,ERVL-MaLR,364,610,0,56415418,56416018 +5 + chr1 56823692 56823757 chr1,56823692,56823757,-,L2b,LINE,L2,-6,3369,3302,56823686,56827058 +6 - chr1 56824146 56824452 chr1,56824146,56824452,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,56824146,56824452 +6 - chr1 56824460 56824597 chr1,56824460,56824597,-,MamRep564,Unknown,Unknown,-188,169,28,56824272,56824624 +6 - chr1 56826565 56826630 chr1,56826273,56826630,+,L2c,LINE,L2,2791,3159,-228,56823483,56826858 -4 + chr1 56969580 56969756 chr1,56969578,56969849,+,MLT1I,LTR,ERVL-MaLR,141,411,0,56969438,56969849 +3 + chr1 56987427 56987564 chr1,56987410,56987700,-,AluSz6,SINE,Alu,-19,293,2,56987391,56987701 -3 - chr1 57386576 57386646 chr1,57386535,57386646,-,MIR3,SINE,MIR,-13,195,86,57386522,57386731 -1 - chr1 57387082 57387299 chr1,57387082,57387299,+,MIRb,SINE,MIR,35,260,-8,57387048,57387307 +6 + chr1 57862507 57863215 chr1,57862507,57863454,+,L1ME1,LINE,L1,5190,6167,-12,57857318,57863466 +1 + chr1 57864422 57864529 chr1,57864365,57864529,-,MIRc,SINE,MIR,-70,198,26,57864295,57864554 -2 - chr1 57864576 57864594 chr1,57864576,57864611,+,MIR,SINE,MIR,77,111,-151,57864500,57864762 +4 + chr1 57864707 57864747 chr1,57864704,57864747,-,FLAM_A,SINE,Alu,-26,116,74,57864678,57864820 -2 - chr1 57864747 57864846 chr1,57864747,57864846,-,AluJb,SINE,Alu,-213,99,1,57864534,57864846 -6 - chr1 57864864 57864908 chr1,57864864,57864908,+,MIRc,SINE,MIR,210,252,-16,57864655,57864924 +6 + chr1 57864947 57865041 chr1,57864947,57865293,-,MLT1J2,LTR,ERVL-MaLR,-17,431,64,57864930,57865356 -5 - chr1 57866302 57866400 chr1,57866289,57866410,+,L2a,LINE,L2,3272,3426,0,57863018,57866410 +3 + chr1 57878545 57878773 chr1,57878545,57879151,-,L1MA5,LINE,L1,-2,6298,5675,57878543,57884825 -5 - chr1 58080042 58080238 chr1,58080042,58080238,+,L3,LINE,CR1,633,849,-3250,58079410,58083488 +6 + chr1 58812864 58812888 chr1,58812864,58812888,+,(TCC)n,Simple_repeat,Simple_repeat,1,24,0,58812864,58812888 -6 + chr1 58813270 58813342 chr1,58813270,58813359,+,MIRc,SINE,MIR,108,198,-70,58813163,58813429 -1 + chr1 58838578 58838688 chr1,58838578,58838708,+,FLAM_A,SINE,Alu,5,134,-8,58838574,58838716 -2 + chr1 58841097 58841136 chr1,58840956,58841136,-,MIRb,SINE,MIR,-22,246,49,58840934,58841184 +4 - chr1 58882873 58883064 chr1,58882873,58883064,-,MIRb,SINE,MIR,-32,236,33,58882841,58883096 +6 - chr1 58883471 58883734 chr1,58883471,58883878,+,L3,LINE,CR1,3462,3879,-220,58880010,58884098 -2 + chr1 58889149 58889208 chr1,58889143,58889237,+,L2b,LINE,L2,2733,2833,-586,58886411,58889823 -3 + chr1 58896257 58896314 chr1,58896196,58896314,-,MIRb,SINE,MIR,-32,236,120,58896164,58896433 -2 - chr1 58896345 58896385 chr1,58896345,58896492,-,MIR3,SINE,MIR,-59,149,6,58896286,58896497 -4 - chr1 58899473 58899594 chr1,58899473,58899676,-,MIRc,SINE,MIR,-32,236,26,58899441,58899701 -5 - chr1 59022984 59023020 chr1,59022753,59023252,+,MER70C,LTR,ERVL,1,531,0,59022753,59023252 +5 + chr1 59032881 59033049 chr1,59032881,59033049,+,L2c,LINE,L2,2702,2876,-543,59030180,59033592 +6 + chr1 59044494 59044614 chr1,59044462,59044777,-,AluJo,SINE,Alu,-6,306,1,59044456,59044777 -5 - chr1 59078053 59078116 chr1,59078053,59078168,-,MIR,SINE,MIR,-29,233,119,59078024,59078286 +1 - chr1 59086403 59086516 chr1,59086285,59086516,+,MIRb,SINE,MIR,3,259,-9,59086283,59086525 +2 + chr1 59086532 59086596 chr1,59086532,59086655,-,MIR3,SINE,MIR,-94,174,50,59086438,59086704 -4 - chr1 59088060 59088195 chr1,59088060,59088280,+,MIRb,SINE,MIR,26,247,-21,59088035,59088301 +5 + chr1 59132015 59132099 chr1,59132015,59132099,-,MIRc,SINE,MIR,-127,141,57,59131888,59132155 +6 - chr1 59132919 59133031 chr1,59132919,59133031,-,MIR3,SINE,MIR,-62,146,30,59132857,59133060 +6 - chr1 59133170 59133330 chr1,59133170,59133331,+,L2c,LINE,L2,2910,3078,-309,59130261,59133640 -2 + chr1 59198183 59198255 chr1,59198131,59198255,-,MIRb,SINE,MIR,-114,154,27,59198017,59198281 +4 - chr1 59203095 59203108 chr1,59202991,59203108,+,MIR,SINE,MIR,31,146,-116,59202961,59203224 -4 + chr1 59203323 59203420 chr1,59203323,59203420,-,OldhAT1,DNA,hAT-Ac,-68,2780,2689,59203255,59206108 +6 - chr1 59203429 59203468 chr1,59203429,59203550,+,MIR3,SINE,MIR,42,171,-37,59203388,59203587 -1 + chr1 59208011 59208056 chr1,59206180,59208056,+,L1PA7,LINE,L1,2,1881,-4618,59206179,59212674 -4 + chr1 59208050 59208121 chr1,59208050,59209856,+,L1PA7,LINE,L1,3846,5663,-798,59204205,59210654 -1 + chr1 59289417 59289640 chr1,59289417,59289853,+,(TG)n,Simple_repeat,Simple_repeat,1,441,0,59289417,59289853 -1 + chr1 59754747 59755102 chr1,59754717,59755102,-,LTR78,LTR,ERV1,-676,628,201,59754041,59755302 +5 - chr1 59755113 59755270 chr1,59755113,59755270,-,LTR78,LTR,ERV1,-1148,156,2,59753965,59755271 +6 - chr1 59755286 59755407 chr1,59755286,59755561,-,L2c,LINE,L2,-1,3386,3117,59755285,59758677 +2 - chr1 59772795 59772866 chr1,59772652,59772866,-,MIR,SINE,MIR,0,262,3,59772652,59772868 -1 - chr1 59772879 59773037 chr1,59772879,59773047,-,MIRb,SINE,MIR,0,268,72,59772879,59773118 -4 - chr1 59774051 59774086 chr1,59773974,59774086,-,LTR78B,LTR,ERV1,-1,1295,1184,59773973,59775269 -2 - chr1 59789086 59789182 chr1,59789086,59789371,-,L2c,LINE,L2,-15,3372,3124,59789071,59792494 +1 - chr1 60114875 60114973 chr1,60114744,60115081,-,L2c,LINE,L2,0,3375,3041,60114744,60118121 -1 - chr1 60149573 60149679 chr1,60149573,60149788,-,MIRb,SINE,MIR,-6,262,34,60149567,60149821 -5 - chr1 60542297 60542411 chr1,60542221,60542611,-,MLT1B,LTR,ERVL-MaLR,0,390,1,60542221,60542611 +3 - chr1 60573402 60573413 chr1,60573402,60573518,+,MIRb,SINE,MIR,5,121,-147,60573398,60573665 -2 + chr1 60588037 60588162 chr1,60588037,60588408,+,L3,LINE,CR1,2647,3013,-1086,60585391,60589494 -3 + chr1 60595538 60595968 chr1,60595461,60595968,-,MLT1D,LTR,ERVL-MaLR,0,505,6,60595461,60595973 +4 - chr1 60596027 60596373 chr1,60596027,60596612,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,60596027,60596612 +2 - chr1 60600127 60600228 chr1,60600049,60600228,-,MLT1B,LTR,ERVL-MaLR,0,390,210,60600049,60600437 +4 - chr1 60600228 60600250 chr1,60600228,60600662,-,MSTA,LTR,ERVL-MaLR,-1,427,1,60600227,60600662 +2 - chr1 60640012 60640126 chr1,60640012,60646037,+,L1PA2,LINE,L1,125,6155,0,60639888,60646037 -1 + chr1 60640272 60640491 chr1,60640012,60646037,+,L1PA2,LINE,L1,125,6155,0,60639888,60646037 -1 + chr1 60659851 60660157 chr1,60659851,60660157,+,AluSx3,SINE,Alu,1,306,-5,60659851,60660162 -6 + chr1 60660334 60660494 chr1,60660334,60660494,-,L2,LINE,L2,-508,2911,2745,60659826,60663238 +6 - chr1 60660815 60660964 chr1,60660815,60660964,-,MIRb,SINE,MIR,-110,158,5,60660705,60660968 +6 - chr1 60660977 60661119 chr1,60660977,60661119,-,MIRb,SINE,MIR,-21,247,88,60660956,60661206 +6 - chr1 60661348 60661470 chr1,60661348,60661471,+,MLT1M,LTR,ERVL-MaLR,17,153,-519,60661332,60661990 -2 + chr1 60940239 60940584 chr1,60940197,60940584,-,MLT1C,LTR,ERVL-MaLR,0,467,66,60940197,60940649 +5 - chr1 60940584 60940631 chr1,60940584,60940989,-,MER51B,LTR,ERV1,0,377,1,60940584,60940989 +2 - chr1 60954054 60954152 chr1,60953945,60954152,+,MIRb,SINE,MIR,19,254,-14,60953927,60954166 -5 + chr1 61251343 61251369 chr1,61251343,61251472,+,MIRb,SINE,MIR,116,260,-8,61251228,61251480 -2 + chr1 61742353 61742415 chr1,61742353,61742415,+,(CCCGCCC)n,Simple_repeat,Simple_repeat,1,62,0,61742353,61742415 -6 + chr1 62607766 62607807 chr1,62607596,62607807,-,Charlie16a,DNA,hAT-Charlie,-2,340,153,62607594,62607959 -1 - chr1 62607807 62608089 chr1,62607807,62608089,+,AluJb,SINE,Alu,9,290,-22,62607799,62608111 +6 + chr1 62608089 62608228 chr1,62608089,62608228,-,Charlie16a,DNA,hAT-Charlie,-190,152,5,62607899,62608232 -6 - chr1 62608238 62608478 chr1,62608238,62608478,+,L2c,LINE,L2,2872,3148,-239,62605367,62608717 +6 + chr1 62608880 62608919 chr1,62608880,62608919,-,L2c,LINE,L2,-4,3383,3344,62608876,62612262 -6 - chr1 62609434 62609568 chr1,62609434,62609568,+,MIRc,SINE,MIR,120,252,-16,62609315,62609584 +6 + chr1 62709638 62709749 chr1,62709619,62709749,-,FLAM_A,SINE,Alu,-10,132,1,62709609,62709749 -2 - chr1 62710122 62710277 chr1,62710122,62710277,+,MIRb,SINE,MIR,88,234,-34,62710035,62710311 +6 + chr1 62896009 62896109 chr1,62895964,62896260,-,AluJo,SINE,Alu,-10,302,2,62895954,62896261 -1 - chr1 62901349 62901570 chr1,62901349,62901570,+,MIR3,SINE,MIR,16,250,-18,62901334,62901588 +6 + chr1 63025404 63025644 chr1,63025187,63025644,+,L1MEi,LINE,L1,1259,1785,-427,63023929,63026071 +2 + chr1 63025644 63025658 chr1,63025644,63025920,-,AluSz,SINE,Alu,-36,276,1,63025608,63025920 -5 - chr1 63078081 63078105 chr1,63077826,63078216,+,MLT1I,LTR,ERVL-MaLR,1,411,0,63077826,63078216 -5 + chr1 63139250 63139416 chr1,63139106,63139416,-,AluSx3,SINE,Alu,-2,309,1,63139104,63139416 -1 - chr1 63159057 63159203 chr1,63159057,63159292,+,CR1_Mam,LINE,CR1,712,948,-1256,63158346,63160548 +5 + chr1 63159083 63159270 chr1,63159057,63159292,+,CR1_Mam,LINE,CR1,712,948,-1256,63158346,63160548 -5 + chr1 63160161 63160257 chr1,63160130,63160257,-,MER112,DNA,hAT-Charlie,-94,167,15,63160036,63160271 +4 - chr1 63161404 63161565 chr1,63161395,63161615,+,L2c,LINE,L2,3153,3387,0,63158243,63161615 -3 + chr1 63189989 63190004 chr1,63189935,63190004,-,MER91C,DNA,hAT-Tip100,-32,108,36,63189903,63190039 +5 - chr1 63190009 63190104 chr1,63190009,63190104,-,MER5A,DNA,hAT-Charlie,-93,96,1,63189916,63190104 +6 - chr1 63190311 63190362 chr1,63190311,63190362,-,MIRb,SINE,MIR,-56,212,161,63190255,63190522 +6 - chr1 63249971 63250255 chr1,63249971,63250255,+,MER8,DNA,TcMar-Tigger,1,238,-1,63249971,63250256 +6 + chr1 63250319 63250476 chr1,63250319,63250619,-,AluSp,SINE,Alu,0,313,1,63250319,63250619 -4 - chr1 63251470 63251491 chr1,63251181,63251491,-,AluJr,SINE,Alu,-25,287,1,63251156,63251491 -2 - chr1 63257022 63257126 chr1,63256886,63257126,+,UCON8,DNA,DNA,666,906,-209,63256221,63257335 -5 + chr1 63315949 63316087 chr1,63315806,63316111,+,AluJr,SINE,Alu,1,299,-13,63315806,63316124 -1 + chr1 63547243 63547556 chr1,63547243,63547556,-,L2a,LINE,L2,0,3426,3110,63547243,63550665 -6 - chr1 63547557 63548048 chr1,63547557,63548048,-,MLT1H,LTR,ERVL-MaLR,0,549,16,63547557,63548063 -6 - chr1 63548099 63548332 chr1,63548099,63548332,-,L2a,LINE,L2,-274,3101,2859,63547825,63551190 -6 - chr1 63548376 63548602 chr1,63548376,63548602,-,L1MCc,LINE,L1,-4901,2136,1979,63543475,63550580 -6 - chr1 63548593 63548811 chr1,63548593,63548811,-,L1MCc,LINE,L1,-6150,273,52,63542443,63548862 -6 - chr1 63548822 63548923 chr1,63548822,63548923,-,L2a,LINE,L2,-564,2855,2752,63548258,63551674 -6 - chr1 63549854 63549895 chr1,63549854,63549895,+,(TTATATT)n,Simple_repeat,Simple_repeat,1,42,0,63549854,63549895 +6 + chr1 63550127 63550180 chr1,63550127,63550180,+,(TAATTTG)n,Simple_repeat,Simple_repeat,1,54,0,63550127,63550180 +6 + chr1 64094558 64094607 chr1,64094558,64094607,+,(TGTTT)n,Simple_repeat,Simple_repeat,1,50,0,64094558,64094607 -6 + chr1 64094607 64094889 chr1,64094607,64094889,-,AluSz6,SINE,Alu,-30,282,1,64094577,64094889 +6 - chr1 64105322 64106840 chr1,64104484,64106840,-,L1PA8A,LINE,L1,0,6131,3768,64104484,64110607 +5 - chr1 64106932 64107039 chr1,64106932,64107102,+,MIRb,SINE,MIR,41,207,-61,64106892,64107163 -2 + chr1 64108320 64108393 chr1,64108114,64108426,+,AluSx,SINE,Alu,1,312,0,64108114,64108426 -3 + chr1 64110683 64110726 chr1,64110683,64110726,-,MIRb,SINE,MIR,-115,153,110,64110568,64110835 +6 - chr1 64171209 64171297 chr1,64171135,64171478,-,THE1B,LTR,ERVL-MaLR,-2,362,1,64171133,64171478 +1 - chr1 64972506 64972802 chr1,64972506,64972802,+,AluJb,SINE,Alu,1,296,-16,64972506,64972818 -6 + chr1 64972838 64973112 chr1,64972838,64973146,+,AluJr4,SINE,Alu,1,311,-1,64972838,64973147 -2 + chr1 64974575 64974715 chr1,64974574,64974906,-,LTR16B1,LTR,ERVL,-4,476,194,64974570,64975099 +3 - chr1 64979577 64979593 chr1,64979545,64979593,-,L2a,LINE,L2,-8,3418,3370,64979537,64982962 +5 - chr1 64987263 64987324 chr1,64987123,64987324,+,L2c,LINE,L2,3140,3339,-48,64983984,64987372 -4 + chr1 64987344 64987384 chr1,64987344,64987384,+,(TGGA)n,Simple_repeat,Simple_repeat,1,42,0,64987344,64987384 -6 + chr1 64989435 64989494 chr1,64989380,64990025,+,L1MB4,LINE,L1,177,979,-6641,64989204,64996666 -3 + chr1 64991298 64991508 chr1,64991220,64991508,-,MLT1B,LTR,ERVL-MaLR,0,390,99,64991220,64991606 +1 - chr1 64991562 64992098 chr1,64991562,64992098,+,L1MB4,LINE,L1,4689,5256,-1491,64986874,64993589 -6 + chr1 64992098 64992399 chr1,64992098,64992399,+,AluSx,SINE,Alu,1,302,-10,64992098,64992409 -6 + chr1 64992399 64992488 chr1,64992399,64992488,+,L1MB4,LINE,L1,5257,5339,-1408,64987143,64993896 -6 + chr1 64992496 64992607 chr1,64992496,64992607,-,Tigger11a,DNA,TcMar-Tigger,-237,498,390,64992259,64992996 +6 - chr1 64992607 64992917 chr1,64992607,64992917,+,AluY,SINE,Alu,1,302,-9,64992607,64992926 -6 + chr1 64992917 64993203 chr1,64992917,64993203,-,Tigger11a,DNA,TcMar-Tigger,-346,389,83,64992571,64993285 +5 - chr1 64993243 64993466 chr1,64993243,64993466,+,MIRb,SINE,MIR,11,266,-2,64993233,64993468 -6 + chr1 65002360 65002476 chr1,65002360,65002589,+,MIRb,SINE,MIR,8,251,-17,65002353,65002606 -1 + chr1 65003580 65003706 chr1,65003580,65003706,-,MIR3,SINE,MIR,-51,157,25,65003529,65003730 +6 - chr1 65003936 65004087 chr1,65003936,65004240,-,AluSx,SINE,Alu,-7,305,1,65003929,65004240 +1 - chr1 65066725 65066781 chr1,65066725,65066781,+,(TCC)n,Simple_repeat,Simple_repeat,1,56,0,65066725,65066781 -6 + chr1 65279553 65279605 chr1,65279553,65279605,+,(ATACAC)n,Simple_repeat,Simple_repeat,1,55,0,65279553,65279605 -6 + chr1 65279674 65279820 chr1,65279674,65279820,+,L2b,LINE,L2,3047,3198,-189,65276628,65280009 -6 + chr1 66046234 66046261 chr1,66046234,66046397,-,Arthur1B,DNA,hAT-Tip100,0,1225,1026,66046234,66047422 +2 - chr1 66665864 66666826 chr1,66664985,66666826,-,L1PA6,LINE,L1,-12,6142,4299,66664973,66671124 +5 - chr1 66828079 66828334 chr1,66828079,66828334,+,L3,LINE,CR1,3774,4024,-75,66824306,66828409 +6 + chr1 66828349 66828558 chr1,66828349,66828847,-,L1M5,LINE,L1,-653,5590,5031,66827696,66833877 -5 - chr1 67121605 67121765 chr1,67121189,67121765,-,MER63D,DNA,hAT-Blackjack,-464,597,1,67120725,67121765 +5 - chr1 67122048 67122334 chr1,67122048,67122334,-,AluSq2,SINE,Alu,-25,288,3,67122023,67122336 +6 - chr1 67122425 67122840 chr1,67122425,67122840,-,L1M5,LINE,L1,-2452,3694,3241,67119973,67126080 +6 - chr1 67122922 67123232 chr1,67122922,67123232,+,AluSx,SINE,Alu,1,309,-3,67122922,67123235 -6 + chr1 67123718 67123802 chr1,67123718,67123802,-,LTR40b,LTR,ERVL,0,462,379,67123718,67124180 +6 - chr1 67123812 67123956 chr1,67123812,67123999,+,L2,LINE,L2,2406,2569,-850,67121407,67124849 -1 + chr1 67529630 67529749 chr1,67529602,67529907,-,AluSq10,SINE,Alu,-8,305,1,67529594,67529907 -1 - chr1 67532106 67532329 chr1,67531926,67532376,+,MLT1D,LTR,ERVL-MaLR,1,505,0,67531926,67532376 +5 + chr1 67955405 67955742 chr1,67955124,67955742,+,L2,LINE,L2,1088,1721,-1698,67954037,67957440 +1 + chr1 68024519 68024570 chr1,68024516,68024570,-,MIR3,SINE,MIR,-116,92,37,68024400,68024606 -2 - chr1 68026574 68026762 chr1,68026298,68026808,+,MLT1J,LTR,ERVL-MaLR,1,497,-15,68026298,68026823 +5 + chr1 68034647 68034727 chr1,68034371,68034727,-,THE1A,LTR,ERVL-MaLR,0,355,1,68034371,68034727 -2 - chr1 68034727 68034763 chr1,68034727,68035049,-,Tigger2,DNA,TcMar-Tigger,-2376,342,1,68032351,68035049 -4 - chr1 68071800 68071873 chr1,68070705,68072860,-,L1MC3,LINE,L1,-2240,4324,2016,68068465,68074875 -3 - chr1 68098643 68098836 chr1,68098553,68099050,-,MER20B,DNA,hAT-Charlie,-261,522,6,68098292,68099055 -3 - chr1 68099729 68099781 chr1,68099477,68099781,-,MER2,DNA,TcMar-Tigger,-1,344,2,68099476,68099782 -2 - chr1 68100698 68100774 chr1,68100683,68100871,+,MER49,LTR,ERV1,177,363,-560,68100507,68101431 +3 + chr1 68121172 68121241 chr1,68121172,68121329,+,L3,LINE,CR1,3584,3751,-348,68117589,68121677 +4 + chr1 68138297 68138332 chr1,68138262,68138332,+,L2a,LINE,L2,3238,3311,-76,68135025,68138408 +2 + chr1 68202754 68202870 chr1,68202754,68202870,+,AmnSINE1,SINE,5S-Deu-L2,12,138,-437,68202743,68203307 +6 + chr1 68482944 68483019 chr1,68482944,68483019,+,(ATAGT)n,Simple_repeat,Simple_repeat,1,79,0,68482944,68483019 +6 + chr1 68483226 68483539 chr1,68483226,68483814,+,MER21C,LTR,ERVL,7,716,-222,68483220,68484036 +5 + chr1 68529325 68529385 chr1,68529236,68529385,+,MIRb,SINE,MIR,54,201,-67,68529183,68529452 +2 + chr1 68529389 68529479 chr1,68529389,68529611,-,MIR,SINE,MIR,-1,261,6,68529388,68529616 -4 - chr1 68537632 68537704 chr1,68537492,68537704,-,LTR78B,LTR,ERV1,-790,506,284,68536702,68537987 -2 - chr1 68538074 68538210 chr1,68538074,68538210,+,L2a,LINE,L2,3289,3425,-1,68534786,68538211 +6 + chr1 69055942 69056047 chr1,69055942,69056181,-,MLT1K,LTR,ERVL-MaLR,-350,245,3,69055592,69056183 -4 - chr1 69085180 69085218 chr1,69084708,69085218,+,MER34B,LTR,ERV1,1,543,-22,69084708,69085240 +2 + chr1 69088515 69088562 chr1,69088508,69088825,+,MER34B-int,LTR,ERV1,124,362,-4994,69088385,69093819 +3 + chr1 69243372 69243385 chr1,69243239,69243385,+,L1PA6,LINE,L1,5825,5976,-178,69237415,69243563 -5 + chr1 69249215 69249291 chr1,69249209,69249291,+,MIRc,SINE,MIR,132,214,-54,69249078,69249345 -4 + chr1 69249383 69249423 chr1,69249383,69249542,-,LTR79,LTR,ERVL,-8,519,351,69249375,69249892 +1 - chr1 69435003 69435325 chr1,69434873,69435325,-,LTR33B,LTR,ERVL,-18,485,42,69434855,69435366 -2 - chr1 70014062 70014144 chr1,70014062,70014242,+,CR1-3_Croc,LINE,CR1,1824,2001,-1604,70012239,70015846 -2 + chr1 70020840 70020911 chr1,70020840,70020911,+,(TTCT)n,Simple_repeat,Simple_repeat,1,75,0,70020840,70020911 -6 + chr1 70021050 70021195 chr1,70021050,70021195,+,OldhAT1,DNA,hAT-Ac,2672,2820,-28,70018379,70021223 -6 + chr1 70031132 70031222 chr1,70030960,70031268,+,L2b,LINE,L2,3069,3375,0,70027892,70031268 -1 + chr1 70218589 70218614 chr1,70218521,70218614,-,L1ME3Cz,LINE,L1,-7,990,896,70218514,70219509 +5 - chr1 70218643 70218720 chr1,70218643,70218720,+,L2c,LINE,L2,3308,3371,-16,70215336,70218736 -6 + chr1 70218685 70218729 chr1,70218685,70218729,+,MIR,SINE,MIR,220,260,-2,70218466,70218731 -6 + chr1 70220823 70220857 chr1,70220565,70220857,+,AluSx1,SINE,Alu,1,292,-20,70220565,70220877 -4 + chr1 70359562 70359780 chr1,70359356,70359780,+,Charlie4a,DNA,hAT-Charlie,85,507,-1,70359272,70359781 -5 + chr1 70359919 70359995 chr1,70359919,70360044,+,L2c,LINE,L2,3264,3383,-4,70356656,70360048 -2 + chr1 70360297 70360327 chr1,70360203,70360327,-,MLT1L,LTR,ERVL-MaLR,0,610,489,70360203,70360815 +4 - chr1 70445071 70445209 chr1,70444906,70445209,-,AluSx1,SINE,Alu,-16,296,1,70444890,70445209 -1 - chr1 70445242 70445364 chr1,70445242,70445364,+,MIRb,SINE,MIR,50,172,-96,70445193,70445460 +6 + chr1 70706453 70706531 chr1,70706304,70707041,-,LTR1B0,LTR,ERV1,0,742,1,70706304,70707041 -1 - chr1 70707828 70707915 chr1,70707828,70707915,+,MIR3,SINE,MIR,30,116,-92,70707799,70708007 +6 + chr1 70707936 70707981 chr1,70707936,70708175,-,MIR,SINE,MIR,-8,254,2,70707928,70708176 -4 - chr1 70708721 70708741 chr1,70708681,70708741,-,L1ME4b,LINE,L1,-123,769,710,70708558,70709450 -2 - chr1 70712057 70712131 chr1,70710619,70712242,+,Tigger2,DNA,TcMar-Tigger,911,2548,-170,70709709,70712412 +3 + chr1 70715946 70716276 chr1,70715946,70716282,-,AluJr,SINE,Alu,-2,310,1,70715944,70716282 +2 - chr1 70785186 70785219 chr1,70784904,70785219,+,L1MC,LINE,L1,3554,3906,-2240,70781351,70787459 +2 + chr1 70785903 70786099 chr1,70785903,70786099,+,MIRb,SINE,MIR,39,251,-17,70785865,70786116 +6 + chr1 70947379 70947475 chr1,70947197,70947555,+,THE1A,LTR,ERVL-MaLR,1,355,0,70947197,70947555 +1 + chr1 70950735 70950793 chr1,70950701,70951014,-,AluSx1,SINE,Alu,0,312,1,70950701,70951014 -3 - chr1 70950901 70951014 chr1,70950701,70951014,-,AluSx1,SINE,Alu,0,312,1,70950701,70951014 -2 - chr1 70951014 70951260 chr1,70951014,70951260,-,Tigger8,DNA,TcMar-Tigger,-202,465,221,70950812,70951480 -6 - chr1 71005883 71006167 chr1,71005883,71006167,-,L1MA5A,LINE,L1,-2,6295,6011,71005881,71012177 +6 - chr1 71048855 71048908 chr1,71048764,71048908,-,MIRb,SINE,MIR,-40,228,87,71048724,71048994 -1 - chr1 71058453 71058583 chr1,71058453,71058583,+,AluJr,SINE,Alu,2,133,-179,71058452,71058762 +6 + chr1 71093130 71093251 chr1,71093113,71093407,-,AluSq2,SINE,Alu,-18,295,1,71093095,71093407 -1 - chr1 71184347 71184459 chr1,71184157,71184459,-,MER33,DNA,hAT-Charlie,0,324,2,71184157,71184460 -2 - chr1 71184496 71184571 chr1,71184496,71185026,+,MER1A,DNA,hAT-Charlie,1,527,-2,71184496,71185028 +4 + chr1 71203018 71203093 chr1,71202710,71203153,-,LTR16C,LTR,ERVL,0,489,1,71202710,71203153 -3 - chr1 71203812 71203920 chr1,71203705,71203964,+,LTR90B,LTR,LTR,157,413,-383,71203549,71204347 +3 + chr1 71237558 71237631 chr1,71237558,71237631,+,(ATTATTT)n,Simple_repeat,Simple_repeat,1,75,0,71237558,71237631 +6 + chr1 71237709 71237723 chr1,71237709,71237849,-,L1MC5,LINE,L1,-1176,8128,8004,71236533,71245852 -5 - chr1 71250999 71251058 chr1,71249129,71251127,+,Arthur1,DNA,hAT-Tip100,1141,3259,-688,71247989,71251815 +1 + chr1 71251662 71251716 chr1,71251148,71251716,+,MER34C_,LTR,ERV1,37,585,0,71251112,71251716 +2 + chr1 71251720 71251928 chr1,71251720,71251928,+,Arthur1,DNA,hAT-Tip100,3292,3514,-433,71248429,71252361 +6 + chr1 71252003 71252119 chr1,71252003,71252193,+,Arthur1,DNA,hAT-Tip100,3714,3923,-24,71248290,71252217 +5 + chr1 71267905 71268030 chr1,71267645,71268030,-,MLT1K,LTR,ERVL-MaLR,-2,593,199,71267643,71268228 -2 - chr1 71268193 71268230 chr1,71268193,71268297,+,(TATA)n,Simple_repeat,Simple_repeat,1,108,0,71268193,71268297 +5 + chr1 71365044 71365199 chr1,71365044,71365242,+,MIR,SINE,MIR,7,247,-15,71365038,71365257 +4 + chr1 71368055 71368088 chr1,71367386,71368192,-,L1MC1,LINE,L1,-6,6327,5509,71367380,71373700 -3 - chr1 71402150 71402319 chr1,71402150,71402319,+,MIRc,SINE,MIR,70,237,-31,71402081,71402350 +6 + chr1 71407637 71407871 chr1,71407637,71407899,+,MIRb,SINE,MIR,4,268,0,71407634,71407899 +5 + chr1 71463331 71463525 chr1,71463312,71463578,+,MLT1I,LTR,ERVL-MaLR,33,322,-89,71463280,71463667 +5 + chr1 71472582 71472607 chr1,71472376,71472607,-,Plat_L3,LINE,CR1,-1129,2457,2231,71471247,71474837 -2 - chr1 71476861 71476967 chr1,71476374,71476969,+,MER77B,LTR,ERVL,2,687,-251,71476373,71477220 +3 + chr1 71484786 71484836 chr1,71484761,71484907,-,MIR3,SINE,MIR,-49,159,1,71484712,71484907 -1 - chr1 71486747 71486806 chr1,71486747,71486806,+,MIRb,SINE,MIR,198,257,-11,71486550,71486817 +6 + chr1 71486807 71486841 chr1,71486807,71486841,+,(TAATAC)n,Simple_repeat,Simple_repeat,1,34,0,71486807,71486841 +6 + chr1 71487991 71488113 chr1,71487953,71488113,+,LTR67B,LTR,ERVL,36,194,-426,71487918,71488539 +2 + chr1 71573434 71573558 chr1,71573268,71573570,+,MamRep605,LTR?,LTR?,300,610,-239,71572969,71573809 +5 + chr1 71794232 71794536 chr1,71794186,71795223,+,L1ME3Cz,LINE,L1,1,402,-595,71794186,71795818 -5 + chr1 72749166 72749227 chr1,72749101,72749227,-,MLT1J,LTR,ERVL-MaLR,-318,194,76,72748783,72749302 +4 - chr1 72765031 72765080 chr1,72763753,72765386,+,L1M4a2,LINE,L1,556,2187,-469,72763198,72765855 +1 + chr1 72775272 72775323 chr1,72774736,72775323,-,L2a,LINE,L2,0,3426,2815,72774736,72778137 -2 - chr1 72780107 72780231 chr1,72780045,72780231,+,L2a,LINE,L2,3249,3426,0,72776797,72780231 +2 + chr1 72850750 72850800 chr1,72850509,72850875,+,MLT1A0,LTR,ERVL-MaLR,1,361,-4,72850509,72850879 -3 + chr1 72898768 72898883 chr1,72898768,72900480,+,L1PA2,LINE,L1,124,1837,-4318,72898645,72904798 -1 + chr1 72899029 72899140 chr1,72898768,72900480,+,L1PA2,LINE,L1,124,1837,-4318,72898645,72904798 -1 + chr1 72979014 72979240 chr1,72978942,72979240,-,AluSx,SINE,Alu,-13,299,2,72978929,72979241 +5 - chr1 73306170 73306274 chr1,73306074,73306568,-,LTR53,LTR,ERVL,-22,497,7,73306052,73306574 -1 - chr1 73307346 73307525 chr1,73307346,73307525,+,LTR67B,LTR,ERVL,408,603,-17,73306939,73307542 +6 + chr1 73310853 73310990 chr1,73310700,73311247,+,LTR38,LTR,ERV1,3,555,-1,73310698,73311248 +3 + chr1 73319468 73319661 chr1,73318967,73320128,-,L1MB8,LINE,L1,-15,6163,4967,73318952,73325094 -5 - chr1 73335604 73336285 chr1,73335604,73336285,+,L1M4,LINE,L1,4853,5575,-604,73330752,73336889 +6 + chr1 73336285 73336527 chr1,73336285,73336527,+,L1ME3A,LINE,L1,5075,5342,-804,73331211,73337331 +6 + chr1 73336566 73336781 chr1,73336566,73336781,+,L1ME3A,LINE,L1,5404,5625,-554,73331163,73337335 +6 + chr1 73336796 73337045 chr1,73336796,73337045,+,AluY,SINE,Alu,1,232,-79,73336796,73337124 +6 + chr1 73337046 73337496 chr1,73337046,73337496,+,MLT1E1A,LTR,ERVL-MaLR,199,680,0,73336848,73337496 +6 + chr1 73337498 73337714 chr1,73337498,73337714,+,L1ME3A,LINE,L1,5965,6173,0,73331534,73337714 +6 + chr1 73338774 73338877 chr1,73338774,73339763,-,L1MA7,LINE,L1,-2,6289,5274,73338772,73345036 -5 - chr1 73709144 73709581 chr1,73709097,73709653,+,LTR73,LTR,ERV1,28,558,-14,73709070,73709667 +5 + chr1 73715202 73715214 chr1,73715202,73715764,-,L1PA7,LINE,L1,-7,6147,5584,73715195,73721347 -5 - chr1 74341579 74341963 chr1,74341572,74341963,-,MLT1N2,LTR,ERVL-MaLR,-14,548,158,74341558,74342120 +5 - chr1 74341973 74341987 chr1,74341973,74342049,-,MER94,DNA,hAT-Blackjack,-23,111,35,74341950,74342083 +2 - chr1 74366583 74366726 chr1,74366506,74366771,-,MLT1J2,LTR,ERVL-MaLR,-227,285,7,74366279,74366777 +3 - chr1 74378769 74378802 chr1,74378769,74378852,-,MLT1J2,LTR,ERVL-MaLR,-365,83,1,74378404,74378852 +1 - chr1 74468255 74468308 chr1,74468255,74468308,+,A-rich,Low_complexity,Low_complexity,1,56,0,74468255,74468308 +6 + chr1 74615240 74615296 chr1,74615240,74615363,+,MIRc,SINE,MIR,11,151,-117,74615230,74615480 +4 + chr1 74623505 74623638 chr1,74623505,74623638,-,MER94,DNA,hAT-Blackjack,0,134,1,74623505,74623638 -6 - chr1 74623640 74623863 chr1,74623640,74623863,+,L2c,LINE,L2,2735,2957,-462,74620906,74624325 +6 + chr1 74624632 74624756 chr1,74624632,74624756,+,MER74A,LTR,ERVL,324,446,-112,74624309,74624868 +6 + chr1 74624777 74625026 chr1,74624777,74625026,-,AluJr,SINE,Alu,-31,281,4,74624746,74625029 -6 - chr1 74625030 74625110 chr1,74625030,74625110,+,MLT2B4,LTR,ERVL,1,86,-470,74625030,74625580 +6 + chr1 74625119 74625240 chr1,74625119,74625240,+,MER74A,LTR,ERVL,440,558,0,74624680,74625240 +6 + chr1 74625389 74625698 chr1,74625389,74625698,+,L2c,LINE,L2,3049,3376,-50,74622341,74625748 +6 + chr1 74625882 74626098 chr1,74625882,74626190,+,MER33,DNA,hAT-Charlie,1,324,0,74625882,74626190 +5 + chr1 74963314 74963367 chr1,74963079,74963450,-,MER57B2,LTR,ERV1,0,403,7,74963079,74963456 -1 - chr1 75123625 75123653 chr1,75123625,75123653,+,(TG)n,Simple_repeat,Simple_repeat,1,28,0,75123625,75123653 -6 + chr1 75123652 75123674 chr1,75123652,75123674,+,(GA)n,Simple_repeat,Simple_repeat,1,22,0,75123652,75123674 -6 + chr1 75127849 75127948 chr1,75127849,75127948,-,L2a,LINE,L2,-5,3421,3312,75127844,75131259 +6 - chr1 75710003 75710271 chr1,75709818,75710271,+,L1ME1,LINE,L1,5684,6168,-11,75704135,75710282 -5 + chr1 75710273 75710560 chr1,75710273,75710593,+,AluJb,SINE,Alu,1,312,0,75710273,75710593 -2 + chr1 76011324 76011372 chr1,76011247,76011372,-,Charlie1b,DNA,hAT-Charlie,-397,126,1,76010850,76011372 -1 - chr1 76041798 76041843 chr1,76041798,76041843,+,A-rich,Low_complexity,Low_complexity,1,46,0,76041798,76041843 +6 + chr1 76066065 76066110 chr1,76066065,76066110,+,(GAA)n,Simple_repeat,Simple_repeat,1,46,0,76066065,76066110 +6 + chr1 77068736 77068775 chr1,77068717,77068775,-,MIRc,SINE,MIR,-113,155,97,77068604,77068871 -2 - chr1 77068814 77068843 chr1,77068814,77069033,-,MIR,SINE,MIR,-32,230,10,77068782,77069042 -4 - chr1 77346046 77346205 chr1,77345815,77346205,-,Tigger2,DNA,TcMar-Tigger,0,2718,2328,77345815,77348532 +5 - chr1 77349430 77349509 chr1,77349318,77349509,-,MIR,SINE,MIR,-54,208,6,77349264,77349514 +4 - chr1 77881618 77881898 chr1,77881618,77881926,+,AluSx3,SINE,Alu,1,306,-5,77881618,77881931 -2 + chr1 77882743 77882973 chr1,77882713,77883016,-,AluJr,SINE,Alu,0,312,3,77882713,77883018 +5 - chr1 77886108 77886123 chr1,77886108,77886384,+,AluSz,SINE,Alu,1,282,-30,77886108,77886414 -1 + chr1 77887309 77887521 chr1,77887222,77887521,-,AluSz6,SINE,Alu,-14,298,1,77887208,77887521 +4 - chr1 77887912 77888010 chr1,77887912,77888010,+,(TTC)n,Simple_repeat,Simple_repeat,1,98,0,77887912,77888010 -6 + chr1 77888598 77888626 chr1,77888598,77888626,+,(CGG)n,Simple_repeat,Simple_repeat,1,28,0,77888598,77888626 -6 + chr1 78250214 78250286 chr1,78250214,78250286,-,MamRTE1,LINE,RTE-BovB,-2994,818,750,78247220,78251035 -6 - chr1 78292480 78292631 chr1,78292451,78292828,+,MLT1I,LTR,ERVL-MaLR,33,411,0,78292419,78292828 +3 + chr1 78293091 78293277 chr1,78293091,78293369,+,Tigger2a,DNA,TcMar-Tigger,1,269,-165,78293091,78293534 +4 + chr1 78293591 78293720 chr1,78293369,78293720,+,THE1A,LTR,ERVL-MaLR,1,355,0,78293369,78293720 +2 + chr1 78293720 78293890 chr1,78293720,78295314,+,THE1A-int,LTR,ERVL-MaLR,1,1580,0,78293720,78295314 +5 + chr1 78368537 78368727 chr1,78368147,78368854,+,LTR8B,LTR,ERV1,1,820,0,78368147,78368854 +3 + chr1 78369283 78369464 chr1,78369211,78369610,+,L1MEi,LINE,L1,2050,2525,-3794,78367162,78373404 +5 + chr1 79323802 79323959 chr1,79323802,79324089,+,AluJb,SINE,Alu,1,284,-28,79323802,79324117 +4 + chr1 79324700 79324710 chr1,79324431,79324710,-,L1MEd,LINE,L1,-5254,1832,1546,79319177,79326255 -2 - chr1 79324743 79324863 chr1,79324743,79325260,-,LTR8A,LTR,ERV1,-1,726,123,79324742,79325382 -5 - chr1 80115333 80115681 chr1,80115333,80115681,-,MER51B,LTR,ERV1,0,377,1,80115333,80115681 -6 - chr1 80115683 80116884 chr1,80115683,80116884,-,MER51-int,LTR,ERV1,0,7816,6581,80115683,80123464 -6 - chr1 80116889 80116918 chr1,80116889,80117132,+,MER57-int,LTR,ERV1,5570,5822,-1715,80111320,80118847 +5 + chr1 80373364 80373492 chr1,80373124,80373492,-,L1ME4b,LINE,L1,-77,815,405,80373047,80373896 +5 - chr1 80373658 80373758 chr1,80373658,80373867,+,MIR,SINE,MIR,32,260,-2,80373627,80373869 -2 + chr1 80374437 80374621 chr1,80374414,80374703,+,AluSz,SINE,Alu,1,295,-17,80374414,80374720 -1 + chr1 80584290 80584363 chr1,80583477,80584363,+,LTR12,LTR,ERV1,1,826,0,80583477,80584363 -1 + chr1 80644225 80644329 chr1,80643999,80644329,-,AluJb,SINE,Alu,0,312,11,80643999,80644339 -2 - chr1 81514630 81514704 chr1,81514505,81514704,+,MER121,DNA,hAT?,45,253,-148,81514461,81514852 -4 + chr1 81588300 81588312 chr1,81587982,81588312,-,LTR16A1,LTR,ERVL,-3,453,58,81587979,81588369 +4 - chr1 81588343 81588444 chr1,81588343,81589170,-,ERV3-16A3_I-int,LTR,ERVL,-476,5281,4473,81587867,81593642 +2 - chr1 82261016 82261133 chr1,82260838,82261356,-,MER1A,DNA,hAT-Charlie,-1,528,1,82260837,82261356 +1 - chr1 82903183 82903240 chr1,82903133,82903240,-,MIR3,SINE,MIR,-4,204,81,82903129,82903320 -1 - chr1 82903320 82903492 chr1,82903320,82903492,+,MIR,SINE,MIR,28,206,-56,82903293,82903548 +6 + chr1 82907468 82907582 chr1,82907454,82907640,+,MLT1B,LTR,ERVL-MaLR,183,371,-19,82907272,82907659 +1 + chr1 82973992 82975118 chr1,82973992,82975286,-,HSMAR1,DNA,TcMar-Mariner,0,1287,9,82973992,82975294 +2 - chr1 82984868 82984922 chr1,82984868,82985349,+,LTR16E2,LTR,ERVL,27,568,0,82984842,82985349 -1 + chr1 82986149 82986208 chr1,82986146,82986210,-,LFSINE_Vert,SINE,tRNA,-391,68,5,82985755,82986214 +1 - chr1 82991955 82991980 chr1,82991955,82992075,-,MIRb,SINE,MIR,-127,141,17,82991828,82992091 -4 - chr1 82996715 82996776 chr1,82996602,82997016,+,Tigger2a,DNA,TcMar-Tigger,2,433,-1,82996601,82997017 +3 + chr1 82997473 82997589 chr1,82997258,82997756,+,MLT1H,LTR,ERVL-MaLR,29,542,-37,82997230,82997793 +5 + chr1 83076141 83076224 chr1,83076133,83076308,+,MLT1I,LTR,ERVL-MaLR,252,438,-6,83075882,83076314 +3 + chr1 83096913 83096977 chr1,83096913,83097052,+,MIRb,SINE,MIR,44,189,-79,83096870,83097131 +4 + chr1 83160606 83160666 chr1,83160485,83160733,-,MIRb,SINE,MIR,0,268,3,83160485,83160735 -3 - chr1 83166704 83166815 chr1,83166179,83167107,-,L1MC1,LINE,L1,-1,6332,5364,83166178,83172470 -5 - chr1 83575793 83576254 chr1,83575793,83576254,-,L1ME1,LINE,L1,-14,6338,5872,83575779,83582125 +6 - chr1 83576275 83576437 chr1,83576275,83576437,-,L1ME1,LINE,L1,-552,5785,5626,83575723,83582062 +6 - chr1 83576437 83576569 chr1,83576437,83576569,+,LTR16,LTR,ERVL,294,426,-12,83576144,83576581 -6 + chr1 83576572 83576692 chr1,83576572,83576692,-,L1ME1,LINE,L1,-734,5618,5498,83575838,83582189 +6 - chr1 83576692 83576978 chr1,83576692,83576978,-,AluSq,SINE,Alu,-15,298,1,83576677,83576978 +6 - chr1 83576978 83577828 chr1,83576978,83577828,-,L1ME1,LINE,L1,-822,5497,4643,83576156,83582470 +6 - chr1 83577832 83578189 chr1,83577832,83578189,-,MER39,LTR,ERV1,0,707,325,83577832,83578513 +6 - chr1 83578293 83578672 chr1,83578293,83579499,-,L1ME1,LINE,L1,-1682,4637,3413,83576611,83582911 +2 - chr1 83790280 83790327 chr1,83789975,83790327,-,AluY,SINE,Alu,0,311,1,83789975,83790327 -1 - chr1 83790327 83790442 chr1,83790327,83790562,-,MIRc,SINE,MIR,-24,244,14,83790303,83790575 -4 - chr1 83801759 83801830 chr1,83801759,83801830,+,(GAAA)n,Simple_repeat,Simple_repeat,1,71,0,83801759,83801830 -6 + chr1 83802511 83802798 chr1,83802511,83802798,+,OldhAT1,DNA,hAT-Ac,180,465,-2383,83802332,83805181 -6 + chr1 83831621 83831850 chr1,83831544,83831883,-,LOR1a,LTR,ERV1,0,461,81,83831544,83831963 +5 - chr1 83849907 83849992 chr1,83849603,83849992,-,LTR78B,LTR,ERV1,0,1304,919,83849603,83850910 +4 - chr1 83979118 83979773 chr1,83979068,83979773,-,LTR8B,LTR,ERV1,0,820,1,83979068,83979773 +5 - chr1 83980308 83980488 chr1,83980308,83980488,-,AluJr,SINE,Alu,-56,256,81,83980252,83980568 +6 - chr1 83980488 83981547 chr1,83980488,83981547,+,L1MDa,LINE,L1,1857,2914,-3623,83978632,83985170 -6 + chr1 83981547 83981569 chr1,83981547,83981846,+,AluY,SINE,Alu,1,297,-14,83981547,83981860 -2 + chr1 83983832 83984100 chr1,83983809,83984100,+,AluJo,SINE,Alu,1,292,-20,83983809,83984120 -4 + chr1 83984100 83984300 chr1,83984100,83984944,+,L1PA16,LINE,L1,5331,6166,0,83978770,83984944 -1 + chr1 84076769 84076960 chr1,84076769,84076960,+,MIR,SINE,MIR,8,207,-55,84076762,84077015 -6 + chr1 84077084 84077157 chr1,84077084,84077157,-,L2c,LINE,L2,-10,3377,3308,84077074,84080464 +6 - chr1 84628230 84628461 chr1,84628153,84628461,+,L1M5,LINE,L1,5355,5689,-435,84622799,84628896 -5 + chr1 84628592 84628626 chr1,84628592,84628626,+,(TG)n,Simple_repeat,Simple_repeat,1,34,0,84628592,84628626 -6 + chr1 84629247 84629696 chr1,84629247,84629696,+,MER101,LTR,ERV1,4,474,0,84629244,84629696 -6 + chr1 84629831 84630150 chr1,84629831,84630150,+,AluJb,SINE,Alu,1,298,-14,84629831,84630164 -6 + chr1 84630560 84630887 chr1,84630560,84630964,+,MLT1E1A,LTR,ERVL-MaLR,298,680,0,84630263,84630964 -2 + chr1 84634932 84635020 chr1,84634522,84635096,-,MER77,LTR,ERVL,0,604,1,84634522,84635096 +1 - chr1 85152616 85152855 chr1,85152616,85152855,-,L2a,LINE,L2,0,3426,3167,85152616,85156021 +6 - chr1 85153007 85153201 chr1,85153007,85153201,-,L2a,LINE,L2,-259,3167,2944,85152748,85156144 +6 - chr1 85153251 85153434 chr1,85153251,85153434,-,L2a,LINE,L2,-649,2770,2535,85152602,85155968 +6 - chr1 85153819 85153934 chr1,85153819,85153934,-,L1ME3,LINE,L1,-10,6152,6019,85153809,85159952 +6 - chr1 85398457 85399467 chr1,85398061,85399467,+,MER65-int,LTR,ERV1,3362,5795,-392,85394700,85399859 +2 + chr1 85399467 85399963 chr1,85399467,85399994,+,LTR54,LTR,ERV1,1,508,-2,85399467,85399996 +5 + chr1 85448032 85448124 chr1,85448032,85448249,+,MER30,DNA,hAT-Charlie,1,229,-1,85448032,85448250 +5 + chr1 85467362 85467614 chr1,85467362,85467614,-,L3,LINE,CR1,-625,3474,3164,85466737,85470777 -6 - chr1 86571316 86571408 chr1,86571316,86571773,-,L2c,LINE,L2,-9,3378,2932,86571307,86574704 +2 - chr1 86693163 86693203 chr1,86693090,86694874,-,HUERS-P3b-int,LTR,ERV1,-6,7412,5572,86693084,86700445 +1 - chr1 86704108 86704187 chr1,86704108,86704187,+,L2b,LINE,L2,3296,3385,-2,86700813,86704189 -6 + chr1 86932199 86932372 chr1,86932170,86932372,+,L1MA4A,LINE,L1,5874,6078,-225,86926297,86932597 -5 + chr1 86934412 86934645 chr1,86933160,86934645,-,L1MCb,LINE,L1,-5123,1628,331,86928037,86934975 +4 - chr1 86934645 86934891 chr1,86934645,86934952,+,AluY,SINE,Alu,1,306,-5,86934645,86934957 -1 + chr1 86943685 86943739 chr1,86943436,86943739,+,AluJb,SINE,Alu,3,305,-7,86943434,86943746 -5 + chr1 86944567 86944653 chr1,86944354,86944653,-,AluSz,SINE,Alu,-10,302,1,86944344,86944653 +4 - chr1 87133108 87133308 chr1,87133108,87133308,+,MIRb,SINE,MIR,59,267,-1,87133050,87133309 +6 + chr1 87134478 87134559 chr1,87134478,87134559,+,(TA)n,Simple_repeat,Simple_repeat,1,82,0,87134478,87134559 +6 + chr1 87134946 87134974 chr1,87134946,87134974,+,A-rich,Low_complexity,Low_complexity,1,28,0,87134946,87134974 +6 + chr1 87162022 87162137 chr1,87160671,87162483,+,ERV3-16A3_I-int,LTR,ERVL,3181,5085,-141,87157491,87162624 +5 + chr1 87165795 87165981 chr1,87165795,87166171,-,MLT2B1,LTR,ERVL,0,520,140,87165795,87166310 -4 - chr1 87353524 87353641 chr1,87353441,87353641,-,Tigger19a,DNA,TcMar-Tigger,0,323,111,87353441,87353751 +5 - chr1 87353652 87353843 chr1,87353652,87353843,-,MIR,SINE,MIR,-6,256,29,87353646,87353871 +6 - chr1 87355175 87355198 chr1,87355175,87355288,+,L2a,LINE,L2,3294,3425,-1,87351882,87355289 -2 + chr1 87371569 87371643 chr1,87371408,87371643,-,L2b,LINE,L2,-86,3289,3041,87371322,87374683 +4 - chr1 87806933 87807035 chr1,87806933,87807035,-,L2a,LINE,L2,-35,3391,3280,87806898,87810314 +6 - chr1 87807088 87807265 chr1,87807088,87807265,-,MIRb,SINE,MIR,-52,216,25,87807036,87807289 +6 - chr1 87807585 87807714 chr1,87807585,87807714,+,Charlie5,DNA,hAT-Charlie,1,127,-2497,87807585,87810211 -6 + chr1 87807710 87808066 chr1,87807710,87808066,+,Charlie5,DNA,hAT-Charlie,2233,2624,0,87805478,87808066 -6 + chr1 87903899 87903949 chr1,87903854,87903949,-,MIRc,SINE,MIR,-23,245,161,87903831,87904109 +4 - chr1 88537883 88537989 chr1,88537883,88537989,-,MER133B,DNA?,DNA?,-25,115,13,88537858,88538001 +6 - chr1 88539041 88539088 chr1,88539041,88539088,+,(TG)n,Simple_repeat,Simple_repeat,1,47,0,88539041,88539088 -6 + chr1 88540191 88540436 chr1,88540191,88540436,-,MIRb,SINE,MIR,0,268,23,88540191,88540458 +5 - chr1 88570838 88570860 chr1,88570838,88570980,+,L3b,LINE,CR1,4927,5065,-167,88565912,88571147 -1 + chr1 89587903 89588085 chr1,89587686,89588199,-,MLT1N2,LTR,ERVL-MaLR,-1,561,27,89587685,89588225 +3 - chr1 89624850 89625003 chr1,89624778,89625003,+,MER103C,DNA,hAT-Charlie,42,277,-20,89624737,89625023 -5 + chr1 89626272 89626826 chr1,89626272,89626960,-,MER21C,LTR,ERVL,-28,910,278,89626244,89627237 +2 - chr1 89629725 89629782 chr1,89629656,89629867,-,L2b,LINE,L2,-40,3335,3120,89629616,89632986 -1 - chr1 89820290 89820309 chr1,89820290,89820309,+,(ACA)n,Simple_repeat,Simple_repeat,1,19,0,89820290,89820309 -6 + chr1 89939810 89940025 chr1,89939810,89940025,+,MIR,SINE,MIR,19,247,-15,89939792,89940040 +6 + chr1 89940046 89940144 chr1,89940046,89940144,+,MLT1J,LTR,ERVL-MaLR,6,108,-404,89940041,89940548 +6 + chr1 90533368 90533409 chr1,90533184,90533409,-,MIRc,SINE,MIR,-4,264,11,90533180,90533419 +4 - chr1 90782986 90783090 chr1,90782906,90783090,-,MIRb,SINE,MIR,-56,212,20,90782850,90783109 +5 - chr1 90789398 90789487 chr1,90789349,90789692,-,MSTA,LTR,ERVL-MaLR,-34,394,1,90789315,90789692 +3 - chr1 90860550 90860855 chr1,90860448,90860855,+,L1M5,LINE,L1,2211,2661,-3485,90858238,90864340 -5 + chr1 90860855 90861208 chr1,90860855,90861208,-,THE1A,LTR,ERVL-MaLR,0,355,1,90860855,90861208 +6 - chr1 90861208 90861364 chr1,90861208,90862780,-,THE1A-int,LTR,ERVL-MaLR,0,1580,1,90861208,90862780 +2 - chr1 90862857 90862920 chr1,90862780,90863131,-,THE1A,LTR,ERVL-MaLR,0,355,1,90862780,90863131 +1 - chr1 92189237 92189255 chr1,92188993,92189255,-,AluJb,SINE,Alu,-9,303,24,92188984,92189278 -1 - chr1 92189389 92189645 chr1,92189389,92189691,-,AluJb,SINE,Alu,-14,298,2,92189375,92189692 -4 - chr1 92189824 92189844 chr1,92189809,92189844,+,Alu,SINE,Alu,1,35,-98,92189809,92189942 +2 + chr1 92189824 92189890 chr1,92189822,92189890,-,7SLRNA,srpRNA,srpRNA,-268,52,1,92189554,92189890 -2 - chr1 92189959 92190185 chr1,92189959,92190185,-,L2c,LINE,L2,-1320,2099,1860,92188639,92192044 -6 - chr1 92190604 92190650 chr1,92190604,92190650,-,L2c,LINE,L2,-957,2462,2416,92189647,92193065 -6 - chr1 93262186 93262205 chr1,93261860,93262205,-,THE1D,LTR,ERVL-MaLR,-14,367,1,93261846,93262205 +5 - chr1 93262205 93262361 chr1,93262205,93263806,-,THE1D-int,LTR,ERVL-MaLR,0,1631,1,93262205,93263806 +2 - chr1 93273474 93273524 chr1,93273367,93273524,-,L2a,LINE,L2,-1894,1525,1366,93271473,93274889 +4 - chr1 93273525 93273583 chr1,93273525,93273713,-,MER20B,DNA,hAT-Charlie,-604,179,1,93272921,93273713 +1 - chr1 93290565 93290686 chr1,93290408,93290716,+,AluSz,SINE,Alu,1,309,-3,93290408,93290719 -3 + chr1 93305161 93305217 chr1,93305161,93305217,+,(TTTCTCT)n,Simple_repeat,Simple_repeat,1,59,0,93305161,93305217 -6 + chr1 93309540 93309634 chr1,93309517,93309826,+,AluSz6,SINE,Alu,1,311,-1,93309517,93309827 -5 + chr1 93309715 93309790 chr1,93309517,93309826,+,AluSz6,SINE,Alu,1,311,-1,93309517,93309827 -5 + chr1 93311169 93311594 chr1,93311033,93311594,+,L1M1,LINE,L1,4383,4946,-1200,93306651,93312794 -5 + chr1 93311595 93311608 chr1,93311595,93312339,+,L1M1,LINE,L1,3173,3921,-3644,93308423,93315983 -2 + chr1 93315151 93315269 chr1,93315151,93315450,+,AluSx,SINE,Alu,1,299,-13,93315151,93315463 -1 + chr1 93324635 93324729 chr1,93324562,93324774,+,L2a,LINE,L2,3186,3425,-1,93321377,93324775 -1 + chr1 93325769 93325819 chr1,93325522,93325819,-,AluSz,SINE,Alu,-5,307,1,93325517,93325819 +4 - chr1 93326602 93326652 chr1,93326406,93326652,-,L2,LINE,L2,-1897,1522,1221,93324509,93327872 +4 - chr1 93333343 93333398 chr1,93333188,93333488,+,AluSc,SINE,Alu,2,301,-8,93333187,93333496 -1 + chr1 93337399 93337521 chr1,93337399,93337521,+,MIR,SINE,MIR,2,141,-121,93337398,93337642 -1 + chr1 93337859 93338097 chr1,93337859,93338097,-,AluJr,SINE,Alu,-31,281,49,93337828,93338145 +6 - chr1 93338620 93338690 chr1,93338620,93338690,+,MLT1O,LTR,ERVL-MaLR,139,210,-332,93338482,93339022 -6 + chr1 93339000 93339318 chr1,93339000,93339318,+,L2b,LINE,L2,3048,3374,-1,93335953,93339319 -6 + chr1 93339447 93339491 chr1,93339447,93339491,+,MLT1O,LTR,ERVL-MaLR,347,389,-160,93339101,93339651 -6 + chr1 93594373 93594640 chr1,93594274,93594640,+,MLT1J,LTR,ERVL-MaLR,36,510,-2,93594239,93594642 +1 + chr1 93594688 93594784 chr1,93594688,93594910,-,L3b,LINE,CR1,-218,5014,4807,93594470,93599716 -5 - chr1 93599161 93599324 chr1,93599069,93599324,+,MLT1K,LTR,ERVL-MaLR,101,432,-163,93598969,93599487 +2 + chr1 93599356 93599438 chr1,93599356,93599438,+,MLT1K,LTR,ERVL-MaLR,507,588,-7,93598850,93599445 +6 + chr1 93599645 93599740 chr1,93599645,93599901,+,L2b,LINE,L2,2324,2606,-813,93597322,93600714 +5 + chr1 93602138 93602251 chr1,93602108,93602251,-,AluJr,SINE,Alu,-8,304,137,93602100,93602387 -2 - chr1 93605406 93605499 chr1,93605380,93605499,+,MIRc,SINE,MIR,152,266,-2,93605229,93605501 +2 + chr1 93753033 93753269 chr1,93753033,93753269,-,MIRc,SINE,MIR,0,268,17,93753033,93753285 +6 - chr1 93753543 93753591 chr1,93753543,93753591,+,(AC)n,Simple_repeat,Simple_repeat,1,48,0,93753543,93753591 -6 + chr1 93753866 93753897 chr1,93753866,93753897,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,93753866,93753897 -6 + chr1 93847572 93847657 chr1,93847572,93847657,+,tRNA-Arg-AGA,tRNA,tRNA,1,73,-3,93847572,93847660 +6 + chr1 93847896 93847923 chr1,93847896,93847923,+,(GCG)n,Simple_repeat,Simple_repeat,1,27,0,93847896,93847923 +6 + chr1 93848109 93848230 chr1,93848109,93848230,-,MER5A,DNA,hAT-Charlie,-16,173,52,93848093,93848281 -6 - chr1 93848688 93848939 chr1,93848688,93849082,-,L1ME4b,LINE,L1,-335,557,171,93848353,93849252 -5 - chr1 94249470 94249492 chr1,94249470,94249773,+,AluSp,SINE,Alu,3,305,-8,94249468,94249781 +5 + chr1 94318479 94318577 chr1,94318377,94318577,-,MIRb,SINE,MIR,-27,241,28,94318350,94318604 +5 - chr1 94318629 94318907 chr1,94318629,94318927,+,AluJr,SINE,Alu,2,299,-13,94318628,94318940 -2 + chr1 94324407 94324569 chr1,94324293,94324813,-,L4_A_Mam,LINE,RTE-X,-35,4955,4395,94324258,94329207 +1 - chr1 94585610 94585636 chr1,94585610,94585636,+,(TAT)n,Simple_repeat,Simple_repeat,1,26,0,94585610,94585636 -6 + chr1 94591522 94591795 chr1,94591522,94591795,-,AluJb,SINE,Alu,-39,273,1,94591483,94591795 +6 - chr1 94622719 94622849 chr1,94622671,94622849,-,LTR16C,LTR,ERVL,-118,371,190,94622553,94623038 +4 - chr1 94638461 94638558 chr1,94638410,94638585,+,AluSx,SINE,Alu,134,306,-6,94638277,94638591 -5 + chr1 94657533 94657924 chr1,94657490,94657924,-,LTR7Y,LTR,ERV1,0,472,1,94657490,94657924 +5 - chr1 94679425 94679497 chr1,94679414,94679497,+,MIR3,SINE,MIR,99,179,-29,94679316,94679526 -5 + chr1 94705439 94705557 chr1,94705430,94705590,-,L2b,LINE,L2,-255,3132,2975,94705175,94708564 +3 - chr1 94732324 94732437 chr1,94732324,94732782,-,L2c,LINE,L2,0,3387,2944,94732324,94735725 +1 - chr1 94836748 94836903 chr1,94836635,94836936,+,AluJb,SINE,Alu,3,308,-4,94836633,94836940 -5 + chr1 94838923 94839041 chr1,94838898,94839100,-,MIRb,SINE,MIR,-8,260,34,94838890,94839133 +3 - chr1 94931872 94931948 chr1,94931409,94931948,+,MER41A,LTR,ERV1,1,554,0,94931409,94931948 +2 + chr1 94963255 94963270 chr1,94963255,94963479,-,MIR,SINE,MIR,-14,248,2,94963241,94963480 -5 - chr1 95061645 95061860 chr1,95061645,95061860,-,MLT1O,LTR,ERVL-MaLR,-174,368,134,95061471,95061993 -6 - chr1 95067061 95067494 chr1,95067061,95067494,+,MER65A,LTR,ERV1,1,445,0,95067061,95067494 +6 + chr1 95138433 95138554 chr1,95138433,95138905,-,Tigger3b,DNA,TcMar-Tigger,0,1231,946,95138433,95139850 -5 - chr1 95163219 95164627 chr1,95158524,95164627,-,L1PA5,LINE,L1,-16,6138,4,95158508,95164630 +5 - chr1 95164650 95164870 chr1,95164650,95164870,-,HAL1ME,LINE,L1,-251,2214,1978,95164399,95166847 +6 - chr1 95165084 95165198 chr1,95165084,95165257,-,HAL1ME,LINE,L1,-702,1805,1625,95164382,95166881 +2 - chr1 95205096 95205133 chr1,95204985,95205220,-,MER112,DNA,hAT-Charlie,-4,257,1,95204981,95205220 +3 - chr1 95221686 95221777 chr1,95221610,95221777,-,MamGypsy2-I,LTR,Gypsy,-3176,990,801,95218434,95222577 +4 - chr1 95248774 95248797 chr1,95248774,95248898,+,L1MEg,LINE,L1,35,167,-5917,95248740,95254815 -2 + chr1 95249185 95249332 chr1,95249185,95249332,+,L1MEg,LINE,L1,506,658,-5426,95248680,95254758 -6 + chr1 95249334 95249448 chr1,95249334,95249630,+,AluJb,SINE,Alu,1,289,-23,95249334,95249653 -2 + chr1 95260822 95261114 chr1,95260200,95261114,-,L1ME3B,LINE,L1,-19,6154,5158,95260181,95266271 +5 - chr1 95351251 95351374 chr1,95351169,95351374,+,MIRb,SINE,MIR,32,235,-33,95351138,95351407 -5 + chr1 95351606 95351629 chr1,95351606,95351693,-,LTR85c,LTR,Gypsy?,-268,555,466,95351338,95352158 +2 - chr1 95352032 95352095 chr1,95351791,95352095,-,LTR85c,LTR,Gypsy?,-363,460,136,95351428,95352230 +4 - chr1 95356384 95356477 chr1,95356384,95356547,-,Charlie16a,DNA,hAT-Charlie,0,342,171,95356384,95356717 +2 - chr1 95380632 95381000 chr1,95380545,95381103,-,MLT2A2,LTR,ERVL,0,554,1,95380545,95381103 +1 - chr1 95477339 95477479 chr1,95477106,95477479,+,THE1B,LTR,ERVL-MaLR,1,364,0,95477106,95477479 +2 + chr1 95477479 95479034 chr1,95477479,95479034,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,95477479,95479034 +6 + chr1 95479034 95479356 chr1,95479034,95479410,+,THE1B,LTR,ERVL-MaLR,1,364,0,95479034,95479410 +5 + chr1 95514431 95514528 chr1,95514431,95514528,-,MER91A,DNA,hAT-Tip100,-92,104,9,95514339,95514536 -6 - chr1 95514802 95514870 chr1,95514802,95514870,-,L1MA8,LINE,L1,0,6291,6228,95514802,95521097 -6 - chr1 95514870 95515203 chr1,95514870,95515203,-,Tigger3a,DNA,TcMar-Tigger,0,348,1,95514870,95515203 -6 - chr1 95515203 95515464 chr1,95515203,95515485,-,L1MA8,LINE,L1,-64,6227,5948,95515139,95521432 -5 - chr1 95538582 95538675 chr1,95538000,95538675,-,LTR12,LTR,ERV1,0,826,1,95538000,95538675 -2 - chr1 95743096 95743135 chr1,95737199,95743135,-,L1PB1,LINE,L1,-1,6866,625,95737198,95743759 -1 - chr1 95743127 95743202 chr1,95743127,95743316,-,L1PB1,LINE,L1,-6663,200,3,95736464,95743318 -4 - chr1 95759291 95759470 chr1,95759283,95761273,+,L1MA2,LINE,L1,3235,5235,-911,95756049,95762184 +5 + chr1 95777147 95777301 chr1,95776084,95777301,+,MLT1G-int,LTR,ERVL-MaLR,11,1437,-52,95776074,95777353 +2 + chr1 95777324 95777378 chr1,95777324,95777463,+,MLT1G,LTR,ERVL-MaLR,1,143,-448,95777324,95777911 +4 + chr1 95991986 95992507 chr1,95991930,95992507,-,L2a,LINE,L2,-628,2791,2101,95991302,95994607 -1 - chr1 95995302 95995417 chr1,95995302,95995417,-,L2c,LINE,L2,-1007,2412,2289,95994295,95997705 -6 - chr1 96254450 96254797 chr1,96254450,96254797,+,THE1B,LTR,ERVL-MaLR,1,364,0,96254450,96254797 -6 + chr1 96255133 96255283 chr1,96255133,96255283,+,L1PA16,LINE,L1,6017,6166,0,96249117,96255283 -6 + chr1 96255294 96255338 chr1,96255294,96255338,-,L1MB2,LINE,L1,-25,6146,6101,96255269,96261438 +6 - chr1 96255338 96255750 chr1,96255338,96255776,-,L1MB2,LINE,L1,-37,6134,5682,96255301,96261457 +2 - chr1 96353154 96353232 chr1,96353058,96353394,-,L1MEd,LINE,L1,-6612,491,118,96346446,96353511 +3 - chr1 96374082 96374125 chr1,96373956,96374326,+,LTR40A1,LTR,ERVL,90,429,-155,96373867,96374481 -1 + chr1 97265414 97265477 chr1,97265092,97265514,+,L2a,LINE,L2,2949,3426,0,97262144,97265514 +3 + chr1 97394154 97394362 chr1,97393291,97394362,-,L1PA5,LINE,L1,0,6154,5084,97393291,97399445 +5 - chr1 97394362 97394419 chr1,97394362,97394748,-,Tigger1,DNA,TcMar-Tigger,-2004,414,1,97392358,97394748 +2 - chr1 97420007 97420095 chr1,97419933,97420095,-,LTR33,LTR,ERVL,-8,507,338,97419925,97420432 +4 - chr1 97933942 97934169 chr1,97933942,97934230,+,LFSINE_Vert,SINE,tRNA,5,295,-164,97933938,97934394 -2 + chr1 97941573 97941746 chr1,97941312,97942062,-,L1MB7,LINE,L1,-19,6165,5400,97941293,97947461 +1 - chr1 97967005 97967198 chr1,97966965,97967198,-,MLT1L,LTR,ERVL-MaLR,-17,593,350,97966948,97967547 +5 - chr1 97988000 97988337 chr1,97987951,97988337,-,MLT1A,LTR,ERVL-MaLR,0,374,1,97987951,97988337 +5 - chr1 97988341 97988392 chr1,97988341,97988392,-,MER91B,DNA,hAT-Tip100,-52,138,88,97988289,97988479 +6 - chr1 97988403 97988533 chr1,97988403,97988533,-,MER91B,DNA,hAT-Tip100,-3324,200,3,97985079,97988535 +6 - chr1 97988948 97989033 chr1,97988948,97989033,-,L3b,LINE,CR1,-182,5050,4964,97988766,97993996 +6 - chr1 97989425 97989569 chr1,97989425,97989588,+,AluSp,SINE,Alu,137,299,-14,97989289,97989602 -2 + chr1 97994916 97994937 chr1,97994760,97994937,-,MIRc,SINE,MIR,-17,251,68,97994743,97995004 +4 - chr1 98045123 98045150 chr1,98045123,98045150,+,(AAAC)n,Simple_repeat,Simple_repeat,1,27,0,98045123,98045150 -6 + chr1 98046173 98046239 chr1,98046173,98046239,+,(GCTGCC)n,Simple_repeat,Simple_repeat,1,66,0,98046173,98046239 -1 + chr1 98249446 98249546 chr1,98249286,98249629,+,THE1B,LTR,ERVL-MaLR,1,364,0,98249286,98249629 +3 + chr1 98270628 98270887 chr1,98270628,98270887,+,MLT1L,LTR,ERVL-MaLR,350,602,-8,98270279,98270895 +6 + chr1 98270896 98270947 chr1,98270896,98270947,+,MIRb,SINE,MIR,168,217,-51,98270729,98270998 +6 + chr1 98270969 98271212 chr1,98270969,98271212,+,MIRb,SINE,MIR,2,252,-16,98270968,98271228 +6 + chr1 98271390 98271952 chr1,98271390,98271952,-,L1PA11,LINE,L1,-1510,4636,4070,98269880,98276021 -6 - chr1 98271944 98272323 chr1,98271944,98272323,+,L1PA11,LINE,L1,4636,5015,-1131,98267309,98273454 +6 + chr1 98272323 98272658 chr1,98272323,98272704,+,THE1D,LTR,ERVL-MaLR,1,381,0,98272323,98272704 +5 + chr1 98660524 98660585 chr1,98660524,98660585,-,L2b,LINE,L2,-223,3152,3092,98660301,98663676 +6 - chr1 99146774 99147315 chr1,99146247,99147315,+,MER52C,LTR,ERV1,1,1278,0,99146247,99147315 +2 + chr1 99148544 99148580 chr1,99148544,99148580,+,(TATAGA)n,Simple_repeat,Simple_repeat,1,36,0,99148544,99148580 +6 + chr1 99534003 99534015 chr1,99534003,99534154,+,MER58A,DNA,hAT-Charlie,4,159,-65,99534000,99534219 -1 + chr1 99968383 99968477 chr1,99968337,99968693,-,THE1A,LTR,ERVL-MaLR,0,355,1,99968337,99968693 +5 - chr1 100030566 100030592 chr1,100030375,100030592,+,MER30,DNA,hAT-Charlie,2,228,-2,100030374,100030594 +1 + chr1 100031348 100031482 chr1,100031348,100031482,-,L1MC4,LINE,L1,-189,2588,2451,100031159,100033932 -6 - chr1 100031482 100031717 chr1,100031482,100031717,-,MER8,DNA,TcMar-Tigger,0,239,1,100031482,100031717 -6 - chr1 100031717 100032555 chr1,100031717,100032555,-,L1MC4,LINE,L1,-547,7495,6950,100031170,100039504 -6 - chr1 100032555 100032844 chr1,100032555,100032844,-,AluSg4,SINE,Alu,-22,288,1,100032533,100032844 -6 - chr1 100032844 100033165 chr1,100032844,100033165,-,L1MC4,LINE,L1,-1093,6949,6701,100031751,100039865 -6 - chr1 100033172 100033305 chr1,100033172,100033305,+,FLAM_C,SINE,Alu,1,133,-10,100033172,100033315 +6 + chr1 100033540 100034194 chr1,100033540,100034194,-,L1MC4,LINE,L1,-4101,2114,1439,100029439,100035632 -6 - chr1 100034213 100034381 chr1,100034213,100034381,-,L1MC4,LINE,L1,-5047,1168,983,100029166,100035363 -6 - chr1 100034435 100034553 chr1,100034435,100034553,-,L1MC4,LINE,L1,-5326,889,747,100029109,100035299 -6 - chr1 100034645 100034721 chr1,100034645,100034721,-,L1MC4,LINE,L1,-5499,716,641,100029146,100035361 -6 - chr1 100034874 100035026 chr1,100034874,100035026,+,MLT1N2,LTR,ERVL-MaLR,422,558,-4,100034453,100035030 +6 + chr1 100035059 100035252 chr1,100035059,100035252,-,MER2,DNA,TcMar-Tigger,0,345,135,100035059,100035386 -6 - chr1 100035475 100035637 chr1,100035475,100035665,+,L2a,LINE,L2,3204,3425,-1,100032272,100035666 +5 + chr1 100057990 100058011 chr1,100057919,100058011,+,MIRb,SINE,MIR,119,225,-37,100057801,100058048 -5 + chr1 100264009 100264031 chr1,100263767,100264863,+,MER11A,LTR,ERVK,1,1266,0,100263767,100264863 -5 + chr1 100265171 100265247 chr1,100265171,100265339,+,MIR,SINE,MIR,40,262,0,100265132,100265339 -2 + chr1 100344477 100344500 chr1,100344032,100344500,+,L2b,LINE,L2,2947,3387,0,100341086,100344500 +1 + chr1 100627154 100627268 chr1,100627154,100627268,+,MIRc,SINE,MIR,39,151,-117,100627116,100627385 -6 + chr1 100640489 100640613 chr1,100640452,100640873,-,MLT1F,LTR,ERVL-MaLR,0,549,83,100640452,100640955 +1 - chr1 100995637 100995738 chr1,100995619,100995738,-,L2b,LINE,L2,0,3375,3254,100995619,100998991 -2 - chr1 101075276 101075387 chr1,101075245,101075387,-,MIR,SINE,MIR,-103,159,1,101075142,101075387 -2 - chr1 101075546 101075660 chr1,101075546,101075660,+,MLT1K,LTR,ERVL-MaLR,115,230,-365,101075432,101076025 +6 + chr1 101080495 101080613 chr1,101080495,101080632,-,MIRb,SINE,MIR,0,268,148,101080495,101080779 -5 - chr1 101082828 101083007 chr1,101082828,101083007,+,L2,LINE,L2,2787,2963,-456,101080042,101083463 +6 + chr1 101083174 101083204 chr1,101083174,101083204,+,(TTAA)n,Simple_repeat,Simple_repeat,1,30,0,101083174,101083204 +6 + chr1 101085052 101085157 chr1,101084881,101085358,-,L2b,LINE,L2,-1,3386,2915,101084880,101088272 -3 - chr1 101243334 101243584 chr1,101243334,101243584,-,AluJo,SINE,Alu,-19,293,54,101243315,101243637 -6 - chr1 101343839 101343995 chr1,101343650,101344072,+,MLT1B,LTR,ERVL-MaLR,8,467,0,101343643,101344072 +3 + chr1 101345763 101345845 chr1,101345739,101346020,-,L1PA16,LINE,L1,-4,6162,5867,101345735,101351886 -3 - chr1 101389670 101389777 chr1,101389657,101389777,-,THE1B,LTR,ERVL-MaLR,-49,315,196,101389608,101389972 -2 - chr1 101389779 101389817 chr1,101389779,101389817,+,MIRb,SINE,MIR,224,261,-7,101389556,101389824 +6 + chr1 101723742 101723875 chr1,101723301,101724607,+,MLT1J2-int,LTR,ERVL-MaLR,2,1387,0,101723300,101724607 +1 + chr1 102199739 102199793 chr1,102199506,102199793,-,LTR80B,LTR,ERVL,0,584,295,102199506,102200087 +5 - chr1 102199794 102199997 chr1,102199794,102200186,-,MSTA,LTR,ERVL-MaLR,0,428,1,102199794,102200186 +2 - chr1 102310270 102310328 chr1,102309509,102310429,+,L1MCa,LINE,L1,3588,4518,-1803,102305922,102312232 -3 + chr1 102388535 102388629 chr1,102388513,102388641,+,FLAM_A,SINE,Alu,1,126,-16,102388513,102388657 -3 + chr1 102767523 102767623 chr1,102767307,102767623,-,AluJo,SINE,Alu,-2,310,1,102767305,102767623 +4 - chr1 102772958 102773092 chr1,102772229,102773104,-,L1MCa,LINE,L1,-5581,927,94,102766648,102773197 +3 - chr1 102853603 102853842 chr1,102853603,102855052,+,LTR12C,LTR,ERV1,3,1579,0,102853601,102855052 -1 + chr1 103425105 103425133 chr1,103424540,103425133,-,MamGyp-int,LTR,Gypsy,-3795,1308,680,103420745,103425812 -2 - chr1 103425402 103425465 chr1,103425402,103425569,-,MER112,DNA,hAT-Charlie,-69,192,2,103425333,103425570 -5 - chr1 103432891 103433050 chr1,103432738,103433050,+,L1MCa,LINE,L1,65,384,-6039,103432674,103439089 -4 + chr1 103469342 103469354 chr1,103469256,103469354,-,MER1A,DNA,hAT-Charlie,-369,160,63,103468887,103469416 +4 - chr1 103469354 103469390 chr1,103469354,103469426,+,AluSz6,SINE,Alu,240,311,-1,103469115,103469427 -2 + chr1 104076776 104077087 chr1,104076776,104077087,+,AluSc,SINE,Alu,1,309,0,104076776,104077087 +5 + chr1 105600492 105600578 chr1,105599896,105600578,+,Tigger6a,DNA,TcMar-Tigger,399,1083,0,105599498,105600578 -5 + chr1 105601150 105601385 chr1,105601008,105601573,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,105601008,105601573 +5 - chr1 105602565 105602846 chr1,105602565,105602846,+,LTR80B,LTR,ERVL,301,578,-6,105602265,105602852 -6 + chr1 105603216 105603293 chr1,105603216,105603293,-,MamSINE1,SINE,tRNA-RTE,-157,133,57,105603059,105603349 +6 - chr1 105603293 105603562 chr1,105603293,105603585,+,AluSq,SINE,Alu,1,303,-10,105603293,105603595 -2 + chr1 105605935 105606069 chr1,105605745,105606069,-,MER92D,LTR,ERV1,0,320,1,105605745,105606069 +5 - chr1 105618775 105618958 chr1,105618760,105619072,+,L2a,LINE,L2,2793,3186,-240,105615968,105619312 -1 + chr1 105952208 105952279 chr1,105949917,105952689,-,L1PBa,LINE,L1,-3768,3686,850,105946149,105953538 +3 - chr1 105952504 105952689 chr1,105949917,105952689,-,L1PBa,LINE,L1,-3768,3686,850,105946149,105953538 +4 - chr1 105952721 105952894 chr1,105952721,105953010,-,L1PBa,LINE,L1,-5949,503,206,105946772,105953215 +1 - chr1 105953372 105953436 chr1,105953357,105953436,+,L2a,LINE,L2,2390,2467,-952,105950968,105954388 -4 + chr1 105988450 105988507 chr1,105988432,105988627,+,MIR,SINE,MIR,61,258,-4,105988372,105988631 -3 + chr1 105992166 105992344 chr1,105991959,105992660,-,L1ME1,LINE,L1,-133,6046,5320,105991826,105997979 +3 - chr1 106023082 106023205 chr1,106023074,106023205,+,L2b,LINE,L2,3230,3362,-13,106019845,106023218 -4 + chr1 106082965 106083086 chr1,106082945,106083242,-,AluSq2,SINE,Alu,-14,299,1,106082931,106083242 -3 - chr1 107994182 107994219 chr1,107993941,107994219,+,LFSINE_Vert,SINE,tRNA,25,326,-133,107993917,107994352 +2 + chr1 108071482 108071492 chr1,108071369,108071492,-,MIR3,SINE,MIR,-159,109,3,108071210,108071494 -1 - chr1 108072481 108072697 chr1,108072481,108072995,+,LTR45,LTR,ERV1,1,524,-1,108072481,108072996 +4 + chr1 108200191 108200244 chr1,108200191,108200244,+,G-rich,Low_complexity,Low_complexity,1,54,0,108200191,108200244 +6 + chr1 108201096 108201206 chr1,108201096,108201206,+,MIRc,SINE,MIR,99,210,-52,108200998,108201258 +6 + chr1 108201683 108201838 chr1,108201683,108201838,-,AluSx3,SINE,Alu,0,311,155,108201683,108201992 -6 - chr1 108201897 108202077 chr1,108201897,108202077,+,L1MD1,LINE,L1,5661,5845,-397,108196237,108202474 +6 + chr1 108202076 108202282 chr1,108202076,108202282,+,L1ME1,LINE,L1,5925,6136,-43,108196152,108202325 +6 + chr1 108202450 108202590 chr1,108202450,108202590,+,MER5A1,DNA,hAT-Charlie,13,164,-2,108202438,108202592 +6 + chr1 108202624 108202743 chr1,108202624,108202800,+,MER5C,DNA,hAT-Charlie,52,259,-54,108202573,108202854 +5 + chr1 108261259 108261392 chr1,108261259,108261392,+,MIR3,SINE,MIR,34,174,-34,108261226,108261426 -6 + chr1 108261546 108262790 chr1,108261546,108266056,+,L1PA3,LINE,L1,10,6470,0,108261537,108266056 -2 + chr1 108273511 108273689 chr1,108273511,108273821,+,AluSx,SINE,Alu,1,307,-5,108273511,108273826 -1 + chr1 108420689 108420866 chr1,108420558,108420866,-,AluSx,SINE,Alu,-7,305,1,108420551,108420866 -1 - chr1 108431590 108432833 chr1,108428322,108432833,-,L1PA3,LINE,L1,0,6470,10,108428322,108432842 -2 - chr1 108432987 108433120 chr1,108432987,108433120,-,MIR3,SINE,MIR,-34,174,34,108432953,108433153 -6 - chr1 108858294 108858323 chr1,108858294,108858323,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,108858294,108858323 +6 + chr1 109088083 109088322 chr1,109088083,109088322,+,MIRc,SINE,MIR,3,268,0,109088081,109088322 -6 + chr1 109088403 109088708 chr1,109088403,109088708,-,AluSp,SINE,Alu,-4,309,1,109088399,109088708 +6 - chr1 109088720 109088741 chr1,109088720,109088741,+,(TTA)n,Simple_repeat,Simple_repeat,1,21,0,109088720,109088741 -6 + chr1 109088741 109089050 chr1,109088741,109089050,-,AluSx,SINE,Alu,-27,285,1,109088714,109089050 +6 - chr1 109089845 109089874 chr1,109089845,109089874,+,(TTG)n,Simple_repeat,Simple_repeat,1,29,0,109089845,109089874 -6 + chr1 109089874 109090163 chr1,109089874,109090163,-,AluSp,SINE,Alu,-27,286,2,109089847,109090164 +6 - chr1 109090166 109090297 chr1,109090166,109090297,-,AluSp,SINE,Alu,-181,132,1,109089985,109090297 +6 - chr1 109596343 109596398 chr1,109596343,109596649,-,AluSz,SINE,Alu,0,312,5,109596343,109596653 -4 - chr1 109597360 109597451 chr1,109597179,109597451,+,AluSx1,SINE,Alu,1,272,-40,109597179,109597491 +2 + chr1 109597455 109597475 chr1,109597455,109597475,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,109597455,109597475 +6 + chr1 109597709 109597739 chr1,109597709,109597739,+,(TTCAT)n,Simple_repeat,Simple_repeat,1,32,0,109597709,109597739 +6 + chr1 109628600 109628635 chr1,109628600,109628635,+,(CTCAC)n,Simple_repeat,Simple_repeat,1,35,0,109628600,109628635 -6 + chr1 109725820 109725947 chr1,109725516,109725947,+,LTR3,LTR,ERVK,1,432,0,109725516,109725947 +1 + chr1 109725948 109726068 chr1,109725948,109727169,+,HERVK3-int,LTR,ERVK,1,1259,-5943,109725948,109733112 +4 + chr1 109732175 109732245 chr1,109732101,109732245,-,MIR,SINE,MIR,-76,192,2,109732025,109732246 -2 - chr1 109732326 109732350 chr1,109732326,109732454,-,L2c,LINE,L2,-493,2926,2794,109731833,109735247 -4 - chr1 109829078 109829130 chr1,109829078,109829151,+,MIR,SINE,MIR,183,252,-10,109828896,109829161 +4 + chr1 109833300 109833415 chr1,109832300,109833856,+,HUERS-P1-int,LTR,ERV1,1,1625,-4638,109832300,109838494 +3 + chr1 109871368 109871436 chr1,109871333,109871829,+,MLT1D,LTR,ERVL-MaLR,2,505,0,109871332,109871829 +5 + chr1 109897363 109897726 chr1,109897363,109897726,+,L2a,LINE,L2,3036,3426,0,109894328,109897726 +6 + chr1 109897787 109897861 chr1,109897787,109897940,+,MER58A,DNA,hAT-Charlie,1,159,-65,109897787,109898005 +5 + chr1 110058683 110058753 chr1,110058683,110058753,+,L2b,LINE,L2,3298,3370,-5,110055386,110058758 +6 + chr1 110059075 110059101 chr1,110059075,110059101,+,(AGGGA)n,Simple_repeat,Simple_repeat,1,27,0,110059075,110059101 +6 + chr1 110059910 110059944 chr1,110059910,110059944,+,(TT)n,Simple_repeat,Simple_repeat,1,34,0,110059910,110059944 +6 + chr1 110061918 110062028 chr1,110061918,110062028,+,L2c,LINE,L2,2737,2860,-559,110059182,110062587 +6 + chr1 110062170 110062398 chr1,110062170,110062398,+,L2c,LINE,L2,3110,3351,-36,110059061,110062434 +6 + chr1 110062528 110062555 chr1,110062528,110062555,+,A-rich,Low_complexity,Low_complexity,1,28,0,110062528,110062555 +5 + chr1 110109299 110109413 chr1,110109286,110109523,-,L2b,LINE,L2,-5,3370,3118,110109281,110112640 -3 - chr1 110109605 110109702 chr1,110109586,110109702,-,FLAM_A,SINE,Alu,-10,132,17,110109576,110109718 -2 - chr1 110166299 110166314 chr1,110166299,110166388,-,MER5A1,DNA,hAT-Charlie,-30,136,45,110166269,110166432 +2 - chr1 110177902 110178029 chr1,110177902,110178029,+,Tigger12,DNA,TcMar-Tigger,2,135,-2340,110177901,110180369 -6 + chr1 110178627 110178719 chr1,110178547,110178903,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,110178547,110178903 +1 - chr1 110286375 110286694 chr1,110286284,110286694,+,Charlie4a,DNA,hAT-Charlie,71,508,0,110286214,110286694 -5 + chr1 110287197 110287509 chr1,110287197,110287509,+,AluSx,SINE,Alu,1,310,-2,110287197,110287511 -6 + chr1 110287535 110287564 chr1,110287535,110287564,+,(AAAATA)n,Simple_repeat,Simple_repeat,1,31,0,110287535,110287564 -6 + chr1 110288083 110288191 chr1,110288083,110288191,+,MIRc,SINE,MIR,93,200,-68,110287991,110288259 -6 + chr1 110288265 110288571 chr1,110288265,110288705,-,MLT1C,LTR,ERVL-MaLR,0,467,1,110288265,110288705 +2 - chr1 110318765 110318882 chr1,110318692,110318910,+,AluJb,SINE,Alu,86,303,-9,110318607,110318919 -3 + chr1 110408472 110408759 chr1,110408472,110408759,-,AluJr,SINE,Alu,-22,290,2,110408450,110408760 -1 - chr1 110408775 110408934 chr1,110408775,110408934,-,L1ME4a,LINE,L1,-182,5942,5777,110408593,110414710 -6 - chr1 110408942 110409158 chr1,110408942,110409176,-,AluJr,SINE,Alu,-55,257,3,110408887,110409178 -1 - chr1 110412015 110412148 chr1,110411854,110412148,-,AluSz6,SINE,Alu,0,312,1,110411854,110412148 -1 - chr1 110412935 110412985 chr1,110412810,110412985,+,MIRb,SINE,MIR,31,238,-30,110412780,110413015 +1 + chr1 110413321 110413410 chr1,110413156,110413640,+,LTR15,LTR,ERV1,1,487,-6,110413156,110413646 +3 + chr1 110414102 110414231 chr1,110414102,110414246,-,MIR,SINE,MIR,-79,183,63,110414023,110414308 -4 - chr1 110416187 110416274 chr1,110416187,110416384,+,MIRb,SINE,MIR,91,268,0,110416097,110416384 +5 + chr1 110417489 110417603 chr1,110417470,110417603,-,AluJr,SINE,Alu,-179,133,2,110417291,110417604 -1 - chr1 110417794 110417916 chr1,110417761,110418072,-,AluSp,SINE,Alu,-1,312,1,110417760,110418072 -3 - chr1 110421635 110421703 chr1,110420945,110421703,+,LTR8B,LTR,ERV1,1,820,0,110420945,110421703 +2 + chr1 110421703 110421879 chr1,110421703,110422302,+,LTR48B,LTR,ERV1,32,644,0,110421672,110422302 +5 + chr1 110423469 110423526 chr1,110423280,110423577,-,AluJb,SINE,Alu,-14,298,1,110423266,110423577 -5 - chr1 110426352 110426450 chr1,110426352,110426450,-,MIRb,SINE,MIR,-131,137,25,110426221,110426474 -6 - chr1 110426492 110426769 chr1,110426492,110426769,-,L1ME4a,LINE,L1,-5,6119,5831,110426487,110432599 -6 - chr1 110432147 110432250 chr1,110432147,110432250,-,MIRb,SINE,MIR,-163,105,2,110431984,110432251 -6 - chr1 110432251 110432338 chr1,110432251,110432338,+,MIRb,SINE,MIR,155,253,-15,110432097,110432353 +6 + chr1 110432305 110432351 chr1,110432305,110432351,+,L2a,LINE,L2,3375,3423,-3,110428931,110432354 +6 + chr1 110457241 110457277 chr1,110457241,110457277,+,G-rich,Low_complexity,Low_complexity,1,37,0,110457241,110457277 -6 + chr1 110487694 110487949 chr1,110487694,110487949,-,L2a,LINE,L2,0,3426,3136,110487694,110491084 +6 - chr1 110488403 110488438 chr1,110488403,110488438,+,G-rich,Low_complexity,Low_complexity,1,35,0,110488403,110488438 -6 + chr1 110488846 110489162 chr1,110488846,110489162,-,MIRc,SINE,MIR,-8,260,20,110488838,110489181 +6 - chr1 110654823 110654894 chr1,110654823,110654894,+,MIRc,SINE,MIR,73,143,-125,110654751,110655019 -6 + chr1 110655142 110655161 chr1,110655142,110655161,+,(TA)n,Simple_repeat,Simple_repeat,1,19,0,110655142,110655161 -6 + chr1 110655162 110655181 chr1,110655162,110655181,+,(TG)n,Simple_repeat,Simple_repeat,1,19,0,110655162,110655181 -6 + chr1 110656476 110656626 chr1,110656476,110656626,-,MIR3,SINE,MIR,-10,198,41,110656466,110656666 +6 - chr1 110936369 110939108 chr1,110933261,110939108,+,L1MA2,LINE,L1,17,5976,-1589,110933245,110940697 -5 + chr1 110939108 110939398 chr1,110939108,110939398,+,AluY,SINE,Alu,13,302,-9,110939096,110939407 -6 + chr1 110939398 110941130 chr1,110939398,110941130,+,L1MA2,LINE,L1,5977,7723,0,110933422,110941130 -6 + chr1 110941158 110942196 chr1,110941158,110942196,-,L1PA6,LINE,L1,-1117,6765,5683,110940041,110947878 +6 - chr1 110942189 110942353 chr1,110942189,110942464,-,L1PA6,LINE,L1,-2332,5550,5281,110939857,110947744 +1 - chr1 110943693 110943847 chr1,110943693,110943847,+,L2b,LINE,L2,2986,3135,-240,110940708,110944087 +6 + chr1 110943971 110944673 chr1,110943971,110944673,-,L2,LINE,L2,-536,2883,2089,110943435,110946761 -6 - chr1 110944896 110945160 chr1,110944896,110945167,-,AluJr,SINE,Alu,-12,300,16,110944884,110945182 -4 - chr1 110952835 110952848 chr1,110952835,110952923,+,A-rich,Low_complexity,Low_complexity,1,94,0,110952835,110952923 +5 + chr1 110964568 110964616 chr1,110964568,110964616,-,LTR16A,LTR,ERVL,-398,53,6,110964170,110964621 -6 - chr1 111184847 111184869 chr1,111184847,111184869,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,111184847,111184869 -6 + chr1 111317600 111317623 chr1,111317380,111317623,+,MIRc,SINE,MIR,19,268,0,111317362,111317623 -5 + chr1 111431046 111431165 chr1,111430962,111431165,+,L1MC5,LINE,L1,6941,7154,-2150,111424022,111433315 -5 + chr1 111431182 111431355 chr1,111431182,111431355,+,MER20,DNA,hAT-Charlie,1,184,-35,111431182,111431390 -6 + chr1 111431355 111431417 chr1,111431355,111431417,-,Tigger5b,DNA,TcMar-Tigger,0,472,411,111431355,111431827 +6 - chr1 111431425 111431650 chr1,111431425,111431650,+,L1PA8,LINE,L1,5941,6165,-7,111425485,111431657 -6 + chr1 111431655 111431713 chr1,111431655,111431713,+,Tigger5b,DNA,TcMar-Tigger,411,468,-4,111431245,111431717 -6 + chr1 111431725 111431757 chr1,111431725,111431757,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,111431725,111431757 -6 + chr1 111431757 111431823 chr1,111431757,111431823,-,Tigger5b,DNA,TcMar-Tigger,-406,66,1,111431351,111431823 +6 - chr1 111432343 111432393 chr1,111432343,111432393,+,L3,LINE,CR1,4042,4091,-8,111428302,111432401 -6 + chr1 111440998 111441023 chr1,111440998,111441023,+,(AC)n,Simple_repeat,Simple_repeat,1,25,0,111440998,111441023 -6 + chr1 111599655 111599754 chr1,111599504,111599754,-,MER21B,LTR,ERVL,-586,282,32,111598918,111599785 +5 - chr1 111599754 111600095 chr1,111599754,111600184,+,MSTB,LTR,ERVL-MaLR,1,426,0,111599754,111600184 -5 + chr1 111602271 111602333 chr1,111602271,111602465,+,MIRb,SINE,MIR,23,243,-25,111602249,111602490 -2 + chr1 111604369 111604398 chr1,111604353,111604398,+,(CTGCTCA)n,Simple_repeat,Simple_repeat,1,49,0,111604353,111604398 -5 + chr1 111608136 111608723 chr1,111607038,111608899,-,SVA_D,Retroposon,SVA,-18,1368,33,111607020,111608931 +1 - chr1 111739964 111740077 chr1,111739964,111740156,-,L2a,LINE,L2,-26,3400,3206,111739938,111743361 -4 - chr1 111746564 111746620 chr1,111746564,111746620,-,L3,LINE,CR1,-2,4097,4044,111746562,111750663 -5 - chr1 111746701 111746888 chr1,111746701,111746888,-,MIR,SINE,MIR,-54,208,13,111746647,111746900 -6 - chr1 111746849 111746957 chr1,111746849,111746957,+,MIRc,SINE,MIR,26,142,-126,111746824,111747083 +6 + chr1 111747009 111747153 chr1,111747009,111747153,-,MIRc,SINE,MIR,-123,145,7,111746886,111747159 -6 - chr1 111853762 111853796 chr1,111853470,111853796,+,L2a,LINE,L2,3103,3426,0,111850368,111853796 -5 + chr1 111853800 111853923 chr1,111853800,111853923,+,MIRb,SINE,MIR,123,260,-8,111853678,111853931 -6 + chr1 111853923 111854026 chr1,111853923,111854026,+,L2a,LINE,L2,3319,3422,-4,111850605,111854030 -6 + chr1 111909742 111909893 chr1,111909742,111909926,+,MIRb,SINE,MIR,73,268,0,111909670,111909926 +4 + chr1 111989949 111990014 chr1,111989949,111990014,+,G-rich,Low_complexity,Low_complexity,1,68,0,111989949,111990014 +6 + chr1 111996649 111996893 chr1,111996649,111996893,+,MIRb,SINE,MIR,1,261,-1,111996649,111996894 +6 + chr1 111997850 111998045 chr1,111997850,111998045,-,L1MC5,LINE,L1,-9,9295,9092,111997841,112007136 -6 - chr1 111998276 111998302 chr1,111998276,111998302,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,111998276,111998302 +6 + chr1 111998375 111998491 chr1,111998375,111998491,-,MIRb,SINE,MIR,-44,224,81,111998331,111998571 -6 - chr1 111998491 111998842 chr1,111998491,111998898,+,MLT1J2,LTR,ERVL-MaLR,1,448,0,111998491,111998898 +5 + chr1 112693688 112693699 chr1,112693666,112693699,+,(T)n,Simple_repeat,Simple_repeat,1,33,0,112693666,112693699 -5 + chr1 112716047 112716316 chr1,112716047,112716316,-,MIRb,SINE,MIR,-1,267,1,112716046,112716316 -6 - chr1 112820170 112820531 chr1,112820144,112820531,-,LTR7,LTR,ERV1,-12,438,1,112820132,112820531 +5 - chr1 112820531 112820541 chr1,112820531,112820926,-,HERVH-int,LTR,ERV1,0,7713,7324,112820531,112828249 +2 - chr1 112823653 112823754 chr1,112823541,112825658,-,HERVH-int,LTR,ERV1,-5463,2250,1,112818078,112825658 +3 - chr1 112825513 112825658 chr1,112823541,112825658,-,HERVH-int,LTR,ERV1,-5463,2250,1,112818078,112825658 +4 - chr1 112825660 112825672 chr1,112825660,112826054,-,LTR7,LTR,ERV1,-2,448,1,112825658,112826054 +2 - chr1 112828477 112828511 chr1,112827509,112831188,+,Harlequin-int,LTR,ERV1,1405,5125,-1771,112826105,112832959 -3 + chr1 112840488 112840580 chr1,112840465,112840834,+,AluJr,SINE,Alu,1,298,-14,112840465,112840848 -3 + chr1 112848954 112849050 chr1,112848797,112849076,+,AluSg7,SINE,Alu,1,279,-30,112848797,112849106 -3 + chr1 112850184 112850373 chr1,112850184,112850373,+,MIR,SINE,MIR,28,227,-35,112850157,112850408 +6 + chr1 112850184 112850373 chr1,112850184,112850373,+,MIR,SINE,MIR,28,227,-35,112850157,112850408 -6 + chr1 112850544 112850643 chr1,112850544,112850733,-,MIRb,SINE,MIR,-34,234,32,112850510,112850764 +1 - chr1 112876940 112876984 chr1,112876870,112877143,-,LTR55,LTR,ERVL?,-34,514,244,112876836,112877386 -3 - chr1 112877730 112877871 chr1,112877719,112877878,+,MLT1F1,LTR,ERVL-MaLR,360,526,-43,112877360,112877921 +5 + chr1 112956705 112956908 chr1,112956705,112956908,+,MIR,SINE,MIR,17,237,-31,112956689,112956939 +6 + chr1 112957083 112957260 chr1,112957083,112957260,-,MIRb,SINE,MIR,-41,227,32,112957042,112957291 -6 - chr1 112957313 112957439 chr1,112957313,112957439,-,L2c,LINE,L2,-14,3373,3254,112957299,112960692 -6 - chr1 112957429 112957472 chr1,112957429,112957472,-,L2b,LINE,L2,-10,3365,3324,112957419,112960795 -6 - chr1 112957539 112957625 chr1,112957539,112957625,-,MIRb,SINE,MIR,-71,197,112,112957468,112957736 -6 - chr1 112963972 112964059 chr1,112963966,112964059,+,L1PA4,LINE,L1,6060,6152,-3,112957907,112964062 +2 + chr1 112964059 112964072 chr1,112964059,112964138,-,L1M2,LINE,L1,-1719,4424,4356,112962340,112968493 -5 - chr1 112968044 112968132 chr1,112968044,112968132,+,LTR104_Mam,LTR,Gypsy,661,749,-760,112967384,112968892 +6 + chr1 112968693 112968996 chr1,112968693,112968996,+,AluY,SINE,Alu,3,303,-8,112968691,112969004 +6 + chr1 112969103 112969395 chr1,112969103,112969395,+,AluSp,SINE,Alu,2,292,-21,112969102,112969416 +6 + chr1 112969407 112969707 chr1,112969407,112969707,+,AluSx1,SINE,Alu,2,303,-9,112969406,112969716 +6 + chr1 112969877 112970032 chr1,112969877,112970032,+,L1PA3,LINE,L1,5998,6152,-3,112963880,112970035 +6 + chr1 112970375 112970679 chr1,112970375,112970679,-,AluSq2,SINE,Alu,-16,297,1,112970359,112970679 -6 - chr1 112971580 112971634 chr1,112971580,112971634,+,L2c,LINE,L2,3026,3077,-310,112968555,112971944 +6 + chr1 112971634 112971946 chr1,112971634,112971946,+,AluSz,SINE,Alu,1,310,-2,112971634,112971948 +6 + chr1 112971946 112971973 chr1,112971946,112971973,+,L2c,LINE,L2,3078,3101,-286,112968869,112972259 +6 + chr1 112972035 112972100 chr1,112972035,112972100,+,MamRep434,DNA,TcMar-Tigger,352,421,-5,112971684,112972105 +6 + chr1 112972102 112972399 chr1,112972102,112972399,+,AluY,SINE,Alu,2,295,-16,112972101,112972415 +6 + chr1 112972574 112972875 chr1,112972574,112972875,+,AluSx,SINE,Alu,2,301,-11,112972573,112972886 +6 + chr1 112973081 112973371 chr1,112973081,112973371,+,AluJo,SINE,Alu,3,291,-21,112973079,112973392 +6 + chr1 112973443 112973689 chr1,112973443,112973689,+,AluSx1,SINE,Alu,65,312,0,112973379,112973689 +6 + chr1 112973718 112973748 chr1,112973718,112973748,+,A-rich,Low_complexity,Low_complexity,1,30,0,112973718,112973748 +6 + chr1 112973785 112974041 chr1,112973785,112974041,+,AluJr4,SINE,Alu,48,304,-8,112973738,112974049 +6 + chr1 112974046 112974332 chr1,112974046,112974332,+,AluSx1,SINE,Alu,1,288,-24,112974046,112974356 +6 + chr1 112974336 112974420 chr1,112974336,112974420,+,FLAM_A,SINE,Alu,49,132,-10,112974288,112974430 +6 + chr1 112975410 112975430 chr1,112975410,112975471,-,MIR,SINE,MIR,0,262,200,112975410,112975670 -5 - chr1 112999293 112999468 chr1,112999293,112999468,+,MamRep605,LTR?,LTR?,1,181,-668,112999293,113000136 +6 + chr1 112999475 112999496 chr1,112999475,112999758,+,AluSx,SINE,Alu,14,296,-16,112999462,112999774 +5 + chr1 113011687 113011855 chr1,113011381,113011855,+,L1MC4,LINE,L1,7322,7837,-205,113004060,113012060 -5 + chr1 113011855 113012163 chr1,113011855,113012163,+,AluSx3,SINE,Alu,1,311,0,113011855,113012163 -6 + chr1 113012163 113012265 chr1,113012163,113012265,+,L1MC4,LINE,L1,7838,7923,-119,113004326,113012384 -6 + chr1 113012497 113012514 chr1,113012497,113012514,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,113012497,113012514 -6 + chr1 113013141 113013166 chr1,113013141,113013166,+,(TGTT)n,Simple_repeat,Simple_repeat,1,25,0,113013141,113013166 -6 + chr1 113013541 113013560 chr1,113013541,113013560,-,L3,LINE,CR1,0,4099,4083,113013541,113017642 +6 - chr1 113013560 113013839 chr1,113013560,113013856,+,AluSz,SINE,Alu,1,296,-16,113013560,113013872 -2 + chr1 113047035 113047055 chr1,113047035,113047101,+,LTR85b,LTR,Gypsy?,16,81,-703,113047020,113047804 +5 + chr1 113048423 113048561 chr1,113048286,113048589,+,AluSp,SINE,Alu,1,305,-8,113048286,113048597 -3 + chr1 113823158 113823258 chr1,113822965,113823258,+,L2a,LINE,L2,3147,3426,0,113819819,113823258 +2 + chr1 113829090 113829171 chr1,113829090,113829217,-,L1MC5a,LINE,L1,-1465,4681,4556,113827625,113833772 -5 - chr1 113900825 113901110 chr1,113900825,113901110,+,AluSp,SINE,Alu,1,286,-27,113900825,113901137 +6 + chr1 113924010 113924119 chr1,113924010,113924119,-,L1MB5,LINE,L1,0,6174,6059,113924010,113930177 +6 - chr1 113926866 113927156 chr1,113926866,113927156,-,AluSz,SINE,Alu,-21,291,2,113926845,113927157 +6 - chr1 113927240 113927320 chr1,113927240,113927320,+,L2c,LINE,L2,3245,3337,-50,113923996,113927370 -6 + chr1 113927320 113927630 chr1,113927320,113927630,-,AluSx,SINE,Alu,0,312,1,113927320,113927630 +6 - chr1 113927630 113927697 chr1,113927630,113927697,+,L2c,LINE,L2,3309,3426,0,113924322,113927697 -5 + chr1 113927766 113927933 chr1,113927766,113927933,+,L2a,LINE,L2,3270,3426,0,113924497,113927933 -6 + chr1 114206427 114206685 chr1,114206384,114206881,-,MLT1F2,LTR,ERVL-MaLR,0,560,7,114206384,114206887 +5 - chr1 115102248 115102658 chr1,115101508,115102679,+,L1MEg,LINE,L1,3762,5045,-1101,115097747,115103780 +5 + chr1 115367066 115367377 chr1,115367066,115367377,-,L1MC4a,LINE,L1,-3,7879,7556,115367063,115374932 -6 - chr1 115367377 115367586 chr1,115367377,115367586,-,L1MD2,LINE,L1,-2,6357,6145,115367375,115373730 -6 - chr1 115367586 115367612 chr1,115367586,115367612,+,(GT)n,Simple_repeat,Simple_repeat,1,26,0,115367586,115367612 +6 + chr1 115367612 115367984 chr1,115367612,115367984,-,L1MD2,LINE,L1,-215,6144,5742,115367397,115373725 -6 - chr1 115367984 115368072 chr1,115367984,115368267,-,L1MC4a,LINE,L1,-327,7555,7264,115367657,115375530 -5 - chr1 115919428 115919559 chr1,115919428,115919793,-,MLT1A0,LTR,ERVL-MaLR,0,365,3,115919428,115919795 -4 - chr1 115925646 115925834 chr1,115925646,115925834,+,MamSINE1,SINE,tRNA-RTE,3,192,-98,115925644,115925932 +6 + chr1 116013813 116014024 chr1,116013788,116014024,+,L2,LINE,L2,2270,2526,-893,116011519,116014917 -5 + chr1 116407130 116407195 chr1,116407130,116407204,+,L2c,LINE,L2,2349,2419,-1000,116404782,116408204 -2 + chr1 116411296 116411315 chr1,116411296,116411471,+,MER5B,DNA,hAT-Charlie,1,178,0,116411296,116411471 -2 + chr1 116429062 116429141 chr1,116429062,116429141,+,L2a,LINE,L2,3271,3353,-73,116425792,116429214 -6 + chr1 116433086 116433171 chr1,116432959,116433171,-,MIRb,SINE,MIR,-20,248,27,116432939,116433197 +4 - chr1 116452653 116452932 chr1,116452653,116452950,+,AluSx1,SINE,Alu,1,297,-15,116452653,116452965 -2 + chr1 116463721 116463763 chr1,116463605,116463763,-,MER53,DNA,hAT,0,193,1,116463605,116463763 +5 - chr1 116463867 116463937 chr1,116463867,116463989,+,MIRb,SINE,MIR,119,240,-28,116463749,116464017 -2 + chr1 116909378 116909513 chr1,116909378,116909513,+,MIR3,SINE,MIR,30,184,-24,116909349,116909537 -6 + chr1 117032305 117032336 chr1,117032305,117032418,-,L2c,LINE,L2,0,3387,3272,117032305,117035689 +2 - chr1 117032390 117032418 chr1,117032305,117032418,-,L2c,LINE,L2,0,3387,3272,117032305,117035689 +4 - chr1 117032475 117032521 chr1,117032475,117032570,+,L3,LINE,CR1,3999,4098,-1,117028477,117032571 -1 + chr1 117050167 117050209 chr1,117049970,117050209,+,L3,LINE,CR1,2874,3149,-950,117047097,117051159 -4 + chr1 117050215 117050334 chr1,117050215,117050365,+,Plat_L3,LINE,CR1,2653,2812,-774,117047563,117051139 -2 + chr1 117321124 117321336 chr1,117320801,117321483,+,MER39,LTR,ERV1,3,692,-15,117320799,117321498 +5 + chr1 117364903 117364933 chr1,117364903,117364933,+,(TTATAA)n,Simple_repeat,Simple_repeat,1,31,0,117364903,117364933 -6 + chr1 117493515 117493805 chr1,117493500,117493805,+,AluSz,SINE,Alu,3,307,-5,117493498,117493810 +1 + chr1 117493963 117494191 chr1,117493963,117494191,-,MIR,SINE,MIR,0,262,1,117493963,117494191 -6 - chr1 117494593 117494637 chr1,117494593,117494637,+,L2b,LINE,L2,3322,3365,-10,117491272,117494647 +6 + chr1 117494820 117494938 chr1,117494820,117494938,+,L2b,LINE,L2,3249,3375,0,117491572,117494938 +6 + chr1 117596832 117596871 chr1,117596750,117596871,-,MIR,SINE,MIR,0,262,122,117596750,117596992 +5 - chr1 117604624 117604663 chr1,117603583,117604663,+,L1ME3,LINE,L1,5014,6154,-8,117598570,117604671 -5 + chr1 117603999 117604399 chr1,117603583,117604663,+,L1ME3,LINE,L1,5014,6154,-8,117598570,117604671 -5 + chr1 119062854 119062897 chr1,119062545,119062897,+,THE1A,LTR,ERVL-MaLR,1,355,0,119062545,119062897 +2 + chr1 119062897 119064486 chr1,119062897,119064486,+,THE1A-int,LTR,ERVL-MaLR,1,1580,0,119062897,119064486 +6 + chr1 119064486 119064785 chr1,119064486,119064831,+,THE1A,LTR,ERVL-MaLR,1,355,0,119064486,119064831 +5 + chr1 119141976 119142176 chr1,119141976,119142176,-,L2c,LINE,L2,-955,2464,2247,119141021,119144422 -6 - chr1 119146664 119146740 chr1,119146664,119146740,-,MER117,DNA,hAT-Charlie,-105,92,4,119146559,119146743 -6 - chr1 119146980 119147069 chr1,119146980,119147297,-,LTR33,LTR,ERVL,-208,307,27,119146772,119147323 -5 - chr1 119150565 119150746 chr1,119150457,119150757,+,MLT1D,LTR,ERVL-MaLR,73,438,-67,119150385,119150824 +3 + chr1 119150793 119150934 chr1,119150786,119150948,-,AluSx,SINE,Alu,-27,285,121,119150759,119151068 -5 - chr1 119181390 119181461 chr1,119181236,119182807,-,HERV17-int,LTR,ERV1,-7086,1540,1,119174150,119182807 -3 - chr1 119181978 119182807 chr1,119181236,119182807,-,HERV17-int,LTR,ERV1,-7086,1540,1,119174150,119182807 -2 - chr1 119182807 119183271 chr1,119182807,119183271,-,LTR17,LTR,ERV1,0,780,253,119182807,119183523 -6 - chr1 119183271 119183757 chr1,119183271,119183757,-,L1M3,LINE,L1,-730,5582,5101,119182541,119188857 -6 - chr1 119183757 119183793 chr1,119183757,119183793,-,U2,snRNA,snRNA,-152,36,1,119183605,119183793 -6 - chr1 119183793 119183823 chr1,119183793,119183948,-,L1M3,LINE,L1,-730,5100,4946,119183063,119188893 -5 - chr1 119260265 119260431 chr1,119259944,119260431,-,MLT1D,LTR,ERVL-MaLR,0,505,3,119259944,119260433 +5 - chr1 119261447 119261462 chr1,119261224,119261462,-,MamSINE1,SINE,tRNA-RTE,-53,237,8,119261171,119261469 -2 - chr1 119275188 119275274 chr1,119275187,119275274,-,MER5B,DNA,hAT-Charlie,-2,176,90,119275185,119275363 -2 - chr1 119328189 119328287 chr1,119328189,119328339,+,MamGypLTR3,LTR,Gypsy,724,952,-29,119327466,119328368 +1 + chr1 119355991 119356104 chr1,119355789,119356104,-,AluJb,SINE,Alu,0,312,1,119355789,119356104 -2 - chr1 119370084 119370256 chr1,119369935,119370256,-,MLT1I,LTR,ERVL-MaLR,-20,391,70,119369915,119370325 -2 - chr1 119597702 119598649 chr1,119597458,119598649,+,L1MB7,LINE,L1,4948,6184,0,119592511,119598649 -5 + chr1 119598749 119598861 chr1,119598749,119598861,-,LTR16,LTR,ERVL,-324,114,1,119598425,119598861 +6 - chr1 119599089 119599271 chr1,119599089,119599625,+,L1M5,LINE,L1,2646,3188,-2958,119596444,119602583 -1 + chr1 119909272 119909655 chr1,119909272,119909655,-,L1ME3,LINE,L1,-3,6159,5750,119909269,119915404 +6 - chr1 119909847 119910100 chr1,119909847,119910100,+,LTR33,LTR,ERVL,18,290,-225,119909830,119910325 -6 + chr1 119910100 119910440 chr1,119910100,119910440,-,MER1B,DNA,hAT-Charlie,0,339,5,119910100,119910444 +6 - chr1 119910440 119910613 chr1,119910440,119910663,+,LTR33,LTR,ERVL,291,515,0,119910150,119910663 -1 + chr1 120076627 120076652 chr1,120076627,120076652,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,120076627,120076652 +6 + chr1 120953397 120953426 chr1,120953397,120953426,+,(TTGT)n,Simple_repeat,Simple_repeat,1,29,0,120953397,120953426 +6 + chr1 121001000 121001060 chr1,121000987,121001060,-,tRNA-Glu-GAA,tRNA,tRNA,-3,72,1,121000984,121001060 -2 - chr1 121008411 121008499 chr1,121008365,121008505,-,U1,snRNA,snRNA,-14,151,3,121008351,121008507 -3 - chr1 121052026 121052077 chr1,121051926,121052077,-,L2,LINE,L2,-797,2622,2456,121051129,121054532 +4 - chr1 121090316 121090724 chr1,121090316,121090724,-,L1ME3A,LINE,L1,-12,6161,5681,121090304,121096404 +6 - chr1 121090815 121091130 chr1,121090815,121091130,-,L1ME3A,LINE,L1,-751,5422,5083,121090064,121096212 +6 - chr1 121091319 121091709 chr1,121091319,121091709,-,L1M5,LINE,L1,-3164,2982,2535,121088155,121094243 +6 - chr1 121092205 121092728 chr1,121092205,121092728,-,MLT1E1A,LTR,ERVL-MaLR,0,680,3,121092205,121092730 +6 - chr1 121120031 121120071 chr1,121119918,121120073,-,MIRb,SINE,MIR,-5,263,92,121119913,121120164 -3 - chr1 121146803 121146826 chr1,121146803,121146915,-,LTR88a,LTR,Gypsy?,-405,411,280,121146398,121147194 -5 - chr1 121360156 121360176 chr1,121359845,121360176,+,LTR12,LTR,ERV1,3,445,-222,121359843,121360398 -5 + chr1 121396754 121396824 chr1,121396746,121396824,+,(CGC)n,Simple_repeat,Simple_repeat,1,78,0,121396746,121396824 +1 + chr1 121397592 121397658 chr1,121397592,121397658,-,MIR3,SINE,MIR,-47,161,95,121397545,121397752 +6 - chr1 121398665 121398715 chr1,121398522,121398715,-,MER30B,DNA,hAT-Charlie,0,190,1,121398522,121398715 +4 - chr1 121412719 121412752 chr1,121412533,121413137,-,L2c,LINE,L2,-725,2694,2067,121411808,121415203 -1 - chr1 121425064 121425182 chr1,121424855,121425182,-,AluJo,SINE,Alu,-7,305,1,121424848,121425182 -2 - chr1 121427964 121428021 chr1,121427869,121428021,+,L1M6,LINE,L1,48,218,-6278,121427822,121434299 +2 + chr1 121429030 121429274 chr1,121429007,121429301,-,AluSc,SINE,Alu,-11,298,1,121428996,121429301 -5 - chr1 121460019 121460080 chr1,121459968,121460080,+,MLT1J,LTR,ERVL-MaLR,80,201,-311,121459889,121460391 +2 + chr1 121460497 121460616 chr1,121460497,121460616,+,MLT2F,LTR,ERVL,543,663,0,121459955,121460616 +6 + chr1 121461337 121461401 chr1,121461337,121461401,-,MIRc,SINE,MIR,-34,234,171,121461303,121461571 -6 - chr1 121461418 121461601 chr1,121461418,121461601,+,MIR,SINE,MIR,18,193,-69,121461401,121461670 +6 + chr1 121461628 121461764 chr1,121461628,121461764,+,L2a,LINE,L2,3246,3424,-2,121458383,121461766 +6 + chr1 121462415 121462458 chr1,121462415,121462458,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,44,0,121462415,121462458 +6 + chr1 121462658 121462691 chr1,121462658,121462691,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,121462658,121462691 +6 + chr1 121462866 121463101 chr1,121462866,121463101,-,MIR,SINE,MIR,-11,251,2,121462855,121463102 -6 - chr1 121509741 121509804 chr1,121508561,121509827,+,L1PA14,LINE,L1,4860,6161,0,121503702,121509827 -3 + chr1 121510356 121510383 chr1,121510042,121510491,+,LTR12_,LTR,ERV1,1,518,-170,121510042,121510661 -1 + chr1 143499301 143499367 chr1,143499301,143499367,-,MIR3,SINE,MIR,-47,161,95,143499254,143499461 +6 - chr1 143500371 143500421 chr1,143500228,143500421,-,MER30B,DNA,hAT-Charlie,0,190,1,143500228,143500421 +4 - chr1 143737067 143737096 chr1,143737067,143737096,+,(TTGT)n,Simple_repeat,Simple_repeat,1,29,0,143737067,143737096 +6 + chr1 143737131 143737245 chr1,143737131,143737245,-,L1M5,LINE,L1,-383,5740,5622,143736748,143742866 -6 - chr1 143737265 143737776 chr1,143737265,143737776,-,L1M4c,LINE,L1,-4195,2530,1915,143733070,143739690 -6 - chr1 143737878 143737923 chr1,143737878,143737923,+,A-rich,Low_complexity,Low_complexity,1,47,0,143737878,143737923 +6 + chr1 143739011 143739111 chr1,143739011,143739111,-,L2,LINE,L2,-804,2615,2514,143738207,143741624 -6 - chr1 143739151 143739506 chr1,143739151,143739742,+,LTR49,LTR,ERV1,1,595,0,143739151,143739742 +5 + chr1 143792723 143792791 chr1,143792723,143792791,-,tRNA-Glu-GAA,tRNA,tRNA,-3,72,5,143792720,143792795 -6 - chr1 143793273 143793437 chr1,143793273,143793437,+,L2,LINE,L2,2456,2620,-799,143790818,143794236 +6 + chr1 143794577 143794808 chr1,143794577,143794808,-,MLT1A0,LTR,ERVL-MaLR,0,365,122,143794577,143794929 -6 - chr1 143794851 143795344 chr1,143794851,143795344,+,L1M5,LINE,L1,4697,5247,-899,143790155,143796243 +6 + chr1 143796519 143797108 chr1,143796519,143797134,+,MER49,LTR,ERV1,307,923,0,143796213,143797134 +5 + chr1 143877758 143878166 chr1,143877758,143878166,-,L1ME3A,LINE,L1,-12,6161,5681,143877746,143883846 +6 - chr1 143878257 143878567 chr1,143878257,143878567,-,L1ME3A,LINE,L1,-751,5422,5089,143877506,143883655 +6 - chr1 143878761 143879150 chr1,143878761,143879150,-,L1M5,LINE,L1,-3164,2982,2535,143875597,143881684 +6 - chr1 143879646 143880169 chr1,143879646,143880169,-,MLT1E1A,LTR,ERVL-MaLR,0,680,3,143879646,143880171 +6 - chr1 143907386 143907426 chr1,143907273,143907428,-,MIRb,SINE,MIR,-5,263,92,143907268,143907519 -3 - chr1 143934753 143934776 chr1,143934753,143934865,-,LTR88a,LTR,Gypsy?,-405,411,297,143934348,143935161 -5 - chr1 144227256 144227379 chr1,144227256,144227392,-,MLT1J2,LTR,ERVL-MaLR,-238,210,67,144227018,144227458 +2 - chr1 144245027 144245149 chr1,144244828,144245149,-,AluSc5,SINE,Alu,0,309,1,144244828,144245149 +5 - chr1 144250247 144250288 chr1,144250247,144250810,+,TAR1,Satellite,telo,1503,2068,-43,144248745,144250853 -1 + chr1 144630744 144630810 chr1,144630507,144630810,-,AluSg,SINE,Alu,-10,300,1,144630497,144630810 +4 - chr1 144630810 144630862 chr1,144630810,144630938,+,L1MEd,LINE,L1,1911,2018,-4224,144628900,144635162 -2 + chr1 144641615 144641681 chr1,144641615,144641681,+,MIR3,SINE,MIR,95,161,-47,144641521,144641728 +6 + chr1 144641615 144641669 chr1,144641615,144641681,+,MIR3,SINE,MIR,95,161,-47,144641521,144641728 -2 + chr1 144919881 144919902 chr1,144919881,144920212,-,LTR12,LTR,ERV1,-222,445,3,144919659,144920214 -5 - chr1 145164099 145164687 chr1,145164072,145164687,-,MER49,LTR,ERV1,0,923,307,145164072,145164993 +5 - chr1 145165862 145166355 chr1,145165862,145166355,-,L1M5,LINE,L1,-899,5247,4697,145164963,145171051 +6 - chr1 145166398 145166629 chr1,145166398,145166629,+,MLT1A0,LTR,ERVL-MaLR,122,365,0,145166277,145166629 -6 + chr1 145167769 145167933 chr1,145167769,145167933,-,L2,LINE,L2,-799,2620,2456,145166970,145170388 +6 - chr1 145168415 145168483 chr1,145168415,145168483,+,tRNA-Glu-GAA,tRNA,tRNA,5,72,-3,145168411,145168486 -5 + chr1 145169527 145169615 chr1,145169520,145169660,+,U1,snRNA,snRNA,3,151,-14,145169518,145169674 -3 + chr1 145215874 145215920 chr1,145215874,145215920,+,(GAG)n,Simple_repeat,Simple_repeat,1,46,0,145215874,145215920 -6 + chr1 145281116 145281281 chr1,145281115,145281281,+,U1,snRNA,snRNA,1,165,0,145281115,145281281 +1 + chr1 145932084 145932159 chr1,145932062,145932359,-,AluSg,SINE,Alu,-16,294,1,145932046,145932359 -3 - chr1 145934292 145934390 chr1,145934292,145934587,+,AluY,SINE,Alu,2,295,-16,145934291,145934603 +4 + chr1 145937357 145937458 chr1,145937193,145937458,-,AluSz6,SINE,Alu,-30,282,1,145937163,145937458 -2 - chr1 145939824 145939938 chr1,145939626,145939938,-,AluJb,SINE,Alu,0,312,1,145939626,145939938 -2 - chr1 145939973 145940066 chr1,145939973,145940260,-,AluSq2,SINE,Alu,-20,293,6,145939953,145940265 -4 - chr1 145941112 145941222 chr1,145941058,145941222,-,Tigger19a,DNA,TcMar-Tigger,-132,191,30,145940926,145941251 -1 - chr1 145941905 145942182 chr1,145941889,145942182,-,AluY,SINE,Alu,-18,293,2,145941871,145942183 -5 - chr1 145947097 145947119 chr1,145947024,145947119,-,MIR3,SINE,MIR,-3,205,111,145947021,145947229 -2 - chr1 145948785 145949052 chr1,145948682,145949147,+,LTR40c,LTR,ERVL,7,465,0,145948676,145949147 +5 + chr1 145950189 145950335 chr1,145950184,145950361,-,LTR16B,LTR,ERVL,-4,459,266,145950180,145950626 -5 - chr1 145958361 145958438 chr1,145958325,145958445,-,MIR3,SINE,MIR,-40,168,54,145958285,145958498 -3 - chr1 146052640 146052756 chr1,146052640,146052756,-,Charlie4a,DNA,hAT-Charlie,-4,504,386,146052636,146053141 -6 - chr1 146052798 146052836 chr1,146052798,146052836,+,(AT)n,Simple_repeat,Simple_repeat,1,38,0,146052798,146052836 +6 + chr1 146057907 146057988 chr1,146057907,146058118,+,HAL1,LINE,L1,2105,2361,-146,146055803,146058264 +4 + chr1 146058335 146058461 chr1,146058335,146058708,+,L1ME3Cz,LINE,L1,235,549,-2228,146058101,146060936 +5 + chr1 146058558 146058708 chr1,146058335,146058708,+,L1ME3Cz,LINE,L1,235,549,-2228,146058101,146060936 +5 + chr1 146058780 146058899 chr1,146058780,146058899,-,MIR,SINE,MIR,-26,236,104,146058754,146059002 -5 - chr1 146061495 146061948 chr1,146061296,146062056,-,L1MEc,LINE,L1,-5522,1756,830,146055774,146062885 -5 - chr1 146235983 146236001 chr1,146235983,146236001,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,146235983,146236001 +6 + chr1 146236001 146236176 chr1,146236001,146236176,+,MLT1C,LTR,ERVL-MaLR,270,466,-1,146235732,146236177 +6 + chr1 146236176 146236297 chr1,146236176,146236297,-,MER91A,DNA,hAT-Tip100,-70,126,1,146236106,146236297 -6 - chr1 146237050 146237337 chr1,146237050,146237337,+,AluJr4,SINE,Alu,7,305,-7,146237044,146237344 +6 + chr1 146237337 146237367 chr1,146237337,146237367,+,(CAA)n,Simple_repeat,Simple_repeat,1,30,0,146237337,146237367 +6 + chr1 146237428 146237499 chr1,146237428,146237499,+,GA-rich,Low_complexity,Low_complexity,1,73,0,146237428,146237499 +6 + chr1 146515258 146515306 chr1,146515258,146515306,+,MamTip2,DNA,hAT-Tip100,137,181,-124,146515122,146515430 +6 + chr1 146516383 146516446 chr1,146516383,146516510,+,MIRb,SINE,MIR,32,165,-103,146516352,146516613 +4 + chr1 146524728 146525013 chr1,146524716,146525013,-,AluJr,SINE,Alu,-22,290,2,146524694,146525014 -2 - chr1 146525040 146525232 chr1,146525040,146525232,+,MIR,SINE,MIR,31,217,-45,146525010,146525277 +6 + chr1 146525272 146525289 chr1,146525272,146525656,-,L3,LINE,CR1,-388,3711,3281,146524884,146528936 -5 - chr1 147001933 147002109 chr1,147001933,147002109,+,MIRb,SINE,MIR,40,240,-28,147001894,147002137 -6 + chr1 147002214 147002332 chr1,147002214,147002480,-,L1ME3Cz,LINE,L1,-489,508,235,147001725,147002714 +5 - chr1 147002429 147002480 chr1,147002214,147002480,-,L1ME3Cz,LINE,L1,-489,508,235,147001725,147002714 +5 - chr1 147002897 147002977 chr1,147002775,147002977,-,HAL1,LINE,L1,-155,2352,2105,147002620,147005081 +4 - chr1 147173020 147173299 chr1,147173020,147173299,+,AluSc,SINE,Alu,1,279,-30,147173020,147173329 +1 + chr1 147174494 147174565 chr1,147174494,147174565,+,Tigger19a,DNA,TcMar-Tigger,225,293,-30,147174270,147174595 +6 + chr1 147175162 147175205 chr1,147175162,147175356,+,L1ME1,LINE,L1,5572,5759,-420,147169591,147175776 +5 + chr1 147175602 147175747 chr1,147175356,147175747,+,THE1D,LTR,ERVL-MaLR,1,381,0,147175356,147175747 +1 + chr1 147175747 147176118 chr1,147175747,147176118,+,L1ME1,LINE,L1,5760,6167,-12,147169988,147176130 +6 + chr1 147176333 147176443 chr1,147176333,147176443,-,MIRc,SINE,MIR,-31,237,131,147176302,147176573 -6 - chr1 147176770 147176872 chr1,147176770,147176872,+,MIR3,SINE,MIR,68,169,-39,147176703,147176911 +6 + chr1 147176876 147177740 chr1,147176876,147177857,+,L1MC3,LINE,L1,6527,7583,-202,147170350,147178059 +5 + chr1 147209622 147209771 chr1,147209621,147209771,+,L2b,LINE,L2,3047,3198,-177,147206575,147209948 +2 + chr1 147209790 147209858 chr1,147209790,147209858,-,MIR3,SINE,MIR,-3,205,138,147209787,147209995 -6 - chr1 147210013 147210219 chr1,147210013,147210219,-,MIRb,SINE,MIR,-10,258,29,147210003,147210247 -5 - chr1 147210553 147210768 chr1,147210553,147210768,+,MIR,SINE,MIR,16,252,-10,147210538,147210778 +6 + chr1 147258978 147259205 chr1,147258978,147259205,-,L1ME4c,LINE,L1,-321,509,321,147258657,147259525 +6 - chr1 147259224 147259391 chr1,147259224,147259391,+,L2,LINE,L2,1979,2157,-1262,147257246,147260653 -6 + chr1 147259393 147259568 chr1,147259393,147259568,+,MIRb,SINE,MIR,52,254,-14,147259342,147259582 -6 + chr1 147259959 147260325 chr1,147259959,147260325,-,L1MC1,LINE,L1,0,6333,5993,147259959,147266317 +6 - chr1 147382200 147382299 chr1,147382200,147382299,-,L1MA4,LINE,L1,-7,6293,6195,147382193,147388493 +6 - chr1 147383704 147384088 chr1,147383704,147384088,+,CR1_Mam,LINE,CR1,1437,1836,-368,147382268,147384456 -6 + chr1 147384374 147384496 chr1,147384374,147384496,+,X7C_LINE,LINE,CR1,70,184,-52,147384305,147384548 -6 + chr1 147408590 147408689 chr1,147408540,147408781,+,MSTB,LTR,ERVL-MaLR,185,426,0,147408356,147408781 -3 + chr1 147517443 147517875 chr1,147517442,147518143,-,LTR12_,LTR,ERV1,0,688,2,147517442,147518144 +1 - chr1 147788608 147788709 chr1,147788509,147788709,-,MIR,SINE,MIR,-25,237,28,147788484,147788736 -2 - chr1 147788720 147788837 chr1,147788720,147788837,+,L3,LINE,CR1,3878,4015,-84,147784843,147788921 +6 + chr1 147788896 147788953 chr1,147788896,147789011,+,GA-rich,Low_complexity,Low_complexity,1,116,0,147788896,147789011 +5 + chr1 147996588 147996633 chr1,147996565,147996633,-,L3,LINE,CR1,-1818,2281,2208,147994747,147998840 +4 - chr1 148011058 148011129 chr1,148011058,148011129,+,tRNA-Gly-GGG,tRNA,tRNA,1,71,-3,148011058,148011132 -6 + chr1 148021850 148021998 chr1,148021721,148022256,-,L1MEh,LINE,L1,-1637,598,21,148020084,148022276 -1 - chr1 148025777 148025931 chr1,148025579,148025974,+,MLT1B,LTR,ERVL-MaLR,1,389,-1,148025579,148025975 +5 + chr1 148159352 148159425 chr1,148159352,148159425,-,MIRb,SINE,MIR,0,268,174,148159352,148159598 +6 - chr1 148159519 148159815 chr1,148159519,148159815,+,AluSc8,SINE,Alu,1,296,-15,148159519,148159830 -6 + chr1 148161003 148161158 chr1,148161003,148161158,-,U1,snRNA,snRNA,-10,155,4,148160993,148161161 +6 - chr1 148162210 148162280 chr1,148162210,148162280,-,tRNA-Glu-GAA,tRNA,tRNA,-4,71,2,148162206,148162281 +6 - chr1 148163289 148163492 chr1,148163289,148163492,+,MIRc,SINE,MIR,15,267,-1,148163275,148163493 +5 + chr1 148163816 148163866 chr1,148163816,148164137,+,L2a,LINE,L2,3094,3426,0,148160723,148164137 +5 + chr1 148164261 148164473 chr1,148164255,148164473,-,LTR16E1,LTR,ERVL,-4,534,312,148164251,148164784 -2 - chr1 148164397 148164463 chr1,148164255,148164473,-,LTR16E1,LTR,ERVL,-4,534,312,148164251,148164784 +3 - chr1 148174250 148174451 chr1,148174066,148174451,+,MLT1H1-int,LTR,ERVL-MaLR,1026,1473,-16,148173041,148174467 +2 + chr1 148174288 148174393 chr1,148174066,148174451,+,MLT1H1-int,LTR,ERVL-MaLR,1026,1473,-16,148173041,148174467 -3 + chr1 148174464 148174928 chr1,148174464,148174977,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,148174464,148174977 +5 + chr1 148186228 148186535 chr1,148186228,148186535,+,AluSp,SINE,Alu,1,308,-5,148186228,148186540 +6 + chr1 148199995 148200023 chr1,148199855,148200023,+,AluJr,SINE,Alu,1,166,-146,148199855,148200169 -5 + chr1 148200053 148200094 chr1,148200053,148200117,+,7SLRNA,srpRNA,srpRNA,257,320,0,148199797,148200117 -2 + chr1 148201408 148201478 chr1,148201189,148201570,+,MSTA,LTR,ERVL-MaLR,1,428,0,148201189,148201570 -3 + chr1 148206352 148206412 chr1,148206352,148206412,-,MIRc,SINE,MIR,-14,254,191,148206338,148206602 +6 - chr1 148206400 148206511 chr1,148206400,148206511,-,L2c,LINE,L2,0,3387,3286,148206400,148209796 +6 - chr1 148207843 148207884 chr1,148207725,148208109,+,L3,LINE,CR1,3280,3710,-389,148204446,148208498 -5 + chr1 148207934 148207963 chr1,148207725,148208109,+,L3,LINE,CR1,3280,3710,-389,148204446,148208498 -5 + chr1 148208094 148208109 chr1,148207725,148208109,+,L3,LINE,CR1,3280,3710,-389,148204446,148208498 -5 + chr1 148208149 148208341 chr1,148208149,148208341,-,MIR,SINE,MIR,-45,217,31,148208104,148208371 +5 - chr1 148208368 148208654 chr1,148208368,148208679,+,AluJr,SINE,Alu,2,304,-8,148208367,148208687 -5 + chr1 148216937 148216999 chr1,148216872,148216999,-,MIRb,SINE,MIR,-103,165,32,148216769,148217030 +5 - chr1 148218076 148218124 chr1,148218076,148218124,-,MamTip2,DNA,hAT-Tip100,-124,181,137,148217952,148218260 +6 - chr1 148225086 148225259 chr1,148225086,148225259,+,MER63A,DNA,hAT-Blackjack,8,209,-1,148225079,148225260 -6 + chr1 148226647 148226675 chr1,148226647,148226675,+,(GAAA)n,Simple_repeat,Simple_repeat,1,28,0,148226647,148226675 -6 + chr1 148227988 148228070 chr1,148227826,148228116,+,L1ME3G,LINE,L1,573,923,-1,148227254,148228117 -1 + chr1 148271884 148272035 chr1,148271838,148272232,-,MLT1B,LTR,ERVL-MaLR,-1,389,1,148271837,148272232 +5 - chr1 148290890 148290954 chr1,148290769,148290954,-,L2a,LINE,L2,-1,3425,3216,148290768,148294169 +5 - chr1 148290954 148291301 chr1,148290954,148291449,-,MLT2B4,LTR,ERVL,0,556,4,148290954,148291452 +2 - chr1 148295180 148295296 chr1,148295011,148295712,-,SATR1,Satellite,Satellite,-1,748,1,148295010,148295712 -1 - chr1 148296571 148296596 chr1,148296571,148296596,+,(CCT)n,Simple_repeat,Simple_repeat,1,25,0,148296571,148296596 +6 + chr1 148297112 148297460 chr1,148297112,148297460,-,MLT1A0,LTR,ERVL-MaLR,-20,485,13,148297092,148297472 -1 - chr1 148297129 148297271 chr1,148297112,148297460,-,MLT1A0,LTR,ERVL-MaLR,-20,485,13,148297092,148297472 +1 - chr1 148344496 148344617 chr1,148344496,148344617,+,L2b,LINE,L2,3251,3375,0,148341246,148344617 +6 + chr1 148358513 148358625 chr1,148358513,148358625,-,L1ME4a,LINE,L1,-44,6080,5969,148358469,148364593 +6 - chr1 148358627 148358686 chr1,148358627,148358801,-,HAL1b,LINE,L1,-13,2408,2226,148358614,148361026 +1 - chr1 148362995 148363077 chr1,148362937,148363077,-,Charlie4a,DNA,hAT-Charlie,-4,504,362,148362933,148363438 +5 - chr1 148369318 148369350 chr1,148369020,148369350,-,PRIMA4-int,LTR,ERV1,-3110,5160,4838,148365910,148374187 +4 - chr1 148369350 148369426 chr1,148369350,148369611,+,AluJo,SINE,Alu,44,288,-24,148369307,148369635 -2 + chr1 148378056 148378185 chr1,148377892,148378185,+,AluJo,SINE,Alu,1,292,-20,148377892,148378205 -4 + chr1 148378333 148378471 chr1,148378333,148378471,+,AluJo,SINE,Alu,1,143,-169,148378333,148378640 -6 + chr1 148378605 148378904 chr1,148378605,148378904,+,AluSc,SINE,Alu,1,298,-11,148378605,148378915 -6 + chr1 148378913 148378989 chr1,148378913,148378989,-,tRNA-Asn-AAC,tRNA,tRNA,-1,76,1,148378912,148378989 +6 - chr1 148420820 148420937 chr1,148420796,148421094,-,AluJb,SINE,Alu,-14,298,1,148420782,148421094 -3 - chr1 148429155 148429361 chr1,148429155,148429371,+,AluSx,SINE,Alu,95,310,-2,148429061,148429373 +5 + chr1 148432959 148433382 chr1,148432841,148433382,-,MER66C,LTR,ERV1,0,555,1,148432841,148433382 +5 - chr1 148433382 148433643 chr1,148433382,148433731,-,MER66-int,LTR,ERV1,0,6676,6327,148433382,148440057 +2 - chr1 148434774 148434855 chr1,148434582,148434855,-,MER66-int,LTR,ERV1,-1940,4736,4548,148432642,148439402 +5 - chr1 148435176 148435293 chr1,148435176,148435293,-,Tigger2,DNA,TcMar-Tigger,-261,2457,2334,148434915,148437626 +6 - chr1 149006309 149006392 chr1,149006265,149006392,-,MLT1H2,LTR,ERVL-MaLR,0,548,373,149006265,149006764 +5 - chr1 149050820 149051172 chr1,149050621,149051172,-,L1MEc,LINE,L1,-5522,1754,1093,149045099,149052264 -2 - chr1 149051254 149051273 chr1,149051254,149051381,-,L1MEc,LINE,L1,-5422,978,828,149045832,149052208 -5 - chr1 149250658 149250781 chr1,149250658,149250781,+,AluJr,SINE,Alu,27,127,-185,149250632,149250966 +6 + chr1 149250781 149251013 chr1,149250781,149251049,+,AluSp,SINE,Alu,34,303,-10,149250748,149251059 +5 + chr1 149264252 149264278 chr1,149264250,149264278,+,A-rich,Low_complexity,Low_complexity,1,28,0,149264250,149264278 +1 + chr1 149264364 149264377 chr1,149264364,149264377,+,(TTTG)n,Simple_repeat,Simple_repeat,1,53,0,149264364,149264377 +6 + chr1 149264379 149264412 chr1,149264379,149264412,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,149264379,149264412 +6 + chr1 149264781 149264811 chr1,149264781,149264811,+,(AAT)n,Simple_repeat,Simple_repeat,1,31,0,149264781,149264811 +6 + chr1 149607307 149607318 chr1,149607263,149607318,+,(CCT)n,Simple_repeat,Simple_repeat,1,55,0,149607263,149607318 +1 + chr1 149647558 149647587 chr1,149647558,149647587,+,(TTGT)n,Simple_repeat,Simple_repeat,1,29,0,149647558,149647587 +6 + chr1 149647621 149647765 chr1,149647621,149647765,-,L1M5,LINE,L1,-382,5741,5593,149647239,149653357 -5 - chr1 149647752 149648261 chr1,149647752,149648261,-,L1M4c,LINE,L1,-4193,2270,1700,149643559,149649960 -6 - chr1 149648363 149648388 chr1,149648363,149648408,+,A-rich,Low_complexity,Low_complexity,1,47,0,149648363,149648408 +5 + chr1 149661302 149661576 chr1,149661278,149661576,-,AluJb,SINE,Alu,-14,298,1,149661264,149661576 -2 - chr1 149661576 149661606 chr1,149661576,149661661,-,L1MEf,LINE,L1,-6125,515,457,149655451,149662117 -5 - chr1 149675331 149675392 chr1,149675272,149675392,-,Tigger2,DNA,TcMar-Tigger,-261,2457,2334,149675011,149677725 -2 - chr1 149678368 149678427 chr1,149678368,149678427,-,MER126,DNA,DNA,-9,440,379,149678359,149678805 -6 - chr1 149747671 149747728 chr1,149747571,149747728,-,L2,LINE,L2,-797,2622,2450,149746774,149750177 +4 - chr1 149785686 149786094 chr1,149785686,149786094,-,L1ME3A,LINE,L1,-12,6161,5681,149785674,149791774 +6 - chr1 149786185 149786504 chr1,149786185,149786504,-,L1ME3A,LINE,L1,-751,5422,5080,149785434,149791583 +6 - chr1 149786689 149787079 chr1,149786689,149787079,-,L1M5,LINE,L1,-3164,2982,2535,149783525,149789613 +6 - chr1 149787575 149788098 chr1,149787575,149788098,-,MLT1E1A,LTR,ERVL-MaLR,0,680,3,149787575,149788100 +6 - chr1 149844801 149844820 chr1,149844801,149844820,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,149844801,149844820 -6 + chr1 149845816 149846031 chr1,149845289,149846031,-,L2a,LINE,L2,-60,3366,2364,149845229,149848394 -1 - chr1 149845289 149846031 chr1,149845289,149846031,-,L2a,LINE,L2,-60,3366,2364,149845229,149848394 +1 - chr1 149846044 149846119 chr1,149846044,149846119,-,L1MEh,LINE,L1,-792,1443,1369,149845252,149847487 -6 - chr1 149846044 149846119 chr1,149846044,149846119,-,L1MEh,LINE,L1,-792,1443,1369,149845252,149847487 +6 - chr1 149846525 149846865 chr1,149846525,149846865,-,L1MC4,LINE,L1,0,8042,7690,149846525,149854554 +6 - chr1 149846869 149847338 chr1,149846869,149847338,-,MLT1D,LTR,ERVL-MaLR,0,505,1,149846869,149847338 +6 - chr1 149847350 149847527 chr1,149847350,149847527,+,MLT1C,LTR,ERVL-MaLR,1,202,-265,149847350,149847792 -6 + chr1 149847527 149847824 chr1,149847527,149847824,+,AluSq,SINE,Alu,2,302,-11,149847526,149847835 -6 + chr1 149847824 149848066 chr1,149847824,149848066,+,MLT1C,LTR,ERVL-MaLR,203,467,0,149847622,149848066 -6 + chr1 149848932 149849024 chr1,149848932,149849212,+,L2,LINE,L2,2365,2677,-742,149846568,149849954 -1 + chr1 149861857 149862063 chr1,149861857,149862063,-,MER2,DNA,TcMar-Tigger,0,345,140,149861857,149862202 -6 - chr1 150255201 150255500 chr1,150255201,150255500,-,AluSz6,SINE,Alu,0,312,6,150255201,150255505 +6 - chr1 150515964 150516062 chr1,150515964,150516257,+,AluSg7,SINE,Alu,1,290,-19,150515964,150516276 +4 + chr1 150517773 150517790 chr1,150517439,150517790,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,150517439,150517790 +2 + chr1 150518019 150518032 chr1,150518019,150518070,+,L2,LINE,L2,2414,2467,-952,150515606,150519022 +5 + chr1 150548576 150548721 chr1,150548576,150548721,-,MIRb,SINE,MIR,-103,165,23,150548473,150548743 +6 - chr1 150573669 150573821 chr1,150573669,150573933,+,AluSz6,SINE,Alu,1,301,-11,150573669,150573944 -2 + chr1 150574124 150574278 chr1,150573971,150574278,+,AluSp,SINE,Alu,1,308,-5,150573971,150574283 -4 + chr1 150965255 150965296 chr1,150965255,150965296,+,(ATTTTTT)n,Simple_repeat,Simple_repeat,1,43,0,150965255,150965296 +6 + chr1 150965456 150965494 chr1,150965456,150965494,+,G-rich,Low_complexity,Low_complexity,1,38,0,150965456,150965494 +6 + chr1 151130075 151130219 chr1,151130065,151130219,-,MIRb,SINE,MIR,-42,226,61,151130023,151130279 +5 - chr1 151131011 151131118 chr1,151131011,151131118,-,MIRc,SINE,MIR,-112,156,45,151130899,151131162 +6 - chr1 151280024 151280201 chr1,151280000,151280201,-,MIRb,SINE,MIR,-36,232,37,151279964,151280237 +5 - chr1 151340648 151340757 chr1,151340467,151340757,+,L1ME3F,LINE,L1,5915,6231,-12,151334553,151340769 +1 + chr1 151341864 151341904 chr1,151341437,151341904,+,MLT1K,LTR,ERVL-MaLR,104,595,0,151341334,151341904 +2 + chr1 151612251 151612321 chr1,151612251,151612321,+,(CGG)n,Simple_repeat,Simple_repeat,1,73,0,151612251,151612321 -6 + chr1 151701026 151701138 chr1,151701003,151701297,-,L2a,LINE,L2,-600,2819,2485,151700403,151703781 -1 - chr1 151755541 151755826 chr1,151755433,151756638,+,ERV3-16A3_I-int,LTR,ERVL,3670,4935,-291,151751764,151756929 +1 + chr1 151765709 151765750 chr1,151765708,151766004,-,AluY,SINE,Alu,-15,296,1,151765693,151766004 -1 - chr1 151766008 151766258 chr1,151766004,151766258,+,MER102b,DNA,hAT-Charlie,89,340,-1,151765916,151766259 +2 + chr1 151766348 151766389 chr1,151766348,151766550,+,MamRep38,DNA,hAT,78,295,0,151766271,151766550 +5 + chr1 151766486 151766550 chr1,151766348,151766550,+,MamRep38,DNA,hAT,78,295,0,151766271,151766550 -5 + chr1 151769344 151769501 chr1,151768666,151770134,-,SVA_C,Retroposon,SVA,-6,1378,3,151768660,151770136 +1 - chr1 151793815 151794092 chr1,151793793,151794092,-,AluSc8,SINE,Alu,-12,299,1,151793781,151794092 -2 - chr1 151794148 151794402 chr1,151794148,151794553,-,L1ME3A,LINE,L1,-17,6156,5754,151794131,151800306 -5 - chr1 151798194 151798316 chr1,151798194,151798316,+,MER3,DNA,hAT-Charlie,36,161,-48,151798159,151798364 +6 + chr1 151798320 151798602 chr1,151798320,151798696,+,Charlie5,DNA,hAT-Charlie,2235,2624,0,151796086,151798696 +5 + chr1 151844045 151844242 chr1,151844009,151844337,+,MLT1J1,LTR,ERVL-MaLR,60,442,-2,151843950,151844339 +3 + chr1 151994537 151994606 chr1,151994537,151994838,+,AluSx,SINE,Alu,1,312,0,151994537,151994838 +4 + chr1 151998708 151998821 chr1,151998485,151998881,+,MLT1J2,LTR,ERVL-MaLR,1,440,-4,151998485,151998885 +3 + chr1 152016915 152016993 chr1,152016915,152016993,+,MIRc,SINE,MIR,82,160,-48,152016834,152017041 +6 + chr1 152041585 152041668 chr1,152041567,152041668,-,L2b,LINE,L2,0,3375,3273,152041567,152044940 -2 - chr1 152041704 152042086 chr1,152041704,152042086,-,L2b,LINE,L2,-1193,2226,1819,152040511,152043904 -6 - chr1 152251653 152251758 chr1,152251473,152251821,-,HAL1b,LINE,L1,-2062,359,6,152249411,152251826 -3 - chr1 152269417 152270585 chr1,152268111,152270585,-,L1PA6,LINE,L1,-3978,2505,5,152264133,152270589 -2 - chr1 152270618 152270716 chr1,152270618,152270716,-,L1M4,LINE,L1,-1618,4528,4428,152269000,152275143 -6 - chr1 152270731 152270784 chr1,152270731,152270784,-,L1PA15,LINE,L1,-14,6151,6099,152270717,152276882 -6 - chr1 152270784 152271058 chr1,152270784,152271058,-,L1PA15,LINE,L1,-246,5919,5652,152270538,152276709 -6 - chr1 152271058 152271094 chr1,152271058,152271484,-,MSTA,LTR,ERVL-MaLR,0,428,1,152271058,152271484 -5 - chr1 152335339 152335439 chr1,152334882,152335808,+,MER49,LTR,ERV1,1,923,0,152334882,152335808 +3 + chr1 152337068 152337094 chr1,152336039,152338240,-,L1ME5,LINE,L1,-6,6188,3855,152336033,152342094 -1 - chr1 152337989 152338089 chr1,152336039,152338240,-,L1ME5,LINE,L1,-6,6188,3855,152336033,152342094 -1 - chr1 152341087 152341210 chr1,152341081,152341332,-,AluJr,SINE,Alu,-26,286,43,152341055,152341374 -5 - chr1 152365021 152365068 chr1,152365021,152365068,+,(CA)n,Simple_repeat,Simple_repeat,1,47,0,152365021,152365068 +6 + chr1 152366347 152366542 chr1,152366347,152366542,+,MIRb,SINE,MIR,8,258,-10,152366340,152366552 +6 + chr1 152373963 152374047 chr1,152373963,152374270,-,L2,LINE,L2,-373,3046,2700,152373590,152376969 -4 - chr1 152445131 152445322 chr1,152445131,152445322,-,L1ME4c,LINE,L1,-138,692,474,152444993,152445795 -6 - chr1 152930814 152930937 chr1,152930814,152930937,+,MLT1L,LTR,ERVL-MaLR,415,548,-62,152930400,152930999 -6 + chr1 153174593 153174645 chr1,153174593,153174771,-,MLT1N2,LTR,ERVL-MaLR,-387,175,1,153174206,153174771 -4 - chr1 153176206 153176256 chr1,153176206,153176256,+,MIR3,SINE,MIR,77,126,-82,153176130,153176338 +6 + chr1 153191383 153191514 chr1,153191383,153191514,-,Charlie1b,DNA,hAT-Charlie,0,523,392,153191383,153191905 -6 - chr1 153191495 153191676 chr1,153191495,153191735,-,Charlie1,DNA,hAT-Charlie,-2544,237,1,153188951,153191735 -5 - chr1 153631438 153631497 chr1,153631226,153631497,+,MIRb,SINE,MIR,2,268,0,153631225,153631497 -5 + chr1 153633036 153633157 chr1,153632887,153633191,+,AluSz,SINE,Alu,1,312,0,153632887,153633191 -3 + chr1 153966516 153966639 chr1,153966363,153966639,+,AluY,SINE,Alu,1,303,-8,153966363,153966647 +1 + chr1 153966639 153966664 chr1,153966639,153966664,+,MIRb,SINE,MIR,127,147,-121,153966513,153966785 +6 + chr1 153966843 153966893 chr1,153966843,153966893,+,Tigger19b,DNA,TcMar-Tigger,365,419,-131,153966479,153967024 +6 + chr1 153978371 153978494 chr1,153978371,153978494,-,MIRc,SINE,MIR,-104,164,31,153978267,153978524 -6 - chr1 153978602 153978630 chr1,153978602,153978630,+,(ATTTT)n,Simple_repeat,Simple_repeat,1,29,0,153978602,153978630 +6 + chr1 153978687 153978878 chr1,153978687,153978878,-,AluJo,SINE,Alu,-4,308,120,153978683,153978997 -6 - chr1 153978892 153978943 chr1,153978892,153978943,+,(TG)n,Simple_repeat,Simple_repeat,1,52,0,153978892,153978943 +6 + chr1 154402628 154402824 chr1,154402628,154402824,+,MIRc,SINE,MIR,16,238,-30,154402613,154402854 -6 + chr1 154402928 154403239 chr1,154402928,154403239,-,AluSq,SINE,Alu,0,313,1,154402928,154403239 +6 - chr1 154403247 154403416 chr1,154403247,154403416,-,MIR,SINE,MIR,-67,201,21,154403180,154403436 +6 - chr1 154481226 154481271 chr1,154481226,154481271,+,Eulor9C,DNA,DNA,188,232,-38,154481039,154481309 +6 + chr1 154579268 154579338 chr1,154579268,154579376,-,MIRb,SINE,MIR,-42,226,106,154579226,154579481 +2 - chr1 154937827 154937861 chr1,154937827,154937861,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,154937827,154937861 +6 + chr1 154937972 154938059 chr1,154937972,154938082,+,MIRc,SINE,MIR,167,265,-3,154937806,154938085 +5 + chr1 155045191 155045262 chr1,155045081,155045262,-,MamRep564,Unknown,Unknown,-89,268,86,155044992,155045347 +5 - chr1 155045520 155045807 chr1,155045520,155045807,+,L2b,LINE,L2,3075,3387,0,155042446,155045807 -6 + chr1 155196868 155196895 chr1,155196804,155196895,-,MIR3,SINE,MIR,-27,181,83,155196777,155196977 -1 - chr1 155201719 155201853 chr1,155201649,155201853,-,MIRb,SINE,MIR,-32,236,24,155201617,155201876 -2 - chr1 155205408 155205484 chr1,155205408,155205484,+,L2c,LINE,L2,3305,3378,-9,155202104,155205493 +6 + chr1 155211151 155211174 chr1,155210987,155211174,+,MIR3,SINE,MIR,5,192,-16,155210983,155211190 -5 + chr1 155211331 155211473 chr1,155211331,155211473,-,MIRc,SINE,MIR,-14,254,94,155211317,155211566 +6 - chr1 155316883 155317019 chr1,155316883,155317019,-,L2c,LINE,L2,-9,3378,3235,155316874,155320253 +6 - chr1 155317414 155317494 chr1,155317414,155317494,-,MIRc,SINE,MIR,-109,159,76,155317305,155317569 +5 - chr1 155317553 155317853 chr1,155317553,155317853,+,AluJo,SINE,Alu,1,301,-11,155317553,155317864 -6 + chr1 155320159 155320200 chr1,155319977,155320200,+,MER20,DNA,hAT-Charlie,1,219,0,155319977,155320200 -5 + chr1 155396312 155396402 chr1,155396312,155396610,-,AluSq2,SINE,Alu,-11,302,1,155396301,155396610 +2 - chr1 155396924 155396978 chr1,155396681,155396978,+,AluSx1,SINE,Alu,1,299,-13,155396681,155396991 -1 + chr1 155562150 155562185 chr1,155562150,155562185,+,(ACCGAG)n,Simple_repeat,Simple_repeat,1,35,0,155562150,155562185 +6 + chr1 155563690 155563841 chr1,155563690,155563841,+,MIRb,SINE,MIR,89,250,-18,155563602,155563859 +6 + chr1 155710538 155710563 chr1,155710529,155710583,-,L2c,LINE,L2,-24,3363,3314,155710505,155713896 +1 - chr1 155981152 155981340 chr1,155981152,155981340,+,MIRc,SINE,MIR,47,260,-8,155981106,155981348 +6 + chr1 155982817 155982981 chr1,155982817,155982981,+,FRAM,SINE,Alu,1,168,-8,155982817,155982989 +6 + chr1 155991422 155991505 chr1,155991422,155991505,-,L2c,LINE,L2,-18,3369,3279,155991404,155994783 -6 - chr1 156390879 156390920 chr1,156390879,156390920,+,G-rich,Low_complexity,Low_complexity,1,41,0,156390879,156390920 +6 + chr1 156393308 156393434 chr1,156393308,156393434,-,MIR,SINE,MIR,-70,192,53,156393238,156393486 -6 - chr1 156393462 156393600 chr1,156393462,156393600,+,L2a,LINE,L2,3002,3141,-285,156390461,156393885 +6 + chr1 156393600 156393785 chr1,156393600,156393785,+,L1MC5,LINE,L1,9108,9303,-1,156384493,156393786 +6 + chr1 156393805 156394020 chr1,156393805,156394020,-,AluSz6,SINE,Alu,-17,295,85,156393788,156394104 -6 - chr1 156394023 156394256 chr1,156394023,156394256,+,L2a,LINE,L2,3162,3387,-39,156390862,156394295 +6 + chr1 156394627 156394903 chr1,156394627,156394903,-,MIRb,SINE,MIR,-1,267,68,156394626,156394970 -6 - chr1 156395254 156395557 chr1,156395254,156395557,-,AluSq2,SINE,Alu,-7,306,1,156395247,156395557 -6 - chr1 156453030 156453071 chr1,156453030,156453071,-,MIR,SINE,MIR,-123,139,100,156452907,156453170 +6 - chr1 156453102 156453252 chr1,156453102,156453300,-,L2c,LINE,L2,-8,3379,3180,156453094,156456479 +2 - chr1 156454779 156454795 chr1,156454779,156454847,+,MIRc,SINE,MIR,182,255,-13,156454598,156454860 -2 + chr1 156456353 156456368 chr1,156456173,156456368,+,MIRc,SINE,MIR,26,236,-32,156456148,156456400 -4 + chr1 156510710 156510774 chr1,156510710,156510774,-,L2c,LINE,L2,-5,3382,3321,156510705,156514094 -6 - chr1 156511136 156511316 chr1,156511136,156511316,-,MIRb,SINE,MIR,-27,241,56,156511109,156511371 -6 - chr1 156511373 156511655 chr1,156511373,156511655,+,AluSx,SINE,Alu,3,285,-27,156511371,156511682 +6 + chr1 156511655 156511681 chr1,156511655,156511690,+,(AAAT)n,Simple_repeat,Simple_repeat,1,36,0,156511655,156511690 +5 + chr1 156614940 156615002 chr1,156614940,156615002,-,MIRc,SINE,MIR,-47,221,152,156614893,156615153 +6 - chr1 156615072 156615239 chr1,156615072,156615239,-,MIR3,SINE,MIR,-47,183,12,156615025,156615250 +6 - chr1 156637783 156637851 chr1,156637641,156637851,-,L1MC5a,LINE,L1,-1782,995,836,156635859,156638686 +5 - chr1 156637853 156637931 chr1,156637853,156637931,-,MIR,SINE,MIR,-113,149,70,156637740,156638000 +6 - chr1 156638811 156638857 chr1,156638811,156638857,+,(CTCT)n,Simple_repeat,Simple_repeat,1,47,0,156638811,156638857 -6 + chr1 156638871 156639006 chr1,156638871,156639006,+,MIRc,SINE,MIR,9,145,-123,156638863,156639129 -6 + chr1 156639588 156639723 chr1,156639588,156639723,-,MIRb,SINE,MIR,-93,175,34,156639495,156639756 +6 - chr1 156640232 156640310 chr1,156640232,156640310,+,L2a,LINE,L2,3354,3426,0,156636879,156640310 -6 + chr1 156640389 156640715 chr1,156640389,156640715,-,AluSx1,SINE,Alu,0,312,2,156640389,156640716 +6 - chr1 156642032 156642075 chr1,156642032,156642075,+,G-rich,Low_complexity,Low_complexity,1,43,0,156642032,156642075 -6 + chr1 156642159 156642193 chr1,156642159,156642193,+,(GCAGCT)n,Simple_repeat,Simple_repeat,1,36,0,156642159,156642193 -6 + chr1 156642750 156642948 chr1,156642750,156642948,+,MIRb,SINE,MIR,39,260,-8,156642712,156642956 -6 + chr1 156643609 156643635 chr1,156643609,156643635,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,156643609,156643635 -6 + chr1 156643635 156643668 chr1,156643635,156643668,+,(AG)n,Simple_repeat,Simple_repeat,1,33,0,156643635,156643668 -6 + chr1 156687727 156688036 chr1,156687727,156688036,-,AluSx1,SINE,Alu,-2,310,1,156687725,156688036 +6 - chr1 156688044 156688350 chr1,156688044,156688350,-,AluSq,SINE,Alu,-6,307,2,156688038,156688351 +6 - chr1 156688368 156688487 chr1,156688368,156688487,-,AluJo,SINE,Alu,-194,118,2,156688174,156688488 +6 - chr1 156688579 156688883 chr1,156688579,156688883,+,AluSz,SINE,Alu,1,298,-14,156688579,156688897 -6 + chr1 156688987 156689234 chr1,156688987,156689234,+,L3b,LINE,CR1,3741,4011,-88,156685247,156689322 -6 + chr1 156690110 156690150 chr1,156690110,156690150,+,G-rich,Low_complexity,Low_complexity,1,43,0,156690110,156690150 -6 + chr1 156690208 156690272 chr1,156690208,156690272,+,GA-rich,Low_complexity,Low_complexity,1,69,0,156690208,156690272 -6 + chr1 156690376 156690479 chr1,156690376,156690479,+,L3b,LINE,CR1,4986,5086,-146,156685391,156690625 -6 + chr1 156690829 156690878 chr1,156690829,156690878,+,L2a,LINE,L2,3377,3425,-1,156687453,156690879 -6 + chr1 156713101 156713174 chr1,156713101,156713418,+,AluSx,SINE,Alu,1,312,0,156713101,156713418 -1 + chr1 157187065 157187153 chr1,157187065,157187153,+,GA-rich,Low_complexity,Low_complexity,1,86,0,157187065,157187153 +6 + chr1 157187347 157187370 chr1,157187347,157187370,+,(ATAG)n,Simple_repeat,Simple_repeat,1,23,0,157187347,157187370 +6 + chr1 157232231 157232540 chr1,157232122,157232826,-,MER50,LTR,ERV1,-23,711,1,157232099,157232826 +5 - chr1 157280716 157280853 chr1,157280696,157280992,-,AluJo,SINE,Alu,-16,296,1,157280680,157280992 -1 - chr1 157282578 157282710 chr1,157282206,157282710,-,MLT1E2,LTR,ERVL-MaLR,-2,652,36,157282204,157282745 -2 - chr1 157282727 157282905 chr1,157282727,157282905,-,L2a,LINE,L2,-1134,2285,2092,157281593,157284996 -6 - chr1 157282905 157283055 chr1,157282905,157283055,-,L2-3_Crp,LINE,L2,-1214,882,732,157281691,157283786 -6 - chr1 157283046 157283068 chr1,157283046,157283275,+,L1M4,LINE,L1,5330,5562,-616,157277717,157283891 +5 + chr1 157287982 157288016 chr1,157287982,157288016,+,(TCT)n,Simple_repeat,Simple_repeat,1,34,0,157287982,157288016 -4 + chr1 157691914 157692024 chr1,157691914,157692191,+,Charlie7,DNA,hAT-Charlie,54,353,-2259,157691861,157694450 +4 + chr1 158025550 158025686 chr1,158025538,158025735,+,GA-rich,Low_complexity,Low_complexity,1,188,0,158025538,158025735 +1 + chr1 158132044 158132159 chr1,158131985,158132159,-,L1MB8,LINE,L1,-1,6177,6012,158131984,158138170 +5 - chr1 158140498 158140599 chr1,158140301,158140599,-,L2c,LINE,L2,-5,3382,3072,158140296,158143670 +4 - chr1 158197922 158198490 chr1,158197411,158198490,-,L1MA4,LINE,L1,-1226,4917,3829,158196185,158202318 +5 - chr1 158198574 158198656 chr1,158198574,158198656,+,LTR81A,LTR,Gypsy,1259,1353,-40,158197316,158198696 -6 + chr1 158199077 158199410 chr1,158199077,158199410,+,AluY,SINE,Alu,1,311,0,158199077,158199410 -6 + chr1 158199557 158199835 chr1,158199557,158199866,+,AluSq2,SINE,Alu,1,311,-2,158199557,158199868 -2 + chr1 158480690 158480758 chr1,158480690,158480758,+,L3,LINE,CR1,142,208,-3891,158480549,158484649 -6 + chr1 158481085 158481342 chr1,158481085,158481342,-,LTR78,LTR,ERV1,-217,1087,818,158480868,158482159 +6 - chr1 158481711 158481794 chr1,158481711,158481794,-,LTR78,LTR,ERV1,-906,398,315,158480805,158482108 +6 - chr1 158494536 158494642 chr1,158494536,158494642,-,MER5C1,DNA,hAT-Charlie,0,263,149,158494536,158494790 +6 - chr1 158494649 158494855 chr1,158494649,158494855,-,Charlie10,DNA,hAT-Charlie,-2627,195,1,158492022,158494855 +1 - chr1 159196013 159196080 chr1,159196013,159196080,-,L2a,LINE,L2,-1,3425,3362,159196012,159199441 +6 - chr1 159198166 159198221 chr1,159198166,159198312,+,L3b,LINE,CR1,5064,5229,-3,159193103,159198315 -2 + chr1 159201099 159201129 chr1,159201099,159201129,+,(GGGA)n,Simple_repeat,Simple_repeat,1,32,0,159201099,159201129 -6 + chr1 159201241 159201266 chr1,159201241,159201266,+,(AAAC)n,Simple_repeat,Simple_repeat,1,27,0,159201241,159201266 -6 + chr1 159346166 159346689 chr1,159345572,159347080,-,L1ME3D,LINE,L1,-411,5831,4212,159345161,159351291 +5 - chr1 159361777 159361899 chr1,159361777,159362076,-,MamGypLTR3,LTR,Gypsy,-372,522,201,159361405,159362276 +2 - chr1 159364341 159364487 chr1,159364341,159364487,-,L3b,LINE,CR1,-182,5050,4904,159364159,159369390 +6 - chr1 159468900 159469068 chr1,159468900,159469291,-,THE1D,LTR,ERVL-MaLR,0,381,1,159468900,159469291 +1 - chr1 159867102 159867188 chr1,159867102,159867188,-,L2b,LINE,L2,-1,3374,3264,159867101,159870451 -6 - chr1 159965499 159965642 chr1,159965368,159965642,-,MamRep605,LTR?,LTR?,-323,526,221,159965045,159965862 -2 - chr1 159976791 159976885 chr1,159976791,159976885,-,SVA_A,Retroposon,SVA,-1082,305,210,159975709,159977094 -6 - chr1 159976818 159976895 chr1,159976818,159976895,+,FLAM_A,SINE,Alu,58,131,-11,159976761,159976906 +6 + chr1 159976895 159977025 chr1,159976895,159977025,+,(GAAA)n,Simple_repeat,Simple_repeat,1,134,0,159976895,159977025 +6 + chr1 159978899 159979061 chr1,159978899,159979136,+,hAT-N1_Mam,DNA,hAT-Tip100?,52,300,-40,159978848,159979176 +5 + chr1 160025146 160025337 chr1,160025146,160025337,-,MIR,SINE,MIR,-27,241,18,160025119,160025354 +6 - chr1 160025814 160025915 chr1,160025814,160025915,+,MIRb,SINE,MIR,102,206,-62,160025713,160025977 -6 + chr1 160025984 160026020 chr1,160025984,160026020,+,G-rich,Low_complexity,Low_complexity,1,36,0,160025984,160026020 -6 + chr1 160026355 160026535 chr1,160026355,160026535,+,L1MC4,LINE,L1,7791,7983,-59,160018565,160026594 -6 + chr1 160026558 160026794 chr1,160026558,160026845,+,AluJr,SINE,Alu,1,302,-10,160026558,160026855 -1 + chr1 160079615 160079821 chr1,160079615,160080414,+,L1MC1,LINE,L1,5483,6332,-1,160074133,160080415 +5 + chr1 160202258 160202516 chr1,160202258,160202525,+,L2c,LINE,L2,3098,3382,-5,160199161,160202530 -2 + chr1 160205392 160205439 chr1,160205392,160205439,+,(GGC)n,Simple_repeat,Simple_repeat,1,47,0,160205392,160205439 -6 + chr1 160208325 160208356 chr1,160208325,160208356,+,(GGAA)n,Simple_repeat,Simple_repeat,1,31,0,160208325,160208356 -6 + chr1 160262402 160262482 chr1,160262402,160262482,+,(CCACCG)n,Simple_repeat,Simple_repeat,1,82,0,160262402,160262482 +6 + chr1 160570939 160571161 chr1,160570871,160571161,+,MLT1J,LTR,ERVL-MaLR,206,486,-26,160570666,160571187 +2 + chr1 160571215 160571458 chr1,160571215,160571660,-,L2c,LINE,L2,-1134,2285,1789,160570081,160573448 -5 - chr1 160670825 160670980 chr1,160670825,160670980,+,GA-rich,Low_complexity,Low_complexity,1,155,0,160670825,160670980 +6 + chr1 160673018 160673192 chr1,160673018,160673192,-,LTR78B,LTR,ERV1,-4,1292,1114,160673014,160674305 -6 - chr1 160673396 160673654 chr1,160673396,160673674,-,LTR78B,LTR,ERV1,-498,798,498,160672898,160674171 -1 - chr1 160676360 160676504 chr1,160676236,160676529,+,MER45B,DNA,hAT-Tip100,8,329,-711,160676229,160677240 +1 + chr1 160683699 160683829 chr1,160683699,160683829,-,MIRc,SINE,MIR,-7,261,119,160683692,160683947 -5 - chr1 160683832 160683908 chr1,160683832,160684038,+,MLT1O,LTR,ERVL-MaLR,4,206,-336,160683829,160684374 +5 + chr1 160931739 160931928 chr1,160931488,160931928,-,MER77B,LTR,ERVL,-23,677,225,160931465,160932152 +5 - chr1 160931970 160932177 chr1,160931970,160932304,-,MLT1H1,LTR,ERVL-MaLR,-192,399,66,160931778,160932369 +2 - chr1 160932917 160933326 chr1,160932624,160934166,+,SVA_B,Retroposon,SVA,1,1381,-2,160932624,160934168 +3 + chr1 160934310 160934401 chr1,160934189,160934403,+,ERVL-E-int,LTR,ERVL,3117,3331,-2336,160931073,160936739 +1 + chr1 160934245 160934380 chr1,160934189,160934403,+,ERVL-E-int,LTR,ERVL,3117,3331,-2336,160931073,160936739 -1 + chr1 160944858 160944880 chr1,160944825,160944880,-,U6,snRNA,snRNA,-51,56,2,160944774,160944881 -2 - chr1 160948651 160948803 chr1,160948627,160948803,-,AluSp,SINE,Alu,-12,301,125,160948615,160948927 -2 - chr1 160948824 160949791 chr1,160948824,160949791,-,LTR5_Hs,LTR,ERVK,0,968,1,160948824,160949791 -6 - chr1 160949838 160949922 chr1,160949838,160949969,+,MIR,SINE,MIR,133,262,0,160949706,160949969 +5 + chr1 161086958 161087128 chr1,161086958,161087128,-,MIR3,SINE,MIR,-2,206,22,161086956,161087149 -6 - chr1 161517975 161518039 chr1,161517820,161518039,+,MER57-int,LTR,ERV1,6791,7015,-522,161511030,161518561 +2 + chr1 161556290 161556336 chr1,161556236,161556336,-,L2c,LINE,L2,-2047,1372,1273,161554189,161557608 +5 - chr1 161556905 161557078 chr1,161556725,161557249,-,MER1A,DNA,hAT-Charlie,0,529,1,161556725,161557249 +1 - chr1 161671978 161672059 chr1,161671935,161672059,+,MIRb,SINE,MIR,63,190,-78,161671873,161672137 -5 + chr1 161672129 161672149 chr1,161672129,161672234,+,L2c,LINE,L2,3266,3372,-15,161668864,161672249 -2 + chr1 161674628 161674701 chr1,161674470,161674701,+,MIR,SINE,MIR,2,244,-18,161674469,161674719 -4 + chr1 162039493 162039567 chr1,162039493,162039936,+,MLT1D,LTR,ERVL-MaLR,27,505,0,162039467,162039936 +5 + chr1 162316852 162316961 chr1,162316529,162316961,-,LTR7B,LTR,ERV1,0,464,1,162316529,162316961 +5 - chr1 162560227 162560343 chr1,162560153,162560343,-,MIR,SINE,MIR,0,262,38,162560153,162560380 +5 - chr1 162560773 162560863 chr1,162560773,162560863,-,MIR3,SINE,MIR,-27,181,82,162560746,162560944 +6 - chr1 162593466 162593511 chr1,162593466,162593775,+,AluSx,SINE,Alu,1,310,-2,162593466,162593777 +5 + chr1 162593659 162593754 chr1,162593466,162593775,+,AluSx,SINE,Alu,1,310,-2,162593466,162593777 +5 + chr1 163206697 163206840 chr1,163206503,163206871,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,163206503,163206871 +3 + chr1 163210873 163210965 chr1,163210873,163210965,+,OldhAT1,DNA,hAT-Ac,2647,2735,-113,163208227,163211078 +6 + chr1 163211100 163211277 chr1,163211100,163211277,-,L2,LINE,L2,-1420,1999,1822,163209680,163213098 -6 - chr1 163212127 163212214 chr1,163212127,163212214,+,MIR3,SINE,MIR,118,208,0,163212010,163212214 +6 + chr1 163212233 163212308 chr1,163212233,163212308,+,L2c,LINE,L2,3266,3336,-51,163208968,163212359 +6 + chr1 163212355 163212385 chr1,163212355,163212385,+,A-rich,Low_complexity,Low_complexity,1,30,0,163212355,163212385 +6 + chr1 163212424 163212597 chr1,163212424,163212597,-,MER91A,DNA,hAT-Tip100,-25,171,1,163212399,163212597 -6 - chr1 163244778 163244883 chr1,163244778,163244883,+,UCON55,DNA,TcMar-Tigger,74,191,-1,163244705,163244884 -6 + chr1 163248474 163248528 chr1,163248474,163248528,-,MIRc,SINE,MIR,-106,156,104,163248368,163248631 +6 - chr1 163260550 163260659 chr1,163260458,163260668,+,L1PB3,LINE,L1,5947,6152,-2,163254512,163260670 +5 + chr1 163304414 163304464 chr1,163304414,163304464,-,UCON132b,DNA,hAT-Tip100,-5,143,94,163304409,163304557 +6 - chr1 163304475 163304725 chr1,163304475,163304725,+,L2a,LINE,L2,3110,3423,-3,163301366,163304728 -6 + chr1 163304949 163305202 chr1,163304949,163305202,-,LTR78B,LTR,ERV1,-61,1235,901,163304888,163306102 +6 - chr1 163308544 163308613 chr1,163308454,163308613,-,Charlie18a,DNA,hAT-Charlie,-148,194,18,163308306,163308630 +1 - chr1 163318844 163318947 chr1,163318844,163318947,-,L2a,LINE,L2,-1837,1582,1491,163317007,163320437 +6 - chr1 163318961 163319148 chr1,163318961,163319148,-,MamRep1527,LTR,LTR,-11,958,754,163318950,163319901 +6 - chr1 163319196 163319291 chr1,163319196,163319304,-,MamRep1527,LTR,LTR,-298,671,568,163318898,163319871 +5 - chr1 163321266 163321365 chr1,163321203,163321365,+,MIR3,SINE,MIR,13,185,-23,163321191,163321388 -4 + chr1 163321387 163321592 chr1,163321387,163321592,+,MIRb,SINE,MIR,42,253,-15,163321346,163321607 -6 + chr1 164680380 164680477 chr1,164680380,164680477,-,L1PA16,LINE,L1,-2,6164,6069,164680378,164686545 -6 - chr1 164680689 164680799 chr1,164680689,164680873,-,L3,LINE,CR1,-198,3901,3713,164680491,164684585 -5 - chr1 164770327 164770357 chr1,164770257,164770357,-,MIRc,SINE,MIR,-146,116,11,164770111,164770367 +4 - chr1 164829039 164829134 chr1,164829039,164829134,-,L2c,LINE,L2,-6,3381,3286,164829033,164832419 -6 - chr1 164829388 164829496 chr1,164829388,164829496,+,MER3,DNA,hAT-Charlie,5,111,-98,164829384,164829594 +6 + chr1 164829498 164829794 chr1,164829498,164829794,+,L1PA11,LINE,L1,5865,6174,0,164823634,164829794 +6 + chr1 165212842 165213090 chr1,165212720,165213103,+,MLT1J,LTR,ERVL-MaLR,1,468,-44,165212720,165213147 +5 + chr1 165476841 165477115 chr1,165476744,165477212,-,LTR53,LTR,ERVL,0,519,21,165476744,165477232 +5 - chr1 165489607 165489688 chr1,165489607,165489688,+,MIR3,SINE,MIR,69,150,-80,165489539,165489768 -6 + chr1 165489701 165489872 chr1,165489701,165489872,-,MER5B,DNA,hAT-Charlie,-6,172,1,165489695,165489872 +6 - chr1 165492961 165492996 chr1,165492493,165492996,-,L2b,LINE,L2,-38,3349,2791,165492455,165495786 +5 - chr1 165499012 165499094 chr1,165498848,165499094,-,MIR,SINE,MIR,0,262,11,165498848,165499104 +5 - chr1 165499098 165499113 chr1,165499098,165499277,-,MER5A,DNA,hAT-Charlie,0,189,1,165499098,165499277 +2 - chr1 165508080 165508171 chr1,165508056,165508435,-,MLT1J,LTR,ERVL-MaLR,-146,366,1,165507910,165508435 +3 - chr1 165523025 165523087 chr1,165523025,165523102,+,MLT1J1,LTR,ERVL-MaLR,54,129,-315,165522972,165523417 -2 + chr1 165528783 165528884 chr1,165528775,165528894,+,THE1B,LTR,ERVL-MaLR,196,315,-49,165528580,165528943 -1 + chr1 165539435 165539540 chr1,165539368,165539540,+,MIR,SINE,MIR,9,189,-73,165539360,165539613 -4 + chr1 165539596 165539612 chr1,165539596,165539698,-,MIRb,SINE,MIR,-79,189,89,165539517,165539786 +1 - chr1 165574018 165574041 chr1,165573924,165574041,+,MLT1I,LTR,ERVL-MaLR,71,187,-302,165573854,165574343 -4 + chr1 165574070 165574088 chr1,165574070,165574147,+,MLT1I,LTR,ERVL-MaLR,244,328,-83,165573827,165574230 -2 + chr1 165581693 165581737 chr1,165581693,165581737,+,(CCGAGG)n,Simple_repeat,Simple_repeat,1,44,0,165581693,165581737 -6 + chr1 165621536 165621607 chr1,165621536,165621640,-,MER81,DNA,hAT-Blackjack,-1,113,6,165621535,165621645 -4 - chr1 165623281 165623331 chr1,165623281,165624308,-,L1MC4,LINE,L1,-295,7747,6669,165622986,165630976 -5 - chr1 165706643 165706713 chr1,165706643,165706713,+,L2,LINE,L2,2583,2651,-768,165704061,165707481 -6 + chr1 165706713 165706933 chr1,165706713,165706933,+,L1PB2,LINE,L1,5932,6151,0,165700782,165706933 -6 + chr1 165707072 165707254 chr1,165707072,165707254,-,MLT1J,LTR,ERVL-MaLR,0,512,324,165707072,165707577 +6 - chr1 165773474 165773780 chr1,165773462,165773780,-,AluJr,SINE,Alu,-20,292,2,165773442,165773781 -2 - chr1 165773785 165773891 chr1,165773785,165773891,+,L2a,LINE,L2,3285,3426,0,165770501,165773891 +6 + chr1 165774152 165774455 chr1,165774152,165774455,-,AluSz,SINE,Alu,-6,306,1,165774146,165774455 -6 - chr1 165774462 165774730 chr1,165774462,165774730,-,AluJb,SINE,Alu,-21,291,1,165774441,165774730 -6 - chr1 165774731 165774874 chr1,165774731,165774874,+,Charlie4z,DNA,hAT-Charlie,23,164,-3,165774709,165774877 +6 + chr1 165775160 165775176 chr1,165775160,165775979,+,L1MB3,LINE,L1,4158,4951,-1189,165771003,165777168 +5 + chr1 165900272 165900502 chr1,165900272,165900502,-,MIR,SINE,MIR,-11,251,26,165900261,165900527 +6 - chr1 166087087 166087362 chr1,166087071,166087362,-,AluSq4,SINE,Alu,-18,293,1,166087053,166087362 -2 - chr1 166087362 166087458 chr1,166087362,166087458,-,MIR,SINE,MIR,-115,147,44,166087247,166087501 -6 - chr1 166147782 166147924 chr1,166147637,166147924,-,AluJo,SINE,Alu,-18,294,12,166147619,166147935 +5 - chr1 166334884 166334963 chr1,166334707,166335443,+,MER92-int,LTR,ERV1,4456,5185,-33,166330252,166335476 +1 + chr1 166335328 166335443 chr1,166334707,166335443,+,MER92-int,LTR,ERV1,4456,5185,-33,166330252,166335476 +1 + chr1 166335558 166335762 chr1,166335470,166335785,+,MER92D,LTR,ERV1,1,317,-3,166335470,166335788 +5 + chr1 166388234 166388360 chr1,166388234,166388389,+,FRAM,SINE,Alu,20,174,-2,166388215,166388391 -2 + chr1 166452562 166452632 chr1,166452493,166452713,-,MIR,SINE,MIR,-41,221,2,166452452,166452714 +1 - chr1 166476881 166476969 chr1,166476664,166477100,+,L3,LINE,CR1,3593,4019,-80,166473072,166477180 -3 + chr1 166489861 166489960 chr1,166489342,166489960,-,L2a,LINE,L2,-1,3425,2762,166489341,166492721 +4 - chr1 166490005 166490039 chr1,166490005,166490287,-,LTR12F,LTR,ERV1,-22,497,237,166489983,166490523 +1 - chr1 167058316 167058489 chr1,167058316,167058489,-,L2b,LINE,L2,-60,3315,3141,167058256,167061629 -6 - chr1 167058490 167058542 chr1,167058490,167058577,-,L1ME4a,LINE,L1,-66,6058,5970,167058424,167064546 -5 - chr1 167175917 167175985 chr1,167175738,167175985,-,MIR,SINE,MIR,-13,249,9,167175725,167175993 +5 - chr1 167176240 167176604 chr1,167176240,167176604,-,MLT1A0,LTR,ERVL-MaLR,0,365,4,167176240,167176607 +5 - chr1 167176608 167176815 chr1,167176608,167178031,-,MLT1A0-int,LTR,ERVL-MaLR,-1,1370,5,167176607,167178035 +2 - chr1 167195441 167195480 chr1,167195441,167195726,-,AluYa5,SINE,Alu,0,311,30,167195441,167195755 +1 - chr1 167195657 167195726 chr1,167195441,167195726,-,AluYa5,SINE,Alu,0,311,30,167195441,167195755 +1 - chr1 167195763 167195792 chr1,167195763,167196103,+,L2c,LINE,L2,3047,3375,0,167192717,167196103 -1 + chr1 167379108 167379230 chr1,167378926,167379230,-,AluJr,SINE,Alu,-15,297,3,167378911,167379232 -1 - chr1 167379992 167380029 chr1,167379992,167380029,+,MIRc,SINE,MIR,89,125,-143,167379904,167380172 +6 + chr1 167380110 167380351 chr1,167380110,167380351,+,MIR,SINE,MIR,2,252,-10,167380109,167380361 +6 + chr1 167458553 167458627 chr1,167458553,167458627,+,L2c,LINE,L2,3083,3157,-230,167455471,167458857 -6 + chr1 167459608 167459653 chr1,167459348,167459653,-,AluSx,SINE,Alu,-8,304,1,167459340,167459653 +4 - chr1 167459653 167459822 chr1,167459653,167459822,+,DNA1_Mam,DNA,TcMar,231,407,0,167459423,167459822 -6 + chr1 167459844 167459891 chr1,167459844,167459986,+,L2c,LINE,L2,3250,3387,0,167456595,167459986 -1 + chr1 167627385 167627651 chr1,167627369,167627651,-,AluSg,SINE,Alu,-15,295,14,167627354,167627664 +5 - chr1 167628712 167628840 chr1,167628712,167628840,-,MIRb,SINE,MIR,-119,149,20,167628593,167628859 +6 - chr1 167629579 167629605 chr1,167629579,167629605,+,(TCC)n,Simple_repeat,Simple_repeat,1,26,0,167629579,167629605 -6 + chr1 167629611 167629647 chr1,167629611,167629659,+,(AGAT)n,Simple_repeat,Simple_repeat,1,49,0,167629611,167629659 -2 + chr1 167820412 167820457 chr1,167820412,167820457,+,MER5A,DNA,hAT-Charlie,145,189,0,167820268,167820457 +6 + chr1 167820663 167820944 chr1,167820657,167820944,+,AluJb,SINE,Alu,2,290,-22,167820656,167820966 +2 + chr1 168400829 168400842 chr1,168400652,168400842,-,L3,LINE,CR1,-1,4098,3911,168400651,168404752 +5 - chr1 168400870 168401305 chr1,168400870,168401305,-,L2b,LINE,L2,0,3387,2975,168400870,168404279 +6 - chr1 168401454 168401483 chr1,168401454,168401483,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,168401454,168401483 -6 + chr1 168401494 168401543 chr1,168401494,168401543,-,LTR81B,LTR,Gypsy,-67,1326,1276,168401427,168402818 +6 - chr1 168401587 168401914 chr1,168401587,168401914,+,MER47A,DNA,TcMar-Tigger,1,366,0,168401587,168401914 -6 + chr1 168407239 168407274 chr1,168406050,168408359,+,L1MEg,LINE,L1,159,2636,-3510,168405892,168411869 -1 + chr1 168464214 168464373 chr1,168464193,168464575,-,THE1C,LTR,ERVL-MaLR,0,375,1,168464193,168464575 +5 - chr1 168485243 168485306 chr1,168485162,168485827,+,L1PA8,LINE,L1,635,1298,-5163,168484528,168490990 -3 + chr1 168485573 168485731 chr1,168485162,168485827,+,L1PA8,LINE,L1,635,1298,-5163,168484528,168490990 -3 + chr1 168763365 168763429 chr1,168763274,168763429,+,Plat_L3,LINE,CR1,2732,2891,-695,168760543,168764124 -5 + chr1 168763504 168763616 chr1,168763504,168763666,+,MIRb,SINE,MIR,25,188,-80,168763480,168763746 -2 + chr1 168786939 168787228 chr1,168786791,168787303,+,MLT1L,LTR,ERVL-MaLR,75,608,-2,168786717,168787305 +1 + chr1 168792331 168792421 chr1,168792237,168792421,+,L2,LINE,L2,2255,2448,-971,168789983,168793392 +2 + chr1 168903905 168904056 chr1,168903861,168904056,-,MIR3,SINE,MIR,-10,198,3,168903851,168904058 +5 - chr1 168904119 168904405 chr1,168904119,168904405,+,AluSc,SINE,Alu,2,287,-22,168904118,168904427 -6 + chr1 169056184 169056233 chr1,169056164,169056354,+,MIR,SINE,MIR,60,260,-2,169056105,169056356 -3 + chr1 169086955 169087005 chr1,169086938,169087033,+,MIR1_Amn,SINE,MIR,72,175,-55,169086867,169087088 -1 + chr1 169310693 169310771 chr1,169310693,169310856,-,MIR3,SINE,MIR,-21,187,22,169310672,169310877 -4 - chr1 169762929 169762989 chr1,169762394,169762989,+,MLT1E2,LTR,ERVL-MaLR,1,627,0,169762394,169762989 -5 + chr1 169764531 169764648 chr1,169764531,169764770,-,L2,LINE,L2,-809,2610,2363,169763722,169767132 +1 - chr1 170024222 170024283 chr1,170024222,170024296,+,Tigger15a,DNA,TcMar-Tigger,638,714,-1,170023585,170024297 +4 + chr1 170174403 170174451 chr1,170174213,170174451,+,L2b,LINE,L2,3122,3365,-10,170171092,170174461 +1 + chr1 170271603 170271633 chr1,170271370,170271633,+,UCON29,DNA,PiggyBac?,150,412,-27,170271221,170271660 -5 + chr1 170284139 170284208 chr1,170284105,170284379,-,MIR,SINE,MIR,0,268,2,170284105,170284380 +1 - chr1 170461965 170461993 chr1,170461965,170461993,+,A-rich,Low_complexity,Low_complexity,1,29,0,170461965,170461993 -6 + chr1 170510151 170510240 chr1,170510151,170510240,+,L2c,LINE,L2,3296,3386,-1,170506856,170510241 -6 + chr1 170517594 170517678 chr1,170517552,170517678,+,MIRb,SINE,MIR,17,138,-130,170517536,170517808 -4 + chr1 170531951 170531984 chr1,170531951,170531984,+,GA-rich,Low_complexity,Low_complexity,1,33,0,170531951,170531984 -6 + chr1 170587249 170587271 chr1,170587224,170587271,+,(CCTTTT)n,Simple_repeat,Simple_repeat,1,48,0,170587224,170587271 -5 + chr1 170598854 170599015 chr1,170598734,170599336,+,Tigger3c,DNA,TcMar-Tigger,1,602,0,170598734,170599336 +1 + chr1 170639109 170639181 chr1,170639080,170639181,-,AluSx,SINE,Alu,-5,307,206,170639075,170639386 -2 - chr1 170639181 170639745 chr1,170639181,170639745,+,LTR12F,LTR,ERV1,1,519,0,170639181,170639745 +6 + chr1 170639745 170639797 chr1,170639745,170639953,-,AluSx,SINE,Alu,-103,209,1,170639642,170639953 -4 - chr1 170646268 170646601 chr1,170645734,170646601,-,MER6,DNA,TcMar-Tigger,0,865,1,170645734,170646601 -2 - chr1 170646607 170646804 chr1,170646607,170646804,+,LTR81A,LTR,Gypsy,882,1088,-65,170645726,170646869 +6 + chr1 170646887 170647002 chr1,170646887,170647002,+,L2c,LINE,L2,3263,3387,0,170643625,170647002 +6 + chr1 171223997 171224222 chr1,171221156,171224222,+,HERVIP10B3-int,LTR,ERV1,2041,7603,0,171219116,171224222 -4 + chr1 171224222 171224284 chr1,171224222,171224819,+,LTR10C,LTR,ERV1,1,589,-2,171224222,171224821 -1 + chr1 171227651 171227788 chr1,171227538,171228186,-,MER57A-int,LTR,ERV1,-1351,4836,4220,171226187,171232405 +1 - chr1 171247580 171247723 chr1,171247276,171247774,-,L1PBa,LINE,L1,-6345,518,1,171240931,171247774 +5 - chr1 171251523 171251573 chr1,171251467,171251573,-,HERVK22-int,LTR,ERVK,-6730,107,10,171244737,171251582 +4 - chr1 171251608 171251748 chr1,171251608,171251748,-,LTR22B2,LTR,ERVK,-1,599,442,171251607,171252189 +6 - chr1 171251741 171251794 chr1,171251741,171251920,+,LTR22B2,LTR,ERVK,419,600,0,171251323,171251920 -1 + chr1 172138351 172138375 chr1,172138351,172138375,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,172138351,172138375 -6 + chr1 172752586 172752860 chr1,172752564,172752860,+,AluY,SINE,Alu,1,293,-18,172752564,172752878 +1 + chr1 173004282 173004435 chr1,173004056,173005429,-,L1M1,LINE,L1,-4423,2142,23,172999633,173005451 -3 - chr1 173016313 173016333 chr1,173016181,173016333,+,MIRb,SINE,MIR,17,165,-103,173016165,173016436 +2 + chr1 173016442 173016524 chr1,173016442,173016910,+,L3,LINE,CR1,2017,2448,-1651,173014426,173018561 +4 + chr1 173023498 173023573 chr1,173023448,173024764,-,ERVL-B4-int,LTR,ERVL,-669,5045,3607,173022779,173028370 -3 - chr1 173063896 173064015 chr1,173063896,173065419,+,L1M4c,LINE,L1,9,2152,-4516,173063888,173069935 +5 + chr1 173174300 173174424 chr1,173173514,173174424,-,THE1C-int,LTR,ERVL-MaLR,-629,1002,3,173172885,173174426 +5 - chr1 173174426 173174574 chr1,173174426,173174767,-,THE1C,LTR,ERVL-MaLR,0,375,1,173174426,173174767 +2 - chr1 173175122 173175314 chr1,173175122,173175314,-,MIRb,SINE,MIR,-69,199,6,173175053,173175319 +6 - chr1 173175339 173175414 chr1,173175339,173175414,+,L2a,LINE,L2,3359,3426,0,173171981,173175414 -6 + chr1 173417924 173417948 chr1,173417924,173417948,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,173417924,173417948 -6 + chr1 173417952 173418208 chr1,173417952,173418208,+,L2c,LINE,L2,3113,3357,-30,173414840,173418238 -5 + chr1 173442064 173442097 chr1,173442064,173442273,-,MER63B,DNA,hAT-Blackjack,0,436,238,173442064,173442510 +1 - chr1 173460378 173461362 chr1,173459784,173462166,+,L1PA11,LINE,L1,4,3156,-4447,173459781,173466613 -1 + chr1 173612624 173612772 chr1,173612572,173614262,+,SVA_D,Retroposon,SVA,11,1363,-23,173612562,173614285 +5 + chr1 173636997 173637030 chr1,173636997,173637030,+,GA-rich,Low_complexity,Low_complexity,1,35,0,173636997,173637030 +6 + chr1 173863248 173863261 chr1,173863024,173863261,+,AluSg7,SINE,Alu,1,292,-17,173863024,173863278 +1 + chr1 173863982 173864096 chr1,173863982,173864096,+,AluJo,SINE,Alu,170,296,-16,173863813,173864112 -5 + chr1 173864936 173865210 chr1,173864936,173865210,+,AluSz,SINE,Alu,1,297,-15,173864936,173865225 -5 + chr1 173867236 173867528 chr1,173867236,173867528,+,AluSx,SINE,Alu,1,299,-13,173867236,173867541 -6 + chr1 174009334 174009361 chr1,174009334,174009556,+,L2a,LINE,L2,3137,3327,-99,174006198,174009655 -2 + chr1 174015918 174016206 chr1,174015918,174016209,+,AluSx,SINE,Alu,1,291,-21,174015918,174016230 -1 + chr1 174115300 174115359 chr1,174115268,174115359,+,MLT1N2,LTR,ERVL-MaLR,389,490,-72,174114880,174115431 -5 + chr1 174115360 174115649 chr1,174115360,174115654,-,AluJr,SINE,Alu,-18,294,2,174115342,174115655 +5 - chr1 174121638 174121786 chr1,174121587,174122012,-,MLT1B,LTR,ERVL-MaLR,0,390,1,174121587,174122012 +5 - chr1 174122084 174122192 chr1,174122074,174122209,+,AluJr,SINE,Alu,165,298,-14,174121910,174122223 -3 + chr1 174159973 174160004 chr1,174159973,174160020,+,(TGC)n,Simple_repeat,Simple_repeat,1,48,0,174159973,174160020 -1 + chr1 174896958 174897346 chr1,174895443,174897346,-,L1PA5,LINE,L1,-1,6153,4244,174895442,174901589 -1 - chr1 174897777 174897996 chr1,174897707,174898001,+,AluSx1,SINE,Alu,1,305,-7,174897707,174898008 +5 + chr1 174948773 174948845 chr1,174948773,174948845,-,L2b,LINE,L2,-332,3043,2970,174948441,174951814 +6 - chr1 174948847 174948876 chr1,174948847,174949114,-,Charlie7a,DNA,hAT-Charlie,0,272,12,174948847,174949125 +1 - chr1 175203228 175203379 chr1,175202944,175203379,+,Charlie4a,DNA,hAT-Charlie,29,508,0,175202916,175203379 -5 + chr1 175203406 175203583 chr1,175203406,175203583,-,MER45A,DNA,hAT-Tip100,0,178,1,175203406,175203583 +6 - chr1 175203583 175203908 chr1,175203583,175204056,-,MLT1N2,LTR,ERVL-MaLR,-90,472,1,175203493,175204056 +2 - chr1 175320982 175321103 chr1,175320912,175321103,-,MIR3,SINE,MIR,-6,202,14,175320906,175321116 -2 - chr1 175333322 175333374 chr1,175332852,175333374,+,MER113,DNA,hAT-Charlie,1,517,-4,175332852,175333378 +2 + chr1 175335351 175335378 chr1,175335351,175335378,+,(GCTG)n,Simple_repeat,Simple_repeat,1,27,0,175335351,175335378 +6 + chr1 175539025 175539079 chr1,175539025,175539079,+,L2c,LINE,L2,3285,3338,-49,175535741,175539128 -6 + chr1 175556780 175556818 chr1,175556780,175557372,+,MLT1F2,LTR,ERVL-MaLR,4,560,0,175556777,175557372 -1 + chr1 175878815 175879022 chr1,175878812,175879022,+,MIRb,SINE,MIR,29,252,-16,175878784,175879038 +2 + chr1 175879305 175879465 chr1,175879305,175879465,+,MIR3,SINE,MIR,45,202,-6,175879261,175879471 +6 + chr1 175879801 175880078 chr1,175879801,175880078,-,MLT1I,LTR,ERVL-MaLR,0,411,98,175879801,175880175 -6 - chr1 175880199 175880301 chr1,175880165,175880301,-,MIR3,SINE,MIR,-42,166,32,175880123,175880332 -2 - chr1 175880327 175880468 chr1,175880327,175880512,+,MIRb,SINE,MIR,47,254,-14,175880281,175880526 +5 + chr1 175904880 175905085 chr1,175904880,175905085,-,MER34-int,LTR,ERV1,-1904,6303,6070,175902976,175911154 +6 - chr1 175908547 175908655 chr1,175907591,175908655,-,MER57A-int,LTR,ERV1,-1600,4587,3388,175905991,175912042 +4 - chr1 175908655 175908770 chr1,175908655,175908788,+,FLAM_C,SINE,Alu,1,133,-10,175908655,175908798 -2 + chr1 176017520 176017569 chr1,176017520,176017822,-,AluSz6,SINE,Alu,-8,304,3,176017512,176017824 -4 - chr1 176018446 176018516 chr1,176018446,176018516,-,Charlie15a,DNA,hAT-Charlie,-62,162,92,176018384,176018607 -6 - chr1 176018711 176018760 chr1,176018711,176018860,+,AluSx,SINE,Alu,123,271,-41,176018589,176018901 +5 + chr1 176218534 176218646 chr1,176218369,176218729,+,THE1D,LTR,ERVL-MaLR,1,381,0,176218369,176218729 +3 + chr1 176229089 176229101 chr1,176228681,176229101,-,L1MEf,LINE,L1,-3608,2711,2187,176225073,176231287 -2 - chr1 176229107 176229143 chr1,176229107,176229143,+,(GAATAG)n,Simple_repeat,Simple_repeat,1,39,0,176229107,176229143 +6 + chr1 176229151 176229330 chr1,176229151,176230785,+,L1PA13,LINE,L1,15,1843,-4942,176229137,176235727 +5 + chr1 177700661 177700720 chr1,177700661,177700720,-,MER5A,DNA,hAT-Charlie,-131,58,2,177700530,177700721 -6 - chr1 177700734 177700937 chr1,177700734,177700937,-,L3,LINE,CR1,-61,4038,3816,177700673,177704752 -6 - chr1 177701459 177701574 chr1,177701412,177702116,-,L2a,LINE,L2,0,3426,2639,177701412,177704754 -3 - chr1 177959147 177959291 chr1,177959147,177959291,-,MIR3,SINE,MIR,-23,185,42,177959124,177959332 +6 - chr1 177959245 177959378 chr1,177959245,177959378,+,MIRb,SINE,MIR,26,169,-99,177959220,177959477 -6 + chr1 177959604 177959826 chr1,177959604,177959826,-,MIRc,SINE,MIR,-16,252,12,177959588,177959837 +6 - chr1 177984229 177984248 chr1,177984229,177984248,+,(TGC)n,Simple_repeat,Simple_repeat,1,19,0,177984229,177984248 -6 + chr1 178091508 178092024 chr1,178090821,178092024,+,L1PA8,LINE,L1,4992,6169,-3,178085830,178092027 -5 + chr1 178092413 178092438 chr1,178092413,178092438,+,(AAGC)n,Simple_repeat,Simple_repeat,1,25,0,178092413,178092438 -6 + chr1 178092601 178092683 chr1,178092601,178092683,+,MIR3,SINE,MIR,119,202,-6,178092483,178092689 -6 + chr1 178093760 178093834 chr1,178093760,178093834,+,(GCCGCC)n,Simple_repeat,Simple_repeat,1,74,0,178093760,178093834 -6 + chr1 178499534 178499634 chr1,178499299,178499699,+,MLT2A2,LTR,ERVL,1,401,-52,178499299,178499751 -1 + chr1 178545463 178545568 chr1,178545463,178545568,-,MIRb,SINE,MIR,-72,196,91,178545391,178545658 -5 - chr1 178547329 178547490 chr1,178547329,178547490,-,MLT1A1,LTR,ERVL-MaLR,0,408,241,178547329,178547730 -6 - chr1 178547490 178547797 chr1,178547490,178547797,+,AluSx,SINE,Alu,1,305,-7,178547490,178547804 +6 + chr1 178547797 178548009 chr1,178547797,178548009,-,MLT1A1,LTR,ERVL-MaLR,-168,240,1,178547629,178548009 -6 - chr1 178548010 178548257 chr1,178548010,178548257,+,MER115,DNA,hAT-Tip100,284,534,-159,178547727,178548416 +6 + chr1 178548375 178548440 chr1,178548375,178548440,+,MER115,DNA,hAT-Tip100,628,693,0,178547748,178548440 +6 + chr1 178548858 178548889 chr1,178548858,178549111,+,MamRep434,DNA,TcMar-Tigger,60,311,-115,178548799,178549226 +5 + chr1 178725124 178725192 chr1,178725124,178725192,+,(CG)n,Simple_repeat,Simple_repeat,1,73,0,178725124,178725192 -6 + chr1 178725258 178725292 chr1,178725258,178725292,+,(GCG)n,Simple_repeat,Simple_repeat,1,34,0,178725258,178725292 -6 + chr1 178725436 178725450 chr1,178725436,178725450,+,G-rich,Low_complexity,Low_complexity,1,18,-64,178725436,178725514 -6 + chr1 178725450 178725473 chr1,178725450,178725473,+,(GGGA)n,Simple_repeat,Simple_repeat,1,23,0,178725450,178725473 -6 + chr1 178725473 178725518 chr1,178725473,178725518,+,G-rich,Low_complexity,Low_complexity,19,82,0,178725455,178725518 -6 + chr1 178726028 178726065 chr1,178726028,178726065,+,G-rich,Low_complexity,Low_complexity,1,37,0,178726028,178726065 -6 + chr1 179544391 179544703 chr1,179544391,179544703,+,AluSz6,SINE,Alu,1,312,0,179544391,179544703 -6 + chr1 179544786 179544933 chr1,179544786,179544933,-,MIRc,SINE,MIR,-67,201,21,179544719,179544953 +6 - chr1 179730287 179730397 chr1,179730287,179730397,-,7SK,RNA,RNA,-220,111,2,179730067,179730398 -6 - chr1 179835995 179836025 chr1,179835805,179836025,-,L1MEi,LINE,L1,-1923,289,52,179833882,179836076 +4 - chr1 179836072 179836124 chr1,179836072,179837495,-,LTR12C,LTR,ERV1,0,1579,3,179836072,179837497 +1 - chr1 179882204 179882227 chr1,179882204,179882227,+,(TCC)n,Simple_repeat,Simple_repeat,1,23,0,179882204,179882227 -6 + chr1 179941479 179941663 chr1,179941335,179941663,+,MLT2D,LTR,ERVL,1,338,-76,179941335,179941739 -4 + chr1 179941689 179941796 chr1,179941689,179942118,-,MLT1G3,LTR,ERVL-MaLR,-184,411,1,179941505,179942118 +1 - chr1 179953184 179953262 chr1,179953127,179953262,+,MIRb,SINE,MIR,1,128,-140,179953127,179953402 -5 + chr1 179953262 179953571 chr1,179953262,179953571,-,AluSg4,SINE,Alu,-1,309,1,179953261,179953571 +6 - chr1 179953571 179953680 chr1,179953571,179953680,+,MIRb,SINE,MIR,129,241,-27,179953443,179953707 -6 + chr1 179953875 179954160 chr1,179953875,179954160,-,L2b,LINE,L2,-2,3373,3073,179953873,179957232 +6 - chr1 180117140 180117315 chr1,180117102,180117539,-,MER70C,LTR,ERVL,-74,457,1,180117028,180117539 +5 - chr1 180122969 180123065 chr1,180122929,180123065,-,MLT1L,LTR,ERVL-MaLR,-6,604,362,180122923,180123426 +4 - chr1 180123088 180123218 chr1,180123088,180123218,-,MLT1L,LTR,ERVL-MaLR,-225,385,258,180122863,180123475 +6 - chr1 180558976 180559055 chr1,180558768,180559133,+,THE1A,LTR,ERVL-MaLR,1,355,0,180558768,180559133 +1 + chr1 180565697 180565876 chr1,180565697,180565876,-,L2b,LINE,L2,-19,3407,3205,180565678,180569080 -6 - chr1 180565906 180565941 chr1,180565906,180565941,-,U2,snRNA,snRNA,-153,35,1,180565753,180565941 -6 - chr1 180907801 180907979 chr1,180907605,180907979,-,MLT1A,LTR,ERVL-MaLR,-4,370,1,180907601,180907979 -1 - chr1 180907979 180908005 chr1,180907979,180908143,-,L2c,LINE,L2,-305,3082,2936,180907674,180911078 -4 - chr1 180908203 180908291 chr1,180908195,180908307,+,MER5A,DNA,hAT-Charlie,21,131,-58,180908175,180908365 +3 + chr1 180909106 180909166 chr1,180909106,180909439,+,L2c,LINE,L2,3024,3382,-5,180906083,180909444 +5 + chr1 180945822 180946100 chr1,180945822,180946131,+,AluSq2,SINE,Alu,1,311,-2,180945822,180946133 -2 + chr1 180954793 180954887 chr1,180954793,180955032,-,MIRb,SINE,MIR,-34,228,4,180954759,180955035 +1 - chr1 181174484 181174575 chr1,181174423,181174726,-,AluSx,SINE,Alu,-1,311,1,181174422,181174726 -1 - chr1 181175337 181175347 chr1,181174891,181175347,+,MLT1D,LTR,ERVL-MaLR,1,498,-7,181174891,181175354 +1 + chr1 181175710 181175834 chr1,181175710,181176230,-,L2a,LINE,L2,-21,3405,2791,181175689,181179020 -3 - chr1 181181889 181182208 chr1,181181591,181182325,+,MER50,LTR,ERV1,1,711,-23,181181591,181182348 +5 + chr1 181190471 181190600 chr1,181190450,181190600,-,MIR,SINE,MIR,-21,241,36,181190429,181190635 +5 - chr1 181190703 181190808 chr1,181190703,181190850,-,L2b,LINE,L2,0,3375,3217,181190703,181194066 +2 - chr1 181812725 181812832 chr1,181812725,181812832,+,MER81,DNA,hAT-Blackjack,5,113,-1,181812721,181812833 +6 + chr1 181812965 181813140 chr1,181812965,181813140,-,MER5A,DNA,hAT-Charlie,0,189,19,181812965,181813158 -6 - chr1 182062698 182064330 chr1,182062698,182064330,-,L1PA10,LINE,L1,-9,6159,4524,182062689,182068853 +6 - chr1 182064548 182064700 chr1,182064548,182064700,+,Charlie4z,DNA,hAT-Charlie,26,167,0,182064523,182064700 -6 + chr1 182068317 182068342 chr1,182068302,182068342,-,L2c,LINE,L2,0,3387,3347,182068302,182071688 +4 - chr1 182068342 182068370 chr1,182068342,182068594,+,MER112,DNA,hAT-Charlie,1,261,0,182068342,182068594 -2 + chr1 182128450 182128595 chr1,182128450,182128595,+,MIRc,SINE,MIR,22,191,-77,182128429,182128672 -6 + chr1 182130989 182131084 chr1,182130966,182131267,+,AluSz6,SINE,Alu,1,301,-11,182130966,182131278 -3 + chr1 182131172 182131241 chr1,182130966,182131267,+,AluSz6,SINE,Alu,1,301,-11,182130966,182131278 -3 + chr1 182131387 182131484 chr1,182131269,182131564,+,AluY,SINE,Alu,41,311,0,182131229,182131564 -3 + chr1 182131690 182131810 chr1,182131566,182131834,+,AluSc,SINE,Alu,33,300,-9,182131534,182131843 -3 + chr1 182133329 182133397 chr1,182133085,182133397,-,AluSp,SINE,Alu,0,313,1,182133085,182133397 +4 - chr1 182162848 182163015 chr1,182162641,182163015,+,MSTD,LTR,ERVL-MaLR,1,396,0,182162641,182163015 -4 + chr1 182163015 182163414 chr1,182163015,182163414,-,L2b,LINE,L2,-92,3283,2887,182162923,182166300 +6 - chr1 182203892 182203933 chr1,182203892,182203933,+,(ATGATG)n,Simple_repeat,Simple_repeat,1,41,0,182203892,182203933 -6 + chr1 182219511 182219688 chr1,182218465,182220629,+,L1PA7,LINE,L1,7,2173,-4326,182218459,182224955 -3 + chr1 182409301 182409360 chr1,182409301,182409425,+,ERVL-E-int,LTR,ERVL,182,301,-5366,182409120,182414791 +5 + chr1 182615672 182615756 chr1,182615672,182615756,-,MIR,SINE,MIR,-30,232,133,182615642,182615888 -6 - chr1 182615746 182615809 chr1,182615746,182615809,-,MIR,SINE,MIR,-188,74,12,182615558,182615820 -6 - chr1 182615815 182615969 chr1,182615815,182615969,-,L2a,LINE,L2,-41,3385,3226,182615774,182619194 -6 - chr1 182616032 182616340 chr1,182616032,182616340,-,MLT1N2,LTR,ERVL-MaLR,-31,531,211,182616001,182616550 -6 - chr1 182714313 182714430 chr1,182714100,182714430,+,L2a,LINE,L2,3078,3426,0,182711023,182714430 +2 + chr1 183141142 183141282 chr1,183141028,183141329,+,AluJr4,SINE,Alu,1,300,-12,183141028,183141341 -1 + chr1 183460891 183461136 chr1,183460891,183461136,-,AluJo,SINE,Alu,-17,295,59,183460874,183461194 +6 - chr1 183461432 183461521 chr1,183461432,183461521,+,(TTCT)n,Simple_repeat,Simple_repeat,1,92,0,183461432,183461521 -6 + chr1 183461478 183461553 chr1,183461478,183461553,+,(TTTTCTT)n,Simple_repeat,Simple_repeat,1,76,0,183461478,183461553 -6 + chr1 183469674 183469799 chr1,183469646,183469841,+,L2b,LINE,L2,3186,3422,-4,183466461,183469845 -3 + chr1 183471443 183471500 chr1,183471443,183471500,+,(CGCC)n,Simple_repeat,Simple_repeat,1,58,0,183471443,183471500 -6 + chr1 183754418 183754569 chr1,183754364,183754569,-,MLT1J2,LTR,ERVL-MaLR,0,448,245,183754364,183754813 +5 - chr1 184332679 184332775 chr1,184332679,184332775,+,Charlie16a,DNA,hAT-Charlie,132,227,-115,184332548,184332890 +6 + chr1 185001530 185001627 chr1,185001530,185007555,+,L1PA3,LINE,L1,125,6155,0,185001406,185007555 +4 + chr1 185007798 185007862 chr1,185007798,185007862,-,MIRc,SINE,MIR,-50,218,157,185007748,185008018 -6 - chr1 185007892 185007973 chr1,185007892,185007973,+,MLT1J2,LTR,ERVL-MaLR,108,188,-324,185007785,185008297 +6 + chr1 185008076 185008174 chr1,185008076,185008174,+,MLT1J2,LTR,ERVL-MaLR,343,439,-9,185007734,185008183 +6 + chr1 185008329 185008481 chr1,185008329,185008481,-,MIRb,SINE,MIR,-88,180,5,185008241,185008485 -6 - chr1 185292468 185292774 chr1,185292468,185292774,-,AluSz,SINE,Alu,-11,301,1,185292457,185292774 +6 - chr1 185293628 185293735 chr1,185293628,185293735,+,L4_A_Mam,LINE,RTE-X,1537,1659,-3331,185292092,185297066 -6 + chr1 185293997 185294086 chr1,185293997,185294086,+,L4_A_Mam,LINE,RTE-X,3498,3589,-1401,185290500,185295487 -6 + chr1 185294109 185294302 chr1,185294109,185294302,-,L1ME1,LINE,L1,-57,6122,5916,185294052,185300217 +6 - chr1 185294307 185294372 chr1,185294307,185294462,-,FAM,SINE,Alu,-19,166,1,185294288,185294462 +1 - chr1 185318270 185318345 chr1,185318270,185318345,-,AmnSINE1,SINE,5S-Deu-L2,-197,378,297,185318073,185318641 -6 - chr1 185321157 185321388 chr1,185320917,185322247,-,LTR12C,LTR,ERV1,0,1579,2,185320917,185322248 +5 - chr1 185334352 185334387 chr1,185334352,185334627,+,MER103C,DNA,hAT-Charlie,7,297,0,185334346,185334627 -2 + chr1 185518651 185520196 chr1,185517831,185520196,+,LTR49-int,LTR,ERV1,1593,5838,-920,185516239,185521116 +1 + chr1 185520663 185520986 chr1,185520663,185521102,+,LTR44,LTR,ERV1,25,519,0,185520639,185521102 +5 + chr1 185558372 185558675 chr1,185558324,185558739,-,MLT1J2,LTR,ERVL-MaLR,-3,445,1,185558321,185558739 +5 - chr1 185563307 185563328 chr1,185563307,185563573,-,Tigger19a,DNA,TcMar-Tigger,-1,322,47,185563306,185563619 +2 - chr1 185565474 185565631 chr1,185564844,185565720,-,L4_A_Mam,LINE,RTE-X,-104,4886,3989,185564740,185569708 +1 - chr1 185621461 185621526 chr1,185620397,185621526,+,L1MC1,LINE,L1,4724,5856,-652,185615674,185622178 -4 + chr1 185621526 185621586 chr1,185621526,185621872,+,L1MC1,LINE,L1,6063,6408,-100,185615464,185621972 -2 + chr1 185622727 185622769 chr1,185622568,185622769,+,L1MD,LINE,L1,2398,2606,-3540,185620171,185626309 -4 + chr1 185626492 185626555 chr1,185626392,185626944,+,LTR26E,LTR,ERV1,1,622,0,185626392,185626944 -3 + chr1 185655067 185655210 chr1,185655067,185655234,-,MER5B,DNA,hAT-Charlie,0,178,1,185655067,185655234 -4 - chr1 185656477 185656497 chr1,185656279,185656497,+,LTR37A,LTR,ERV1,49,268,-158,185656231,185656655 +2 + chr1 185656497 185657053 chr1,185656497,185657053,-,MER77,LTR,ERVL,-4,600,1,185656493,185657053 -6 - chr1 185657053 185657168 chr1,185657053,185657203,+,LTR37A,LTR,ERV1,269,408,-18,185656785,185657221 +5 + chr1 186176886 186176908 chr1,186176886,186177018,+,AluY,SINE,Alu,1,132,-179,186176886,186177197 -2 + chr1 186177045 186177302 chr1,186177023,186177320,+,AluSc8,SINE,Alu,2,298,-13,186177022,186177333 -1 + chr1 186436451 186436519 chr1,186436451,186436519,-,L2,LINE,L2,-660,2759,2693,186435791,186439211 -6 - chr1 186466288 186466367 chr1,186466062,186466491,+,L3,LINE,CR1,770,1236,-2863,186465293,186469354 +3 + chr1 186470271 186470291 chr1,186469220,186471511,+,L1MC4a,LINE,L1,5357,7690,-192,186463864,186471703 +5 + chr1 187092842 187092930 chr1,187092686,187092930,-,AluJo,SINE,Alu,-64,248,2,187092622,187092931 -1 - chr1 187303466 187303496 chr1,187303242,187303496,+,L2a,LINE,L2,3158,3425,-1,187300085,187303497 +2 + chr1 187359740 187360323 chr1,187359740,187360707,-,L1ME3A,LINE,L1,-101,6072,5039,187359639,187365745 -5 - chr1 187470071 187470239 chr1,187469564,187470557,+,MER4-int,LTR,ERV1,1,1111,-5487,187469564,187476044 +5 + chr1 187480294 187480436 chr1,187480294,187480436,-,MamSINE1,SINE,tRNA-RTE,-126,164,19,187480168,187480454 -6 - chr1 187641226 187641269 chr1,187641123,187641443,+,MER61A,LTR,ERV1,1,341,0,187641123,187641443 +1 + chr1 187641376 187641443 chr1,187641123,187641443,+,MER61A,LTR,ERV1,1,341,0,187641123,187641443 +1 + chr1 187641443 187641481 chr1,187641443,187642121,+,MER61-int,LTR,ERV1,1,707,-4510,187641443,187646631 +1 + chr1 187641616 187642121 chr1,187641443,187642121,+,MER61-int,LTR,ERV1,1,707,-4510,187641443,187646631 +1 + chr1 187642150 187643633 chr1,187642150,187643633,+,MER61-int,LTR,ERV1,1655,3862,-1153,187640496,187644786 +6 + chr1 188219625 188219645 chr1,188219625,188219645,+,(CT)n,Simple_repeat,Simple_repeat,1,20,0,188219625,188219645 +6 + chr1 188508538 188508665 chr1,188508534,188508709,+,LTR79,LTR,ERVL,7,181,-346,188508528,188509055 +1 + chr1 188529196 188529293 chr1,188528901,188529293,+,L1MEc,LINE,L1,57,461,-5939,188528845,188535232 +2 + chr1 188535756 188535766 chr1,188534848,188535766,+,L2a,LINE,L2,1966,2897,-522,188532883,188536288 +2 + chr1 188535773 188535858 chr1,188535773,188536130,+,L2a,LINE,L2,3042,3418,-8,188532732,188536138 +4 + chr1 188705938 188706029 chr1,188705938,188706029,+,L2a,LINE,L2,3301,3395,-31,188702638,188706060 -6 + chr1 188706139 188706285 chr1,188706139,188706459,-,MSTD,LTR,ERVL-MaLR,0,396,1,188706139,188706459 +2 - chr1 188710811 188710880 chr1,188710752,188711521,+,L1MCa,LINE,L1,1262,2056,-4695,188709491,188716216 -1 + chr1 188869477 188869748 chr1,188869449,188869975,-,MLT1F2,LTR,ERVL-MaLR,-18,542,1,188869431,188869975 +5 - chr1 188905688 188905926 chr1,188905457,188906002,+,MLT2A2,LTR,ERVL,1,544,-10,188905457,188906012 +1 + chr1 189036726 189036993 chr1,189036726,189036993,-,L1M4b,LINE,L1,-6288,579,299,189030438,189037291 -6 - chr1 189036999 189037072 chr1,189036999,189037072,-,L1M4b,LINE,L1,-6785,82,8,189030214,189037079 -6 - chr1 189791685 189791763 chr1,189791685,189792009,+,MER44A,DNA,TcMar-Tigger,1,337,-2,189791685,189792011 +4 + chr1 189868092 189868212 chr1,189868092,189868581,+,LTR33B,LTR,ERVL,10,478,-25,189868083,189868606 -1 + chr1 189868327 189868528 chr1,189868092,189868581,+,LTR33B,LTR,ERVL,10,478,-25,189868083,189868606 -1 + chr1 190302707 190302791 chr1,190302707,190302820,+,L3,LINE,CR1,3818,3935,-164,190298890,190302984 +4 + chr1 190362063 190362252 chr1,190361863,190362252,+,MLT1A,LTR,ERVL-MaLR,11,374,0,190361853,190362252 +2 + chr1 190493838 190493905 chr1,190493780,190493905,+,MLT1N2,LTR,ERVL-MaLR,1,125,-437,190493780,190494342 +2 + chr1 190624890 190625033 chr1,190624059,190625328,-,L1MC4,LINE,L1,-3,8039,6791,190624056,190632118 -1 - chr1 190738438 190738510 chr1,190738330,190738639,+,L2,LINE,L2,1854,2195,-1224,190736477,190739863 +3 + chr1 190791514 190791563 chr1,190791250,190791652,+,MER74C,LTR,ERVL,1,460,0,190791250,190791652 +3 + chr1 190793506 190793547 chr1,190793469,190793547,+,LTR78B,LTR,ERV1,919,993,-303,190792551,190793850 +2 + chr1 190799801 190799978 chr1,190799553,190799978,+,L1MC,LINE,L1,4904,5366,-813,190794650,190800791 +2 + chr1 190799978 190800019 chr1,190799978,190800019,+,(GT)n,Simple_repeat,Simple_repeat,1,41,0,190799978,190800019 +6 + chr1 190800019 190800328 chr1,190800019,190800328,+,L1MC,LINE,L1,5367,5681,-498,190794653,190800826 +6 + chr1 190800381 190800622 chr1,190800381,190800622,-,L2a,LINE,L2,-252,3174,2915,190800129,190803536 -6 - chr1 190800875 190801170 chr1,190800875,190801170,+,AluJb,SINE,Alu,3,292,-20,190800873,190801190 +6 + chr1 191151510 191152394 chr1,191151245,191152394,+,LTR12E,LTR,ERV1,1,1322,0,191151245,191152394 +1 + chr1 191152464 191154634 chr1,191152464,191155164,+,MER4B-int,LTR,ERV1,198,4299,-2377,191152267,191157541 +5 + chr1 191228436 191228467 chr1,191228436,191228524,-,MLT1J2-int,LTR,ERVL-MaLR,-53,1334,1244,191228383,191229767 +1 - chr1 191858724 191858758 chr1,191858724,191858758,+,(TTTAT)n,Simple_repeat,Simple_repeat,1,34,0,191858724,191858758 -6 + chr1 191875495 191875683 chr1,191875289,191875683,-,MLT1A1,LTR,ERVL-MaLR,-4,404,5,191875285,191875687 -1 - chr1 191977239 191977359 chr1,191977070,191977782,+,MER67C,LTR,ERV1,1,702,-9,191977070,191977791 +3 + chr1 192009839 192010301 chr1,192009170,192010301,-,Tigger3b,DNA,TcMar-Tigger,-3,1228,1,192009167,192010301 -2 - chr1 192010321 192010477 chr1,192010321,192010477,+,L1MC5,LINE,L1,9067,9228,-76,192001255,192010553 +6 + chr1 192010501 192010684 chr1,192010501,192010684,+,MER5A,DNA,hAT-Charlie,2,189,0,192010500,192010684 +6 + chr1 192010771 192011083 chr1,192010771,192011083,+,L1M5,LINE,L1,3508,3842,-2304,192007264,192013387 +6 + chr1 192529579 192529715 chr1,192528890,192530203,-,L2a,LINE,L2,-467,2952,1473,192528423,192531675 -1 - chr1 192537754 192537765 chr1,192537201,192537765,-,L1PA7,LINE,L1,-1,6153,5593,192537200,192543357 -2 - chr1 192537765 192538102 chr1,192537765,192538652,+,L1PA7,LINE,L1,4659,5551,-603,192533107,192539255 +5 + chr1 193090868 193090923 chr1,193090868,193090923,+,A-rich,Low_complexity,Low_complexity,1,57,0,193090868,193090923 -6 + chr1 193304874 193304938 chr1,193304874,193305045,-,LTR12C,LTR,ERV1,0,1579,1408,193304874,193306452 -4 - chr1 193678894 193679005 chr1,193678679,193679087,+,MSTA,LTR,ERVL-MaLR,1,428,0,193678679,193679087 +1 + chr1 193685580 193685789 chr1,193685410,193685863,-,MLT1C,LTR,ERVL-MaLR,0,467,1,193685410,193685863 +3 - chr1 194198538 194198670 chr1,194198538,194198670,+,L1ME2,LINE,L1,6018,6162,-2,194192521,194198672 +6 + chr1 194350943 194351005 chr1,194350129,194351005,+,L1MEg,LINE,L1,686,1539,-4545,194349444,194355550 +1 + chr1 194351120 194351209 chr1,194351120,194351209,+,AluSz,SINE,Alu,2,90,-222,194351119,194351431 +6 + chr1 194352285 194352376 chr1,194352285,194352376,-,AluSx,SINE,Alu,-61,251,161,194352224,194352536 -6 - chr1 194352377 194352426 chr1,194352377,194352441,-,FLAM_C,SINE,Alu,-77,56,2,194352300,194352442 -5 - chr1 197447429 197447469 chr1,197447002,197447560,-,MLT1F2,LTR,ERVL-MaLR,0,560,3,197447002,197447562 +1 - chr1 197757371 197757401 chr1,197757371,197757550,+,Charlie17a,DNA,hAT-Charlie,2,217,0,197757370,197757550 +4 + chr1 198598766 198598868 chr1,198598677,198598953,-,MLT1I,LTR,ERVL-MaLR,-7,404,109,198598670,198599061 +1 - chr1 198657559 198657715 chr1,198657559,198657715,+,UCON26,Unknown,Unknown,67,223,-120,198657493,198657835 -6 + chr1 198807949 198808020 chr1,198807949,198808020,+,MER2B,DNA,TcMar-Tigger,3,77,-259,198807947,198808279 -6 + chr1 198808049 198808243 chr1,198808049,198808266,+,AluJb,SINE,Alu,82,298,-14,198807968,198808280 -2 + chr1 198827110 198827216 chr1,198827110,198827948,-,LTR1A2,LTR,ERV1,0,837,1,198827110,198827948 +1 - chr1 198898947 198899064 chr1,198898947,198899064,+,MIR3,SINE,MIR,77,202,-6,198898871,198899070 -6 + chr1 198900309 198900354 chr1,198900309,198900354,+,GA-rich,Low_complexity,Low_complexity,1,47,0,198900309,198900354 -6 + chr1 198983890 198984029 chr1,198983866,198984165,-,AluSq4,SINE,Alu,-10,301,1,198983856,198984165 -3 - chr1 198984753 198984969 chr1,198984753,198984969,+,MIRb,SINE,MIR,39,254,-14,198984715,198984983 +6 + chr1 198984991 198985137 chr1,198984991,198985137,-,MIR,SINE,MIR,-1,267,98,198984990,198985234 -6 - chr1 198985317 198985400 chr1,198985317,198985477,+,MIRb,SINE,MIR,96,258,-4,198985222,198985481 +5 + chr1 199006445 199007091 chr1,199006445,199007091,-,HAL1,LINE,L1,-298,2209,1550,199006147,199008640 +6 - chr1 199007105 199007235 chr1,199007105,199007235,-,HAL1,LINE,L1,-1034,1473,1338,199006071,199008572 +6 - chr1 199007237 199007313 chr1,199007237,199007313,-,L2a,LINE,L2,-1,3425,3348,199007236,199010660 +6 - chr1 199016133 199016465 chr1,199015960,199016535,+,MLT1E1A,LTR,ERVL-MaLR,1,679,-1,199015960,199016536 +1 + chr1 199020818 199020869 chr1,199020781,199020869,-,L2a,LINE,L2,0,3426,3338,199020781,199024206 +4 - chr1 199076569 199076735 chr1,199076569,199077267,+,L1MEc,LINE,L1,1649,2390,-3929,199074921,199081196 +5 + chr1 199161423 199161485 chr1,199161342,199161488,+,MamGypLTR1c,LTR,Gypsy,3,149,-664,199161340,199162152 +3 + chr1 199162465 199162570 chr1,199162442,199162607,-,AluJo,SINE,Alu,-13,299,137,199162429,199162743 -3 - chr1 199391412 199392037 chr1,199391412,199392037,+,L1MDa,LINE,L1,28,667,-5966,199391385,199398003 +6 + chr1 199392037 199392469 chr1,199392037,199392469,-,MLT2A2,LTR,ERVL,0,453,1,199392037,199392469 -6 - chr1 199392469 199392910 chr1,199392469,199392910,+,L1MDa,LINE,L1,668,1170,-5370,199391802,199398280 +6 + chr1 199392896 199393069 chr1,199392896,199393069,+,L1MDa,LINE,L1,1479,1658,-4975,199391418,199398044 +6 + chr1 199393136 199393221 chr1,199393136,199393221,+,GA-rich,Low_complexity,Low_complexity,1,85,0,199393136,199393221 +6 + chr1 199393225 199393307 chr1,199393225,199393738,+,L1MDa,LINE,L1,1650,2191,-4442,199391576,199398180 +5 + chr1 200342545 200342919 chr1,200342545,200342919,-,MLT1D,LTR,ERVL-MaLR,-55,412,17,200342490,200342935 +6 - chr1 200342928 200343410 chr1,200342928,200343732,+,L1MC4,LINE,L1,7119,8039,-3,200335810,200343735 -2 + chr1 200371046 200371165 chr1,200370891,200371178,+,AluJr,SINE,Alu,1,293,-19,200370891,200371197 -3 + chr1 200478007 200478133 chr1,200478007,200478133,-,MIRc,SINE,MIR,-120,148,15,200477887,200478147 -6 - chr1 200690309 200690430 chr1,200690284,200690586,-,AluSx,SINE,Alu,-9,303,2,200690275,200690587 -3 - chr1 200693753 200693793 chr1,200693733,200693793,-,AluSq2,SINE,Alu,-14,299,240,200693719,200694032 -2 - chr1 200693793 200693831 chr1,200693793,200693831,+,(GCGATCTCA)n,Simple_repeat,Simple_repeat,1,38,0,200693793,200693831 +6 + chr1 200693831 200694059 chr1,200693831,200694059,-,AluSq2,SINE,Alu,-85,228,1,200693746,200694059 -6 - chr1 200694114 200694177 chr1,200694114,200694177,+,MLT1K,LTR,ERVL-MaLR,526,595,0,200693589,200694177 +6 + chr1 201024003 201024085 chr1,201024003,201024118,-,MIR3,SINE,MIR,-114,154,36,201023889,201024153 -4 - chr1 201025422 201025502 chr1,201025316,201025502,-,MIRb,SINE,MIR,-7,255,40,201025309,201025541 -2 - chr1 201025990 201026045 chr1,201025990,201026045,+,L3b,LINE,CR1,4967,5017,-215,201021024,201026260 +6 + chr1 201027255 201027435 chr1,201027255,201027435,-,MIR3,SINE,MIR,-17,191,9,201027238,201027443 -6 - chr1 201027508 201027815 chr1,201027508,201027815,+,AluSz6,SINE,Alu,2,307,-5,201027507,201027820 +5 + chr1 201027852 201028070 chr1,201027852,201028070,+,MIRb,SINE,MIR,29,245,-23,201027824,201028093 +6 + chr1 201028426 201028544 chr1,201028426,201028544,-,MIR,SINE,MIR,-29,233,111,201028397,201028654 -6 - chr1 201028561 201028724 chr1,201028561,201028724,+,MLT1I,LTR,ERVL-MaLR,6,173,-238,201028556,201028962 +6 + chr1 201028739 201028792 chr1,201028739,201028841,+,MLT1I,LTR,ERVL-MaLR,299,404,-7,201028441,201028848 +5 + chr1 201031136 201031175 chr1,201031082,201031175,+,L3,LINE,CR1,2770,2855,-1244,201028313,201032419 +1 + chr1 201036527 201036675 chr1,201036527,201036875,-,L2c,LINE,L2,-3,3384,3026,201036524,201039900 -5 - chr1 201041855 201041886 chr1,201041737,201041886,+,L2c,LINE,L2,2969,3147,-240,201038769,201042126 +2 + chr1 201041886 201041933 chr1,201041886,201042041,-,MER5B,DNA,hAT-Charlie,-3,175,2,201041883,201042042 -4 - chr1 201222299 201222425 chr1,201222299,201222433,+,MIR3,SINE,MIR,10,141,-67,201222290,201222500 -2 + chr1 201464805 201464894 chr1,201464805,201465111,-,AluSx,SINE,Alu,-8,304,1,201464797,201465111 +2 - chr1 201465061 201465111 chr1,201464805,201465111,-,AluSx,SINE,Alu,-8,304,1,201464797,201465111 +4 - chr1 201518703 201518777 chr1,201518614,201518777,-,LTR49,LTR,ERV1,-10,585,428,201518604,201519204 -1 - chr1 201518777 201519080 chr1,201518777,201519080,-,AluSz,SINE,Alu,-12,300,1,201518765,201519080 -6 - chr1 201519080 201519488 chr1,201519080,201519488,-,LTR49,LTR,ERV1,-168,427,1,201518912,201519488 -6 - chr1 201519489 201519571 chr1,201519489,201519571,-,L1MB8,LINE,L1,-336,5842,5756,201519153,201525326 -6 - chr1 201519571 201519616 chr1,201519571,201519616,-,MER84,LTR,ERV1,0,507,471,201519571,201520086 -6 - chr1 201519616 201519927 chr1,201519616,201519927,+,AluSq2,SINE,Alu,2,304,-9,201519615,201519936 +6 + chr1 201519927 201520015 chr1,201519927,201520015,-,MER84,LTR,ERV1,-37,470,388,201519890,201520402 -6 - chr1 201520597 201520650 chr1,201520597,201520995,-,MER84,LTR,ERV1,-106,401,1,201520491,201520995 -4 - chr1 201530094 201530348 chr1,201530056,201530348,-,AluSq2,SINE,Alu,-13,300,1,201530043,201530348 -2 - chr1 201533448 201533608 chr1,201533400,201533621,-,AluJb,SINE,Alu,-10,302,87,201533390,201533707 -5 - chr1 201723294 201723563 chr1,201723124,201723563,-,L1MB4,LINE,L1,-712,5468,5025,201722412,201728587 +5 - chr1 201723566 201723665 chr1,201723566,201723665,+,MER5A,DNA,hAT-Charlie,51,161,-28,201723516,201723693 -6 + chr1 201723668 201724128 chr1,201723668,201724128,-,L3,LINE,CR1,-46,4053,3568,201723622,201727695 +6 - chr1 201816854 201816967 chr1,201816674,201816973,-,AluSz,SINE,Alu,-9,303,1,201816665,201816973 +5 - chr1 201820492 201820531 chr1,201820492,201820531,+,A-rich,Low_complexity,Low_complexity,1,40,0,201820492,201820531 -6 + chr1 201828951 201829000 chr1,201828886,201829000,+,MIR3,SINE,MIR,20,132,-76,201828867,201829076 -4 + chr1 201829211 201829238 chr1,201829211,201829238,+,(GGC)n,Simple_repeat,Simple_repeat,1,27,0,201829211,201829238 -1 + chr1 201995779 201995918 chr1,201995779,201995918,-,MIRc,SINE,MIR,-23,245,61,201995756,201995978 +6 - chr1 202000247 202000327 chr1,202000247,202000483,-,MIRc,SINE,MIR,-13,255,7,202000234,202000489 +2 - chr1 202014886 202014906 chr1,202014595,202014906,-,AluSx1,SINE,Alu,0,312,2,202014595,202014907 -2 - chr1 202605238 202605293 chr1,202605238,202605387,-,MamRep564,Unknown,Unknown,-124,233,69,202605114,202605455 -5 - chr1 202632762 202632911 chr1,202632762,202632990,+,MIRb,SINE,MIR,19,259,-9,202632744,202632999 +5 + chr1 202810238 202810281 chr1,202810166,202810281,+,L1ME2z,LINE,L1,6307,6437,-7,202803860,202810288 -5 + chr1 202811848 202811913 chr1,202811848,202812056,+,L2c,LINE,L2,3180,3378,-9,202808669,202812065 +5 + chr1 202812023 202812056 chr1,202811848,202812056,+,L2c,LINE,L2,3180,3378,-9,202808669,202812065 +5 + chr1 202873057 202873192 chr1,202873025,202873192,-,AluSx,SINE,Alu,-6,306,136,202873019,202873327 -2 - chr1 202874710 202874957 chr1,202874710,202874957,-,AluSp,SINE,Alu,-6,307,60,202874704,202875016 -6 - chr1 203127259 203127306 chr1,203127157,203127306,+,MIR1_Amn,SINE,MIR,84,239,-29,203127074,203127335 -5 + chr1 203144694 203144754 chr1,203144580,203144754,+,MIRc,SINE,MIR,3,186,-82,203144578,203144836 -5 + chr1 203149966 203150052 chr1,203149944,203150071,-,L2b,LINE,L2,-14,3412,3257,203149930,203153327 +3 - chr1 203288024 203288141 chr1,203288024,203288141,-,L2b,LINE,L2,-12,3363,3240,203288012,203291380 -6 - chr1 203288754 203288801 chr1,203288754,203288808,-,MIR,SINE,MIR,-44,218,165,203288710,203288972 -5 - chr1 203298794 203298847 chr1,203298794,203298847,-,MER102b,DNA,hAT-Charlie,0,341,289,203298794,203299135 +6 - chr1 203298915 203299179 chr1,203298915,203299179,-,Charlie8,DNA,hAT-Charlie,-2148,280,2,203296767,203299180 +6 - chr1 203299603 203299689 chr1,203299603,203299689,-,L3b,LINE,CR1,-194,5038,4950,203299409,203304638 +6 - chr1 203299755 203299879 chr1,203299755,203299879,+,AluSg,SINE,Alu,1,124,-186,203299755,203300065 -6 + chr1 203299879 203299912 chr1,203299879,203299912,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,203299879,203299912 -6 + chr1 203299912 203300101 chr1,203299912,203300101,+,AluSg,SINE,Alu,125,310,0,203299788,203300101 -6 + chr1 203304935 203305169 chr1,203304935,203305169,-,L2c,LINE,L2,-57,3330,3106,203304878,203308274 +6 - chr1 204032447 204032590 chr1,204032398,204032590,+,MLT1F2,LTR,ERVL-MaLR,203,406,-204,204032196,204032794 -5 + chr1 204033705 204033867 chr1,204033636,204033973,-,MLT1D,LTR,ERVL-MaLR,-2,503,165,204033634,204034137 +3 - chr1 204041144 204041174 chr1,204041144,204041174,+,(CAAA)n,Simple_repeat,Simple_repeat,1,31,0,204041144,204041174 -6 + chr1 204141565 204141710 chr1,204141481,204141710,+,MIRc,SINE,MIR,16,236,-32,204141466,204141742 +2 + chr1 204142059 204142116 chr1,204142059,204142116,-,MIR3,SINE,MIR,-18,190,133,204142041,204142248 -6 - chr1 204142833 204142925 chr1,204142833,204142925,-,MIR3,SINE,MIR,-15,193,88,204142818,204143012 -6 - chr1 204603035 204603151 chr1,204602869,204603524,-,L2b,LINE,L2,0,3375,2687,204602869,204606210 -1 - chr1 204616083 204616118 chr1,204615940,204616118,+,MER5A,DNA,hAT-Charlie,1,185,-4,204615940,204616122 +2 + chr1 204626775 204626882 chr1,204626755,204626882,+,MER112,DNA,hAT-Charlie,13,155,-106,204626743,204626988 +1 + chr1 204626936 204626966 chr1,204626936,204626966,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,204626936,204626966 +6 + chr1 204627102 204627274 chr1,204627102,204627274,-,MIRb,SINE,MIR,-17,251,57,204627085,204627330 -6 - chr1 204628386 204628458 chr1,204628386,204628458,+,MIRb,SINE,MIR,82,173,-95,204628305,204628553 +6 + chr1 204629183 204629316 chr1,204629183,204629316,+,L2c,LINE,L2,3022,3160,-227,204626162,204629543 +6 + chr1 204629387 204629413 chr1,204629387,204629413,+,L1PA16,LINE,L1,5767,5792,-374,204623621,204629787 +6 + chr1 204629413 204629712 chr1,204629413,204629756,+,THE1A,LTR,ERVL-MaLR,1,355,0,204629413,204629756 +5 + chr1 205379304 205379325 chr1,205379304,205379385,-,L1MC5,LINE,L1,-294,9010,8922,205379010,205388306 -4 - chr1 205382027 205382144 chr1,205382001,205382188,-,AluJb,SINE,Alu,-12,300,126,205381989,205382313 -3 - chr1 205385233 205385502 chr1,205385206,205385502,-,AluSz6,SINE,Alu,-11,301,1,205385195,205385502 -2 - chr1 205385512 205385629 chr1,205385512,205385629,-,L2b,LINE,L2,0,3375,3253,205385512,205388881 -6 - chr1 205386306 205386603 chr1,205386306,205386603,-,AluYm1,SINE,Alu,-15,296,1,205386291,205386603 -6 - chr1 205386713 205386838 chr1,205386713,205386838,+,MER91B,DNA,hAT-Tip100,52,186,-4,205386662,205386842 +6 + chr1 205386906 205386979 chr1,205386906,205386979,-,L1MC5,LINE,L1,-12,9292,9219,205386894,205396197 -6 - chr1 205387127 205387166 chr1,205387127,205387166,+,(CTTTT)n,Simple_repeat,Simple_repeat,1,39,0,205387127,205387166 +6 + chr1 205387225 205387440 chr1,205387225,205387525,+,L1ME4c,LINE,L1,512,827,-3,205386714,205387528 +5 + chr1 205455935 205456013 chr1,205455935,205456013,+,(CT)n,Simple_repeat,Simple_repeat,1,81,0,205455935,205456013 +6 + chr1 205467186 205467271 chr1,205467186,205467271,+,MIR3,SINE,MIR,116,201,-7,205467071,205467278 +6 + chr1 205467395 205467692 chr1,205467395,205467692,-,AluSz6,SINE,Alu,-13,299,1,205467382,205467692 -6 - chr1 205467693 205467863 chr1,205467693,205467863,-,MIR,SINE,MIR,-65,197,15,205467628,205467877 -6 - chr1 205468022 205468056 chr1,205468022,205468056,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,205468022,205468056 +6 + chr1 205468093 205468451 chr1,205468093,205468451,+,L3,LINE,CR1,3318,3719,-380,205464776,205468831 +6 + chr1 205468453 205468760 chr1,205468453,205468760,+,AluSx1,SINE,Alu,1,309,-3,205468453,205468763 +6 + chr1 205468764 205468905 chr1,205468764,205468905,+,MIRb,SINE,MIR,92,245,-23,205468673,205468928 +6 + chr1 206118111 206118191 chr1,206118111,206118191,-,MIRc,SINE,MIR,-135,133,55,206117976,206118245 -6 - chr1 206378864 206378884 chr1,206378553,206378884,+,LTR12,LTR,ERV1,3,445,-222,206378551,206379106 -5 + chr1 206491310 206491333 chr1,206491310,206491333,+,(CA)n,Simple_repeat,Simple_repeat,1,23,0,206491310,206491333 -6 + chr1 206491893 206492101 chr1,206491893,206492101,-,MIRb,SINE,MIR,-33,235,26,206491860,206492126 +6 - chr1 206492435 206492562 chr1,206492435,206492562,-,MER5B,DNA,hAT-Charlie,-50,128,10,206492385,206492571 +6 - chr1 206542165 206542576 chr1,206542165,206542576,+,MSTB,LTR,ERVL-MaLR,1,426,0,206542165,206542576 +6 + chr1 206542648 206542864 chr1,206542648,206542864,-,MER113A,DNA,hAT-Charlie,-6,308,89,206542642,206542952 -6 - chr1 206542895 206542930 chr1,206542895,206542930,-,L2a,LINE,L2,-4,3422,3389,206542891,206546318 -6 - chr1 206542930 206543237 chr1,206542930,206543237,+,AluJo,SINE,Alu,2,297,-15,206542929,206543252 +6 + chr1 206543237 206543253 chr1,206543237,206543253,-,L2a,LINE,L2,-38,3388,3370,206543199,206546622 -6 - chr1 206543554 206543592 chr1,206543554,206543592,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,206543554,206543592 +6 + chr1 206543754 206544051 chr1,206543754,206544051,-,AluSg,SINE,Alu,-12,298,1,206543742,206544051 -6 - chr1 206544087 206544224 chr1,206544087,206544224,+,MIRb,SINE,MIR,18,151,-117,206544070,206544341 +6 + chr1 206544354 206544463 chr1,206544354,206544463,+,L2,LINE,L2,2825,2941,-478,206541530,206544941 +6 + chr1 207127093 207127239 chr1,207127093,207127239,+,MER91B,DNA,hAT-Tip100,1,216,-3308,207127093,207130547 -6 + chr1 207127364 207127397 chr1,207127364,207127397,+,(TAA)n,Simple_repeat,Simple_repeat,1,33,0,207127364,207127397 -6 + chr1 207127400 207127486 chr1,207127400,207127540,-,MIR,SINE,MIR,-39,223,73,207127361,207127612 +1 - chr1 207264997 207265036 chr1,207264533,207265055,+,MLT2B3,LTR,ERVL,1,501,-53,207264533,207265108 +3 + chr1 207301770 207301822 chr1,207301718,207301822,-,L2b,LINE,L2,-14,3361,3257,207301704,207305078 -2 - chr1 207308467 207308985 chr1,207308013,207308985,+,HAL1,LINE,L1,1225,2292,-215,207306789,207309200 +2 + chr1 207372559 207372712 chr1,207372419,207372712,-,L1MEi,LINE,L1,-1286,926,602,207371133,207373313 -1 - chr1 207372719 207372854 chr1,207372719,207372854,+,MLT1H,LTR,ERVL-MaLR,3,124,-425,207372717,207373279 +6 + chr1 207373022 207373206 chr1,207373022,207373206,+,L1ME3Cz,LINE,L1,790,970,-27,207372233,207373233 +6 + chr1 207600659 207600855 chr1,207600659,207600879,-,MIR,SINE,MIR,-31,231,6,207600628,207600884 +2 - chr1 207605962 207605983 chr1,207605962,207606437,-,MLT1J,LTR,ERVL-MaLR,0,512,1,207605962,207606437 +2 - chr1 207802839 207802921 chr1,207802839,207802921,-,MIRc,SINE,MIR,-13,255,176,207802826,207803096 +6 - chr1 207803446 207803607 chr1,207803446,207803607,-,MIRb,SINE,MIR,-76,192,8,207803370,207803614 +6 - chr1 207805232 207805360 chr1,207805232,207805360,+,MIR3,SINE,MIR,24,158,-50,207805209,207805410 -6 + chr1 207805508 207805667 chr1,207805508,207805667,+,AluSc8,SINE,Alu,134,296,-15,207805375,207805682 -6 + chr1 207807751 207807847 chr1,207807751,207807847,+,G-rich,Low_complexity,Low_complexity,1,94,0,207807751,207807847 -6 + chr1 207808183 207808222 chr1,207808183,207808222,+,GA-rich,Low_complexity,Low_complexity,1,42,0,207808183,207808222 -6 + chr1 207810732 207810837 chr1,207810732,207810837,+,MIRc,SINE,MIR,115,232,-36,207810618,207810873 -6 + chr1 207811259 207811297 chr1,207811259,207811297,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,207811259,207811297 -6 + chr1 207811297 207811316 chr1,207811297,207811316,+,(TATTTT)n,Simple_repeat,Simple_repeat,3,61,0,207811295,207811316 -6 + chr1 207811350 207811387 chr1,207811350,207811387,+,L3b,LINE,CR1,5009,5045,-187,207806342,207811574 -6 + chr1 207811823 207811953 chr1,207811823,207811953,-,MIR3,SINE,MIR,-25,183,37,207811798,207811989 +6 - chr1 207812867 207812982 chr1,207812867,207812982,+,L2a,LINE,L2,3283,3400,-26,207809585,207813008 -6 + chr1 207813217 207813391 chr1,207813217,207813391,+,MIRb,SINE,MIR,32,229,-39,207813186,207813430 -6 + chr1 207874890 207874935 chr1,207874887,207874935,+,L2c,LINE,L2,3340,3387,0,207871548,207874935 -4 + chr1 207878880 207879073 chr1,207878821,207879292,-,MLT1F,LTR,ERVL-MaLR,-89,459,2,207878732,207879293 +1 - chr1 208626741 208626828 chr1,208626574,208626828,-,L3,LINE,CR1,-3,4096,3849,208626571,208630676 +5 - chr1 208729143 208729241 chr1,208728728,208729241,-,MER74A,LTR,ERVL,-31,527,1,208728697,208729241 -2 - chr1 208733098 208733144 chr1,208732986,208733144,-,MIRb,SINE,MIR,0,268,82,208732986,208733225 -2 - chr1 208972761 208972776 chr1,208972761,208973132,-,L1ME4c,LINE,L1,-73,757,368,208972688,208973499 -4 - chr1 209151451 209151505 chr1,209151451,209151639,-,MER39,LTR,ERV1,0,707,368,209151451,209152006 +2 - chr1 209368415 209368469 chr1,209368369,209368541,-,MIR3,SINE,MIR,-30,178,1,209368339,209368541 -3 - chr1 209373534 209373559 chr1,209373534,209373646,+,MamTip2,DNA,hAT-Tip100,24,151,-154,209373511,209373800 +5 + chr1 209379427 209379502 chr1,209379367,209379502,+,L2c,LINE,L2,2996,3144,-243,209376372,209379745 +2 + chr1 209428997 209429295 chr1,209428997,209429295,-,AluJb,SINE,Alu,-17,295,1,209428980,209429295 -1 - chr1 209432250 209432290 chr1,209432250,209432290,+,(GCC)n,Simple_repeat,Simple_repeat,1,40,0,209432250,209432290 +6 + chr1 209432291 209432331 chr1,209432291,209432331,+,(AGC)n,Simple_repeat,Simple_repeat,1,40,0,209432291,209432331 +6 + chr1 209547492 209547580 chr1,209547388,209547725,-,L3,LINE,CR1,-233,3866,3529,209547155,209551253 +1 - chr1 209566912 209566987 chr1,209566828,209567200,-,THE1B,LTR,ERVL-MaLR,0,364,1,209566828,209567200 +3 - chr1 209567536 209567559 chr1,209567392,209567559,-,MER5A,DNA,hAT-Charlie,-2,187,1,209567390,209567559 +4 - chr1 209567578 209567673 chr1,209567578,209567919,-,MLT1I,LTR,ERVL-MaLR,-39,372,47,209567539,209567965 +1 - chr1 209661364 209661567 chr1,209661313,209661623,-,MLT1J2,LTR,ERVL-MaLR,-8,440,101,209661305,209661723 +5 - chr1 209662911 209663024 chr1,209662696,209663024,-,L3b,LINE,CR1,-554,3545,3296,209662142,209666319 +4 - chr1 210233995 210234031 chr1,210233995,210234031,+,(AATAAG)n,Simple_repeat,Simple_repeat,1,36,0,210233995,210234031 -6 + chr1 211183058 211183104 chr1,211182946,211183413,-,LTR32,LTR,ERVL,0,457,1,211182946,211183413 +1 - chr1 211390564 211390584 chr1,211390438,211390584,-,HAL1,LINE,L1,-113,2394,2248,211390325,211392831 -2 - chr1 211390586 211390666 chr1,211390586,211390666,+,L2,LINE,L2,2264,2348,-1071,211388323,211391737 +6 + chr1 211396779 211396830 chr1,211396779,211396830,+,A-rich,Low_complexity,Low_complexity,1,52,0,211396779,211396830 +6 + chr1 211398036 211398310 chr1,211397998,211398310,-,AluSx,SINE,Alu,0,312,1,211397998,211398310 -2 - chr1 211398310 211398638 chr1,211398310,211398718,-,L1MA3,LINE,L1,-161,6144,5716,211398149,211404433 -5 - chr1 211399258 211399312 chr1,211398719,211399312,+,MER11C,LTR,ERVK,476,1071,0,211398244,211399312 +1 + chr1 211399312 211399437 chr1,211399312,211400193,+,HERVK11-int,LTR,ERVK,1,851,-7102,211399312,211407295 +4 + chr1 211432768 211433077 chr1,211432768,211433077,-,AluSx,SINE,Alu,0,312,1,211432768,211433077 -6 - chr1 211433086 211433393 chr1,211433086,211433393,-,AluSq2,SINE,Alu,-6,307,1,211433080,211433393 -6 - chr1 211433586 211433663 chr1,211433586,211433663,+,L1PA16,LINE,L1,6091,6166,0,211427496,211433663 +6 + chr1 211433711 211433871 chr1,211433711,211433871,+,AluJb,SINE,Alu,1,130,-182,211433711,211434053 +6 + chr1 211433871 211433902 chr1,211433871,211433902,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,211433871,211433902 +6 + chr1 211433902 211434074 chr1,211433902,211434074,+,AluJb,SINE,Alu,131,301,-11,211433772,211434085 +6 + chr1 211434245 211434293 chr1,211434245,211434293,+,(TTAT)n,Simple_repeat,Simple_repeat,1,49,0,211434245,211434293 +6 + chr1 211434293 211434566 chr1,211434293,211434566,-,AluJr,SINE,Alu,-34,278,6,211434259,211434571 -6 - chr1 211434566 211434583 chr1,211434566,211434583,+,(TTAT)n,Simple_repeat,Simple_repeat,2,17,0,211434565,211434583 +6 + chr1 211434683 211434979 chr1,211434683,211434979,+,AluJo,SINE,Alu,1,287,-25,211434683,211435004 +6 + chr1 211583163 211583232 chr1,211583163,211583232,+,MIR,SINE,MIR,81,150,-58,211583083,211583290 -6 + chr1 211636269 211636332 chr1,211636269,211636332,+,L1M3,LINE,L1,5725,5787,-396,211630545,211636728 -6 + chr1 211636334 211636445 chr1,211636334,211636461,+,FLAM_A,SINE,Alu,1,128,-14,211636334,211636475 -2 + chr1 211639695 211639754 chr1,211639670,211639754,-,MamTip3,DNA,hAT-Tip100,-407,93,14,211639263,211639767 -1 - chr1 211640115 211640269 chr1,211640115,211640269,+,MIR,SINE,MIR,16,192,-70,211640100,211640339 +6 + chr1 211677084 211677154 chr1,211677084,211677455,+,MSTD,LTR,ERVL-MaLR,1,396,0,211677084,211677455 +4 + chr1 211681764 211681864 chr1,211681601,211681931,+,MLT1A0,LTR,ERVL-MaLR,1,354,-11,211681601,211681942 +1 + chr1 211683550 211683624 chr1,211682918,211683777,-,L2c,LINE,L2,-547,2872,1893,211682371,211685669 -3 - chr1 211684913 211684952 chr1,211684913,211685075,-,MIRb,SINE,MIR,-5,263,52,211684908,211685126 -4 - chr1 211685645 211685806 chr1,211685645,211685831,+,MIRb,SINE,MIR,42,215,-47,211685604,211685878 +4 + chr1 211686752 211687054 chr1,211686752,211687054,-,AluSx1,SINE,Alu,0,312,19,211686752,211687072 -5 - chr1 211687054 211687459 chr1,211687054,211687501,+,LTR2,LTR,ERV1,1,463,0,211687054,211687501 +5 + chr1 211687526 211687767 chr1,211687501,211687848,+,Harlequin-int,LTR,ERV1,1,347,-7500,211687501,211695348 +3 + chr1 211689947 211690103 chr1,211689034,211694119,+,Harlequin-int,LTR,ERV1,1806,6896,0,211687229,211694119 +5 + chr1 211839464 211839533 chr1,211839411,211839909,+,MLT1J,LTR,ERVL-MaLR,3,510,-2,211839409,211839911 +3 + chr1 211839659 211839909 chr1,211839411,211839909,+,MLT1J,LTR,ERVL-MaLR,3,510,-2,211839409,211839911 +2 + chr1 211839914 211839933 chr1,211839914,211840143,+,MIRb,SINE,MIR,17,254,-14,211839898,211840157 +5 + chr1 211846047 211846441 chr1,211845943,211846533,-,HSMAR2,DNA,TcMar-Mariner,-779,523,3,211845164,211846535 -5 - chr1 211853562 211853703 chr1,211853179,211853822,-,L1MC4,LINE,L1,0,8042,7403,211853179,211861224 -5 - chr1 212168207 212168265 chr1,212168017,212168342,+,MLT1A1,LTR,ERVL-MaLR,3,406,-2,212168015,212168344 +1 + chr1 212168594 212168715 chr1,212168573,212168872,-,AluY,SINE,Alu,-13,298,1,212168560,212168872 -3 - chr1 212190049 212190259 chr1,212190049,212190484,+,SVA_F,Retroposon,SVA,422,857,-518,212189628,212191002 +5 + chr1 212238941 212238977 chr1,212238941,212239019,-,L2a,LINE,L2,-69,3318,3245,212238872,212242263 +1 - chr1 212297493 212297593 chr1,212297493,212297593,+,(AGTCTAT)n,Simple_repeat,Simple_repeat,1,108,0,212297493,212297593 +6 + chr1 212331458 212331468 chr1,212331200,212331468,-,AluJr,SINE,Alu,-52,260,1,212331148,212331468 +4 - chr1 212357916 212358102 chr1,212357819,212358102,-,AluJo,SINE,Alu,-35,277,1,212357784,212358102 -2 - chr1 212467667 212467738 chr1,212467541,212467738,-,Tigger19a,DNA,TcMar-Tigger,-10,313,121,212467531,212467858 +4 - chr1 212555843 212556016 chr1,212555841,212556016,+,L1ME1,LINE,L1,5996,6178,-1,212549846,212556017 +2 + chr1 212558962 212559003 chr1,212558962,212559003,+,(CG)n,Simple_repeat,Simple_repeat,1,43,0,212558962,212559003 -6 + chr1 212625708 212625757 chr1,212625708,212625757,+,(GCA)n,Simple_repeat,Simple_repeat,1,50,0,212625708,212625757 -6 + chr1 212653999 212654080 chr1,212653976,212654080,+,MamTip2,DNA,hAT-Tip100,44,140,-165,212653933,212654245 -5 + chr1 212664587 212664599 chr1,212664389,212664599,-,MIRb,SINE,MIR,-43,225,3,212664346,212664601 +4 - chr1 212852387 212852567 chr1,212852387,212852567,+,AluSz,SINE,Alu,9,193,-119,212852379,212852686 -6 + chr1 212852989 212853207 chr1,212852989,212853207,-,AluJb,SINE,Alu,-18,294,67,212852971,212853273 +6 - chr1 212853207 212853269 chr1,212853207,212853269,+,AluSp,SINE,Alu,240,301,-12,212852968,212853281 -6 + chr1 212853409 212853427 chr1,212853409,212853427,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,212853409,212853427 -6 + chr1 212854039 212854309 chr1,212854039,212854345,+,AluSp,SINE,Alu,1,312,-1,212854039,212854346 -2 + chr1 212856624 212856648 chr1,212856624,212856648,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,212856624,212856648 -6 + chr1 212857840 212858012 chr1,212857840,212858012,+,MER41D,LTR,ERV1,384,557,0,212857457,212858012 -6 + chr1 213817751 213818498 chr1,213817741,213818498,+,Tigger1,DNA,TcMar-Tigger,1,743,-1675,213817741,213820173 -5 + chr1 213818490 213818583 chr1,213818490,213818583,+,Tigger1,DNA,TcMar-Tigger,2326,2418,0,213816165,213818583 -6 + chr1 213818588 213818657 chr1,213818588,213818657,+,MIRc,SINE,MIR,161,247,-15,213818428,213818672 -6 + chr1 213819030 213819171 chr1,213819030,213819171,-,MIR,SINE,MIR,-11,251,95,213819019,213819265 +6 - chr1 213819386 213819502 chr1,213819386,213819502,+,MER5A,DNA,hAT-Charlie,50,164,-25,213819337,213819527 -6 + chr1 213819550 213819705 chr1,213819550,213819705,+,MIRb,SINE,MIR,91,246,-22,213819460,213819727 -6 + chr1 213822154 213822433 chr1,213822154,213823045,+,L2a,LINE,L2,2064,2913,-506,213820091,213823551 -2 + chr1 213835916 213836042 chr1,213835916,213836042,-,L1M5,LINE,L1,-1488,4658,4537,213834428,213840578 +6 - chr1 213839738 213839797 chr1,213839683,213839925,+,MIR,SINE,MIR,23,262,0,213839661,213839925 -3 + chr1 213840832 213840924 chr1,213840832,213840924,+,L3,LINE,CR1,3969,4062,-37,213836864,213840961 -6 + chr1 213894663 213894693 chr1,213894505,213894693,-,MIR,SINE,MIR,-54,208,22,213894451,213894714 +5 - chr1 213895432 213895706 chr1,213895432,213895706,-,MLT1J2,LTR,ERVL-MaLR,-118,330,1,213895314,213895706 +5 - chr1 213895709 213895970 chr1,213895709,213897033,-,MLT1J2-int,LTR,ERVL-MaLR,-3,1384,1,213895706,213897033 +1 - chr1 213915935 213915970 chr1,213915840,213915970,+,MIRc,SINE,MIR,125,265,-3,213915716,213915973 -5 + chr1 213916041 213916099 chr1,213916041,213916165,-,MLT1N2,LTR,ERVL-MaLR,-10,552,437,213916031,213916601 +2 - chr1 213937254 213937423 chr1,213936987,213937500,+,MLT1D,LTR,ERVL-MaLR,1,505,0,213936987,213937500 -1 + chr1 213955023 213955239 chr1,213954856,213955358,-,MER1A,DNA,hAT-Charlie,0,529,1,213954856,213955358 +1 - chr1 213965304 213965481 chr1,213965040,213965536,-,L1PA7,LINE,L1,-5,6149,5653,213965035,213971188 +1 - chr1 213965894 213965962 chr1,213965774,213965962,-,MIR,SINE,MIR,0,262,67,213965774,213966028 +5 - chr1 213984709 213984766 chr1,213984709,213984766,+,(GGTGGT)n,Simple_repeat,Simple_repeat,1,57,0,213984709,213984766 -6 + chr1 213985816 213985863 chr1,213985816,213985863,+,(CTC)n,Simple_repeat,Simple_repeat,1,52,0,213985816,213985863 -6 + chr1 214344172 214344410 chr1,214343730,214345048,-,MER21-int,LTR,ERVL,-2900,1291,2,214340830,214345049 +5 - chr1 214357486 214357534 chr1,214357486,214357534,+,(AATG)n,Simple_repeat,Simple_repeat,1,51,0,214357486,214357534 -6 + chr1 216079965 216080041 chr1,216079818,216080813,-,L2c,LINE,L2,-733,2686,1614,216079085,216082426 -3 - chr1 216086892 216086917 chr1,216086892,216087071,+,L2a,LINE,L2,2111,2293,-1126,216084782,216088197 +5 + chr1 216194051 216194131 chr1,216193884,216194131,+,LTR16,LTR,ERVL,207,538,0,216193678,216194131 +1 + chr1 216194133 216194229 chr1,216194133,216194484,+,HERV16-int,LTR,ERVL,5,370,-4626,216194129,216199110 +4 + chr1 216195743 216195860 chr1,216194494,216195860,+,ERV3-16A3_I-int,LTR,ERVL,2550,3912,-1314,216191945,216197174 +2 + chr1 216195865 216195925 chr1,216195865,216195953,+,MIR,SINE,MIR,115,204,-58,216195751,216196011 +4 + chr1 217784962 217785120 chr1,217784892,217785262,-,MLT1C,LTR,ERVL-MaLR,0,467,93,217784892,217785354 +1 - chr1 217892900 217892926 chr1,217892609,217893154,-,Tigger7,DNA,TcMar-Tigger,-1937,554,1,217890672,217893154 -1 - chr1 217911894 217911981 chr1,217911894,217912029,-,MIRb,SINE,MIR,-38,230,92,217911856,217912120 -4 - chr1 217919774 217919853 chr1,217919774,217919853,-,MIRc,SINE,MIR,-67,163,77,217919707,217919929 -6 - chr1 217920436 217920804 chr1,217920436,217920840,+,MLT1C,LTR,ERVL-MaLR,22,457,-10,217920415,217920850 +5 + chr1 218043505 218043521 chr1,218043354,218043521,-,MIRc,SINE,MIR,-33,235,67,218043321,218043587 -1 - chr1 218043544 218043704 chr1,218043544,218043704,+,L2a,LINE,L2,3255,3426,0,218040290,218043704 +6 + chr1 218043873 218044043 chr1,218043873,218044043,-,L1MA10,LINE,L1,-1,6333,6169,218043872,218050211 -6 - chr1 218044073 218044363 chr1,218044073,218044363,+,AluJb,SINE,Alu,1,295,-17,218044073,218044380 +6 + chr1 218046140 218046253 chr1,218046140,218046283,+,MIR,SINE,MIR,9,126,-136,218046132,218046419 +4 + chr1 218051155 218051262 chr1,218051125,218051422,-,AluJb,SINE,Alu,-8,304,1,218051117,218051422 -3 - chr1 218058869 218059017 chr1,218058869,218059017,-,L2a,LINE,L2,-2,3424,3258,218058867,218062274 -6 - chr1 218059018 218059140 chr1,218059018,218059220,+,MER46C,DNA,TcMar-Tigger,1,218,-120,218059018,218059340 +5 + chr1 218523353 218523450 chr1,218523301,218523474,-,AluSc,SINE,Alu,-5,304,132,218523296,218523605 -3 - chr1 218525717 218525756 chr1,218525717,218525756,+,A-rich,Low_complexity,Low_complexity,1,39,0,218525717,218525756 +6 + chr1 218912853 218912915 chr1,218912853,218912915,-,LTR79,LTR,ERVL,-426,101,38,218912427,218912952 +6 - chr1 219222261 219222462 chr1,219222261,219222462,-,HERVL40-int,LTR,ERVL,-4753,777,571,219217508,219223032 +6 - chr1 219222716 219223079 chr1,219222716,219223079,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,219222716,219223079 +6 - chr1 219223079 219223187 chr1,219223079,219223420,-,HERVL40-int,LTR,ERVL,-5131,399,46,219217948,219223465 +2 - chr1 219225312 219225323 chr1,219225243,219225323,+,MIRc,SINE,MIR,70,148,-120,219225174,219225443 -4 + chr1 219270774 219270863 chr1,219270178,219270863,-,LTR9A1,LTR,ERV1,-3,725,1,219270175,219270863 -1 - chr1 219270950 219271243 chr1,219270950,219271243,-,AluSp,SINE,Alu,-18,295,1,219270932,219271243 -6 - chr1 219271789 219271909 chr1,219271789,219271909,+,L1M4a1,LINE,L1,1,124,-2455,219271789,219274364 +6 + chr1 219271902 219272490 chr1,219271902,219272490,+,L1M4a1,LINE,L1,269,880,-1699,219271634,219274189 +6 + chr1 219272490 219272785 chr1,219272490,219272785,+,AluSx1,SINE,Alu,3,292,-20,219272488,219272805 +6 + chr1 219272785 219273111 chr1,219272785,219273111,+,L1M4a1,LINE,L1,881,1233,-1346,219271905,219274457 +6 + chr1 219409734 219409825 chr1,219409734,219409825,-,MLT1J1,LTR,ERVL-MaLR,-219,225,129,219409515,219409953 +6 - chr1 219411718 219411912 chr1,219410469,219411912,+,LTR12C,LTR,ERV1,3,1579,0,219410467,219411912 -4 + chr1 219435242 219435338 chr1,219435242,219435338,-,MLT1L,LTR,ERVL-MaLR,-100,510,409,219435142,219435746 +6 - chr1 219435340 219435413 chr1,219435340,219435428,-,LTR85a,LTR,Gypsy?,-590,112,18,219434750,219435445 +2 - chr1 219557192 219557235 chr1,219557111,219557537,-,MSTC,LTR,ERVL-MaLR,0,428,1,219557111,219557537 -1 - chr1 219557564 219557662 chr1,219557537,219557662,+,MIRc,SINE,MIR,118,251,-17,219557420,219557679 +2 + chr1 220359731 220359760 chr1,220359680,220359760,-,MIR,SINE,MIR,-7,255,175,220359673,220359934 +5 - chr1 220360134 220360183 chr1,220360015,220360196,+,L2c,LINE,L2,2655,2840,-579,220357361,220360775 -1 + chr1 220401122 220403422 chr1,220400049,220403422,-,L1PA16,LINE,L1,-1663,5252,1892,220398386,220405313 -1 - chr1 220403833 220404033 chr1,220403833,220404076,+,MIRb,SINE,MIR,1,256,-12,220403833,220404088 +5 + chr1 220825620 220825774 chr1,220825478,220825774,+,MER33,DNA,hAT-Charlie,1,293,-31,220825478,220825805 +1 + chr1 220825891 220826044 chr1,220825891,220826044,+,L1MB5,LINE,L1,5998,6169,-2,220819894,220826046 +6 + chr1 220828769 220828911 chr1,220828769,220828911,-,Helitron3Na_Mam,RC,Helitron,-94,392,236,220828675,220829146 +6 - chr1 220829255 220829442 chr1,220829216,220829506,-,L2b,LINE,L2,-15,3360,3041,220829201,220832546 -1 - chr1 220830693 220830734 chr1,220830623,220830734,+,MIR3,SINE,MIR,52,163,-45,220830572,220830779 +2 + chr1 220831142 220831187 chr1,220831086,220831187,-,MER102b,DNA,hAT-Charlie,-14,327,231,220831072,220831417 -2 - chr1 220831187 220831383 chr1,220831187,220831673,-,MLT2B2,LTR,ERVL,0,515,1,220831187,220831673 -4 - chr1 220832113 220832146 chr1,220832080,220832146,+,L2c,LINE,L2,3170,3237,-150,220828911,220832296 +2 + chr1 220832763 220832858 chr1,220832578,220832872,+,AluSq2,SINE,Alu,3,294,-19,220832576,220832891 -5 + chr1 220833018 220833157 chr1,220832979,220833157,+,MIR3,SINE,MIR,13,200,-8,220832967,220833165 -4 + chr1 221330080 221330193 chr1,221329819,221330193,+,L1M4c,LINE,L1,1147,1797,-4871,221328673,221335064 -5 + chr1 221330193 221330488 chr1,221330193,221330488,+,AluJb,SINE,Alu,2,296,-16,221330192,221330504 -6 + chr1 221330488 221330579 chr1,221330488,221330579,+,L1M4c,LINE,L1,1380,1459,-5290,221329109,221335869 -6 + chr1 221330579 221330870 chr1,221330579,221330870,-,AluSz,SINE,Alu,-21,291,1,221330558,221330870 +6 - chr1 221330870 221331079 chr1,221330870,221331079,+,L1M4c,LINE,L1,1460,1669,-5080,221329411,221336159 -6 + chr1 221331079 221331149 chr1,221331079,221331149,-,Tigger7,DNA,TcMar-Tigger,0,2491,2402,221331079,221333550 +6 - chr1 221331152 221331664 chr1,221331152,221331664,-,Tigger7,DNA,TcMar-Tigger,-1972,519,1,221329180,221331664 +6 - chr1 221331666 221332235 chr1,221331666,221332235,+,L1M4c,LINE,L1,1675,2284,-4465,221329992,221336700 -6 + chr1 221332300 221332628 chr1,221332300,221332628,+,L1MB2,LINE,L1,5831,6171,0,221326470,221332628 -6 + chr1 221332635 221332695 chr1,221332635,221332695,+,MIRb,SINE,MIR,29,83,-185,221332607,221332880 -5 + chr1 221332695 221333335 chr1,221332695,221333335,-,LTR9,LTR,ERV1,0,612,1,221332695,221333335 +6 - chr1 221333335 221333406 chr1,221333335,221333406,+,MIRb,SINE,MIR,84,156,-112,221333252,221333518 -6 + chr1 221336158 221336270 chr1,221336158,221336270,+,MIR3,SINE,MIR,22,140,-68,221336137,221336338 -6 + chr1 221508559 221509170 chr1,221507900,221509958,+,L1PA15-16,LINE,L1,4311,6365,-504,221503590,221510462 +1 + chr1 221883800 221883888 chr1,221883778,221884198,-,MLT2B1,LTR,ERVL,-40,480,1,221883738,221884198 +3 - chr1 221918592 221918712 chr1,221918435,221918738,+,AluSx3,SINE,Alu,1,304,-7,221918435,221918745 -1 + chr1 221966341 221966356 chr1,221965923,221966356,+,LTR7Y,LTR,ERV1,1,472,0,221965923,221966356 +1 + chr1 221966356 221966502 chr1,221966356,221969342,+,HERVH-int,LTR,ERV1,1,2987,-4726,221966356,221974068 +1 + chr1 221968348 221968496 chr1,221966356,221969342,+,HERVH-int,LTR,ERV1,1,2987,-4726,221966356,221974068 +1 + chr1 221978360 221978506 chr1,221975431,221978506,-,HERVH-int,LTR,ERV1,-4726,2987,1,221970705,221978506 +4 - chr1 221978508 221978523 chr1,221978508,221978957,-,LTR7,LTR,ERV1,-2,448,1,221978506,221978957 +1 - chr1 221984054 221984324 chr1,221983906,221984324,-,LTR41,LTR,ERVL,-365,403,1,221983541,221984324 -2 - chr1 221984634 221984964 chr1,221984634,221985978,+,HSMAR2,DNA,TcMar-Mariner,2,1300,-2,221984633,221985980 +5 + chr1 222064685 222064763 chr1,222064600,222064953,-,THE1B,LTR,ERVL-MaLR,0,364,1,222064600,222064953 +1 - chr1 222218379 222218489 chr1,222218171,222218577,+,MSTB1,LTR,ERVL-MaLR,8,432,0,222218164,222218577 -3 + chr1 222452738 222452899 chr1,222452681,222452925,+,L2c,LINE,L2,3079,3322,-65,222449603,222452990 -5 + chr1 222454039 222454104 chr1,222453931,222454104,+,MIRb,SINE,MIR,45,229,-39,222453887,222454143 -4 + chr1 222477252 222477304 chr1,222477164,222477584,-,MER1A,DNA,hAT-Charlie,-90,439,1,222477074,222477584 +5 - chr1 222479174 222479185 chr1,222478885,222479185,-,AluJr,SINE,Alu,-16,296,1,222478869,222479185 +5 - chr1 222479296 222479398 chr1,222479296,222479398,-,MER8,DNA,TcMar-Tigger,-2,237,137,222479294,222479534 +6 - chr1 222479398 222479558 chr1,222479398,222479587,+,AluJb,SINE,Alu,117,304,-8,222479282,222479595 -2 + chr1 222480303 222480426 chr1,222480183,222480451,+,AluJr4,SINE,Alu,40,307,-5,222480144,222480456 -3 + chr1 222489586 222489608 chr1,222489415,222489608,-,MER1A,DNA,hAT-Charlie,-281,248,56,222489134,222489663 +5 - chr1 222490123 222490220 chr1,222489974,222490259,+,AluJb,SINE,Alu,11,294,-18,222489964,222490277 -5 + chr1 222492074 222492197 chr1,222491916,222492210,+,AluJr,SINE,Alu,5,294,-18,222491912,222492228 -3 + chr1 222590351 222590407 chr1,222590351,222590708,+,L3,LINE,CR1,3606,3976,-123,222586746,222590831 +4 + chr1 222592300 222592527 chr1,222592300,222592527,+,MLT1H1,LTR,ERVL-MaLR,333,555,0,222591968,222592527 +5 + chr1 222592571 222593032 chr1,222592571,222593606,-,L1MEf,LINE,L1,-3321,2998,1832,222589250,222595437 -5 - chr1 222658954 222659203 chr1,222658954,222659203,+,L1ME4c,LINE,L1,206,465,-365,222658749,222659568 -6 + chr1 222660600 222661512 chr1,222660600,222661619,+,Tigger2b_Pri,DNA,TcMar-Tigger,1,1068,0,222660600,222661619 -1 + chr1 222827279 222827311 chr1,222827194,222827398,-,Tigger19a,DNA,TcMar-Tigger,-92,231,11,222827102,222827408 -5 - chr1 222836923 222836939 chr1,222836807,222836939,+,MIRc,SINE,MIR,18,164,-104,222836790,222837043 +2 + chr1 222836939 222837384 chr1,222836939,222837432,+,MLT1J,LTR,ERVL-MaLR,1,477,-35,222836939,222837467 +5 + chr1 222899781 222899865 chr1,222899584,222899887,-,AluJo,SINE,Alu,-20,292,1,222899564,222899887 -3 - chr1 223144831 223144920 chr1,223144831,223144920,-,MamRTE1,LINE,RTE-BovB,-2609,1203,1100,223142222,223146019 -6 - chr1 223186831 223186948 chr1,223186808,223186978,-,AluJb,SINE,Alu,-15,297,128,223186793,223187105 -3 - chr1 223187935 223188154 chr1,223187593,223188455,+,L1MD1,LINE,L1,5788,6625,-8,223181806,223188463 +5 + chr1 223952302 223952720 chr1,223952302,223952720,-,MER1A,DNA,hAT-Charlie,-90,439,1,223952212,223952720 +6 - chr1 223952966 223953119 chr1,223952966,223953119,-,LTR41,LTR,ERVL,-2,766,614,223952964,223953732 +6 - chr1 223953122 223953406 chr1,223953122,223953406,+,AluJr,SINE,Alu,1,293,-19,223953122,223953425 -6 + chr1 223994262 223994349 chr1,223994218,223994533,-,AluJb,SINE,Alu,-15,297,2,223994203,223994534 -1 - chr1 223994712 223994731 chr1,223994573,223994731,-,AluSc,SINE,Alu,-17,292,136,223994556,223994866 -2 - chr1 223994731 223994818 chr1,223994731,223994818,+,AluJr,SINE,Alu,210,296,-16,223994522,223994834 +6 + chr1 224208781 224209011 chr1,224208781,224209013,+,AluSg7,SINE,Alu,1,278,-31,224208781,224209044 -2 + chr1 224212937 224213119 chr1,224212937,224213119,-,HAL1,LINE,L1,-634,1873,1663,224212303,224214781 +6 - chr1 224227712 224228043 chr1,224227712,224228085,+,MLT1B,LTR,ERVL-MaLR,1,386,-4,224227712,224228089 +5 + chr1 224717741 224717810 chr1,224717741,224717829,-,MamSINE1,SINE,tRNA-RTE,-111,179,91,224717630,224717919 +2 - chr1 224718976 224719108 chr1,224718976,224719125,+,L2a,LINE,L2,3230,3426,0,224715747,224719125 -2 + chr1 224766900 224766939 chr1,224766831,224766939,-,MamTip2,DNA,hAT-Tip100,-81,224,98,224766750,224767036 -1 - chr1 224767025 224767153 chr1,224767025,224767193,+,MIRc,SINE,MIR,37,240,-28,224766989,224767221 +4 + chr1 225700876 225701106 chr1,225700876,225701240,-,MLT1L,LTR,ERVL-MaLR,-14,596,195,225700862,225701434 -4 - chr1 225710968 225711051 chr1,225710806,225711051,-,L2c,LINE,L2,0,3387,3133,225710806,225714183 +5 - chr1 225711107 225711217 chr1,225711107,225711217,+,MER5B,DNA,hAT-Charlie,5,123,-55,225711103,225711272 -6 + chr1 225735377 225735495 chr1,225735219,225735527,+,AluSz6,SINE,Alu,1,311,-1,225735219,225735528 -3 + chr1 225840916 225840989 chr1,225840916,225840989,-,L1ME3,LINE,L1,-2,6122,6043,225840914,225847031 +6 - chr1 225841125 225841187 chr1,225841125,225841279,-,L1ME3,LINE,L1,-167,5995,5838,225840958,225847116 +2 - chr1 226060712 226060722 chr1,226060608,226060722,+,L2a,LINE,L2,3305,3420,-6,226057304,226060728 -5 + chr1 226086796 226086858 chr1,226086572,226086858,-,AluSx,SINE,Alu,-17,295,2,226086555,226086859 -2 - chr1 226086858 226087053 chr1,226086858,226087362,-,ERVL-E-int,LTR,ERVL,-2122,3545,2994,226084736,226090355 -4 - chr1 226089490 226089654 chr1,226089294,226089738,+,MLT1J,LTR,ERVL-MaLR,62,508,-4,226089233,226089742 +5 + chr1 226148046 226148068 chr1,226148046,226148382,+,L1MC3,LINE,L1,7444,7785,0,226140603,226148382 +4 + chr1 226668897 226669134 chr1,226667988,226669134,+,MER97d,DNA,hAT-Tip100,8,1171,-34,226667981,226669168 +1 + chr1 226669134 226669202 chr1,226669134,226669412,+,AluSq2,SINE,Alu,2,298,-15,226669133,226669427 +4 + chr1 227178333 227178434 chr1,227178145,227178493,+,THE1B,LTR,ERVL-MaLR,6,327,-37,227178140,227178530 +1 + chr1 227182867 227183176 chr1,227182648,227183176,+,MLT2B3,LTR,ERVL,3,544,-10,227182646,227183186 +2 + chr1 227183202 227183444 chr1,227183202,227184741,-,L1MD2,LINE,L1,-210,6149,4573,227182992,227189313 -5 - chr1 227393591 227393704 chr1,227393423,227393801,+,MLT1C,LTR,ERVL-MaLR,1,366,-101,227393423,227393902 +1 + chr1 227395523 227395555 chr1,227395523,227395555,-,L3,LINE,CR1,-1,4098,4067,227395522,227399621 -6 - chr1 227409755 227409884 chr1,227409371,227409894,-,Ricksha_c,DNA,MULE-MuDR,-1140,908,391,227408231,227410284 -1 - chr1 227430264 227430419 chr1,227430264,227430419,+,MER5A,DNA,hAT-Charlie,1,189,0,227430264,227430419 +6 + chr1 227743946 227744121 chr1,227743946,227744259,-,MER2,DNA,TcMar-Tigger,0,345,1,227743946,227744259 +2 - chr1 227745775 227745903 chr1,227745661,227745903,-,LTR40a,LTR,ERVL,-205,314,69,227745456,227745971 +4 - chr1 227746844 227746986 chr1,227746844,227746986,+,MIR3,SINE,MIR,46,192,-16,227746799,227747002 -6 + chr1 228074471 228074628 chr1,228074471,228074628,+,L1M3,LINE,L1,5339,5497,-686,228069133,228075314 -6 + chr1 228074630 228074920 chr1,228074630,228074920,+,AluJr,SINE,Alu,3,290,-22,228074628,228074942 -6 + chr1 228074932 228074982 chr1,228074932,228074982,+,L1MB3,LINE,L1,6125,6176,-7,228068808,228074989 -6 + chr1 228075822 228076202 chr1,228075822,228076202,-,MLT1C,LTR,ERVL-MaLR,-14,453,60,228075808,228076261 +6 - chr1 228076269 228076403 chr1,228076269,228076403,+,MLT1F,LTR,ERVL-MaLR,391,526,-22,228075879,228076425 -6 + chr1 228121523 228121606 chr1,228121183,228121606,-,MER57A1,LTR,ERV1,0,432,1,228121183,228121606 -1 - chr1 228121613 228121710 chr1,228121613,228121710,+,MER65D,LTR,ERV1,377,473,0,228121237,228121710 +6 + chr1 228121857 228122536 chr1,228121857,228122536,-,MER21B,LTR,ERVL,-8,930,39,228121849,228122574 -6 - chr1 228122538 228123076 chr1,228122538,228123076,-,LTR48B,LTR,ERV1,-23,621,5,228122515,228123080 -6 - chr1 228123653 228123771 chr1,228123653,228123838,+,LTR38A1,LTR,ERV1,363,543,0,228123291,228123838 +5 + chr1 228164086 228164148 chr1,228163691,228164148,+,MER31A,LTR,ERV1,1,485,0,228163691,228164148 -5 + chr1 228270556 228271518 chr1,228270556,228271518,+,L1M5,LINE,L1,3468,4511,-1635,228267089,228273153 -6 + chr1 228272752 228272797 chr1,228272752,228272797,+,(GCTCTGT)n,Simple_repeat,Simple_repeat,1,48,0,228272752,228272797 -6 + chr1 228275624 228275680 chr1,228275624,228275680,+,G-rich,Low_complexity,Low_complexity,1,56,0,228275624,228275680 -6 + chr1 228295911 228296064 chr1,228295805,228296158,-,MLT1B-int,LTR,ERVL-MaLR,0,1735,1367,228295805,228297524 +5 - chr1 228302389 228302685 chr1,228302310,228302685,-,MLT1B,LTR,ERVL-MaLR,0,390,1,228302310,228302685 +4 - chr1 228384114 228384459 chr1,228384006,228384470,+,L1M5,LINE,L1,2461,2921,-3225,228381546,228387695 -5 + chr1 228384789 228384806 chr1,228384789,228384806,+,L1M5,LINE,L1,2922,2933,-3213,228381868,228388019 -4 + chr1 228395711 228395806 chr1,228395517,228395826,-,AluJr,SINE,Alu,-14,298,1,228395503,228395826 -3 - chr1 228396743 228396806 chr1,228395989,228396806,+,MER21C,LTR,ERVL,10,914,-24,228395980,228396830 +2 + chr1 228486229 228486535 chr1,228486229,228486535,+,AluSg,SINE,Alu,1,305,-5,228486229,228486540 -6 + chr1 229093226 229093288 chr1,229093226,229093332,+,MLT1N2,LTR,ERVL-MaLR,413,520,-42,229092814,229093374 -2 + chr1 229223461 229223612 chr1,229223455,229223612,-,MIRb,SINE,MIR,-46,222,45,229223409,229223656 +5 - chr1 229227275 229227423 chr1,229227275,229227423,-,MIRb,SINE,MIR,-42,226,79,229227233,229227501 +6 - chr1 229259059 229259120 chr1,229259059,229259178,-,L2a,LINE,L2,0,3426,3307,229259059,229262484 +2 - chr1 229269366 229269382 chr1,229269258,229269382,-,LTR104_Mam,LTR,Gypsy,-1328,181,55,229267930,229269436 +5 - chr1 229319403 229319697 chr1,229318859,229319697,-,L1MEf,LINE,L1,-5069,1571,651,229313790,229320347 -1 - chr1 229319823 229319896 chr1,229319823,229320231,-,L1MEf,LINE,L1,-6093,454,24,229313730,229320254 -4 - chr1 229510218 229510240 chr1,229510218,229510598,-,L2a,LINE,L2,-2,3424,3003,229510216,229513600 -4 - chr1 229513978 229514272 chr1,229513872,229514337,+,MER39,LTR,ERV1,8,707,0,229513865,229514337 +5 + chr1 229885542 229885613 chr1,229885542,229885613,+,MIRb,SINE,MIR,163,228,-40,229885380,229885653 -6 + chr1 229885675 229885752 chr1,229885675,229885856,+,LTR16C,LTR,ERVL,1,176,-313,229885675,229886169 -1 + chr1 230259042 230259087 chr1,230259042,230259143,+,MIR3,SINE,MIR,81,183,-25,230258962,230259168 -2 + chr1 230259478 230259763 chr1,230259424,230260096,-,LTR8A,LTR,ERV1,0,727,2,230259424,230260097 +3 - chr1 230268303 230268327 chr1,230268237,230268327,+,MamRep434,DNA,TcMar-Tigger,12,102,-324,230268226,230268651 -4 + chr1 230592660 230592840 chr1,230592614,230593062,-,MLT2B1,LTR,ERVL,0,520,4,230592614,230593065 +5 - chr1 230595507 230595583 chr1,230595507,230595784,+,L2c,LINE,L2,3102,3387,0,230592406,230595784 -1 + chr1 230776081 230776402 chr1,230776034,230776402,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,230776034,230776402 +5 - chr1 230776402 230776547 chr1,230776402,230776547,-,MLT1J2-int,LTR,ERVL-MaLR,-1227,160,4,230775175,230776550 +6 - chr1 230776550 230776748 chr1,230776550,230776774,-,MLT1J2,LTR,ERVL-MaLR,-8,440,207,230776542,230776980 +2 - chr1 230823866 230823907 chr1,230823866,230824021,-,Charlie4z,DNA,hAT-Charlie,-1,166,11,230823865,230824031 +2 - chr1 230874846 230874879 chr1,230874756,230874879,-,FLAM_C,SINE,Alu,-12,131,1,230874744,230874879 -1 - chr1 230874879 230874949 chr1,230874879,230874949,-,MER5A,DNA,hAT-Charlie,-118,71,8,230874761,230874956 -6 - chr1 230874955 230875027 chr1,230874955,230875027,-,LTR16E1,LTR,ERVL,-239,299,230,230874716,230875256 -6 - chr1 230878957 230879014 chr1,230878957,230879014,+,AmnSINE2,SINE,tRNA-Deu,252,308,-50,230878706,230879064 +6 + chr1 231184098 231184545 chr1,231184072,231184545,-,MER101,LTR,ERV1,0,474,11,231184072,231184555 +5 - chr1 231184770 231184951 chr1,231184770,231184951,-,MIRb,SINE,MIR,-35,233,27,231184735,231184977 +6 - chr1 231522388 231522413 chr1,231522007,231522413,-,L2a,LINE,L2,-271,3155,2737,231521736,231525149 +5 - chr1 231522413 231522637 chr1,231522413,231522862,-,MLT1H2,LTR,ERVL-MaLR,0,549,81,231522413,231522942 +5 - chr1 231524426 231524547 chr1,231524260,231524592,+,AluSx3,SINE,Alu,1,311,0,231524260,231524592 -3 + chr1 231925834 231925950 chr1,231925551,231926017,+,MLT1C,LTR,ERVL-MaLR,1,464,-3,231925551,231926020 +1 + chr1 231943749 231943959 chr1,231943724,231944023,-,AluSx,SINE,Alu,-13,299,1,231943711,231944023 -3 - chr1 231944923 231945233 chr1,231944772,231948615,+,L1PA7,LINE,L1,2318,6154,0,231942455,231948615 +5 + chr1 232160091 232160223 chr1,232159960,232160304,+,THE1B,LTR,ERVL-MaLR,1,362,-2,232159960,232160306 +1 + chr1 232175146 232175361 chr1,232175146,232175361,-,CR1-12_AMi,LINE,CR1,-300,314,101,232174846,232175461 +6 - chr1 232178797 232178862 chr1,232178680,232178862,-,MIRb,SINE,MIR,-26,242,33,232178654,232178894 +4 - chr1 232179213 232179354 chr1,232179213,232179354,+,A-rich,Low_complexity,Low_complexity,1,144,0,232179213,232179354 -6 + chr1 232180056 232180113 chr1,232180056,232180433,+,LTR78B,LTR,ERV1,286,704,-592,232179771,232181025 -1 + chr1 232185099 232185179 chr1,232184908,232185179,-,UCON28b,Unknown,Unknown,-62,513,240,232184846,232185418 -2 - chr1 232718071 232718092 chr1,232717768,232718330,-,LTR10C,LTR,ERV1,0,591,1,232717768,232718330 -1 - chr1 232718670 232718777 chr1,232718652,232718777,+,L2b,LINE,L2,3073,3198,-189,232715580,232718966 +2 + chr1 232727543 232727809 chr1,232727543,232727809,-,AluSp,SINE,Alu,-16,297,1,232727527,232727809 +6 - chr1 232728620 232728689 chr1,232728620,232728706,+,Charlie24,DNA,hAT-Charlie,2363,2445,-5,232726258,232728711 -2 + chr1 232730575 232730707 chr1,232730290,232730707,+,L2,LINE,L2,2620,3030,-389,232727671,232731096 -4 + chr1 232742367 232742439 chr1,232742284,232742439,+,L2c,LINE,L2,1979,2127,-1292,232740306,232743731 -4 + chr1 234212606 234212698 chr1,234212456,234212698,+,MIR,SINE,MIR,3,262,0,234212454,234212698 -5 + chr1 234261706 234261753 chr1,234261130,234261753,-,MER41B,LTR,ERV1,0,634,1,234261130,234261753 -1 - chr1 234268583 234268650 chr1,234268511,234268650,+,L1M5,LINE,L1,5614,5766,-476,234262898,234269126 -5 + chr1 234268752 234268823 chr1,234268752,234268946,+,L1ME3E,LINE,L1,5787,5980,-262,234262966,234269208 -2 + chr1 234357006 234357025 chr1,234356981,234357025,+,(GCC)n,Simple_repeat,Simple_repeat,1,44,0,234356981,234357025 +1 + chr1 234372186 234372373 chr1,234371733,234372373,-,L1ME3B,LINE,L1,-2977,3169,2439,234368756,234374811 -1 - chr1 234373075 234373210 chr1,234373075,234373237,+,AluJr,SINE,Alu,145,302,-10,234372931,234373247 -2 + chr1 234528644 234528734 chr1,234528644,234528734,-,MIRc,SINE,MIR,-45,223,128,234528599,234528861 +6 - chr1 234529067 234529636 chr1,234529067,234529636,+,MLT1E1,LTR,ERVL-MaLR,3,640,-14,234529065,234529650 -6 + chr1 234529690 234529707 chr1,234529690,234529707,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,234529690,234529707 -6 + chr1 234530109 234530173 chr1,234530109,234530173,+,MIR,SINE,MIR,206,258,-4,234529904,234530177 -6 + chr1 234530229 234530342 chr1,234530229,234530535,+,AluJr,SINE,Alu,3,303,-9,234530227,234530544 -2 + chr1 234531016 234531158 chr1,234531002,234531158,+,MIR,SINE,MIR,96,262,0,234530907,234531158 -4 + chr1 234565407 234565422 chr1,234565407,234565499,+,MIRb,SINE,MIR,73,165,-103,234565335,234565602 +4 + chr1 234569824 234569994 chr1,234569790,234569994,-,MIRc,SINE,MIR,-2,266,51,234569788,234570044 -2 - chr1 234607053 234607080 chr1,234607053,234607080,+,(AT)n,Simple_repeat,Simple_repeat,1,27,0,234607053,234607080 +6 + chr1 234609454 234609483 chr1,234609454,234609492,+,(GCC)n,Simple_repeat,Simple_repeat,1,39,0,234609454,234609492 +5 + chr1 234629391 234629747 chr1,234629391,234629833,+,MLT1J2,LTR,ERVL-MaLR,2,607,-3,234629390,234629836 +4 + chr1 234634049 234634497 chr1,234634049,234634497,+,MLT1C,LTR,ERVL-MaLR,1,467,0,234634049,234634497 +6 + chr1 234634656 234634750 chr1,234634656,234634750,+,L2c,LINE,L2,3278,3371,-16,234631379,234634766 +6 + chr1 234646289 234646505 chr1,234646229,234646644,+,Tigger11a,DNA,TcMar-Tigger,293,708,-27,234645937,234646671 +1 + chr1 234660134 234660648 chr1,234659950,234660648,+,MER50B,LTR,ERV1,1,696,-1,234659950,234660649 +1 + chr1 234664842 234664903 chr1,234664550,234665072,+,MER1A,DNA,hAT-Charlie,1,529,0,234664550,234665072 +3 + chr1 234666747 234667104 chr1,234666747,234667143,+,MLT1B,LTR,ERVL-MaLR,1,386,-4,234666747,234667147 +5 + chr1 234670537 234670722 chr1,234670537,234670722,-,MIR,SINE,MIR,-6,256,44,234670531,234670765 +6 - chr1 234670762 234670892 chr1,234670762,234670892,+,MIR,SINE,MIR,96,237,-31,234670667,234670923 -6 + chr1 234680811 234681122 chr1,234680760,234681442,-,L2a,LINE,L2,-216,3210,2540,234680544,234683981 -5 - chr1 234682692 234683082 chr1,234682540,234683082,+,L1ME4c,LINE,L1,5494,6078,-46,234677047,234683128 +2 + chr1 234696058 234696153 chr1,234695976,234696342,-,THE1D,LTR,ERVL-MaLR,-1,380,1,234695975,234696342 +1 - chr1 234728483 234728565 chr1,234728483,234728565,-,MIR3,SINE,MIR,-122,108,27,234728361,234728591 -6 - chr1 234729029 234729083 chr1,234729029,234729083,+,MIR1_Amn,SINE,MIR,87,140,-90,234728943,234729173 +6 + chr1 234729409 234729461 chr1,234729409,234729461,+,L2c,LINE,L2,3288,3343,-44,234726122,234729505 +6 + chr1 234731131 234731155 chr1,234731131,234731155,+,(CAA)n,Simple_repeat,Simple_repeat,1,25,0,234731131,234731155 +6 + chr1 234731520 234731634 chr1,234731520,234731634,+,UCON79,DNA?,DNA?,3,114,-57,234731518,234731691 +6 + chr1 234957231 234957271 chr1,234957179,234957271,+,UCON1,Unknown,Unknown,580,673,-713,234956600,234957984 +1 + chr1 234961434 234961474 chr1,234961434,234961474,+,(TCTTT)n,Simple_repeat,Simple_repeat,1,42,0,234961434,234961474 -6 + chr1 234968388 234968490 chr1,234968354,234968508,+,AluSx1,SINE,Alu,147,297,-15,234968208,234968523 -3 + chr1 234980656 234980804 chr1,234980615,234980877,-,AmnSINE1,SINE,5S-Deu-L2,-195,380,112,234980420,234980988 +1 - chr1 235839483 235839512 chr1,235839458,235839512,-,L3,LINE,CR1,-1894,2205,2154,235837564,235841665 -1 - chr1 235839512 235839556 chr1,235839512,235839806,+,AluSx,SINE,Alu,2,284,-28,235839511,235839834 +4 + chr1 235839736 235839806 chr1,235839512,235839806,+,AluSx,SINE,Alu,2,284,-28,235839511,235839834 +2 + chr1 235839806 235839869 chr1,235839806,235839869,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,65,0,235839806,235839869 +6 + chr1 235839869 235840028 chr1,235839869,235840028,-,L3,LINE,CR1,-1946,2153,1966,235837923,235841993 -6 - chr1 235840095 235840182 chr1,235840095,235840332,-,L2c,LINE,L2,-18,3369,3049,235840077,235843380 -5 - chr1 235943567 235943682 chr1,235943212,235943682,+,MLT1B,LTR,ERVL-MaLR,1,467,0,235943212,235943682 -4 + chr1 235943682 235943783 chr1,235943682,235943783,+,(CA)n,Simple_repeat,Simple_repeat,1,101,0,235943682,235943783 -6 + chr1 235957924 235958003 chr1,235957924,235958627,-,MER50,LTR,ERV1,-23,711,1,235957901,235958627 +2 - chr1 236550186 236550235 chr1,236550186,236550235,+,Tigger19a,DNA,TcMar-Tigger,59,109,-214,236550128,236550449 -6 + chr1 237862175 237862205 chr1,237862070,237862350,-,MLT1K,LTR,ERVL-MaLR,-10,585,330,237862060,237862679 -1 - chr1 237867082 237867175 chr1,237867082,237867245,-,L2c,LINE,L2,0,3387,3216,237867082,237870460 -4 - chr1 237904008 237904059 chr1,237904008,237904059,+,MIR1_Amn,SINE,MIR,20,75,-155,237903989,237904214 +6 + chr1 237905427 237905601 chr1,237905405,237906195,+,MamGypLTR3,LTR,Gypsy,1,840,-54,237905405,237906249 +3 + chr1 237905937 237906110 chr1,237905405,237906195,+,MamGypLTR3,LTR,Gypsy,1,840,-54,237905405,237906249 +3 + chr1 237916233 237916282 chr1,237915274,237916282,+,LTR13,LTR,ERVK,1,1007,0,237915274,237916282 +2 + chr1 237916282 237916396 chr1,237916282,237917108,+,HERVK13-int,LTR,ERVK,1,828,-7288,237916282,237924396 +4 + chr1 237920972 237921058 chr1,237920972,237921169,+,MIRb,SINE,MIR,7,226,-42,237920966,237921211 +4 + chr1 238276063 238276116 chr1,238276063,238276116,+,MIR3,SINE,MIR,43,92,-116,238276021,238276232 +6 + chr1 238276116 238276159 chr1,238276116,238276672,-,LTR7B,LTR,ERV1,0,464,1,238276116,238276672 -4 - chr1 238480591 238481123 chr1,238480591,238481123,+,L1ME3C,LINE,L1,5316,5934,-189,238475276,238481312 -6 + chr1 238481159 238481484 chr1,238481159,238481484,-,MER61A,LTR,ERV1,0,341,1,238481159,238481484 +6 - chr1 238481484 238481681 chr1,238481484,238485117,-,MER61-int,LTR,ERV1,0,5217,1655,238481484,238486771 +2 - chr1 238485785 238485817 chr1,238485151,238485817,-,MER61-int,LTR,ERV1,-4440,777,1,238480711,238485817 +1 - chr1 238485445 238485573 chr1,238485151,238485817,-,MER61-int,LTR,ERV1,-4440,777,1,238480711,238485817 -1 - chr1 238485817 238486023 chr1,238485817,238486145,-,MER61A,LTR,ERV1,0,341,2,238485817,238486146 +1 - chr1 238489102 238489188 chr1,238489078,238489209,-,FLAM_C,SINE,Alu,-10,133,2,238489068,238489210 -3 - chr1 238535741 238536028 chr1,238535741,238536028,+,AluSx4,SINE,Alu,6,305,-5,238535736,238536033 +6 + chr1 238537309 238537419 chr1,238537309,238537419,-,MIRb,SINE,MIR,-130,138,22,238537179,238537440 -6 - chr1 239247808 239248100 chr1,239247774,239248100,+,ORSL-2b,DNA,hAT-Tip100,113,456,-52,239247662,239248152 -5 + chr1 239248477 239248802 chr1,239248477,239248802,-,AluSz,SINE,Alu,0,312,1,239248477,239248802 +6 - chr1 239249370 239249456 chr1,239249370,239249456,-,L2c,LINE,L2,-30,3396,3288,239249340,239252743 +6 - chr1 239249551 239249876 chr1,239249551,239249876,-,AluY,SINE,Alu,-4,307,1,239249547,239249876 +6 - chr1 239250319 239250358 chr1,239250319,239250358,+,(TG)n,Simple_repeat,Simple_repeat,1,39,0,239250319,239250358 -6 + chr1 239250500 239250818 chr1,239250500,239251008,+,MLT1H1,LTR,ERVL-MaLR,8,573,-6,239250493,239251014 -1 + chr1 239703746 239703907 chr1,239703746,239703907,-,L2c,LINE,L2,-24,3363,3188,239703722,239707094 +5 - chr1 239704261 239704316 chr1,239704261,239704316,+,OldhAT1,DNA,hAT-Ac,692,749,-2099,239703570,239706415 -6 + chr1 239704919 239705231 chr1,239704919,239705231,+,AluJr4,SINE,Alu,3,307,-5,239704917,239705236 -6 + chr1 239705356 239705691 chr1,239705356,239705691,-,MLT1C,LTR,ERVL-MaLR,0,467,85,239705356,239705775 +6 - chr1 239706994 239707192 chr1,239706994,239707192,+,MIRb,SINE,MIR,4,211,-57,239706991,239707249 -5 + chr1 239707337 239707425 chr1,239707337,239707425,+,OldhAT1,DNA,hAT-Ac,2597,2685,-163,239704741,239707588 -5 + chr1 239714177 239714264 chr1,239714151,239714790,-,L2b,LINE,L2,0,3375,2728,239714151,239717517 +3 - chr1 239730401 239730465 chr1,239730338,239730702,-,L2c,LINE,L2,-69,3318,2943,239730269,239733644 +1 - chr1 240400801 240400840 chr1,240400801,240400840,+,(CACATA)n,Simple_repeat,Simple_repeat,1,39,0,240400801,240400840 -6 + chr1 240400840 240400862 chr1,240400840,240401140,+,AluSx,SINE,Alu,1,298,-14,240400840,240401154 -1 + chr1 240401000 240401123 chr1,240400840,240401140,+,AluSx,SINE,Alu,1,298,-14,240400840,240401154 -1 + chr1 240588531 240588700 chr1,240588531,240588700,-,MIRc,SINE,MIR,-94,174,10,240588437,240588709 +6 - chr1 240588829 240589122 chr1,240588829,240589122,+,AluJb,SINE,Alu,1,282,-30,240588829,240589152 -6 + chr1 240589153 240589175 chr1,240589153,240589464,+,AluSp,SINE,Alu,1,312,-1,240589153,240589465 -2 + chr1 240590728 240590748 chr1,240590728,240590773,+,L2b,LINE,L2,3047,3090,-285,240587682,240591058 -1 + chr1 240768327 240768411 chr1,240768327,240768411,-,MIRb,SINE,MIR,-30,238,148,240768297,240768558 -6 - chr1 241424634 241424714 chr1,241424634,241424984,+,MER52D,LTR,ERV1,470,884,-1239,241424165,241426223 +4 + chr1 241433172 241433492 chr1,241433041,241433568,+,MER34,LTR,ERV1,1,542,0,241433041,241433568 +5 + chr1 242147514 242147554 chr1,242147016,242149664,-,L1ME1,LINE,L1,-17,6957,4235,242146999,242153898 -1 - chr1 242192155 242192176 chr1,242192055,242192176,+,L2,LINE,L2,2332,2452,-967,242189724,242193143 +2 + chr1 242203555 242203743 chr1,242203418,242203822,+,MSTB,LTR,ERVL-MaLR,1,426,0,242203418,242203822 +1 + chr1 242210369 242210827 chr1,242210317,242210868,+,LTR7,LTR,ERV1,1,448,-2,242210317,242210870 +5 + chr1 243005889 243005997 chr1,243005889,243005997,+,L2c,LINE,L2,3286,3386,-1,243002604,243005998 -6 + chr1 243006663 243006678 chr1,243006663,243006809,-,MIRb,SINE,MIR,-80,188,50,243006583,243006858 +2 - chr1 243029639 243029916 chr1,243029639,243029953,+,AluSq2,SINE,Alu,1,313,0,243029639,243029953 -2 + chr1 243088035 243088136 chr1,243087805,243088136,+,AluSq2,SINE,Alu,1,299,-14,243087805,243088150 -5 + chr1 243092041 243092194 chr1,243091915,243092216,+,AluYh3,SINE,Alu,2,300,-11,243091914,243092227 -3 + chr1 243092479 243092688 chr1,243092344,243092773,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,243092344,243092775 -1 + chr1 243096094 243096122 chr1,243096094,243096130,+,L2c,LINE,L2,3268,3303,-84,243092827,243096214 -2 + chr1 243101386 243101554 chr1,243101357,243101554,-,FRAM,SINE,Alu,-6,296,36,243101351,243101589 +4 - chr1 243546708 243546967 chr1,243546708,243547471,-,MER63C,DNA,hAT-Blackjack,-68,862,1,243546640,243547471 -4 - chr1 243548067 243548329 chr1,243548067,243548331,+,MamTip1,DNA,hAT-Tip100,1,263,-4,243548067,243548335 +5 + chr1 243739523 243739576 chr1,243739389,243739576,-,Charlie5,DNA,hAT-Charlie,-2424,200,2,243736965,243739577 +4 - chr1 243793253 243793406 chr1,243793253,243793406,-,FLAM_C,SINE,Alu,-81,221,7,243793172,243793412 +6 - chr1 243793491 243793580 chr1,243793491,243793791,+,AluJr,SINE,Alu,2,297,-15,243793490,243793806 -2 + chr1 243794260 243794334 chr1,243794032,243794334,-,AluJb,SINE,Alu,-16,296,2,243794016,243794335 +4 - chr1 244005058 244005158 chr1,244004980,244005869,+,ERV3-16A3_I-int,LTR,ERVL,1229,2067,-3159,244003752,244009028 +3 + chr1 244010021 244010056 chr1,244009551,244010056,+,ERV3-16A3_I-int,LTR,ERVL,4678,5166,-60,244004874,244010116 +2 + chr1 244010829 244010890 chr1,244010829,244010890,+,A-rich,Low_complexity,Low_complexity,1,65,0,244010829,244010890 +6 + chr1 244041428 244041555 chr1,244041428,244041562,-,L2a,LINE,L2,-18,3408,3268,244041410,244044829 -4 - chr1 244064813 244064849 chr1,244064813,244064849,+,(CAATG)n,Simple_repeat,Simple_repeat,1,38,0,244064813,244064849 +6 + chr1 244065176 244065208 chr1,244065176,244065208,+,(AAC)n,Simple_repeat,Simple_repeat,1,32,0,244065176,244065208 +6 + chr1 244066147 244066190 chr1,244066147,244066190,+,(T)n,Simple_repeat,Simple_repeat,1,43,0,244066147,244066190 +6 + chr1 244067783 244067909 chr1,244067783,244067929,+,MIR3,SINE,MIR,23,183,-25,244067761,244067954 +5 + chr1 244073831 244073969 chr1,244073784,244073969,-,MLT1C,LTR,ERVL-MaLR,-281,186,10,244073503,244073978 +4 - chr1 244375210 244375301 chr1,244375210,244375301,-,MER21C,LTR,ERVL,-849,89,9,244374361,244375309 +6 - chr1 244842569 244842704 chr1,244842569,244842704,+,L1ME2,LINE,L1,5825,5970,-194,244836745,244842898 -6 + chr1 244844476 244844779 chr1,244844476,244844779,+,AluSx,SINE,Alu,2,297,-15,244844475,244844794 -6 + chr1 244844922 244845181 chr1,244844922,244845181,-,MER2,DNA,TcMar-Tigger,-57,288,3,244844865,244845183 +6 - chr1 244969865 244969917 chr1,244969865,244969917,+,G-rich,Low_complexity,Low_complexity,1,56,0,244969865,244969917 -6 + chr1 245214161 245214206 chr1,245214161,245214380,+,AluJr,SINE,Alu,71,288,-24,245214091,245214404 -2 + chr1 245226017 245226080 chr1,245225998,245226080,-,MIRb,SINE,MIR,-14,254,173,245225984,245226252 +4 - chr1 246025897 246026055 chr1,246025849,246026178,+,AluSx1,SINE,Alu,1,306,-6,246025849,246026184 +1 + chr1 246034624 246034634 chr1,246034624,246034685,+,(AGAGGTG)n,Simple_repeat,Simple_repeat,1,63,0,246034624,246034685 +4 + chr1 246108626 246108717 chr1,246108584,246108740,+,L2c,LINE,L2,2747,2902,-517,246105838,246109257 +1 + chr1 246113689 246113791 chr1,246113626,246113791,+,L2b,LINE,L2,3197,3408,-18,246110430,246113809 +2 + chr1 246321759 246321868 chr1,246321759,246322056,-,AluJo,SINE,Alu,-23,289,1,246321736,246322056 +2 - chr1 246322284 246322384 chr1,246322084,246322384,+,AluSz6,SINE,Alu,2,299,-13,246322083,246322397 -4 + chr1 246516039 246516110 chr1,246515483,246516110,-,LTR10E,LTR,ERV1,-5,628,1,246515478,246516110 +5 - chr1 246516110 246516310 chr1,246516110,246516310,-,L1ME1,LINE,L1,-666,5678,5480,246515444,246521789 +6 - chr1 246605873 246605993 chr1,246605408,246605993,-,MER48,LTR,ERV1,0,407,1,246605408,246605993 -1 - chr1 246605993 246606819 chr1,246605993,246606819,-,HERVH48-int,LTR,ERV1,0,6654,5794,246605993,246612612 -6 - chr1 246607611 246607818 chr1,246607462,246607818,-,MER48,LTR,ERV1,-23,384,1,246607439,246607818 -2 - chr1 246607818 246608101 chr1,246607818,246608101,+,AluSc,SINE,Alu,19,301,-8,246607800,246608109 +6 + chr1 246683322 246683415 chr1,246683322,246683415,+,L3,LINE,CR1,3418,3521,-578,246679905,246683993 +6 + chr1 246683765 246684081 chr1,246683765,246684081,+,LTR16A,LTR,ERVL,109,438,0,246683657,246684081 +6 + chr1 246684178 246684496 chr1,246684178,246684496,-,AluSz,SINE,Alu,-3,309,1,246684175,246684496 -6 - chr1 246684667 246685075 chr1,246684667,246685113,+,LTR7C,LTR,ERV1,1,471,0,246684667,246685113 +5 + chr1 246690047 246690161 chr1,246689887,246690161,+,LTR41,LTR,ERVL,438,768,0,246689450,246690161 +1 + chr1 246691655 246691691 chr1,246691655,246691691,+,(A)n,Simple_repeat,Simple_repeat,1,36,0,246691655,246691691 +6 + chr1 246772598 246772642 chr1,246772598,246772642,-,L1M,LINE,L1,-825,5354,5309,246771773,246777950 -6 - chr1 246772888 246773227 chr1,246772888,246773227,-,L1ME3B,LINE,L1,-176,6066,5696,246772712,246778922 -6 - chr1 246773258 246773405 chr1,246773258,246773405,-,MER105,DNA,hAT-Charlie,-5,198,48,246773253,246773452 -6 - chr1 246773405 246773590 chr1,246773405,246773590,-,MER5A,DNA,hAT-Charlie,0,189,1,246773405,246773590 -6 - chr1 246773590 246773623 chr1,246773590,246773623,-,MER105,DNA,hAT-Charlie,-156,47,18,246773434,246773640 -6 - chr1 246773643 246774160 chr1,246773643,246774160,-,L1ME3B,LINE,L1,-603,5639,5102,246773040,246779261 -6 - chr1 246774160 246774204 chr1,246774160,246774204,+,(GT)n,Simple_repeat,Simple_repeat,1,44,0,246774160,246774204 +6 + chr1 246774204 246774277 chr1,246774204,246774277,-,L1ME3B,LINE,L1,-1045,5101,5042,246773159,246779318 -6 - chr1 246774277 246774396 chr1,246774277,246774396,+,AluJr,SINE,Alu,1,118,-194,246774277,246774590 +6 + chr1 246774396 246775208 chr1,246774396,246775208,-,L1ME3B,LINE,L1,-1105,5041,4209,246773291,246779416 -6 - chr1 246775226 246775425 chr1,246775226,246775425,+,MIR,SINE,MIR,23,268,0,246775204,246775425 +6 + chr1 246775428 246775772 chr1,246775428,246775772,-,L1ME3B,LINE,L1,-1954,4192,3825,246773474,246779596 -5 - chr1 246790452 246790506 chr1,246790452,246790506,-,MIR3,SINE,MIR,-92,116,63,246790360,246790568 -6 - chr1 246792001 246792165 chr1,246792001,246792165,+,L3b,LINE,CR1,4906,5077,-155,246787096,246792320 +6 + chr1 247187281 247187390 chr1,247187089,247187390,+,L1MA7,LINE,L1,5963,6291,0,247181127,247187390 -5 + chr1 247187392 247187460 chr1,247187392,247187460,+,(TTTTTAA)n,Simple_repeat,Simple_repeat,1,71,0,247187392,247187460 -6 + chr1 247188028 247188455 chr1,247188028,247188455,+,L1M4,LINE,L1,3533,4019,-2127,247184496,247190582 -6 + chr1 247188455 247188526 chr1,247188455,247188694,+,AluJr,SINE,Alu,1,236,-76,247188455,247188770 -1 + chr1 247211527 247211558 chr1,247211258,247211558,-,MER33,DNA,hAT-Charlie,-14,310,1,247211244,247211558 +4 - chr1 247212175 247212392 chr1,247212130,247212594,-,MLT1H,LTR,ERVL-MaLR,0,549,9,247212130,247212602 +3 - chr1 247524813 247525084 chr1,247524813,247525084,+,L1ME3G,LINE,L1,5263,5509,-614,247519551,247525698 -6 + chr1 247525137 247525933 chr1,247525137,247525965,-,MER21B,LTR,ERVL,-5,863,5,247525132,247525969 +2 - chr1 247526426 247526528 chr1,247526426,247526528,-,LTR16E2,LTR,ERVL,-113,455,342,247526313,247526869 +6 - chr1 247565891 247565918 chr1,247565891,247565918,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,28,0,247565891,247565918 -5 + chr1 247663503 247663547 chr1,247662120,247663547,-,L1MA8,LINE,L1,-2501,5061,3624,247659619,247667170 -2 - chr1 247663562 247663843 chr1,247663562,247663869,+,AluY,SINE,Alu,3,305,-6,247663560,247663875 +5 + chr1 247713918 247713954 chr1,247713918,247714072,-,MER5A1,DNA,hAT-Charlie,0,166,1,247713918,247714072 +2 - chr1 247746548 247746752 chr1,247746548,247746752,+,MIR,SINE,MIR,23,242,-20,247746526,247746772 +6 + chr1 248484466 248484560 chr1,248484466,248484560,+,L2a,LINE,L2,3309,3413,-13,248481158,248484573 -6 + chr1 248484687 248484733 chr1,248484687,248484733,+,A-rich,Low_complexity,Low_complexity,1,47,0,248484687,248484733 -6 + chr1 248484781 248484895 chr1,248484781,248485002,+,MIRb,SINE,MIR,19,242,-26,248484763,248485028 -2 + chr1 248563081 248563289 chr1,248563081,248563289,-,MIRb,SINE,MIR,-26,242,37,248563055,248563325 -6 - chr1 248563353 248563396 chr1,248563353,248563396,+,(TTGATT)n,Simple_repeat,Simple_repeat,1,44,0,248563353,248563396 +6 + chr1 248563523 248563617 chr1,248563523,248563617,-,L2a,LINE,L2,-13,3413,3309,248563510,248566925 -6 - chr1 248692628 248692692 chr1,248692628,248692692,-,L2b,LINE,L2,-70,3317,3241,248692558,248695932 -6 - chr1 248692661 248692730 chr1,248692661,248692898,+,MIRb,SINE,MIR,17,268,0,248692645,248692898 +5 + chr1 248864642 248864796 chr1,248864642,248865021,+,L2a,LINE,L2,2362,2802,-617,248862281,248865638 +5 + chr10 437597 437697 chr10,437597,437697,-,L1MEc,LINE,L1,-6267,820,722,431330,438418 -6 - chr10 628823 628897 chr10,628823,628907,-,MER20,DNA,hAT-Charlie,-55,164,67,628768,628973 -4 - chr10 631200 631234 chr10,631200,631234,+,(TAATT)n,Simple_repeat,Simple_repeat,1,35,0,631200,631234 +6 + chr10 666358 666387 chr10,666358,666387,+,(TCCC)n,Simple_repeat,Simple_repeat,1,29,0,666358,666387 +6 + chr10 743992 744033 chr10,743617,744074,+,L1MA7,LINE,L1,55,526,-6021,743563,750095 +1 + chr10 744577 744850 chr10,744515,744850,+,L1MA7,LINE,L1,535,807,-5740,743981,750590 +2 + chr10 744855 744943 chr10,744855,744943,+,L1MA7,LINE,L1,1020,1107,-5533,743836,750476 +6 + chr10 744944 744958 chr10,744944,745133,+,AluSq2,SINE,Alu,1,191,-122,744944,745255 +5 + chr10 933098 933115 chr10,933098,933170,+,UCON105,Unknown,Unknown,147,216,-57,932952,933227 +4 + chr10 971564 971724 chr10,971564,971724,+,L1MEb,LINE,L1,7,169,-5901,971558,977625 -6 + chr10 971850 972027 chr10,971850,972027,+,MSTD,LTR,ERVL-MaLR,18,216,-180,971833,972207 -6 + chr10 972027 972327 chr10,972027,972327,-,AluSq,SINE,Alu,-16,297,1,972011,972327 +6 - chr10 972327 972485 chr10,972327,972485,+,MSTD,LTR,ERVL-MaLR,215,368,-28,972113,972513 -6 + chr10 985289 985336 chr10,985289,985336,+,(ATACATA)n,Simple_repeat,Simple_repeat,1,47,0,985289,985336 -6 + chr10 985349 985444 chr10,985349,985444,+,MIR,SINE,MIR,150,250,-12,985200,985456 -6 + chr10 985442 985490 chr10,985442,985490,-,MIRc,SINE,MIR,-133,135,88,985309,985577 +6 - chr10 985851 985907 chr10,985851,985907,-,L2c,LINE,L2,-40,3347,3291,985811,989197 +6 - chr10 986667 986964 chr10,986667,986964,+,AluSx1,SINE,Alu,11,307,-5,986657,986969 -6 + chr10 987222 987331 chr10,987222,987331,+,L3,LINE,CR1,3186,3305,-794,984037,988125 -6 + chr10 987417 987623 chr10,987417,987623,+,MIR,SINE,MIR,2,227,-35,987416,987658 -6 + chr10 1036789 1036893 chr10,1036495,1036911,+,MER70C,LTR,ERVL,92,527,-4,1036404,1036915 +1 + chr10 1160915 1160997 chr10,1160915,1161033,+,LTR16C,LTR,ERVL,367,489,0,1160549,1161033 +5 + chr10 1163659 1163678 chr10,1163659,1163678,+,(TG)n,Simple_repeat,Simple_repeat,1,19,0,1163659,1163678 +6 + chr10 1164076 1164233 chr10,1164076,1164233,+,MIRb,SINE,MIR,85,250,-18,1163992,1164251 +6 + chr10 1164428 1164554 chr10,1164428,1164554,-,L1MA6,LINE,L1,0,6300,6169,1164428,1170722 -6 - chr10 1361420 1361498 chr10,1361351,1361498,+,MamRep1879,DNA,hAT-Tip100?,54,203,-13,1361298,1361511 -4 + chr10 1526637 1526763 chr10,1526359,1526763,+,MSTB1,LTR,ERVL-MaLR,1,429,-3,1526359,1526766 +1 + chr10 1556890 1556984 chr10,1556890,1557615,+,L2,LINE,L2,754,1515,-1904,1556137,1559519 +5 + chr10 2006015 2006448 chr10,2006015,2006448,+,MLT1C,LTR,ERVL-MaLR,1,463,-4,2006015,2006452 -6 + chr10 2006456 2006886 chr10,2006456,2006886,+,MLT1C-int,LTR,ERVL-MaLR,5,558,-813,2006452,2007699 -6 + chr10 2006886 2007143 chr10,2006886,2007171,+,AluSc,SINE,Alu,1,303,-6,2006886,2007177 -2 + chr10 2012396 2012438 chr10,2012396,2012438,+,(TGGCCA)n,Simple_repeat,Simple_repeat,1,45,0,2012396,2012438 -6 + chr10 2014135 2014254 chr10,2013902,2014254,+,MLT1A0,LTR,ERVL-MaLR,1,362,-3,2013902,2014257 -4 + chr10 2071845 2071862 chr10,2071825,2071862,+,(TTTTTA)n,Simple_repeat,Simple_repeat,1,38,0,2071825,2071862 +1 + chr10 2080797 2081097 chr10,2080147,2081268,+,MLT1H-int,LTR,ERVL-MaLR,26,1167,-242,2080122,2081510 +5 + chr10 2167214 2167333 chr10,2167158,2167333,-,AluJb,SINE,Alu,-2,310,137,2167156,2167469 -2 - chr10 2167992 2168015 chr10,2167992,2168015,+,(AAG)n,Simple_repeat,Simple_repeat,1,23,0,2167992,2168015 +6 + chr10 2168667 2168810 chr10,2168667,2168810,-,MER5A,DNA,hAT-Charlie,-19,170,14,2168648,2168823 -6 - chr10 2189462 2189474 chr10,2189194,2189784,+,LTR10C,LTR,ERV1,1,591,0,2189194,2189784 -1 + chr10 2305379 2305570 chr10,2305379,2305570,+,(TG)n,Simple_repeat,Simple_repeat,1,189,0,2305379,2305570 -6 + chr10 2537493 2537505 chr10,2537419,2537505,+,L2b,LINE,L2,3244,3330,-45,2534176,2537550 +2 + chr10 2537529 2537625 chr10,2537529,2537677,-,LTR101_Mam,LTR,ERVL,-132,697,532,2537397,2538208 -5 - chr10 3011590 3011705 chr10,3011565,3011791,-,AluSx3,SINE,Alu,-9,302,71,3011556,3011861 -3 - chr10 3012987 3013111 chr10,3012987,3013367,+,MLT1J,LTR,ERVL-MaLR,1,354,-158,3012987,3013525 +5 + chr10 3065813 3065961 chr10,3065813,3065961,-,MER5A,DNA,hAT-Charlie,-5,184,7,3065808,3065967 +6 - chr10 3145359 3145568 chr10,3145359,3145568,+,MIRb,SINE,MIR,9,247,-21,3145351,3145589 +6 + chr10 3146293 3146515 chr10,3146293,3146515,-,MIRb,SINE,MIR,0,268,35,3146293,3146549 -6 - chr10 3146760 3146816 chr10,3146760,3146816,-,UCON71_Crp,Unknown,Unknown,-68,209,153,3146692,3146968 -6 - chr10 3167955 3167972 chr10,3167955,3168088,+,LTR86B1,LTR,ERVL,359,492,-1,3167597,3168089 +5 + chr10 3223816 3223850 chr10,3223761,3223853,-,L1M6,LINE,L1,-5587,909,815,3218174,3224667 -1 - chr10 3225630 3225728 chr10,3225630,3225802,+,L4_A_Mam,LINE,RTE-X,4635,4816,-174,3220996,3225976 +4 + chr10 3240371 3240418 chr10,3240286,3240418,-,MIRb,SINE,MIR,-115,153,16,3240171,3240433 +5 - chr10 3256460 3256557 chr10,3256300,3256610,+,AluJb,SINE,Alu,1,307,-5,3256300,3256615 -3 + chr10 3266003 3266107 chr10,3265968,3266281,-,AluJo,SINE,Alu,-20,292,1,3265948,3266281 -1 - chr10 3266658 3266746 chr10,3266638,3266746,-,AluJo,SINE,Alu,-180,132,6,3266458,3266751 -2 - chr10 3266776 3267015 chr10,3266776,3267106,-,HAL1ME,LINE,L1,-139,2326,1983,3266637,3269088 -5 - chr10 3497653 3497724 chr10,3496956,3499522,+,L1ME3,LINE,L1,3343,5989,-173,3493614,3499695 -3 + chr10 3499184 3499234 chr10,3496956,3499522,+,L1ME3,LINE,L1,3343,5989,-173,3493614,3499695 -3 + chr10 3535177 3535227 chr10,3535177,3535227,+,(GTGCCGT)n,Simple_repeat,Simple_repeat,1,51,0,3535177,3535227 -6 + chr10 3535231 3535404 chr10,3535231,3535433,+,Charlie17a,DNA,hAT-Charlie,15,214,-3,3535217,3535436 -2 + chr10 3536779 3536819 chr10,3536665,3536819,-,MIR,SINE,MIR,-45,217,39,3536620,3536857 +4 - chr10 3752505 3752622 chr10,3752484,3752760,-,AluSz,SINE,Alu,-17,295,1,3752467,3752760 -3 - chr10 3759221 3759294 chr10,3759221,3759417,-,MIR,SINE,MIR,0,268,40,3759221,3759456 -4 - chr10 3833979 3834147 chr10,3833979,3834147,+,MIRb,SINE,MIR,47,214,-54,3833933,3834201 +6 + chr10 3934519 3934783 chr10,3934491,3934783,-,AluSz6,SINE,Alu,-9,303,2,3934482,3934784 -1 - chr10 4052061 4052137 chr10,4052061,4052137,-,MamGypLTR3a,LTR,Gypsy,-446,535,462,4051615,4052598 -6 - chr10 4085197 4085293 chr10,4084950,4085315,-,AluSx1,SINE,Alu,-15,297,1,4084935,4085315 -3 - chr10 4085606 4085620 chr10,4085362,4085620,-,MIRb,SINE,MIR,-10,258,1,4085352,4085620 -2 - chr10 4087359 4087622 chr10,4087327,4087622,-,AluSq,SINE,Alu,-3,310,23,4087324,4087644 -2 - chr10 4087624 4087871 chr10,4087624,4087871,+,Tigger5,DNA,TcMar-Tigger,2146,2406,0,4085479,4087871 +6 + chr10 4087879 4087954 chr10,4087879,4087954,+,(AGAT)n,Simple_repeat,Simple_repeat,1,76,0,4087879,4087954 +6 + chr10 4088011 4088374 chr10,4088011,4088374,-,MSTA,LTR,ERVL-MaLR,0,428,61,4088011,4088434 -6 - chr10 4088502 4088559 chr10,4088502,4088559,-,MSTB,LTR,ERVL-MaLR,-310,118,61,4088192,4088619 -6 - chr10 4088550 4088650 chr10,4088550,4088650,-,MSTB,LTR,ERVL-MaLR,-324,102,1,4088226,4088650 -6 - chr10 4201205 4201373 chr10,4201205,4201373,+,MIRb,SINE,MIR,45,230,-38,4201161,4201411 -6 + chr10 4202458 4202714 chr10,4202458,4202714,-,MER31B,LTR,ERV1,-222,244,1,4202236,4202714 +6 - chr10 4203606 4203743 chr10,4203606,4203743,-,MIRb,SINE,MIR,-42,226,77,4203564,4203819 +6 - chr10 4204052 4204347 chr10,4204052,4204347,+,AluSp,SINE,Alu,1,299,-14,4204052,4204361 -6 + chr10 4205462 4205629 chr10,4205462,4205629,-,MamTip2,DNA,hAT-Tip100,-93,212,56,4205369,4205684 +6 - chr10 4206207 4206423 chr10,4206207,4206423,+,L2a,LINE,L2,2525,2744,-675,4203683,4207098 -6 + chr10 4206568 4206861 chr10,4206568,4206861,+,L2a,LINE,L2,3026,3334,-92,4203543,4206953 -6 + chr10 4408782 4408837 chr10,4408782,4408837,+,MIR,SINE,MIR,57,119,-143,4408726,4408980 +6 + chr10 4409055 4409142 chr10,4409055,4409142,+,MER89,LTR,ERV1,1,86,-473,4409055,4409615 +6 + chr10 4409116 4409240 chr10,4409116,4409240,+,MER89,LTR,ERV1,197,330,-229,4408920,4409469 +6 + chr10 4409956 4409970 chr10,4409956,4409970,+,(TTTTTG)n,Simple_repeat,Simple_repeat,1,48,0,4409956,4409970 +6 + chr10 4409970 4410004 chr10,4409970,4410004,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,4409970,4410004 +6 + chr10 4410034 4410544 chr10,4410034,4410544,+,MLT2A2,LTR,ERVL,3,453,0,4410032,4410544 +6 + chr10 4415305 4415407 chr10,4415288,4415407,-,AluJr,SINE,Alu,-193,119,2,4415095,4415408 +5 - chr10 4416396 4416477 chr10,4416396,4416486,-,LTR33B,LTR,ERVL,-314,189,92,4416082,4416577 +2 - chr10 4423581 4423691 chr10,4423581,4423779,+,MIR,SINE,MIR,54,262,0,4423528,4423779 -2 + chr10 4426071 4426179 chr10,4426071,4426478,+,MSTB,LTR,ERVL-MaLR,6,426,0,4426066,4426478 -1 + chr10 4650406 4650496 chr10,4650406,4650496,-,L2b,LINE,L2,-85,3290,3242,4650321,4653737 +6 - chr10 4651089 4651109 chr10,4651089,4651109,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,4651089,4651109 -5 + chr10 4655427 4655746 chr10,4655386,4655746,-,MSTD,LTR,ERVL-MaLR,-1,395,1,4655385,4655746 -1 - chr10 4657601 4657725 chr10,4657322,4658496,-,Tigger3b,DNA,TcMar-Tigger,-1,1230,1,4657321,4658496 +3 - chr10 4659453 4659503 chr10,4659207,4659503,-,AluSc,SINE,Alu,-10,299,1,4659197,4659503 +4 - chr10 4678128 4678154 chr10,4678128,4678205,-,MIR3,SINE,MIR,-68,140,66,4678060,4678270 +1 - chr10 4995580 4995659 chr10,4995580,4995659,+,MER5A,DNA,hAT-Charlie,7,89,-100,4995574,4995759 +6 + chr10 4996081 4996146 chr10,4996081,4996244,+,L1MC4,LINE,L1,6777,6956,-1086,4989305,4997330 +4 + chr10 4997322 4997380 chr10,4997322,4997645,+,L1MC4,LINE,L1,7689,8025,-17,4989634,4997662 +5 + chr10 5234497 5234593 chr10,5234497,5240880,+,L1PA7,LINE,L1,1,6453,-16,5234497,5240896 +4 + chr10 5263203 5263408 chr10,5263203,5263581,+,MER31B,LTR,ERV1,1,365,-120,5263203,5263701 +5 + chr10 5266196 5266264 chr10,5266196,5266264,-,L1ME4a,LINE,L1,-9,6115,6050,5266187,5272313 +6 - chr10 5266264 5266685 chr10,5266264,5266693,-,LTR3B,LTR,ERVK,-4,433,1,5266260,5266693 +2 - chr10 5516792 5516991 chr10,5516792,5516991,-,L2,LINE,L2,-668,2751,2500,5516124,5519490 +6 - chr10 5516991 5517134 chr10,5516991,5517134,+,AluSx3,SINE,Alu,164,306,-5,5516828,5517139 -6 + chr10 5517135 5517280 chr10,5517135,5517280,-,L2,LINE,L2,-913,2506,2346,5516222,5519625 +6 - chr10 5517439 5517512 chr10,5517439,5517534,+,MIRc,SINE,MIR,38,159,-109,5517402,5517643 -2 + chr10 5522412 5522648 chr10,5522412,5522648,-,L1ME4a,LINE,L1,-3,6121,5883,5522409,5528530 +6 - chr10 5524309 5524420 chr10,5524160,5524444,+,L2a,LINE,L2,3122,3426,0,5521039,5524444 -3 + chr10 5595395 5595574 chr10,5595395,5595574,+,MIR3,SINE,MIR,23,202,-6,5595373,5595580 -6 + chr10 5713915 5714056 chr10,5713915,5714056,+,FLAM_C,SINE,Alu,1,134,-9,5713915,5714065 -6 + chr10 5934364 5934677 chr10,5934364,5934677,-,AluSz,SINE,Alu,-3,309,1,5934361,5934677 +6 - chr10 5934710 5934968 chr10,5934710,5934968,-,AluJb,SINE,Alu,-9,303,14,5934701,5934981 +6 - chr10 5934997 5935153 chr10,5934997,5935153,+,MER112,DNA,hAT-Charlie,46,209,-52,5934952,5935205 -6 + chr10 5935185 5935300 chr10,5935185,5935300,+,L1ME3Cz,LINE,L1,392,518,-479,5934794,5935779 -6 + chr10 5935879 5936034 chr10,5935879,5936034,-,MIRb,SINE,MIR,-21,247,82,5935858,5936115 +6 - chr10 5943851 5943915 chr10,5943851,5944520,+,PABL_B,LTR,ERV1,1,665,-2,5943851,5944522 -2 + chr10 6036254 6036310 chr10,6036254,6036310,-,MIR3,SINE,MIR,-134,74,20,6036120,6036329 -6 - chr10 6197637 6197795 chr10,6197637,6197830,-,Tigger2a,DNA,TcMar-Tigger,-235,199,1,6197402,6197830 +2 - chr10 6277687 6277807 chr10,6277520,6277844,+,MSTA,LTR,ERVL-MaLR,111,428,0,6277410,6277844 +1 + chr10 6328143 6328167 chr10,6328143,6328167,+,(CCTTT)n,Simple_repeat,Simple_repeat,1,27,0,6328143,6328167 +6 + chr10 6329034 6329068 chr10,6329034,6329068,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,6329034,6329068 +6 + chr10 6329680 6329791 chr10,6329680,6329791,-,AluSz6,SINE,Alu,-194,118,7,6329486,6329797 -6 - chr10 6331004 6331016 chr10,6331004,6331050,+,MER20,DNA,hAT-Charlie,100,144,-75,6330905,6331125 +4 + chr10 6331501 6331603 chr10,6331304,6331673,+,MLT1A,LTR,ERVL-MaLR,1,374,0,6331304,6331673 +3 + chr10 6335257 6335531 chr10,6335232,6335531,-,AluSq4,SINE,Alu,-11,300,1,6335221,6335531 -2 - chr10 6335531 6335635 chr10,6335531,6335635,-,MIR,SINE,MIR,-110,152,48,6335421,6335682 -6 - chr10 6350846 6351320 chr10,6350846,6351320,+,L1MC5a,LINE,L1,1436,1911,-866,6349411,6352186 +6 + chr10 6351346 6351792 chr10,6351346,6351792,-,L2c,LINE,L2,-40,3347,2913,6351306,6354704 -6 - chr10 6352149 6352226 chr10,6352149,6352226,+,MER53,DNA,hAT,1,77,-116,6352149,6352342 +6 + chr10 6352387 6352400 chr10,6352387,6352400,-,L2a,LINE,L2,-13,3413,3406,6352374,6355805 -6 - chr10 6352400 6352455 chr10,6352400,6352455,+,(TCCA)n,Simple_repeat,Simple_repeat,1,55,0,6352400,6352455 +6 + chr10 6352455 6352562 chr10,6352455,6352562,-,L2a,LINE,L2,-21,3405,3291,6352434,6355852 -6 - chr10 6352612 6352762 chr10,6352612,6352946,+,L1ME4a,LINE,L1,5748,6119,-5,6346865,6352951 +5 + chr10 6586523 6586657 chr10,6586523,6586657,+,MamSINE1,SINE,tRNA-RTE,30,167,-123,6586494,6586780 +6 + chr10 6596846 6596894 chr10,6596793,6596948,-,MIRb,SINE,MIR,-75,193,30,6596718,6596977 -3 - chr10 6608348 6608408 chr10,6608332,6608687,-,L2c,LINE,L2,0,3387,3002,6608332,6611688 -1 - chr10 6613712 6613903 chr10,6613712,6614071,+,THE1B,LTR,ERVL-MaLR,1,364,0,6613712,6614071 +5 + chr10 6613934 6613987 chr10,6613712,6614071,+,THE1B,LTR,ERVL-MaLR,1,364,0,6613712,6614071 +5 + chr10 6615370 6615637 chr10,6615246,6616736,+,Charlie6,DNA,hAT-Charlie,83,1620,-1880,6615164,6618616 +5 + chr10 6615763 6615959 chr10,6615246,6616736,+,Charlie6,DNA,hAT-Charlie,83,1620,-1880,6615164,6618616 +5 + chr10 6616006 6616452 chr10,6615246,6616736,+,Charlie6,DNA,hAT-Charlie,83,1620,-1880,6615164,6618616 +5 + chr10 6618716 6618751 chr10,6618236,6618751,+,MER21A,LTR,ERVL,383,931,0,6617854,6618751 +1 + chr10 6618751 6618776 chr10,6618751,6618833,+,Charlie6,DNA,hAT-Charlie,2964,3046,-454,6615788,6619287 +4 + chr10 6620918 6621166 chr10,6620816,6621166,+,MER110A,LTR,ERV1,55,417,-51,6620762,6621217 +2 + chr10 6625317 6625346 chr10,6625305,6625445,-,AmnSINE2,SINE,tRNA-Deu,-16,342,195,6625289,6625639 -5 - chr10 6737382 6737628 chr10,6737297,6737688,+,MLT1H,LTR,ERVL-MaLR,23,575,-16,6737275,6737704 +1 + chr10 6779598 6779887 chr10,6779419,6779969,+,MLT2A2,LTR,ERVL,1,554,0,6779419,6779969 +1 + chr10 6841261 6841359 chr10,6841261,6841359,+,MIRc,SINE,MIR,20,124,-144,6841242,6841503 +6 + chr10 6841512 6841684 chr10,6841512,6841684,-,Tigger19a,DNA,TcMar-Tigger,-72,251,80,6841440,6841763 -6 - chr10 6842526 6842906 chr10,6842526,6842943,+,LTR19A,LTR,ERV1,1,486,0,6842526,6842943 +5 + chr10 6891516 6891603 chr10,6891516,6891765,-,MLT1B,LTR,ERVL-MaLR,-2,388,168,6891514,6891932 +2 - chr10 6891857 6891957 chr10,6891857,6892053,+,L1PBa1,LINE,L1,240,426,-6423,6891618,6898476 -2 + chr10 7097636 7097675 chr10,7097636,7097703,+,MIR3,SINE,MIR,118,184,-24,7097519,7097727 +5 + chr10 7413279 7413319 chr10,7413279,7413319,+,G-rich,Low_complexity,Low_complexity,1,41,0,7413279,7413319 +6 + chr10 7467415 7467526 chr10,7467415,7467604,+,MLT1D,LTR,ERVL-MaLR,311,485,-4,7467105,7467608 -2 + chr10 7469434 7469593 chr10,7469100,7470236,+,ERVL-E-int,LTR,ERVL,2195,3336,-2331,7466906,7472567 -3 + chr10 7533207 7533380 chr10,7533203,7533380,-,LTR67B,LTR,ERVL,-7,613,435,7533196,7533814 -1 - chr10 7534089 7534140 chr10,7534044,7534140,-,LTR67B,LTR,ERVL,-499,121,17,7533545,7534156 -2 - chr10 7536525 7536559 chr10,7536525,7536559,+,(GAAT)n,Simple_repeat,Simple_repeat,1,34,0,7536525,7536559 +6 + chr10 8051509 8051526 chr10,8051509,8051526,+,(GCG)n,Simple_repeat,Simple_repeat,1,17,0,8051509,8051526 -6 + chr10 8268277 8268305 chr10,8268277,8268439,+,L2a,LINE,L2,3229,3413,-13,8265049,8268452 -1 + chr10 8461106 8461175 chr10,8461106,8461436,+,AluSq2,SINE,Alu,2,313,0,8461105,8461436 +4 + chr10 8914487 8914596 chr10,8914328,8915026,-,L1MC4a,LINE,L1,-166,7716,6984,8914162,8922009 -5 - chr10 8970125 8970221 chr10,8969966,8970221,+,MLT1I,LTR,ERVL-MaLR,21,305,-106,8969946,8970327 +1 + chr10 8970230 8970272 chr10,8970230,8970612,-,L2,LINE,L2,-693,2726,2341,8969537,8972952 -4 - chr10 9758783 9758967 chr10,9758377,9758991,-,ERV3-16A3_I-int,LTR,ERVL,-3863,1363,725,9754514,9759715 +5 - chr10 9759079 9759237 chr10,9758991,9759361,-,MLT1B,LTR,ERVL-MaLR,0,390,1,9758991,9759361 +1 - chr10 10394670 10394909 chr10,10394500,10394909,+,MLT1J,LTR,ERVL-MaLR,75,495,-17,10394426,10394926 +1 + chr10 10419538 10419596 chr10,10419489,10419766,+,AluJb,SINE,Alu,9,278,-34,10419481,10419800 -5 + chr10 10784437 10784669 chr10,10784116,10784863,-,LTR1B,LTR,ERV1,0,824,1,10784116,10784863 +5 - chr10 10927058 10927233 chr10,10926846,10927426,+,L2a,LINE,L2,2010,2644,-775,10924837,10928201 -5 + chr10 10929601 10929655 chr10,10929520,10929736,+,MIR,SINE,MIR,2,225,-37,10929519,10929773 -3 + chr10 10944183 10944287 chr10,10944135,10944287,+,L2a,LINE,L2,1963,2124,-1295,10942173,10945582 -4 + chr10 10946786 10946868 chr10,10946659,10946868,-,MIR,SINE,MIR,-36,226,12,10946623,10946879 +1 - chr10 11030334 11030346 chr10,11030204,11030346,-,MIRb,SINE,MIR,-8,260,114,11030196,11030459 +5 - chr10 11168978 11169168 chr10,11168978,11169168,+,MIR,SINE,MIR,6,245,-23,11168973,11169191 -6 + chr10 11396495 11396594 chr10,11396495,11396594,+,MIR3,SINE,MIR,42,167,-41,11396454,11396635 +6 + chr10 11397453 11397536 chr10,11397453,11397536,-,AmnSINE1,SINE,5S-Deu-L2,-183,392,309,11397270,11397844 -6 - chr10 11398125 11398350 chr10,11398125,11398350,-,L2b,LINE,L2,-73,3314,3085,11398052,11401434 -6 - chr10 11398633 11398792 chr10,11398633,11398871,-,L1MC5,LINE,L1,-29,9275,9016,11398604,11407886 -5 - chr10 11611513 11611544 chr10,11611513,11611544,+,(CGG)n,Simple_repeat,Simple_repeat,1,34,0,11611513,11611544 +6 + chr10 11612004 11612203 chr10,11612004,11612203,+,MIR,SINE,MIR,12,208,-54,11611993,11612257 +6 + chr10 11679675 11679865 chr10,11679554,11679865,-,AluSx1,SINE,Alu,-6,306,1,11679548,11679865 -1 - chr10 11849770 11850058 chr10,11849770,11850058,+,MSTD,LTR,ERVL-MaLR,2,344,-52,11849769,11850110 -6 + chr10 11850936 11851223 chr10,11850936,11851223,+,AluJb,SINE,Alu,1,290,-22,11850936,11851245 -6 + chr10 11851642 11851756 chr10,11851642,11851774,+,FLAM_A,SINE,Alu,1,132,-10,11851642,11851784 -2 + chr10 11862830 11862905 chr10,11862830,11862905,+,L1M5,LINE,L1,5386,5460,-899,11857445,11863804 -6 + chr10 11887848 11887953 chr10,11887848,11888037,+,AluJb,SINE,Alu,5,173,-139,11887844,11888176 -2 + chr10 11894182 11894223 chr10,11894146,11894223,+,MIR,SINE,MIR,74,146,-116,11894073,11894339 -4 + chr10 12244751 12245029 chr10,12244746,12245029,+,AluSz,SINE,Alu,1,305,-7,12244746,12245036 -5 + chr10 12245250 12245346 chr10,12245250,12245556,-,AluJb,SINE,Alu,-11,301,1,12245239,12245556 +2 - chr10 12245788 12246080 chr10,12245788,12246080,+,AluJb,SINE,Alu,1,293,-19,12245788,12246099 -6 + chr10 12247461 12247744 chr10,12247461,12247744,+,L2,LINE,L2,1627,1914,-1505,12245835,12249249 -6 + chr10 12247764 12247845 chr10,12247764,12248013,+,AluY,SINE,Alu,47,293,-18,12247718,12248031 -1 + chr10 13675646 13675700 chr10,13675405,13675700,-,AluSx1,SINE,Alu,-14,298,1,13675391,13675700 -1 - chr10 13675734 13675905 chr10,13675734,13675905,-,HAL1b,LINE,L1,-7,2414,2230,13675727,13678134 -6 - chr10 13682521 13682785 chr10,13682489,13682807,-,AluSg,SINE,Alu,-1,309,1,13682488,13682807 -1 - chr10 13683162 13683183 chr10,13683055,13683183,-,AluSx,SINE,Alu,-49,263,133,13683006,13683315 -2 - chr10 13683302 13683616 chr10,13683302,13683616,+,AluJr,SINE,Alu,1,302,-10,13683302,13683626 +6 + chr10 13683712 13684007 chr10,13683712,13684007,-,AluSz,SINE,Alu,-12,300,2,13683700,13684008 -6 - chr10 13991849 13991992 chr10,13991849,13992037,-,L4_C_Mam,LINE,RTE-X,-92,5046,4854,13991757,13996890 -4 - chr10 14083317 14083438 chr10,14083317,14083438,-,MIR,SINE,MIR,-136,126,4,14083181,14083441 -6 - chr10 14661560 14661691 chr10,14661252,14661735,+,MLT2B1,LTR,ERVL,1,520,0,14661252,14661735 +5 + chr10 14878086 14878177 chr10,14878086,14878177,+,AluJb,SINE,Alu,200,288,-24,14877887,14878201 -6 + chr10 15241380 15241597 chr10,15241380,15241597,-,MER58B,DNA,hAT-Charlie,-15,326,103,15241365,15241699 -6 - chr10 15241605 15241767 chr10,15241605,15241893,-,L1MA9,LINE,L1,-10,6302,6003,15241595,15247895 -5 - chr10 16721610 16721704 chr10,16721610,16721704,+,Chap1_Mam,DNA,hAT-Charlie,130,223,-119,16721481,16721823 -6 + chr10 16748170 16748377 chr10,16748093,16748562,-,MLT1D,LTR,ERVL-MaLR,0,505,22,16748093,16748583 +1 - chr10 17137549 17137585 chr10,17137549,17137851,+,AluSz,SINE,Alu,1,306,-6,17137549,17137857 -1 + chr10 17214309 17214433 chr10,17214309,17214433,-,MIRb,SINE,MIR,-75,193,68,17214234,17214500 +6 - chr10 17215080 17215247 chr10,17215080,17215247,-,MER5A,DNA,hAT-Charlie,-26,163,2,17215054,17215248 +5 - chr10 17386936 17386994 chr10,17386606,17386994,-,MER48,LTR,ERV1,0,407,1,17386606,17386994 -1 - chr10 17386994 17387075 chr10,17386994,17387141,-,LTR33,LTR,ERVL,-341,174,37,17386653,17387177 -1 - chr10 17399105 17399156 chr10,17398888,17399156,+,MamRep605,LTR?,LTR?,455,726,-123,17398434,17399279 +2 + chr10 17399188 17399202 chr10,17399188,17399317,-,L2c,LINE,L2,-40,3347,3203,17399148,17402519 -4 - chr10 17409321 17409333 chr10,17409221,17409333,+,Tigger8,DNA,TcMar-Tigger,534,646,-21,17408688,17409354 +2 + chr10 17409422 17409581 chr10,17409422,17409581,+,FLAM_C,SINE,Alu,2,131,-12,17409421,17409593 +6 + chr10 17409582 17409627 chr10,17409582,17409627,+,AluYh9,SINE,Alu,200,246,-65,17409383,17409692 +6 + chr10 17409627 17409899 chr10,17409627,17409899,+,AluSp,SINE,Alu,34,307,-6,17409594,17409905 +6 + chr10 17409899 17409931 chr10,17409899,17409931,+,AluYh9,SINE,Alu,248,272,-39,17409652,17409970 +6 + chr10 17642110 17642256 chr10,17642110,17642256,-,L1ME4a,LINE,L1,-3,6121,5970,17642107,17648225 +6 - chr10 17642427 17642560 chr10,17642427,17642560,-,MIR,SINE,MIR,-11,251,101,17642416,17642660 +6 - chr10 17642560 17642834 chr10,17642560,17642834,-,L1ME4a,LINE,L1,-349,5775,5476,17642211,17648309 +6 - chr10 17642850 17643059 chr10,17642850,17643059,-,AluSx,SINE,Alu,-100,212,1,17642750,17643059 +6 - chr10 17695845 17696120 chr10,17695845,17696153,-,MLT1A0,LTR,ERVL-MaLR,0,396,8,17695845,17696160 +2 - chr10 17696603 17696697 chr10,17696577,17696697,+,MIRc,SINE,MIR,83,213,-55,17696495,17696752 -4 + chr10 18001786 18002084 chr10,18001680,18002084,-,L1MA2,LINE,L1,0,6304,5912,18001680,18007995 +5 - chr10 18007129 18007270 chr10,18007109,18007442,-,ERV3-16A3_I-int,LTR,ERVL,-114,5112,4776,18006995,18012217 +1 - chr10 18008550 18008623 chr10,18008119,18008623,+,MER1A,DNA,hAT-Charlie,1,528,-1,18008119,18008624 -4 + chr10 18008623 18008683 chr10,18008623,18008712,-,ERV3-16A3_I-int,LTR,ERVL,-758,4896,4812,18007865,18013523 +2 - chr10 18260748 18260813 chr10,18260748,18260813,+,(AGC)n,Simple_repeat,Simple_repeat,1,66,0,18260748,18260813 -6 + chr10 18513115 18513660 chr10,18512565,18513829,-,HSMAR1,DNA,TcMar-Mariner,-4,1283,2,18512561,18513830 +5 - chr10 18533037 18533122 chr10,18532911,18533122,-,L5,LINE,RTE-X,-199,2066,1855,18532712,18534976 +4 - chr10 18533277 18533336 chr10,18533277,18533365,-,MER3,DNA,hAT-Charlie,-108,101,6,18533169,18533370 +1 - chr10 18541586 18541891 chr10,18541579,18541891,+,AluSx,SINE,Alu,2,312,0,18541578,18541891 -5 + chr10 18542047 18542177 chr10,18542047,18542204,+,AluJb,SINE,Alu,136,301,-11,18541912,18542215 -2 + chr10 18653375 18653459 chr10,18653375,18653672,-,AluSx1,SINE,Alu,-16,296,1,18653359,18653672 +2 - chr10 18654600 18654901 chr10,18654600,18654901,+,AluSx4,SINE,Alu,1,308,-2,18654600,18654903 -5 + chr10 19290299 19290371 chr10,19290299,19290371,-,MER91A,DNA,hAT-Tip100,-28,168,90,19290271,19290460 +6 - chr10 19291422 19291480 chr10,19291400,19291558,+,FRAM,SINE,Alu,1,162,-14,19291400,19291572 -1 + chr10 19716799 19716890 chr10,19716615,19717683,-,Charlie1a,DNA,hAT-Charlie,-417,1038,3,19716198,19717685 +3 - chr10 19722079 19722209 chr10,19722079,19722209,-,L2b,LINE,L2,-2,3373,3244,19722077,19725452 +6 - chr10 19722207 19722225 chr10,19722207,19722295,+,MIR3,SINE,MIR,116,202,-6,19722092,19722301 -2 + chr10 19722330 19722588 chr10,19722308,19722619,+,AluJr,SINE,Alu,2,312,0,19722307,19722619 -3 + chr10 19724927 19724981 chr10,19724724,19725159,+,L1MB4,LINE,L1,4135,4574,-1572,19720590,19726731 -3 + chr10 21174032 21174090 chr10,21174032,21174090,+,(CTCCGG)n,Simple_repeat,Simple_repeat,1,54,0,21174032,21174090 +6 + chr10 21354671 21354764 chr10,21354649,21354778,+,FLAM_A,SINE,Alu,1,126,-16,21354649,21354794 -3 + chr10 21368509 21368555 chr10,21368509,21368727,-,MLT1K,LTR,ERVL-MaLR,-344,251,26,21368165,21368752 +2 - chr10 21370094 21370115 chr10,21370094,21370159,+,MIR3,SINE,MIR,113,177,-31,21369982,21370190 -2 + chr10 21865335 21865753 chr10,21864647,21865753,+,L1ME1,LINE,L1,5043,6178,-1,21859605,21865754 -5 + chr10 21865852 21865921 chr10,21865852,21866155,+,AluSx,SINE,Alu,1,303,-9,21865852,21866164 -1 + chr10 22218074 22218195 chr10,22217832,22218195,-,THE1D,LTR,ERVL-MaLR,0,381,5,22217832,22218199 -1 - chr10 22218286 22218371 chr10,22218286,22218371,+,A-rich,Low_complexity,Low_complexity,1,85,0,22218286,22218371 +6 + chr10 22218394 22218798 chr10,22218394,22218798,+,LTR16,LTR,ERVL,6,421,-17,22218389,22218815 +6 + chr10 22219006 22219296 chr10,22219006,22219296,+,ERV3-16A3_I-int,LTR,ERVL,169,469,-4757,22218838,22224053 +6 + chr10 22219373 22220274 chr10,22219373,22220274,+,ERV3-16A3_I-int,LTR,ERVL,599,1539,-3687,22218775,22223961 +6 + chr10 22220274 22220528 chr10,22220274,22220528,+,AluJo,SINE,Alu,1,259,-53,22220274,22220581 +6 + chr10 22220528 22220897 chr10,22220528,22220897,+,ERV3-16A3_I-int,LTR,ERVL,1540,1902,-3324,22218989,22224221 +6 + chr10 22220904 22221130 chr10,22220904,22221130,+,AluJr,SINE,Alu,75,300,-12,22220830,22221142 +6 + chr10 22221144 22221168 chr10,22221144,22221225,+,MLT1H1,LTR,ERVL-MaLR,469,547,-8,22220676,22221233 +5 + chr10 22252432 22252498 chr10,22252432,22252498,+,G-rich,Low_complexity,Low_complexity,1,66,0,22252432,22252498 +6 + chr10 22412849 22412870 chr10,22412601,22412870,-,AluSc,SINE,Alu,-42,267,1,22412559,22412870 -2 - chr10 22693973 22694152 chr10,22693973,22694152,+,MER8,DNA,TcMar-Tigger,61,239,0,22693913,22694152 -6 + chr10 22694165 22694331 chr10,22694165,22694331,+,Charlie7,DNA,hAT-Charlie,13,201,-2411,22694153,22696742 -6 + chr10 22694423 22694639 chr10,22694423,22694749,+,Charlie7,DNA,hAT-Charlie,1502,1834,-778,22692922,22695527 -1 + chr10 24481180 24481212 chr10,24481112,24481212,-,L2c,LINE,L2,-10,3377,3292,24481102,24484503 +5 - chr10 24481591 24481648 chr10,24481591,24481648,+,Tigger16a,DNA,TcMar-Tigger,802,859,-98,24480790,24481746 -6 + chr10 24482739 24483034 chr10,24482739,24483038,+,AluJr,SINE,Alu,3,301,-11,24482737,24483049 -1 + chr10 25117292 25117413 chr10,25117282,25117570,-,AluSz,SINE,Alu,-24,288,1,25117258,25117570 -3 - chr10 25126251 25126387 chr10,25126231,25126387,-,FRAM,SINE,Alu,-12,164,1,25126219,25126387 -2 - chr10 25126466 25126498 chr10,25126466,25126525,+,MIRc,SINE,MIR,166,229,-39,25126301,25126564 +4 + chr10 25159163 25159191 chr10,25159163,25159191,+,(TAAA)n,Simple_repeat,Simple_repeat,1,28,0,25159163,25159191 -6 + chr10 25160364 25160414 chr10,25160364,25160414,+,(TTTC)n,Simple_repeat,Simple_repeat,1,51,0,25160364,25160414 +6 + chr10 25160512 25160674 chr10,25160512,25160674,-,L1MB4,LINE,L1,-90,6153,5992,25160422,25166665 -6 - chr10 25160643 25161194 chr10,25160643,25161194,-,L1MB4,LINE,L1,-344,5836,5279,25160299,25166472 -6 - chr10 25932308 25932361 chr10,25932036,25932520,-,Charlie1b,DNA,hAT-Charlie,-5,518,1,25932031,25932520 +3 - chr10 26589865 26589940 chr10,26589644,26589940,-,AluSz,SINE,Alu,-19,293,1,26589625,26589940 -1 - chr10 26648951 26649050 chr10,26648911,26649208,-,AluSz,SINE,Alu,-18,294,1,26648893,26649208 -3 - chr10 26650702 26650791 chr10,26650702,26650955,+,AluJo,SINE,Alu,53,305,-7,26650650,26650962 +4 + chr10 26668442 26668494 chr10,26668442,26668632,+,L1M5,LINE,L1,5603,5839,-285,26662840,26668917 -2 + chr10 26695097 26695402 chr10,26695097,26695402,-,AluJr,SINE,Alu,-14,298,1,26695083,26695402 +6 - chr10 26695614 26695862 chr10,26695614,26695862,-,MamRTE1,LINE,RTE-BovB,-91,3721,3423,26695523,26699284 +6 - chr10 26695862 26696162 chr10,26695862,26696162,-,AluSz,SINE,Alu,-7,305,5,26695855,26696166 +6 - chr10 26696162 26696185 chr10,26696162,26696185,-,MamRTE1,LINE,RTE-BovB,-390,3422,3403,26695772,26699587 +6 - chr10 26696706 26696762 chr10,26696706,26696762,+,L2c,LINE,L2,3246,3304,-83,26693461,26696845 -6 + chr10 26718041 26718073 chr10,26718041,26718329,-,AluSz,SINE,Alu,-6,306,14,26718035,26718342 -4 - chr10 26718733 26718778 chr10,26718478,26718779,+,AluSq2,SINE,Alu,1,301,-12,26718478,26718791 +5 + chr10 26931217 26931241 chr10,26931217,26931241,+,(TTTA)n,Simple_repeat,Simple_repeat,1,24,0,26931217,26931241 -6 + chr10 26934643 26934665 chr10,26934643,26934665,+,(AATA)n,Simple_repeat,Simple_repeat,1,22,0,26934643,26934665 -6 + chr10 26940740 26940854 chr10,26940740,26940854,+,MIRb,SINE,MIR,87,204,-64,26940654,26940918 -6 + chr10 26940960 26941046 chr10,26940960,26941046,-,MIRc,SINE,MIR,-39,229,119,26940921,26941164 +6 - chr10 26943376 26943491 chr10,26943376,26943502,+,AluJb,SINE,Alu,1,126,-186,26943376,26943688 -2 + chr10 27243131 27243266 chr10,27243131,27243266,+,Helitron3Na_Mam,RC,Helitron,12,155,-331,27243120,27243597 +6 + chr10 27343886 27344528 chr10,27343886,27344528,-,L1MC,LINE,L1,-1015,5131,4472,27342871,27348999 -6 - chr10 27764651 27764773 chr10,27764628,27764920,-,AluJr4,SINE,Alu,-11,301,1,27764617,27764920 -3 - chr10 27767465 27767762 chr10,27767465,27767762,-,LTR67B,LTR,ERVL,-303,317,24,27767162,27767785 -6 - chr10 28049420 28049615 chr10,28049420,28049615,+,MIRb,SINE,MIR,10,210,-58,28049411,28049673 +5 + chr10 28436206 28436221 chr10,28436206,28436236,-,LTR6A,LTR,ERV1,-462,102,73,28435744,28436308 +2 - chr10 28522985 28523280 chr10,28522985,28523280,-,AluSp,SINE,Alu,-16,297,1,28522969,28523280 +6 - chr10 28523573 28523758 chr10,28523573,28523758,-,AluSc,SINE,Alu,0,309,122,28523573,28523879 +6 - chr10 28523760 28524611 chr10,28523760,28525077,-,L1M4,LINE,L1,-5816,1701,322,28517944,28525398 +2 - chr10 28525948 28526008 chr10,28525948,28526198,-,L2,LINE,L2,-1167,2252,1992,28524781,28528189 +3 - chr10 28531888 28532180 chr10,28531888,28532180,+,AluJr,SINE,Alu,2,291,-21,28531887,28532201 -6 + chr10 28744510 28744663 chr10,28744389,28744943,+,MER34C_,LTR,ERV1,1,582,-3,28744389,28744946 +5 + chr10 28789890 28790008 chr10,28789890,28790008,-,MER94,DNA,hAT-Blackjack,-14,120,2,28789876,28790009 +6 - chr10 28793648 28794003 chr10,28793560,28794003,+,MLT2B3,LTR,ERVL,1,421,-146,28793560,28794149 +1 + chr10 28794032 28794133 chr10,28794032,28794193,+,AluJr,SINE,Alu,1,129,-183,28794032,28794376 +4 + chr10 28794542 28794643 chr10,28794483,28794673,+,AluJr,SINE,Alu,130,305,-7,28794354,28794680 -3 + chr10 28795262 28795376 chr10,28795262,28795400,+,FLAM_C,SINE,Alu,1,133,-10,28795262,28795410 -1 + chr10 28795966 28796124 chr10,28795966,28796239,-,MLT1J1,LTR,ERVL-MaLR,-166,278,1,28795800,28796239 -1 - chr10 28795966 28796113 chr10,28795966,28796239,-,MLT1J1,LTR,ERVL-MaLR,-166,278,1,28795800,28796239 +1 - chr10 28801877 28801964 chr10,28801877,28802041,+,Plat_L3,LINE,CR1,2329,2494,-1092,28799549,28803133 +4 + chr10 28806047 28806138 chr10,28805827,28806159,-,AluSx3,SINE,Alu,-6,305,2,28805821,28806160 -5 - chr10 29420498 29420628 chr10,29420498,29420628,+,L1MA6,LINE,L1,5732,5859,-441,29414767,29421069 +5 + chr10 29420626 29420740 chr10,29420626,29420740,+,L1MA5,LINE,L1,5746,5859,-441,29414881,29421181 +6 + chr10 29420738 29420847 chr10,29420738,29420847,+,L1MA5,LINE,L1,5746,5857,-443,29414993,29421290 +5 + chr10 29468920 29468990 chr10,29468887,29468990,+,L2b,LINE,L2,3224,3331,-44,29465664,29469034 +2 + chr10 29469065 29469122 chr10,29469065,29469123,+,L2b,LINE,L2,3328,3383,-4,29465738,29469127 +5 + chr10 29483385 29483548 chr10,29483385,29483548,+,MER5B,DNA,hAT-Charlie,12,178,0,29483374,29483548 +5 + chr10 30302826 30302854 chr10,30302782,30302854,-,MIR,SINE,MIR,-6,256,183,30302776,30303036 +5 - chr10 30304291 30304365 chr10,30304291,30304365,+,L1MEg,LINE,L1,8,77,-6007,30304284,30310372 -6 + chr10 30304367 30304525 chr10,30304367,30304525,+,AluSx,SINE,Alu,1,157,-155,30304367,30304680 -6 + chr10 30304552 30304617 chr10,30304552,30304617,+,A-rich,Low_complexity,Low_complexity,1,64,0,30304552,30304617 -6 + chr10 30304675 30304723 chr10,30304675,30304723,+,(AAGG)n,Simple_repeat,Simple_repeat,1,51,0,30304675,30304723 -6 + chr10 30304728 30305431 chr10,30304728,30305431,+,L1MEg,LINE,L1,61,911,-5173,30304668,30310604 -6 + chr10 30305431 30305741 chr10,30305431,30305741,+,AluSx1,SINE,Alu,1,310,-2,30305431,30305743 -6 + chr10 30305741 30305934 chr10,30305741,30305934,+,L1MEg,LINE,L1,912,1115,-4969,30304830,30310903 -6 + chr10 30305992 30306066 chr10,30305992,30306506,+,L1MC5,LINE,L1,8766,9290,-14,30297227,30306520 -1 + chr10 30553854 30553952 chr10,30553457,30553952,+,MER4CL34,LTR,ERV1,1,765,0,30553457,30553952 -5 + chr10 30576820 30576837 chr10,30576820,30577503,+,HERV16-int,LTR,ERVL,1253,2026,-2970,30575568,30580473 +4 + chr10 30832133 30832446 chr10,30832133,30832446,+,LFSINE_Vert,SINE,tRNA,136,458,-1,30831998,30832447 -6 + chr10 31259982 31260195 chr10,31259731,31260195,+,L2c,LINE,L2,2882,3333,-54,31256850,31260249 +2 + chr10 31260195 31260513 chr10,31260195,31260513,-,AluSq2,SINE,Alu,-9,304,1,31260186,31260513 -6 - chr10 31260513 31260565 chr10,31260513,31260565,+,L2c,LINE,L2,3334,3383,-4,31257180,31260569 +6 + chr10 31260976 31261100 chr10,31260976,31261100,-,FLAM_C,SINE,Alu,-10,133,11,31260966,31261110 -6 - chr10 31307717 31307929 chr10,31307638,31307929,+,L1ME4c,LINE,L1,356,661,-169,31307283,31308098 -5 + chr10 31309893 31310015 chr10,31309737,31310048,+,AluSq2,SINE,Alu,1,313,0,31309737,31310048 -3 + chr10 31316924 31317016 chr10,31316924,31317016,-,L2b,LINE,L2,-4,3383,3287,31316920,31320302 +6 - chr10 31317806 31317883 chr10,31317806,31317883,-,MIRb,SINE,MIR,0,262,179,31317806,31318061 +6 - chr10 31319539 31319601 chr10,31319539,31319601,+,(CCG)n,Simple_repeat,Simple_repeat,1,63,0,31319539,31319601 -6 + chr10 31693084 31693145 chr10,31693040,31693145,+,L1ME4a,LINE,L1,5644,5752,-2243,31687397,31695388 -5 + chr10 32281686 32281812 chr10,32281667,32281970,-,AluSx1,SINE,Alu,-11,301,1,32281656,32281970 -1 - chr10 32282491 32282533 chr10,32282248,32282533,+,AluJb,SINE,Alu,1,297,-15,32282248,32282548 +2 + chr10 32347085 32347114 chr10,32347085,32347114,+,(CCGCT)n,Simple_repeat,Simple_repeat,1,29,0,32347085,32347114 +6 + chr10 32888574 32888840 chr10,32888574,32888840,-,L1ME1,LINE,L1,-30,6149,5879,32888544,32894718 +6 - chr10 32982541 32982685 chr10,32982518,32982768,-,AluSz6,SINE,Alu,-11,301,55,32982507,32982822 -1 - chr10 33081663 33081749 chr10,33081663,33081749,-,MER81,DNA,hAT-Blackjack,-25,89,1,33081638,33081749 -6 - chr10 33081861 33081959 chr10,33081861,33081959,+,MLT1J,LTR,ERVL-MaLR,408,505,-7,33081454,33081966 +6 + chr10 33081960 33082102 chr10,33081960,33082167,+,hAT-N1_Mam,DNA,hAT-Tip100?,108,325,-15,33081853,33082182 +5 + chr10 33116657 33116672 chr10,33116657,33116766,-,MIR1_Amn,SINE,MIR,-75,155,39,33116582,33116804 +1 - chr10 33590622 33590698 chr10,33590608,33590698,+,MamRep4096,DNA,hAT-Tip100,315,405,-21,33590294,33590719 -4 + chr10 33599941 33600040 chr10,33599941,33600069,-,L2a,LINE,L2,0,3426,3248,33599941,33603316 +1 - chr10 33684863 33685172 chr10,33684863,33685172,-,AluSz,SINE,Alu,-6,306,1,33684857,33685172 -6 - chr10 33766304 33766405 chr10,33766304,33766405,+,MLT1O,LTR,ERVL-MaLR,433,534,-8,33765872,33766413 -6 + chr10 33772183 33772254 chr10,33771621,33772254,+,MER41B,LTR,ERV1,1,634,0,33771621,33772254 -4 + chr10 33909238 33909322 chr10,33907606,33909410,-,L1MEc,LINE,L1,-4340,2075,113,33903266,33909522 -1 - chr10 33909415 33909498 chr10,33909392,33909712,-,L1PA16,LINE,L1,-3,6163,5824,33909389,33915535 -3 - chr10 33910279 33910413 chr10,33910257,33910549,-,AluSx,SINE,Alu,-16,296,1,33910241,33910549 -3 - chr10 35099517 35099600 chr10,35099517,35099767,+,AluSx,SINE,Alu,36,304,-8,35099482,35099775 -2 + chr10 35100844 35100889 chr10,35100819,35100889,-,L1MD2,LINE,L1,-229,6130,6060,35100590,35106948 +4 - chr10 35118183 35118197 chr10,35117874,35118197,-,L1MC1,LINE,L1,0,6333,6000,35117874,35124196 +5 - chr10 35118238 35118530 chr10,35118238,35118530,-,L1MEd,LINE,L1,-1058,1407,957,35117180,35119486 +6 - chr10 35118509 35118740 chr10,35118509,35118762,-,L1MEh,LINE,L1,-1311,924,674,35117198,35119435 +2 - chr10 35126816 35126834 chr10,35126759,35126834,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,75,0,35126759,35126834 -4 + chr10 35230556 35230598 chr10,35230556,35230795,+,L1MD,LINE,L1,3691,3917,-2229,35226866,35233024 -1 + chr10 35314801 35315088 chr10,35314801,35315088,+,AluSp,SINE,Alu,2,290,-23,35314800,35315111 -6 + chr10 35315119 35315425 chr10,35315119,35315819,-,L1PREC2,LINE,L1,-16,6144,5433,35315103,35321251 +5 - chr10 35320859 35320998 chr10,35320859,35321132,+,AluJo,SINE,Alu,1,299,-13,35320859,35321145 -1 + chr10 35335928 35336050 chr10,35335928,35336111,+,AluJr,SINE,Alu,134,312,0,35335795,35336111 -3 + chr10 35606044 35606344 chr10,35606044,35606344,-,AluSc8,SINE,Alu,-11,300,1,35606033,35606344 +6 - chr10 35606825 35607125 chr10,35606825,35607125,-,MamRep434,DNA,TcMar-Tigger,-5,421,93,35606820,35607217 +6 - chr10 35607248 35607275 chr10,35607248,35607275,+,L2b,LINE,L2,3344,3370,-5,35603905,35607280 -6 + chr10 35607306 35607434 chr10,35607306,35607434,+,FLAM_A,SINE,Alu,3,130,-12,35607304,35607446 -6 + chr10 35896874 35897000 chr10,35896723,35897000,-,AluSz,SINE,Alu,0,312,1,35896723,35897000 +5 - chr10 35897097 35897259 chr10,35897097,35897259,+,MIR,SINE,MIR,28,185,-77,35897070,35897336 -6 + chr10 36439763 36439797 chr10,36439763,36439852,+,(AAGA)n,Simple_repeat,Simple_repeat,1,89,0,36439763,36439852 +5 + chr10 37240887 37240945 chr10,37240659,37240945,+,L2c,LINE,L2,3071,3369,-18,37237589,37240963 +1 + chr10 37241948 37242049 chr10,37241882,37242492,-,L1MC4,LINE,L1,-140,7902,7238,37241742,37249729 -5 - chr10 37342326 37342413 chr10,37341197,37342995,-,L1M2,LINE,L1,-3223,4339,2492,37337974,37345486 -3 - chr10 37783892 37784113 chr10,37783821,37784113,-,AluSp,SINE,Alu,-19,294,1,37783802,37784113 +4 - chr10 37791728 37791789 chr10,37791728,37791789,+,L1MD3,LINE,L1,6877,6937,-1058,37784852,37792847 +6 + chr10 37791826 37791937 chr10,37791826,37792277,-,LTR75B,LTR,ERVL,-86,522,1,37791740,37792277 -5 - chr10 37858187 37858318 chr10,37858187,37858318,+,MIRb,SINE,MIR,118,253,-15,37858070,37858333 +6 + chr10 37859078 37859094 chr10,37858859,37859094,-,L1MD3,LINE,L1,-8,7987,7747,37858851,37866840 -2 - chr10 37859094 37859110 chr10,37859094,37859852,-,LTR17,LTR,ERV1,0,780,1,37859094,37859852 -5 - chr10 38137337 38137907 chr10,38136453,38137907,-,L1MB4,LINE,L1,-4789,1857,279,38131664,38138185 -1 - chr10 38138816 38138920 chr10,38138816,38138920,+,MIR3,SINE,MIR,63,180,-28,38138754,38138948 +6 + chr10 38139372 38139664 chr10,38139372,38139664,-,AluSc,SINE,Alu,-16,293,2,38139356,38139665 -6 - chr10 38140227 38141807 chr10,38140227,38141807,+,L1MD3,LINE,L1,6280,7993,-2,38133948,38141809 +6 + chr10 38141827 38142094 chr10,38141827,38142094,+,AluSz,SINE,Alu,1,267,-45,38141827,38142139 +6 + chr10 38142657 38143069 chr10,38142657,38143069,-,L1MDa,LINE,L1,-4208,2425,1979,38138449,38145047 -6 - chr10 38149968 38150000 chr10,38149876,38150000,+,L2a,LINE,L2,3266,3386,-40,38146611,38150040 +1 + chr10 42486979 42487016 chr10,42486523,42487016,+,MER9B,LTR,ERVK,1,495,-4,42486523,42487020 +2 + chr10 42487020 42487126 chr10,42487020,42494108,+,HERVK9-int,LTR,ERVK,1,7369,-65,42487020,42494173 +4 + chr10 42492080 42492342 chr10,42487020,42494108,+,HERVK9-int,LTR,ERVK,1,7369,-65,42487020,42494173 +3 + chr10 42494015 42494108 chr10,42487020,42494108,+,HERVK9-int,LTR,ERVK,1,7369,-65,42487020,42494173 +2 + chr10 42494108 42494602 chr10,42494108,42494602,+,MER9B,LTR,ERVK,1,499,0,42494108,42494602 +6 + chr10 42494605 42494725 chr10,42494605,42494725,-,MER8,DNA,TcMar-Tigger,-56,183,64,42494549,42494788 -6 - chr10 42494769 42494826 chr10,42494769,42494826,-,MER8,DNA,TcMar-Tigger,-179,60,3,42494590,42494828 -6 - chr10 42494898 42495336 chr10,42494898,42495411,+,MER9a1,LTR,ERVK,1,513,0,42494898,42495411 +5 + chr10 42674197 42674357 chr10,42674072,42674381,+,AluSx,SINE,Alu,1,301,-11,42674072,42674392 -5 + chr10 42691535 42691723 chr10,42691188,42691969,-,REP522,Satellite,telo,-236,1581,675,42690952,42692643 +1 - chr10 42704218 42704253 chr10,42704218,42704253,+,A-rich,Low_complexity,Low_complexity,1,35,0,42704218,42704253 +6 + chr10 42705111 42705440 chr10,42705111,42705440,-,MER44A,DNA,TcMar-Tigger,-2,337,1,42705109,42705440 -6 - chr10 42705534 42705578 chr10,42705534,42705578,+,A-rich,Low_complexity,Low_complexity,1,44,0,42705534,42705578 +6 + chr10 42705737 42706284 chr10,42705737,42706284,-,L1PREC2,LINE,L1,-1099,5047,4500,42704638,42710783 -6 - chr10 42706286 42706451 chr10,42706286,42706451,+,L1PREC2,LINE,L1,5993,6158,-2,42700294,42706453 +6 + chr10 42873669 42873720 chr10,42873669,42873720,+,L4_C_Mam,LINE,RTE-X,4894,4944,-194,42868776,42873914 +6 + chr10 42980538 42980559 chr10,42980538,42980624,+,MIRb,SINE,MIR,119,206,-62,42980420,42980686 -2 + chr10 43136824 43136844 chr10,43136729,43136844,-,MER89,LTR,ERV1,-27,532,418,43136702,43137261 +5 - chr10 43137146 43137459 chr10,43137146,43137459,+,AluJb,SINE,Alu,2,310,-2,43137145,43137461 -6 + chr10 43138045 43138105 chr10,43138045,43138105,-,MIR3,SINE,MIR,-56,152,90,43137989,43138194 +6 - chr10 43327371 43327462 chr10,43327352,43327856,+,MLT2B3,LTR,ERVL,1,554,0,43327352,43327856 +3 + chr10 43327670 43327856 chr10,43327352,43327856,+,MLT2B3,LTR,ERVL,1,554,0,43327352,43327856 +2 + chr10 43327872 43327932 chr10,43327872,43328005,+,LTR108e_Mam,LTR,ERVL,75,212,-336,43327798,43328341 +5 + chr10 43420738 43420938 chr10,43420659,43420938,-,AluJo,SINE,Alu,-20,292,1,43420639,43420938 -1 - chr10 43421817 43422100 chr10,43421817,43422115,+,AluJr4,SINE,Alu,2,300,-12,43421816,43422127 +5 + chr10 43628817 43628978 chr10,43628446,43629216,+,LTR101_Mam,LTR,ERVL,1,807,-22,43628446,43629238 +1 + chr10 43644867 43644910 chr10,43644867,43644910,-,L2a,LINE,L2,-12,3414,3371,43644855,43648280 -6 - chr10 43644878 43645031 chr10,43644878,43645031,-,MIR,SINE,MIR,-18,244,41,43644860,43645071 -6 - chr10 43647112 43647209 chr10,43647061,43647373,-,AluJr4,SINE,Alu,-13,299,1,43647048,43647373 -3 - chr10 43647807 43647875 chr10,43647807,43647875,+,MIR1_Amn,SINE,MIR,40,109,-121,43647768,43647996 +6 + chr10 43671718 43671898 chr10,43671714,43671898,+,MER91B,DNA,hAT-Tip100,1,187,-3,43671714,43671901 +2 + chr10 43672049 43672078 chr10,43672049,43672326,+,MER58B,DNA,hAT-Charlie,40,341,0,43672010,43672326 +4 + chr10 43672308 43672326 chr10,43672049,43672326,+,MER58B,DNA,hAT-Charlie,40,341,0,43672010,43672326 +2 + chr10 43673882 43673952 chr10,43673882,43673952,+,MIRb,SINE,MIR,116,187,-81,43673767,43674033 +6 + chr10 43777562 43777811 chr10,43777561,43777811,-,L1PA15,LINE,L1,0,6165,5910,43777561,43783720 +5 - chr10 43849674 43849889 chr10,43849583,43849889,+,MLT1N2,LTR,ERVL-MaLR,1,356,-206,43849583,43850095 +2 + chr10 43849901 43850622 chr10,43849901,43850647,-,L1MD,LINE,L1,-2682,3464,2645,43847219,43853291 -5 - chr10 43861879 43861927 chr10,43861794,43862260,-,L1MC5a,LINE,L1,-285,2492,2021,43861509,43864280 -3 - chr10 43867238 43867339 chr10,43867238,43867364,+,L2c,LINE,L2,3027,3156,-231,43864212,43867595 +4 + chr10 43874353 43874412 chr10,43874353,43874415,+,L2,LINE,L2,592,659,-2760,43873762,43877175 +4 + chr10 43894980 43895433 chr10,43894980,43895785,+,MER21B,LTR,ERVL,1,862,-6,43894980,43895791 +5 + chr10 43901768 43901823 chr10,43901768,43901962,+,MIR,SINE,MIR,74,268,0,43901695,43901962 -2 + chr10 43913759 43913912 chr10,43913710,43913912,-,MIRb,SINE,MIR,0,262,16,43913710,43913927 -2 - chr10 43939094 43939290 chr10,43939094,43939290,-,LTR41B,LTR,ERVL,-560,208,10,43938534,43939299 -6 - chr10 43939811 43940205 chr10,43939811,43940205,-,L2,LINE,L2,-1231,2188,1759,43938580,43941963 -6 - chr10 43940442 43940493 chr10,43940442,43940493,+,(GT)n,Simple_repeat,Simple_repeat,1,52,0,43940442,43940493 +6 + chr10 43940493 43940526 chr10,43940493,43940526,-,MamRTE1,LINE,RTE-BovB,-1313,2499,2470,43939180,43942995 -6 - chr10 43940824 43940865 chr10,43940824,43940865,+,(TTTTGGA)n,Simple_repeat,Simple_repeat,1,42,0,43940824,43940865 +6 + chr10 43944362 43944390 chr10,43944333,43944390,-,L3b,LINE,CR1,-246,4986,4925,43944087,43949314 -2 - chr10 44260049 44260145 chr10,44260049,44260202,-,MIR,SINE,MIR,-38,224,64,44260011,44260265 +2 - chr10 44292207 44292287 chr10,44292207,44292287,-,MIRb,SINE,MIR,-9,259,179,44292198,44292465 +6 - chr10 44292287 44292325 chr10,44292287,44292325,+,GA-rich,Low_complexity,Low_complexity,1,40,0,44292287,44292325 -6 + chr10 44591227 44591418 chr10,44591227,44591418,-,L1ME3A,LINE,L1,-13,6160,5953,44591214,44597370 +6 - chr10 44591425 44591621 chr10,44591425,44591621,-,L1MC,LINE,L1,-2018,4128,3904,44589407,44595524 +6 - chr10 44825502 44825581 chr10,44825256,44825670,-,MER44B,DNA,TcMar-Tigger,0,550,111,44825256,44825780 +3 - chr10 44831000 44831245 chr10,44830389,44831710,-,Tigger1,DNA,TcMar-Tigger,0,2418,1055,44830389,44832764 +3 - chr10 44834066 44834149 chr10,44834037,44834149,-,L2b,LINE,L2,-6,3369,3247,44834031,44837395 +4 - chr10 44899614 44899898 chr10,44899496,44899898,+,MLT1E2,LTR,ERVL-MaLR,8,431,-196,44899489,44900094 -5 + chr10 44907073 44907118 chr10,44907073,44907136,+,MIRc,SINE,MIR,93,155,-113,44906981,44907249 -2 + chr10 44923081 44923188 chr10,44922944,44923188,-,MLT1G,LTR,ERVL-MaLR,-2,589,346,44922942,44923533 +4 - chr10 44937522 44937629 chr10,44937522,44937629,+,MIR3,SINE,MIR,5,131,-77,44937518,44937706 +6 + chr10 45121053 45121171 chr10,45121053,45121312,+,MamRTE1,LINE,RTE-BovB,3485,3744,-68,45117569,45121380 -2 + chr10 45146828 45146945 chr10,45146692,45146973,+,AluSq2,SINE,Alu,2,283,-30,45146691,45147003 -3 + chr10 45149642 45149913 chr10,45149642,45149913,-,LTR19-int,LTR,ERV1,-4642,944,675,45145000,45150587 -6 - chr10 45149963 45149991 chr10,45149963,45149991,-,MLT1D,LTR,ERVL-MaLR,-2,503,476,45149961,45150466 -6 - chr10 45149991 45150030 chr10,45149991,45150030,+,(ATT)n,Simple_repeat,Simple_repeat,1,39,0,45149991,45150030 +6 + chr10 45150030 45150302 chr10,45150030,45150302,-,AluY,SINE,Alu,-28,283,12,45150002,45150313 -6 - chr10 45150302 45150659 chr10,45150302,45150725,-,MLT1D,LTR,ERVL-MaLR,-30,475,2,45150272,45150726 -4 - chr10 45170007 45170279 chr10,45169968,45170279,-,AluSg,SINE,Alu,0,310,1,45169968,45170279 -2 - chr10 45170706 45171072 chr10,45170706,45171072,+,L2,LINE,L2,2695,3080,-339,45168012,45171411 +6 + chr10 45171303 45171339 chr10,45171303,45171339,+,(TGTTT)n,Simple_repeat,Simple_repeat,1,37,0,45171303,45171339 +6 + chr10 46370347 46370461 chr10,46370126,46370461,+,LTR14A,LTR,ERVK,1,344,0,46370126,46370461 +1 + chr10 46596009 46596067 chr10,46595871,46596067,-,MLT1H,LTR,ERVL-MaLR,-304,185,30,46595567,46596096 +5 - chr10 46601909 46601935 chr10,46601634,46601935,-,AluJr,SINE,Alu,-6,306,6,46601628,46601940 -1 - chr10 46602189 46602281 chr10,46602189,46602281,+,LTR78B,LTR,ERV1,410,501,-795,46601780,46603076 +6 + chr10 46602388 46602515 chr10,46602388,46602884,+,LTR78B,LTR,ERV1,770,1244,-52,46601619,46602936 +4 + chr10 46605269 46605492 chr10,46605269,46605492,+,L1ME4a,LINE,L1,5784,6014,-110,46599486,46605602 +6 + chr10 46605493 46605641 chr10,46605493,46605662,-,AluJo,SINE,Alu,-12,300,137,46605481,46605798 -4 - chr10 46607376 46607769 chr10,46607292,46607772,+,LTR67B,LTR,ERVL,30,618,-2,46607263,46607774 +3 + chr10 46611574 46611868 chr10,46611574,46611868,+,AluSz,SINE,Alu,1,294,-18,46611574,46611886 +6 + chr10 46632412 46632455 chr10,46632412,46632521,+,L1MC5,LINE,L1,9175,9291,-13,46623238,46632534 +4 + chr10 46633017 46633099 chr10,46632992,46633300,-,L1PA16,LINE,L1,-3,6163,5837,46632989,46639136 -3 - chr10 47588802 47589113 chr10,47588802,47589113,-,AluJb,SINE,Alu,0,312,1,47588802,47589113 +6 - chr10 47908064 47908186 chr10,47907789,47908187,-,MER57-int,LTR,ERV1,-7133,404,2,47900656,47908188 +5 - chr10 47920738 47920852 chr10,47920668,47920852,+,MER5A,DNA,hAT-Charlie,1,184,-5,47920668,47920857 +2 + chr10 47922779 47922804 chr10,47922779,47922804,+,(GTG)n,Simple_repeat,Simple_repeat,1,25,0,47922779,47922804 +6 + chr10 47956026 47956164 chr10,47955345,47956491,-,Tigger3b,DNA,TcMar-Tigger,-8,1223,1,47955337,47956491 +3 - chr10 47970434 47970497 chr10,47970434,47970630,-,ORSL-2a,DNA,hAT-Tip100,-2,340,150,47970432,47970779 +2 - chr10 47985519 47985532 chr10,47984877,47985532,+,L1MD2,LINE,L1,5045,5720,-522,47979833,47986054 -5 + chr10 47985532 47985711 chr10,47985532,47985711,-,L1ME2,LINE,L1,-276,6168,5990,47985256,47991700 +6 - chr10 47985746 47985783 chr10,47985746,47985783,+,MADE1,DNA,TcMar-Mariner,44,80,0,47985703,47985783 -6 + chr10 47985815 47986226 chr10,47985815,47986226,-,L1ME2,LINE,L1,-235,5929,5527,47985580,47991752 +1 - chr10 47986260 47986450 chr10,47986260,47986450,-,L1MD2,LINE,L1,-756,5390,5192,47985504,47991641 +6 - chr10 47986735 47986762 chr10,47986735,47986762,+,(CCCG)n,Simple_repeat,Simple_repeat,1,29,0,47986735,47986762 -6 + chr10 48443963 48444409 chr10,48443963,48444409,-,Tigger13a,DNA,TcMar-Tigger,-249,522,48,48443714,48444456 +6 - chr10 48444742 48444830 chr10,48444742,48444830,+,MIRb,SINE,MIR,108,192,-76,48444635,48444906 -6 + chr10 48445089 48445127 chr10,48445089,48445127,+,(CTGC)n,Simple_repeat,Simple_repeat,1,38,0,48445089,48445127 -6 + chr10 48510731 48510918 chr10,48510731,48510918,+,MIR3,SINE,MIR,3,184,-24,48510729,48510942 -6 + chr10 48624004 48624149 chr10,48623994,48624149,+,MIRb,SINE,MIR,46,197,-71,48623949,48624220 -5 + chr10 48624156 48624432 chr10,48624156,48624465,+,AluSx,SINE,Alu,1,308,-4,48624156,48624469 -2 + chr10 48625042 48625093 chr10,48625042,48625196,+,MIRb,SINE,MIR,35,187,-81,48625008,48625277 -1 + chr10 48878022 48878125 chr10,48877898,48878125,+,MIRb,SINE,MIR,17,252,-16,48877882,48878141 +1 + chr10 48984564 48984801 chr10,48984466,48984801,-,MLT1B,LTR,ERVL-MaLR,0,390,8,48984466,48984808 -1 - chr10 48992410 48993046 chr10,48991348,48995915,-,HERVL-int,LTR,ERVL,0,5654,1099,48991348,48997013 +1 - chr10 49121904 49121945 chr10,49121904,49121945,+,(CTTCTT)n,Simple_repeat,Simple_repeat,1,43,0,49121904,49121945 +6 + chr10 49137495 49137710 chr10,49137279,49137768,+,MLT1G3,LTR,ERVL-MaLR,14,579,-16,49137266,49137784 +1 + chr10 49141253 49141367 chr10,49141242,49141786,-,Charlie20a,DNA,hAT-Charlie,-160,647,60,49141082,49141845 -5 - chr10 49142940 49143082 chr10,49142940,49143082,-,MIRc,SINE,MIR,-36,232,83,49142904,49143164 -6 - chr10 49148607 49148634 chr10,49148262,49148634,+,MER74B,LTR,ERVL,226,612,-10,49148037,49148644 +2 + chr10 49981189 49981303 chr10,49981093,49981303,-,L2,LINE,L2,-2046,1373,1147,49979047,49982449 -2 - chr10 50334538 50334580 chr10,50334449,50334580,-,MamTip2,DNA,hAT-Tip100,-1,304,167,50334448,50334746 -1 - chr10 50334694 50334915 chr10,50334694,50334915,-,L2a,LINE,L2,-43,3383,3148,50334651,50338062 -6 - chr10 50334996 50335081 chr10,50334996,50335081,-,L2a,LINE,L2,-478,2941,2858,50334518,50337938 -6 - chr10 50335182 50335307 chr10,50335182,50335307,+,FRAM,SINE,Alu,42,161,-15,50335141,50335322 +6 + chr10 50335375 50335586 chr10,50335375,50335586,-,MIRb,SINE,MIR,-36,232,8,50335339,50335593 -6 - chr10 50393651 50393719 chr10,50393651,50393719,+,L3,LINE,CR1,3935,4002,-97,50389717,50393816 -6 + chr10 50394095 50394248 chr10,50394095,50394248,+,L4_A_Mam,LINE,RTE-X,4652,4821,-169,50389444,50394417 -6 + chr10 50473957 50473996 chr10,50473698,50473996,+,MLT1M,LTR,ERVL-MaLR,1,301,-371,50473698,50474367 +2 + chr10 50626654 50626805 chr10,50626654,50626934,-,AluJb,SINE,Alu,-18,294,6,50626636,50626939 -4 - chr10 50629087 50629178 chr10,50629087,50629418,-,MER2,DNA,TcMar-Tigger,-1,344,1,50629086,50629418 -4 - chr10 50631351 50631664 chr10,50631351,50631664,+,AluSx1,SINE,Alu,1,310,-2,50631351,50631666 +6 + chr10 50632130 50632263 chr10,50632130,50632263,+,MIRc,SINE,MIR,47,197,-71,50632084,50632334 +6 + chr10 50632860 50633078 chr10,50632860,50633078,-,MER20,DNA,hAT-Charlie,0,219,1,50632860,50633078 -6 - chr10 50633370 50633451 chr10,50633370,50633451,+,MER53,DNA,hAT,96,176,-17,50633275,50633468 +6 + chr10 50633460 50633485 chr10,50633460,50633485,+,(TGTT)n,Simple_repeat,Simple_repeat,1,25,0,50633460,50633485 +6 + chr10 50633930 50634115 chr10,50633930,50634115,+,MER5A,DNA,hAT-Charlie,4,189,0,50633927,50634115 +6 + chr10 50634126 50634263 chr10,50634126,50634263,-,MER5B,DNA,hAT-Charlie,-3,175,38,50634123,50634300 -6 - chr10 50634544 50634641 chr10,50634544,50634641,+,MIRb,SINE,MIR,112,211,-57,50634433,50634698 +6 + chr10 50635798 50636041 chr10,50635798,50636041,+,MIRb,SINE,MIR,17,260,-8,50635782,50636049 +6 + chr10 50636272 50636503 chr10,50636272,50636503,+,MamGypLTR1d,LTR,Gypsy,255,531,-282,50636018,50636785 +6 + chr10 50636667 50636698 chr10,50636667,50636698,+,(AGTGGT)n,Simple_repeat,Simple_repeat,1,31,0,50636667,50636698 +6 + chr10 50637012 50637271 chr10,50637012,50637271,-,Tigger10,DNA,TcMar-Tigger,-198,1646,1377,50636814,50638647 -6 - chr10 50637441 50637604 chr10,50637441,50637604,-,L2b,LINE,L2,0,3426,3225,50637441,50640828 -6 - chr10 50637613 50637706 chr10,50637613,50637706,-,MER5B,DNA,hAT-Charlie,-80,98,1,50637533,50637706 -6 - chr10 50637828 50639442 chr10,50637828,50639442,-,L1MD1,LINE,L1,0,6633,4995,50637828,50644436 -6 - chr10 50639442 50639739 chr10,50639442,50639739,-,AluJr4,SINE,Alu,-21,291,1,50639421,50639739 -6 - chr10 50639742 50640014 chr10,50639742,50640014,-,L1MD1,LINE,L1,-2115,4422,4141,50637627,50644154 -6 - chr10 50640012 50640315 chr10,50640012,50640315,-,L1MD1,LINE,L1,-6303,330,19,50633709,50640333 -6 - chr10 50640575 50640872 chr10,50640575,50640872,-,Tigger10,DNA,TcMar-Tigger,-496,1348,1037,50640079,50641908 -6 - chr10 50640940 50641251 chr10,50640940,50641251,+,AluSx,SINE,Alu,1,311,-1,50640940,50641252 +6 + chr10 50641289 50641362 chr10,50641289,50641362,-,Tigger10,DNA,TcMar-Tigger,-1051,793,709,50640238,50642070 -6 - chr10 50822882 50822984 chr10,50822882,50823011,+,L2b,LINE,L2,3249,3375,0,50819634,50823011 -2 + chr10 50823525 50823595 chr10,50823525,50823668,+,MER5A,DNA,hAT-Charlie,4,174,-15,50823522,50823683 -2 + chr10 50824496 50824525 chr10,50824496,50824619,+,L2c,LINE,L2,3107,3226,-161,50821390,50824780 -1 + chr10 50964270 50964687 chr10,50963861,50964687,+,LTR12D,LTR,ERV1,370,1254,0,50963492,50964687 +1 + chr10 50964743 50964835 chr10,50964743,50964835,-,L2c,LINE,L2,-2,3385,3293,50964741,50968127 -6 - chr10 50964858 50964893 chr10,50964858,50964893,+,(TTGTTA)n,Simple_repeat,Simple_repeat,1,35,0,50964858,50964893 +6 + chr10 50965043 50965164 chr10,50965043,50965164,-,MER112,DNA,hAT-Charlie,0,261,127,50965043,50965290 -6 - chr10 51062619 51062921 chr10,51062619,51062921,-,AluSp,SINE,Alu,-10,303,1,51062609,51062921 +6 - chr10 51245557 51245606 chr10,51245557,51245616,-,L2c,LINE,L2,-38,3349,3293,51245519,51248908 +2 - chr10 51302723 51302824 chr10,51302723,51302953,-,MIR,SINE,MIR,-5,257,64,51302718,51303016 -4 - chr10 52231115 52231397 chr10,52231115,52231420,+,AluJb,SINE,Alu,1,302,-10,52231115,52231430 -2 + chr10 52252041 52252102 chr10,52252041,52252102,+,(AATATA)n,Simple_repeat,Simple_repeat,1,64,0,52252041,52252102 -6 + chr10 52252203 52252244 chr10,52252203,52252244,+,(TATACA)n,Simple_repeat,Simple_repeat,1,43,0,52252203,52252244 -6 + chr10 52300803 52300838 chr10,52300662,52300988,+,MLT1I,LTR,ERVL-MaLR,69,411,0,52300594,52300988 -5 + chr10 52304265 52304302 chr10,52304265,52304559,+,L1ME3E,LINE,L1,5377,5681,-561,52298889,52305120 -2 + chr10 52450912 52451108 chr10,52450912,52451108,-,MIRc,SINE,MIR,-69,199,2,52450843,52451109 +6 - chr10 52454586 52454702 chr10,52454478,52454702,+,L2a,LINE,L2,844,1063,-1033,52453635,52455735 -4 + chr10 52454703 52454749 chr10,52454703,52455679,+,L2a,LINE,L2,2276,3421,-5,52452428,52455684 -1 + chr10 52455106 52455272 chr10,52454703,52455679,+,L2a,LINE,L2,2276,3421,-5,52452428,52455684 -1 + chr10 52470475 52470533 chr10,52470475,52470633,+,MIRc,SINE,MIR,6,166,-102,52470470,52470735 -1 + chr10 52556702 52557141 chr10,52556458,52557167,+,L1ME3Cz,LINE,L1,146,907,-90,52556313,52557257 -5 + chr10 52561006 52561025 chr10,52560888,52561025,-,MIRb,SINE,MIR,0,268,123,52560888,52561147 +4 - chr10 52973517 52973690 chr10,52973517,52974099,-,LTR27D,LTR,ERV1,-4,611,1,52973513,52974099 +2 - chr10 52974665 52974800 chr10,52974099,52974854,-,MER52-int,LTR,ERV1,0,7091,6312,52974099,52981165 +3 - chr10 54486286 54486316 chr10,54486286,54486444,+,MamRep1151,LTR?,LTR?,17,187,-522,54486270,54486966 +4 + chr10 54568565 54568675 chr10,54568501,54568744,-,L1ME2,LINE,L1,-2,6162,5902,54568499,54574645 -3 - chr10 54605692 54606215 chr10,54605553,54606215,-,L1M4,LINE,L1,-5221,1432,792,54600332,54607006 -2 - chr10 54654929 54655028 chr10,54654929,54655215,+,AluY,SINE,Alu,1,289,-22,54654929,54655237 +4 + chr10 54864674 54864796 chr10,54864507,54864997,-,MLT1F2,LTR,ERVL-MaLR,-11,549,10,54864496,54865006 +5 - chr10 55247755 55247888 chr10,55247636,55247913,+,AluJb,SINE,Alu,1,304,-8,55247636,55247921 -5 + chr10 55366092 55366213 chr10,55365907,55366224,-,L1MEf,LINE,L1,-6200,347,28,55359707,55366251 +3 - chr10 58304699 58304804 chr10,58304699,58304804,+,MER102b,DNA,hAT-Charlie,96,211,-130,58304604,58304934 +6 + chr10 58305567 58305621 chr10,58305567,58305835,-,AluSx1,SINE,Alu,-44,268,1,58305523,58305835 -5 - chr10 59282198 59282208 chr10,59282198,59282300,+,MIRb,SINE,MIR,164,266,-2,59282035,59282302 +4 + chr10 59589300 59589365 chr10,59589300,59589365,+,A-rich,Low_complexity,Low_complexity,1,67,0,59589300,59589365 +6 + chr10 59596325 59596421 chr10,59596150,59596443,-,AluJr,SINE,Alu,-21,291,1,59596129,59596443 -3 - chr10 59611131 59611248 chr10,59611115,59611291,+,MLT1A,LTR,ERVL-MaLR,184,372,-2,59610932,59611293 +5 + chr10 59738839 59739149 chr10,59738839,59739149,+,AluSx3,SINE,Alu,1,308,-3,59738839,59739152 -6 + chr10 59739263 59739276 chr10,59739263,59739276,+,(TATTTTG)n,Simple_repeat,Simple_repeat,1,13,0,59739263,59739276 -6 + chr10 59739276 59739629 chr10,59739276,59739629,-,MER2,DNA,TcMar-Tigger,0,345,1,59739276,59739629 +1 - chr10 59739629 59739652 chr10,59739629,59739652,+,(TATTTTG)n,Simple_repeat,Simple_repeat,7,30,0,59739623,59739652 -6 + chr10 59744184 59744244 chr10,59743660,59745125,+,SVA_B,Retroposon,SVA,22,1383,0,59743639,59745125 -1 + chr10 59744809 59744864 chr10,59743660,59745125,+,SVA_B,Retroposon,SVA,22,1383,0,59743639,59745125 -1 + chr10 59955511 59955904 chr10,59955511,59955904,-,Charlie1,DNA,hAT-Charlie,-683,2098,1673,59954828,59957576 +6 - chr10 59955967 59956117 chr10,59955967,59956117,-,L1MA9,LINE,L1,0,6312,6132,59955967,59962248 +6 - chr10 59956118 59956180 chr10,59956118,59956180,+,A-rich,Low_complexity,Low_complexity,1,62,0,59956118,59956180 -6 + chr10 59956188 59956494 chr10,59956188,59956494,-,AluSp,SINE,Alu,-13,300,1,59956175,59956494 +6 - chr10 59956517 59956807 chr10,59956517,59956807,-,Charlie1a,DNA,hAT-Charlie,-1155,300,12,59955362,59956818 +6 - chr10 59956809 59957015 chr10,59956809,59957015,-,Zaphod3,DNA,hAT-Tip100,-2413,210,1,59954396,59957015 +6 - chr10 59957019 59957146 chr10,59957019,59957146,-,L1M5,LINE,L1,-912,5234,5102,59956107,59962247 +6 - chr10 59957152 59957207 chr10,59957152,59957207,-,L1M5,LINE,L1,-2318,3828,3769,59954834,59960975 +6 - chr10 59957204 59957249 chr10,59957204,59957249,+,L1M5,LINE,L1,3874,3914,-2232,59953331,59959481 -6 + chr10 59957249 59957556 chr10,59957249,59957556,-,AluY,SINE,Alu,-5,306,1,59957244,59957556 +6 - chr10 59957556 59957628 chr10,59957556,59957628,+,L1M5,LINE,L1,3915,3987,-2159,59953642,59959787 -6 + chr10 59957626 59957895 chr10,59957626,59957895,-,L1M5,LINE,L1,-2488,3658,3386,59955138,59961280 +6 - chr10 59957900 59958146 chr10,59957900,59958146,-,L1MB7,LINE,L1,-9,6175,5927,59957891,59964072 +6 - chr10 59958173 59958247 chr10,59958173,59958247,-,Charlie1,DNA,hAT-Charlie,-1065,1716,1631,59957108,59959877 +5 - chr10 59958247 59958347 chr10,59958247,59958347,-,MLT1F1,LTR,ERVL-MaLR,-468,101,1,59957779,59958347 +5 - chr10 59959154 59959196 chr10,59959154,59959196,-,MLT1K,LTR,ERVL-MaLR,-389,206,165,59958765,59959360 +6 - chr10 59959270 59959353 chr10,59959270,59959353,+,L2b,LINE,L2,3296,3375,0,59955975,59959353 -6 + chr10 59960851 59960913 chr10,59960613,59961584,-,L1MA6,LINE,L1,-6,6294,5259,59960607,59966842 +1 - chr10 60734342 60734428 chr10,60734208,60734681,+,MER113,DNA,hAT-Charlie,4,518,-3,60734205,60734684 +1 + chr10 60741482 60741565 chr10,60741471,60741565,+,MER91B,DNA,hAT-Tip100,102,189,-1,60741370,60741566 +2 + chr10 60741579 60741705 chr10,60741579,60741705,+,L2b,LINE,L2,3251,3375,0,60738329,60741705 +6 + chr10 61481840 61481928 chr10,61481530,61481928,+,LTR16,LTR,ERVL,6,535,-3,61481525,61481931 +2 + chr10 61685034 61685169 chr10,61685034,61685169,-,MamRTE1,LINE,RTE-BovB,-3556,256,119,61681478,61685287 +6 - chr10 61685170 61685269 chr10,61685170,61685269,+,Charlie8,DNA,hAT-Charlie,95,209,-2219,61685076,61687488 -6 + chr10 61781745 61781839 chr10,61781676,61781881,+,MIRc,SINE,MIR,14,229,-39,61781663,61781920 -5 + chr10 61820134 61820155 chr10,61820073,61820236,+,MIRb,SINE,MIR,36,258,-4,61820038,61820240 -3 + chr10 62303503 62303696 chr10,62303503,62303696,+,MIRc,SINE,MIR,7,233,-35,62303497,62303731 +6 + chr10 62303845 62303926 chr10,62303845,62303926,-,MER47C,DNA,TcMar-Tigger,-13,84,4,62303832,62303929 -6 - chr10 62793562 62793750 chr10,62793210,62793750,-,L1MC1,LINE,L1,0,6333,5733,62793210,62799482 +5 - chr10 62794295 62794408 chr10,62794295,62794621,+,AluJb,SINE,Alu,3,301,-11,62794293,62794632 -2 + chr10 63123938 63124182 chr10,63123792,63124340,-,MER72,LTR,ERV1,-45,677,95,63123747,63124434 +5 - chr10 63125505 63125537 chr10,63125505,63125919,+,MER57B2,LTR,ERV1,8,401,-2,63125498,63125921 -1 + chr10 63466139 63466162 chr10,63466139,63466162,+,(GGC)n,Simple_repeat,Simple_repeat,1,23,0,63466139,63466162 +6 + chr10 63664664 63664772 chr10,63664644,63665398,-,LTR17,LTR,ERV1,-13,767,1,63664631,63665398 -1 - chr10 63684922 63684940 chr10,63684655,63684940,+,HAL1,LINE,L1,339,621,-1886,63684317,63686826 +2 + chr10 63684950 63685096 chr10,63684950,63685096,+,HAL1,LINE,L1,1725,1877,-630,63683226,63685726 +6 + chr10 63990269 63990568 chr10,63989576,63990589,+,MER50-int,LTR,ERV1,6182,7196,-9,63983395,63990598 +5 + chr10 64901136 64901211 chr10,64901074,64901211,+,HAL1,LINE,L1,2261,2386,-121,64898814,64901332 -5 + chr10 64901564 64901866 chr10,64901564,64901866,+,MER110-int,LTR,ERV1,4353,4647,0,64897212,64901866 -6 + chr10 64902180 64902349 chr10,64902180,64902349,+,MER110,LTR,ERV1,306,484,-7,64901875,64902356 -6 + chr10 64902445 64902740 chr10,64902445,64902740,-,AluY,SINE,Alu,-7,304,1,64902438,64902740 +6 - chr10 64902982 64903084 chr10,64902982,64903084,+,L2a,LINE,L2,3313,3425,-1,64899670,64903085 -6 + chr10 64903186 64903330 chr10,64903186,64903330,+,AluSg7,SINE,Alu,1,149,-160,64903186,64903490 -6 + chr10 64924237 64924289 chr10,64924112,64924289,-,L1M5,LINE,L1,-1942,4204,4026,64922170,64928314 +4 - chr10 64924285 64924518 chr10,64924285,64930261,+,L1PA3,LINE,L1,169,6155,0,64924117,64930261 -1 + chr10 65313785 65313828 chr10,65313548,65314102,+,LTR73,LTR,ERV1,1,558,-14,65313548,65314116 +1 + chr10 65314003 65314094 chr10,65313548,65314102,+,LTR73,LTR,ERV1,1,558,-14,65313548,65314116 +1 + chr10 65314800 65314824 chr10,65314706,65314824,+,MIRb,SINE,MIR,12,147,-121,65314695,65314945 +2 + chr10 65570386 65570726 chr10,65570386,65570726,+,MER61A,LTR,ERV1,1,337,-4,65570386,65570730 +1 + chr10 65570726 65570759 chr10,65570726,65571292,+,MER61-int,LTR,ERV1,1,549,-4668,65570726,65575960 +1 + chr10 65570875 65571292 chr10,65570726,65571292,+,MER61-int,LTR,ERV1,1,549,-4668,65570726,65575960 +1 + chr10 65571436 65571579 chr10,65571436,65572559,+,MER61-int,LTR,ERV1,1760,2906,-2311,65569677,65574870 +4 + chr10 65572935 65573056 chr10,65572875,65573112,+,MER61-int,LTR,ERV1,2907,3146,-2071,65569969,65575183 +3 + chr10 65579883 65579948 chr10,65579633,65580303,-,L2c,LINE,L2,-459,2960,2346,65579174,65582648 -3 - chr10 65581612 65581673 chr10,65581139,65582019,+,LTR28C,LTR,ERV1,3,1129,0,65581137,65582019 +3 + chr10 65628049 65628740 chr10,65628049,65628740,+,LTR8,LTR,ERV1,1,691,0,65628049,65628740 +6 + chr10 65628892 65628903 chr10,65628892,65628976,+,MER63A,DNA,hAT-Blackjack,1,84,-126,65628892,65629102 +5 + chr10 65632130 65632246 chr10,65632130,65632246,+,L1M3c,LINE,L1,1166,1281,-4860,65630965,65637106 +6 + chr10 65632407 65632828 chr10,65632407,65632871,+,L1MA6,LINE,L1,1225,1699,-5797,65631183,65638668 +5 + chr10 65637870 65638413 chr10,65637518,65638456,+,L1MA6,LINE,L1,6776,7719,0,65630743,65638456 +5 + chr10 65660130 65660169 chr10,65660130,65660169,+,X7A_LINE,LINE,CR1,30,67,-200,65660101,65660369 +6 + chr10 65670630 65670871 chr10,65670630,65670955,+,THE1B,LTR,ERVL-MaLR,1,364,0,65670630,65670955 +5 + chr10 65672312 65672362 chr10,65672299,65672362,-,MER5A,DNA,hAT-Charlie,-85,104,43,65672214,65672404 -2 - chr10 65680960 65681237 chr10,65680938,65681237,-,AluY,SINE,Alu,-12,299,1,65680926,65681237 -2 - chr10 65682190 65682243 chr10,65682108,65682243,-,L2c,LINE,L2,-556,2863,2726,65681552,65684968 -2 - chr10 65682257 65682612 chr10,65682257,65682612,-,L2c,LINE,L2,-773,2646,2263,65681484,65684874 -6 - chr10 65691730 65692070 chr10,65691730,65692070,+,LTR48,LTR,ERV1,1,366,-421,65691730,65692491 +6 + chr10 65698103 65698309 chr10,65697998,65698309,+,ERVL-int,LTR,ERVL,5433,5756,-1,65692566,65698310 +2 + chr10 65698309 65698394 chr10,65698309,65698394,+,MLT2F,LTR,ERVL,1,87,-576,65698309,65698970 +6 + chr10 65698565 65698716 chr10,65698565,65698756,+,LTR33,LTR,ERVL,10,199,-316,65698556,65699072 +5 + chr10 65736897 65736999 chr10,65736714,65737070,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,65736714,65737070 +3 + chr10 65766478 65766541 chr10,65766469,65766715,+,MLT1I,LTR,ERVL-MaLR,151,409,-2,65766319,65766717 +5 + chr10 67052654 67052684 chr10,67052654,67052684,+,GA-rich,Low_complexity,Low_complexity,1,30,0,67052654,67052684 +6 + chr10 67850276 67850577 chr10,67850276,67850577,+,AluY,SINE,Alu,1,299,-12,67850276,67850589 +6 + chr10 67850643 67850743 chr10,67850643,67850743,+,L1MC1,LINE,L1,6204,6314,-19,67844440,67850762 +6 + chr10 68235418 68235433 chr10,68235418,68235663,+,AluJo,SINE,Alu,60,304,-8,68235359,68235671 -1 + chr10 68698902 68699203 chr10,68698902,68699203,+,AluSg7,SINE,Alu,1,300,-9,68698902,68699212 +6 + chr10 68699277 68699303 chr10,68699277,68699303,+,(TTTGC)n,Simple_repeat,Simple_repeat,1,27,0,68699277,68699303 +6 + chr10 68699496 68699518 chr10,68699496,68699518,+,(CA)n,Simple_repeat,Simple_repeat,1,22,0,68699496,68699518 +6 + chr10 69215333 69215450 chr10,69215138,69215450,-,AluSx1,SINE,Alu,-6,306,1,69215132,69215450 +5 - chr10 69215511 69215716 chr10,69215511,69215716,-,HAL1,LINE,L1,-2216,291,89,69213295,69215804 +6 - chr10 69216668 69216772 chr10,69216668,69216803,+,MIR,SINE,MIR,2,167,-101,69216667,69216904 -2 + chr10 69575807 69575823 chr10,69575788,69575823,+,(TCC)n,Simple_repeat,Simple_repeat,1,35,0,69575788,69575823 +1 + chr10 69575823 69575896 chr10,69575823,69575896,+,(CTT)n,Simple_repeat,Simple_repeat,1,72,0,69575823,69575896 +6 + chr10 69690698 69690729 chr10,69690698,69690806,-,MIRc,SINE,MIR,-70,198,77,69690628,69690882 -4 - chr10 69691070 69691145 chr10,69690806,69691226,+,MSTB,LTR,ERVL-MaLR,1,425,-1,69690806,69691227 +3 + chr10 69994626 69994854 chr10,69994575,69994941,+,L1ME3G,LINE,L1,151,542,-382,69994425,69995323 -5 + chr10 70434829 70434965 chr10,70434773,70434965,-,MIRb,SINE,MIR,-48,220,24,70434725,70434988 -1 - chr10 70434967 70435085 chr10,70434967,70435085,-,MIR3,SINE,MIR,-11,197,79,70434956,70435163 -6 - chr10 70435121 70435201 chr10,70435121,70435201,+,L2b,LINE,L2,3292,3425,-1,70431830,70435202 +6 + chr10 70436080 70436265 chr10,70436080,70436265,-,MIRb,SINE,MIR,-57,211,28,70436023,70436292 -6 - chr10 70436377 70436556 chr10,70436377,70436576,+,AluSp,SINE,Alu,87,301,-12,70436291,70436588 +5 + chr10 70930504 70930606 chr10,70930504,70930606,-,MIR,SINE,MIR,-31,231,119,70930473,70930724 -6 - chr10 70930748 70930881 chr10,70930748,70930881,+,MIRb,SINE,MIR,110,243,-25,70930639,70930906 +6 + chr10 70931048 70931109 chr10,70931048,70931109,+,MIRc,SINE,MIR,84,148,-120,70930965,70931229 +6 + chr10 70931722 70931787 chr10,70931722,70931787,+,MIR3,SINE,MIR,90,154,-54,70931633,70931841 +6 + chr10 70939053 70939180 chr10,70939026,70939688,+,L3,LINE,CR1,3204,3992,-107,70935823,70939795 +1 + chr10 70943784 70943933 chr10,70943709,70943933,-,MIRc,SINE,MIR,-10,258,26,70943699,70943958 -2 - chr10 70954325 70954391 chr10,70954325,70954391,+,LTR28C,LTR,ERV1,733,799,-330,70953593,70954721 +6 + chr10 70955564 70955641 chr10,70955551,70955850,+,MLT1J2,LTR,ERVL-MaLR,68,402,-46,70955484,70955896 +5 + chr10 71364946 71365260 chr10,71364946,71365260,+,AluSq2,SINE,Alu,1,312,-1,71364946,71365261 +6 + chr10 71365974 71366215 chr10,71365974,71366215,-,AluJb,SINE,Alu,0,312,77,71365974,71366291 -6 - chr10 71366231 71366374 chr10,71366231,71366417,+,MLT-int,LTR,ERVL-MaLR,362,550,-1185,71365870,71367602 +5 + chr10 71508153 71508230 chr10,71508033,71508230,+,MIRb,SINE,MIR,53,254,-14,71507981,71508244 -5 + chr10 71878851 71878909 chr10,71878851,71878909,-,L2c,LINE,L2,-35,3352,3295,71878816,71882203 -6 - chr10 71879072 71879107 chr10,71879072,71879281,-,L1MB3,LINE,L1,-1,6182,5980,71879071,71885260 -5 - chr10 72053299 72053436 chr10,72053299,72053436,+,L2b,LINE,L2,3242,3355,-20,72050058,72053456 -6 + chr10 72730557 72730588 chr10,72730297,72730588,-,AluSx,SINE,Alu,-1,311,1,72730296,72730588 -1 - chr10 72730952 72731087 chr10,72730952,72731087,-,AluSz6,SINE,Alu,-177,135,1,72730775,72731087 -6 - chr10 72731120 72731175 chr10,72731120,72731226,-,AluJr,SINE,Alu,-194,118,2,72730926,72731227 -5 - chr10 72756891 72757016 chr10,72756891,72757027,+,FLAM_A,SINE,Alu,1,135,-7,72756891,72757034 +5 + chr10 72766936 72767052 chr10,72766936,72767071,-,L1ME1,LINE,L1,-1,6178,6012,72766935,72773082 -5 - chr10 73098044 73098286 chr10,73098018,73098286,+,Charlie1b,DNA,hAT-Charlie,53,332,-191,73097966,73098477 -5 + chr10 73098286 73098411 chr10,73098286,73098411,+,FLAM_C,SINE,Alu,1,127,-16,73098286,73098427 -6 + chr10 73098411 73098586 chr10,73098411,73098586,+,Charlie1b,DNA,hAT-Charlie,333,506,-17,73098079,73098603 -6 + chr10 73098588 73098886 chr10,73098588,73098886,+,AluSc,SINE,Alu,1,296,-13,73098588,73098899 -6 + chr10 73098987 73099578 chr10,73098987,73099578,+,Arthur1B,DNA,hAT-Tip100,3,627,-598,73098985,73100176 -6 + chr10 73099586 73099834 chr10,73099586,73099879,-,AluJo,SINE,Alu,-19,293,1,73099567,73099879 +2 - chr10 73100084 73100297 chr10,73100013,73100297,+,AluJr,SINE,Alu,2,294,-18,73100012,73100315 -4 + chr10 73100297 73100373 chr10,73100297,73100373,+,Arthur1,DNA,hAT-Tip100,3464,3531,-416,73096834,73100789 -6 + chr10 73100437 73100554 chr10,73100437,73100554,-,L2c,LINE,L2,-4,3422,3305,73100433,73103858 +6 - chr10 73100593 73100656 chr10,73100593,73100656,-,L2a,LINE,L2,0,3426,3357,73100593,73104012 +6 - chr10 73100723 73101009 chr10,73100723,73101009,+,AluSx,SINE,Alu,2,298,-14,73100722,73101023 -6 + chr10 73101095 73101297 chr10,73101095,73101407,+,AluSx,SINE,Alu,12,303,-9,73101084,73101416 -1 + chr10 73124773 73124890 chr10,73124773,73124890,+,L1ME3E,LINE,L1,6075,6197,-45,73118699,73124935 -6 + chr10 73248964 73249212 chr10,73248950,73249212,-,AluJr,SINE,Alu,-44,268,6,73248906,73249217 -2 - chr10 73252890 73253095 chr10,73252890,73253107,-,L2b,LINE,L2,-59,3316,3089,73252831,73256195 -1 - chr10 73254229 73254330 chr10,73254229,73254330,+,L1ME3A,LINE,L1,6063,6166,-7,73248167,73254337 +6 + chr10 73274989 73275278 chr10,73274989,73275278,-,AluSx3,SINE,Alu,-24,287,1,73274965,73275278 -6 - chr10 73276110 73276247 chr10,73276110,73276247,-,FLAM_C,SINE,Alu,-10,133,1,73276100,73276247 -6 - chr10 73498298 73498541 chr10,73498267,73498573,-,AluSc,SINE,Alu,-3,306,1,73498264,73498573 -1 - chr10 73498556 73498573 chr10,73498267,73498573,-,AluSc,SINE,Alu,-3,306,1,73498264,73498573 -1 - chr10 73499595 73499708 chr10,73499591,73499708,-,AluJo,SINE,Alu,-194,118,2,73499397,73499709 -5 - chr10 73499817 73499897 chr10,73499817,73499897,-,MER20,DNA,hAT-Charlie,-9,210,137,73499808,73500033 -5 - chr10 73505588 73505890 chr10,73505588,73505890,+,AluY,SINE,Alu,1,302,-9,73505588,73505899 +6 + chr10 73506084 73506158 chr10,73506084,73506158,-,MIR3,SINE,MIR,-21,187,112,73506063,73506269 -6 - chr10 73506641 73506739 chr10,73506641,73506739,+,MER5A,DNA,hAT-Charlie,38,139,-50,73506604,73506789 +6 + chr10 73506776 73507113 chr10,73506776,73507113,+,L1ME3A,LINE,L1,5532,5884,-289,73501245,73507402 +6 + chr10 73513210 73513474 chr10,73513197,73513478,+,AluSz,SINE,Alu,16,298,-14,73513182,73513492 +5 + chr10 73515828 73515925 chr10,73515778,73516081,-,AluSc8,SINE,Alu,-8,303,1,73515770,73516081 -3 - chr10 73518744 73518864 chr10,73518718,73519022,-,AluJb,SINE,Alu,-8,304,2,73518710,73519023 -3 - chr10 73519845 73519892 chr10,73519845,73519892,+,(GCT)n,Simple_repeat,Simple_repeat,1,49,0,73519845,73519892 +6 + chr10 73519994 73520070 chr10,73519994,73520073,+,A-rich,Low_complexity,Low_complexity,1,85,0,73519994,73520073 +5 + chr10 73630556 73630707 chr10,73630404,73630707,+,AluJb,SINE,Alu,1,297,-15,73630404,73630722 +1 + chr10 73667728 73667757 chr10,73667728,73667757,+,(GAG)n,Simple_repeat,Simple_repeat,1,29,0,73667728,73667757 +6 + chr10 73699151 73699309 chr10,73699097,73699309,-,THE1D,LTR,ERVL-MaLR,-6,375,160,73699091,73699468 +5 - chr10 73699309 73699588 chr10,73699309,73699611,+,AluSx,SINE,Alu,2,303,-9,73699308,73699620 -2 + chr10 73704963 73705078 chr10,73704963,73705174,+,L2,LINE,L2,1147,1373,-2046,73703817,73707220 -2 + chr10 73718050 73718165 chr10,73718050,73718373,+,AluJo,SINE,Alu,1,311,-1,73718050,73718374 -2 + chr10 73742995 73743582 chr10,73742859,73743582,-,LTR8,LTR,ERV1,0,691,1,73742859,73743582 +5 - chr10 73743582 73743617 chr10,73743582,73743617,+,L2a,LINE,L2,3392,3426,0,73740191,73743617 -6 + chr10 73743802 73743897 chr10,73743802,73743897,-,MIR,SINE,MIR,-2,266,141,73743800,73744037 +6 - chr10 73814651 73814737 chr10,73814651,73814879,-,MIRb,SINE,MIR,-26,242,3,73814625,73814881 -5 - chr10 73846350 73846566 chr10,73846350,73846617,+,L2c,LINE,L2,3102,3386,-1,73843249,73846618 +5 + chr10 74005216 74005251 chr10,74005216,74005251,+,(AT)n,Simple_repeat,Simple_repeat,1,35,0,74005216,74005251 +6 + chr10 74005251 74005280 chr10,74005251,74005555,-,AluSx,SINE,Alu,-9,303,1,74005242,74005555 -4 - chr10 74027618 74027668 chr10,74027394,74027668,+,AluSx1,SINE,Alu,17,307,-5,74027378,74027673 +2 + chr10 74027801 74027853 chr10,74027801,74027853,+,(TTTCA)n,Simple_repeat,Simple_repeat,1,54,0,74027801,74027853 +6 + chr10 74506132 74506593 chr10,74505954,74507011,-,Tigger2,DNA,TcMar-Tigger,-1609,1109,1,74504345,74507011 +5 - chr10 74509353 74509490 chr10,74509196,74509490,-,AluSc,SINE,Alu,-15,294,1,74509181,74509490 +5 - chr10 74509490 74509509 chr10,74509490,74510718,-,L1MA5A,LINE,L1,-46,7670,6423,74509444,74517140 +2 - chr10 74516723 74516819 chr10,74516540,74516819,-,AluSx1,SINE,Alu,-29,283,5,74516511,74516823 +4 - chr10 74516829 74516857 chr10,74516829,74516857,-,L1M5,LINE,L1,-372,5822,5793,74516457,74522649 +6 - chr10 74516857 74516901 chr10,74516857,74517154,-,THE1A,LTR,ERVL-MaLR,0,355,1,74516857,74517154 +2 - chr10 74529293 74529355 chr10,74528479,74529532,+,L1MB4,LINE,L1,5100,6174,-6,74523380,74529538 -1 + chr10 74530531 74530553 chr10,74530531,74530643,+,L1ME1,LINE,L1,149,258,-6142,74530383,74536785 -1 + chr10 74821624 74821682 chr10,74821624,74821682,-,L2c,LINE,L2,0,3387,3333,74821624,74825014 +6 - chr10 75023723 75023745 chr10,75023723,75023850,+,AluJo,SINE,Alu,1,127,-185,75023723,75024035 -2 + chr10 75024143 75024251 chr10,75024120,75024251,+,AluJb,SINE,Alu,1,131,-181,75024120,75024432 -1 + chr10 75269819 75269945 chr10,75269766,75269945,-,MLT1J,LTR,ERVL-MaLR,-328,184,15,75269438,75269959 -1 - chr10 75273342 75273411 chr10,75273342,75273502,+,L2c,LINE,L2,3020,3190,-197,75270323,75273699 +4 + chr10 75279726 75279911 chr10,75279678,75280029,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,75279678,75280029 +5 - chr10 75280270 75280326 chr10,75280164,75280326,+,L1M5,LINE,L1,5590,5747,-447,75274575,75280773 -4 + chr10 75298952 75299074 chr10,75298933,75299230,-,AluSq2,SINE,Alu,-15,298,1,75298918,75299230 -3 - chr10 75338384 75338423 chr10,75338384,75338514,+,MIRb,SINE,MIR,107,259,-9,75338278,75338523 +4 + chr10 75350352 75350410 chr10,75350285,75350410,-,MER94,DNA,hAT-Blackjack,0,134,4,75350285,75350413 -2 - chr10 75350415 75350470 chr10,75350415,75350549,-,L1ME3G,LINE,L1,-76,848,688,75350339,75351236 -4 - chr10 75361111 75361306 chr10,75361111,75361306,+,MIRb,SINE,MIR,29,253,-15,75361083,75361321 +6 + chr10 75373381 75373456 chr10,75373091,75373456,+,LTR16,LTR,ERVL,36,427,-11,75373056,75373467 +2 + chr10 75401519 75401535 chr10,75401500,75401535,+,(GGAGCA)n,Simple_repeat,Simple_repeat,1,35,0,75401500,75401535 +1 + chr10 75401682 75401747 chr10,75401682,75401747,+,(GCTGC)n,Simple_repeat,Simple_repeat,1,65,0,75401682,75401747 +6 + chr10 75401879 75401904 chr10,75401879,75401904,+,(CCG)n,Simple_repeat,Simple_repeat,1,26,0,75401879,75401904 +6 + chr10 75403951 75404007 chr10,75403951,75404007,+,(CTCCC)n,Simple_repeat,Simple_repeat,1,58,0,75403951,75404007 +6 + chr10 75410130 75410184 chr10,75410092,75410260,-,MIR,SINE,MIR,-3,259,89,75410089,75410348 -3 - chr10 75410517 75410995 chr10,75410517,75410995,+,L2b,LINE,L2,2759,3291,-84,75407759,75411079 +6 + chr10 75411437 75411570 chr10,75411437,75411570,+,L2,LINE,L2,2718,2863,-556,75408720,75412126 +6 + chr10 75431535 75431564 chr10,75431535,75431564,+,(GGC)n,Simple_repeat,Simple_repeat,1,30,0,75431535,75431564 -6 + chr10 75642837 75643090 chr10,75642837,75643090,-,MLT1G3,LTR,ERVL-MaLR,0,595,225,75642837,75643314 -6 - chr10 75742740 75742883 chr10,75742731,75742895,+,MER5B,DNA,hAT-Charlie,20,177,-1,75742712,75742896 +1 + chr10 76270206 76270525 chr10,76270040,76270525,-,L2a,LINE,L2,-16,3410,2907,76270024,76273431 -1 - chr10 76437408 76437436 chr10,76437259,76437436,-,MIR3,SINE,MIR,-16,214,24,76437243,76437459 +5 - chr10 76888130 76888281 chr10,76888130,76888318,+,MER5A,DNA,hAT-Charlie,1,189,0,76888130,76888318 +4 + chr10 76902651 76902894 chr10,76902651,76902894,+,MIR,SINE,MIR,7,260,-8,76902645,76902902 +6 + chr10 76904009 76904044 chr10,76904009,76904044,+,(ATATAT)n,Simple_repeat,Simple_repeat,1,35,0,76904009,76904044 +6 + chr10 76904896 76905117 chr10,76904896,76905117,-,MER102a,DNA,hAT-Charlie,-28,302,59,76904868,76905175 -6 - chr10 76929964 76930237 chr10,76929811,76931320,+,L1MA9,LINE,L1,4813,6308,-4,76924999,76931324 +1 + chr10 76939110 76939419 chr10,76939110,76939419,-,AluSc8,SINE,Alu,0,311,1,76939110,76939419 -1 - chr10 76949452 76949463 chr10,76949452,76949488,-,L2a,LINE,L2,-10,3416,3382,76949442,76952869 -5 - chr10 76979629 76979691 chr10,76979629,76979691,+,MIRc,SINE,MIR,207,268,0,76979423,76979691 +6 + chr10 76980557 76980624 chr10,76980557,76980687,+,MER102c,DNA,hAT-Charlie,66,201,-130,76980492,76980817 +5 + chr10 77148292 77148321 chr10,77148150,77148514,-,L4_C_Mam,LINE,RTE-X,-200,4938,4562,77147950,77153075 -1 - chr10 77313941 77314021 chr10,77313921,77314021,+,MER112,DNA,hAT-Charlie,3,109,-152,77313919,77314173 +1 + chr10 77314021 77314055 chr10,77314021,77314055,+,(TGGAG)n,Simple_repeat,Simple_repeat,1,35,0,77314021,77314055 +6 + chr10 77355169 77355228 chr10,77354948,77355304,+,THE1A,LTR,ERVL-MaLR,1,355,0,77354948,77355304 +3 + chr10 77372873 77372947 chr10,77372873,77373289,+,LTR37B,LTR,ERV1,51,468,0,77372823,77373289 +4 + chr10 77793053 77793176 chr10,77793053,77793257,+,MER5C,DNA,hAT-Charlie,62,268,-45,77792992,77793302 +5 + chr10 77867923 77868206 chr10,77867830,77868206,+,MLT1C,LTR,ERVL-MaLR,82,463,-4,77867749,77868210 +2 + chr10 77868228 77868406 chr10,77868228,77868406,+,L2b,LINE,L2,3207,3385,-2,77865022,77868408 +6 + chr10 77868407 77868533 chr10,77868407,77868533,+,MIR3,SINE,MIR,68,184,-24,77868340,77868557 +6 + chr10 77929589 77929824 chr10,77929420,77929889,+,MLT1C,LTR,ERVL-MaLR,1,461,-6,77929420,77929895 +5 + chr10 78238255 78238304 chr10,78238019,78238387,+,THE1B,LTR,ERVL-MaLR,1,364,0,78238019,78238387 +1 + chr10 78250738 78250928 chr10,78250738,78250928,+,MIR,SINE,MIR,17,214,-48,78250722,78250976 +6 + chr10 78251547 78251728 chr10,78251547,78251728,-,MIRb,SINE,MIR,-64,204,23,78251483,78251750 -6 - chr10 78251736 78252096 chr10,78251736,78252096,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,78251736,78252096 -6 - chr10 78279399 78279494 chr10,78279218,78279516,-,AluJb,SINE,Alu,-20,292,1,78279198,78279516 -3 - chr10 78301410 78301442 chr10,78301410,78301442,+,A-rich,Low_complexity,Low_complexity,1,34,0,78301410,78301442 +6 + chr10 78301749 78301957 chr10,78301749,78301957,-,MIRb,SINE,MIR,-27,241,37,78301722,78301993 -6 - chr10 78330472 78330595 chr10,78330472,78330824,-,L1ME4a,LINE,L1,0,6124,5738,78330472,78336561 -5 - chr10 78353092 78353155 chr10,78352963,78353155,-,MIR,SINE,MIR,0,262,63,78352963,78353217 -2 - chr10 78355933 78356100 chr10,78355813,78356148,+,MLT1A0,LTR,ERVL-MaLR,2,365,0,78355812,78356148 +5 + chr10 78406544 78406615 chr10,78406475,78406615,-,L2b,LINE,L2,0,3426,3248,78406475,78409862 -1 - chr10 78525330 78525349 chr10,78525149,78525349,+,MER58A,DNA,hAT-Charlie,22,224,0,78525128,78525349 +2 + chr10 78525397 78525484 chr10,78525397,78525669,+,Charlie18a,DNA,hAT-Charlie,63,341,-1,78525335,78525670 +4 + chr10 78550638 78550742 chr10,78550530,78550742,-,MIR,SINE,MIR,-2,260,28,78550528,78550769 -2 - chr10 78551151 78551193 chr10,78551151,78551193,+,(ATTC)n,Simple_repeat,Simple_repeat,1,42,0,78551151,78551193 +6 + chr10 78674765 78675109 chr10,78674765,78675147,+,Charlie29a,DNA,hAT-Charlie,289,691,-28,78674477,78675175 +5 + chr10 78696062 78696141 chr10,78695470,78696141,-,L1MC4,LINE,L1,-124,7918,7269,78695346,78703409 +5 - chr10 78696154 78696250 chr10,78696154,78696250,-,L2b,LINE,L2,-24,3351,3258,78696130,78699507 +6 - chr10 78696265 78696349 chr10,78696265,78696352,-,MIRb,SINE,MIR,-10,252,168,78696255,78696519 +2 - chr10 78943328 78943716 chr10,78943284,78943716,-,MLT1D,LTR,ERVL-MaLR,-3,502,1,78943281,78943716 +5 - chr10 78945912 78945989 chr10,78945718,78946148,+,LTR16A1,LTR,ERVL,1,456,0,78945718,78946148 -3 + chr10 78960505 78960533 chr10,78960344,78960533,+,MIR,SINE,MIR,75,260,-2,78960270,78960535 -4 + chr10 78961461 78962142 chr10,78961461,78962142,-,L2a,LINE,L2,0,3426,2605,78961461,78964746 +6 - chr10 79000484 79000666 chr10,79000469,79000666,-,MIRc,SINE,MIR,-52,216,20,79000417,79000685 +5 - chr10 79001213 79001313 chr10,79001213,79001313,-,MamRTE1,LINE,RTE-BovB,-1642,2170,2056,78999571,79003368 +6 - chr10 79001333 79001447 chr10,79001333,79001447,+,L2c,LINE,L2,3036,3165,-261,78998298,79001708 -6 + chr10 79001658 79001687 chr10,79001658,79001687,+,(GGCGGT)n,Simple_repeat,Simple_repeat,1,32,0,79001658,79001687 -6 + chr10 79001986 79002236 chr10,79001986,79002298,+,AluJb,SINE,Alu,20,312,0,79001967,79002298 -2 + chr10 79044148 79044323 chr10,79044143,79044323,-,L2c,LINE,L2,-177,3198,3023,79043966,79047345 +5 - chr10 79048774 79048813 chr10,79048751,79048813,+,MIR3,SINE,MIR,61,125,-83,79048691,79048896 -4 + chr10 79050282 79050324 chr10,79050234,79050324,+,MIRc,SINE,MIR,61,154,-114,79050174,79050438 -4 + chr10 79050325 79050417 chr10,79050325,79051100,-,MER21B,LTR,ERVL,-83,785,1,79050242,79051100 +2 - chr10 79065747 79065769 chr10,79065613,79065769,+,MIR,SINE,MIR,88,249,-13,79065526,79065782 -4 + chr10 79409023 79409104 chr10,79408925,79409104,+,MER117,DNA,hAT-Charlie,1,197,0,79408925,79409104 +2 + chr10 79409104 79409150 chr10,79409104,79409150,+,MIR3,SINE,MIR,155,197,-11,79408950,79409161 +6 + chr10 79504073 79504142 chr10,79504042,79504142,-,LTR16B1,LTR,ERVL,-12,468,362,79504030,79504503 +5 - chr10 79628757 79628924 chr10,79628751,79628924,-,L2a,LINE,L2,0,3426,3258,79628751,79632181 +5 - chr10 79632074 79632188 chr10,79632074,79632378,+,AluY,SINE,Alu,2,296,-15,79632073,79632393 -1 + chr10 79663192 79663217 chr10,79662910,79663217,-,AluY,SINE,Alu,-16,295,1,79662894,79663217 -5 - chr10 79663088 79663217 chr10,79662910,79663217,-,AluY,SINE,Alu,-16,295,1,79662894,79663217 +5 - chr10 79663278 79663422 chr10,79663278,79663422,-,MLT1A,LTR,ERVL-MaLR,-24,586,446,79663254,79663867 -6 - chr10 79664110 79664481 chr10,79664110,79664481,-,MLT1A,LTR,ERVL-MaLR,-6,368,1,79664104,79664481 -6 - chr10 79664715 79664786 chr10,79664715,79665088,-,MLT1C,LTR,ERVL-MaLR,-5,462,54,79664710,79665141 -5 - chr10 79676468 79676598 chr10,79675811,79676598,-,L1ME1,LINE,L1,-388,5791,4982,79675423,79681579 -2 - chr10 79676704 79676908 chr10,79676704,79676908,+,MLT1J,LTR,ERVL-MaLR,24,239,-273,79676681,79677181 +6 + chr10 79677099 79677325 chr10,79677099,79677325,-,L1PA6,LINE,L1,-7,6147,5920,79677092,79683244 -6 - chr10 79677424 79677465 chr10,79677424,79677465,+,(AAC)n,Simple_repeat,Simple_repeat,1,44,0,79677424,79677465 +6 + chr10 79681973 79682697 chr10,79681794,79682697,+,L1M5,LINE,L1,4398,5304,-842,79677397,79683539 -5 + chr10 79682698 79682972 chr10,79682698,79682972,+,AluJb,SINE,Alu,1,291,-21,79682698,79682993 -6 + chr10 79691847 79691955 chr10,79691847,79691955,-,MLT1H,LTR,ERVL-MaLR,-26,523,410,79691821,79692364 +6 - chr10 79717045 79717194 chr10,79717045,79717194,-,MIRc,SINE,MIR,-61,207,53,79716984,79717246 +6 - chr10 79717324 79717596 chr10,79717324,79717596,+,MLT1L,LTR,ERVL-MaLR,2,289,-321,79717323,79717917 -6 + chr10 79717597 79717849 chr10,79717597,79717849,-,L2,LINE,L2,-2345,1074,824,79715252,79718672 +6 - chr10 79717854 79718118 chr10,79717854,79718118,-,LTR85b,LTR,Gypsy?,-148,636,381,79717706,79718498 +6 - chr10 79718104 79718384 chr10,79718104,79718384,+,MLT1L,LTR,ERVL-MaLR,273,577,-33,79717832,79718417 -6 + chr10 79718900 79719316 chr10,79718900,79719316,-,MSTB1,LTR,ERVL-MaLR,0,432,1,79718900,79719316 +6 - chr10 79719720 79721841 chr10,79719720,79721841,+,L1MB4,LINE,L1,3118,5284,-905,79716603,79722746 -6 + chr10 79721841 79721883 chr10,79721841,79721883,+,MSTA,LTR,ERVL-MaLR,387,428,0,79721455,79721883 -6 + chr10 79721883 79722240 chr10,79721883,79722240,+,L1MB4,LINE,L1,5285,5650,-539,79716599,79722779 -6 + chr10 79722240 79722651 chr10,79722240,79722651,+,MSTA,LTR,ERVL-MaLR,2,428,0,79722239,79722651 -6 + chr10 79722651 79722775 chr10,79722651,79722775,+,L1MB4,LINE,L1,5651,5768,-412,79717001,79723187 -6 + chr10 79722775 79722906 chr10,79722775,79722906,+,AluSx,SINE,Alu,1,131,-181,79722775,79723087 -6 + chr10 79722912 79723305 chr10,79722912,79723305,+,L1MB4,LINE,L1,5757,6148,-32,79717156,79723337 -6 + chr10 79723310 79723565 chr10,79723310,79723565,-,MSTB1,LTR,ERVL-MaLR,0,432,174,79723310,79723738 +6 - chr10 79723565 79723654 chr10,79723565,79723656,+,AluJo,SINE,Alu,1,91,-221,79723565,79723877 -2 + chr10 79723915 79724012 chr10,79723848,79724063,+,AluJo,SINE,Alu,89,306,-6,79723760,79724069 -3 + chr10 79763635 79764186 chr10,79763635,79764186,-,L1PA15,LINE,L1,-92,6073,5523,79763543,79769708 +6 - chr10 79765008 79765111 chr10,79765008,79765111,+,MIR,SINE,MIR,146,261,-1,79764863,79765112 -6 + chr10 79765987 79766230 chr10,79765987,79766230,-,MIRb,SINE,MIR,-7,261,9,79765980,79766238 +5 - chr10 79785818 79785951 chr10,79785643,79785951,+,AluSz,SINE,Alu,2,309,-3,79785642,79785954 -4 + chr10 79785951 79786288 chr10,79785951,79786288,+,L1ME4a,LINE,L1,5599,5945,-179,79780353,79786467 -6 + chr10 79786312 79786376 chr10,79786312,79786376,-,MADE2,DNA,TcMar-Mariner,-6,74,11,79786306,79786386 +6 - chr10 79797896 79798027 chr10,79797896,79798350,+,L1MD,LINE,L1,4983,5458,-721,79792914,79799071 -2 + chr10 79826314 79826404 chr10,79826314,79826404,+,(GGC)n,Simple_repeat,Simple_repeat,1,95,0,79826314,79826404 +1 + chr10 79826314 79826404 chr10,79826314,79826404,+,(GGC)n,Simple_repeat,Simple_repeat,1,95,0,79826314,79826404 -1 + chr10 79826996 79827023 chr10,79826996,79827023,+,(CCTCG)n,Simple_repeat,Simple_repeat,1,28,0,79826996,79827023 +6 + chr10 79827566 79827584 chr10,79827566,79827584,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,79827566,79827584 +6 + chr10 79968213 79969054 chr10,79968042,79969054,-,L1PA16,LINE,L1,-9,6294,5257,79968033,79974310 -1 - chr10 79969056 79969188 chr10,79969056,79969188,+,AluSx,SINE,Alu,1,133,-179,79969056,79969367 +6 + chr10 79969193 79969488 chr10,79969193,79969488,+,AluSq4,SINE,Alu,1,296,-15,79969193,79969503 +6 + chr10 79969488 79969534 chr10,79969488,79969534,-,L1PA16,LINE,L1,-881,5265,5220,79968607,79974753 -6 - chr10 79970963 79971962 chr10,79969530,79971962,-,L1M2,LINE,L1,-767,6240,2148,79968763,79974109 +5 - chr10 79969530 79971962 chr10,79969530,79971962,-,L1M2,LINE,L1,-767,6240,2148,79968763,79974109 -5 - chr10 79972217 79972501 chr10,79972217,79972501,+,AluSx3,SINE,Alu,1,284,-27,79972217,79972528 -6 + chr10 79972217 79972501 chr10,79972217,79972501,+,AluSx3,SINE,Alu,1,284,-27,79972217,79972528 +6 + chr10 79972501 79972537 chr10,79972501,79972537,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,79972501,79972537 -6 + chr10 79972501 79972537 chr10,79972501,79972537,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,79972501,79972537 +6 + chr10 80047693 80047983 chr10,80047693,80047983,-,AluY,SINE,Alu,0,311,32,80047693,80048014 +5 - chr10 80055916 80055945 chr10,80055880,80055945,+,MIR,SINE,MIR,10,77,-185,80055871,80056130 -4 + chr10 80208027 80208241 chr10,80208027,80208289,+,MIRc,SINE,MIR,3,258,-10,80208025,80208299 +1 + chr10 80218019 80218577 chr10,80217877,80218577,-,LTR41B,LTR,ERVL,0,758,1,80217877,80218577 -2 - chr10 80219089 80219657 chr10,80219089,80219761,+,LTR8,LTR,ERV1,1,691,0,80219089,80219761 +5 + chr10 80250902 80250939 chr10,80250902,80250939,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,39,0,80250902,80250939 +6 + chr10 80251624 80251818 chr10,80251624,80251818,+,MIRb,SINE,MIR,2,212,-56,80251623,80251874 +6 + chr10 80253764 80254073 chr10,80253764,80254073,-,AluJb,SINE,Alu,-14,298,1,80253750,80254073 -6 - chr10 80529690 80529811 chr10,80529690,80529811,-,MLT1M,LTR,ERVL-MaLR,-116,556,438,80529574,80530248 +6 - chr10 80649797 80649846 chr10,80649755,80649846,-,L2c,LINE,L2,-277,3110,3024,80649478,80652869 -1 - chr10 82224213 82224227 chr10,82224111,82224227,+,L2a,LINE,L2,3285,3404,-22,82220827,82224249 -5 + chr10 82224259 82224359 chr10,82224259,82224400,+,L2a,LINE,L2,3275,3425,-1,82220985,82224401 -2 + chr10 82230221 82230300 chr10,82230221,82230300,-,MER2,DNA,TcMar-Tigger,0,345,267,82230221,82230566 +6 - chr10 82230349 82230365 chr10,82230349,82230907,+,L1M7,LINE,L1,1366,1933,-4285,82228984,82235192 -2 + chr10 82232740 82232920 chr10,82232701,82233082,-,MER74B,LTR,ERVL,-56,566,156,82232645,82233237 +1 - chr10 83672406 83672419 chr10,83672301,83672419,+,MIRb,SINE,MIR,146,268,0,83672156,83672419 -5 + chr10 83673229 83673239 chr10,83673229,83673403,-,MIRc,SINE,MIR,-79,189,11,83673150,83673413 +2 - chr10 83911654 83911791 chr10,83911603,83911809,-,MLT1B,LTR,ERVL-MaLR,0,390,189,83911603,83911997 +5 - chr10 84138443 84138750 chr10,84138443,84138750,-,AluSx1,SINE,Alu,-1,311,2,84138442,84138751 +6 - chr10 84138770 84138820 chr10,84138770,84138820,+,L2a,LINE,L2,3369,3417,-9,84135402,84138829 -6 + chr10 84140030 84140083 chr10,84140030,84140083,-,MIRc,SINE,MIR,-102,166,114,84139928,84140196 +6 - chr10 84140373 84140460 chr10,84140373,84140460,-,MER5A,DNA,hAT-Charlie,-37,152,63,84140336,84140522 +6 - chr10 84140527 84140582 chr10,84140527,84140607,-,MIR3,SINE,MIR,-62,146,61,84140465,84140667 +1 - chr10 84279980 84280065 chr10,84279967,84286006,+,L1PA2,LINE,L1,124,6151,-4,84279844,84286010 +1 + chr10 84288224 84288420 chr10,84288147,84288779,+,MLT2F,LTR,ERVL,1,663,0,84288147,84288779 +3 + chr10 84288594 84288779 chr10,84288147,84288779,+,MLT2F,LTR,ERVL,1,663,0,84288147,84288779 +2 + chr10 84288828 84289044 chr10,84288828,84289072,-,L3b,LINE,CR1,-1038,3061,2860,84287790,84291931 -5 - chr10 84291847 84292062 chr10,84291847,84292062,-,MIRb,SINE,MIR,-14,254,21,84291833,84292082 -6 - chr10 84294265 84294340 chr10,84294265,84294340,-,MER31B,LTR,ERV1,0,485,408,84294265,84294747 -6 - chr10 84294342 84294659 chr10,84294342,84294699,+,MLT1A0,LTR,ERVL-MaLR,1,357,-8,84294342,84294707 +5 + chr10 85195899 85195990 chr10,85195899,85195990,+,MIRc,SINE,MIR,15,104,-164,85195885,85196154 -6 + chr10 85195998 85196295 chr10,85195998,85196295,+,ERV3-16A3_LTR,LTR,ERVL,1,305,-117,85195998,85196412 -6 + chr10 85196302 85196565 chr10,85196302,85196565,-,AluJo,SINE,Alu,-45,267,5,85196257,85196569 +6 - chr10 85196589 85196690 chr10,85196589,85196690,+,MIR1_Amn,SINE,MIR,59,160,-70,85196531,85196760 -6 + chr10 85447530 85447689 chr10,85447530,85447689,+,MIRb,SINE,MIR,105,267,-1,85447426,85447690 +6 + chr10 85448281 85448563 chr10,85448281,85448563,-,L2a,LINE,L2,-5,3382,3090,85448276,85451652 -6 - chr10 85449680 85449918 chr10,85449680,85449918,-,MIRb,SINE,MIR,-22,246,4,85449658,85449921 -6 - chr10 85452871 85452921 chr10,85452818,85452921,-,MamRep4096,DNA,hAT?,-320,106,3,85452498,85452923 -2 - chr10 85461596 85461697 chr10,85461588,85461699,+,L1M5,LINE,L1,5475,5579,-583,85456114,85462282 +3 + chr10 85478011 85478117 chr10,85477994,85478189,-,MLT1C,LTR,ERVL-MaLR,0,467,277,85477994,85478465 -3 - chr10 85526880 85527506 chr10,85526805,85527506,-,LTR48,LTR,ERV1,0,787,1,85526805,85527506 +5 - chr10 85528373 85528860 chr10,85528373,85528860,-,LTR26,LTR,ERV1,0,603,104,85528373,85528963 +6 - chr10 85529040 85529094 chr10,85529040,85529094,+,L2c,LINE,L2,3334,3387,0,85525707,85529094 -6 + chr10 85530150 85530680 chr10,85530150,85530680,+,L1ME4a,LINE,L1,5565,6124,0,85524586,85530680 -6 + chr10 85531046 85531115 chr10,85531046,85531216,+,MER5A1,DNA,hAT-Charlie,1,166,0,85531046,85531216 -1 + chr10 85556400 85557436 chr10,85556400,85557703,+,L2c,LINE,L2,1916,3382,-5,85554485,85557708 -1 + chr10 85645650 85645720 chr10,85645650,85645720,-,MIR,SINE,MIR,-165,97,29,85645485,85645748 -6 - chr10 85646111 85646138 chr10,85646111,85646138,+,(GT)n,Simple_repeat,Simple_repeat,1,27,0,85646111,85646138 +6 + chr10 85647608 85647779 chr10,85647608,85647779,-,L2b,LINE,L2,-4,3371,3191,85647604,85650969 -6 - chr10 85647927 85648066 chr10,85647927,85648139,-,Charlie8,DNA,hAT-Charlie,-2175,253,21,85645752,85648159 -5 - chr10 86521952 86521987 chr10,86521952,86521987,+,G-rich,Low_complexity,Low_complexity,1,36,0,86521952,86521987 +6 + chr10 86522397 86522409 chr10,86522397,86522681,+,L1MC5a,LINE,L1,2466,2775,-2,86519932,86522683 +4 + chr10 86522509 86522681 chr10,86522397,86522681,+,L1MC5a,LINE,L1,2466,2775,-2,86519932,86522683 +2 + chr10 86522659 86522785 chr10,86522659,86522785,+,HAL1,LINE,L1,2353,2471,-36,86520307,86522821 +6 + chr10 86523724 86523890 chr10,86523724,86523890,+,MER5A1,DNA,hAT-Charlie,2,166,0,86523723,86523890 +6 + chr10 86524179 86524219 chr10,86524179,86524219,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,86524179,86524219 +6 + chr10 86749985 86750067 chr10,86749985,86750067,+,MER91C,DNA,hAT-Tip100,21,105,-35,86749965,86750102 -6 + chr10 86751053 86751148 chr10,86751053,86751148,-,L2b,LINE,L2,-2,3373,3276,86751051,86754423 +6 - chr10 86751808 86751883 chr10,86751808,86751883,+,(AT)n,Simple_repeat,Simple_repeat,1,75,0,86751808,86751883 -6 + chr10 86751860 86751885 chr10,86751860,86751885,+,(AC)n,Simple_repeat,Simple_repeat,1,25,0,86751860,86751885 -6 + chr10 86751991 86752269 chr10,86751991,86752269,-,AluSx1,SINE,Alu,-18,294,1,86751973,86752269 +6 - chr10 86753257 86753281 chr10,86753257,86753281,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,86753257,86753281 -6 + chr10 86753769 86753904 chr10,86753769,86753904,+,AluJr,SINE,Alu,156,290,-22,86753614,86753926 -6 + chr10 86753907 86753986 chr10,86753907,86753986,-,L2a,LINE,L2,-82,3344,3269,86753825,86757254 +6 - chr10 86754692 86754992 chr10,86754692,86754992,+,AluY,SINE,Alu,1,302,-9,86754692,86755001 -6 + chr10 86965345 86965619 chr10,86965319,86965619,-,AluSz,SINE,Alu,-9,303,2,86965310,86965620 +5 - chr10 86965619 86965666 chr10,86965619,86965666,-,MER44A,DNA,TcMar-Tigger,-241,98,50,86965378,86965715 +6 - chr10 86965666 86966223 chr10,86965666,86966223,-,LTR48B,LTR,ERV1,0,644,1,86965666,86966223 +5 - chr10 86966223 86966249 chr10,86966223,86966249,-,MER44A,DNA,TcMar-Tigger,-290,49,28,86965933,86966276 +6 - chr10 86966249 86966433 chr10,86966249,86966433,+,AluSp,SINE,Alu,123,310,-3,86966127,86966436 -6 + chr10 86966553 86966666 chr10,86966553,86966666,-,MIRb,SINE,MIR,-48,220,96,86966505,86966761 +6 - chr10 86967150 86967200 chr10,86967150,86967200,+,(GT)n,Simple_repeat,Simple_repeat,1,50,0,86967150,86967200 -6 + chr10 86967917 86968128 chr10,86967917,86968128,+,MIRb,SINE,MIR,46,268,0,86967872,86968128 -6 + chr10 86970437 86970472 chr10,86970437,86970472,+,(GCCCT)n,Simple_repeat,Simple_repeat,1,39,0,86970437,86970472 -6 + chr10 87000775 87000965 chr10,87000775,87000965,-,L1PA5,LINE,L1,0,6154,5964,87000775,87006928 -6 - chr10 87000967 87001001 chr10,87000967,87001001,+,A-rich,Low_complexity,Low_complexity,1,34,0,87000967,87001001 +6 + chr10 87001053 87001357 chr10,87001053,87001357,-,AluY,SINE,Alu,-6,305,2,87001047,87001358 -6 - chr10 87003180 87003355 chr10,87003180,87003355,+,MER5B,DNA,hAT-Charlie,1,178,0,87003180,87003355 +6 + chr10 87003385 87003421 chr10,87003385,87003521,+,MIR3,SINE,MIR,83,207,-1,87003303,87003522 +4 + chr10 87113954 87114021 chr10,87113724,87114021,+,AluSz6,SINE,Alu,1,300,-12,87113724,87114033 +1 + chr10 87114308 87114344 chr10,87114308,87114344,-,U2,snRNA,snRNA,-153,35,1,87114155,87114344 -6 - chr10 87114350 87114444 chr10,87114350,87114444,-,L2,LINE,L2,-604,2815,2723,87113746,87117166 -6 - chr10 87115329 87115349 chr10,87115048,87115349,-,AluSx,SINE,Alu,-10,302,2,87115038,87115350 -2 - chr10 87115349 87115473 chr10,87115349,87115473,-,L2,LINE,L2,-1093,2326,2198,87114256,87117670 -6 - chr10 87244132 87244441 chr10,87244084,87244441,+,L1MB4,LINE,L1,5285,5650,-539,87238800,87244980 -5 + chr10 87244441 87244852 chr10,87244441,87244852,+,MSTA,LTR,ERVL-MaLR,2,428,0,87244440,87244852 -6 + chr10 87244852 87244976 chr10,87244852,87244976,+,L1MB4,LINE,L1,5651,5768,-412,87239202,87245388 -6 + chr10 87244976 87245107 chr10,87244976,87245107,+,AluSx,SINE,Alu,1,133,-179,87244976,87245286 -6 + chr10 87245113 87245506 chr10,87245113,87245506,+,L1MB4,LINE,L1,5757,6148,-32,87239357,87245538 -6 + chr10 87245511 87245766 chr10,87245511,87245766,-,MSTB1,LTR,ERVL-MaLR,0,432,174,87245511,87245939 +6 - chr10 87245766 87245855 chr10,87245766,87245857,+,AluJo,SINE,Alu,1,91,-221,87245766,87246078 -2 + chr10 87246115 87246212 chr10,87246048,87246263,+,AluJo,SINE,Alu,89,306,-6,87245960,87246269 -3 + chr10 87287176 87287279 chr10,87287176,87287279,+,MIR,SINE,MIR,146,261,-1,87287031,87287280 -6 + chr10 87288157 87288401 chr10,87288157,87288401,-,MIRb,SINE,MIR,-7,261,9,87288150,87288409 +6 - chr10 87307957 87308093 chr10,87307782,87308093,+,AluSz,SINE,Alu,2,312,0,87307781,87308093 -4 + chr10 87308093 87308429 chr10,87308093,87308429,+,L1ME4a,LINE,L1,5620,5946,-178,87302474,87308607 -6 + chr10 87308453 87308517 chr10,87308453,87308517,-,MADE2,DNA,TcMar-Mariner,-6,74,11,87308447,87308527 +6 - chr10 87319856 87319962 chr10,87319758,87319962,-,MLT1J,LTR,ERVL-MaLR,-273,239,24,87319485,87319985 +5 - chr10 87320068 87320199 chr10,87320068,87320522,+,L1M4,LINE,L1,4983,5458,-721,87315086,87321243 -2 + chr10 87320553 87320743 chr10,87320521,87320968,+,L1ME1,LINE,L1,5339,5791,-388,87315183,87321356 -5 + chr10 87325044 87325073 chr10,87324787,87325073,-,AluSq2,SINE,Alu,-27,286,1,87324760,87325073 +5 - chr10 87334329 87334491 chr10,87334329,87334491,+,MLT1C,LTR,ERVL-MaLR,446,604,-6,87333884,87334497 -6 + chr10 87334534 87334814 chr10,87334534,87334837,+,AluY,SINE,Alu,1,298,-13,87334534,87334850 -2 + chr10 87342358 87342445 chr10,87342358,87342445,+,(GGC)n,Simple_repeat,Simple_repeat,1,92,0,87342358,87342445 -6 + chr10 87343037 87343069 chr10,87343037,87343069,+,(CCTCG)n,Simple_repeat,Simple_repeat,1,33,0,87343037,87343069 +6 + chr10 87354620 87354888 chr10,87354480,87354888,-,MER63C,DNA,hAT-Blackjack,-147,783,420,87354333,87355307 -2 - chr10 87607985 87607995 chr10,87607919,87607995,+,LTR37A,LTR,ERV1,201,272,-154,87607719,87608149 +1 + chr10 87610194 87610474 chr10,87610194,87610498,+,AluSx,SINE,Alu,1,303,-9,87610194,87610507 -2 + chr10 87611956 87612079 chr10,87610870,87612437,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,87610870,87612437 -3 + chr10 87622328 87622480 chr10,87622328,87622484,+,L2c,LINE,L2,3180,3345,-42,87619149,87622526 -2 + chr10 87630190 87630255 chr10,87629203,87630454,+,MER57A-int,LTR,ERV1,3912,5189,-998,87625292,87631452 +3 + chr10 87659194 87659279 chr10,87659194,87659340,+,MIRb,SINE,MIR,14,178,-90,87659181,87659430 +5 + chr10 87659881 87659907 chr10,87659881,87659907,+,(GCT)n,Simple_repeat,Simple_repeat,1,26,0,87659881,87659907 -6 + chr10 87659907 87659924 chr10,87659907,87659924,+,(CGC)n,Simple_repeat,Simple_repeat,1,17,0,87659907,87659924 -6 + chr10 88939875 88939917 chr10,88939875,88939917,+,L2a,LINE,L2,3360,3401,-25,88936516,88939942 +6 + chr10 89016163 89016230 chr10,89016163,89016230,-,MER33,DNA,hAT-Charlie,-94,230,164,89016069,89016393 -6 - chr10 89016243 89016380 chr10,89016243,89016380,-,L1MEc,LINE,L1,-6120,280,140,89010123,89016519 -6 - chr10 89016949 89017059 chr10,89016949,89017624,-,L1MEi,LINE,L1,-699,1513,821,89016250,89018444 -5 - chr10 89285036 89285118 chr10,89284719,89285118,+,LTR7,LTR,ERV1,1,450,0,89284719,89285118 +2 + chr10 89285118 89285264 chr10,89285118,89288116,+,HERVH-int,LTR,ERV1,1,2992,-4721,89285118,89292837 +4 + chr10 89291987 89292125 chr10,89291978,89292160,+,MLT1J2,LTR,ERVL-MaLR,248,430,-18,89291731,89292178 +5 + chr10 89456134 89456248 chr10,89456134,89456278,+,MIR,SINE,MIR,64,262,0,89456071,89456278 +4 + chr10 89462867 89463078 chr10,89462803,89463206,+,MLT1J,LTR,ERVL-MaLR,56,462,-50,89462748,89463256 +3 + chr10 89646459 89646546 chr10,89646459,89646610,-,MIR3,SINE,MIR,-6,202,35,89646453,89646644 +2 - chr10 89650059 89650231 chr10,89650016,89650400,-,L2a,LINE,L2,-488,2931,2523,89649528,89652922 -3 - chr10 89650766 89650822 chr10,89650766,89650842,+,L2b,LINE,L2,3299,3374,-1,89647468,89650843 -1 + chr10 89667181 89667656 chr10,89667133,89667656,-,L1MB8,LINE,L1,-4,6174,5643,89667129,89673298 +5 - chr10 89667656 89667675 chr10,89667656,89667675,+,A-rich,Low_complexity,Low_complexity,51,69,0,89667606,89667675 -6 + chr10 89667679 89667823 chr10,89667679,89667823,+,L1ME1,LINE,L1,6012,6169,-10,89661668,89667833 -6 + chr10 89667976 89668106 chr10,89667976,89668106,-,MIRc,SINE,MIR,-72,196,61,89667904,89668166 +6 - chr10 89694295 89694367 chr10,89692608,89694367,-,Tigger4,DNA,TcMar-Tigger,-601,2130,360,89692007,89694726 +5 - chr10 89694397 89694540 chr10,89694397,89694540,-,MER46C,DNA,TcMar-Tigger,-205,133,1,89694192,89694540 +6 - chr10 89694552 89694614 chr10,89694552,89694614,-,MIRc,SINE,MIR,-122,146,79,89694430,89694692 +6 - chr10 89699524 89699671 chr10,89699516,89699877,+,L2,LINE,L2,2635,3014,-405,89696882,89700282 -1 + chr10 89829592 89829745 chr10,89829592,89829906,+,ERVL-E-int,LTR,ERVL,5343,5667,0,89824250,89829906 +4 + chr10 89829970 89830304 chr10,89829907,89830414,+,LTR33C,LTR,ERVL,2,589,-40,89829906,89830454 +3 + chr10 89835201 89835257 chr10,89835191,89835347,-,MLT1K,LTR,ERVL-MaLR,-4,591,442,89835187,89835788 -3 - chr10 89839633 89839752 chr10,89839633,89839752,-,Charlie1b,DNA,hAT-Charlie,-2,521,400,89839631,89840151 -6 - chr10 89839751 89840115 chr10,89839751,89840115,-,Charlie1,DNA,hAT-Charlie,-1746,1035,630,89838005,89840744 -6 - chr10 89840197 89840861 chr10,89840197,89840992,-,L1ME2z,LINE,L1,-4,6169,5239,89840193,89846230 -5 - chr10 89915489 89915610 chr10,89915419,89915610,-,MIRb,SINE,MIR,-8,260,50,89915411,89915659 +5 - chr10 89915916 89916030 chr10,89915916,89916030,+,MIR,SINE,MIR,114,226,-36,89915803,89916066 -6 + chr10 89916086 89916176 chr10,89916086,89916176,+,L2b,LINE,L2,3289,3378,-9,89912798,89916185 -6 + chr10 89916378 89916519 chr10,89916378,89916519,+,Plat_L3,LINE,CR1,3066,3225,-361,89913313,89916880 -6 + chr10 89956215 89956389 chr10,89956082,89956389,+,L1MEi,LINE,L1,13,317,-1895,89956070,89958284 -4 + chr10 89956398 89956437 chr10,89956398,89956461,+,L1MEi,LINE,L1,1552,1615,-597,89954847,89957058 -2 + chr10 89957175 89957373 chr10,89957175,89957400,-,Tigger4a,DNA,TcMar-Tigger,-1,235,4,89957174,89957403 +1 - chr10 90402685 90402808 chr10,90402685,90402893,+,MIRb,SINE,MIR,2,221,-47,90402684,90402940 -2 + chr10 90404017 90404054 chr10,90404017,90404245,-,MamTip1,DNA,hAT-Tip100,-47,220,1,90403970,90404245 +2 - chr10 90451680 90451833 chr10,90451458,90451897,-,LTR33B,LTR,ERVL,-2,501,1,90451456,90451897 +3 - chr10 90454170 90454315 chr10,90454039,90454360,+,MLT1C,LTR,ERVL-MaLR,3,307,-160,90454037,90454520 +1 + chr10 90454680 90454823 chr10,90454504,90456494,-,L1PA15,LINE,L1,0,6165,4079,90454504,90460572 -1 - chr10 90462717 90463089 chr10,90462532,90463089,-,L2a,LINE,L2,-100,3326,2699,90462432,90465787 -1 - chr10 90463089 90463386 chr10,90463089,90463460,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,90463089,90463460 +4 + chr10 90467865 90467952 chr10,90467549,90468503,-,L1MC3,LINE,L1,-121,7664,6715,90467428,90475217 -5 - chr10 90486019 90486043 chr10,90485470,90486043,-,L1M5,LINE,L1,-945,5201,4594,90484525,90490636 -2 - chr10 90486050 90486072 chr10,90486050,90486261,+,MIR,SINE,MIR,2,213,-49,90486049,90486310 +4 + chr10 90499273 90499296 chr10,90497992,90499296,-,L1PA7,LINE,L1,-5,6149,4844,90497987,90504139 -2 - chr10 90499403 90499495 chr10,90499403,90499495,-,LTR33B,LTR,ERVL,-20,483,384,90499383,90499878 -6 - chr10 90499495 90500000 chr10,90499495,90500000,-,MER76,LTR,ERVL,0,691,179,90499495,90500178 -6 - chr10 90500003 90500167 chr10,90500003,90500167,-,MER76,LTR,ERVL,-516,175,1,90499487,90500167 -6 - chr10 90502789 90502968 chr10,90502789,90503089,+,MLT1K,LTR,ERVL-MaLR,194,493,-102,90502596,90503191 +5 + chr10 90527274 90527369 chr10,90525642,90527369,-,L1MA3,LINE,L1,-5809,1756,2,90519833,90527370 +4 - chr10 90540732 90540746 chr10,90540665,90540746,+,MIRc,SINE,MIR,82,187,-81,90540584,90540827 -4 + chr10 90540791 90540805 chr10,90540791,90541150,+,Tigger4b,DNA,TcMar-Tigger,2,360,-1,90540790,90541151 -1 + chr10 90994620 90994753 chr10,90994448,90994940,-,L1MEd,LINE,L1,-5173,1930,1414,90989275,90996353 -1 - chr10 90997574 90997713 chr10,90997574,90997995,-,MLT1B,LTR,ERVL-MaLR,0,390,3,90997574,90997997 +1 - chr10 91006145 91006356 chr10,91005894,91006356,+,MLT1J,LTR,ERVL-MaLR,4,474,-38,91005891,91006394 +2 + chr10 91006379 91006390 chr10,91006379,91006607,-,LTR104_Mam,LTR,Gypsy,-770,739,516,91005609,91007122 -5 - chr10 91061979 91062078 chr10,91061808,91062078,+,L2c,LINE,L2,3125,3382,-5,91058684,91062083 +2 + chr10 91782839 91783040 chr10,91782790,91783040,-,MLT1C,LTR,ERVL-MaLR,-2,465,213,91782788,91783252 +5 - chr10 91797955 91797975 chr10,91797955,91797975,+,(AAC)n,Simple_repeat,Simple_repeat,1,20,0,91797955,91797975 -6 + chr10 93073371 93073441 chr10,93073371,93073441,+,MIR3,SINE,MIR,107,179,-29,93073265,93073470 +6 + chr10 94088139 94088201 chr10,94088139,94088284,+,MIRb,SINE,MIR,109,252,-16,94088031,94088300 -2 + chr10 94096380 94096449 chr10,94096296,94096662,-,THE1C,LTR,ERVL-MaLR,0,375,1,94096296,94096662 +3 - chr10 94100022 94100189 chr10,94100022,94100189,+,MIR,SINE,MIR,36,199,-63,94099987,94100252 -6 + chr10 94104161 94104240 chr10,94104161,94104350,-,MIR,SINE,MIR,-4,258,26,94104157,94104375 +2 - chr10 94104338 94104350 chr10,94104161,94104350,-,MIR,SINE,MIR,-4,258,26,94104157,94104375 +4 - chr10 94105091 94105250 chr10,94105091,94105250,-,MIR3,SINE,MIR,-7,201,37,94105084,94105286 +6 - chr10 94105600 94105696 chr10,94105600,94105696,+,L2a,LINE,L2,3335,3425,-1,94102266,94105697 -6 + chr10 94105871 94106109 chr10,94105871,94106109,-,MIR,SINE,MIR,-3,259,10,94105868,94106118 +6 - chr10 94107593 94107725 chr10,94107492,94107725,+,X7B_LINE,LINE,CR1,41,262,-5,94107452,94107730 -5 + chr10 94107763 94107872 chr10,94107763,94107875,+,Charlie15a,DNA,hAT-Charlie,64,180,-44,94107700,94107919 -1 + chr10 94108388 94108602 chr10,94108388,94108602,+,MIRb,SINE,MIR,34,258,-10,94108355,94108612 -1 + chr10 94120973 94121008 chr10,94120973,94121008,+,GA-rich,Low_complexity,Low_complexity,1,37,0,94120973,94121008 +6 + chr10 94121075 94121107 chr10,94121075,94121136,-,MIRb,SINE,MIR,-10,258,197,94121065,94121332 -5 - chr10 94227126 94227176 chr10,94226831,94227176,-,AluSx1,SINE,Alu,0,312,1,94226831,94227176 +4 - chr10 94283341 94283418 chr10,94283341,94283418,+,AmnSINE1,SINE,5S-Deu-L2,464,533,-42,94282878,94283460 -6 + chr10 94315123 94315219 chr10,94315123,94315219,-,MamSINE1,SINE,tRNA-RTE,-96,194,108,94315027,94315326 +6 - chr10 94610801 94610890 chr10,94610590,94610890,-,AluSq2,SINE,Alu,-15,298,1,94610575,94610890 -2 - chr10 94610890 94611055 chr10,94610890,94611055,+,L1MEh,LINE,L1,1427,1609,-626,94609464,94611681 +6 + chr10 95141925 95142004 chr10,95141833,95142984,+,L1PA11,LINE,L1,5036,6174,0,95136798,95142984 -5 + chr10 95142610 95142697 chr10,95141833,95142984,+,L1PA11,LINE,L1,5036,6174,0,95136798,95142984 -5 + chr10 95228304 95228426 chr10,95228304,95228475,-,MIR,SINE,MIR,0,262,89,95228304,95228563 +2 - chr10 95753713 95754006 chr10,95753713,95754006,+,AluSz6,SINE,Alu,1,293,-19,95753713,95754025 -6 + chr10 95754026 95754331 chr10,95754026,95754331,+,AluSq2,SINE,Alu,1,305,-8,95754026,95754339 -6 + chr10 95755114 95755204 chr10,95755114,95755204,-,L2a,LINE,L2,-1,3425,3337,95755113,95758540 +6 - chr10 95755871 95755942 chr10,95755871,95755942,+,GA-rich,Low_complexity,Low_complexity,1,72,0,95755871,95755942 -6 + chr10 95833623 95833767 chr10,95833623,95834029,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,95833623,95834029 -4 - chr10 95873700 95873758 chr10,95873700,95874049,-,THE1A,LTR,ERVL-MaLR,0,355,1,95873700,95874049 -5 - chr10 95875084 95875624 chr10,95874049,95875624,-,THE1A-int,LTR,ERVL-MaLR,0,1580,9,95874049,95875632 +5 - chr10 95875624 95875666 chr10,95875624,95875966,-,THE1A,LTR,ERVL-MaLR,-2,353,1,95875622,95875966 +2 - chr10 95897558 95897679 chr10,95897397,95897705,+,AluY,SINE,Alu,1,304,-7,95897397,95897712 -3 + chr10 95918938 95920183 chr10,95918076,95920183,-,L1MA3,LINE,L1,-4375,3190,1103,95913701,95921285 +5 - chr10 95920187 95920552 chr10,95920187,95920552,-,THE1D,LTR,ERVL-MaLR,-5,376,2,95920182,95920553 +6 - chr10 95920553 95921597 chr10,95920553,95921598,-,L1MA3,LINE,L1,-6459,1106,16,95914094,95921613 +2 - chr10 96018720 96018754 chr10,96018715,96018754,+,(T)n,Simple_repeat,Simple_repeat,1,39,0,96018715,96018754 -5 + chr10 96018785 96019102 chr10,96018785,96019102,-,AluJb,SINE,Alu,0,312,5,96018785,96019106 +6 - chr10 96019383 96019527 chr10,96019383,96019527,+,MER5B,DNA,hAT-Charlie,13,178,0,96019371,96019527 -6 + chr10 96020100 96020630 chr10,96020100,96020630,+,L1MEi,LINE,L1,14,605,-1607,96020087,96022237 -6 + chr10 96020697 96020751 chr10,96020697,96020751,+,L1ME3C,LINE,L1,5388,5441,-682,96015310,96021433 -6 + chr10 96020751 96021069 chr10,96020751,96021069,+,AluJr,SINE,Alu,2,312,0,96020750,96021069 -6 + chr10 96021069 96021420 chr10,96021069,96021420,+,L1ME3C,LINE,L1,5442,5830,-293,96015628,96021713 -5 + chr10 96021455 96021550 chr10,96021455,96021550,+,MER5B,DNA,hAT-Charlie,84,178,0,96021372,96021550 -6 + chr10 96022653 96022714 chr10,96022653,96023080,-,L2c,LINE,L2,-5,3382,2954,96022648,96026033 +2 - chr10 96292685 96292946 chr10,96292632,96292946,-,L1MC1,LINE,L1,0,6333,5997,96292632,96298942 +5 - chr10 96292948 96293098 chr10,96292948,96293098,-,MIRb,SINE,MIR,-72,196,47,96292876,96293144 +6 - chr10 96293821 96294063 chr10,96293821,96294063,-,LTR81B,LTR,Gypsy,-5,1388,1129,96293816,96295191 +6 - chr10 96294882 96294967 chr10,96294684,96295033,+,MLT1A,LTR,ERVL-MaLR,1,374,0,96294684,96295033 -3 + chr10 96300263 96300278 chr10,96300127,96300278,-,MIRb,SINE,MIR,-32,236,74,96300095,96300351 +4 - chr10 96993742 96993776 chr10,96993742,96993776,+,(TA)n,Simple_repeat,Simple_repeat,1,36,0,96993742,96993776 +6 + chr10 97102761 97102870 chr10,97102761,97102870,+,MIR3,SINE,MIR,18,135,-73,97102744,97102943 +6 + chr10 97334635 97334684 chr10,97334635,97334684,+,(CGGAGC)n,Simple_repeat,Simple_repeat,1,50,0,97334635,97334684 +6 + chr10 97342965 97343203 chr10,97342965,97343365,+,L1M4,LINE,L1,5372,5781,-397,97337594,97343762 +5 + chr10 98255773 98255987 chr10,98255773,98255987,-,L3,LINE,CR1,-33,4066,3844,98255740,98259830 -6 - chr10 98256178 98256575 chr10,98256178,98256578,+,L2b,LINE,L2,2613,3130,-245,98253566,98256823 +5 + chr10 99437041 99437234 chr10,99437041,99437234,+,MIRc,SINE,MIR,31,252,-10,99437011,99437244 +6 + chr10 99437487 99437606 chr10,99437487,99437606,-,L1MB2,LINE,L1,0,6171,6046,99437487,99443651 -6 - chr10 99437611 99437906 chr10,99437611,99437906,-,AluSx1,SINE,Alu,-18,294,1,99437593,99437906 -6 - chr10 99651989 99652085 chr10,99651882,99652085,-,L1M4,LINE,L1,-982,5164,4964,99650900,99657048 +5 - chr10 99653825 99653844 chr10,99653591,99653844,-,LTR85c,LTR,Gypsy?,-445,378,102,99653146,99653945 +4 - chr10 99957381 99957554 chr10,99957381,99957554,+,Charlie1a,DNA,hAT-Charlie,3,171,-1284,99957379,99958838 +6 + chr10 99957554 99957850 chr10,99957554,99957850,+,AluJr,SINE,Alu,2,298,-14,99957553,99957864 +6 + chr10 99957851 99958141 chr10,99957851,99958141,+,AluSz,SINE,Alu,1,296,-16,99957851,99958157 +6 + chr10 99958141 99958381 chr10,99958141,99959323,+,Charlie1a,DNA,hAT-Charlie,172,1392,-63,99957970,99959386 +5 + chr10 100190036 100190164 chr10,100190020,100190320,-,AluJb,SINE,Alu,-9,303,1,100190011,100190320 -1 - chr10 100190299 100190320 chr10,100190020,100190320,-,AluJb,SINE,Alu,-9,303,1,100190011,100190320 -1 - chr10 100231246 100231498 chr10,100231189,100231498,-,AluSq2,SINE,Alu,-2,311,4,100231187,100231501 -2 - chr10 100231540 100231637 chr10,100231540,100231637,+,MIRb,SINE,MIR,110,206,-62,100231431,100231699 +6 + chr10 100335563 100335587 chr10,100335383,100335587,+,MIRc,SINE,MIR,47,256,-6,100335337,100335593 -5 + chr10 100342725 100342824 chr10,100342668,100342824,+,L2c,LINE,L2,3018,3203,-184,100339651,100343008 -4 + chr10 100346288 100346305 chr10,100346053,100346305,+,MIR,SINE,MIR,6,268,0,100346048,100346305 -4 + chr10 100381216 100381305 chr10,100380919,100381305,+,LTR7B,LTR,ERV1,1,464,0,100380919,100381305 +2 + chr10 100381305 100381754 chr10,100381305,100381754,+,HERVH-int,LTR,ERV1,1,459,-7254,100381305,100389008 +6 + chr10 100381823 100382471 chr10,100381823,100382471,+,HERVH-int,LTR,ERV1,793,1428,-6285,100381031,100388756 +6 + chr10 100412934 100412955 chr10,100412669,100412955,-,AluSx1,SINE,Alu,-22,290,1,100412647,100412955 -1 - chr10 100413272 100413378 chr10,100413272,100413378,-,MamRTE1,LINE,RTE-BovB,-15,3797,3693,100413257,100417070 -6 - chr10 100911624 100911749 chr10,100911624,100911749,-,FLAM_C,SINE,Alu,-18,125,1,100911606,100911749 +6 - chr10 100911977 100912119 chr10,100911977,100912119,-,MIRb,SINE,MIR,-7,261,117,100911970,100912235 +6 - chr10 100967802 100967828 chr10,100967802,100967828,+,(C)n,Simple_repeat,Simple_repeat,1,26,0,100967802,100967828 +6 + chr10 100968011 100968135 chr10,100968011,100968135,+,MIRb,SINE,MIR,90,229,-39,100967922,100968174 +5 + chr10 101060029 101060103 chr10,101060006,101060103,+,Penelope1_Vert,LINE,Penelope,567,657,-430,101059440,101060533 -5 + chr10 101060239 101060404 chr10,101060239,101060404,-,L2b,LINE,L2,-3,3372,3191,101060236,101063594 +6 - chr10 101176323 101176600 chr10,101176288,101176600,-,AluJb,SINE,Alu,-4,308,1,101176284,101176600 -1 - chr10 101176600 101176697 chr10,101176600,101177023,+,LTR33C,LTR,ERVL,213,628,-1,101176388,101177024 +4 + chr10 101176989 101177023 chr10,101176600,101177023,+,LTR33C,LTR,ERVL,213,628,-1,101176388,101177024 +2 + chr10 101177023 101177102 chr10,101177023,101177139,+,MLT1J,LTR,ERVL-MaLR,359,470,-42,101176665,101177181 +4 + chr10 101191427 101191510 chr10,101191427,101191630,-,MIR,SINE,MIR,-8,254,40,101191419,101191669 -4 - chr10 101193698 101194147 chr10,101193582,101194192,+,L1MC4,LINE,L1,7169,7811,-231,101186414,101194423 +5 + chr10 101236072 101236102 chr10,101236072,101236102,+,(TGGGG)n,Simple_repeat,Simple_repeat,1,30,0,101236072,101236102 +6 + chr10 101236480 101236503 chr10,101236480,101236503,+,(CGC)n,Simple_repeat,Simple_repeat,1,23,0,101236480,101236503 +6 + chr10 101237424 101237491 chr10,101237424,101237491,+,(CCTCTT)n,Simple_repeat,Simple_repeat,1,70,0,101237424,101237491 +6 + chr10 101237483 101237513 chr10,101237483,101237513,+,(TTTCG)n,Simple_repeat,Simple_repeat,1,31,0,101237483,101237513 +6 + chr10 101237625 101237710 chr10,101237625,101237761,+,MIRc,SINE,MIR,7,151,-57,101237619,101237818 +4 + chr10 101252821 101253104 chr10,101252793,101253104,-,AluSz,SINE,Alu,-3,309,1,101252790,101253104 +5 - chr10 101253104 101253120 chr10,101253104,101253120,-,AluSx,SINE,Alu,-179,133,120,101252925,101253239 +6 - chr10 101254052 101254102 chr10,101254052,101254102,+,(CTGCCCT)n,Simple_repeat,Simple_repeat,1,51,0,101254052,101254102 -6 + chr10 101254477 101254567 chr10,101254477,101254596,+,L2c,LINE,L2,3276,3386,-1,101251202,101254597 -2 + chr10 101263283 101263316 chr10,101263283,101263316,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,101263283,101263316 -6 + chr10 101263316 101263361 chr10,101263316,101263361,+,(GTGCATGTGT)n,Simple_repeat,Simple_repeat,1,45,0,101263316,101263361 -6 + chr10 101263361 101263374 chr10,101263361,101263374,+,(TG)n,Simple_repeat,Simple_repeat,2,14,0,101263360,101263374 -6 + chr10 101267585 101267698 chr10,101267585,101267786,+,L3,LINE,CR1,3811,4020,-79,101263775,101267865 +4 + chr10 101269968 101270148 chr10,101269862,101270256,+,MER113,DNA,hAT-Charlie,128,518,-3,101269735,101270259 +5 + chr10 101311018 101311058 chr10,101310959,101311058,+,(CT)n,Simple_repeat,Simple_repeat,1,104,0,101310959,101311058 +1 + chr10 101311100 101311138 chr10,101311100,101311138,+,(CTTCCT)n,Simple_repeat,Simple_repeat,1,38,0,101311100,101311138 +6 + chr10 101819078 101819248 chr10,101819017,101819314,-,L2c,LINE,L2,-108,3267,2973,101818909,101822286 -1 - chr10 102449817 102449961 chr10,102449641,102449961,-,AluJb,SINE,Alu,0,312,1,102449641,102449961 -1 - chr10 102450876 102450906 chr10,102450876,102450906,+,(GCGGC)n,Simple_repeat,Simple_repeat,1,31,0,102450876,102450906 +6 + chr10 102451854 102451975 chr10,102451854,102451975,-,MIRb,SINE,MIR,-137,131,10,102451717,102451984 -6 - chr10 102452031 102452043 chr10,102452031,102452043,-,MIRb,SINE,MIR,-51,217,206,102451980,102452248 -6 - chr10 102452043 102452342 chr10,102452043,102452342,-,AluSx,SINE,Alu,-11,301,2,102452032,102452343 -6 - chr10 102452342 102452354 chr10,102452342,102452354,-,MIRb,SINE,MIR,-63,205,197,102452279,102452550 -6 - chr10 102452354 102452664 chr10,102452354,102452664,-,AluSx4,SINE,Alu,-1,309,1,102452353,102452664 -6 - chr10 102452664 102452826 chr10,102452664,102452826,-,MIRb,SINE,MIR,-72,196,36,102452592,102452861 -6 - chr10 102453280 102453406 chr10,102453280,102453406,-,PrimLTR79,LTR,ERV1,0,503,365,102453280,102453770 -6 - chr10 102453430 102453539 chr10,102453430,102453710,+,AluJb,SINE,Alu,11,287,-25,102453420,102453735 +5 + chr10 102453874 102454170 chr10,102453874,102454170,-,AluSp,SINE,Alu,-18,295,1,102453856,102454170 -6 - chr10 102454314 102454374 chr10,102454314,102454374,-,AluJb,SINE,Alu,-4,308,247,102454310,102454620 -6 - chr10 102454374 102455335 chr10,102454374,102455335,-,LTR5_Hs,LTR,ERVK,0,968,1,102454374,102455335 -6 - chr10 102455335 102455452 chr10,102455335,102455452,-,AluJb,SINE,Alu,-66,246,134,102455269,102455585 -6 - chr10 102455452 102455576 chr10,102455452,102455576,-,AluJo,SINE,Alu,-188,124,1,102455264,102455576 -6 - chr10 102455609 102455701 chr10,102455609,102455701,+,L1MA1,LINE,L1,6178,6275,-27,102449432,102455728 +6 + chr10 102455856 102456297 chr10,102455856,102456339,+,MLT1D,LTR,ERVL-MaLR,21,505,0,102455836,102456339 +5 + chr10 102643328 102643365 chr10,102643328,102643365,+,A-rich,Low_complexity,Low_complexity,1,37,0,102643328,102643365 -6 + chr10 102643548 102643604 chr10,102643548,102643604,+,G-rich,Low_complexity,Low_complexity,1,56,0,102643548,102643604 -6 + chr10 102834425 102834516 chr10,102834425,102834575,+,MIRb,SINE,MIR,97,267,-1,102834329,102834576 +5 + chr10 102914585 102914666 chr10,102914343,102914666,+,AluSx1,SINE,Alu,1,312,0,102914343,102914666 +1 + chr10 103450306 103450434 chr10,103450306,103450434,-,MIRb,SINE,MIR,-130,138,4,103450176,103450437 -6 - chr10 103450723 103450852 chr10,103450723,103450852,+,MIRc,SINE,MIR,102,225,-43,103450622,103450895 +5 + chr10 103452923 103453014 chr10,103452923,103453014,+,L3,LINE,CR1,3826,3924,-175,103449098,103453189 +6 + chr10 103462430 103462492 chr10,103462215,103462492,+,Charlie17b,DNA,hAT-Charlie,876,1162,-42,103461340,103462534 +2 + chr10 103462502 103462695 chr10,103462502,103462718,+,MLT1A0,LTR,ERVL-MaLR,83,379,-11,103462420,103462729 +5 + chr10 103479633 103479752 chr10,103479633,103479752,-,L2b,LINE,L2,-175,3200,3070,103479458,103482821 +6 - chr10 103479925 103479997 chr10,103479925,103480118,-,Helitron3Na_Mam,RC,Helitron,-260,226,25,103479665,103480142 +2 - chr10 103511779 103511882 chr10,103511634,103511882,+,L2b,LINE,L2,3103,3372,-3,103508532,103511885 -5 + chr10 103512042 103512141 chr10,103512042,103512141,-,L2b,LINE,L2,0,3375,3263,103512042,103515403 +6 - chr10 103550752 103550963 chr10,103550752,103550963,+,MIRb,SINE,MIR,22,264,-4,103550731,103550967 +6 + chr10 103608635 103608662 chr10,103608635,103608662,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,103608635,103608662 +6 + chr10 103608662 103608766 chr10,103608662,103608766,-,AluJo,SINE,Alu,-194,118,2,103608468,103608767 -6 - chr10 103608879 103609187 chr10,103608879,103609187,+,AluJo,SINE,Alu,22,312,0,103608858,103609187 +6 + chr10 103609561 103609682 chr10,103609561,103609682,-,L2a,LINE,L2,0,3426,3305,103609561,103612986 -6 - chr10 103609806 103610042 chr10,103609806,103610042,+,MIRb,SINE,MIR,3,260,-8,103609804,103610050 +6 + chr10 103878522 103878613 chr10,103878522,103878613,-,LTR27B,LTR,ERV1,-117,477,384,103878405,103878996 +6 - chr10 103878778 103879189 chr10,103878778,103879189,-,LTR16C,LTR,ERVL,-1,488,54,103878777,103879242 +6 - chr10 103879211 103879761 chr10,103879211,103879935,-,L2a,LINE,L2,-37,3389,2492,103879174,103882426 +1 - chr10 104323369 104323383 chr10,104323230,104323383,-,MIRb,SINE,MIR,-13,255,101,104323217,104323483 -1 - chr10 104326630 104327004 chr10,104326630,104327056,+,MLT1D,LTR,ERVL-MaLR,5,505,0,104326626,104327056 +5 + chr10 104351591 104351927 chr10,104351353,104352136,+,L1ME3G,LINE,L1,4630,5398,-748,104346724,104352884 -5 + chr10 104353118 104353133 chr10,104352603,104353133,+,L1ME5,LINE,L1,5609,6185,-9,104346995,104353142 -4 + chr10 104474951 104475082 chr10,104474951,104475082,-,FLAM_A,SINE,Alu,-10,132,2,104474941,104475083 +6 - chr10 104475142 104475381 chr10,104475142,104475381,+,MER102b,DNA,hAT-Charlie,31,272,-69,104475112,104475450 -6 + chr10 104475471 104475653 chr10,104475471,104475773,+,L3,LINE,CR1,3782,4092,-7,104471690,104475780 -2 + chr10 104616678 104616973 chr10,104616678,104617175,+,MamRep605,LTR?,LTR?,202,738,-111,104616477,104617286 +5 + chr10 104664943 104665024 chr10,104664943,104665024,-,L2c,LINE,L2,-305,3082,3000,104664638,104668023 +6 - chr10 106157867 106157964 chr10,106157867,106157964,-,MIR3,SINE,MIR,-13,195,88,106157854,106158051 -6 - chr10 106163348 106163830 chr10,106161572,106164033,+,L1M4b,LINE,L1,2,2530,-4337,106161571,106168370 +1 + chr10 106183879 106183898 chr10,106183879,106184128,+,MIRb,SINE,MIR,11,260,-8,106183869,106184136 +4 + chr10 106184536 106184594 chr10,106184536,106184640,+,LTR88c,LTR,Gypsy?,1,113,-749,106184536,106185389 +4 + chr10 106187529 106187795 chr10,106187495,106187806,-,AluSc8,SINE,Alu,0,311,1,106187495,106187806 -5 - chr10 106188564 106188722 chr10,106188564,106188771,+,MLT1A0,LTR,ERVL-MaLR,161,365,0,106188404,106188771 +5 + chr10 107757833 107758068 chr10,107756725,107758431,+,L1ME3,LINE,L1,4323,6153,-9,107752403,107758440 -5 + chr10 107812817 107812906 chr10,107812817,107812965,-,MER5A,DNA,hAT-Charlie,-31,158,7,107812786,107812971 +2 - chr10 107844449 107844554 chr10,107844449,107844554,-,MIRb,SINE,MIR,-144,124,17,107844305,107844570 +6 - chr10 107859195 107859227 chr10,107859195,107859366,-,LTR16,LTR,ERVL,-47,391,210,107859148,107859575 +2 - chr10 107871682 107871753 chr10,107871682,107873033,+,MER34-int,LTR,ERV1,68,1854,-5064,107871615,107878097 -2 + chr10 107873761 107873852 chr10,107873545,107873894,+,MER34-int,LTR,ERV1,2258,2640,-5567,107871288,107879461 -3 + chr10 107909438 107909488 chr10,107909183,107909488,-,AluSx,SINE,Alu,-10,302,1,107909173,107909488 +4 - chr10 107932238 107932440 chr10,107932184,107932558,-,MLT1B,LTR,ERVL-MaLR,0,390,9,107932184,107932566 +5 - chr10 107947300 107947474 chr10,107947300,107947658,-,MLT1A1,LTR,ERVL-MaLR,0,408,3,107947300,107947660 +2 - chr10 107959053 107959069 chr10,107959053,107959178,+,MIRc,SINE,MIR,16,150,-118,107959038,107959296 -2 + chr10 107962939 107962965 chr10,107962939,107962965,+,(AAGAA)n,Simple_repeat,Simple_repeat,1,27,0,107962939,107962965 -6 + chr10 107964440 107964518 chr10,107964440,107964560,+,LTR16E1,LTR,ERVL,131,252,-286,107964310,107964846 -2 + chr10 107968355 107968401 chr10,107968341,107968401,+,Tigger5b,DNA,TcMar-Tigger,413,472,0,107967929,107968401 -4 + chr10 108001011 108001318 chr10,108001010,108001318,-,AluSc,SINE,Alu,0,309,1,108001010,108001318 +5 - chr10 108038612 108038719 chr10,108038590,108038811,-,L2a,LINE,L2,-1344,2075,1836,108037246,108040646 +5 - chr10 108039845 108040159 chr10,108039726,108040159,-,LTR10B1,LTR,ERV1,-14,533,1,108039712,108040159 +5 - chr10 108040159 108040200 chr10,108040159,108040200,+,MADE1,DNA,TcMar-Mariner,39,79,-1,108040121,108040201 -6 + chr10 108040213 108040498 chr10,108040213,108040571,+,MLT1A1,LTR,ERVL-MaLR,1,401,-7,108040213,108040578 -5 + chr10 108040632 108040686 chr10,108040632,108040686,-,MIRb,SINE,MIR,-29,239,188,108040603,108040873 +6 - chr10 108046446 108046560 chr10,108046378,108046808,+,MLT2B1,LTR,ERVL,3,446,-74,108046376,108046882 -3 + chr10 108046687 108046784 chr10,108046378,108046808,+,MLT2B1,LTR,ERVL,3,446,-74,108046376,108046882 -3 + chr10 108111497 108111602 chr10,108111360,108113455,-,MER66-int,LTR,ERV1,0,6676,4551,108111360,108118005 +1 - chr10 108548078 108548357 chr10,108548078,108548366,+,AluSx,SINE,Alu,1,288,-24,108548078,108548390 -2 + chr10 108761569 108761603 chr10,108761514,108761603,-,MER91A,DNA,hAT-Tip100,-90,106,2,108761424,108761604 -2 - chr10 108838953 108839237 chr10,108838780,108839237,-,MER61C,LTR,ERV1,0,428,1,108838780,108839237 -2 - chr10 108839327 108839363 chr10,108839327,108839431,+,L2c,LINE,L2,3283,3406,-20,108836045,108839451 +5 + chr10 109945614 109945686 chr10,109945614,109945686,-,MamTip2,DNA,hAT-Tip100,-232,73,2,109945382,109945687 +6 - chr10 109946034 109946125 chr10,109946034,109946125,+,Chap1_Mam,DNA,hAT-Charlie,1,89,-253,109946034,109946378 -6 + chr10 109946142 109946295 chr10,109946142,109946736,+,MLT1K,LTR,ERVL-MaLR,1,587,-8,109946142,109946744 -2 + chr10 109947196 109947231 chr10,109947137,109947231,-,MIRc,SINE,MIR,-83,185,84,109947054,109947314 +4 - chr10 109951844 109951965 chr10,109951677,109951988,+,AluSx3,SINE,Alu,2,301,-10,109951676,109951998 -3 + chr10 109953756 109953891 chr10,109953667,109954091,-,MLT1J2,LTR,ERVL-MaLR,0,448,9,109953667,109954099 +1 - chr10 110208411 110208438 chr10,110208411,110208438,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,110208411,110208438 -6 + chr10 110435183 110435207 chr10,110435183,110435227,-,L2b,LINE,L2,-95,3280,3237,110435088,110438463 +2 - chr10 110442348 110442374 chr10,110442348,110442501,+,MIR,SINE,MIR,107,253,-9,110442242,110442510 -2 + chr10 110475140 110475226 chr10,110475140,110475282,+,MIR,SINE,MIR,52,190,-72,110475089,110475354 -2 + chr10 110496171 110496204 chr10,110496171,110496447,+,L2b,LINE,L2,3048,3362,-13,110493124,110496460 -1 + chr10 110869827 110869841 chr10,110869827,110870131,+,AluJb,SINE,Alu,1,303,-9,110869827,110870140 +5 + chr10 110869868 110870131 chr10,110869827,110870131,+,AluJb,SINE,Alu,1,303,-9,110869827,110870140 -5 + chr10 110870132 110870184 chr10,110870132,110870184,-,L2c,LINE,L2,-58,3329,3278,110870074,110873461 +6 - chr10 110870331 110870438 chr10,110870331,110870647,+,AluJb,SINE,Alu,3,309,-3,110870329,110870650 -2 + chr10 110872099 110872134 chr10,110872099,110872134,+,G-rich,Low_complexity,Low_complexity,1,36,0,110872099,110872134 -6 + chr10 110907483 110907540 chr10,110907232,110907540,+,AluJo,SINE,Alu,1,310,-2,110907232,110907542 +1 + chr10 110907540 110907748 chr10,110907540,110907748,-,Charlie2a,DNA,hAT-Charlie,-2658,203,8,110904882,110907755 -6 - chr10 110907775 110908019 chr10,110907775,110908019,+,MER103C,DNA,hAT-Charlie,35,287,-10,110907741,110908029 +6 + chr10 110911007 110911151 chr10,110911007,110911151,+,MIRb,SINE,MIR,104,259,-9,110910904,110911160 +6 + chr10 110911666 110911801 chr10,110911666,110911801,-,MIRb,SINE,MIR,-120,148,4,110911546,110911804 -6 - chr10 110912142 110912173 chr10,110912142,110912173,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,110912142,110912173 +6 + chr10 112406171 112406348 chr10,112406124,112406517,-,MLT1B,LTR,ERVL-MaLR,0,390,1,112406124,112406517 +5 - chr10 112406631 112406674 chr10,112406631,112406883,-,THE1C,LTR,ERVL-MaLR,0,375,128,112406631,112407010 +2 - chr10 112408584 112408613 chr10,112408584,112408613,+,(TGTT)n,Simple_repeat,Simple_repeat,1,29,0,112408584,112408613 -6 + chr10 112412600 112412648 chr10,112412600,112412683,+,MamTip2,DNA,hAT-Tip100,71,150,-155,112412530,112412838 -2 + chr10 112418784 112418848 chr10,112418603,112418966,-,Tigger2a,DNA,TcMar-Tigger,-72,362,1,112418531,112418966 +3 - chr10 112671853 112671888 chr10,112671853,112671888,+,(TTTC)n,Simple_repeat,Simple_repeat,1,36,0,112671853,112671888 -6 + chr10 112671894 112671944 chr10,112671894,112671999,-,L2c,LINE,L2,0,3387,3274,112671894,112675272 +2 - chr10 112823490 112823530 chr10,112823363,112823530,-,UCON5,Unknown,Unknown,-268,168,2,112823095,112823531 -1 - chr10 112823861 112824051 chr10,112823861,112824051,-,MIR3,SINE,MIR,-7,201,11,112823854,112824061 -6 - chr10 112824293 112824561 chr10,112824293,112824561,+,AluSz,SINE,Alu,1,269,-43,112824293,112824604 +6 + chr10 112824689 112824867 chr10,112824689,112824867,+,MIR3,SINE,MIR,33,196,-12,112824657,112824879 +6 + chr10 112824991 112825718 chr10,112824991,112825718,+,MER45C,DNA,hAT-Tip100,1,779,-174,112824991,112825892 +6 + chr10 112825823 112826115 chr10,112825823,112826115,+,MER45B,DNA,hAT-Tip100,715,1040,0,112825109,112826115 +6 + chr10 112826901 112826927 chr10,112826901,112826927,+,(GAAT)n,Simple_repeat,Simple_repeat,1,26,0,112826901,112826927 +6 + chr10 112831169 112831184 chr10,112831038,112831184,+,L2b,LINE,L2,3245,3426,0,112827794,112831184 +1 + chr10 112890966 112891072 chr10,112890937,112891243,-,AluSz,SINE,Alu,-6,306,1,112890931,112891243 -3 - chr10 112905977 112906008 chr10,112905865,112906008,+,L2a,LINE,L2,3259,3398,-28,112902607,112906036 +2 + chr10 114280734 114281034 chr10,114280734,114281034,-,AluJr,SINE,Alu,-7,305,1,114280727,114281034 +6 - chr10 114424730 114424972 chr10,114424730,114424972,-,L1MA8,LINE,L1,-4,6287,6038,114424726,114431009 +6 - chr10 114424980 114425000 chr10,114424980,114425000,-,MLT1C,LTR,ERVL-MaLR,-342,125,101,114424638,114425100 +6 - chr10 114425000 114425471 chr10,114425000,114425471,-,L1PA16,LINE,L1,0,6166,5667,114425000,114431137 +6 - chr10 114425471 114425561 chr10,114425471,114425561,-,MLT1C,LTR,ERVL-MaLR,-363,104,1,114425108,114425561 +6 - chr10 114426215 114426258 chr10,114426215,114426258,-,MER5A,DNA,hAT-Charlie,-4,185,143,114426211,114426400 +6 - chr10 114426332 114426420 chr10,114426332,114426420,+,MIRb,SINE,MIR,29,120,-148,114426304,114426568 -6 + chr10 114426966 114427040 chr10,114426966,114427040,+,MIRb,SINE,MIR,186,260,-8,114426781,114427048 -6 + chr10 114775992 114776138 chr10,114775992,114776138,+,MamGypsy2-I,LTR,Gypsy,933,1084,-3082,114775060,114779220 +6 + chr10 114777951 114778011 chr10,114777563,114778011,-,L1MEg,LINE,L1,-5728,724,2,114771835,114778012 -2 - chr10 114778081 114778382 chr10,114778081,114778382,+,AluJb,SINE,Alu,1,301,-11,114778081,114778393 +6 + chr10 114778568 114778613 chr10,114778568,114778613,+,(AC)n,Simple_repeat,Simple_repeat,1,45,0,114778568,114778613 +6 + chr10 114778995 114779147 chr10,114778995,114779147,+,MamGypsy2-I,LTR,Gypsy,3910,4070,-96,114775086,114779243 +6 + chr10 114779173 114779392 chr10,114779173,114779392,-,MIR,SINE,MIR,0,262,4,114779173,114779395 -6 - chr10 114779506 114779903 chr10,114779506,114779962,-,L1ME3G,LINE,L1,-155,769,302,114779351,114780263 -5 - chr10 114994657 114994720 chr10,114994578,114994720,+,L3,LINE,CR1,3818,3959,-140,114990761,114994860 +1 + chr10 114995443 114995465 chr10,114995356,114995465,+,L2c,LINE,L2,3250,3361,-26,114992107,114995491 +2 + chr10 116829049 116829401 chr10,116829049,116829401,+,THE1B,LTR,ERVL-MaLR,2,361,-3,116829048,116829404 -6 + chr10 116830388 116830492 chr10,116830388,116830492,+,(AT)n,Simple_repeat,Simple_repeat,1,104,0,116830388,116830492 -6 + chr10 116830492 116830782 chr10,116830492,116830782,+,AluJb,SINE,Alu,1,292,-20,116830492,116830802 -6 + chr10 116830782 116830864 chr10,116830782,116830864,+,(AT)n,Simple_repeat,Simple_repeat,1,84,0,116830782,116830864 -6 + chr10 116830888 116830912 chr10,116830888,116830912,+,(AT)n,Simple_repeat,Simple_repeat,1,24,0,116830888,116830912 -6 + chr10 116830912 116831089 chr10,116830912,116831089,+,Tigger3c,DNA,TcMar-Tigger,438,602,0,116830475,116831089 -6 + chr10 116831094 116831186 chr10,116831094,116831186,+,MIR,SINE,MIR,149,248,-14,116830946,116831200 -6 + chr10 116831245 116831521 chr10,116831245,116831521,-,L2b,LINE,L2,-180,3195,2920,116831065,116834440 +6 - chr10 116832163 116832464 chr10,116832163,116832464,-,AluSc,SINE,Alu,-7,302,2,116832156,116832465 +6 - chr10 116832616 116832704 chr10,116832616,116832704,-,L2c,LINE,L2,-14,3373,3288,116832602,116835991 +6 - chr10 116832797 116832863 chr10,116832797,116832863,-,MIR,SINE,MIR,-16,246,182,116832781,116833044 +6 - chr10 116835198 116835257 chr10,116835162,116835275,+,MIRb,SINE,MIR,46,157,-111,116835117,116835386 -3 + chr10 117159578 117159709 chr10,117159578,117159709,+,Eulor2A,DNA?,DNA?,5,121,-152,117159574,117159861 -6 + chr10 117160566 117160601 chr10,117160566,117160601,+,(AAAAAC)n,Simple_repeat,Simple_repeat,1,35,0,117160566,117160601 -6 + chr10 117239600 117239639 chr10,117239412,117239639,-,MIR,SINE,MIR,-8,254,9,117239404,117239647 +5 - chr10 117425194 117425282 chr10,117425021,117425282,+,MLT1K,LTR,ERVL-MaLR,34,395,-200,117424988,117425482 +1 + chr10 117436229 117436324 chr10,117436229,117436410,+,MIRc,SINE,MIR,1,186,-82,117436229,117436492 +4 + chr10 117473215 117473422 chr10,117473164,117473518,-,MLT1K,LTR,ERVL-MaLR,0,595,229,117473164,117473746 +5 - chr10 117476501 117476536 chr10,117476501,117476536,+,(GTGT)n,Simple_repeat,Simple_repeat,1,35,0,117476501,117476536 -6 + chr10 117476536 117476546 chr10,117476536,117476546,+,(GTGG)n,Simple_repeat,Simple_repeat,1,45,0,117476536,117476546 -6 + chr10 117476618 117476651 chr10,117476618,117476651,+,(AAAC)n,Simple_repeat,Simple_repeat,1,33,0,117476618,117476651 -6 + chr10 117484387 117484698 chr10,117484387,117484698,-,MLT1J,LTR,ERVL-MaLR,-200,312,1,117484187,117484698 +6 - chr10 117484700 117484902 chr10,117484700,117484902,+,MER103C,DNA,hAT-Charlie,79,277,-20,117484622,117484922 -6 + chr10 117484988 117485186 chr10,117484988,117485186,-,L2b,LINE,L2,-3,3372,3152,117484985,117488337 +6 - chr10 117485552 117485850 chr10,117485552,117485850,+,AluSx1,SINE,Alu,1,299,-13,117485552,117485863 -6 + chr10 117486084 117486560 chr10,117486084,117486560,-,MLT1C,LTR,ERVL-MaLR,0,467,1,117486084,117486560 +1 - chr10 117487074 117487111 chr10,117487074,117487111,+,L2b,LINE,L2,3081,3120,-267,117483994,117487378 -6 + chr10 117487111 117487229 chr10,117487111,117487229,-,MLT1C,LTR,ERVL-MaLR,0,467,349,117487111,117487577 +6 - chr10 117487229 117487529 chr10,117487229,117487529,-,AluSx,SINE,Alu,-13,299,1,117487216,117487529 +6 - chr10 117487529 117487877 chr10,117487529,117487877,-,MLT1C,LTR,ERVL-MaLR,-119,348,2,117487410,117487878 +6 - chr10 117487877 117487962 chr10,117487877,117487962,+,L2b,LINE,L2,3121,3205,-182,117484757,117488144 -6 + chr10 117488079 117488138 chr10,117488079,117488138,-,Tigger13a,DNA,TcMar-Tigger,0,771,713,117488079,117488850 +6 - chr10 117488466 117488497 chr10,117488466,117488497,+,MamRep605,LTR?,LTR?,22,49,-800,117488445,117489297 -6 + chr10 117488497 117488795 chr10,117488497,117488795,-,AluSx,SINE,Alu,-13,299,2,117488484,117488796 +6 - chr10 117488795 117488887 chr10,117488795,117488887,+,MamRep605,LTR?,LTR?,50,128,-721,117488746,117489608 -6 + chr10 117488945 117489107 chr10,117488945,117489107,+,(TGTGTG)n,Simple_repeat,Simple_repeat,1,163,0,117488945,117489107 -6 + chr10 117489458 117489660 chr10,117489458,117489660,+,MIR,SINE,MIR,44,251,-11,117489415,117489671 -6 + chr10 117489737 117489856 chr10,117489737,117489856,+,L2b,LINE,L2,3252,3375,0,117486486,117489856 -6 + chr10 117490210 117490365 chr10,117490210,117490365,+,MER5A1,DNA,hAT-Charlie,1,159,-7,117490210,117490372 +6 + chr10 117490210 117490365 chr10,117490210,117490365,+,MER5A1,DNA,hAT-Charlie,1,159,-7,117490210,117490372 -6 + chr10 117492021 117492109 chr10,117491808,117492291,-,LTR33,LTR,ERVL,-7,508,22,117491801,117492312 +3 - chr10 117494569 117494601 chr10,117494459,117494601,-,L1ME4a,LINE,L1,-4,6120,5968,117494455,117500568 +4 - chr10 117494642 117494688 chr10,117494642,117494739,-,L2a,LINE,L2,-2,3424,3315,117494640,117498053 +1 - chr10 117542302 117542494 chr10,117542302,117542494,+,GA-rich,Low_complexity,Low_complexity,1,192,0,117542302,117542494 -1 + chr10 117566016 117566053 chr10,117565882,117566053,+,MIR3,SINE,MIR,3,170,-38,117565880,117566091 -4 + chr10 117572296 117572355 chr10,117572048,117572355,-,LTR16,LTR,ERVL,-21,417,96,117572027,117572450 +4 - chr10 117736203 117736267 chr10,117735876,117736267,+,L2a,LINE,L2,2970,3426,0,117732907,117736267 +2 + chr10 117826037 117826179 chr10,117826037,117826204,-,Charlie18a,DNA,hAT-Charlie,0,342,175,117826037,117826378 +2 - chr10 118049512 118049556 chr10,118049464,118049556,-,MIR,SINE,MIR,-75,187,88,118049389,118049643 -2 - chr10 118053276 118053464 chr10,118053270,118053464,-,MLT1A0,LTR,ERVL-MaLR,-58,307,109,118053212,118053572 -2 - chr10 118053762 118053826 chr10,118053762,118053826,+,MamRTE1,LINE,RTE-BovB,2717,2779,-1033,118051046,118054859 +6 + chr10 118054146 118054222 chr10,118054146,118054222,+,MIRc,SINE,MIR,189,264,-4,118053958,118054226 +6 + chr10 118055106 118055139 chr10,118055106,118055139,+,(AGCAGT)n,Simple_repeat,Simple_repeat,1,35,0,118055106,118055139 +6 + chr10 118055452 118055669 chr10,118055452,118055669,+,MamGypLTR2b,LTR,Gypsy,677,922,0,118054776,118055669 +6 + chr10 118055870 118056000 chr10,118055870,118056000,+,L3,LINE,CR1,3401,3531,-568,118052470,118056568 +6 + chr10 118056008 118056225 chr10,118056008,118056474,+,L2,LINE,L2,1581,2105,-1314,118054428,118057788 +5 + chr10 118098221 118098296 chr10,118098221,118098296,+,MER5A,DNA,hAT-Charlie,116,188,-1,118098106,118098297 +6 + chr10 118099183 118099239 chr10,118099183,118099239,+,(AAC)n,Simple_repeat,Simple_repeat,1,56,0,118099183,118099239 +6 + chr10 118099256 118099442 chr10,118099256,118099442,-,MIR,SINE,MIR,-13,249,52,118099243,118099493 -6 - chr10 118099547 118099668 chr10,118099547,118099668,-,MIR,SINE,MIR,0,268,112,118099547,118099779 -6 - chr10 118205047 118205165 chr10,118205047,118205165,-,7SK,RNA,RNA,-202,129,8,118204845,118205172 -6 - chr10 118205198 118205355 chr10,118205198,118205355,+,MER124,DNA?,DNA?,33,188,-209,118205166,118205564 +6 + chr10 118205434 118205454 chr10,118205434,118205532,-,L4_A_Mam,LINE,RTE-X,-90,4900,4798,118205344,118210329 -4 - chr10 118206631 118206691 chr10,118206631,118206691,+,(TA)n,Simple_repeat,Simple_repeat,1,60,0,118206631,118206691 +5 + chr10 118207584 118207740 chr10,118207584,118207740,+,MIR3,SINE,MIR,14,151,-57,118207571,118207797 +6 + chr10 118207740 118207948 chr10,118207740,118207948,+,MER58A,DNA,hAT-Charlie,2,221,-3,118207739,118207951 +5 + chr10 118207948 118208006 chr10,118207948,118208006,+,MIR3,SINE,MIR,152,205,-3,118207797,118208009 +6 + chr10 118209566 118209599 chr10,118209566,118209599,+,(TTTA)n,Simple_repeat,Simple_repeat,1,33,0,118209566,118209599 +6 + chr10 118209695 118209810 chr10,118209695,118209810,+,A-rich,Low_complexity,Low_complexity,1,114,0,118209695,118209810 +6 + chr10 118247699 118247873 chr10,118247531,118247920,+,MLT1B,LTR,ERVL-MaLR,1,390,0,118247531,118247920 +5 + chr10 118267418 118267641 chr10,118267291,118267641,-,L1MB5,LINE,L1,0,6174,5834,118267291,118273474 -2 - chr10 118364912 118365085 chr10,118364912,118365085,+,L2a,LINE,L2,3253,3425,-1,118361660,118365086 +6 + chr10 118692655 118692713 chr10,118692655,118692713,+,L1ME4c,LINE,L1,311,368,-462,118692345,118693175 -6 + chr10 118692934 118693037 chr10,118692934,118693037,-,MER117,DNA,hAT-Charlie,-81,116,7,118692853,118693043 +6 - chr10 118693139 118693209 chr10,118693139,118693209,+,MER5A,DNA,hAT-Charlie,100,167,-22,118693040,118693231 -6 + chr10 118693161 118693241 chr10,118693161,118693241,-,MER5A,DNA,hAT-Charlie,-109,80,1,118693052,118693241 +6 - chr10 119335921 119335940 chr10,119335823,119335940,+,MIRb,SINE,MIR,69,186,-82,119335755,119336022 -4 + chr10 119335966 119336005 chr10,119335966,119336005,+,(TCATCG)n,Simple_repeat,Simple_repeat,1,39,0,119335966,119336005 -6 + chr10 120598049 120598177 chr10,120598049,120598177,-,MIRb,SINE,MIR,-54,154,25,120597995,120598201 -6 - chr10 120599386 120599630 chr10,120599386,120599630,-,MIR,SINE,MIR,-2,260,14,120599384,120599643 -6 - chr10 120599776 120599927 chr10,120599776,120599927,-,HAL1,LINE,L1,-2330,177,19,120597446,120599945 -6 - chr10 120599995 120600104 chr10,120599995,120600104,+,L2a,LINE,L2,3308,3425,-1,120596688,120600105 +6 + chr10 120762332 120762630 chr10,120762332,120762630,+,AluSg,SINE,Alu,5,300,-10,120762328,120762640 -6 + chr10 120762786 120762830 chr10,120762786,120762830,-,L1M5,LINE,L1,-232,5892,5850,120762554,120768679 +6 - chr10 120762830 120763284 chr10,120762830,120763284,+,LTR40b,LTR,ERVL,1,462,0,120762830,120763284 -6 + chr10 120763284 120763394 chr10,120763284,120763394,-,L1M5,LINE,L1,-275,5849,5734,120763009,120769127 +6 - chr10 120791531 120791597 chr10,120791531,120791671,+,MIRb,SINE,MIR,73,212,-56,120791459,120791727 -2 + chr10 120791728 120791926 chr10,120791676,120791947,+,LTR104_Mam,LTR,Gypsy,503,801,-708,120791174,120792655 -3 + chr10 120809135 120809266 chr10,120808978,120809292,+,AluSx,SINE,Alu,1,311,-1,120808978,120809293 -1 + chr10 120820604 120820905 chr10,120820604,120820905,-,AluJo,SINE,Alu,-12,300,1,120820592,120820905 -6 - chr10 120824413 120824440 chr10,120824413,120824628,+,Chap1_Mam,DNA,hAT-Charlie,7,240,-102,120824407,120824730 +5 + chr10 120825215 120825306 chr10,120825215,120825306,+,MER94,DNA,hAT-Blackjack,36,132,-2,120825180,120825308 +6 + chr10 120830219 120830259 chr10,120830196,120830259,-,LTR89,LTR,ERVL?,-260,619,555,120829936,120830813 +4 - chr10 120830445 120830554 chr10,120830445,120830554,+,MER5A,DNA,hAT-Charlie,56,166,-23,120830390,120830577 -6 + chr10 120880463 120880667 chr10,120880379,120880667,+,AluSz,SINE,Alu,3,293,-19,120880377,120880686 -1 + chr10 120925956 120926016 chr10,120925956,120926016,+,MIRc,SINE,MIR,81,155,-113,120925876,120926129 -6 + chr10 120926223 120926257 chr10,120926223,120926257,+,A-rich,Low_complexity,Low_complexity,1,34,0,120926223,120926257 -6 + chr10 120984966 120985325 chr10,120984932,120985325,-,MLT1B,LTR,ERVL-MaLR,-17,373,1,120984915,120985325 +5 - chr10 121178700 121178972 chr10,121178220,121180688,-,L1MC5,LINE,L1,-185,9119,6733,121178035,121187420 -1 - chr10 121184322 121184509 chr10,121184322,121184509,-,Tigger20a,DNA,TcMar-Tigger,-437,536,361,121183885,121184869 -6 - chr10 121184643 121184686 chr10,121184643,121184686,+,(CCTTC)n,Simple_repeat,Simple_repeat,1,44,0,121184643,121184686 +6 + chr10 121185366 121185394 chr10,121185366,121185394,+,(CACT)n,Simple_repeat,Simple_repeat,1,28,0,121185366,121185394 +6 + chr10 121185485 121185627 chr10,121185485,121185627,-,MIRb,SINE,MIR,-45,223,75,121185440,121185701 -6 - chr10 121615425 121615449 chr10,121615423,121615449,+,(GTTTT)n,Simple_repeat,Simple_repeat,1,26,0,121615423,121615449 -5 + chr10 121736303 121736371 chr10,121736176,121736371,-,MIRc,SINE,MIR,-37,231,27,121736139,121736397 -1 - chr10 121736791 121736832 chr10,121736684,121736832,-,Tigger15a,DNA,TcMar-Tigger,-554,161,8,121736130,121736839 -2 - chr10 121928614 121928634 chr10,121928614,121928690,-,MIRc,SINE,MIR,-72,158,81,121928542,121928770 -4 - chr10 121956855 121956932 chr10,121956855,121956932,+,MADE2,DNA,TcMar-Mariner,3,79,-1,121956853,121956933 +6 + chr10 121966248 121966362 chr10,121966248,121966362,-,L2c,LINE,L2,-231,3156,3032,121966017,121969393 -6 - chr10 121966546 121966597 chr10,121966546,121966597,-,MER5A,DNA,hAT-Charlie,-23,166,113,121966523,121966709 -6 - chr10 121966767 121966937 chr10,121966767,121966937,+,L3,LINE,CR1,3778,3956,-143,121962990,121967080 +6 + chr10 121967201 121967497 chr10,121967201,121967497,-,AluJb,SINE,Alu,-15,297,1,121967186,121967497 -6 - chr10 123488923 123489123 chr10,123488729,123489123,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,123488729,123489123 +2 + chr10 123489123 123489237 chr10,123489123,123489237,+,MLT1L,LTR,ERVL-MaLR,289,401,-209,123488835,123489446 +6 + chr10 123489271 123489336 chr10,123489271,123489670,-,L1MB7,LINE,L1,-1,6183,5782,123489270,123495451 -5 - chr10 123776670 123776894 chr10,123776443,123776894,+,L1ME4c,LINE,L1,384,825,-5,123776060,123776899 +1 + chr10 123776900 123776929 chr10,123776900,123776929,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,30,0,123776900,123776929 +6 + chr10 123931523 123931537 chr10,123931219,123931537,+,MER77B,LTR,ERVL,286,609,-91,123930934,123931628 -4 + chr10 124447617 124447687 chr10,124447617,124447687,+,(GCC)n,Simple_repeat,Simple_repeat,1,75,0,124447617,124447687 +6 + chr10 124448061 124448100 chr10,124448061,124448100,+,(CCT)n,Simple_repeat,Simple_repeat,1,39,0,124448061,124448100 +6 + chr10 124448315 124448390 chr10,124448315,124448390,+,L2c,LINE,L2,3306,3387,0,124445010,124448390 +6 + chr10 124704267 124704331 chr10,124704267,124704931,-,L2a,LINE,L2,-2,3424,2649,124704265,124707579 -4 - chr10 124705572 124705700 chr10,124705405,124705714,+,L2b,LINE,L2,3096,3371,-4,124702310,124705718 +5 + chr10 124917174 124917214 chr10,124917174,124917214,+,(CGC)n,Simple_repeat,Simple_repeat,1,40,0,124917174,124917214 +6 + chr10 124917225 124917259 chr10,124917225,124917259,+,GA-rich,Low_complexity,Low_complexity,1,34,0,124917225,124917259 +6 + chr10 124945204 124945355 chr10,124945080,124945355,-,L1MB5,LINE,L1,-11,6163,5890,124945069,124951244 +5 - chr10 124945409 124945434 chr10,124945409,124945434,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,124945409,124945434 -6 + chr10 124945799 124945909 chr10,124945799,124946088,-,AluJb,SINE,Alu,-14,298,1,124945785,124946088 +2 - chr10 124946309 124946432 chr10,124946135,124946445,+,AluSp,SINE,Alu,1,310,-3,124946135,124946448 -1 + chr10 124997208 124997314 chr10,124997208,124997314,-,MIR,SINE,MIR,-69,139,41,124997139,124997354 -6 - chr10 125574371 125574385 chr10,125573891,125574385,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,125573889,125574385 -1 - chr10 125574474 125574549 chr10,125574474,125574658,-,MIR,SINE,MIR,-16,246,54,125574458,125574711 -4 - chr10 125575025 125575038 chr10,125574897,125575038,+,L2a,LINE,L2,2746,2888,-531,125572152,125575569 +2 + chr10 125575038 125575139 chr10,125575038,125575334,+,AluJo,SINE,Alu,1,309,-3,125575038,125575337 +4 + chr10 125686289 125686434 chr10,125686289,125686434,-,MIRc,SINE,MIR,-98,170,27,125686191,125686460 -6 - chr10 125697529 125697766 chr10,125697364,125697766,+,GA-rich,Low_complexity,Low_complexity,1,415,0,125697364,125697766 +1 + chr10 125697806 125697823 chr10,125697806,125697944,+,MIR,SINE,MIR,3,140,-68,125697804,125698012 +4 + chr10 125698451 125698624 chr10,125698451,125698624,+,MamRTE1,LINE,RTE-BovB,3615,3801,-11,125694837,125698635 +1 + chr10 125698627 125698695 chr10,125698627,125698767,-,Tigger19b,DNA,TcMar-Tigger,0,550,413,125698627,125699179 -4 - chr10 125704187 125704215 chr10,125704176,125704225,+,L2b,LINE,L2,3291,3340,-35,125700886,125704260 -3 + chr10 125705634 125705689 chr10,125705634,125705689,+,UCON105,Unknown,Unknown,171,222,-51,125705464,125705740 -6 + chr10 125706582 125706624 chr10,125706422,125706624,+,L1MC5,LINE,L1,9106,9303,-1,125697317,125706625 +2 + chr10 125706422 125706624 chr10,125706422,125706624,+,L1MC5,LINE,L1,9106,9303,-1,125697317,125706625 -6 + chr10 125706967 125707015 chr10,125706967,125707015,-,MamTip2,DNA,hAT-Tip100,-213,92,44,125706754,125707058 -5 - chr10 125706967 125707015 chr10,125706967,125707015,-,MamTip2,DNA,hAT-Tip100,-213,92,44,125706754,125707058 +5 - chr10 125708631 125709270 chr10,125708631,125709270,+,LTR48,LTR,ERV1,1,644,0,125708631,125709270 +5 + chr10 125709006 125709270 chr10,125708631,125709270,+,LTR48,LTR,ERV1,1,644,0,125708631,125709270 -5 + chr10 125709463 125709584 chr10,125709463,125709584,+,AluJb,SINE,Alu,1,135,-167,125709463,125709751 +6 + chr10 125709463 125709567 chr10,125709463,125709584,+,AluJb,SINE,Alu,1,135,-167,125709463,125709751 -2 + chr10 125711474 125711588 chr10,125711233,125711679,+,MSTB2,LTR,ERVL-MaLR,1,457,0,125711233,125711679 -3 + chr10 125718771 125718791 chr10,125718612,125718791,+,ORSL-2b,DNA,hAT-Tip100,209,377,-131,125718404,125718922 -5 + chr10 125718956 125718981 chr10,125718956,125719049,+,MER5A,DNA,hAT-Charlie,34,124,-65,125718923,125719114 -2 + chr10 125744792 125744890 chr10,125744792,125745165,-,MER44B,DNA,TcMar-Tigger,0,550,136,125744792,125745300 +5 - chr10 125745230 125745521 chr10,125745165,125745521,-,MLT1B,LTR,ERVL-MaLR,0,390,29,125745165,125745549 +5 - chr10 125748815 125748888 chr10,125748804,125748888,-,L1M4,LINE,L1,-1196,4950,4864,125747608,125753751 +5 - chr10 125748983 125749240 chr10,125748983,125749269,+,AluSx1,SINE,Alu,15,304,-8,125748969,125749277 -2 + chr10 125750456 125750482 chr10,125750456,125750575,+,HAL1b,LINE,L1,2021,2156,-265,125748436,125750840 -1 + chr10 125751916 125752110 chr10,125751632,125752271,-,MER77,LTR,ERVL,-218,713,1,125751414,125752271 +1 - chr10 125972188 125972217 chr10,125971963,125972217,+,MIR,SINE,MIR,2,253,-9,125971962,125972226 -5 + chr10 126413869 126414182 chr10,126413822,126414182,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,126413822,126414182 +5 - chr10 126414182 126414229 chr10,126414182,126414229,-,L1M5,LINE,L1,-978,5168,5122,126413204,126419350 +6 - chr10 126414370 126414435 chr10,126414370,126414435,+,L2b,LINE,L2,3313,3374,-1,126411058,126414436 -6 + chr10 126417716 126417808 chr10,126417645,126417907,+,MamRep137,DNA,TcMar-Tigger,195,479,-31,126417451,126417938 -3 + chr10 127001354 127001609 chr10,127001295,127001612,-,L1MC1,LINE,L1,-1,6332,6007,127001294,127007618 +5 - chr10 127014872 127014971 chr10,127014872,127015060,-,MER91A,DNA,hAT-Tip100,-2,194,10,127014870,127015069 +2 - chr10 127015010 127015060 chr10,127014872,127015060,-,MER91A,DNA,hAT-Tip100,-2,194,10,127014870,127015069 +4 - chr10 127015923 127016097 chr10,127015832,127016252,+,L2a,LINE,L2,2966,3422,-4,127012867,127016256 -5 + chr10 127025954 127026052 chr10,127025780,127026086,+,AluSp,SINE,Alu,1,310,-3,127025780,127026089 -5 + chr10 127929432 127929533 chr10,127929432,127929533,-,L2c,LINE,L2,-1,3386,3291,127929431,127932823 +6 - chr10 128319962 128320060 chr10,128319749,128320060,-,AluYb8,SINE,Alu,-7,311,1,128319742,128320060 +4 - chr10 129291331 129291436 chr10,129291232,129291436,-,MIR,SINE,MIR,-30,232,8,129291202,129291443 -2 - chr10 129700214 129700446 chr10,129700214,129700446,-,Tigger8,DNA,TcMar-Tigger,-293,374,116,129699921,129700561 +5 - chr10 130066374 130066493 chr10,130066182,130066493,-,AluJb,SINE,Alu,-7,305,1,130066175,130066493 +5 - chr10 130066638 130066729 chr10,130066638,130066729,-,L3,LINE,CR1,-402,3697,3607,130066236,130070335 +6 - chr10 130068048 130068251 chr10,130068048,130068251,-,LTR33,LTR,ERVL,-310,205,14,130067738,130068264 +6 - chr10 130068255 130068329 chr10,130068255,130068329,+,L1M4,LINE,L1,1158,1236,-6281,130067098,130074610 -6 + chr10 130068329 130068608 chr10,130068329,130068633,+,AluSq2,SINE,Alu,1,305,-8,130068329,130068641 -2 + chr10 130101094 130101211 chr10,130100935,130101232,+,AluSx,SINE,Alu,1,300,-12,130100935,130101244 -3 + chr10 130104179 130104230 chr10,130104179,130104242,+,L2b,LINE,L2,3308,3370,-5,130100872,130104247 -2 + chr10 130104924 130104998 chr10,130104924,130105227,-,AluSz,SINE,Alu,-8,304,1,130104916,130105227 +1 - chr10 130439067 130439089 chr10,130438949,130439130,+,MIRc,SINE,MIR,19,236,-32,130438931,130439162 +1 + chr10 131773432 131773578 chr10,131773432,131773578,+,MER20,DNA,hAT-Charlie,1,149,-70,131773432,131773648 -6 + chr10 131775797 131775844 chr10,131775797,131775844,+,GA-rich,Low_complexity,Low_complexity,1,50,0,131775797,131775844 -6 + chr10 131790106 131790199 chr10,131790106,131790265,-,MLT1I,LTR,ERVL-MaLR,-154,257,95,131789952,131790359 +1 - chr10 131832366 131832425 chr10,131832366,131832425,+,(GGAGC)n,Simple_repeat,Simple_repeat,1,61,0,131832366,131832425 -6 + chr10 131832618 131832986 chr10,131832618,131832986,+,L1MC4,LINE,L1,7544,7960,-82,131825075,131833068 -6 + chr10 131833261 131833452 chr10,131833261,131833452,-,L1MB7,LINE,L1,-17,6167,5979,131833244,131839430 +6 - chr10 131980460 131980591 chr10,131980460,131980591,+,FLAM_C,SINE,Alu,1,131,-12,131980460,131980603 +6 + chr10 131980618 131980648 chr10,131980618,131980648,+,(AT)n,Simple_repeat,Simple_repeat,1,32,0,131980618,131980648 +6 + chr10 131980694 131980867 chr10,131980694,131980867,-,MamRep434,DNA,TcMar-Tigger,-199,227,57,131980495,131980923 -6 - chr10 131996738 131996797 chr10,131996540,131996797,+,L2,LINE,L2,1065,1391,-2028,131995476,131998825 +1 + chr10 131997213 131997312 chr10,131997213,131997312,+,LTR78,LTR,ERV1,1001,1100,-204,131996213,131997516 +6 + chr10 131998001 131998375 chr10,131998001,131998375,-,LTR54,LTR,ERV1,0,510,1,131998001,131998375 -6 - chr10 131998427 131998733 chr10,131998427,131998733,-,AluJr,SINE,Alu,-4,308,2,131998423,131998734 -6 - chr10 131998837 131999084 chr10,131998837,131999084,+,MIR,SINE,MIR,1,253,-9,131998837,131999093 +6 + chr10 131999116 131999263 chr10,131999116,131999263,-,MIRc,SINE,MIR,-82,186,10,131999034,131999272 -6 - chr10 131999686 131999846 chr10,131999686,132000000,+,MER4E1,LTR,ERV1,1,311,-470,131999686,132000470 +5 + chr10 132181349 132181535 chr10,132181349,132181535,+,MIR3,SINE,MIR,18,208,0,132181332,132181535 -6 + chr10 132419093 132419139 chr10,132419093,132419139,+,(GCCCCA)n,Simple_repeat,Simple_repeat,1,47,0,132419093,132419139 +6 + chr10 132420890 132420953 chr10,132420890,132421041,-,L1ME4a,LINE,L1,-4,6120,5960,132420886,132427000 -5 - chr10 132433989 132434348 chr10,132433989,132434348,-,MLT1A0,LTR,ERVL-MaLR,-2,363,1,132433987,132434348 +6 - chr10 132434353 132434691 chr10,132434353,132434769,+,MLT2D,LTR,ERVL,1,525,-31,132434353,132434800 -2 + chr10 132511626 132511922 chr10,132511537,132511922,+,L1ME2,LINE,L1,5595,5985,-179,132505943,132512101 -5 + chr10 132511938 132512107 chr10,132511938,132512107,-,L1MD,LINE,L1,-1877,4269,4094,132510061,132516200 +6 - chr10 132521090 132521267 chr10,132521090,132521267,-,MIRc,SINE,MIR,-75,193,15,132521015,132521281 +6 - chr10 132944131 132944562 chr10,132944131,132944562,-,MER21C,LTR,ERVL,-361,577,10,132943770,132944571 +6 - chr10 132944628 132944968 chr10,132944628,132944968,-,MLT1B,LTR,ERVL-MaLR,0,390,1,132944628,132944968 +6 - chr10 132946205 132946261 chr10,132946205,132946261,-,L2a,LINE,L2,-54,3372,3316,132946151,132949576 +6 - chr10 132961860 132961971 chr10,132961860,132961971,+,(GTGTGA)n,Simple_repeat,Simple_repeat,1,114,0,132961860,132961971 -6 + chr10 132962190 132962237 chr10,132962190,132962659,+,MER66B,LTR,ERV1,1,486,0,132962190,132962659 -1 + chr10 132965824 132965867 chr10,132965824,132965867,+,(GTGTTTACAT)n,Simple_repeat,Simple_repeat,1,43,0,132965824,132965867 +6 + chr10 132965868 132965907 chr10,132965868,132966266,-,L1MC4,LINE,L1,-121,7921,7513,132965747,132973778 -4 - chr10 132971364 132971423 chr10,132971364,132971423,+,(CCCTT)n,Simple_repeat,Simple_repeat,1,62,0,132971364,132971423 +6 + chr10 132974027 132974073 chr10,132974027,132974073,+,(CCAGG)n,Simple_repeat,Simple_repeat,1,47,0,132974027,132974073 +6 + chr10 132975668 132975805 chr10,132975668,132975805,-,HAL1,LINE,L1,-892,1615,1478,132974776,132977282 -6 - chr10 133084473 133084563 chr10,133084473,133084563,+,MER58B,DNA,hAT-Charlie,45,139,-202,133084429,133084765 -6 + chr10 133088333 133088374 chr10,133088333,133088374,+,G-rich,Low_complexity,Low_complexity,1,41,0,133088333,133088374 -6 + chr10 133246624 133246922 chr10,133246624,133246922,+,AluSx3,SINE,Alu,2,304,-7,133246623,133246929 -5 + chr10 133295187 133295282 chr10,133295164,133295459,+,AluJb,SINE,Alu,1,295,-17,133295164,133295476 -5 + chr10 133295364 133295439 chr10,133295164,133295459,+,AluJb,SINE,Alu,1,295,-17,133295164,133295476 -5 + chr10 133324732 133324745 chr10,133324732,133324794,+,(GGCTGG)n,Simple_repeat,Simple_repeat,1,63,0,133324732,133324794 -1 + chr10 133345754 133345797 chr10,133345507,133346114,-,MER4B,LTR,ERV1,0,900,1,133345507,133346114 +5 - chr11 131467 131524 chr11,131384,131804,-,MER1A,DNA,hAT-Charlie,-90,439,1,131294,131804 +3 - chr11 133573 133618 chr11,133516,133618,-,MER8,DNA,TcMar-Tigger,-2,237,137,133514,133754 +5 - chr11 133618 133778 chr11,133618,133813,+,AluJb,SINE,Alu,117,310,-2,133502,133815 -2 + chr11 134890 134947 chr11,134807,135227,-,MER1A,DNA,hAT-Charlie,-90,439,1,134717,135227 +3 - chr11 135175 135227 chr11,134807,135227,-,MER1A,DNA,hAT-Charlie,-90,439,1,134717,135227 +4 - chr11 135512 135592 chr11,135512,135592,+,FLAM_A,SINE,Alu,38,117,-25,135475,135617 -6 + chr11 135594 135860 chr11,135594,135884,+,AluJo,SINE,Alu,44,299,-13,135551,135897 -2 + chr11 138956 138975 chr11,138543,138975,-,MER1A,DNA,hAT-Charlie,-39,490,56,138504,139030 +4 - chr11 139489 139612 chr11,139340,139625,+,AluJb,SINE,Alu,11,294,-18,139330,139643 -1 + chr11 171598 171636 chr11,171551,171636,-,MIRb,SINE,MIR,-86,182,100,171465,171735 -2 - chr11 185961 186136 chr11,185961,186148,-,LTR56,LTR,ERV1,-268,177,1,185693,186148 -5 - chr11 287305 287334 chr11,287048,287379,-,L2a,LINE,L2,-140,3286,2935,286908,290313 -1 - chr11 288020 288214 chr11,287740,288214,-,L2a,LINE,L2,-359,3060,2481,287381,290694 -1 - chr11 288357 288617 chr11,288357,288617,+,MER41G,LTR,ERV1,2,260,-625,288356,289242 +6 + chr11 288667 288794 chr11,288667,288794,+,MER41G,LTR,ERV1,751,885,0,287917,288794 +6 + chr11 310139 310164 chr11,309444,310164,-,LTR30,LTR,ERV1,0,722,1,309444,310164 +5 - chr11 321995 322035 chr11,321995,322035,-,LTR76,LTR,ERV1,-317,358,319,321678,322353 -6 - chr11 322034 322074 chr11,322034,322074,-,LTR76,LTR,ERV1,-317,358,319,321717,322392 -6 - chr11 322151 322190 chr11,322151,322190,-,LTR76,LTR,ERV1,-317,358,320,321834,322509 -5 - chr11 322190 322223 chr11,322190,322262,-,LTR76,LTR,ERV1,-317,358,271,321873,322532 -4 - chr11 322190 322262 chr11,322190,322262,-,LTR76,LTR,ERV1,-317,358,271,321873,322532 +6 - chr11 322229 322269 chr11,322229,322269,-,LTR76,LTR,ERV1,-317,358,319,321912,322587 +6 - chr11 322346 322386 chr11,322346,322386,-,LTR76,LTR,ERV1,-317,358,319,322029,322704 +6 - chr11 322385 322425 chr11,322385,322425,-,LTR76,LTR,ERV1,-317,358,319,322068,322743 -6 - chr11 322385 322400 chr11,322385,322425,-,LTR76,LTR,ERV1,-317,358,319,322068,322743 +2 - chr11 322557 322580 chr11,322541,322580,-,LTR76,LTR,ERV1,-317,358,320,322224,322899 +4 - chr11 322580 322727 chr11,322580,322928,-,LTR76,LTR,ERV1,-317,358,1,322263,322928 +1 - chr11 324111 324821 chr11,324060,324821,-,HERV3-int,LTR,ERV1,-3386,5040,4262,320674,329082 -2 - chr11 324821 325631 chr11,324821,325786,-,LTR13A,LTR,ERVK,0,966,1,324821,325786 -5 - chr11 325703 325786 chr11,324821,325786,-,LTR13A,LTR,ERVK,0,966,1,324821,325786 +5 - chr11 327536 327730 chr11,327536,327730,+,MER33,DNA,hAT-Charlie,27,212,-112,327510,327842 +6 + chr11 327734 327885 chr11,327734,327885,+,AluJb,SINE,Alu,135,291,-21,327600,327906 +6 + chr11 329104 329214 chr11,328904,329214,-,AluY,SINE,Alu,-1,310,1,328903,329214 -2 - chr11 329236 329453 chr11,329236,329833,+,LTR71B,LTR,ERV1,1,610,0,329236,329833 +5 + chr11 329983 330122 chr11,329940,330140,-,AluJb,SINE,Alu,0,312,124,329940,330263 -5 - chr11 333192 333228 chr11,333153,333228,+,MLT1I,LTR,ERVL-MaLR,1,79,-332,333153,333560 +1 + chr11 333361 333408 chr11,333361,333408,+,MLT1I,LTR,ERVL-MaLR,364,411,0,332998,333408 +6 + chr11 333416 333526 chr11,333416,333526,+,L2,LINE,L2,679,795,-2624,332738,336150 +6 + chr11 333534 333622 chr11,333534,333622,-,L1M4,LINE,L1,-3612,2534,2444,329922,336065 -6 - chr11 462930 463041 chr11,462886,463192,+,AluSc,SINE,Alu,1,307,-2,462886,463194 -5 + chr11 463348 463442 chr11,463215,463442,-,AluY,SINE,Alu,0,311,83,463215,463524 +4 - chr11 463549 463845 chr11,463549,463845,-,AluY,SINE,Alu,-15,296,1,463534,463845 +6 - chr11 463847 463899 chr11,463847,463955,-,MamRep1151,LTR?,LTR?,-68,641,521,463779,464475 +1 - chr11 529154 529192 chr11,529092,529192,-,MIRc,SINE,MIR,-61,207,95,529031,529286 -2 - chr11 558440 558547 chr11,558440,558547,+,G-rich,Low_complexity,Low_complexity,1,110,0,558440,558547 +6 + chr11 559779 559924 chr11,559770,559924,-,AluJr,SINE,Alu,-23,289,137,559747,560060 -2 - chr11 565660 565737 chr11,565655,565737,-,MER30,DNA,hAT-Charlie,-141,89,1,565514,565737 +5 - chr11 566635 566937 chr11,566635,566937,-,AluSx1,SINE,Alu,-10,302,1,566625,566937 +6 - chr11 665910 666095 chr11,665858,666095,+,L1MEg,LINE,L1,386,613,-5523,665473,671618 +1 + chr11 666440 666490 chr11,666440,666726,+,AluSc8,SINE,Alu,1,302,-9,666440,666735 +4 + chr11 708709 708833 chr11,708709,708833,+,MER115,DNA,hAT-Tip100,292,423,-270,708418,709103 -6 + chr11 778113 778285 chr11,778084,778379,-,AluSz,SINE,Alu,-5,307,1,778079,778379 -5 - chr11 781645 781718 chr11,781481,781718,-,MER2,DNA,TcMar-Tigger,-88,257,2,781393,781719 -1 - chr11 784154 784297 chr11,784154,784462,+,AluSz,SINE,Alu,1,299,-13,784154,784475 +5 + chr11 830650 830688 chr11,830650,830688,+,(CTGGAG)n,Simple_repeat,Simple_repeat,1,38,0,830650,830688 -6 + chr11 857400 857702 chr11,857400,857702,-,AluY,SINE,Alu,-10,301,1,857390,857702 +6 - chr11 1053266 1053304 chr11,1053266,1053304,+,(CTCCC)n,Simple_repeat,Simple_repeat,1,39,0,1053266,1053304 +6 + chr11 1053937 1054071 chr11,1053937,1054071,+,(ACCCTA)n,Simple_repeat,Simple_repeat,1,139,0,1053937,1054071 +6 + chr11 1055087 1055209 chr11,1055087,1055209,+,Charlie1a,DNA,hAT-Charlie,1,122,-1333,1055087,1056542 +6 + chr11 1055653 1055749 chr11,1055653,1055749,+,AluJb,SINE,Alu,211,310,-2,1055443,1055751 +5 + chr11 1092844 1092887 chr11,1092816,1092887,-,OldhAT1,DNA,hAT-Ac,-112,2736,2666,1092704,1095552 -2 - chr11 1092987 1093031 chr11,1092987,1093031,+,(CCA)n,Simple_repeat,Simple_repeat,1,44,0,1092987,1093031 +6 + chr11 1310271 1310707 chr11,1310271,1310793,+,MER41C,LTR,ERV1,7,521,0,1310265,1310793 +5 + chr11 1598270 1598315 chr11,1598270,1598315,+,(GGAGCA)n,Simple_repeat,Simple_repeat,1,48,0,1598270,1598315 +6 + chr11 1598729 1599080 chr11,1598729,1599080,-,MSTB,LTR,ERVL-MaLR,0,426,53,1598729,1599132 -6 - chr11 1599080 1599184 chr11,1599080,1599757,+,L1PA16,LINE,L1,5372,6025,-141,1593709,1599898 +5 + chr11 1663311 1663343 chr11,1663291,1663556,-,MLT1J,LTR,ERVL-MaLR,-33,479,219,1663258,1663774 +1 - chr11 1688297 1688329 chr11,1688083,1688348,+,MLT1J,LTR,ERVL-MaLR,219,479,-33,1687865,1688381 +1 + chr11 1761523 1761729 chr11,1761523,1761729,+,L2,LINE,L2,2396,2597,-822,1759128,1762551 +6 + chr11 1763728 1763749 chr11,1763728,1763780,+,(GGCCCC)n,Simple_repeat,Simple_repeat,1,53,0,1763728,1763780 -1 + chr11 1776930 1776987 chr11,1776538,1776987,-,MLT1D,LTR,ERVL-MaLR,-34,471,2,1776504,1776988 +5 - chr11 1902647 1902724 chr11,1902646,1903210,-,MER41A,LTR,ERV1,0,554,1,1902646,1903210 -1 - chr11 1903104 1903210 chr11,1902646,1903210,-,MER41A,LTR,ERV1,0,554,1,1902646,1903210 -1 - chr11 1903210 1903256 chr11,1903210,1903445,-,AluJo,SINE,Alu,-94,218,1,1903116,1903445 -4 - chr11 1985443 1985513 chr11,1985369,1985513,+,MIR,SINE,MIR,2,144,-118,1985368,1985631 -4 + chr11 1996679 1996712 chr11,1996679,1996712,+,(CGCCT)n,Simple_repeat,Simple_repeat,1,34,0,1996679,1996712 -6 + chr11 2328829 2329037 chr11,2328829,2329037,-,MLT1A1-int,LTR,ERVL-MaLR,-880,507,282,2327949,2329318 +6 - chr11 2329214 2329278 chr11,2329214,2329278,+,MLT1J2,LTR,ERVL-MaLR,349,411,0,2328866,2329278 -6 + chr11 2329498 2329626 chr11,2329498,2329626,+,MLT1J2-int,LTR,ERVL-MaLR,1167,1303,-84,2328332,2329710 -6 + chr11 2329668 2329774 chr11,2329668,2329811,+,MLT1J2,LTR,ERVL-MaLR,21,158,-290,2329648,2330101 -2 + chr11 2334911 2335018 chr11,2334598,2335018,-,L1M5,LINE,L1,-1276,4870,4423,2333322,2339440 +4 - chr11 2608328 2608474 chr11,2608070,2608474,-,L1MB7,LINE,L1,-2444,4562,4151,2605626,2612624 +5 - chr11 2608474 2608788 chr11,2608474,2608788,-,AluJr4,SINE,Alu,-13,299,1,2608461,2608788 +6 - chr11 2608788 2610716 chr11,2608788,2610716,-,L1MB7,LINE,L1,-2856,4150,2549,2605932,2613264 +6 - chr11 2610716 2610745 chr11,2610716,2610745,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,2610716,2610745 -6 + chr11 2610745 2610813 chr11,2610745,2610813,-,L1MB7,LINE,L1,-795,2721,2646,2609950,2613458 +6 - chr11 2610891 2610971 chr11,2610891,2610971,+,L1M4,LINE,L1,2522,2598,-3548,2608370,2614519 -6 + chr11 2610997 2611212 chr11,2610997,2611212,-,L1M4a2,LINE,L1,-3610,2604,2423,2607387,2613634 +6 - chr11 2611212 2611511 chr11,2611212,2611511,-,AluSz,SINE,Alu,-5,307,1,2611207,2611511 +6 - chr11 2611511 2612004 chr11,2611511,2612004,-,L1M4a2,LINE,L1,0,2724,2151,2611511,2614154 +6 - chr11 2612095 2612394 chr11,2612095,2612394,+,MER1B,DNA,hAT-Charlie,1,338,-1,2612095,2612395 -6 + chr11 2612416 2613675 chr11,2612416,2613675,-,L1M4a2,LINE,L1,-1185,1539,77,2611231,2613751 +6 - chr11 2613688 2614092 chr11,2613688,2614092,-,L1MC5a,LINE,L1,-1877,900,477,2611811,2614568 +6 - chr11 2614373 2614426 chr11,2614373,2614426,-,L1MB5,LINE,L1,-38,6136,6084,2614335,2620509 +6 - chr11 2614421 2616947 chr11,2614421,2616947,-,L1M4,LINE,L1,-1031,5115,2575,2613390,2619521 +6 - chr11 2617009 2618208 chr11,2617009,2618208,-,L1MA9,LINE,L1,-82,6466,5195,2616927,2623402 +6 - chr11 2618208 2618419 chr11,2618208,2618419,-,MER30,DNA,hAT-Charlie,0,230,4,2618208,2618422 +6 - chr11 2618419 2619848 chr11,2618419,2619848,-,L1MA9,LINE,L1,-1182,5194,3727,2617237,2623574 +6 - chr11 2619852 2620211 chr11,2619852,2620211,-,L1PA16,LINE,L1,-6,6160,5830,2619846,2626040 +6 - chr11 2620211 2620515 chr11,2620211,2620515,-,AluSp,SINE,Alu,-8,305,1,2620203,2620515 +6 - chr11 2620515 2620963 chr11,2620515,2620963,-,L1PA16,LINE,L1,-326,5829,5422,2620189,2626384 +6 - chr11 2620963 2621277 chr11,2620963,2621277,-,AluSx1,SINE,Alu,0,312,1,2620963,2621277 +6 - chr11 2621277 2621550 chr11,2621277,2621550,-,L1PA16,LINE,L1,-734,5421,5151,2620543,2626700 +6 - chr11 2621518 2622705 chr11,2621518,2622705,-,L1MA9,LINE,L1,-2629,3750,2213,2618889,2624917 +6 - chr11 2622710 2622962 chr11,2622710,2622962,-,L1MC1,LINE,L1,-1,6332,6077,2622709,2629038 +6 - chr11 2622962 2623326 chr11,2622962,2623326,+,MSTA,LTR,ERVL-MaLR,1,426,-2,2622962,2623328 -6 + chr11 2623326 2623839 chr11,2623326,2623839,-,L1MC1,LINE,L1,-257,6076,5586,2623069,2629424 +6 - chr11 2623846 2624541 chr11,2623846,2624541,-,L1MC,LINE,L1,-625,5677,5029,2623221,2629569 +6 - chr11 2624561 2625253 chr11,2624561,2625253,-,L1MB3,LINE,L1,-4,6179,5480,2624557,2630732 +6 - chr11 2625261 2625443 chr11,2625261,2625443,-,AluJr,SINE,Alu,-23,289,116,2625238,2625558 +6 - chr11 2625443 2625578 chr11,2625443,2625578,-,L1MB3,LINE,L1,-710,5470,5331,2624733,2630908 +6 - chr11 2625578 2625868 chr11,2625578,2625868,-,AluY,SINE,Alu,-14,297,1,2625564,2625868 +6 - chr11 2625868 2626533 chr11,2625868,2626533,-,L1MB3,LINE,L1,-816,5330,4748,2625052,2631280 +6 - chr11 2626533 2626827 chr11,2626533,2626827,-,AluJb,SINE,Alu,-15,297,1,2626518,2626827 +6 - chr11 2626827 2627179 chr11,2626827,2627179,-,L1MB3,LINE,L1,-1399,4747,4389,2625428,2631567 +6 - chr11 2627175 2627750 chr11,2627175,2627750,-,L1MA9,LINE,L1,0,7731,7163,2627175,2634912 +6 - chr11 2627750 2628046 chr11,2627750,2628046,-,AluJo,SINE,Alu,-12,300,6,2627738,2628051 +6 - chr11 2628046 2629333 chr11,2628046,2629333,-,L1MA9,LINE,L1,-569,7162,5822,2627477,2635154 +6 - chr11 2629333 2629677 chr11,2629333,2629677,-,L1M4,LINE,L1,-996,5150,4807,2628337,2634483 +6 - chr11 2629666 2630451 chr11,2629666,2630451,-,L1MA9,LINE,L1,-1737,5822,5024,2627929,2635474 +6 - chr11 2630480 2631686 chr11,2630480,2631686,-,L1MA9,LINE,L1,-4162,3404,2096,2626318,2633781 +6 - chr11 2631819 2631901 chr11,2631819,2631901,-,L1M3,LINE,L1,-1748,4392,4315,2630071,2636215 +6 - chr11 2631901 2632207 chr11,2631901,2632207,+,AluY,SINE,Alu,2,306,-5,2631900,2632212 -6 + chr11 2632207 2632513 chr11,2632207,2632513,-,L1M3,LINE,L1,-1826,4314,3993,2630381,2636505 +6 - chr11 2632523 2632682 chr11,2632523,2632682,-,L1MA5,LINE,L1,0,6300,6140,2632523,2638821 +6 - chr11 2632684 2633770 chr11,2632684,2633770,-,L1MA5,LINE,L1,-400,5900,4744,2632284,2638513 +6 - chr11 2633770 2633996 chr11,2633770,2633996,-,MER8,DNA,TcMar-Tigger,-13,226,1,2633757,2633996 +6 - chr11 2633996 2634139 chr11,2633996,2634139,-,L1MA5,LINE,L1,-1406,4737,4597,2632590,2638735 +6 - chr11 2634174 2640355 chr11,2634174,2640355,-,L1PA5,LINE,L1,-5,6149,2,2634169,2640356 +6 - chr11 2640356 2640559 chr11,2640356,2640559,-,AluJo,SINE,Alu,-83,229,27,2640273,2640585 +6 - chr11 2640568 2642486 chr11,2640568,2642486,-,L1MA4A,LINE,L1,0,7006,4957,2640568,2647442 +6 - chr11 2642482 2646252 chr11,2642482,2646252,-,L1MA4A,LINE,L1,-2803,4043,2,2639679,2646253 +6 - chr11 2646251 2646544 chr11,2646251,2646544,-,L1M2,LINE,L1,-1538,6024,5738,2644713,2652281 +6 - chr11 2646544 2646811 chr11,2646544,2646811,-,AluJb,SINE,Alu,-31,281,5,2646513,2646815 +6 - chr11 2646811 2647931 chr11,2646811,2647931,-,L1M2,LINE,L1,-1825,5737,4614,2644986,2652544 +6 - chr11 2647931 2648204 chr11,2647931,2648204,+,AluJb,SINE,Alu,1,282,-30,2647931,2648234 -6 + chr11 2648204 2648968 chr11,2648204,2648968,-,L1M2,LINE,L1,-2949,4613,3787,2645255,2652754 +6 - chr11 2648968 2649004 chr11,2648968,2649004,+,(T)n,Simple_repeat,Simple_repeat,1,36,0,2648968,2649004 -6 + chr11 2649004 2650582 chr11,2649004,2650582,-,L1M2,LINE,L1,-3776,3786,2135,2645228,2652716 +6 - chr11 2650576 2650645 chr11,2650576,2650645,-,L1MB4,LINE,L1,-6544,63,2,2644032,2650646 +6 - chr11 2650914 2651202 chr11,2650914,2651202,+,L2c,LINE,L2,2556,2864,-555,2648359,2651757 -6 + chr11 2651296 2651549 chr11,2651296,2651549,-,LTR16C,LTR,ERVL,-198,291,9,2651098,2651557 +6 - chr11 2651555 2651617 chr11,2651555,2651617,+,L2c,LINE,L2,3313,3377,-10,2648243,2651627 -6 + chr11 2653009 2653358 chr11,2653009,2653358,-,LTR85b,LTR,Gypsy?,-260,524,101,2652749,2653458 +6 - chr11 2653381 2653963 chr11,2653381,2653963,-,MLT1K,LTR,ERVL-MaLR,-10,585,4,2653371,2653966 +6 - chr11 2654977 2655083 chr11,2654977,2655083,-,L1ME4a,LINE,L1,-47,6077,5956,2654930,2661038 +6 - chr11 2655288 2655451 chr11,2655288,2655451,-,Charlie13a,DNA,hAT-Charlie,-582,932,750,2654706,2656200 +6 - chr11 2655465 2655581 chr11,2655465,2655581,-,AmnSINE1,SINE,5S-Deu-L2,-449,126,14,2655016,2655594 +6 - chr11 2655828 2656064 chr11,2655828,2656064,-,Charlie13a,DNA,hAT-Charlie,-1248,266,19,2654580,2656082 +6 - chr11 2656206 2656313 chr11,2656206,2656313,+,MIRc,SINE,MIR,51,169,-99,2656156,2656412 -6 + chr11 2656505 2657475 chr11,2656505,2657475,-,L1ME4a,LINE,L1,-810,5432,4372,2655695,2661846 +6 - chr11 2657490 2660215 chr11,2657490,2660215,-,L1MD3,LINE,L1,-29,7966,4971,2657461,2665185 +6 - chr11 2660443 2660841 chr11,2660443,2660841,+,L1ME3G,LINE,L1,1,370,-627,2660443,2661468 -6 + chr11 2666401 2666557 chr11,2666401,2666557,-,X9_LINE,LINE,L1,-589,347,194,2665812,2666750 +6 - chr11 2667104 2667242 chr11,2667104,2667242,+,MIRc,SINE,MIR,1,139,-129,2667104,2667371 -6 + chr11 2667568 2667603 chr11,2667568,2667603,+,G-rich,Low_complexity,Low_complexity,1,36,0,2667568,2667603 -6 + chr11 2667826 2669518 chr11,2667826,2669518,-,L1ME3A,LINE,L1,-6,6167,4394,2667820,2673911 +6 - chr11 2669547 2669744 chr11,2669547,2669744,+,MIRb,SINE,MIR,41,259,-9,2669507,2669753 -6 + chr11 2669762 2669901 chr11,2669762,2669901,+,LTR84b,LTR,ERVL,1,148,-613,2669762,2670514 -6 + chr11 2670371 2670495 chr11,2670371,2670495,-,L2b,LINE,L2,-8,3367,3249,2670363,2673743 +6 - chr11 2670465 2670598 chr11,2670465,2670598,-,MIR3,SINE,MIR,-28,180,49,2670437,2670646 +6 - chr11 2672633 2672764 chr11,2672633,2672764,-,MIRc,SINE,MIR,-130,138,3,2672503,2672766 +6 - chr11 2674384 2674420 chr11,2674384,2674420,+,(GTGC)n,Simple_repeat,Simple_repeat,1,36,0,2674384,2674420 -6 + chr11 2674832 2674860 chr11,2674832,2674860,+,(A)n,Simple_repeat,Simple_repeat,1,28,0,2674832,2674860 -6 + chr11 2675928 2676172 chr11,2675928,2676172,-,L1ME4b,LINE,L1,-24,868,628,2675904,2676799 +6 - chr11 2677033 2677779 chr11,2677033,2677779,+,Tigger18a,DNA,TcMar-Tigger,53,817,-35,2676981,2677814 -6 + chr11 2677790 2678113 chr11,2677790,2678113,-,L1ME4b,LINE,L1,-518,374,12,2677272,2678124 +6 - chr11 2678114 2678606 chr11,2678114,2678606,-,L1M5,LINE,L1,-912,5234,4711,2677202,2683316 +6 - chr11 2678619 2678680 chr11,2678619,2678680,+,X6B_LINE,LINE,CR1,841,904,-168,2677779,2678848 -6 + chr11 2679288 2679516 chr11,2679288,2679516,+,MIR,SINE,MIR,11,252,-16,2679278,2679532 -6 + chr11 2679886 2680191 chr11,2679886,2680191,-,AluSx1,SINE,Alu,-5,307,1,2679881,2680191 +6 - chr11 2680206 2680227 chr11,2680206,2680227,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,2680206,2680227 -6 + chr11 2680234 2680485 chr11,2680234,2680485,-,L1MC,LINE,L1,-1506,4640,4364,2678728,2684848 +6 - chr11 2680491 2680893 chr11,2680491,2680893,-,L1MD1,LINE,L1,0,6242,5832,2680491,2686724 +6 - chr11 2681939 2682121 chr11,2681939,2682121,-,MIRb,SINE,MIR,0,268,66,2681939,2682186 +6 - chr11 2682178 2682473 chr11,2682178,2682473,+,L2b,LINE,L2,3071,3361,-14,2679108,2682487 -6 + chr11 2682475 2682507 chr11,2682475,2682507,+,(GAGT)n,Simple_repeat,Simple_repeat,1,32,0,2682475,2682507 -6 + chr11 2686049 2686079 chr11,2686049,2686079,+,(GGGGCA)n,Simple_repeat,Simple_repeat,1,31,0,2686049,2686079 -6 + chr11 2687305 2687345 chr11,2687305,2687345,+,G-rich,Low_complexity,Low_complexity,1,42,0,2687305,2687345 -6 + chr11 2690188 2690323 chr11,2690188,2690323,+,MIRb,SINE,MIR,55,195,-73,2690134,2690396 -6 + chr11 2690607 2690658 chr11,2690607,2690658,+,(TATGTG)n,Simple_repeat,Simple_repeat,1,51,0,2690607,2690658 -6 + chr11 2692158 2692474 chr11,2692158,2692474,+,L2b,LINE,L2,2527,2860,-559,2689632,2693033 -6 + chr11 2692553 2692806 chr11,2692553,2692806,+,L2b,LINE,L2,3128,3375,0,2689426,2692806 -6 + chr11 2694129 2694212 chr11,2694129,2694212,-,MLT1K,LTR,ERVL-MaLR,-381,214,130,2693748,2694341 +6 - chr11 2694310 2694517 chr11,2694310,2694517,+,MER20,DNA,hAT-Charlie,2,219,0,2694309,2694517 -6 + chr11 2694627 2695120 chr11,2694627,2695120,-,L2a,LINE,L2,-7,3419,2823,2694620,2697942 +6 - chr11 2695148 2695512 chr11,2695148,2695512,-,L1ME5,LINE,L1,-12,6182,5812,2695136,2701323 +6 - chr11 2695524 2695870 chr11,2695524,2695870,-,L1M4,LINE,L1,-459,5735,5371,2695065,2701240 +6 - chr11 2695998 2696068 chr11,2695998,2696068,-,Charlie1b,DNA,hAT-Charlie,-385,138,68,2695613,2696135 +6 - chr11 2696082 2696914 chr11,2696082,2696914,-,L1M4,LINE,L1,-969,5177,4288,2695113,2701201 +6 - chr11 2696989 2697309 chr11,2696989,2697309,+,Charlie1,DNA,hAT-Charlie,1,248,-2533,2696989,2699842 -6 + chr11 2697343 2697850 chr11,2697343,2697850,-,L1M4,LINE,L1,-1947,4199,3661,2695396,2701510 +6 - chr11 2698076 2698232 chr11,2698076,2698232,-,L2b,LINE,L2,-14,3412,3219,2698062,2701450 +6 - chr11 2840135 2840363 chr11,2839992,2840363,-,Tigger2a,DNA,TcMar-Tigger,-2,432,4,2839990,2840366 +5 - chr11 2840369 2840442 chr11,2840369,2840787,+,L1M5,LINE,L1,4862,5301,-845,2835508,2841632 -2 + chr11 2990644 2990843 chr11,2990644,2990843,+,MIR,SINE,MIR,37,234,-28,2990608,2990871 +6 + chr11 3029748 3029792 chr11,3029748,3029792,+,G-rich,Low_complexity,Low_complexity,1,44,0,3029748,3029792 +6 + chr11 3030505 3031334 chr11,3030505,3031334,+,L1MEd,LINE,L1,618,1465,-5638,3029888,3036972 +6 + chr11 3031512 3031576 chr11,3031512,3031979,+,L1MCa,LINE,L1,1,477,-6031,3031512,3038010 +4 + chr11 3040780 3040803 chr11,3040767,3040803,+,(CTCAGAT)n,Simple_repeat,Simple_repeat,1,37,0,3040767,3040803 +2 + chr11 3189710 3189816 chr11,3189666,3189816,-,MIRb,SINE,MIR,-73,195,18,3189593,3189833 -2 - chr11 3222754 3223131 chr11,3222754,3223177,+,MLT1C,LTR,ERVL-MaLR,23,505,0,3222732,3223177 +5 + chr11 3226061 3226163 chr11,3226004,3226163,+,MIRb,SINE,MIR,14,189,-79,3225991,3226242 +1 + chr11 3336721 3336748 chr11,3336646,3336748,-,LTR16B,LTR,ERVL,-12,451,347,3336634,3337094 -1 - chr11 3340283 3340444 chr11,3340283,3340444,-,MIRb,SINE,MIR,-56,212,46,3340227,3340489 -6 - chr11 3481520 3481711 chr11,3479237,3481711,-,HERVE-int,LTR,ERV1,-5320,2493,3,3473917,3481713 +5 - chr11 3481711 3481739 chr11,3481711,3482016,-,HERVH-int,LTR,ERV1,-4272,3441,3140,3477439,3485155 +2 - chr11 3482863 3482982 chr11,3482002,3484835,-,HERVH-int,LTR,ERV1,-4721,2992,1,3477281,3484835 -3 - chr11 3482818 3482975 chr11,3482002,3484835,-,HERVH-int,LTR,ERV1,-4721,2992,1,3477281,3484835 +3 - chr11 3507980 3508172 chr11,3507812,3508172,+,MLT1H,LTR,ERVL-MaLR,194,549,0,3507619,3508172 -5 + chr11 3515091 3515198 chr11,3513036,3516232,-,HERVS71-int,LTR,ERV1,-5742,3236,4,3507294,3516235 +3 - chr11 3531169 3531328 chr11,3531169,3531400,-,MER33,DNA,hAT-Charlie,-15,309,72,3531154,3531471 -5 - chr11 3816949 3817038 chr11,3816949,3817038,+,MIRc,SINE,MIR,116,203,-65,3816834,3817103 +6 + chr11 3817767 3818075 chr11,3817767,3818075,+,AluJb,SINE,Alu,4,311,-1,3817764,3818076 +6 + chr11 3818080 3818149 chr11,3818080,3818327,+,AluSx,SINE,Alu,1,243,-69,3818080,3818396 +4 + chr11 3820456 3820677 chr11,3820396,3820677,+,AluSq2,SINE,Alu,1,300,-13,3820396,3820690 +2 + chr11 3820677 3820846 chr11,3820677,3820846,+,AluSz6,SINE,Alu,134,306,-6,3820544,3820852 +6 + chr11 3820847 3821014 chr11,3820847,3821014,-,MIRb,SINE,MIR,-84,184,16,3820763,3821029 -6 - chr11 3821476 3821770 chr11,3821476,3821770,+,AluSx1,SINE,Alu,2,295,-17,3821475,3821787 +6 + chr11 3821780 3821900 chr11,3821780,3822081,+,AluJb,SINE,Alu,1,305,-7,3821780,3822088 +5 + chr11 3854321 3854444 chr11,3854321,3854444,+,MamSINE1,SINE,tRNA-RTE,73,197,-93,3854249,3854537 -6 + chr11 3855141 3855180 chr11,3855141,3855180,+,(GGAGCTG)n,Simple_repeat,Simple_repeat,1,42,0,3855141,3855180 +6 + chr11 4137116 4137289 chr11,4136768,4138114,-,SVA_D,Retroposon,SVA,0,1386,429,4136768,4138542 +5 - chr11 4138086 4138114 chr11,4136768,4138114,-,SVA_D,Retroposon,SVA,0,1386,429,4136768,4138542 +5 - chr11 4202259 4202553 chr11,4201614,4202553,+,MER110-int,LTR,ERV1,1969,2964,-1683,4199646,4204236 +2 + chr11 5107438 5107530 chr11,5107424,5107699,+,AluJo,SINE,Alu,10,298,-14,5107415,5107713 -1 + chr11 5304976 5305080 chr11,5304779,5305080,+,AluSg,SINE,Alu,1,298,-12,5304779,5305092 -5 + chr11 5305404 5305671 chr11,5305404,5305671,+,AluSz6,SINE,Alu,2,268,-44,5305403,5305715 -6 + chr11 5340687 5340883 chr11,5340687,5340883,+,MIRc,SINE,MIR,9,221,-47,5340679,5340930 -6 + chr11 5341109 5341266 chr11,5341109,5341266,-,LTR16A1,LTR,ERVL,-2,454,289,5341107,5341554 +5 - chr11 5505485 5505652 chr11,5505485,5505844,-,THE1B,LTR,ERVL-MaLR,0,364,1,5505485,5505844 +1 - chr11 5572322 5572555 chr11,5572271,5572555,-,AluSp,SINE,Alu,-10,303,22,5572261,5572576 +5 - chr11 5590957 5591016 chr11,5589694,5591016,+,LTR12C,LTR,ERV1,1,1579,0,5589694,5591016 -4 + chr11 6185350 6185576 chr11,6185350,6191366,+,L1PA2,LINE,L1,128,6145,-10,6185223,6191376 -1 + chr11 6202302 6202605 chr11,6202302,6202605,+,MER46C,DNA,TcMar-Tigger,2,325,-13,6202301,6202618 -6 + chr11 6203157 6203231 chr11,6203157,6203231,-,L1PB4,LINE,L1,0,6156,6083,6203157,6209313 +6 - chr11 6364413 6364628 chr11,6364413,6364628,-,L2b,LINE,L2,-229,3158,2920,6364184,6367547 -6 - chr11 6364734 6364762 chr11,6364734,6364762,+,A-rich,Low_complexity,Low_complexity,1,28,0,6364734,6364762 +6 + chr11 6364774 6364850 chr11,6364774,6364850,-,L2b,LINE,L2,-611,2808,2733,6364163,6367582 -6 - chr11 6364856 6364885 chr11,6364856,6364885,-,L2a,LINE,L2,-3,3423,3395,6364853,6368279 -6 - chr11 6364885 6365267 chr11,6364885,6365309,+,MLT1D,LTR,ERVL-MaLR,1,505,0,6364885,6365309 +5 + chr11 6619673 6619764 chr11,6619673,6619783,+,MIRb,SINE,MIR,80,187,-81,6619594,6619864 +5 + chr11 6634932 6634993 chr11,6634474,6634993,-,Tigger17a,DNA,TcMar-Tigger,-98,556,30,6634376,6635022 -2 - chr11 7230410 7230640 chr11,7230340,7230640,-,L1MD,LINE,L1,-2114,4032,3721,7228226,7234360 -2 - chr11 7230757 7230863 chr11,7230757,7230883,+,L2a,LINE,L2,3302,3426,0,7227456,7230883 +5 + chr11 7435723 7435977 chr11,7435698,7435998,+,AluSz,SINE,Alu,1,300,-12,7435698,7436010 -5 + chr11 7437734 7437874 chr11,7437734,7437874,+,MamGypsy2-I,LTR,Gypsy,2324,2466,-1700,7435411,7439574 -6 + chr11 7438231 7438302 chr11,7438231,7438302,-,L2,LINE,L2,-1663,1756,1689,7436568,7439990 +6 - chr11 7439713 7439938 chr11,7439713,7439938,+,MLT1M,LTR,ERVL-MaLR,9,250,-422,7439705,7440360 -6 + chr11 7440266 7441413 chr11,7440266,7441413,+,L3,LINE,CR1,418,1764,-2335,7439849,7443748 -1 + chr11 7441416 7441719 chr11,7441416,7441827,-,MLT1L,LTR,ERVL-MaLR,-8,602,171,7441408,7441997 +2 - chr11 7457032 7457507 chr11,7456956,7457507,+,L2c,LINE,L2,2806,3378,-9,7454151,7457516 -5 + chr11 7465753 7465835 chr11,7465676,7466033,-,THE1A,LTR,ERVL-MaLR,0,355,1,7465676,7466033 +1 - chr11 7469641 7469766 chr11,7469468,7469785,+,AluJr4,SINE,Alu,1,299,-13,7469468,7469798 -5 + chr11 7512123 7512211 chr11,7512050,7512211,+,MamTip2,DNA,hAT-Tip100,1,188,-117,7512050,7512328 -4 + chr11 7512321 7512499 chr11,7512321,7512499,+,MER5B,DNA,hAT-Charlie,1,174,-4,7512321,7512503 -6 + chr11 7568904 7568972 chr11,7568904,7568972,-,MLT1O,LTR,ERVL-MaLR,-380,162,95,7568524,7569066 +6 - chr11 7699322 7699393 chr11,7699322,7699660,-,MER2,DNA,TcMar-Tigger,0,345,1,7699322,7699660 +5 - chr11 7699562 7699660 chr11,7699322,7699660,-,MER2,DNA,TcMar-Tigger,0,345,1,7699322,7699660 +5 - chr11 7699706 7699919 chr11,7699706,7699919,-,MER20,DNA,hAT-Charlie,0,219,1,7699706,7699919 +6 - chr11 7699957 7699988 chr11,7699957,7700003,+,tRNA-Gln-CAG,tRNA,tRNA,1,46,-29,7699957,7700032 -1 + chr11 7705288 7705456 chr11,7705155,7705456,+,L2c,LINE,L2,3080,3375,0,7702076,7705456 +1 + chr11 7705492 7705655 chr11,7705492,7705683,-,MIRb,SINE,MIR,-19,249,27,7705473,7705709 -4 - chr11 7709401 7709445 chr11,7709245,7709445,-,HAL1ME,LINE,L1,-2258,207,8,7706987,7709452 -2 - chr11 7754393 7754406 chr11,7754292,7754406,-,L3,LINE,CR1,-3771,328,205,7750521,7754610 +5 - chr11 7754408 7754521 chr11,7754408,7754701,+,AluSc8,SINE,Alu,1,303,-8,7754408,7754709 -2 + chr11 7850751 7851034 chr11,7850728,7851034,-,AluSx4,SINE,Alu,0,310,1,7850728,7851034 +5 - chr11 7851577 7851695 chr11,7851577,7851695,+,L2c,LINE,L2,3280,3383,-4,7848298,7851699 -6 + chr11 7854883 7854963 chr11,7854835,7855052,+,MIRc,SINE,MIR,2,236,-32,7854834,7855084 -3 + chr11 7879007 7879083 chr11,7878925,7879349,-,MSTA,LTR,ERVL-MaLR,-1,427,4,7878924,7879352 +3 - chr11 7879595 7879759 chr11,7879349,7879907,-,ERV24B_Prim-int,LTR,ERV1,-4117,3496,2937,7875232,7882843 +3 - chr11 7880981 7881182 chr11,7880738,7881429,+,L1ME4a,LINE,L1,5374,6123,-1,7875365,7881430 -5 + chr11 7881956 7882073 chr11,7881795,7882106,+,AluJo,SINE,Alu,1,308,-4,7881795,7882110 -3 + chr11 7882860 7882937 chr11,7882436,7882937,+,LTR33,LTR,ERVL,36,511,-4,7882401,7882941 -4 + chr11 7905603 7905722 chr11,7901509,7905722,-,HERVK3-int,LTR,ERVK,-2930,4272,1,7898579,7905722 +4 - chr11 7905760 7905955 chr11,7905760,7906232,-,LTR3A,LTR,ERVK,0,484,1,7905760,7906232 +1 - chr11 8011278 8011309 chr11,8011237,8011309,-,LTR16A2,LTR,ERVL,-2,493,421,8011235,8011729 +5 - chr11 8011309 8011528 chr11,8011309,8011528,-,MER63A,DNA,hAT-Blackjack,0,210,1,8011309,8011528 +6 - chr11 8011528 8011854 chr11,8011528,8011854,-,LTR16A2,LTR,ERVL,-75,420,104,8011453,8011957 +6 - chr11 8011867 8012268 chr11,8011867,8012370,+,MER77,LTR,ERVL,102,604,0,8011766,8012370 -2 + chr11 8016075 8016469 chr11,8015764,8016469,-,LTR85c,LTR,Gypsy?,-12,811,65,8015752,8016533 +4 - chr11 8016479 8016489 chr11,8016479,8016939,-,MLT1G,LTR,ERVL-MaLR,-47,544,14,8016432,8016952 +1 - chr11 8035719 8036008 chr11,8035719,8036008,+,MamTip3,DNA,hAT-Tip100,1,312,-188,8035719,8036196 -6 + chr11 8039654 8039684 chr11,8039654,8039684,+,GA-rich,Low_complexity,Low_complexity,1,31,0,8039654,8039684 -6 + chr11 8067423 8067479 chr11,8067261,8067512,+,MIRb,SINE,MIR,5,268,0,8067257,8067512 +3 + chr11 8067610 8067686 chr11,8067563,8067686,-,L2a,LINE,L2,0,3426,3303,8067563,8070988 -2 - chr11 8067717 8067771 chr11,8067717,8067771,+,(TCAGCC)n,Simple_repeat,Simple_repeat,1,57,0,8067717,8067771 +6 + chr11 8067778 8067950 chr11,8067778,8067950,+,L2c,LINE,L2,2328,2506,-913,8065451,8068863 +5 + chr11 8068004 8068232 chr11,8068004,8068232,-,MIR,SINE,MIR,-4,258,2,8068000,8068233 -6 - chr11 8068291 8068363 chr11,8068291,8068363,+,L2c,LINE,L2,2699,2771,-648,8065593,8069011 +6 + chr11 8068598 8068895 chr11,8068598,8068895,+,L2c,LINE,L2,3072,3353,-22,8065527,8068917 +6 + chr11 8069009 8069205 chr11,8069009,8069205,-,MIR3,SINE,MIR,-2,206,7,8069007,8069211 -6 - chr11 8075573 8075795 chr11,8075498,8075795,-,LTR78,LTR,ERV1,0,1304,981,8075498,8076775 +5 - chr11 8075813 8076572 chr11,8075813,8076572,-,LTR78,LTR,ERV1,-395,909,32,8075418,8076603 +6 - chr11 8076628 8076688 chr11,8076628,8076688,+,MIRb,SINE,MIR,205,264,-4,8076424,8076692 -6 + chr11 8076710 8076962 chr11,8076710,8076962,-,L1M6,LINE,L1,-4081,2415,2147,8072629,8079108 +6 - chr11 8077091 8077508 chr11,8077091,8077508,+,L2c,LINE,L2,2701,3077,-342,8074391,8077850 -6 + chr11 8077561 8077781 chr11,8077561,8077829,+,L2c,LINE,L2,3070,3306,-81,8074492,8077910 -1 + chr11 8169167 8169189 chr11,8169151,8169668,+,L2,LINE,L2,2483,3077,-342,8166669,8170010 +1 + chr11 8169959 8169988 chr11,8169959,8170204,-,L2c,LINE,L2,-222,3165,2911,8169737,8173114 -4 - chr11 8175434 8175477 chr11,8175434,8175477,+,GA-rich,Low_complexity,Low_complexity,1,44,0,8175434,8175477 +6 + chr11 8175527 8175612 chr11,8175527,8175612,-,MIR1_Amn,SINE,MIR,-145,85,9,8175382,8175620 -6 - chr11 8176225 8176588 chr11,8176225,8176588,+,MLT2D,LTR,ERVL,1,366,-48,8176225,8176636 +6 + chr11 8176882 8177252 chr11,8176882,8177252,+,MLT1N2,LTR,ERVL-MaLR,39,423,-139,8176844,8177391 +6 + chr11 8177255 8177306 chr11,8177255,8177306,+,MIRc,SINE,MIR,119,178,-90,8177137,8177396 +6 + chr11 8178495 8178903 chr11,8178495,8178950,+,LTR16C,LTR,ERVL,1,489,0,8178495,8178950 +5 + chr11 8680719 8680913 chr11,8680719,8681122,-,L2c,LINE,L2,-1109,2310,1851,8679610,8682972 -5 - chr11 8787054 8787149 chr11,8786937,8787149,-,MIRb,SINE,MIR,-11,257,12,8786926,8787160 -2 - chr11 8976165 8976226 chr11,8975991,8976226,-,AluJr,SINE,Alu,-51,261,28,8975940,8976253 -2 - chr11 8977419 8977527 chr11,8977388,8978423,+,SVA_D,Retroposon,SVA,50,870,-517,8977339,8978940 +5 + chr11 9064532 9064664 chr11,9064496,9064664,+,HAL1,LINE,L1,2316,2457,-50,9062181,9064714 +2 + chr11 9065106 9065154 chr11,9065106,9065185,-,MIR,SINE,MIR,-14,248,174,9065092,9065358 -5 - chr11 9242448 9242477 chr11,9242360,9242477,+,L2c,LINE,L2,3213,3331,-56,9239148,9242533 -5 + chr11 9242526 9242651 chr11,9242526,9242651,+,MIRb,SINE,MIR,35,172,-96,9242492,9242747 -6 + chr11 9242740 9242807 chr11,9242740,9242807,-,MamSINE1,SINE,tRNA-RTE,-123,167,110,9242617,9242916 +6 - chr11 9242807 9242829 chr11,9242807,9243116,+,AluSg,SINE,Alu,1,309,-1,9242807,9243117 -2 + chr11 9245331 9245509 chr11,9245316,9245601,+,AluSx,SINE,Alu,9,293,-19,9245308,9245620 -1 + chr11 9430356 9430423 chr11,9430238,9430423,-,MIRb,SINE,MIR,-28,240,12,9430210,9430434 +5 - chr11 9430585 9430604 chr11,9430585,9430708,-,MIRb,SINE,MIR,-48,220,82,9430537,9430789 +2 - chr11 9433139 9433285 chr11,9432989,9433285,-,AluSq2,SINE,Alu,-14,299,1,9432975,9433285 +4 - chr11 9754770 9755087 chr11,9754599,9755087,+,L1ME3,LINE,L1,5576,6142,-20,9749024,9755107 -5 + chr11 9755127 9755415 chr11,9755127,9755415,-,AluSz,SINE,Alu,-14,298,1,9755113,9755415 +5 - chr11 9756513 9756595 chr11,9756513,9756595,+,MIRb,SINE,MIR,22,109,-159,9756492,9756754 -6 + chr11 9757841 9757884 chr11,9757841,9757884,+,MADE1,DNA,TcMar-Mariner,38,80,0,9757804,9757884 -6 + chr11 9758130 9758164 chr11,9758130,9758190,+,(GTGGC)n,Simple_repeat,Simple_repeat,1,61,0,9758130,9758190 -1 + chr11 9758474 9758503 chr11,9758474,9758607,-,MIR,SINE,MIR,-68,194,47,9758406,9758653 -4 - chr11 9759515 9759533 chr11,9759515,9759553,+,GA-rich,Low_complexity,Low_complexity,1,39,0,9759515,9759553 -1 + chr11 9775645 9775765 chr11,9775466,9776058,+,MER21C,LTR,ERVL,199,898,-40,9775268,9776098 +1 + chr11 9808843 9808886 chr11,9808843,9808886,+,A-rich,Low_complexity,Low_complexity,1,44,0,9808843,9808886 +6 + chr11 9809183 9809284 chr11,9809183,9809307,+,AluJr,SINE,Alu,1,124,-188,9809183,9809495 +4 + chr11 9810260 9810294 chr11,9809993,9810294,+,AluJb,SINE,Alu,1,301,-11,9809993,9810305 +2 + chr11 9810681 9811319 chr11,9810681,9811357,+,L1PA15,LINE,L1,5463,6162,-3,9805219,9811360 +5 + chr11 9839143 9839154 chr11,9839019,9839154,+,MER58A,DNA,hAT-Charlie,80,222,-2,9838940,9839156 +1 + chr11 9928890 9929263 chr11,9928725,9929933,+,HSMAR1,DNA,TcMar-Mariner,11,1223,-64,9928715,9929997 +5 + chr11 10149192 10149562 chr11,10148514,10149710,-,MLT1J2-int,LTR,ERVL-MaLR,-35,1352,1,10148479,10149710 -1 - chr11 10303540 10303673 chr11,10303540,10303673,-,MIR3,SINE,MIR,-7,201,51,10303533,10303723 +6 - chr11 10595721 10595795 chr11,10595698,10596174,-,L1PREC2,LINE,L1,0,6160,5679,10595698,10601852 -3 - chr11 10599777 10599932 chr11,10599777,10599947,+,L2c,LINE,L2,2685,2863,-556,10597093,10600503 +5 + chr11 10783313 10783374 chr11,10783304,10783392,+,MER103C,DNA,hAT-Charlie,5,103,-194,10783300,10783586 +1 + chr11 10792095 10792184 chr11,10791685,10792184,+,L2a,LINE,L2,2843,3412,-14,10788843,10792198 +2 + chr11 10820732 10821001 chr11,10820697,10821001,-,AluJr4,SINE,Alu,0,312,1,10820697,10821001 -2 - chr11 10821078 10821492 chr11,10821078,10821492,+,L1M3,LINE,L1,3140,3561,-2579,10817939,10824071 +6 + chr11 10821494 10822000 chr11,10821494,10822000,-,L1M3,LINE,L1,-2631,3509,2978,10818863,10824977 -6 - chr11 10822000 10822048 chr11,10822000,10822048,+,(TG)n,Simple_repeat,Simple_repeat,1,48,0,10822000,10822048 +6 + chr11 10822053 10822327 chr11,10822053,10822327,-,AluSx1,SINE,Alu,-39,273,1,10822014,10822327 -6 - chr11 10822327 10822489 chr11,10822327,10822489,-,L1M3,LINE,L1,-3163,2977,2797,10819164,10825285 -6 - chr11 10822528 10822739 chr11,10822528,10822739,+,MER21A,LTR,ERVL,13,263,-668,10822516,10823407 +6 + chr11 10822745 10822931 chr11,10822745,10823314,+,MER21A,LTR,ERVL,376,931,0,10822370,10823314 +5 + chr11 10858287 10858418 chr11,10858287,10858418,-,MER5A,DNA,hAT-Charlie,0,189,57,10858287,10858474 -6 - chr11 10878492 10878629 chr11,10878492,10878629,-,FLAM_C,SINE,Alu,-11,132,1,10878481,10878629 -6 - chr11 10878694 10879276 chr11,10878694,10879318,+,LTR50,LTR,ERVL,1,788,-7,10878694,10879325 +5 + chr11 10884885 10885124 chr11,10884067,10885132,-,MER11A,LTR,ERVK,-4,1262,1,10884063,10885132 +5 - chr11 10896506 10896683 chr11,10896506,10896683,+,MIRb,SINE,MIR,3,198,-70,10896504,10896753 -6 + chr11 10896973 10897018 chr11,10896973,10897229,+,L1ME4c,LINE,L1,367,637,-193,10896607,10897422 -2 + chr11 10906473 10906616 chr11,10906473,10906616,-,LTR81A,LTR,Gypsy,-1164,186,36,10905309,10906651 -6 - chr11 11167823 11168091 chr11,11167743,11168091,-,MLT1N2,LTR,ERVL-MaLR,0,562,213,11167743,11168303 -2 - chr11 11169093 11169122 chr11,11169093,11169122,+,(AAAC)n,Simple_repeat,Simple_repeat,1,29,0,11169093,11169122 +6 + chr11 11182512 11182612 chr11,11182512,11182612,-,L3,LINE,CR1,-202,3897,3799,11182310,11186410 -6 - chr11 11183363 11183408 chr11,11183285,11183408,+,L2c,LINE,L2,3024,3164,-223,11180262,11183631 +2 + chr11 11243188 11243242 chr11,11243052,11243242,-,MIRb,SINE,MIR,-71,197,2,11242981,11243243 +5 - chr11 11243467 11243578 chr11,11243467,11243578,+,MIRc,SINE,MIR,32,153,-115,11243436,11243693 -6 + chr11 11573525 11573558 chr11,11573414,11573558,-,MIRb,SINE,MIR,-6,262,106,11573408,11573663 -2 - chr11 11725497 11725550 chr11,11725497,11725550,-,MER20,DNA,hAT-Charlie,0,219,167,11725497,11725716 +6 - chr11 11725584 11725761 chr11,11725584,11725761,+,L2c,LINE,L2,3076,3266,-121,11722509,11725882 -6 + chr11 11725829 11726033 chr11,11725829,11726033,-,L3,LINE,CR1,-48,4051,3824,11725781,11729856 +6 - chr11 11726404 11726702 chr11,11726404,11726702,+,AluY,SINE,Alu,1,298,-13,11726404,11726715 -1 + chr11 12030875 12030930 chr11,12030610,12031018,+,MSTA,LTR,ERVL-MaLR,1,428,0,12030610,12031018 +1 + chr11 12058534 12058780 chr11,12058519,12058780,-,MLT1G,LTR,ERVL-MaLR,-305,286,15,12058214,12058794 -2 - chr11 12059235 12059468 chr11,12059235,12059468,-,AluSz6,SINE,Alu,-75,237,2,12059160,12059469 -6 - chr11 12059604 12059756 chr11,12059604,12059756,+,MLT1A0,LTR,ERVL-MaLR,5,156,-209,12059600,12059965 +6 + chr11 12059756 12060057 chr11,12059756,12060057,+,AluJb,SINE,Alu,1,301,-11,12059756,12060068 +6 + chr11 12060057 12060185 chr11,12060057,12060185,+,MLT1A0,LTR,ERVL-MaLR,157,297,-68,12059901,12060253 +6 + chr11 12060185 12060479 chr11,12060185,12060479,+,AluSz,SINE,Alu,1,294,-18,12060185,12060497 +6 + chr11 12060479 12060544 chr11,12060479,12060544,+,MLT1A0,LTR,ERVL-MaLR,298,364,-1,12060182,12060545 +6 + chr11 12060580 12060680 chr11,12060580,12060680,-,L2a,LINE,L2,-13,3413,3303,12060567,12063982 -6 - chr11 12061306 12061390 chr11,12061306,12061390,+,MER103C,DNA,hAT-Charlie,146,228,-69,12061161,12061459 +6 + chr11 12061404 12061785 chr11,12061404,12061835,+,MLT1C,LTR,ERVL-MaLR,6,465,-2,12061399,12061837 +5 + chr11 12072191 12072469 chr11,12072167,12072469,-,AluSc8,SINE,Alu,-8,303,1,12072159,12072469 -2 - chr11 12072500 12072791 chr11,12072500,12072791,-,MLT1J2,LTR,ERVL-MaLR,0,448,109,12072500,12072899 -6 - chr11 12072941 12073014 chr11,12072941,12073399,+,MLT1D,LTR,ERVL-MaLR,1,504,-1,12072941,12073400 +5 + chr11 12303533 12303606 chr11,12303477,12303606,+,Charlie5,DNA,hAT-Charlie,2352,2459,-165,12301126,12303771 +1 + chr11 12303632 12303787 chr11,12303632,12303787,-,L1M5,LINE,L1,-743,5403,5238,12302889,12309024 -6 - chr11 12303787 12303800 chr11,12303787,12304053,+,AluJo,SINE,Alu,33,307,-5,12303755,12304058 +4 + chr11 12308101 12308188 chr11,12307877,12308188,-,AluJo,SINE,Alu,-7,305,2,12307870,12308189 -2 - chr11 12308188 12308216 chr11,12308188,12309022,-,L1ME1,LINE,L1,-1399,4747,3851,12306789,12312872 -5 - chr11 12538218 12538343 chr11,12538218,12538343,-,MIR,SINE,MIR,-92,170,5,12538126,12538347 +6 - chr11 12848795 12848879 chr11,12848663,12848973,+,AluJr,SINE,Alu,1,306,-6,12848663,12848979 +1 + chr11 12849100 12849345 chr11,12849041,12849345,-,AluSz,SINE,Alu,-6,306,2,12849035,12849346 -2 - chr11 12921255 12921276 chr11,12921255,12921556,+,AluSp,SINE,Alu,2,301,-12,12921254,12921568 -2 + chr11 12922451 12922462 chr11,12922187,12922462,-,AluYa5,SINE,Alu,-3,308,34,12922184,12922495 +4 - chr11 12922462 12922564 chr11,12922462,12922564,-,L4_C_Mam,LINE,RTE-X,-260,4878,4777,12922202,12927340 +6 - chr11 12922655 12922925 chr11,12922655,12922949,+,AluSz6,SINE,Alu,10,308,-4,12922646,12922953 -1 + chr11 12962647 12962763 chr11,12962647,12963103,+,LTR33A,LTR,ERVL,26,518,-2,12962622,12963105 -2 + chr11 12965108 12965214 chr11,12965035,12965240,+,AluJr,SINE,Alu,87,301,-11,12964949,12965251 -3 + chr11 12979535 12979590 chr11,12979352,12979590,-,L2a,LINE,L2,0,3426,3198,12979352,12982787 +5 - chr11 12979658 12979971 chr11,12979658,12979971,-,AluSq2,SINE,Alu,0,313,2,12979658,12979972 +6 - chr11 12980020 12980069 chr11,12980020,12980069,+,(TTTT)n,Simple_repeat,Simple_repeat,1,49,0,12980020,12980069 -5 + chr11 12980376 12980420 chr11,12980376,12980420,-,OldhAT1,DNA,hAT-Ac,-762,2086,2043,12979614,12982462 +6 - chr11 12984226 12984338 chr11,12984120,12985098,+,ERVL-E-int,LTR,ERVL,4357,5407,-260,12979764,12985358 -1 + chr11 12986040 12986127 chr11,12985876,12986127,+,LTR50,LTR,ERVL,5,309,-486,12985872,12986613 -4 + chr11 12986118 12986144 chr11,12986118,12986338,-,MLT1F2,LTR,ERVL-MaLR,-305,255,3,12985813,12986340 +2 - chr11 12988402 12988466 chr11,12988178,12988467,-,AluJr,SINE,Alu,-20,292,1,12988158,12988467 +3 - chr11 12989456 12989548 chr11,12989406,12989730,-,THE1D,LTR,ERVL-MaLR,-39,342,1,12989367,12989730 +1 - chr11 13001090 13001117 chr11,13001011,13001117,+,MIRc,SINE,MIR,83,201,-67,13000929,13001184 -5 + chr11 13054914 13055034 chr11,13054914,13055091,-,L2a,LINE,L2,-810,2609,2441,13054104,13057531 +2 - chr11 13134793 13134839 chr11,13134703,13134972,-,Tigger3,DNA,TcMar-Tigger,-225,2804,2536,13134478,13137507 +1 - chr11 13670112 13670149 chr11,13670087,13670229,-,AluJr,SINE,Alu,-30,282,138,13670057,13670366 -5 - chr11 13785390 13785453 chr11,13785311,13785570,-,L1ME4c,LINE,L1,-350,480,195,13784961,13785764 -1 - chr11 13826954 13827280 chr11,13826954,13827446,-,MLT1F1,LTR,ERVL-MaLR,-2,567,38,13826952,13827483 +2 - chr11 13869369 13869390 chr11,13869369,13869408,-,MER103C,DNA,hAT-Charlie,-152,145,107,13869217,13869514 +2 - chr11 13870548 13870616 chr11,13870513,13871064,-,L2a,LINE,L2,-2,3424,2812,13870511,13873875 +1 - chr11 13924692 13924863 chr11,13924594,13925000,+,L2c,LINE,L2,2927,3343,-44,13921668,13925044 -1 + chr11 15552855 15552913 chr11,15551450,15553107,-,L1MC3,LINE,L1,-4966,1542,1,15546484,15553107 -1 - chr11 15557218 15557251 chr11,15556866,15557251,+,MLT1A1,LTR,ERVL-MaLR,1,407,-1,15556866,15557252 +2 + chr11 15561878 15562134 chr11,15560740,15562134,+,LTR12C,LTR,ERV1,3,1579,0,15560738,15562134 +2 + chr11 15572023 15572146 chr11,15571928,15572146,-,MLT1J,LTR,ERVL-MaLR,-203,407,108,15571725,15572253 +5 - chr11 15585709 15585802 chr11,15585709,15585941,+,L2b,LINE,L2,3112,3387,0,15582598,15585941 +4 + chr11 15622305 15622331 chr11,15622145,15622331,-,MIR3,SINE,MIR,-13,195,19,15622132,15622349 +4 - chr11 15643885 15644004 chr11,15643595,15644004,+,L2b,LINE,L2,2922,3337,-38,15640674,15644042 +1 + chr11 15705175 15705368 chr11,15705016,15705419,+,MLT1B,LTR,ERVL-MaLR,1,390,0,15705016,15705419 +5 + chr11 15910975 15911012 chr11,15910975,15911012,+,(CT)n,Simple_repeat,Simple_repeat,1,38,0,15910975,15911012 +6 + chr11 15911782 15911884 chr11,15911546,15912089,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,15911546,15912089 +3 + chr11 15927232 15927242 chr11,15927051,15927242,-,MLT1K,LTR,ERVL-MaLR,-6,589,403,15927045,15927644 -2 - chr11 15927289 15927443 chr11,15927289,15927536,-,MLT1K,LTR,ERVL-MaLR,-273,322,47,15927016,15927582 -5 - chr11 16023190 16023293 chr11,16022878,16023373,+,L2c,LINE,L2,2911,3377,-10,16019968,16023383 +1 + chr11 17380649 17380789 chr11,17380490,17380789,-,AluJo,SINE,Alu,-17,295,1,17380473,17380789 -1 - chr11 17380789 17381038 chr11,17380789,17381038,+,MER6A,DNA,TcMar-Tigger,376,605,0,17380414,17381038 +6 + chr11 17381038 17381229 chr11,17381038,17381229,+,LTR16B1,LTR,ERVL,272,479,-1,17380767,17381230 +6 + chr11 17381434 17382022 chr11,17381434,17382022,+,LTR101_Mam,LTR,ERVL,157,753,-76,17381278,17382098 +6 + chr11 17383151 17383241 chr11,17383151,17383241,+,MIRb,SINE,MIR,23,112,-156,17383129,17383397 +6 + chr11 17383241 17383531 chr11,17383241,17383578,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,17383241,17383578 +5 + chr11 17695282 17695366 chr11,17695282,17695404,-,MIRb,SINE,MIR,-115,153,43,17695167,17695446 -4 - chr11 17695282 17695404 chr11,17695282,17695404,-,MIRb,SINE,MIR,-115,153,43,17695167,17695446 +6 - chr11 17696829 17696929 chr11,17696829,17696929,+,L2c,LINE,L2,3030,3158,-229,17693800,17697158 -6 + chr11 17697339 17697369 chr11,17697339,17697369,+,(TGGCCC)n,Simple_repeat,Simple_repeat,1,32,0,17697339,17697369 +6 + chr11 18140281 18140378 chr11,18140281,18140378,+,L2c,LINE,L2,3219,3318,-69,18137063,18140447 -6 + chr11 18406652 18406731 chr11,18406435,18406731,+,AluSq2,SINE,Alu,1,298,-15,18406435,18406746 +5 + chr11 18507815 18507900 chr11,18507815,18508107,+,AluSx1,SINE,Alu,1,296,-16,18507815,18508123 -2 + chr11 18601474 18601709 chr11,18601443,18601709,-,AluJr,SINE,Alu,-7,305,1,18601436,18601709 -2 - chr11 18601743 18601764 chr11,18601743,18601955,+,MIRc,SINE,MIR,29,252,-16,18601715,18601971 +1 + chr11 18601882 18601955 chr11,18601743,18601955,+,MIRc,SINE,MIR,29,252,-16,18601715,18601971 +1 + chr11 18602024 18602135 chr11,18602024,18602135,-,MIRb,SINE,MIR,-161,107,7,18601863,18602141 -6 - chr11 18602433 18602503 chr11,18602433,18602503,+,MIR1_Amn,SINE,MIR,79,150,-80,18602355,18602583 +6 + chr11 18706899 18707049 chr11,18706899,18707049,-,OldhAT1,DNA,hAT-Ac,-2104,744,604,18704795,18707652 -6 - chr11 18707330 18707393 chr11,18707330,18707487,+,MIRb,SINE,MIR,36,208,-60,18707295,18707547 +4 + chr11 18740424 18740487 chr11,18740327,18740487,-,MIRb,SINE,MIR,-28,240,60,18740299,18740546 -2 - chr11 18934985 18935018 chr11,18934840,18935018,-,MIRb,SINE,MIR,-64,204,11,18934776,18935028 -1 - chr11 18939595 18939721 chr11,18939595,18940083,+,Tigger1,DNA,TcMar-Tigger,1913,2417,-1,18937683,18940084 +5 + chr11 19281268 19281299 chr11,19281268,19281299,+,(GCA)n,Simple_repeat,Simple_repeat,1,31,0,19281268,19281299 +6 + chr11 19301161 19301244 chr11,19301047,19301264,-,MLT1M,LTR,ERVL-MaLR,-343,329,107,19300704,19301370 -3 - chr11 19301377 19301415 chr11,19301308,19301415,+,L1ME3,LINE,L1,5459,5563,-599,19295850,19302014 +2 + chr11 19301415 19301483 chr11,19301415,19303782,-,Tigger1,DNA,TcMar-Tigger,0,2418,3,19301415,19303784 -4 - chr11 19308228 19308358 chr11,19308228,19308410,-,MER117,DNA,hAT-Charlie,-1,196,5,19308227,19308414 -5 - chr11 19384893 19385014 chr11,19384893,19385236,+,L1M5,LINE,L1,5191,5554,-610,19379703,19385846 +5 + chr11 19502672 19502728 chr11,19502622,19502728,-,MLT1H1,LTR,ERVL-MaLR,0,555,447,19502622,19503174 +5 - chr11 19502766 19503015 chr11,19502766,19503015,-,MLT1H1,LTR,ERVL-MaLR,-257,298,24,19502509,19503038 +6 - chr11 19503097 19503126 chr11,19503097,19503126,+,L1MD,LINE,L1,5129,5153,-993,19497969,19504119 -6 + chr11 19503126 19503829 chr11,19503126,19503829,-,L1MC1,LINE,L1,0,6333,5622,19503126,19509450 +6 - chr11 19503829 19503858 chr11,19503829,19504295,+,L1MC1,LINE,L1,5154,5625,-708,19498676,19505003 -2 + chr11 19504285 19504295 chr11,19503829,19504295,+,L1MC1,LINE,L1,5154,5625,-708,19498676,19505003 -4 + chr11 19504891 19505039 chr11,19504805,19505039,-,MIRb,SINE,MIR,-14,254,22,19504791,19505060 +5 - chr11 19505431 19505564 chr11,19505431,19505564,-,MLT1O,LTR,ERVL-MaLR,-317,225,96,19505114,19505659 +6 - chr11 19505783 19506447 chr11,19505783,19506447,-,LTR16D,LTR,ERVL,-4,671,1,19505779,19506447 +1 - chr11 19506447 19506612 chr11,19506447,19506612,+,MIRb,SINE,MIR,88,265,-3,19506360,19506615 -6 + chr11 19506815 19506992 chr11,19506815,19506992,-,MER45A,DNA,hAT-Tip100,0,178,2,19506815,19506993 +6 - chr11 19510951 19511169 chr11,19510951,19511169,-,MIRc,SINE,MIR,-19,249,20,19510932,19511188 +6 - chr11 19511339 19511547 chr11,19511339,19511547,+,L1MB8,LINE,L1,5921,6118,-60,19505419,19511607 -6 + chr11 19711244 19711582 chr11,19711244,19711582,-,MLT1A0,LTR,ERVL-MaLR,-2,363,21,19711242,19711602 +6 - chr11 19711741 19711926 chr11,19711741,19711926,-,MIRb,SINE,MIR,-3,265,99,19711738,19712024 +6 - chr11 20131730 20131788 chr11,20131640,20131788,-,MLT1K,LTR,ERVL-MaLR,-426,169,20,20131214,20131807 -1 - chr11 20131945 20133244 chr11,20131945,20133244,+,L1M3f,LINE,L1,1238,2542,-5023,20130708,20138267 +6 + chr11 20133244 20133553 chr11,20133244,20133553,+,AluJr,SINE,Alu,1,307,-5,20133244,20133558 +6 + chr11 20133553 20133628 chr11,20133553,20133628,+,L1M3f,LINE,L1,2543,2598,-4967,20131011,20138595 +6 + chr11 20133648 20133729 chr11,20133648,20133729,-,MIRb,SINE,MIR,-34,234,154,20133614,20133882 -6 - chr11 20134294 20134551 chr11,20134294,20134551,+,L1MC4,LINE,L1,6368,6642,-1240,20127927,20135791 +6 + chr11 20134551 20134889 chr11,20134551,20134889,+,L1MC4,LINE,L1,6712,7058,-984,20127840,20135873 +6 + chr11 20135113 20135404 chr11,20135113,20135404,+,MER102c,DNA,hAT-Charlie,2,330,-1,20135112,20135405 +6 + chr11 21260061 21260093 chr11,21260004,21260093,-,L2a,LINE,L2,0,3426,3323,21260004,21263415 +5 - chr11 21262538 21262570 chr11,21261754,21263996,-,HAL1,LINE,L1,-20,2487,4,21261734,21263999 +1 - chr11 22113448 22113481 chr11,22113409,22114159,-,L2a,LINE,L2,-259,3167,2313,22113150,22116471 -1 - chr11 22116559 22116881 chr11,22116536,22116881,-,MSTA,LTR,ERVL-MaLR,-70,358,1,22116466,22116881 -2 - chr11 22261209 22261382 chr11,22261159,22261382,-,THE1D,LTR,ERVL-MaLR,0,381,152,22261159,22261533 +5 - chr11 22261382 22261636 chr11,22261382,22261681,+,AluSx3,SINE,Alu,1,299,-12,22261382,22261693 -2 + chr11 22283730 22283824 chr11,22283674,22284367,+,MER50B,LTR,ERV1,1,697,0,22283674,22284367 -5 + chr11 22307245 22307288 chr11,22307245,22307288,+,(TCA)n,Simple_repeat,Simple_repeat,1,43,0,22307245,22307288 -6 + chr11 22307347 22307374 chr11,22307347,22307503,-,MIRc,SINE,MIR,-61,207,36,22307286,22307538 +2 - chr11 22317752 22318046 chr11,22317577,22318319,-,LTR17,LTR,ERV1,0,780,1,22317577,22318319 +5 - chr11 22361213 22361257 chr11,22361046,22361257,-,L1M4,LINE,L1,-2583,3563,3340,22358463,22364596 +5 - chr11 22447114 22447376 chr11,22447042,22447432,-,MLT1F2,LTR,ERVL-MaLR,-1,559,105,22447041,22447536 +1 - chr11 22467898 22467945 chr11,22467898,22467987,-,L2c,LINE,L2,-49,3338,3244,22467849,22471230 +2 - chr11 22502814 22502839 chr11,22502814,22502839,+,(TAAA)n,Simple_repeat,Simple_repeat,1,27,0,22502814,22502839 +6 + chr11 22834907 22834928 chr11,22834186,22834928,+,MER4E1,LTR,ERV1,1,781,0,22834186,22834928 +2 + chr11 22834928 22835064 chr11,22834928,22835280,+,MER4-int,LTR,ERV1,1,352,-6406,22834928,22841686 +4 + chr11 22838229 22838364 chr11,22836874,22838643,+,MER4B-int,LTR,ERV1,4453,6313,-445,22832422,22839088 +3 + chr11 22920518 22920645 chr11,22920496,22920645,-,AluJr4,SINE,Alu,-10,302,152,22920486,22920796 -2 - chr11 22944245 22944388 chr11,22944245,22944388,-,MIRb,SINE,MIR,-92,170,24,22944153,22944411 -6 - chr11 23164991 23165093 chr11,23164991,23165175,+,MLT1F1,LTR,ERVL-MaLR,351,545,-24,23164641,23165199 +4 + chr11 23165194 23165333 chr11,23165194,23165505,-,MLT1A1,LTR,ERVL-MaLR,-75,333,2,23165119,23165506 -4 - chr11 23166493 23166613 chr11,23166426,23166700,+,MLT1J1,LTR,ERVL-MaLR,154,444,0,23166273,23166700 +3 + chr11 23183400 23183474 chr11,23183198,23183687,+,Arthur1,DNA,hAT-Tip100,3438,3947,0,23179761,23183687 +3 + chr11 23192026 23192084 chr11,23192026,23192145,+,L1ME4a,LINE,L1,5960,6070,-54,23186067,23192199 +4 + chr11 23192346 23192403 chr11,23192254,23192598,+,MLT1G1,LTR,ERVL-MaLR,1,347,-201,23192254,23192799 +3 + chr11 23202998 23203161 chr11,23202527,23203870,+,LTR2752,LTR,ERV1,1,1262,-1,23202527,23203871 +5 + chr11 23731600 23731658 chr11,23731594,23738045,+,L1PA7,LINE,L1,8,6468,-1,23731587,23738046 +3 + chr11 23761497 23761630 chr11,23761497,23761701,+,MIR,SINE,MIR,2,214,-48,23761496,23761749 -2 + chr11 23780788 23780872 chr11,23780607,23780875,+,AluSz,SINE,Alu,2,246,-66,23780606,23780941 -3 + chr11 23794823 23794854 chr11,23794822,23794854,+,GA-rich,Low_complexity,Low_complexity,1,32,0,23794822,23794854 +2 + chr11 24235477 24235505 chr11,24235462,24236006,+,L1ME1,LINE,L1,4636,5269,-877,24230827,24236883 -5 + chr11 24248873 24248929 chr11,24248558,24249078,-,MLT2B2,LTR,ERVL,0,515,2,24248558,24249079 +3 - chr11 24258192 24258311 chr11,24258186,24258367,-,MIR,SINE,MIR,-25,237,38,24258161,24258404 +3 - chr11 24259399 24259440 chr11,24259317,24259440,+,Helitron3Na_Mam,RC,Helitron,25,150,-336,24259293,24259776 -5 + chr11 24262081 24262218 chr11,24262002,24262364,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,24262002,24262364 +1 - chr11 25740476 25740560 chr11,25740256,25740745,-,L1M3,LINE,L1,-1001,5139,4634,25739255,25745378 -3 - chr11 25774170 25774305 chr11,25773810,25774305,-,L1MB8,LINE,L1,-198,5980,5497,25773612,25779801 -2 - chr11 25777694 25777791 chr11,25777456,25778001,+,MLT1F2,LTR,ERVL-MaLR,1,558,-2,25777456,25778003 +3 + chr11 25780481 25780622 chr11,25780460,25784968,+,L1PREC2,LINE,L1,1402,5934,-2207,25779059,25787175 +5 + chr11 25781629 25781758 chr11,25780460,25784968,+,L1PREC2,LINE,L1,1402,5934,-2207,25779059,25787175 +5 + chr11 25924188 25924229 chr11,25924173,25924229,-,L1PA16,LINE,L1,-238,5928,5883,25923935,25930111 -1 - chr11 25924232 25924332 chr11,25924232,25924428,+,MLT1G-int,LTR,ERVL-MaLR,1191,1395,-14,25923042,25924442 +4 + chr11 26208046 26208229 chr11,26207906,26208229,-,MLT1A0,LTR,ERVL-MaLR,-12,353,32,26207894,26208260 -2 - chr11 26208229 26208347 chr11,26208229,26208527,+,AluY,SINE,Alu,1,296,-15,26208229,26208542 +5 + chr11 26287328 26287549 chr11,26287297,26287751,-,MIR,SINE,MIR,0,262,5,26287297,26287755 +3 - chr11 27151050 27151152 chr11,27150967,27151361,-,MSTA,LTR,ERVL-MaLR,0,428,1,27150967,27151361 +3 - chr11 27217152 27217237 chr11,27216994,27217237,-,MIR,SINE,MIR,-6,256,8,27216988,27217244 +5 - chr11 27217383 27217480 chr11,27217383,27217555,+,MIR3,SINE,MIR,39,205,-3,27217345,27217558 -2 + chr11 27219687 27219700 chr11,27219547,27219700,+,MIRc,SINE,MIR,32,186,-82,27219516,27219782 -4 + chr11 27219703 27220113 chr11,27219703,27225730,+,L1PA2,LINE,L1,127,6153,-2,27219577,27225732 -1 + chr11 27474418 27474546 chr11,27474414,27474553,-,MIR3,SINE,MIR,-22,186,23,27474392,27474575 -3 - chr11 27475769 27475877 chr11,27475765,27475877,-,MER91A,DNA,hAT-Tip100,-82,114,2,27475683,27475878 -2 - chr11 27476045 27476221 chr11,27476045,27476348,-,L1ME3Cz,LINE,L1,-139,858,529,27475906,27476876 -5 - chr11 27482380 27482433 chr11,27482380,27482688,-,AluSx,SINE,Alu,-6,306,2,27482374,27482689 -5 - chr11 27540020 27540116 chr11,27539836,27540199,+,THE1C,LTR,ERVL-MaLR,14,375,0,27539823,27540199 +3 + chr11 27584269 27584337 chr11,27584140,27584564,+,MLT1J,LTR,ERVL-MaLR,1,413,-99,27584140,27584663 +3 + chr11 27620757 27620875 chr11,27620607,27620914,+,AluJb,SINE,Alu,1,312,0,27620607,27620914 -3 + chr11 27634331 27634476 chr11,27631267,27634476,-,HERVH-int,LTR,ERV1,-4423,3290,1,27626844,27634476 +4 - chr11 27634478 27634627 chr11,27634478,27634926,-,LTR7,LTR,ERV1,-2,448,1,27634476,27634926 +1 - chr11 27659194 27659321 chr11,27659194,27659321,-,MIR3,SINE,MIR,-41,167,23,27659153,27659343 -6 - chr11 27659629 27659649 chr11,27659629,27659663,+,(TG)n,Simple_repeat,Simple_repeat,1,34,0,27659629,27659663 +5 + chr11 27665301 27665392 chr11,27665301,27671022,+,L1PA5,LINE,L1,4,5758,-396,27665298,27671418 +4 + chr11 27677177 27677368 chr11,27677177,27677368,+,L1MC,LINE,L1,5486,5679,-2203,27671692,27679571 +6 + chr11 27677354 27677464 chr11,27677354,27677464,+,L1MC4a,LINE,L1,5845,5941,-1941,27671510,27679405 +6 + chr11 27677464 27677545 chr11,27677464,27677545,+,AluYj4,SINE,Alu,211,291,-20,27677254,27677565 +6 + chr11 27677557 27677782 chr11,27677557,27677782,+,L1ME4b,LINE,L1,679,892,0,27676879,27677782 +6 + chr11 27877502 27877629 chr11,27877422,27877629,-,MIRb,SINE,MIR,-40,228,21,27877382,27877649 +4 - chr11 27978913 27978977 chr11,27978913,27978977,+,GA-rich,Low_complexity,Low_complexity,1,64,0,27978913,27978977 -6 + chr11 27982178 27982207 chr11,27982031,27982207,+,MIRb,SINE,MIR,54,246,-22,27981978,27982229 -4 + chr11 28002426 28002500 chr11,28001426,28002978,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,28001426,28002978 -3 + chr11 28361937 28362004 chr11,28361768,28362004,+,ERV3-16A3_LTR,LTR,ERVL,181,414,-8,28361588,28362012 +2 + chr11 28516832 28516979 chr11,28516542,28516979,-,L2c,LINE,L2,-5,3382,2917,28516537,28519895 -1 - chr11 28519133 28519263 chr11,28519133,28519263,-,MER5A,DNA,hAT-Charlie,-5,184,55,28519128,28519317 -6 - chr11 28519273 28519341 chr11,28519273,28519573,+,AluY,SINE,Alu,1,300,-11,28519273,28519584 +5 + chr11 28526478 28526492 chr11,28526359,28526492,-,L1M4,LINE,L1,-2715,3929,3791,28523644,28530282 -2 - chr11 28526478 28526520 chr11,28526462,28526608,-,L1M4,LINE,L1,-5635,1882,1733,28520827,28528340 -3 - chr11 28526616 28526801 chr11,28526608,28526801,+,MLT1B,LTR,ERVL-MaLR,180,390,0,28526429,28526801 +2 + chr11 28683168 28683186 chr11,28683065,28683186,-,L2a,LINE,L2,-4,3422,3302,28683061,28686487 -2 - chr11 28683374 28683469 chr11,28683374,28683824,+,MER110A,LTR,ERV1,40,471,-20,28683335,28683844 +5 + chr11 28902355 28902369 chr11,28902355,28902595,+,MIRb,SINE,MIR,1,247,-21,28902355,28902616 +4 + chr11 29037795 29037816 chr11,29037795,29038043,+,HAL1,LINE,L1,153,403,-2104,29037643,29040147 +4 + chr11 29044445 29044871 chr11,29044440,29044898,+,L1PA14,LINE,L1,5703,6159,-2,29038738,29044900 +5 + chr11 29059389 29059472 chr11,29059342,29059516,-,L2c,LINE,L2,-12,3375,3219,29059330,29062734 -3 - chr11 29063289 29063821 chr11,29062978,29064092,+,Tigger3b,DNA,TcMar-Tigger,3,1168,-63,29062976,29064155 +5 + chr11 29159956 29159970 chr11,29159865,29159970,+,GA-rich,Low_complexity,Low_complexity,1,104,0,29159865,29159970 +1 + chr11 29159970 29160062 chr11,29159970,29160349,+,THE1D,LTR,ERVL-MaLR,1,381,0,29159970,29160349 +4 + chr11 29160192 29160268 chr11,29159970,29160349,+,THE1D,LTR,ERVL-MaLR,1,381,0,29159970,29160349 +3 + chr11 29211655 29211765 chr11,29211495,29211784,-,LTR101_Mam,LTR,ERVL,-352,477,161,29211143,29211944 -3 - chr11 29261053 29261136 chr11,29260982,29261651,-,L1PA16,LINE,L1,-5248,1605,1178,29255734,29262828 -3 - chr11 29395363 29395436 chr11,29395338,29395436,-,L1MEg1,LINE,L1,-5596,639,548,29389742,29395983 +4 - chr11 29445487 29445570 chr11,29445288,29445654,+,THE1A,LTR,ERVL-MaLR,1,355,0,29445288,29445654 +1 + chr11 29456037 29456116 chr11,29455890,29456175,+,L2c,LINE,L2,2977,3276,-111,29452914,29456286 +3 + chr11 29456375 29456471 chr11,29456302,29456709,-,MLT1C,LTR,ERVL-MaLR,0,467,34,29456302,29456742 -3 - chr11 29457349 29457393 chr11,29457349,29457438,-,MER5A,DNA,hAT-Charlie,0,189,102,29457349,29457539 -5 - chr11 29519076 29519128 chr11,29518505,29519128,+,LTR4,LTR,ERV1,1,593,-3,29518505,29519131 +1 + chr11 29519151 29519358 chr11,29519151,29527353,+,HERV3-int,LTR,ERV1,19,8426,0,29519133,29527353 +4 + chr11 29596806 29596842 chr11,29596670,29596842,+,MER2,DNA,TcMar-Tigger,143,334,-11,29596528,29596853 +2 + chr11 29618802 29618837 chr11,29618471,29618837,-,MLT1B,LTR,ERVL-MaLR,-3,387,1,29618468,29618837 -1 - chr11 29618837 29618859 chr11,29618837,29619809,-,L1ME3,LINE,L1,-1913,4233,3223,29616924,29623031 -4 - chr11 29622673 29622858 chr11,29622673,29622858,+,L1MCc,LINE,L1,142,321,-6102,29622532,29628960 +6 + chr11 29622906 29622987 chr11,29622906,29622987,+,L1MCc,LINE,L1,816,906,-5517,29622091,29628504 +6 + chr11 29622997 29623076 chr11,29622997,29623146,+,MER57A1,LTR,ERV1,1,157,-275,29622997,29623421 +4 + chr11 29713909 29714085 chr11,29712461,29714085,+,LTR12C,LTR,ERV1,3,1579,0,29712459,29714085 +1 + chr11 29881482 29881714 chr11,29881072,29881810,+,LTR8B,LTR,ERV1,1,820,0,29881072,29881810 +5 + chr11 29980404 29980453 chr11,29980404,29980453,+,(AAC)n,Simple_repeat,Simple_repeat,1,53,0,29980404,29980453 -6 + chr11 29980775 29980902 chr11,29980775,29980902,+,MamRep434,DNA,TcMar-Tigger,161,295,-131,29980615,29981033 -6 + chr11 29981061 29981085 chr11,29981061,29981085,+,(ATAA)n,Simple_repeat,Simple_repeat,1,24,0,29981061,29981085 -6 + chr11 29981920 29982057 chr11,29981920,29982057,+,MER5A1,DNA,hAT-Charlie,28,165,-1,29981893,29982058 -6 + chr11 29982157 29982331 chr11,29982157,29982331,-,MER103C,DNA,hAT-Charlie,-19,278,103,29982138,29982433 +6 - chr11 30044164 30044385 chr11,30044164,30044385,-,MLT1F2,LTR,ERVL-MaLR,-44,516,296,30044120,30044680 +6 - chr11 30044432 30044455 chr11,30044432,30044559,-,MIRc,SINE,MIR,-101,167,35,30044331,30044593 +2 - chr11 30084313 30084343 chr11,30084230,30084609,-,MSTA,LTR,ERVL-MaLR,0,428,3,30084230,30084611 +1 - chr11 30429040 30429213 chr11,30429040,30429213,+,MIRb,SINE,MIR,5,179,-89,30429036,30429302 +6 + chr11 30584704 30584740 chr11,30584704,30584740,+,(CCCGAG)n,Simple_repeat,Simple_repeat,1,36,0,30584704,30584740 +6 + chr11 30630059 30630143 chr11,30629983,30630303,+,MLT1L,LTR,ERVL-MaLR,259,592,-18,30629725,30630321 +3 + chr11 30630350 30630508 chr11,30630305,30630624,+,MER44A,DNA,TcMar-Tigger,1,339,0,30630305,30630624 +5 + chr11 31307493 31307521 chr11,31307493,31307521,+,A-rich,Low_complexity,Low_complexity,1,28,0,31307493,31307521 +6 + chr11 31312683 31312813 chr11,31312393,31312830,+,MLT2B1,LTR,ERVL,1,449,-71,31312393,31312901 +3 + chr11 31314464 31314548 chr11,31314373,31314624,-,MLT1E1A,LTR,ERVL-MaLR,-2,678,432,31314371,31315055 -5 - chr11 31689182 31689436 chr11,31689178,31689473,+,AluJr,SINE,Alu,2,312,0,31689177,31689473 -5 + chr11 31727785 31727814 chr11,31727750,31727814,-,MIR3,SINE,MIR,-75,133,67,31727675,31727880 +5 - chr11 32035981 32036009 chr11,32035768,32036009,+,MER103C,DNA,hAT-Charlie,1,228,-69,32035768,32036078 -5 + chr11 32036694 32036732 chr11,32036694,32036732,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,32036694,32036732 -6 + chr11 32040106 32040377 chr11,32040072,32040566,-,MLT1G,LTR,ERVL-MaLR,0,579,1,32040072,32040566 +5 - chr11 32041177 32041212 chr11,32041177,32041212,+,(TTTGC)n,Simple_repeat,Simple_repeat,1,37,0,32041177,32041212 -6 + chr11 32053236 32053260 chr11,32053236,32053270,+,GA-rich,Low_complexity,Low_complexity,1,35,0,32053236,32053270 -1 + chr11 32064912 32064939 chr11,32064731,32065021,-,MLT1I,LTR,ERVL-MaLR,0,411,116,32064731,32065136 -1 - chr11 32072079 32072173 chr11,32072079,32072222,+,MIRc,SINE,MIR,20,175,-93,32072060,32072315 +5 + chr11 32132699 32132786 chr11,32132461,32132828,+,THE1B,LTR,ERVL-MaLR,1,364,0,32132461,32132828 +1 + chr11 32143144 32143236 chr11,32142958,32143236,-,MLT1K,LTR,ERVL-MaLR,-14,581,290,32142944,32143525 -2 - chr11 32143280 32143579 chr11,32143280,32143788,+,LTR72,LTR,ERV1,6,519,0,32143275,32143788 +5 + chr11 32438449 32438515 chr11,32438449,32438515,-,MIR3,SINE,MIR,-57,173,104,32438392,32438618 -6 - chr11 32438531 32438717 chr11,32438531,32438717,+,MIR,SINE,MIR,8,192,-70,32438524,32438787 +5 + chr11 32438770 32438866 chr11,32438770,32438866,-,MIR1_Amn,SINE,MIR,-127,103,5,32438643,32438870 -6 - chr11 32439292 32439329 chr11,32439292,32439329,+,(GCCCCGC)n,Simple_repeat,Simple_repeat,1,37,0,32439292,32439329 +6 + chr11 32440072 32440105 chr11,32440072,32440105,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,32440072,32440105 +6 + chr11 32452021 32452131 chr11,32451725,32452150,-,LTR33,LTR,ERVL,-65,450,24,32451660,32452173 -3 - chr11 32458639 32458751 chr11,32458446,32458751,-,AluY,SINE,Alu,-13,298,1,32458433,32458751 -2 - chr11 33189368 33189482 chr11,33189170,33189482,-,AluY,SINE,Alu,-1,310,1,33189169,33189482 -2 - chr11 33190060 33190111 chr11,33190060,33190111,+,(GAGCTG)n,Simple_repeat,Simple_repeat,1,51,0,33190060,33190111 +6 + chr11 33190586 33190861 chr11,33190586,33190861,-,AluJb,SINE,Alu,-26,286,3,33190560,33190863 -6 - chr11 33190993 33191282 chr11,33190993,33191282,-,AluSx1,SINE,Alu,-22,290,1,33190971,33191282 -6 - chr11 33191559 33191598 chr11,33191559,33191716,+,L1MC4a,LINE,L1,5760,5912,-1970,33185800,33193686 +5 + chr11 33665220 33665564 chr11,33665097,33666353,-,MER52C,LTR,ERV1,0,1278,1,33665097,33666353 +5 - chr11 33696586 33696701 chr11,33696289,33696780,+,L2-3_Crp,LINE,L2,553,1088,-1008,33695737,33697788 -1 + chr11 33775448 33775661 chr11,33775443,33775661,+,MIRb,SINE,MIR,4,262,-6,33775440,33775667 +2 + chr11 33776324 33776340 chr11,33776324,33776558,-,MER96B,DNA,hAT-Tip100,0,417,186,33776324,33776743 -4 - chr11 33805614 33805641 chr11,33805614,33805780,-,MER5A1,DNA,hAT-Charlie,0,166,1,33805614,33805780 -5 - chr11 33814877 33814967 chr11,33814755,33815037,+,MLT1E,LTR,ERVL-MaLR,323,648,-5,33814433,33815042 -5 + chr11 33880643 33880685 chr11,33880312,33880685,+,L1MB3,LINE,L1,5782,6170,-13,33874531,33880698 +1 + chr11 33881770 33881800 chr11,33881770,33881812,+,(AATG)n,Simple_repeat,Simple_repeat,1,43,0,33881770,33881812 +5 + chr11 34533139 34533166 chr11,34533139,34533192,-,L2c,LINE,L2,-35,3340,3293,34533104,34536484 +2 - chr11 34544761 34544816 chr11,34544524,34544816,-,AluSz,SINE,Alu,-6,306,14,34544518,34544829 +4 - chr11 34557797 34557820 chr11,34557703,34557820,-,MLT1I,LTR,ERVL-MaLR,0,411,293,34557703,34558112 +4 - chr11 34557871 34557924 chr11,34557871,34558020,-,MLT1I,LTR,ERVL-MaLR,-215,229,72,34557656,34558091 +1 - chr11 34573705 34573731 chr11,34573705,34573731,+,(TGA)n,Simple_repeat,Simple_repeat,1,27,0,34573705,34573731 +6 + chr11 35132655 35132686 chr11,35132604,35132686,-,MLT1O,LTR,ERVL-MaLR,0,595,481,35132604,35133166 +5 - chr11 35132785 35133026 chr11,35132785,35133026,-,MLT1O,LTR,ERVL-MaLR,-188,354,74,35132597,35133099 +6 - chr11 35210350 35210655 chr11,35210350,35210655,-,L1PREC2,LINE,L1,-3090,3056,2758,35207260,35213412 +6 - chr11 35212832 35212849 chr11,35212832,35213123,-,AluSz,SINE,Alu,-18,294,1,35212814,35213123 -4 - chr11 35213604 35213662 chr11,35213416,35213662,+,AluSx1,SINE,Alu,49,293,-19,35213368,35213681 +2 + chr11 35213692 35213758 chr11,35213692,35213758,+,(TGGTGA)n,Simple_repeat,Simple_repeat,1,67,0,35213692,35213758 +6 + chr11 35285337 35285371 chr11,35285221,35285371,+,MIRc,SINE,MIR,57,218,-50,35285165,35285421 +2 + chr11 35285622 35285738 chr11,35285622,35285738,-,MER102c,DNA,hAT-Charlie,-8,323,200,35285614,35285937 -6 - chr11 35285843 35285892 chr11,35285843,35285892,-,MIR3,SINE,MIR,-59,149,100,35285784,35285991 -6 - chr11 35420659 35420880 chr11,35420659,35420880,+,MIR,SINE,MIR,12,252,-10,35420648,35420890 +6 + chr11 35583999 35584129 chr11,35583716,35584178,-,MLT1J,LTR,ERVL-MaLR,-2,510,8,35583714,35584185 +3 - chr11 35656694 35656786 chr11,35656526,35656786,+,MER39B,LTR,ERV1,151,413,-240,35656376,35657026 +1 + chr11 35656786 35656858 chr11,35656786,35657329,-,MER41A,LTR,ERV1,0,554,1,35656786,35657329 -4 - chr11 35658224 35658400 chr11,35657998,35658996,+,MLT1F-int,LTR,ERVL-MaLR,132,1199,-290,35657867,35659286 +3 + chr11 35918581 35918739 chr11,35918488,35918915,-,MLT1K,LTR,ERVL-MaLR,-17,593,124,35918471,35919038 +1 - chr11 35972710 35972768 chr11,35972710,35972768,-,L1ME4b,LINE,L1,-4,888,833,35972706,35973600 -6 - chr11 35988861 35988882 chr11,35988585,35988882,-,AluSc8,SINE,Alu,-14,297,1,35988571,35988882 -2 - chr11 35988882 35989007 chr11,35988882,35989932,-,L1PA16,LINE,L1,-999,5147,4123,35987883,35994054 -5 - chr11 36197379 36197525 chr11,36197379,36197525,+,MIR,SINE,MIR,2,168,-94,36197378,36197619 +6 + chr11 36197572 36197614 chr11,36197572,36197614,+,(GCT)n,Simple_repeat,Simple_repeat,1,43,0,36197572,36197614 +6 + chr11 36197645 36197748 chr11,36197645,36197748,-,L2b,LINE,L2,-52,3323,3238,36197593,36200985 -6 - chr11 36197765 36197901 chr11,36197765,36198057,+,AluJr,SINE,Alu,1,289,-23,36197765,36198080 +5 + chr11 36321158 36321468 chr11,36321150,36321468,-,MLT1L,LTR,ERVL-MaLR,-48,547,210,36321102,36321677 +5 - chr11 37950773 37950800 chr11,37950773,37950834,+,L2a,LINE,L2,3364,3424,-2,37947410,37950836 +4 + chr11 38013510 38013533 chr11,38013333,38013533,-,L1MCa,LINE,L1,-4741,1767,1558,38008592,38015090 +5 - chr11 38013898 38014111 chr11,38013898,38014111,+,L1MA7,LINE,L1,6072,6291,0,38007827,38014111 -6 + chr11 38498995 38499234 chr11,38498802,38499310,+,MLT2A2,LTR,ERVL,1,453,0,38498802,38499310 +1 + chr11 38499917 38499998 chr11,38499855,38499998,+,MLT1A0,LTR,ERVL-MaLR,1,150,-215,38499855,38500213 +2 + chr11 38500007 38500186 chr11,38500007,38500228,+,MLT1A0,LTR,ERVL-MaLR,162,365,0,38499846,38500228 +5 + chr11 38618264 38618312 chr11,38618031,38618502,+,MLT1F,LTR,ERVL-MaLR,24,546,-2,38618008,38618504 -5 + chr11 38618329 38618417 chr11,38618031,38618502,+,MLT1F,LTR,ERVL-MaLR,24,546,-2,38618008,38618504 -5 + chr11 38646476 38646594 chr11,38646342,38646793,+,MLT1G1,LTR,ERVL-MaLR,90,582,-13,38646253,38646806 +1 + chr11 38646342 38646356 chr11,38646342,38646793,+,MLT1G1,LTR,ERVL-MaLR,90,582,-13,38646253,38646806 -1 + chr11 38648764 38648790 chr11,38648700,38648790,+,MER96B,DNA,hAT-Tip100,142,230,-187,38648559,38648977 +1 + chr11 38648794 38648840 chr11,38648794,38648845,-,L2c,LINE,L2,-73,3314,3260,38648721,38652104 -4 - chr11 40107651 40107746 chr11,40107651,40107746,+,MIRb,SINE,MIR,123,233,-35,40107529,40107781 -6 + chr11 40107967 40108008 chr11,40107967,40108008,+,(ATGAAT)n,Simple_repeat,Simple_repeat,1,41,0,40107967,40108008 -6 + chr11 40108037 40108146 chr11,40108037,40108146,-,MER81,DNA,hAT-Blackjack,-3,111,1,40108034,40108146 +6 - chr11 40108167 40108250 chr11,40108167,40108250,+,L2a,LINE,L2,3341,3422,-4,40104827,40108254 -6 + chr11 40111425 40111460 chr11,40111425,40111460,+,(AC)n,Simple_repeat,Simple_repeat,1,35,0,40111425,40111460 -6 + chr11 41394595 41394693 chr11,41394584,41394693,+,MIR,SINE,MIR,155,267,-1,41394430,41394694 +1 + chr11 41423911 41423946 chr11,41423852,41423946,+,THE1B,LTR,ERVL-MaLR,1,109,-266,41423852,41424212 +2 + chr11 41423930 41423979 chr11,41423930,41424062,+,THE1B,LTR,ERVL-MaLR,240,365,0,41423691,41424062 +4 + chr11 41519064 41519164 chr11,41519064,41519221,+,LTR79,LTR,ERVL,361,527,0,41518704,41519221 -2 + chr11 41589419 41589645 chr11,41589368,41589721,+,MLT1A0,LTR,ERVL-MaLR,1,363,-2,41589368,41589723 -3 + chr11 41714568 41714603 chr11,41714444,41714603,+,MLT1G1,LTR,ERVL-MaLR,99,310,-269,41714346,41714872 +1 + chr11 41718306 41718427 chr11,41718273,41718572,-,AluSg,SINE,Alu,-1,309,11,41718272,41718582 -3 - chr11 41826151 41826277 chr11,41825940,41826866,-,LTR1D,LTR,ERV1,0,975,1,41825940,41826866 -5 - chr11 41856328 41856554 chr11,41856193,41856625,+,MSTB1,LTR,ERVL-MaLR,1,432,0,41856193,41856625 +1 + chr11 41861951 41862106 chr11,41861843,41862106,+,MLT1K,LTR,ERVL-MaLR,11,252,-343,41861833,41862449 +2 + chr11 41862244 41862330 chr11,41862244,41862386,+,MLT1K,LTR,ERVL-MaLR,453,593,-2,41861792,41862388 +5 + chr11 41875947 41875997 chr11,41875947,41875998,+,(TAA)n,Simple_repeat,Simple_repeat,1,53,0,41875947,41875998 +5 + chr11 42110507 42110597 chr11,42110027,42110995,-,L2c,LINE,L2,0,3387,2282,42110027,42113276 +3 - chr11 42126615 42126699 chr11,42126512,42126955,+,L2,LINE,L2,2233,2696,-723,42124280,42127678 -3 + chr11 42163808 42163851 chr11,42163405,42164445,+,L1ME1,LINE,L1,5051,6111,-68,42158355,42164513 -1 + chr11 42183292 42183390 chr11,42183033,42183394,-,L1ME2,LINE,L1,-213,5951,5575,42182820,42188968 +5 - chr11 42187615 42187710 chr11,42187563,42187710,+,L2a,LINE,L2,2904,3049,-370,42184660,42188080 -4 + chr11 42187741 42187778 chr11,42187741,42187819,+,L2a,LINE,L2,3338,3422,-4,42184404,42187823 -2 + chr11 42202334 42202504 chr11,42202279,42202625,-,MLT1A0,LTR,ERVL-MaLR,0,365,13,42202279,42202637 +3 - chr11 42214795 42214824 chr11,42214417,42214824,+,MSTB,LTR,ERVL-MaLR,28,426,0,42214390,42214824 -5 + chr11 42214826 42214946 chr11,42214826,42214946,+,L1M4,LINE,L1,4936,5058,-1586,42209891,42216532 -6 + chr11 43329060 43329338 chr11,43329060,43329376,+,AluJr,SINE,Alu,2,312,0,43329059,43329376 -2 + chr11 43385615 43385671 chr11,43385599,43385727,+,FLAM_A,SINE,Alu,5,132,-10,43385595,43385737 -1 + chr11 43390283 43390332 chr11,43390024,43390332,+,AluJr4,SINE,Alu,1,290,-22,43390024,43390354 +1 + chr11 43395364 43395399 chr11,43395099,43395399,-,AluY,SINE,Alu,-11,300,1,43395088,43395399 -2 - chr11 43833254 43833425 chr11,43833254,43833572,-,MLT1J1,LTR,ERVL-MaLR,0,448,36,43833254,43833607 +2 - chr11 43874660 43874871 chr11,43874660,43874871,-,ERVL-E-int,LTR,ERVL,-463,5204,4996,43874197,43879866 +6 - chr11 43874868 43874929 chr11,43874868,43875603,-,ERVL-E-int,LTR,ERVL,-842,4825,4037,43874026,43879639 +2 - chr11 43877983 43878076 chr11,43877649,43878914,-,ERVL-E-int,LTR,ERVL,-3867,1800,507,43873782,43879420 +1 - chr11 43880574 43880603 chr11,43880536,43880603,-,L3,LINE,CR1,-110,3989,3923,43880426,43884525 +4 - chr11 43910249 43910349 chr11,43910249,43910349,+,L2a,LINE,L2,3279,3387,0,43906971,43910349 -6 + chr11 43910355 43910513 chr11,43910355,43910844,+,L2,LINE,L2,2289,2777,-642,43908067,43911486 -2 + chr11 43922213 43922275 chr11,43922162,43922362,-,MIRb,SINE,MIR,-39,229,9,43922123,43922370 -3 - chr11 43933365 43933410 chr11,43933365,43933515,+,MIRc,SINE,MIR,37,184,-84,43933329,43933599 +5 + chr11 43943937 43943991 chr11,43943937,43943991,+,G-rich,Low_complexity,Low_complexity,1,58,0,43943937,43943991 -6 + chr11 43945564 43945676 chr11,43945564,43945877,+,AluJb,SINE,Alu,2,311,-1,43945563,43945878 -2 + chr11 43947052 43947206 chr11,43946971,43947375,-,MSTB,LTR,ERVL-MaLR,0,426,1,43946971,43947375 +1 - chr11 43971443 43971527 chr11,43971323,43971572,-,MIR,SINE,MIR,-2,260,2,43971321,43971573 -3 - chr11 43973998 43974080 chr11,43973998,43974112,+,L2a,LINE,L2,3254,3423,-3,43970745,43974115 +4 + chr11 43995416 43995491 chr11,43995416,43995836,-,L2b,LINE,L2,-61,3314,2856,43995355,43998691 -4 - chr11 44001099 44001157 chr11,44001070,44001198,-,L2b,LINE,L2,-18,3357,3226,44001052,44004423 -5 - chr11 44071462 44071518 chr11,44071401,44071518,+,MIR3,SINE,MIR,11,138,-130,44071391,44071648 +1 + chr11 44071594 44071724 chr11,44071594,44072009,-,MER63B,DNA,hAT-Blackjack,-2,434,1,44071592,44072009 -4 - chr11 44072203 44072403 chr11,44072148,44072455,-,AluSg,SINE,Alu,0,310,1,44072148,44072455 -5 - chr11 44468464 44468476 chr11,44468419,44468476,+,MLT1K,LTR,ERVL-MaLR,540,595,0,44467880,44468476 +1 + chr11 44469483 44469497 chr11,44469291,44469497,-,MIRb,SINE,MIR,-56,212,4,44469235,44469500 -2 - chr11 44604508 44604536 chr11,44604327,44604536,+,MIRb,SINE,MIR,19,261,-1,44604309,44604537 -5 + chr11 44604623 44604730 chr11,44604623,44604868,-,L2a,LINE,L2,-8,3418,3171,44604615,44608038 +2 - chr11 44606214 44606460 chr11,44606214,44606487,+,AluJb,SINE,Alu,6,302,-10,44606209,44606497 -2 + chr11 44606671 44606768 chr11,44606646,44606774,-,MIRb,SINE,MIR,-8,260,117,44606638,44606890 +3 - chr11 44606853 44606934 chr11,44606847,44606948,-,MIRb,SINE,MIR,-34,234,132,44606813,44607079 +3 - chr11 44695126 44695254 chr11,44695126,44695254,-,L1ME3F,LINE,L1,-84,6159,6026,44695042,44701279 +6 - chr11 44695262 44695435 chr11,44695262,44695435,-,MLT1K,LTR,ERVL-MaLR,-360,235,71,44694902,44695505 +6 - chr11 44696221 44696264 chr11,44696076,44696264,+,MIR,SINE,MIR,34,243,-19,44696043,44696283 -4 + chr11 44719392 44719500 chr11,44719392,44719500,-,L2a,LINE,L2,-47,3340,3228,44719345,44722727 +5 - chr11 44719456 44719537 chr11,44719456,44719537,+,MIRb,SINE,MIR,166,256,-6,44719291,44719543 -6 + chr11 44736175 44736248 chr11,44736100,44736248,+,MIRc,SINE,MIR,80,241,-27,44736021,44736275 -4 + chr11 44974796 44974893 chr11,44974756,44974918,-,AluSc8,SINE,Alu,-18,293,133,44974738,44975050 -3 - chr11 44977488 44977590 chr11,44977436,44977590,+,LTR104_Mam,LTR,Gypsy,1054,1216,-293,44976383,44977883 +2 + chr11 44977670 44977716 chr11,44977670,44977716,+,(CA)n,Simple_repeat,Simple_repeat,1,47,0,44977670,44977716 +6 + chr11 45253884 45253907 chr11,45253748,45254095,+,MLT1J2,LTR,ERVL-MaLR,1,358,-90,45253748,45254185 +1 + chr11 45253982 45254062 chr11,45253748,45254095,+,MLT1J2,LTR,ERVL-MaLR,1,358,-90,45253748,45254185 +1 + chr11 45365855 45366019 chr11,45365855,45366019,+,MIRb,SINE,MIR,69,244,-24,45365787,45366043 +6 + chr11 45371619 45371638 chr11,45371619,45371638,+,(GAG)n,Simple_repeat,Simple_repeat,1,19,0,45371619,45371638 +6 + chr11 45371956 45371993 chr11,45371956,45371993,-,MIR,SINE,MIR,-8,254,218,45371948,45372210 -6 - chr11 45372219 45372315 chr11,45372219,45372315,-,MIRb,SINE,MIR,-72,196,98,45372147,45372412 -6 - chr11 45372315 45372610 chr11,45372315,45372610,-,AluSx,SINE,Alu,-15,297,1,45372300,45372610 -6 - chr11 45372610 45372682 chr11,45372610,45372682,-,MIRb,SINE,MIR,-171,97,29,45372439,45372710 -6 - chr11 45379413 45379587 chr11,45379413,45379817,-,L3,LINE,CR1,-117,3982,3470,45379296,45383286 -4 - chr11 45380089 45380138 chr11,45380089,45380295,+,MIRb,SINE,MIR,1,244,-24,45380089,45380319 +4 + chr11 45387876 45388099 chr11,45387676,45388099,+,MLT1H,LTR,ERVL-MaLR,19,549,0,45387658,45388099 +2 + chr11 45388142 45388178 chr11,45388142,45388178,+,MLT1G1,LTR,ERVL-MaLR,532,567,-12,45387611,45388190 +6 + chr11 45388297 45388505 chr11,45388297,45388505,+,MIRb,SINE,MIR,1,226,-42,45388297,45388547 +6 + chr11 45399448 45399565 chr11,45399136,45400061,-,MER21C,LTR,ERVL,-4,934,1,45399132,45400061 -1 - chr11 45513273 45513291 chr11,45512722,45513291,+,L2a,LINE,L2,2766,3426,0,45509957,45513291 -4 + chr11 45513461 45513613 chr11,45513461,45513613,-,L2b,LINE,L2,0,3375,3238,45513461,45516850 +6 - chr11 45513618 45513753 chr11,45513618,45513753,-,MIRb,SINE,MIR,-90,178,17,45513528,45513769 +6 - chr11 45531445 45531617 chr11,45531445,45531686,+,MIRc,SINE,MIR,2,261,-7,45531444,45531693 -2 + chr11 45532853 45532880 chr11,45532853,45532894,+,MIR3,SINE,MIR,104,147,-61,45532750,45532955 -2 + chr11 45532863 45532880 chr11,45532863,45532961,+,MIRb,SINE,MIR,123,229,-39,45532741,45533000 -2 + chr11 45533057 45533125 chr11,45533057,45533180,+,MIRc,SINE,MIR,103,250,-18,45532955,45533198 -2 + chr11 45541154 45541269 chr11,45541154,45541414,+,AluJb,SINE,Alu,1,289,-23,45541154,45541437 -2 + chr11 45583116 45583474 chr11,45582961,45583516,+,MLT1G3,LTR,ERVL-MaLR,1,595,0,45582961,45583516 +5 + chr11 45733994 45734034 chr11,45733738,45734034,+,L2c,LINE,L2,2910,3238,-149,45730829,45734183 -5 + chr11 45734541 45734799 chr11,45734448,45734827,+,MLT1G3,LTR,ERVL-MaLR,135,506,-42,45734314,45734869 +3 + chr11 45734448 45734790 chr11,45734448,45734827,+,MLT1G3,LTR,ERVL-MaLR,135,506,-42,45734314,45734869 -2 + chr11 45739410 45739540 chr11,45739381,45739540,-,FLAM_C,SINE,Alu,0,301,6,45739381,45739545 -2 - chr11 45750823 45750836 chr11,45750622,45750836,-,L2b,LINE,L2,-731,2688,2468,45749891,45753303 +5 - chr11 45823861 45823880 chr11,45823389,45823880,+,HERV1_LTRc,LTR,ERV1,1,491,0,45823389,45823880 +2 + chr11 45823880 45823945 chr11,45823880,45823945,-,MIR3,SINE,MIR,-124,84,19,45823756,45823963 -6 - chr11 45825128 45825178 chr11,45825020,45825178,-,MIR,SINE,MIR,0,262,81,45825020,45825258 -2 - chr11 45825201 45825258 chr11,45825201,45825655,+,MER89,LTR,ERV1,2,555,-4,45825200,45825659 +5 + chr11 45906117 45906157 chr11,45906117,45906157,+,(TGCCCC)n,Simple_repeat,Simple_repeat,1,43,0,45906117,45906157 -6 + chr11 46116681 46116726 chr11,46116681,46116988,+,AluSx1,SINE,Alu,1,304,-8,46116681,46116996 +4 + chr11 46116863 46116988 chr11,46116681,46116988,+,AluSx1,SINE,Alu,1,304,-8,46116681,46116996 +2 + chr11 46117123 46117169 chr11,46117123,46117169,-,MIRc,SINE,MIR,-33,235,190,46117090,46117358 -6 - chr11 46171947 46172024 chr11,46171722,46172107,+,THE1C,LTR,ERVL-MaLR,1,375,0,46171722,46172107 +1 + chr11 46176620 46176714 chr11,46176620,46176714,+,MIR,SINE,MIR,60,162,-100,46176561,46176814 +6 + chr11 46176714 46177105 chr11,46176714,46177138,+,LTR16,LTR,ERVL,1,436,-2,46176714,46177140 +5 + chr11 46213821 46214224 chr11,46213821,46214230,-,HAL1,LINE,L1,-625,1703,1239,46213196,46215468 +5 - chr11 46238739 46238832 chr11,46238630,46238832,-,MIR,SINE,MIR,-1,261,34,46238629,46238865 -2 - chr11 46238836 46239023 chr11,46238836,46239023,-,MIR,SINE,MIR,-78,184,4,46238758,46239026 -6 - chr11 46256355 46256541 chr11,46256309,46256591,-,MLT1J,LTR,ERVL-MaLR,-2,510,204,46256307,46256794 +5 - chr11 46274381 46274400 chr11,46274366,46274400,-,MIR1_Amn,SINE,MIR,-128,102,70,46274238,46274469 +4 - chr11 46846642 46846717 chr11,46846642,46846869,+,MIRc,SINE,MIR,2,250,-18,46846641,46846887 +4 + chr11 46852852 46852946 chr11,46852656,46852967,-,AluJr,SINE,Alu,-2,310,2,46852654,46852968 -3 - chr11 46873675 46873783 chr11,46873675,46873783,+,L2c,LINE,L2,3276,3386,-1,46870400,46873784 +6 + chr11 46873986 46874105 chr11,46873986,46874105,-,AluJo,SINE,Alu,-193,119,1,46873793,46874105 -6 - chr11 47123180 47123341 chr11,47123180,47123439,-,MER102a,DNA,hAT-Charlie,-2,328,39,47123178,47123477 +2 - chr11 47168522 47168586 chr11,47168522,47168821,-,AluSz6,SINE,Alu,-14,298,2,47168508,47168822 +2 - chr11 47169296 47169329 chr11,47169032,47169329,+,AluY,SINE,Alu,2,297,-14,47169031,47169343 -4 + chr11 47221690 47221744 chr11,47221439,47221744,-,AluSx1,SINE,Alu,-7,305,1,47221432,47221744 +4 - chr11 47383258 47383352 chr11,47383258,47383352,-,MIR3,SINE,MIR,-139,129,35,47383119,47383386 +6 - chr11 47383368 47383471 chr11,47383368,47383471,+,G-rich,Low_complexity,Low_complexity,1,110,0,47383368,47383471 -6 + chr11 47409105 47409190 chr11,47409105,47409195,-,MIR1_Amn,SINE,MIR,-114,154,58,47408991,47409252 +1 - chr11 47513605 47513754 chr11,47513464,47513754,-,AluY,SINE,Alu,-17,294,1,47513447,47513754 +5 - chr11 47513925 47513994 chr11,47513925,47514224,-,AluSz,SINE,Alu,-9,303,1,47513916,47514224 +2 - chr11 47514850 47514880 chr11,47514573,47514880,+,AluJo,SINE,Alu,1,302,-10,47514573,47514890 -4 + chr11 48014406 48014466 chr11,48014232,48014466,+,MER103C,DNA,hAT-Charlie,62,292,-5,48014171,48014471 -5 + chr11 48014466 48014593 chr11,48014466,48014593,-,L2a,LINE,L2,-1,3425,3297,48014465,48017889 +6 - chr11 48014606 48014677 chr11,48014606,48014697,-,MIRb,SINE,MIR,-16,252,157,48014590,48014853 +2 - chr11 48015827 48015855 chr11,48015594,48015879,+,AluSz,SINE,Alu,1,308,-4,48015594,48015883 -1 + chr11 50298847 50298917 chr11,50298847,50298953,+,AluJo,SINE,Alu,199,304,-8,50298649,50298961 +4 + chr11 50303139 50303262 chr11,50303118,50303386,-,AluSc,SINE,Alu,-19,290,11,50303099,50303396 -3 - chr11 50304581 50304656 chr11,50304560,50304850,-,AluSq2,SINE,Alu,-13,300,1,50304547,50304850 -5 - chr11 55685901 55686160 chr11,55685638,55691665,+,L1PA2,LINE,L1,124,6150,-5,55685515,55691670 -1 + chr11 56848566 56848615 chr11,56848566,56849571,+,Tigger12,DNA,TcMar-Tigger,136,1118,-1357,56848431,56850928 +1 + chr11 56871091 56871251 chr11,56870893,56872134,+,MER4-int,LTR,ERV1,5353,6596,-2,56865541,56872136 +3 + chr11 56874724 56874843 chr11,56874605,56874937,+,L2,LINE,L2,2656,2997,-422,56871950,56875359 +3 + chr11 56875700 56875939 chr11,56875700,56875939,+,MIRc,SINE,MIR,3,256,-12,56875698,56875951 +6 + chr11 56875956 56876186 chr11,56875956,56876186,-,MIR,SINE,MIR,-20,242,5,56875936,56876190 -6 - chr11 56876246 56876382 chr11,56876246,56876382,+,MIR3,SINE,MIR,37,187,-21,56876210,56876403 +6 + chr11 56876589 56876669 chr11,56876589,56876669,-,Charlie19a,DNA,hAT-Charlie,-11,375,297,56876578,56876965 -6 - chr11 56876967 56877190 chr11,56876967,56877190,+,MER20,DNA,hAT-Charlie,1,219,0,56876967,56877190 +6 + chr11 56877393 56878078 chr11,56877393,56878255,-,L1MD2,LINE,L1,-2,6357,5517,56877391,56883771 -5 - chr11 57327870 57327958 chr11,57327870,57328061,+,L2c,LINE,L2,3149,3346,-41,57324722,57328102 +5 + chr11 57650628 57651452 chr11,57650628,57651452,+,HERVL-int,LTR,ERVL,4823,5654,0,57645806,57651452 +5 + chr11 57651453 57651896 chr11,57651453,57651896,+,MLT2A2,LTR,ERVL,2,451,-2,57651452,57651898 +6 + chr11 57651936 57652164 chr11,57651936,57652164,+,MIRb,SINE,MIR,35,265,-3,57651902,57652167 +6 + chr11 57652180 57652497 chr11,57652180,57652497,+,AluSc5,SINE,Alu,2,292,-17,57652179,57652514 +6 + chr11 57652505 57652790 chr11,57652505,57652820,+,AluSx,SINE,Alu,1,312,0,57652505,57652820 +5 + chr11 58044560 58044666 chr11,58044560,58044666,+,(TCTCTT)n,Simple_repeat,Simple_repeat,1,108,0,58044560,58044666 -6 + chr11 58044685 58044778 chr11,58044685,58044778,-,L2b,LINE,L2,-35,3340,3237,58044650,58048014 +6 - chr11 58044764 58044875 chr11,58044764,58044875,+,MIRb,SINE,MIR,35,155,-113,58044730,58044988 -6 + chr11 58044875 58045209 chr11,58044875,58045209,+,Tigger4b,DNA,TcMar-Tigger,2,357,-4,58044874,58045213 -6 + chr11 58045209 58045228 chr11,58045209,58045228,+,MIRb,SINE,MIR,156,165,-103,58045054,58045331 -6 + chr11 58045228 58045342 chr11,58045228,58045533,-,AluSz,SINE,Alu,-8,304,1,58045220,58045533 +2 - chr11 58059926 58060126 chr11,58059905,58060126,+,LTR33,LTR,ERVL,2,248,-267,58059904,58060393 -4 + chr11 58497917 58498004 chr11,58497917,58498272,-,LTR16A,LTR,ERVL,-2,449,109,58497915,58498380 +5 - chr11 58498173 58498272 chr11,58497917,58498272,-,LTR16A,LTR,ERVL,-2,449,109,58497915,58498380 +5 - chr11 58502881 58503036 chr11,58502881,58503040,-,MIRc,SINE,MIR,-44,224,57,58502837,58503096 +1 - chr11 58503756 58503816 chr11,58503756,58503816,+,MIRc,SINE,MIR,85,144,-124,58503672,58503940 -2 + chr11 58611648 58611695 chr11,58611648,58611695,+,(GAAGTG)n,Simple_repeat,Simple_repeat,1,47,0,58611648,58611695 -6 + chr11 58612190 58612208 chr11,58612190,58612208,+,(GT)n,Simple_repeat,Simple_repeat,1,18,0,58612190,58612208 -6 + chr11 58628106 58628146 chr11,58628106,58628146,+,(TG)n,Simple_repeat,Simple_repeat,1,40,0,58628106,58628146 +6 + chr11 58917015 58917191 chr11,58916700,58917191,-,MER51A,LTR,ERV1,0,640,117,58916700,58917307 +5 - chr11 58928317 58928383 chr11,58927656,58928383,-,HERVK22-int,LTR,ERVK,-6083,754,32,58921573,58928414 +4 - chr11 58928450 58928493 chr11,58928450,58928493,-,LTR22,LTR,ERVK,-21,579,536,58928429,58929028 +6 - chr11 58928567 58928689 chr11,58928567,58929132,-,LTR22,LTR,ERVK,-7,564,1,58928560,58929132 +1 - chr11 58933643 58935621 chr11,58933502,58935621,-,L1M3e,LINE,L1,-4917,2113,1,58928585,58935621 +5 - chr11 58958217 58958293 chr11,58957939,58958293,-,MLT1A,LTR,ERVL-MaLR,-4,370,4,58957935,58958296 +5 - chr11 58958293 58958323 chr11,58958293,58958323,+,L1MEh,LINE,L1,2180,2208,-4,58956114,58958327 -6 + chr11 58958463 58958592 chr11,58958463,58958592,+,L1M5,LINE,L1,2458,2590,-3556,58956006,58962148 -6 + chr11 58958809 58958820 chr11,58958809,58959062,+,LTR9D,LTR,ERV1,1,243,-402,58958809,58959464 -2 + chr11 58968942 58969073 chr11,58968909,58969403,-,LTR40a,LTR,ERVL,0,519,2,58968909,58969404 +5 - chr11 59053615 59053626 chr11,59053615,59053863,+,LTR9D,LTR,ERV1,1,247,-398,59053615,59054261 -2 + chr11 59130254 59130300 chr11,59130254,59130493,-,THE1C-int,LTR,ERVL-MaLR,-950,681,442,59129304,59130934 +2 - chr11 59134224 59134275 chr11,59134193,59134275,-,MamRep1527,LTR,LTR,-97,872,792,59134096,59135066 +4 - chr11 59134783 59134977 chr11,59134783,59134977,+,L2c,LINE,L2,3125,3348,-39,59131659,59135016 -6 + chr11 59135188 59135556 chr11,59135188,59135556,-,MamRep1527,LTR,LTR,-331,638,291,59134857,59135846 +5 - chr11 59139793 59139834 chr11,59139793,59139834,+,A-rich,Low_complexity,Low_complexity,1,41,0,59139793,59139834 -6 + chr11 59139934 59140167 chr11,59139934,59140188,+,AluSx,SINE,Alu,1,302,-10,59139934,59140198 -1 + chr11 59268876 59269031 chr11,59268825,59269031,-,MLT1A0,LTR,ERVL-MaLR,0,365,134,59268825,59269164 +5 - chr11 59269033 59269158 chr11,59269033,59269158,+,AluJb,SINE,Alu,1,124,-188,59269033,59269346 -6 + chr11 59269451 59269548 chr11,59269451,59269548,+,L1MEj,LINE,L1,727,828,-1400,59268725,59270948 -6 + chr11 59269585 59270158 chr11,59269585,59270158,+,L1MEj,LINE,L1,893,1502,-726,59268693,59270884 -6 + chr11 59270361 59270424 chr11,59270361,59270424,+,L1MEj,LINE,L1,1987,2049,-179,59268375,59270603 -6 + chr11 59270486 59270588 chr11,59270486,59270588,+,L1MEj,LINE,L1,2153,2339,-3875,59268334,59274463 -6 + chr11 59270588 59270896 chr11,59270588,59270896,+,AluJo,SINE,Alu,1,304,-8,59270588,59270904 -6 + chr11 59270896 59271107 chr11,59270896,59271107,+,L1MEj,LINE,L1,2339,2545,-3670,59268558,59274777 -6 + chr11 59271135 59271241 chr11,59271135,59271241,+,MIR,SINE,MIR,28,143,-119,59271108,59271360 -6 + chr11 59271415 59271490 chr11,59271415,59271490,+,MIRc,SINE,MIR,102,184,-84,59271314,59271574 -6 + chr11 59561187 59561243 chr11,59561187,59561430,-,MER34A1,LTR,ERV1,0,587,328,59561187,59561757 +2 - chr11 59563814 59563906 chr11,59563792,59564092,+,AluJo,SINE,Alu,2,301,-11,59563791,59564103 -3 + chr11 59565453 59565568 chr11,59565307,59565601,+,AluSx,SINE,Alu,1,312,0,59565307,59565601 -3 + chr11 59565765 59565865 chr11,59565731,59565865,-,AluSz,SINE,Alu,-179,133,1,59565552,59565865 +4 - chr11 59620434 59620472 chr11,59620434,59620587,-,L2a,LINE,L2,-441,2978,2826,59619993,59623412 -4 - chr11 59675397 59675655 chr11,59674987,59675655,-,Tigger1,DNA,TcMar-Tigger,-121,2297,1615,59674866,59677269 -2 - chr11 59675699 59676041 chr11,59675699,59676374,+,MER21A,LTR,ERVL,121,925,-6,59675579,59676380 +5 + chr11 59753015 59753046 chr11,59752829,59753046,+,LTR37A,LTR,ERV1,31,222,-204,59752799,59753250 -5 + chr11 59753046 59753197 chr11,59753046,59753335,-,AluSz,SINE,Alu,-25,287,1,59753021,59753335 +2 - chr11 60649168 60649310 chr11,60648916,60649608,+,L1M4,LINE,L1,2,757,-6760,60648915,60656368 +3 + chr11 60813932 60814120 chr11,60813894,60814203,-,Charlie15b,DNA,hAT-Charlie,-25,1036,684,60813869,60814886 +5 - chr11 60835996 60836059 chr11,60835884,60836059,+,MIRc,SINE,MIR,20,200,-68,60835865,60836127 -5 + chr11 60836039 60836147 chr11,60836039,60836188,+,L2a,LINE,L2,3262,3426,0,60832778,60836188 -2 + chr11 60850947 60851081 chr11,60850947,60851147,-,L2a,LINE,L2,-15,3411,3184,60850932,60854330 +1 - chr11 60906806 60906872 chr11,60906806,60906872,-,MER5A,DNA,hAT-Charlie,-3,186,122,60906803,60906993 -6 - chr11 60907079 60907117 chr11,60907079,60907117,-,LTR54,LTR,ERV1,0,510,473,60907079,60907589 -6 - chr11 60907117 60907282 chr11,60907117,60907287,-,FAM,SINE,Alu,-13,172,17,60907104,60907303 -4 - chr11 60909427 60909706 chr11,60909359,60909706,+,LTR45,LTR,ERV1,1,353,-172,60909359,60909878 +2 + chr11 60909706 60909742 chr11,60909706,60910060,-,THE1B,LTR,ERVL-MaLR,0,364,1,60909706,60910060 -5 - chr11 60913166 60913477 chr11,60912641,60913600,-,LTR1D,LTR,ERV1,0,975,3,60912641,60913602 +5 - chr11 60918469 60918594 chr11,60918249,60918594,-,MSTD,LTR,ERVL-MaLR,0,396,40,60918249,60918633 +5 - chr11 60918594 60918614 chr11,60918594,60918614,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,60918594,60918614 -6 + chr11 60918816 60918982 chr11,60918816,60918982,+,MER5B,DNA,hAT-Charlie,1,176,-2,60918816,60918984 -6 + chr11 60918999 60919153 chr11,60918999,60919178,+,MIRb,SINE,MIR,25,204,-64,60918975,60919242 -2 + chr11 61143380 61143660 chr11,61143362,61143660,-,AluSx1,SINE,Alu,0,312,1,61143362,61143660 +5 - chr11 61143662 61143959 chr11,61143662,61143959,-,AluSp,SINE,Alu,-15,298,1,61143647,61143959 +6 - chr11 61143968 61144268 chr11,61143968,61144268,-,AluY,SINE,Alu,-12,299,1,61143956,61144268 +6 - chr11 61144920 61145016 chr11,61144920,61145016,+,MIR3,SINE,MIR,38,145,-63,61144883,61145079 -6 + chr11 61144982 61145028 chr11,61144982,61145028,+,MIRc,SINE,MIR,116,161,-107,61144867,61145135 -6 + chr11 61352244 61352321 chr11,61352194,61352321,+,MIR,SINE,MIR,12,137,-125,61352183,61352446 +1 + chr11 61352359 61352379 chr11,61352359,61352379,+,(CAATGA)n,Simple_repeat,Simple_repeat,1,20,0,61352359,61352379 +6 + chr11 61352379 61352681 chr11,61352379,61352681,+,AluSx3,SINE,Alu,1,302,-9,61352379,61352690 +6 + chr11 61352681 61352693 chr11,61352681,61352693,+,(CAATGA)n,Simple_repeat,Simple_repeat,3,14,0,61352679,61352693 +6 + chr11 61352704 61352800 chr11,61352704,61352800,+,MIRb,SINE,MIR,158,264,-4,61352547,61352804 +6 + chr11 61354208 61354347 chr11,61354208,61354347,+,FRAM,SINE,Alu,1,137,-39,61354208,61354386 +6 + chr11 61354384 61354477 chr11,61354384,61354648,+,AluJr,SINE,Alu,1,293,-19,61354384,61354667 +5 + chr11 61426745 61427052 chr11,61426745,61427052,+,AluSc,SINE,Alu,1,305,-4,61426745,61427056 -6 + chr11 61427103 61427225 chr11,61427103,61427225,+,FLAM_C,SINE,Alu,3,212,-90,61427101,61427315 -6 + chr11 61500041 61500076 chr11,61500041,61500196,-,MamGypLTR2c,LTR,Gypsy,-885,183,2,61499156,61500197 -5 - chr11 61525708 61525772 chr11,61525083,61525772,+,L2b,LINE,L2,2650,3375,0,61522434,61525772 -5 + chr11 61526393 61526602 chr11,61526393,61526655,+,L2b,LINE,L2,3089,3366,-9,61523305,61526664 -1 + chr11 61540375 61540514 chr11,61540375,61540514,+,MER58C,DNA,hAT-Charlie,56,215,0,61540320,61540514 -6 + chr11 61596893 61596979 chr11,61596838,61597027,-,MIR,SINE,MIR,-72,190,4,61596766,61597030 -3 - chr11 61602518 61602570 chr11,61602437,61602570,+,MIRb,SINE,MIR,42,184,-84,61602396,61602654 +2 + chr11 61605495 61605607 chr11,61605460,61605607,-,MIR,SINE,MIR,-100,162,12,61605360,61605618 -2 - chr11 61605842 61605876 chr11,61605842,61605876,+,(CTCACT)n,Simple_repeat,Simple_repeat,1,34,0,61605842,61605876 +6 + chr11 61605890 61605958 chr11,61605890,61605958,+,L2c,LINE,L2,3026,3094,-293,61602865,61606251 +6 + chr11 61606050 61606170 chr11,61606050,61606170,+,MIRc,SINE,MIR,38,183,-85,61606013,61606255 +6 + chr11 61607362 61607550 chr11,61607362,61607729,-,L1ME4b,LINE,L1,-3,889,513,61607359,61608241 -5 - chr11 61654665 61654728 chr11,61654624,61654728,+,LTR79,LTR,ERVL,88,200,-327,61654537,61655055 -5 + chr11 61654876 61654981 chr11,61654876,61654981,+,LTR79,LTR,ERVL,422,527,0,61654455,61654981 -6 + chr11 61655012 61655071 chr11,61655012,61655976,-,LTR5_Hs,LTR,ERVK,0,968,1,61655012,61655976 +1 - chr11 61655648 61655702 chr11,61655012,61655976,-,LTR5_Hs,LTR,ERVK,0,968,1,61655012,61655976 +1 - chr11 61747351 61747403 chr11,61747250,61747403,-,MER5A1,DNA,hAT-Charlie,-4,162,1,61747246,61747403 +4 - chr11 61757232 61757363 chr11,61757232,61757478,+,MIRb,SINE,MIR,1,242,-20,61757232,61757498 -2 + chr11 61968936 61969206 chr11,61968936,61969206,-,L2b,LINE,L2,-147,3240,2979,61968789,61972184 -6 - chr11 61969206 61969490 chr11,61969206,61969520,+,AluSq2,SINE,Alu,1,313,0,61969206,61969520 +5 + chr11 62077277 62077452 chr11,62077230,62077452,-,MLT1A0,LTR,ERVL-MaLR,0,365,144,62077230,62077595 +5 - chr11 62081656 62081930 chr11,62081656,62081930,+,L2c,LINE,L2,3039,3336,-51,62078618,62081981 -6 + chr11 62214476 62214519 chr11,62214377,62214519,-,MER96B,DNA,hAT-Tip100,-238,179,46,62214139,62214564 +4 - chr11 62260498 62260549 chr11,62260252,62260827,+,MER41D,LTR,ERV1,1,557,0,62260252,62260827 -1 + chr11 62336911 62337198 chr11,62336901,62337198,-,AluSp,SINE,Alu,-16,297,1,62336885,62337198 +5 - chr11 62537312 62537466 chr11,62537259,62537538,-,AluJb,SINE,Alu,-15,297,2,62537244,62537539 -1 - chr11 62606386 62606405 chr11,62606312,62606511,-,MIRb,SINE,MIR,-59,209,6,62606253,62606516 -5 - chr11 62771425 62771480 chr11,62771425,62771480,+,(CGC)n,Simple_repeat,Simple_repeat,1,56,0,62771425,62771480 -6 + chr11 62807794 62807981 chr11,62807794,62807981,+,MIR,SINE,MIR,51,262,0,62807744,62807981 -6 + chr11 62833999 62834043 chr11,62833999,62834209,-,MIR,SINE,MIR,-45,223,13,62833954,62834221 -5 - chr11 62852322 62852449 chr11,62852322,62852449,+,FLAM_C,SINE,Alu,3,128,-15,62852320,62852464 -6 + chr11 62855796 62855836 chr11,62855796,62855836,+,A-rich,Low_complexity,Low_complexity,1,40,0,62855796,62855836 -1 + chr11 62917926 62918057 chr11,62917810,62918057,-,MIR,SINE,MIR,-1,261,12,62917809,62918068 -2 - chr11 62918255 62918361 chr11,62918255,62918363,+,L2b,LINE,L2,3272,3384,-3,62914984,62918366 +5 + chr11 63616308 63616395 chr11,63615968,63616395,-,L1MA8,LINE,L1,0,6291,5856,63615968,63622250 -1 - chr11 63621607 63621671 chr11,63621607,63621911,+,AluSg,SINE,Alu,1,310,0,63621607,63621911 +5 + chr11 63650636 63650709 chr11,63650636,63650709,+,MLT1C,LTR,ERVL-MaLR,3,77,-390,63650634,63651099 +6 + chr11 63650710 63650747 chr11,63650710,63650767,+,MIRb,SINE,MIR,200,256,-12,63650511,63650779 +4 + chr11 64081806 64081856 chr11,64081806,64081856,-,MIR1_Amn,SINE,MIR,-59,171,123,64081747,64081978 -6 - chr11 64082953 64083070 chr11,64082953,64083154,-,MIRb,SINE,MIR,-8,260,73,64082945,64083226 -3 - chr11 64234312 64234352 chr11,64234312,64234358,+,(CGGCCC)n,Simple_repeat,Simple_repeat,1,47,0,64234312,64234358 -1 + chr11 64247953 64248019 chr11,64247886,64248019,+,L2a,LINE,L2,3246,3378,-48,64244641,64248067 +2 + chr11 64248056 64248140 chr11,64248056,64248140,+,L2a,LINE,L2,3351,3426,0,64244706,64248140 +6 + chr11 64248056 64248140 chr11,64248056,64248140,+,L2a,LINE,L2,3351,3426,0,64244706,64248140 -6 + chr11 64248505 64248589 chr11,64248505,64248589,-,MIRc,SINE,MIR,-142,126,35,64248363,64248623 +6 - chr11 64249384 64249428 chr11,64249297,64249428,+,MIRc,SINE,MIR,24,173,-57,64249274,64249485 -4 + chr11 64299418 64299484 chr11,64299418,64299484,+,(CCG)n,Simple_repeat,Simple_repeat,1,68,0,64299418,64299484 +6 + chr11 64304671 64304721 chr11,64304671,64304721,+,(GACCCA)n,Simple_repeat,Simple_repeat,1,54,0,64304671,64304721 +6 + chr11 64325050 64325215 chr11,64325017,64325215,-,LTR23,LTR,ERV1,0,437,231,64325017,64325445 +5 - chr11 64325219 64325331 chr11,64325219,64325336,+,AluJr,SINE,Alu,1,120,-192,64325219,64325528 -2 + chr11 64327484 64327536 chr11,64327441,64327804,-,MLT1J,LTR,ERVL-MaLR,-159,353,1,64327282,64327804 +3 - chr11 64329194 64329293 chr11,64329194,64329293,-,L2a,LINE,L2,-2,3424,3275,64329192,64332567 +6 - chr11 64329293 64329370 chr11,64329293,64329370,-,L2a,LINE,L2,-328,3098,3022,64328965,64332391 +6 - chr11 64394342 64394500 chr11,64394182,64394500,-,AluJr,SINE,Alu,-11,301,1,64394171,64394500 +5 - chr11 64394655 64394699 chr11,64394655,64394724,+,MLT1J,LTR,ERVL-MaLR,111,181,-331,64394545,64395055 -2 + chr11 64395314 64395573 chr11,64395314,64395573,-,AluSz,SINE,Alu,-58,254,1,64395256,64395573 +6 - chr11 64420427 64420553 chr11,64420427,64420553,+,L3,LINE,CR1,3563,3698,-401,64416865,64420954 +1 + chr11 64420579 64420622 chr11,64420579,64420920,-,MLT1I,LTR,ERVL-MaLR,0,411,86,64420579,64421005 -4 - chr11 64420732 64420920 chr11,64420579,64420920,-,MLT1I,LTR,ERVL-MaLR,0,411,86,64420579,64421005 -2 - chr11 64420953 64421008 chr11,64420953,64421008,+,L2b,LINE,L2,3327,3375,0,64417627,64421008 +6 + chr11 64428161 64428198 chr11,64428047,64428418,-,L1M4,LINE,L1,-2376,3770,3404,64425671,64431821 -3 - chr11 64432304 64432368 chr11,64432104,64432688,+,MLT1F,LTR,ERVL-MaLR,3,568,-23,64432102,64432711 +5 + chr11 64432460 64432670 chr11,64432104,64432688,+,MLT1F,LTR,ERVL-MaLR,3,568,-23,64432102,64432711 +5 + chr11 64449344 64449484 chr11,64449344,64449484,+,LTR78,LTR,ERV1,248,378,-926,64449097,64450410 +6 + chr11 64449594 64449652 chr11,64449594,64449733,+,LTR16A1,LTR,ERVL,89,243,-213,64449506,64449946 +4 + chr11 64450006 64450882 chr11,64450006,64450882,+,ERV3-16A3_I-int,LTR,ERVL,121,1047,-3949,64449886,64454831 +6 + chr11 64450882 64451181 chr11,64450882,64451181,-,AluSz6,SINE,Alu,-18,294,2,64450864,64451182 -6 - chr11 64451181 64451323 chr11,64451181,64451323,+,ERV3-16A3_I-int,LTR,ERVL,1048,1175,-4051,64450134,64455374 +6 + chr11 64451323 64451657 chr11,64451323,64451742,+,LTR47A2,LTR,ERVL,4,432,0,64451320,64451742 +5 + chr11 64500853 64500914 chr11,64500461,64500949,-,MER1A,DNA,hAT-Charlie,0,529,1,64500461,64500949 -1 - chr11 64502520 64502581 chr11,64502520,64502629,-,Charlie4z,DNA,hAT-Charlie,-29,138,27,64502491,64502655 -4 - chr11 64505071 64505386 chr11,64505003,64505433,+,MER70B,LTR,ERVL,1,445,-133,64505003,64505566 +5 + chr11 64646500 64646578 chr11,64646500,64646713,+,MIR3,SINE,MIR,14,268,0,64646487,64646713 +4 + chr11 64659563 64659681 chr11,64659563,64659751,+,MIRc,SINE,MIR,15,203,-65,64659549,64659816 +5 + chr11 64779243 64779264 chr11,64779243,64779264,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,64779243,64779264 +6 + chr11 64784914 64785404 chr11,64784827,64785404,+,L1ME1,LINE,L1,5599,6179,0,64779229,64785404 -5 + chr11 64785579 64785620 chr11,64785579,64785885,-,AluJo,SINE,Alu,-2,310,5,64785577,64785889 +1 - chr11 64889663 64889970 chr11,64889663,64889970,+,AluJb,SINE,Alu,5,309,-3,64889659,64889973 -6 + chr11 64890005 64890348 chr11,64890005,64890348,+,AluSx,SINE,Alu,1,311,-1,64890005,64890349 -6 + chr11 64890727 64890973 chr11,64890727,64890973,-,L2c,LINE,L2,-105,3270,3031,64890622,64894003 +6 - chr11 64892025 64892319 chr11,64892025,64892319,+,AluJb,SINE,Alu,1,296,-16,64892025,64892335 -6 + chr11 64892521 64892602 chr11,64892521,64892602,+,MIRc,SINE,MIR,83,168,-100,64892439,64892702 -6 + chr11 65118310 65118464 chr11,65118157,65118464,+,AluSx1,SINE,Alu,1,299,-13,65118157,65118477 +1 + chr11 65118540 65118662 chr11,65118540,65118662,-,L2a,LINE,L2,-6,3420,3297,65118534,65121958 -6 - chr11 65118706 65118970 chr11,65118706,65118970,+,L2,LINE,L2,2674,2962,-457,65116033,65119427 +6 + chr11 65119061 65119111 chr11,65119061,65119352,+,AluJo,SINE,Alu,1,299,-13,65119061,65119365 +5 + chr11 65177606 65177734 chr11,65177471,65177785,-,AluSx1,SINE,Alu,-13,299,1,65177458,65177785 +5 - chr11 65180021 65180093 chr11,65179866,65180093,-,L1M4,LINE,L1,-863,5316,5087,65179003,65185179 +5 - chr11 65180093 65180394 chr11,65180093,65180394,+,AluJr4,SINE,Alu,1,300,-12,65180093,65180406 -6 + chr11 65180394 65180508 chr11,65180394,65180508,-,L1M4,LINE,L1,-1060,5086,4970,65179334,65185477 +6 - chr11 65180592 65180717 chr11,65180592,65180717,+,MIR3,SINE,MIR,41,160,-48,65180552,65180765 -6 + chr11 65181225 65181242 chr11,65181116,65181242,-,MIR3,SINE,MIR,-3,205,78,65181113,65181319 +4 - chr11 65367438 65367667 chr11,65367362,65367667,-,AluY,SINE,Alu,-11,300,1,65367351,65367667 -1 - chr11 65367927 65368043 chr11,65367878,65368059,-,AluJb,SINE,Alu,-9,303,134,65367869,65368192 -3 - chr11 65375231 65375299 chr11,65375193,65375675,-,L2b,LINE,L2,-6,3381,2824,65375187,65378498 -5 - chr11 65423132 65423178 chr11,65423132,65423178,+,GA-rich,Low_complexity,Low_complexity,1,47,0,65423132,65423178 +6 + chr11 65425195 65425219 chr11,65425195,65425219,+,(CAAA)n,Simple_repeat,Simple_repeat,1,24,0,65425195,65425219 +6 + chr11 65428531 65428593 chr11,65428531,65428593,+,MamRep4096,DNA,hAT-Tip100,68,134,-292,65428464,65428885 +6 + chr11 65428987 65429477 chr11,65428987,65429477,-,L1ME4a,LINE,L1,-251,5873,5367,65428736,65434843 -6 - chr11 65429477 65429519 chr11,65429477,65429519,+,(TG)n,Simple_repeat,Simple_repeat,1,43,0,65429477,65429519 +6 + chr11 65429519 65429591 chr11,65429519,65429591,-,L1ME4a,LINE,L1,-758,5366,5254,65428761,65434844 -6 - chr11 65429592 65429862 chr11,65429592,65429862,-,L1ME4a,LINE,L1,-891,5255,4959,65428701,65434820 -6 - chr11 65430027 65430148 chr11,65430027,65430148,+,MIRb,SINE,MIR,31,156,-112,65429997,65430260 +6 + chr11 65430444 65430516 chr11,65430444,65430516,+,Charlie4z,DNA,hAT-Charlie,4,66,-101,65430441,65430617 +6 + chr11 65430560 65430886 chr11,65430560,65430886,-,L1M5,LINE,L1,-293,5831,5454,65430267,65436339 -6 - chr11 65430888 65432241 chr11,65430888,65432241,-,L1MB2,LINE,L1,-9,6162,4981,65430879,65437221 -6 - chr11 65432668 65432685 chr11,65432668,65432685,+,(TG)n,Simple_repeat,Simple_repeat,1,17,0,65432668,65432685 +6 + chr11 65432693 65433229 chr11,65432693,65433229,-,L1PB3,LINE,L1,0,6154,5613,65432693,65438841 -6 - chr11 65433716 65433735 chr11,65433716,65433735,+,(TG)n,Simple_repeat,Simple_repeat,1,19,0,65433716,65433735 +6 + chr11 65433746 65433848 chr11,65433746,65433848,-,L1PB3,LINE,L1,-3,6151,6050,65433743,65439897 -6 - chr11 65433870 65434194 chr11,65433870,65434194,-,L1ME3F,LINE,L1,-178,6065,5733,65433692,65439926 -6 - chr11 65434227 65434843 chr11,65434227,65434843,-,L1ME3G,LINE,L1,-20,904,206,65434207,65435048 -6 - chr11 65436611 65437060 chr11,65436611,65437060,-,L1ME4b,LINE,L1,-364,528,159,65436247,65437218 -6 - chr11 65437183 65437251 chr11,65437183,65437251,+,(TA)n,Simple_repeat,Simple_repeat,1,68,0,65437183,65437251 +6 + chr11 65437458 65437592 chr11,65437458,65437592,-,L1M4,LINE,L1,-1335,4811,4669,65436123,65442260 -6 - chr11 65438390 65439384 chr11,65438390,65439384,-,L1MB7,LINE,L1,-41,6143,5153,65438349,65444536 -6 - chr11 65439400 65439684 chr11,65439400,65439684,+,AluSz6,SINE,Alu,1,295,-17,65439400,65439701 +6 + chr11 65439978 65440104 chr11,65439978,65440104,+,FLAM_C,SINE,Alu,5,130,-13,65439974,65440117 +6 + chr11 65440124 65440202 chr11,65440124,65440202,-,L1MB7,LINE,L1,-2202,3944,3867,65437922,65444068 -6 - chr11 65440323 65440484 chr11,65440323,65440484,+,AluJo,SINE,Alu,137,306,-6,65440187,65440490 +6 + chr11 65440600 65440864 chr11,65440600,65440864,+,AluSx3,SINE,Alu,39,303,-8,65440562,65440872 +6 + chr11 65440951 65441153 chr11,65440951,65441153,+,MIR,SINE,MIR,1,201,-67,65440951,65441220 +6 + chr11 65441331 65441464 chr11,65441331,65441464,-,AluJo,SINE,Alu,-181,131,1,65441150,65441464 -6 - chr11 65441504 65441864 chr11,65441504,65441864,-,L1MB7,LINE,L1,-2759,3387,3030,65438745,65444893 -6 - chr11 65442120 65442142 chr11,65442120,65442142,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,65442120,65442142 +6 + chr11 65442603 65442894 chr11,65442603,65442894,+,AluSx4,SINE,Alu,4,295,-15,65442600,65442909 +6 + chr11 65444263 65444322 chr11,65444263,65444322,+,(TG)n,Simple_repeat,Simple_repeat,1,59,0,65444263,65444322 +6 + chr11 65444390 65444497 chr11,65444390,65444497,+,MIR1_Amn,SINE,MIR,66,171,-59,65444325,65444556 +6 + chr11 65445012 65445107 chr11,65445012,65445107,-,HAL1ME,LINE,L1,-11,2454,2344,65445001,65447450 -6 - chr11 65445385 65445433 chr11,65445385,65445433,+,G-rich,Low_complexity,Low_complexity,1,48,0,65445385,65445433 +6 + chr11 65455694 65455768 chr11,65455594,65455768,+,Charlie8,DNA,hAT-Charlie,1,152,-2276,65455594,65458044 +2 + chr11 65455768 65456087 chr11,65455768,65456087,+,AluY,SINE,Alu,1,300,-11,65455768,65456098 +6 + chr11 65456087 65456318 chr11,65456087,65456979,+,Charlie8,DNA,hAT-Charlie,153,1066,-1362,65455935,65458341 +5 + chr11 65466628 65466710 chr11,65466628,65466710,+,AluSx,SINE,Alu,2,82,-230,65466627,65466940 +6 + chr11 65466710 65466720 chr11,65466710,65467009,+,AluSp,SINE,Alu,1,299,-14,65466710,65467023 +5 + chr11 65487241 65487382 chr11,65487240,65487382,-,MIRc,SINE,MIR,-22,246,90,65487218,65487471 +5 - chr11 65499661 65499925 chr11,65499661,65499925,+,L1M4c,LINE,L1,949,1207,-5177,65498713,65505102 +5 + chr11 65500554 65500579 chr11,65500554,65500579,+,(GAAG)n,Simple_repeat,Simple_repeat,1,26,0,65500554,65500579 +6 + chr11 65502502 65502545 chr11,65502502,65502545,+,A-rich,Low_complexity,Low_complexity,1,43,0,65502502,65502545 +6 + chr11 65561531 65561607 chr11,65561531,65561734,-,AluJb,SINE,Alu,-7,305,121,65561524,65561854 -5 - chr11 65568482 65568750 chr11,65568468,65568750,-,AluSx1,SINE,Alu,-18,294,12,65568450,65568761 +5 - chr11 65568750 65568880 chr11,65568750,65568880,-,L2,LINE,L2,-567,2852,2729,65568183,65571608 +6 - chr11 65569074 65569205 chr11,65569074,65569205,+,AluJb,SINE,Alu,1,131,-181,65569074,65569386 -6 + chr11 65569206 65569231 chr11,65569206,65569231,+,(CAAA)n,Simple_repeat,Simple_repeat,1,26,0,65569206,65569231 -6 + chr11 65745729 65745798 chr11,65745474,65746096,-,L1MC4a,LINE,L1,-94,7788,7122,65745380,65753217 -1 - chr11 65771192 65771243 chr11,65771064,65771243,-,L1MC4,LINE,L1,-6023,192,3,65765041,65771245 -2 - chr11 65771399 65771585 chr11,65771399,65771659,+,ERVL-B4-int,LTR,ERVL,5000,5296,-418,65766400,65772077 +5 + chr11 66067277 66067405 chr11,66067179,66067405,-,L2a,LINE,L2,-397,3022,2769,66066782,66070173 +5 - chr11 66259567 66259842 chr11,66259139,66260025,-,L2c,LINE,L2,0,3387,2374,66259139,66262398 +5 - chr11 66264777 66264862 chr11,66264654,66264866,+,L2b,LINE,L2,3060,3306,-69,66261595,66264935 -5 + chr11 66265352 66265418 chr11,66265321,66265418,+,L2b,LINE,L2,3097,3195,-180,66262225,66265598 -4 + chr11 66268055 66268129 chr11,66268043,66268167,+,MIRb,SINE,MIR,27,159,-109,66268017,66268276 -1 + chr11 66269832 66269847 chr11,66269644,66269847,+,MIRb,SINE,MIR,34,248,-20,66269611,66269867 -5 + chr11 66269867 66270174 chr11,66269867,66270174,-,AluJo,SINE,Alu,-5,307,1,66269862,66270174 +6 - chr11 66270233 66270279 chr11,66270233,66270279,+,(TTG)n,Simple_repeat,Simple_repeat,1,46,0,66270233,66270279 -6 + chr11 66270298 66270599 chr11,66270298,66270599,+,AluSc5,SINE,Alu,2,302,-7,66270297,66270606 -6 + chr11 66270599 66270713 chr11,66270599,66270713,-,FLAM_A,SINE,Alu,-31,111,1,66270568,66270713 +6 - chr11 66271063 66271205 chr11,66271063,66271205,+,AluJb,SINE,Alu,1,142,-170,66271063,66271375 -6 + chr11 66271205 66271514 chr11,66271205,66271514,+,AluSq2,SINE,Alu,1,309,-4,66271205,66271518 -6 + chr11 66271514 66271691 chr11,66271514,66271691,+,AluJb,SINE,Alu,143,303,-9,66271372,66271700 -6 + chr11 66318834 66319237 chr11,66318766,66319408,+,L2a,LINE,L2,2526,3274,-152,66316241,66319560 +5 + chr11 66339783 66339875 chr11,66339633,66339901,-,AluJb,SINE,Alu,-49,263,1,66339584,66339901 -5 - chr11 66349344 66349397 chr11,66349344,66349397,-,L2b,LINE,L2,-15,3360,3308,66349329,66352704 -6 - chr11 66351197 66351374 chr11,66350959,66351598,-,L1MB4,LINE,L1,-1829,4918,4446,66349130,66356043 -3 - chr11 66353460 66353612 chr11,66353460,66353612,+,AluYc,SINE,Alu,133,284,-15,66353328,66353627 +6 + chr11 66358225 66358322 chr11,66358185,66358490,-,AluJr,SINE,Alu,-18,294,3,66358167,66358492 -3 - chr11 66363623 66363760 chr11,66363623,66363767,+,MIR3,SINE,MIR,55,208,0,66363569,66363767 +5 + chr11 66364525 66364804 chr11,66364503,66364806,-,AluSx1,SINE,Alu,-12,300,1,66364491,66364806 -5 - chr11 66409326 66409360 chr11,66409326,66409360,+,(CCTCGC)n,Simple_repeat,Simple_repeat,1,36,0,66409326,66409360 +6 + chr11 66473523 66473627 chr11,66473523,66473627,-,MIRc,SINE,MIR,-77,191,71,66473446,66473697 +6 - chr11 66474490 66474637 chr11,66474490,66474637,+,Charlie16a,DNA,hAT-Charlie,3,154,-188,66474488,66474825 -6 + chr11 66474656 66474719 chr11,66474656,66474719,-,MIR,SINE,MIR,-6,256,195,66474650,66474913 +6 - chr11 66474930 66475030 chr11,66474719,66475030,-,AluSx,SINE,Alu,-2,310,1,66474717,66475030 +1 - chr11 66475030 66475104 chr11,66475030,66475208,-,MIR,SINE,MIR,-68,194,17,66474962,66475224 +2 - chr11 66477346 66477500 chr11,66477302,66477500,-,MIRb,SINE,MIR,-1,267,40,66477301,66477539 +5 - chr11 66535898 66536126 chr11,66535896,66536126,+,L1ME3D,LINE,L1,5762,6021,-221,66530135,66536347 -5 + chr11 66536276 66536569 chr11,66536276,66536569,+,AluSx1,SINE,Alu,3,310,-2,66536274,66536571 -6 + chr11 66536589 66536904 chr11,66536589,66536904,+,AluSp,SINE,Alu,1,313,0,66536589,66536904 -6 + chr11 66537148 66537478 chr11,66537148,66537478,-,HAL1,LINE,L1,-1942,565,235,66535206,66537712 +6 - chr11 66537553 66537645 chr11,66537553,66537645,+,AluY,SINE,Alu,1,92,-219,66537553,66537864 -6 + chr11 66537646 66537926 chr11,66537646,66537926,+,AluY,SINE,Alu,1,281,-30,66537646,66537956 -6 + chr11 66537926 66537936 chr11,66537926,66537962,+,(AAATA)n,Simple_repeat,Simple_repeat,1,36,0,66537926,66537962 -1 + chr11 66666910 66667063 chr11,66666910,66667063,-,FRAM,SINE,Alu,-13,163,1,66666897,66667063 -6 - chr11 66667698 66667996 chr11,66667698,66667996,-,AluJo,SINE,Alu,-15,297,9,66667683,66668004 -1 - chr11 66668120 66668302 chr11,66668120,66668302,+,MIRb,SINE,MIR,17,209,-59,66668104,66668361 +6 + chr11 67354321 67354348 chr11,67354321,67354432,-,MIR,SINE,MIR,0,262,152,67354321,67354583 -5 - chr11 67435057 67435100 chr11,67435051,67435100,+,(GCCACC)n,Simple_repeat,Simple_repeat,1,49,0,67435051,67435100 -4 + chr11 67602880 67603353 chr11,67602805,67603353,-,LTR26,LTR,ERV1,0,603,32,67602805,67603384 +5 - chr11 67603353 67604313 chr11,67603353,67604313,-,LTR5_Hs,LTR,ERVK,0,968,1,67603353,67604313 +5 - chr11 67604313 67604346 chr11,67604313,67604346,-,LTR26,LTR,ERV1,-572,31,4,67603741,67604349 +6 - chr11 67604349 67604842 chr11,67604349,67604842,-,L2c,LINE,L2,-222,3165,2544,67604127,67607385 +6 - chr11 67605020 67605106 chr11,67605020,67605195,+,MIRb,SINE,MIR,34,233,-35,67604987,67605230 -2 + chr11 67605625 67605792 chr11,67605625,67605829,+,MIRc,SINE,MIR,9,230,-38,67605617,67605867 +4 + chr11 67606675 67606706 chr11,67606675,67606712,+,(GAGC)n,Simple_repeat,Simple_repeat,1,37,0,67606675,67606712 -1 + chr11 67618279 67618394 chr11,67617196,67618394,-,L1MA7,LINE,L1,0,6291,5017,67617196,67623410 +5 - chr11 67618394 67618697 chr11,67618394,67618697,-,AluSx3,SINE,Alu,-5,306,2,67618389,67618698 +6 - chr11 67618697 67618749 chr11,67618697,67618749,-,L1MA7,LINE,L1,-1127,5016,4964,67617570,67623712 +6 - chr11 67886477 67886689 chr11,67885784,67888955,-,HERVS71-int,LTR,ERV1,-5742,3236,5,67880042,67888959 -1 - chr11 67888153 67888955 chr11,67885784,67888955,-,HERVS71-int,LTR,ERV1,-5742,3236,5,67880042,67888959 -1 - chr11 67888958 67889515 chr11,67888958,67889515,-,LTR6B,LTR,ERV1,0,558,1,67888958,67889515 -6 - chr11 67889522 67889645 chr11,67889522,67889645,-,L3,LINE,CR1,-200,3899,3767,67889322,67893411 -6 - chr11 67889662 67889702 chr11,67889662,67889702,+,(TCCT)n,Simple_repeat,Simple_repeat,1,43,0,67889662,67889702 +6 + chr11 67889712 67889825 chr11,67889712,67889825,-,MER58A,DNA,hAT-Charlie,-3,221,116,67889709,67889940 -6 - chr11 67889825 67890215 chr11,67889825,67890215,+,MSTA,LTR,ERVL-MaLR,1,428,0,67889825,67890215 +6 + chr11 67890215 67890332 chr11,67890215,67890332,-,MER58A,DNA,hAT-Charlie,-109,115,1,67890106,67890332 -6 - chr11 67890351 67890574 chr11,67890351,67890574,-,AluSx1,SINE,Alu,-89,223,2,67890262,67890575 -6 - chr11 67890574 67890710 chr11,67890574,67890710,-,AluSz,SINE,Alu,-176,136,1,67890398,67890710 -6 - chr11 67893879 67893994 chr11,67893844,67893994,+,L2b,LINE,L2,3277,3426,0,67890568,67893994 +2 + chr11 67934581 67934699 chr11,67934581,67934699,+,L1M7,LINE,L1,1538,1661,-4582,67933044,67939281 -6 + chr11 67939683 67939774 chr11,67939625,67939776,-,MIRc,SINE,MIR,-3,265,110,67939622,67939885 +1 - chr11 68024809 68025033 chr11,68024754,68025033,-,L1MD3,LINE,L1,-755,7127,6776,68023999,68031808 +5 - chr11 68029284 68029352 chr11,68029156,68029352,+,LOR1a,LTR,ERV1,309,497,0,68028848,68029352 -4 + chr11 68030259 68030333 chr11,68030157,68030333,+,MIR,SINE,MIR,8,192,-70,68030150,68030403 -4 + chr11 68129800 68129912 chr11,68129800,68129912,+,MLT1J1,LTR,ERVL-MaLR,3,110,-334,68129798,68130246 +6 + chr11 68129944 68130082 chr11,68129944,68130098,+,MLT1J1,LTR,ERVL-MaLR,200,376,-72,68129745,68130170 +4 + chr11 68130179 68130370 chr11,68130168,68130370,+,MLT1J2,LTR,ERVL-MaLR,239,448,0,68129930,68130370 +2 + chr11 68130393 68130518 chr11,68130393,68130546,+,LTR38-int,LTR,ERV1,1415,1584,-5055,68128979,68135601 +5 + chr11 68615926 68616019 chr11,68615926,68616060,+,MIR,SINE,MIR,21,174,-88,68615906,68616148 -2 + chr11 68616296 68616424 chr11,68616296,68616424,+,L1ME2z,LINE,L1,4924,5051,-1095,68611373,68617519 -6 + chr11 68616479 68616697 chr11,68616479,68616697,+,L1ME2z,LINE,L1,5125,5359,-784,68611355,68617481 -6 + chr11 68870664 68870706 chr11,68870460,68870706,+,HERV3-int,LTR,ERV1,2230,2476,-5950,68868231,68876656 +1 + chr11 68870698 68870819 chr11,68870698,68870819,+,HERV3-int,LTR,ERV1,3701,3824,-4602,68866998,68875421 +6 + chr11 68870795 68870915 chr11,68870795,68873979,+,HERV3-int,LTR,ERV1,5136,8426,0,68865660,68873979 +4 + chr11 68871543 68873979 chr11,68870795,68873979,+,HERV3-int,LTR,ERV1,5136,8426,0,68865660,68873979 +2 + chr11 68873981 68874542 chr11,68873981,68874582,+,LTR61,LTR,ERV1,1,559,0,68873981,68874582 +5 + chr11 68941503 68941621 chr11,68941409,68941621,+,MLT1K,LTR,ERVL-MaLR,374,591,-4,68941036,68941625 -5 + chr11 68941841 68941987 chr11,68941841,68942014,+,MIRb,SINE,MIR,36,205,-63,68941806,68942077 -2 + chr11 69000765 69000816 chr11,69000665,69000816,+,L1ME2,LINE,L1,6012,6157,-7,68994654,69000823 -5 + chr11 69000879 69001213 chr11,69000879,69001213,-,Tigger11a,DNA,TcMar-Tigger,-258,477,141,69000621,69001353 +6 - chr11 69002012 69002048 chr11,69002012,69002102,-,MIR,SINE,MIR,-85,177,67,69001927,69002168 +1 - chr11 69013292 69013325 chr11,69013292,69013325,+,(GGAGGG)n,Simple_repeat,Simple_repeat,1,33,0,69013292,69013325 +6 + chr11 69013986 69014020 chr11,69013986,69014020,+,G-rich,Low_complexity,Low_complexity,1,34,0,69013986,69014020 +6 + chr11 69017636 69017656 chr11,69017216,69017656,+,MLT1D,LTR,ERVL-MaLR,4,505,0,69017213,69017656 +2 + chr11 69017656 69017916 chr11,69017656,69017916,-,L2b,LINE,L2,-190,3185,2927,69017466,69020842 -6 - chr11 69018387 69018447 chr11,69018387,69018455,-,L1MC5,LINE,L1,-256,9048,8981,69018131,69027435 -5 - chr11 69103713 69103872 chr11,69103713,69104138,-,MLT1C,LTR,ERVL-MaLR,0,467,8,69103713,69104145 -4 - chr11 69108853 69109024 chr11,69108805,69109024,+,L2c,LINE,L2,3096,3344,-43,69105710,69109067 +2 + chr11 69109042 69109078 chr11,69109042,69109078,+,(TATTAG)n,Simple_repeat,Simple_repeat,1,36,0,69109042,69109078 +6 + chr11 69147228 69147412 chr11,69147151,69147412,-,Kanga11a,DNA,TcMar-Tc2,-695,275,1,69146456,69147412 +5 - chr11 69147582 69147740 chr11,69147582,69147746,-,MLT1I,LTR,ERVL-MaLR,-3,408,229,69147579,69147974 +2 - chr11 69171199 69171397 chr11,69171126,69171397,-,L4_B_Mam,LINE,RTE-X,-207,4931,4581,69170919,69175977 +4 - chr11 69171403 69171564 chr11,69171403,69171834,-,MLT2C2,LTR,ERVL,0,464,27,69171403,69171860 +1 - chr11 69371463 69371530 chr11,69371434,69371530,+,L2c,LINE,L2,3050,3157,-230,69368385,69371760 +1 + chr11 69372226 69372257 chr11,69372199,69372257,+,MIRc,SINE,MIR,117,175,-93,69372083,69372350 +2 + chr11 69372433 69372511 chr11,69372433,69372651,+,MER58A,DNA,hAT-Charlie,1,224,0,69372433,69372651 +5 + chr11 69414307 69414362 chr11,69413987,69414362,+,THE1B,LTR,ERVL-MaLR,1,364,0,69413987,69414362 +1 + chr11 69414467 69414702 chr11,69414467,69414702,+,MIR,SINE,MIR,20,251,-11,69414448,69414713 +6 + chr11 69414952 69414974 chr11,69414952,69414974,+,(CAGC)n,Simple_repeat,Simple_repeat,1,23,0,69414952,69414974 +6 + chr11 69415368 69415407 chr11,69415368,69415407,+,(TGAA)n,Simple_repeat,Simple_repeat,1,39,0,69415368,69415407 +6 + chr11 69425690 69425806 chr11,69425637,69426207,+,L1MC2,LINE,L1,5797,6344,0,69419841,69426207 +1 + chr11 69427831 69428264 chr11,69427831,69428264,+,MLT1B,LTR,ERVL-MaLR,1,390,0,69427831,69428264 +6 + chr11 69428388 69428528 chr11,69428388,69428528,+,MIR,SINE,MIR,33,196,-66,69428356,69428594 +6 + chr11 69428547 69428684 chr11,69428547,69428684,-,MIRb,SINE,MIR,-35,233,84,69428512,69428767 -6 - chr11 69428957 69429021 chr11,69428957,69429021,-,L2c,LINE,L2,-58,3329,3267,69428899,69432287 -6 - chr11 69429021 69429063 chr11,69429021,69429063,+,(TCAC)n,Simple_repeat,Simple_repeat,1,42,0,69429021,69429063 +6 + chr11 69429123 69429621 chr11,69429123,69429663,+,MLT1E,LTR,ERVL-MaLR,2,652,-1,69429122,69429664 +5 + chr11 69438365 69438401 chr11,69438274,69438401,-,MIRb,SINE,MIR,-71,197,63,69438203,69438463 +5 - chr11 69469198 69469213 chr11,69469157,69469213,-,MER5A,DNA,hAT-Charlie,-56,133,77,69469101,69469289 -2 - chr11 69479696 69479839 chr11,69479627,69479839,+,L2c,LINE,L2,2936,3151,-236,69476692,69480075 -4 + chr11 69909203 69909285 chr11,69909203,69909285,-,MIRb,SINE,MIR,0,268,176,69909203,69909460 +6 - chr11 69909379 69909481 chr11,69909379,69909481,-,MIR1_Amn,SINE,MIR,-59,171,65,69909320,69909545 +6 - chr11 70014858 70014910 chr11,70014857,70014910,-,FRAM,SINE,Alu,-20,146,98,70014837,70015007 +5 - chr11 70014914 70015050 chr11,70014914,70015050,-,L2b,LINE,L2,-614,2805,2655,70014300,70017704 +6 - chr11 70018232 70018355 chr11,70018072,70018376,+,AluJr,SINE,Alu,1,302,-10,70018072,70018386 -3 + chr11 70056230 70056535 chr11,70054660,70057434,-,L1ME3A,LINE,L1,-2898,3248,450,70051762,70057883 +5 - chr11 70063834 70063920 chr11,70063834,70063920,+,(TCTT)n,Simple_repeat,Simple_repeat,1,91,0,70063834,70063920 -6 + chr11 70064607 70064659 chr11,70064607,70064659,+,(TTCCCTC)n,Simple_repeat,Simple_repeat,1,54,0,70064607,70064659 -6 + chr11 70074936 70075062 chr11,70074886,70075062,-,MIR,SINE,MIR,-5,263,56,70074881,70075117 +4 - chr11 70075362 70075433 chr11,70075362,70075467,+,U6,snRNA,snRNA,1,105,-2,70075362,70075469 -1 + chr11 70129297 70129483 chr11,70129275,70129483,-,MIR,SINE,MIR,-33,229,10,70129242,70129492 -1 - chr11 70129628 70129718 chr11,70129628,70129920,-,AluSz,SINE,Alu,-17,295,1,70129611,70129920 -4 - chr11 70149549 70149623 chr11,70149368,70149665,+,AluSq2,SINE,Alu,1,298,-15,70149368,70149680 +5 + chr11 70206857 70206920 chr11,70206857,70206920,-,MIR,SINE,MIR,-187,75,10,70206670,70206929 +6 - chr11 70207128 70207207 chr11,70207128,70207207,+,MIRb,SINE,MIR,170,253,-15,70206959,70207222 -6 + chr11 70282367 70282412 chr11,70282343,70282462,-,FLAM_A,SINE,Alu,-23,119,1,70282320,70282462 +5 - chr11 70320128 70320198 chr11,70320128,70320436,+,L1MEi,LINE,L1,6,314,-1898,70320123,70322334 +4 + chr11 70321265 70321345 chr11,70321001,70321345,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,70321001,70321345 +2 + chr11 70321345 70321415 chr11,70321345,70321754,+,L1MEi,LINE,L1,556,1023,-1189,70320790,70322943 +5 + chr11 70358235 70358249 chr11,70358235,70358522,-,AluSz,SINE,Alu,-28,284,1,70358207,70358522 +2 - chr11 70358336 70358522 chr11,70358235,70358522,-,AluSz,SINE,Alu,-28,284,1,70358207,70358522 +4 - chr11 70362876 70362925 chr11,70362806,70362925,-,AluJo,SINE,Alu,-194,118,2,70362612,70362926 +4 - chr11 70363100 70363368 chr11,70363100,70363424,-,L1ME3A,LINE,L1,-3,6170,5835,70363097,70369258 +1 - chr11 70373410 70373528 chr11,70373211,70373528,-,AluJo,SINE,Alu,-3,309,1,70373208,70373528 +5 - chr11 70373654 70373769 chr11,70373654,70373769,-,MIR,SINE,MIR,-30,232,118,70373624,70373886 +6 - chr11 70374091 70374389 chr11,70374091,70374389,+,AluJo,SINE,Alu,1,305,-7,70374091,70374396 -6 + chr11 70375181 70375202 chr11,70375181,70375202,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,70375181,70375202 -6 + chr11 70375216 70375240 chr11,70375216,70375240,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,70375216,70375240 -6 + chr11 70375506 70375620 chr11,70375506,70375818,+,AluJb,SINE,Alu,2,310,-2,70375505,70375820 -2 + chr11 70398098 70398136 chr11,70397653,70398136,+,L2c,LINE,L2,2821,3316,-71,70394833,70398207 -4 + chr11 70398461 70398488 chr11,70398461,70398493,+,G-rich,Low_complexity,Low_complexity,1,32,0,70398461,70398493 -1 + chr11 70603565 70603633 chr11,70603565,70603633,-,MIR,SINE,MIR,-135,127,59,70603430,70603691 -6 - chr11 70604655 70604695 chr11,70604655,70604695,+,(ATAC)n,Simple_repeat,Simple_repeat,1,42,0,70604655,70604695 +6 + chr11 70604722 70604835 chr11,70604722,70604835,-,MIR,SINE,MIR,-51,211,103,70604671,70604937 -6 - chr11 70633534 70634295 chr11,70633411,70634295,+,L1MC5a,LINE,L1,1689,2609,-168,70631723,70634463 +2 + chr11 70634337 70634578 chr11,70634337,70634578,+,L1MB3,LINE,L1,5080,5330,-816,70629258,70635394 +6 + chr11 70634578 70634879 chr11,70634578,70634879,+,AluSz,SINE,Alu,1,301,-11,70634578,70634890 +6 + chr11 70634879 70635490 chr11,70634879,70635735,+,L1MB3,LINE,L1,5331,6181,-2,70629549,70635737 +5 + chr11 70647455 70647562 chr11,70647455,70647628,+,MIR,SINE,MIR,60,244,-18,70647396,70647646 +5 + chr11 70705796 70706068 chr11,70705796,70706280,+,L2a,LINE,L2,2675,3117,-309,70703122,70706589 -1 + chr11 70862790 70862867 chr11,70862644,70862882,-,L2,LINE,L2,-798,2621,2336,70861846,70865217 -1 - chr11 70863788 70864004 chr11,70863709,70864004,+,MLT1B,LTR,ERVL-MaLR,73,389,-1,70863637,70864005 +2 + chr11 70864452 70864536 chr11,70864452,70864536,-,MIR3,SINE,MIR,-52,156,71,70864400,70864606 -6 - chr11 70864585 70864764 chr11,70864585,70864764,+,MLT1A0,LTR,ERVL-MaLR,5,222,-143,70864581,70864907 +6 + chr11 70864764 70865032 chr11,70864764,70865032,+,AluJr,SINE,Alu,22,291,-21,70864743,70865053 +6 + chr11 70865032 70865115 chr11,70865032,70865164,+,MLT1A0,LTR,ERVL-MaLR,223,363,-2,70864810,70865166 +5 + chr11 71448789 71448885 chr11,71448789,71448904,-,L2a,LINE,L2,-53,3373,3250,71448736,71452153 -4 - chr11 71451690 71452157 chr11,71451264,71452186,+,MER49,LTR,ERV1,3,923,0,71451262,71452186 +5 + chr11 71701369 71701485 chr11,71701369,71701519,-,L2b,LINE,L2,0,3426,3277,71701369,71704795 +2 - chr11 71705360 71705404 chr11,71705278,71705675,-,MSTA,LTR,ERVL-MaLR,0,428,1,71705278,71705675 +1 - chr11 71794401 71794599 chr11,71794401,71794599,-,L1MD2,LINE,L1,-351,6008,5802,71794050,71800400 +6 - chr11 71810317 71810393 chr11,71810317,71810393,+,(ATT)n,Simple_repeat,Simple_repeat,1,78,0,71810317,71810393 -6 + chr11 71810941 71810977 chr11,71810941,71810977,+,(TTTA)n,Simple_repeat,Simple_repeat,1,36,0,71810941,71810977 -6 + chr11 71810980 71811276 chr11,71810980,71811276,-,AluSg,SINE,Alu,-14,296,1,71810966,71811276 +6 - chr11 72017359 72017465 chr11,72017263,72017465,-,MIR,SINE,MIR,0,262,53,72017263,72017517 -2 - chr11 72020326 72020344 chr11,72020054,72020344,+,L2,LINE,L2,2092,2440,-979,72017963,72021323 +2 + chr11 72020590 72020898 chr11,72020590,72020898,+,AluSx,SINE,Alu,1,309,-3,72020590,72020901 +6 + chr11 72163322 72163379 chr11,72163172,72163994,-,MER61-int,LTR,ERV1,0,5217,4360,72163172,72168353 +5 - chr11 72198513 72198590 chr11,72198270,72198590,-,AluJo,SINE,Alu,-4,308,1,72198266,72198590 +4 - chr11 72198687 72198736 chr11,72198687,72198898,-,MLT1I,LTR,ERVL-MaLR,-123,321,33,72198564,72198930 +2 - chr11 72209047 72209123 chr11,72208280,72209123,+,L1MB2,LINE,L1,703,1549,-5104,72207578,72214227 -4 + chr11 72209123 72209241 chr11,72209123,72209502,+,THE1D,LTR,ERVL-MaLR,1,381,0,72209123,72209502 -1 + chr11 72302653 72302821 chr11,72302653,72302821,-,L2b,LINE,L2,0,3375,3181,72302653,72306001 -6 - chr11 72351347 72351360 chr11,72351295,72351360,+,L2c,LINE,L2,3270,3336,-51,72348026,72351411 +1 + chr11 72351397 72351467 chr11,72351397,72351561,+,MER5C,DNA,hAT-Charlie,13,187,-126,72351385,72351687 +4 + chr11 72352772 72352825 chr11,72352384,72352825,+,L2c,LINE,L2,2936,3375,0,72349449,72352825 +2 + chr11 72352820 72352934 chr11,72352820,72352934,-,MIR3,SINE,MIR,-15,193,78,72352805,72353011 -6 - chr11 72354582 72354617 chr11,72354582,72354617,+,(CTCC)n,Simple_repeat,Simple_repeat,1,36,0,72354582,72354617 +6 + chr11 72363541 72363555 chr11,72363541,72363801,-,MIRc,SINE,MIR,-3,265,2,72363538,72363802 -5 - chr11 72571929 72571981 chr11,72571929,72571981,+,(TG)n,Simple_repeat,Simple_repeat,1,52,0,72571929,72571981 +6 + chr11 72572006 72572039 chr11,72572006,72572039,-,MER4E,LTR,ERV1,0,766,744,72572006,72572782 -6 - chr11 72572039 72572337 chr11,72572039,72572337,-,AluSx1,SINE,Alu,-17,295,1,72572022,72572337 -6 - chr11 72572337 72573077 chr11,72572337,72573077,-,MER4E,LTR,ERV1,-23,743,1,72572314,72573077 -6 - chr11 72573077 72573229 chr11,72573077,72573398,+,Tigger4b,DNA,TcMar-Tigger,11,361,0,72573067,72573398 +5 + chr11 72643338 72643472 chr11,72643338,72643472,+,MIR3,SINE,MIR,6,135,-73,72643333,72643545 +6 + chr11 72649250 72649312 chr11,72649219,72649312,+,L2a,LINE,L2,3338,3426,0,72645882,72649312 +2 + chr11 72658069 72658109 chr11,72658016,72658109,-,MIRb,SINE,MIR,-36,232,137,72657980,72658245 -2 - chr11 72659359 72659384 chr11,72659263,72659384,-,L3b,LINE,CR1,-168,5064,4941,72659095,72664324 -2 - chr11 72700538 72700553 chr11,72700538,72700722,-,L2a,LINE,L2,-2,3424,3212,72700536,72703933 -4 - chr11 72703941 72704044 chr11,72703941,72704044,+,MIR3,SINE,MIR,30,140,-68,72703912,72704112 +6 + chr11 72704831 72704946 chr11,72704831,72704946,-,L2b,LINE,L2,-6,3420,3260,72704825,72708205 -6 - chr11 72704923 72705089 chr11,72704923,72705089,+,MIRb,SINE,MIR,64,238,-30,72704860,72705119 +6 + chr11 72705389 72705468 chr11,72705389,72705468,+,MIR1_Amn,SINE,MIR,85,162,-68,72705305,72705536 +6 + chr11 72705472 72705607 chr11,72705472,72705625,-,MER58C,DNA,hAT-Charlie,0,215,59,72705472,72705683 -5 - chr11 73181172 73181197 chr11,73181020,73181197,-,L1M4,LINE,L1,-1060,5086,4912,73179960,73186108 -2 - chr11 73181209 73181426 chr11,73181209,73181426,-,L1M4b,LINE,L1,-6550,317,107,73174659,73181532 -6 - chr11 73181566 73181696 chr11,73181566,73182369,-,L1ME1,LINE,L1,-351,5828,5046,73181215,73187414 -5 - chr11 73214998 73215188 chr11,73214909,73215210,+,AluSz,SINE,Alu,1,301,-11,73214909,73215221 -5 + chr11 73238975 73239105 chr11,73238874,73239105,+,MIR,SINE,MIR,2,243,-19,73238873,73239124 +1 + chr11 73239955 73240090 chr11,73239955,73240090,+,MIR3,SINE,MIR,2,140,-90,73239954,73240180 +6 + chr11 73240545 73240688 chr11,73240545,73240688,-,MIR3,SINE,MIR,-27,181,10,73240518,73240697 -6 - chr11 73240898 73241268 chr11,73240898,73241268,+,MLT1A0,LTR,ERVL-MaLR,1,364,-1,73240898,73241269 +6 + chr11 73241389 73241434 chr11,73241389,73241434,+,MIRb,SINE,MIR,127,169,-99,73241263,73241533 +6 + chr11 73241439 73241811 chr11,73241439,73241811,-,LTR78B,LTR,ERV1,-7,1289,823,73241432,73242633 -6 - chr11 73241832 73241929 chr11,73241832,73241929,+,LTR33,LTR,ERVL,420,514,-1,73241413,73241930 +6 + chr11 73309323 73309356 chr11,73309323,73309356,+,(CCT)n,Simple_repeat,Simple_repeat,1,33,0,73309323,73309356 -6 + chr11 73722349 73722476 chr11,73722344,73722634,-,AluJb,SINE,Alu,-7,305,1,73722337,73722634 -1 - chr11 73722613 73722634 chr11,73722344,73722634,-,AluJb,SINE,Alu,-7,305,1,73722337,73722634 -1 - chr11 73928533 73928592 chr11,73928455,73928592,-,L1ME3G,LINE,L1,-255,669,511,73928200,73929102 -1 - chr11 73928611 73928661 chr11,73928611,73928661,-,L2b,LINE,L2,-223,3152,3103,73928388,73931763 -6 - chr11 73928723 73928810 chr11,73928723,73929018,-,AluSx3,SINE,Alu,-10,301,1,73928713,73929018 -4 - chr11 73930268 73930372 chr11,73930088,73930396,+,AluY,SINE,Alu,1,308,-3,73930088,73930399 +5 + chr11 73963891 73964078 chr11,73963891,73964078,+,MIR,SINE,MIR,7,259,-3,73963885,73964081 -5 + chr11 73964090 73964179 chr11,73964090,73964179,-,MIRc,SINE,MIR,-95,173,63,73963995,73964241 +6 - chr11 74204869 74205021 chr11,74204496,74205021,-,MER65C,LTR,ERV1,-15,446,1,74204481,74205021 -1 - chr11 74205612 74205695 chr11,74205612,74205695,+,L2c,LINE,L2,3270,3353,-34,74202343,74205729 +6 + chr11 74312153 74312217 chr11,74312153,74312217,-,L2b,LINE,L2,-221,3154,3088,74311932,74315304 -6 - chr11 74322234 74322285 chr11,74322080,74322285,-,L2b,LINE,L2,-454,2965,2749,74321626,74325033 -2 - chr11 74322707 74323079 chr11,74322596,74323079,+,MLT1H,LTR,ERVL-MaLR,13,549,0,74322584,74323079 +2 + chr11 74323079 74323265 chr11,74323079,74323265,+,MLT1H-int,LTR,ERVL-MaLR,1,185,-1224,74323079,74324489 +6 + chr11 74323266 74323446 chr11,74323266,74323446,+,MLT1H-int,LTR,ERVL-MaLR,525,708,-701,74322742,74324147 +6 + chr11 74323459 74323702 chr11,74323459,74323702,+,MLT1H-int,LTR,ERVL-MaLR,855,1100,-309,74322605,74324011 +6 + chr11 74323702 74323984 chr11,74323702,74323984,-,AluSz,SINE,Alu,-3,309,2,74323699,74323985 -6 - chr11 74323984 74324003 chr11,74323984,74324265,+,MLT1H-int,LTR,ERVL-MaLR,1101,1408,-1,74322884,74324266 +4 + chr11 74324095 74324210 chr11,74323984,74324265,+,MLT1H-int,LTR,ERVL-MaLR,1101,1408,-1,74322884,74324266 +3 + chr11 74324341 74324705 chr11,74324265,74324788,+,MLT1H,LTR,ERVL-MaLR,1,546,-3,74324265,74324791 +5 + chr11 74409060 74409165 chr11,74408949,74409193,-,L2c,LINE,L2,-14,3412,3123,74408935,74412315 -1 - chr11 74415847 74415949 chr11,74415787,74415949,-,MLT1L,LTR,ERVL-MaLR,-7,603,449,74415780,74416397 -2 - chr11 74428333 74428447 chr11,74428149,74428447,-,AluSz,SINE,Alu,-17,295,1,74428132,74428447 -2 - chr11 74428447 74428565 chr11,74428447,74428593,-,L1ME3Cz,LINE,L1,-1271,4875,4723,74427176,74433315 -5 - chr11 74455410 74455491 chr11,74455410,74455491,+,MADE2,DNA,TcMar-Mariner,1,80,0,74455410,74455491 +6 + chr11 74455498 74455634 chr11,74455498,74455634,-,MIR3,SINE,MIR,-8,200,58,74455490,74455691 -6 - chr11 74455717 74455772 chr11,74455717,74455982,-,AluSx1,SINE,Alu,-2,310,46,74455715,74456027 -4 - chr11 74456642 74456675 chr11,74456606,74456675,+,Arthur1B,DNA,hAT-Tip100,1148,1225,0,74455459,74456675 +2 + chr11 74493366 74493378 chr11,74493318,74493378,+,(GCACGC)n,Simple_repeat,Simple_repeat,1,62,0,74493318,74493378 +1 + chr11 74493874 74493973 chr11,74493874,74494088,-,L2a,LINE,L2,-5,3421,3206,74493869,74497293 -4 - chr11 74496649 74497549 chr11,74496645,74497549,+,Tigger4,DNA,TcMar-Tigger,1,923,-1808,74496645,74499357 +1 + chr11 74497546 74498533 chr11,74497546,74498644,+,Tigger4,DNA,TcMar-Tigger,1629,2731,0,74495918,74498644 +5 + chr11 74698231 74698371 chr11,74698058,74698371,-,AluSq2,SINE,Alu,-6,307,1,74698052,74698371 +5 - chr11 74698371 74698628 chr11,74698371,74698628,+,L2c,LINE,L2,3099,3387,0,74695273,74698628 -6 + chr11 74698631 74698660 chr11,74698631,74698660,+,(TGGA)n,Simple_repeat,Simple_repeat,1,29,0,74698631,74698660 -6 + chr11 74698676 74698722 chr11,74698676,74698722,+,(AC)n,Simple_repeat,Simple_repeat,1,46,0,74698676,74698722 -6 + chr11 74699260 74699655 chr11,74699260,74699655,+,L3,LINE,CR1,3680,4097,-2,74695581,74699657 -6 + chr11 74830574 74832057 chr11,74830032,74832057,+,L1M4,LINE,L1,2947,5050,-1096,74827086,74833153 -5 + chr11 74832290 74832310 chr11,74832290,74832310,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,74832290,74832310 -6 + chr11 75099172 75099502 chr11,75098023,75099502,+,LTR12C,LTR,ERV1,2,1579,0,75098022,75099502 -5 + chr11 75099502 75099518 chr11,75099502,75099613,+,AluJb,SINE,Alu,169,276,-36,75099334,75099649 -2 + chr11 75140085 75140126 chr11,75140009,75140126,-,AluSg7,SINE,Alu,-183,126,1,75139826,75140126 +4 - chr11 75210362 75210407 chr11,75210340,75210471,+,MIRb,SINE,MIR,64,204,-64,75210277,75210535 -3 + chr11 75210839 75211093 chr11,75210834,75211093,-,MLT1F1,LTR,ERVL-MaLR,-30,539,278,75210804,75211370 +5 - chr11 75211096 75211109 chr11,75211096,75211257,-,MLT1F1,LTR,ERVL-MaLR,-387,161,1,75210709,75211257 +2 - chr11 75215427 75215472 chr11,75215427,75215472,-,MIRc,SINE,MIR,-143,125,77,75215284,75215548 +6 - chr11 75241018 75241066 chr11,75241018,75241066,+,(GGCGCG)n,Simple_repeat,Simple_repeat,1,48,0,75241018,75241066 -1 + chr11 75260554 75260648 chr11,75260554,75260648,-,MIRc,SINE,MIR,-50,218,122,75260504,75260769 +6 - chr11 75261181 75261221 chr11,75261181,75261221,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,75261181,75261221 -6 + chr11 75261362 75261565 chr11,75261362,75261565,-,Charlie15a,DNA,hAT-Charlie,-32,192,1,75261330,75261565 +6 - chr11 75508353 75508391 chr11,75508353,75508542,-,MIRb,SINE,MIR,-26,242,50,75508327,75508591 +1 - chr11 75594101 75594141 chr11,75594073,75594141,-,MIR3,SINE,MIR,-48,160,88,75594025,75594228 -2 - chr11 75594525 75594665 chr11,75594525,75594672,+,L2c,LINE,L2,3207,3370,-5,75591319,75594677 +5 + chr11 75596144 75596277 chr11,75596098,75596277,-,MIRc,SINE,MIR,-25,243,62,75596073,75596338 +5 - chr11 75635981 75636132 chr11,75635981,75636132,-,MER5A,DNA,hAT-Charlie,0,189,35,75635981,75636166 +6 - chr11 75758545 75758584 chr11,75758545,75758584,-,L2c,LINE,L2,-60,3327,3289,75758485,75761872 +6 - chr11 75762432 75762544 chr11,75762432,75762742,+,AluY,SINE,Alu,2,310,-1,75762431,75762743 -2 + chr11 75764243 75764255 chr11,75764186,75764255,+,MIRb,SINE,MIR,101,179,-89,75764086,75764344 -4 + chr11 75764330 75764549 chr11,75764330,75764549,+,MIRb,SINE,MIR,18,256,-6,75764313,75764555 -6 + chr11 75776255 75776349 chr11,75776255,75776349,-,L2b,LINE,L2,0,3375,3275,75776255,75779623 -6 - chr11 75801672 75801877 chr11,75801659,75802175,-,MLT1F2,LTR,ERVL-MaLR,0,560,3,75801659,75802177 +3 - chr11 75803534 75803725 chr11,75803534,75804262,-,L1M4,LINE,L1,-3493,3151,2313,75800041,75806574 +2 - chr11 75809273 75809297 chr11,75809170,75809297,-,MIRc,SINE,MIR,-133,135,1,75809037,75809297 +5 - chr11 75813514 75813525 chr11,75813470,75813525,-,L2c,LINE,L2,-5,3370,3313,75813465,75816837 +5 - chr11 75813514 75813695 chr11,75813496,75813695,-,MIRb,SINE,MIR,-29,239,20,75813467,75813714 +5 - chr11 75813812 75813859 chr11,75813812,75813859,-,L2c,LINE,L2,-225,3162,3116,75813587,75816974 +6 - chr11 75815231 75815268 chr11,75815231,75815268,+,(CAGCGGCGG)n,Simple_repeat,Simple_repeat,1,37,0,75815231,75815268 -6 + chr11 75914503 75914588 chr11,75914503,75914793,-,AluSz,SINE,Alu,-22,290,1,75914481,75914793 -4 - chr11 75915131 75915213 chr11,75914962,75915266,+,AluSx,SINE,Alu,2,305,-7,75914961,75915273 +5 + chr11 76137616 76137731 chr11,76137616,76137914,+,AluJb,SINE,Alu,1,290,-22,76137616,76137936 -1 + chr11 76190725 76190871 chr11,76190633,76190871,+,MER103C,DNA,hAT-Charlie,27,297,0,76190607,76190871 +1 + chr11 76195023 76195071 chr11,76195023,76195090,+,(ACACCC)n,Simple_repeat,Simple_repeat,1,67,0,76195023,76195090 +5 + chr11 76210978 76211000 chr11,76210978,76211000,+,(GCGT)n,Simple_repeat,Simple_repeat,1,23,0,76210978,76211000 -6 + chr11 76215238 76215292 chr11,76215148,76215363,+,MIRc,SINE,MIR,3,211,-19,76215146,76215382 -3 + chr11 76392429 76392537 chr11,76392429,76392537,-,MIR3,SINE,MIR,-74,134,27,76392355,76392563 -6 - chr11 76441351 76441639 chr11,76441351,76441645,-,AluSp,SINE,Alu,-13,300,1,76441338,76441645 +5 - chr11 76444205 76444301 chr11,76444187,76444301,+,MIRb,SINE,MIR,121,253,-15,76444067,76444316 -4 + chr11 76625462 76625609 chr11,76625442,76625609,-,MIR,SINE,MIR,-12,250,48,76625430,76625656 +5 - chr11 76625729 76626030 chr11,76625729,76626275,-,MLT1G1,LTR,ERVL-MaLR,0,579,1,76625729,76626275 +2 - chr11 76626573 76626663 chr11,76626414,76626663,-,MIRb,SINE,MIR,-7,261,6,76626407,76626668 +4 - chr11 76626696 76626834 chr11,76626696,76626898,+,MIRb,SINE,MIR,13,234,-34,76626684,76626932 -1 + chr11 76654169 76654279 chr11,76653898,76654279,+,L2c,LINE,L2,2980,3385,-2,76650919,76654281 -5 + chr11 76654306 76654444 chr11,76654306,76654444,-,MIRc,SINE,MIR,-111,157,19,76654195,76654462 +6 - chr11 76654452 76654484 chr11,76654452,76654484,+,G-rich,Low_complexity,Low_complexity,1,32,0,76654452,76654484 -6 + chr11 76659665 76659694 chr11,76659665,76659716,+,(TGAGGA)n,Simple_repeat,Simple_repeat,1,52,0,76659665,76659716 +4 + chr11 76663317 76663468 chr11,76663317,76663468,-,MIR3,SINE,MIR,-52,156,16,76663265,76663483 -6 - chr11 76663769 76663866 chr11,76663769,76663936,-,MIRb,SINE,MIR,0,268,84,76663769,76664019 -5 - chr11 76675090 76675186 chr11,76675090,76675217,-,MIR3,SINE,MIR,-12,196,78,76675078,76675294 -4 - chr11 76702972 76703195 chr11,76702745,76703245,+,MLT1H,LTR,ERVL-MaLR,1,549,0,76702745,76703245 +5 + chr11 76712455 76712552 chr11,76712455,76712552,-,MIRc,SINE,MIR,-83,185,89,76712372,76712640 +6 - chr11 76759951 76760077 chr11,76759951,76760077,+,MIRb,SINE,MIR,82,212,-56,76759870,76760133 -6 + chr11 76800661 76800731 chr11,76800661,76800731,-,MIRb,SINE,MIR,-56,212,130,76800605,76800860 -6 - chr11 76800916 76801063 chr11,76800916,76801063,-,MIR3,SINE,MIR,-7,223,78,76800909,76801140 -6 - chr11 76801075 76801227 chr11,76801075,76801227,-,MER45A,DNA,hAT-Tip100,0,178,1,76801075,76801227 -6 - chr11 76802145 76802176 chr11,76802145,76802176,+,(CTCC)n,Simple_repeat,Simple_repeat,1,31,0,76802145,76802176 +6 + chr11 76802176 76802193 chr11,76802176,76802193,-,AluJb,SINE,Alu,-5,307,292,76802171,76802484 -6 - chr11 76802193 76802230 chr11,76802193,76802230,+,(TC)n,Simple_repeat,Simple_repeat,1,37,0,76802193,76802230 +6 + chr11 76802230 76802495 chr11,76802230,76802495,-,AluJb,SINE,Alu,-21,291,1,76802209,76802495 -6 - chr11 76802544 76802597 chr11,76802544,76802597,+,(ATACAGGA)n,Simple_repeat,Simple_repeat,1,56,0,76802544,76802597 +6 + chr11 76802812 76803042 chr11,76802812,76803042,+,MIR,SINE,MIR,2,243,-19,76802811,76803061 +6 + chr11 76803348 76803520 chr11,76803348,76803520,+,MamTip2,DNA,hAT-Tip100,18,204,-101,76803331,76803621 +6 + chr11 76803783 76803929 chr11,76803783,76803929,+,MLT1H2,LTR,ERVL-MaLR,1,152,-403,76803783,76804332 +6 + chr11 76803976 76804146 chr11,76803976,76804146,+,MLT1H2,LTR,ERVL-MaLR,307,489,0,76803670,76804146 +6 + chr11 76955417 76955585 chr11,76955366,76955793,-,MLT1A,LTR,ERVL-MaLR,0,374,1,76955366,76955793 +5 - chr11 76978401 76978619 chr11,76977630,76979181,+,MER52A,LTR,ERV1,1,1755,0,76977630,76979181 -1 + chr11 77473467 77473504 chr11,77473467,77473504,+,(CCCCA)n,Simple_repeat,Simple_repeat,1,39,0,77473467,77473504 +6 + chr11 77473568 77473594 chr11,77473568,77473594,+,(CTC)n,Simple_repeat,Simple_repeat,1,26,0,77473568,77473594 +6 + chr11 77473719 77473808 chr11,77473719,77473808,+,G-rich,Low_complexity,Low_complexity,1,95,0,77473719,77473808 +6 + chr11 77474130 77474212 chr11,77474130,77474212,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,82,0,77474130,77474212 +6 + chr11 77474211 77474243 chr11,77474211,77474243,+,(CGG)n,Simple_repeat,Simple_repeat,1,33,0,77474211,77474243 +6 + chr11 77474794 77474910 chr11,77474794,77474910,+,L2b,LINE,L2,2348,2461,-958,77472447,77475868 +6 + chr11 77474924 77475037 chr11,77474924,77475037,+,MIR,SINE,MIR,16,160,-102,77474909,77475139 +6 + chr11 77475114 77475322 chr11,77475114,77475322,+,L2b,LINE,L2,2472,2684,-735,77472643,77476057 +6 + chr11 77475573 77475666 chr11,77475573,77475666,+,L2b,LINE,L2,3041,3135,-252,77472533,77475918 +6 + chr11 77475806 77475876 chr11,77475806,77475876,+,L2b,LINE,L2,3345,3417,-9,77472462,77475885 +6 + chr11 77475889 77476178 chr11,77475889,77476178,+,AluSq2,SINE,Alu,1,291,-22,77475889,77476200 +6 + chr11 77476181 77476236 chr11,77476181,77476236,-,L2a,LINE,L2,-8,3418,3364,77476173,77479599 -6 - chr11 77476204 77476366 chr11,77476204,77476366,-,MIR,SINE,MIR,-25,237,72,77476179,77476437 -6 - chr11 77476404 77476529 chr11,77476404,77476529,+,MLT1D,LTR,ERVL-MaLR,6,128,-377,77476399,77476906 +6 + chr11 77476551 77476702 chr11,77476551,77476702,+,MLT1D,LTR,ERVL-MaLR,306,451,-54,77476246,77476756 +6 + chr11 77476702 77477010 chr11,77476702,77477010,+,AluSq2,SINE,Alu,1,312,-1,77476702,77477011 +6 + chr11 77477010 77477030 chr11,77477010,77477076,+,MLT1D,LTR,ERVL-MaLR,452,505,0,77476559,77477076 +5 + chr11 77717712 77717763 chr11,77717665,77717763,-,Charlie8,DNA,hAT-Charlie,-1117,1311,1211,77716548,77718973 +5 - chr11 77717776 77718001 chr11,77717776,77718001,-,Charlie8,DNA,hAT-Charlie,-1433,995,751,77716343,77718751 +6 - chr11 77718024 77718046 chr11,77718024,77718326,+,AluSp,SINE,Alu,1,303,-10,77718024,77718336 -2 + chr11 77718181 77718326 chr11,77718024,77718326,+,AluSp,SINE,Alu,1,303,-10,77718024,77718336 -4 + chr11 77718380 77718411 chr11,77718380,77718495,-,Charlie8,DNA,hAT-Charlie,-1783,645,530,77716597,77719024 +1 - chr11 77738680 77738930 chr11,77738679,77738980,-,AluSc8,SINE,Alu,-11,300,1,77738668,77738980 +5 - chr11 77739188 77739238 chr11,77739019,77739238,-,AluSx3,SINE,Alu,-92,219,1,77738927,77739238 +4 - chr11 77829654 77829851 chr11,77829405,77829851,+,L1M4,LINE,L1,4787,5194,-952,77824619,77830803 -5 + chr11 77829851 77830127 chr11,77829851,77830150,+,AluJr,SINE,Alu,3,304,-8,77829849,77830158 -2 + chr11 77850633 77850761 chr11,77850633,77850761,-,L1MC4,LINE,L1,0,8042,7903,77850633,77858663 -6 - chr11 77850761 77850817 chr11,77850761,77850817,+,(AC)n,Simple_repeat,Simple_repeat,1,56,0,77850761,77850817 +6 + chr11 77850817 77850953 chr11,77850817,77850953,-,L1MC4,LINE,L1,-140,7902,7749,77850677,77858701 -6 - chr11 77850953 77851000 chr11,77850953,77851252,-,AluSg7,SINE,Alu,-10,299,1,77850943,77851252 -4 - chr11 77851417 77851462 chr11,77851417,77851462,+,(GCTTTT)n,Simple_repeat,Simple_repeat,1,48,0,77851417,77851462 +6 + chr11 77851492 77851511 chr11,77851492,77851887,+,MSTA,LTR,ERVL-MaLR,1,422,-6,77851492,77851893 +5 + chr11 77866702 77866726 chr11,77866702,77866752,+,Alu,SINE,Alu,255,300,-1,77866448,77866753 -2 + chr11 78015715 78015902 chr11,78015691,78015902,-,LTR16A1,LTR,ERVL,-20,436,196,78015671,78016097 -1 - chr11 78015932 78016025 chr11,78015932,78016079,-,MER5A,DNA,hAT-Charlie,-7,182,32,78015925,78016110 -4 - chr11 78023534 78023666 chr11,78023502,78023666,-,AluJb,SINE,Alu,0,312,147,78023502,78023812 -2 - chr11 78023693 78023721 chr11,78023693,78023751,+,LTR24,LTR,ERV1,405,467,0,78023289,78023751 +5 + chr11 78141396 78141559 chr11,78141315,78141559,-,MLT1D,LTR,ERVL-MaLR,0,505,253,78141315,78141811 -2 - chr11 78141613 78141635 chr11,78141613,78141635,+,(TGA)n,Simple_repeat,Simple_repeat,1,22,0,78141613,78141635 +6 + chr11 78141902 78142192 chr11,78141902,78142192,-,AluSg7,SINE,Alu,-14,295,1,78141888,78142192 -5 - chr11 78142419 78142706 chr11,78142419,78142706,+,AluSx1,SINE,Alu,6,296,-16,78142414,78142722 +6 + chr11 78142708 78143016 chr11,78142708,78143016,+,AluSx1,SINE,Alu,1,310,-2,78142708,78143018 +6 + chr11 78148977 78149093 chr11,78148955,78149250,-,AluSz,SINE,Alu,-16,296,2,78148939,78149251 -3 - chr11 78167181 78167239 chr11,78166671,78167294,-,LTR58,LTR,ERV1,-37,642,1,78166634,78167294 -1 - chr11 78174751 78174803 chr11,78174751,78174803,+,A-rich,Low_complexity,Low_complexity,1,56,0,78174751,78174803 +6 + chr11 78174818 78174955 chr11,78174818,78174955,-,MER5B,DNA,hAT-Charlie,-56,122,1,78174762,78174955 -6 - chr11 78174993 78175041 chr11,78174993,78175041,-,MIR,SINE,MIR,-43,219,173,78174950,78175213 -6 - chr11 78175041 78175323 chr11,78175041,78175343,+,AluSq,SINE,Alu,2,303,-10,78175040,78175353 +5 + chr11 78388061 78388155 chr11,78388046,78388328,-,AluSz6,SINE,Alu,-17,295,1,78388029,78388328 -1 - chr11 78392136 78392265 chr11,78391960,78392265,+,AluSx3,SINE,Alu,3,309,-2,78391958,78392267 +2 + chr11 78423982 78424003 chr11,78423670,78424003,-,MER63B,DNA,hAT-Blackjack,0,436,94,78423670,78424096 +5 - chr11 78424003 78424618 chr11,78424003,78424618,-,L1MB7,LINE,L1,-21,6163,5491,78423982,78430108 +6 - chr11 78424626 78424717 chr11,78424626,78424717,-,MER63D,DNA,hAT-Blackjack,-946,115,25,78423680,78424741 +6 - chr11 78427309 78427368 chr11,78427284,78427368,-,L2b,LINE,L2,0,3375,3287,78427284,78430654 +4 - chr11 78533176 78533303 chr11,78533068,78533711,+,ERV24B_Prim-int,LTR,ERV1,1,658,-6955,78533068,78540666 +1 + chr11 78546509 78546586 chr11,78546482,78546586,+,L2a,LINE,L2,3251,3368,-58,78543232,78546644 +2 + chr11 78555215 78555369 chr11,78554530,78556148,-,L1PA14,LINE,L1,-1751,4395,2680,78552779,78558827 -3 - chr11 78756245 78756347 chr11,78756027,78756347,+,L2c,LINE,L2,3019,3385,-2,78753009,78756349 +2 + chr11 79092848 79092883 chr11,79092835,79093026,+,MIRc,SINE,MIR,37,249,-19,79092799,79093045 +1 + chr11 79093205 79093284 chr11,79093181,79093284,+,MLT1J,LTR,ERVL-MaLR,28,180,-332,79093154,79093616 +2 + chr11 79096031 79096264 chr11,79096031,79096264,+,MIR,SINE,MIR,1,252,-10,79096031,79096274 +6 + chr11 79096928 79096963 chr11,79096928,79096963,+,(CA)n,Simple_repeat,Simple_repeat,1,35,0,79096928,79096963 +6 + chr11 79096999 79097194 chr11,79096999,79097194,-,MIRb,SINE,MIR,-1,267,51,79096998,79097244 -6 - chr11 79097933 79097980 chr11,79097933,79097980,+,A-rich,Low_complexity,Low_complexity,1,48,0,79097933,79097980 +6 + chr11 79191558 79191792 chr11,79191094,79192772,+,SVA_D,Retroposon,SVA,1,1386,0,79191094,79192772 +1 + chr11 79611885 79611973 chr11,79611885,79611973,-,MIRb,SINE,MIR,-76,192,102,79611809,79612074 +6 - chr11 79966975 79967038 chr11,79966975,79967038,+,GA-rich,Low_complexity,Low_complexity,1,66,0,79966975,79967038 +6 + chr11 79967441 79967562 chr11,79967441,79967562,-,MIR3,SINE,MIR,-37,171,50,79967404,79967611 -6 - chr11 79967755 79967856 chr11,79967755,79967856,+,MIRb,SINE,MIR,26,136,-132,79967730,79967988 +6 + chr11 79968079 79968186 chr11,79968079,79968186,+,AluJb,SINE,Alu,1,109,-203,79968079,79968389 +6 + chr11 79968387 79968708 chr11,79968387,79968896,+,L1M2,LINE,L1,3860,4379,-1764,79964528,79970660 +5 + chr11 80321632 80321751 chr11,80321632,80321751,+,L2,LINE,L2,2793,2910,-509,80318840,80322260 -6 + chr11 80322069 80322107 chr11,80322069,80322107,+,(TCA)n,Simple_repeat,Simple_repeat,1,41,0,80322069,80322107 -6 + chr11 80322115 80322126 chr11,80322115,80322170,+,L2b,LINE,L2,3320,3372,-3,80318796,80322173 -2 + chr11 80751398 80751452 chr11,80751398,80751452,+,MIRb,SINE,MIR,32,85,-183,80751367,80751635 -6 + chr11 80751478 80751830 chr11,80751478,80751957,+,MLT1G1,LTR,ERVL-MaLR,10,579,0,80751469,80751957 -2 + chr11 80760484 80760574 chr11,80760450,80760680,-,MIRb,SINE,MIR,0,268,26,80760450,80760705 +3 - chr11 80761990 80762209 chr11,80761990,80762209,+,MIRb,SINE,MIR,9,226,-42,80761982,80762251 -6 + chr11 81879855 81880061 chr11,81879855,81880061,-,MLT1F1,LTR,ERVL-MaLR,0,569,328,81879855,81880388 +6 - chr11 81880059 81880167 chr11,81880059,81880248,-,MLT1F1,LTR,ERVL-MaLR,-340,208,1,81879719,81880248 +2 - chr11 81970994 81971234 chr11,81970754,81971234,+,L1MCb,LINE,L1,9,487,-5558,81970746,81976792 +1 + chr11 81971231 81971248 chr11,81971231,81971779,-,L1MC,LINE,L1,-2811,3335,2747,81968420,81974525 -4 - chr11 81987765 81987813 chr11,81987765,81987813,+,A-rich,Low_complexity,Low_complexity,1,49,0,81987765,81987813 +5 + chr11 82096461 82096608 chr11,82095913,82097001,+,FordPrefect,DNA,hAT-Tip100,537,1638,-45,82095377,82097046 -3 + chr11 82100013 82100163 chr11,82100013,82100163,-,AluSq2,SINE,Alu,-28,285,134,82099985,82100296 +1 - chr11 82100171 82100207 chr11,82100171,82100311,+,L1ME4c,LINE,L1,365,469,-361,82099807,82100672 -5 + chr11 82349977 82350004 chr11,82349977,82350134,+,MamTip2,DNA,hAT-Tip100,160,305,0,82349818,82350134 -2 + chr11 82356512 82356628 chr11,82356288,82356831,-,MLT1F2,LTR,ERVL-MaLR,-1,559,5,82356287,82356835 +3 - chr11 82403718 82403913 chr11,82403718,82405096,+,LTR12C,LTR,ERV1,3,1579,0,82403716,82405096 -1 + chr11 82603906 82603984 chr11,82603906,82603984,+,GA-rich,Low_complexity,Low_complexity,1,80,0,82603906,82603984 -6 + chr11 82604051 82604101 chr11,82604051,82604147,+,L2a,LINE,L2,3307,3410,-16,82600745,82604163 -2 + chr11 82618521 82618630 chr11,82618343,82618722,+,MSTA,LTR,ERVL-MaLR,1,428,0,82618343,82618722 -3 + chr11 82642427 82642497 chr11,82642209,82642587,+,MSTA,LTR,ERVL-MaLR,1,427,-1,82642209,82642588 -3 + chr11 82643355 82643419 chr11,82643355,82643476,+,L2c,LINE,L2,3110,3229,-158,82640246,82643634 -1 + chr11 82713069 82713118 chr11,82712663,82713134,+,L1ME5,LINE,L1,5693,6194,0,82706971,82713134 -3 + chr11 82717789 82717851 chr11,82717496,82717851,-,MLT1J1,LTR,ERVL-MaLR,0,444,116,82717496,82717966 +4 - chr11 82717851 82718082 chr11,82717851,82718125,+,AluSq2,SINE,Alu,25,298,-15,82717827,82718140 -1 + chr11 82963681 82963741 chr11,82963647,82963776,-,AluSc,SINE,Alu,-18,291,154,82963629,82963929 +5 - chr11 83038744 83038851 chr11,83038538,83038851,+,AluSq2,SINE,Alu,1,313,0,83038538,83038851 -4 + chr11 83038852 83039039 chr11,83038852,83039039,-,MIR,SINE,MIR,0,262,71,83038852,83039109 +6 - chr11 83072798 83073094 chr11,83072798,83073094,+,AluJb,SINE,Alu,1,288,-24,83072798,83073118 +6 + chr11 83077063 83077173 chr11,83077063,83077353,-,AluSg,SINE,Alu,-14,296,1,83077049,83077353 -5 - chr11 83083775 83083954 chr11,83083775,83083954,-,MER30,DNA,hAT-Charlie,0,230,34,83083775,83083987 -6 - chr11 83084008 83084138 chr11,83084008,83084304,+,AluSc,SINE,Alu,1,293,-16,83084008,83084320 +5 + chr11 83092033 83092143 chr11,83091841,83092143,-,AluY,SINE,Alu,-19,292,1,83091822,83092143 -2 - chr11 83096069 83096127 chr11,83095944,83096127,-,Charlie7,DNA,hAT-Charlie,-2402,210,5,83093542,83096131 +4 - chr11 83097135 83097196 chr11,83096985,83097218,+,MLT1J2,LTR,ERVL-MaLR,6,240,-208,83096980,83097426 -1 + chr11 83180144 83180384 chr11,83180078,83180384,-,AluSg,SINE,Alu,-2,308,2,83180076,83180385 -1 - chr11 83180384 83180468 chr11,83180384,83180468,-,HAL1,LINE,L1,-428,2079,1985,83179956,83182452 -6 - chr11 83184082 83184173 chr11,83183868,83184173,+,AluSq2,SINE,Alu,1,305,-8,83183868,83184181 +2 + chr11 83185961 83186084 chr11,83185961,83186084,-,MIRb,SINE,MIR,-16,252,121,83185945,83186204 +6 - chr11 83186178 83186332 chr11,83186178,83186332,-,L2a,LINE,L2,-192,3195,3033,83185986,83189364 +6 - chr11 83186411 83186535 chr11,83186411,83186535,-,AluJo,SINE,Alu,-187,125,1,83186224,83186535 +6 - chr11 83186550 83186654 chr11,83186550,83186654,-,L2a,LINE,L2,-505,2914,2807,83186045,83189460 +6 - chr11 83186797 83186886 chr11,83186797,83186886,+,Charlie4z,DNA,hAT-Charlie,39,134,-33,83186759,83186919 -6 + chr11 83190906 83190957 chr11,83190901,83190957,+,(TTCCTG)n,Simple_repeat,Simple_repeat,1,59,0,83190901,83190957 -5 + chr11 83191066 83191268 chr11,83191066,83191268,+,MIRb,SINE,MIR,13,255,-7,83191054,83191275 -1 + chr11 83191299 83191591 chr11,83191299,83191591,-,AluSq2,SINE,Alu,-15,298,7,83191284,83191597 +6 - chr11 83191595 83191658 chr11,83191595,83191658,+,MIR3,SINE,MIR,120,182,-26,83191476,83191684 -6 + chr11 83191756 83191924 chr11,83191756,83191924,-,L2c,LINE,L2,-37,3350,3172,83191719,83195095 +6 - chr11 83191936 83191980 chr11,83191936,83191980,+,MIRb,SINE,MIR,51,87,-181,83191886,83192161 -6 + chr11 83191980 83192491 chr11,83191980,83192491,+,HERV1_LTRb,LTR,ERV1,1,511,0,83191980,83192491 -5 + chr11 83192491 83192698 chr11,83192491,83192698,+,MIRb,SINE,MIR,88,268,0,83192404,83192698 -6 + chr11 83192949 83193009 chr11,83192949,83193009,+,L2c,LINE,L2,3288,3349,-38,83189662,83193047 -6 + chr11 83193099 83193200 chr11,83193099,83193260,+,MIRc,SINE,MIR,11,156,-112,83193089,83193372 -1 + chr11 83304923 83305124 chr11,83304914,83305381,+,MLT1D,LTR,ERVL-MaLR,1,505,0,83304914,83305381 +5 + chr11 83340467 83340508 chr11,83340204,83340508,-,L1MC4,LINE,L1,-5777,438,124,83334427,83340631 -2 - chr11 83419547 83419693 chr11,83419547,83422346,+,HERVH-int,LTR,ERV1,1,2830,-4883,83419547,83427229 +4 + chr11 83421569 83422346 chr11,83419547,83422346,+,HERVH-int,LTR,ERV1,1,2830,-4883,83419547,83427229 +2 + chr11 83422346 83422726 chr11,83422346,83422726,+,HERVH-int,LTR,ERV1,3357,3735,-3978,83418990,83426704 +6 + chr11 83422730 83423064 chr11,83422730,83423064,+,HERVH-int,LTR,ERV1,3994,4308,-3405,83418737,83426469 +6 + chr11 83423062 83423141 chr11,83423062,83423141,+,HERVH-int,LTR,ERV1,7638,7713,0,83415425,83423141 +6 + chr11 83423141 83423516 chr11,83423141,83423556,+,LTR7,LTR,ERV1,1,448,-2,83423141,83423558 +5 + chr11 83646709 83646822 chr11,83646709,83646822,-,L3,LINE,CR1,-426,3673,3576,83646283,83650397 -6 - chr11 83646826 83647090 chr11,83646826,83647804,-,HAL1,LINE,L1,-1430,1077,25,83645396,83647828 -4 - chr11 83647504 83647594 chr11,83646826,83647804,-,HAL1,LINE,L1,-1430,1077,25,83645396,83647828 -3 - chr11 83647873 83647951 chr11,83647828,83647951,-,L3,LINE,CR1,-753,3346,3215,83647075,83651165 -2 - chr11 83651619 83651659 chr11,83651619,83651659,+,GA-rich,Low_complexity,Low_complexity,1,40,0,83651619,83651659 +6 + chr11 83692021 83692075 chr11,83691943,83692136,-,MIRb,SINE,MIR,-46,222,24,83691897,83692159 -3 - chr11 83692929 83693071 chr11,83692728,83693149,+,MLT1J1,LTR,ERVL-MaLR,1,444,0,83692728,83693149 +3 + chr11 83725213 83725325 chr11,83725213,83725325,+,MamTip2,DNA,hAT-Tip100,20,126,-179,83725194,83725504 +6 + chr11 84720837 84720858 chr11,84720837,84720858,+,(GAA)n,Simple_repeat,Simple_repeat,1,21,0,84720837,84720858 +6 + chr11 84800531 84800624 chr11,84800516,84800624,-,MIR3,SINE,MIR,-61,147,32,84800455,84800655 -2 - chr11 84936689 84936740 chr11,84936578,84936740,+,L1ME4a,LINE,L1,5941,6121,-3,84930638,84936743 +1 + chr11 84955340 84955460 chr11,84955232,84955460,-,MIR,SINE,MIR,-19,243,5,84955213,84955464 -2 - chr11 84955573 84955705 chr11,84955573,84955927,-,Charlie22a,DNA,hAT-Charlie,-72,419,53,84955501,84955979 -5 - chr11 85852557 85853675 chr11,85852346,85853675,+,SVA_C,Retroposon,SVA,2,1382,-2,85852345,85853677 -5 + chr11 85853816 85853840 chr11,85853816,85853840,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,85853816,85853840 -6 + chr11 85853861 85854121 chr11,85853861,85854121,-,AluSz,SINE,Alu,-19,293,16,85853842,85854136 +6 - chr11 85854742 85854816 chr11,85854742,85854816,-,MIR3,SINE,MIR,-47,161,85,85854695,85854900 +6 - chr11 85916502 85916743 chr11,85916464,85916830,-,MLT1F,LTR,ERVL-MaLR,-6,542,161,85916458,85916990 +5 - chr11 85923306 85923331 chr11,85923128,85923476,+,Tigger4b,DNA,TcMar-Tigger,2,359,-2,85923127,85923478 -3 + chr11 85923579 85923682 chr11,85923476,85923685,+,LTR33,LTR,ERVL,291,501,-14,85923186,85923699 -1 + chr11 86192868 86192914 chr11,86192868,86193019,+,MIRb,SINE,MIR,72,247,-21,86192797,86193040 -2 + chr11 86431590 86431600 chr11,86431557,86431600,+,(CGGCTG)n,Simple_repeat,Simple_repeat,1,46,0,86431557,86431600 +1 + chr11 86432578 86432642 chr11,86432578,86434086,-,LTR12C,LTR,ERV1,0,1579,3,86432578,86434088 -4 - chr11 86434924 86435208 chr11,86434880,86435208,+,L1MEd,LINE,L1,2474,2815,-3331,86432407,86438539 -5 + chr11 86435256 86435622 chr11,86435256,86435622,+,L1MEg2,LINE,L1,2,377,-6075,86435255,86441697 -6 + chr11 86435622 86436052 chr11,86435622,86436052,-,LTR16,LTR,ERVL,0,438,4,86435622,86436055 +6 - chr11 86436052 86436168 chr11,86436052,86436168,+,L1MEg2,LINE,L1,378,487,-5965,86435675,86442133 -6 + chr11 86436170 86436936 chr11,86436170,86436936,-,L1M4,LINE,L1,-929,5515,4776,86435241,86441711 +6 - chr11 86436936 86437282 chr11,86436936,86437355,-,L1PB4,LINE,L1,-12,6144,5717,86436924,86443071 +1 - chr11 86761951 86762034 chr11,86761764,86762034,+,MER92-int,LTR,ERV1,4421,4714,-504,86757344,86762538 +2 + chr11 86837486 86837615 chr11,86837486,86837781,+,AluSc8,SINE,Alu,1,296,-15,86837486,86837796 +5 + chr11 86909032 86909163 chr11,86909032,86909163,-,MIRb,SINE,MIR,-122,146,6,86908910,86909168 +6 - chr11 86909465 86909546 chr11,86909465,86909546,-,MIR3,SINE,MIR,-46,162,79,86909419,86909624 +6 - chr11 86910806 86910935 chr11,86910806,86910935,+,L2a,LINE,L2,3273,3411,-15,86907534,86910950 -6 + chr11 86911321 86911660 chr11,86911321,86911660,-,L1PA17,LINE,L1,-18,6148,5813,86911303,86917472 +6 - chr11 86911761 86911792 chr11,86911761,86911792,+,(GT)n,Simple_repeat,Simple_repeat,1,31,0,86911761,86911792 -6 + chr11 86911792 86912076 chr11,86911792,86912076,-,AluJo,SINE,Alu,-33,279,1,86911759,86912076 +6 - chr11 86921261 86921392 chr11,86921261,86921392,+,L2a,LINE,L2,3277,3420,-6,86917985,86921398 -6 + chr11 86957982 86958026 chr11,86957898,86958090,-,MIRb,SINE,MIR,-12,256,18,86957886,86958107 -3 - chr11 87000738 87000811 chr11,87000738,87000811,-,L1ME4a,LINE,L1,-4,6120,6049,87000734,87006859 -6 - chr11 87000875 87000961 chr11,87000875,87001078,-,L1ME4c,LINE,L1,-149,681,479,87000726,87001556 -5 - chr11 87121094 87121202 chr11,87121094,87121202,-,L2c,LINE,L2,-231,3156,3039,87120863,87124240 -6 - chr11 87121255 87121499 chr11,87121255,87121499,-,L2a,LINE,L2,0,3426,3110,87121255,87124608 -6 - chr11 87490144 87490286 chr11,87490045,87490286,+,L1ME1,LINE,L1,6118,6352,0,87483928,87490286 +1 + chr11 87491071 87491110 chr11,87491071,87491268,+,MIRb,SINE,MIR,10,221,-47,87491062,87491315 +5 + chr11 87565994 87566013 chr11,87565984,87566013,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,87565984,87566013 +1 + chr11 87566013 87566132 chr11,87566013,87566132,-,AluY,SINE,Alu,-193,118,1,87565820,87566132 -6 - chr11 87566132 87566188 chr11,87566132,87566188,-,L1MEc,LINE,L1,-6293,188,137,87559839,87566324 -6 - chr11 87718724 87718777 chr11,87718724,87718777,-,OldhAT1,DNA,hAT-Ac,-541,2307,2255,87718183,87721031 +6 - chr11 87720007 87720341 chr11,87720007,87720341,-,L1M5,LINE,L1,-240,5884,5547,87719767,87725887 +6 - chr11 87720520 87720549 chr11,87720520,87720549,+,(AC)n,Simple_repeat,Simple_repeat,1,29,0,87720520,87720549 -6 + chr11 87720749 87720964 chr11,87720749,87720964,+,MIR,SINE,MIR,8,230,-32,87720742,87720996 -6 + chr11 87721157 87721233 chr11,87721157,87721470,-,L1M5,LINE,L1,-1134,5012,4668,87720023,87726137 +1 - chr11 87816999 87817086 chr11,87816932,87817086,-,MIR,SINE,MIR,0,262,104,87816932,87817189 -1 - chr11 88098591 88098608 chr11,88098442,88098608,+,MIRc,SINE,MIR,16,186,-22,88098427,88098630 +1 + chr11 88165867 88166251 chr11,88165867,88166251,-,L2c,LINE,L2,-107,3280,2911,88165760,88169161 +6 - chr11 88166208 88166306 chr11,88166208,88166306,+,Tigger19a,DNA,TcMar-Tigger,206,306,-17,88166003,88166323 -6 + chr11 88166426 88166575 chr11,88166426,88166575,+,MIR3,SINE,MIR,38,186,-22,88166389,88166597 -6 + chr11 88166806 88166841 chr11,88166806,88166841,+,(ATTATAT)n,Simple_repeat,Simple_repeat,1,37,0,88166806,88166841 -6 + chr11 88166953 88167257 chr11,88166953,88167257,-,L2a,LINE,L2,-5,3421,3023,88166948,88170279 +6 - chr11 88508077 88508115 chr11,88508077,88508115,+,A-rich,Low_complexity,Low_complexity,1,38,0,88508077,88508115 +6 + chr11 89300876 89300909 chr11,89300876,89300909,+,(ATATAG)n,Simple_repeat,Simple_repeat,1,33,0,89300876,89300909 -6 + chr11 89300896 89300926 chr11,89300896,89300926,+,(ACAC)n,Simple_repeat,Simple_repeat,1,30,0,89300896,89300926 -6 + chr11 89301027 89301380 chr11,89301027,89301380,-,THE1B,LTR,ERVL-MaLR,0,364,1,89301027,89301380 +6 - chr11 89301384 89301477 chr11,89301384,89301593,+,L2,LINE,L2,1606,1831,-1588,89299779,89303181 -1 + chr11 89533645 89533658 chr11,89533577,89533658,+,MLT1J2,LTR,ERVL-MaLR,310,424,-20,89533268,89533678 -5 + chr11 89545433 89545495 chr11,89545433,89545495,-,L1ME4a,LINE,L1,-11,6113,6052,89545422,89551546 -6 - chr11 89545707 89545724 chr11,89545707,89545724,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,89545707,89545724 +6 + chr11 89546637 89546695 chr11,89546559,89546950,-,MSTD,LTR,ERVL-MaLR,0,396,1,89546559,89546950 +5 - chr11 89548131 89548493 chr11,89548131,89548493,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,89548131,89548493 -6 + chr11 89577453 89577652 chr11,89577453,89577707,-,MIRb,SINE,MIR,-6,262,2,89577447,89577708 -5 - chr11 89589440 89589611 chr11,89589298,89589739,+,MLT1G3,LTR,ERVL-MaLR,74,523,-56,89589225,89589795 -1 + chr11 89704164 89704413 chr11,89703872,89704413,-,LTR54,LTR,ERV1,0,510,1,89703872,89704413 -1 - chr11 89704483 89704658 chr11,89704483,89704927,-,L2,LINE,L2,-1066,2353,1921,89703417,89706847 -5 - chr11 89754678 89754953 chr11,89754678,89754992,-,AluSq2,SINE,Alu,-2,311,3,89754676,89754994 +1 - chr11 90126040 90126061 chr11,90126040,90126061,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,90126040,90126061 +5 + chr11 90194031 90194228 chr11,90194031,90194228,+,L1MC,LINE,L1,5600,5794,-2088,90188432,90196316 +6 + chr11 90194279 90194329 chr11,90194279,90194329,+,A-rich,Low_complexity,Low_complexity,1,50,0,90194279,90194329 +6 + chr11 90194960 90195288 chr11,90194960,90195288,+,L1MEg2,LINE,L1,1,358,-6094,90194960,90201382 +6 + chr11 90196461 90196687 chr11,90196461,90196687,+,MIR,SINE,MIR,15,248,-14,90196447,90196701 +6 + chr11 90224225 90224432 chr11,90224225,90224432,-,L1ME4c,LINE,L1,-359,471,266,90223866,90224697 -6 - chr11 90224632 90224758 chr11,90224632,90224758,-,L1ME4a,LINE,L1,-29,6095,5971,90224603,90230728 -6 - chr11 90224906 90224940 chr11,90224906,90224940,+,(TTCCAC)n,Simple_repeat,Simple_repeat,1,35,0,90224906,90224940 +6 + chr11 90225236 90225530 chr11,90225236,90225530,+,AluSp,SINE,Alu,1,292,-21,90225236,90225551 +6 + chr11 90225532 90225561 chr11,90225532,90225561,+,(AATA)n,Simple_repeat,Simple_repeat,1,30,0,90225532,90225561 +6 + chr11 90225944 90226215 chr11,90225944,90226215,-,L1M6,LINE,L1,-3738,2663,2334,90222206,90228548 -6 - chr11 90226264 90226371 chr11,90226264,90226371,+,MIRb,SINE,MIR,104,225,-43,90226161,90226414 +6 + chr11 90251232 90251317 chr11,90251016,90251397,+,MSTA,LTR,ERVL-MaLR,3,426,-2,90251014,90251399 +1 + chr11 90489310 90489352 chr11,90489082,90489436,+,THE1B,LTR,ERVL-MaLR,1,364,0,90489082,90489436 +1 + chr11 90491719 90491789 chr11,90491537,90491872,+,THE1B,LTR,ERVL-MaLR,1,364,0,90491537,90491872 +1 + chr11 90602805 90602908 chr11,90602631,90602982,+,THE1A,LTR,ERVL-MaLR,1,353,-2,90602631,90602984 +3 + chr11 90716397 90716440 chr11,90715171,90717394,-,L1MA4,LINE,L1,-3206,4359,1955,90711965,90719348 -3 - chr11 90731412 90731537 chr11,90731412,90731537,-,MER5A1,DNA,hAT-Charlie,0,166,39,90731412,90731575 -6 - chr11 90801766 90801862 chr11,90801679,90801868,-,LTR49-int,LTR,ERV1,-5104,252,53,90796575,90801920 -3 - chr11 90844909 90844957 chr11,90844909,90844999,+,L1PB4,LINE,L1,5955,6044,-112,90838955,90845111 +4 + chr11 90852157 90852292 chr11,90852157,90852292,+,L1MEc,LINE,L1,111,247,-6153,90852047,90858445 +6 + chr11 90852307 90852821 chr11,90852307,90852821,-,L1M5,LINE,L1,-2199,3947,3384,90850108,90856204 -5 - chr11 90853584 90853627 chr11,90853584,90853627,+,A-rich,Low_complexity,Low_complexity,1,45,0,90853584,90853627 +6 + chr11 90853748 90853798 chr11,90853748,90853820,+,GA-rich,Low_complexity,Low_complexity,1,73,0,90853748,90853820 +5 + chr11 90863353 90863448 chr11,90863135,90863448,+,MLT1A0,LTR,ERVL-MaLR,2,293,-72,90863134,90863520 +5 + chr11 90863448 90863620 chr11,90863448,90863620,-,L1MD,LINE,L1,-2064,4082,3935,90861384,90867554 -6 - chr11 90863656 90863696 chr11,90863656,90863961,+,AluY,SINE,Alu,1,294,-17,90863656,90863978 +5 + chr11 91013787 91014097 chr11,91013096,91014097,+,L1ME1,LINE,L1,4212,5354,-792,91008885,91014889 +1 + chr11 91014126 91014786 chr11,91014126,91014786,+,L1ME1,LINE,L1,5483,6179,0,91008644,91014786 +6 + chr11 91015165 91015299 chr11,91015165,91015482,+,AluY,SINE,Alu,1,311,0,91015165,91015482 +5 + chr11 91094212 91094256 chr11,91094212,91094256,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,91094212,91094256 -6 + chr11 91185105 91185136 chr11,91185105,91185136,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,91185105,91185136 -6 + chr11 91209579 91209590 chr11,91209579,91209967,+,L1MEd,LINE,L1,719,1130,-5956,91208861,91215923 -1 + chr11 91383140 91383289 chr11,91383140,91383294,-,MER20B,DNA,hAT-Charlie,-610,173,6,91382530,91383299 -5 - chr11 91794362 91794422 chr11,91794002,91794543,-,MER51A,LTR,ERV1,0,634,1,91794002,91794543 -1 - chr11 91796001 91796108 chr11,91795994,91796381,-,L1MA10,LINE,L1,-7,6327,5949,91795987,91802329 -3 - chr11 91800221 91800591 chr11,91799789,91800591,+,LTR2752,LTR,ERV1,531,1263,0,91799259,91800591 +2 + chr11 91811989 91812217 chr11,91811937,91812217,-,MLT1O,LTR,ERVL-MaLR,-185,357,77,91811752,91812293 -2 - chr11 91992833 91992862 chr11,91992655,91992862,-,AluJr,SINE,Alu,-20,292,92,91992635,91992953 -1 - chr11 91992877 91992903 chr11,91992877,91992903,+,(TTTAT)n,Simple_repeat,Simple_repeat,1,27,0,91992877,91992903 +6 + chr11 91992910 91993192 chr11,91992910,91993192,-,HAL1,LINE,L1,-1612,895,618,91991298,91993809 -6 - chr11 92408047 92408176 chr11,92407984,92408378,-,MLT1A,LTR,ERVL-MaLR,0,374,1,92407984,92408378 +1 - chr11 92748993 92749069 chr11,92748993,92749086,+,MIR1_Amn,SINE,MIR,50,155,-75,92748944,92749161 -2 + chr11 92966539 92966603 chr11,92966199,92966802,-,L1MC1,LINE,L1,-191,6142,5539,92966008,92972340 -5 - chr11 93071545 93071660 chr11,93071545,93071660,+,L1ME3,LINE,L1,6039,6154,-8,93065507,93071668 +6 + chr11 93133900 93134097 chr11,93133900,93134097,-,Charlie25,DNA,hAT-Charlie,-1828,696,485,93132072,93134581 -6 - chr11 93171420 93171611 chr11,93171420,93171611,+,MIRc,SINE,MIR,28,268,0,93171393,93171611 +6 + chr11 93206990 93207005 chr11,93206910,93207005,+,L1M3e,LINE,L1,1497,1591,-5439,93205414,93212444 -5 + chr11 93207133 93207426 chr11,93207133,93207426,-,AluJo,SINE,Alu,-19,293,1,93207114,93207426 +6 - chr11 93240133 93240222 chr11,93240085,93240222,+,MLT1K,LTR,ERVL-MaLR,293,430,-165,93239793,93240387 +1 + chr11 93286629 93286911 chr11,93286601,93286911,-,AluY,SINE,Alu,-3,308,2,93286598,93286912 +5 - chr11 93286911 93287382 chr11,93286911,93287382,+,L2a,LINE,L2,2922,3426,0,93283990,93287382 -6 + chr11 93287556 93287925 chr11,93287556,93287925,-,THE1D,LTR,ERVL-MaLR,0,381,1,93287556,93287925 +6 - chr11 93288256 93288511 chr11,93288256,93288511,+,LTR67B,LTR,ERVL,72,310,-310,93288185,93288821 -6 + chr11 93288561 93288903 chr11,93288561,93289702,-,LTR78,LTR,ERV1,-111,1193,1,93288450,93289702 +1 - chr11 93587883 93588004 chr11,93587883,93588004,-,L3,LINE,CR1,-192,3907,3762,93587691,93591765 -6 - chr11 93588460 93588559 chr11,93588460,93588641,+,MIR,SINE,MIR,6,176,-86,93588455,93588727 +5 + chr11 93592187 93592226 chr11,93591933,93592226,+,AluSx,SINE,Alu,1,293,-19,93591933,93592245 +1 + chr11 93592302 93592610 chr11,93592302,93592610,-,AluSx1,SINE,Alu,0,312,1,93592302,93592610 -6 - chr11 93721665 93721701 chr11,93721665,93721701,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,93721665,93721701 +6 + chr11 93727692 93727817 chr11,93727692,93727817,-,FLAM_C,SINE,Alu,-3,130,1,93727689,93727817 +6 - chr11 93727964 93728158 chr11,93727964,93728158,-,L3,LINE,CR1,-63,4036,3839,93727901,93731996 +6 - chr11 93729190 93729330 chr11,93729190,93729330,+,AluJb,SINE,Alu,43,188,-124,93729148,93729454 -6 + chr11 93729330 93729392 chr11,93729330,93729392,+,AluJb,SINE,Alu,220,284,-17,93729111,93729409 -6 + chr11 94238150 94238277 chr11,94232524,94238528,-,L1PA2,LINE,L1,-3,6152,124,94232521,94238651 -1 - chr11 94279136 94279196 chr11,94279136,94279196,+,(CATT)n,Simple_repeat,Simple_repeat,1,63,0,94279136,94279196 +6 + chr11 94472908 94473189 chr11,94472875,94473189,-,L2a,LINE,L2,-141,3285,2958,94472734,94476146 +5 - chr11 94559075 94559280 chr11,94559075,94559280,-,MIRb,SINE,MIR,-45,223,9,94559030,94559288 -6 - chr11 94638038 94638069 chr11,94637949,94638128,+,L2c,LINE,L2,3186,3349,-38,94634764,94638166 +1 + chr11 94639562 94639623 chr11,94639427,94639623,+,MLT1O,LTR,ERVL-MaLR,1,199,-343,94639427,94639966 +2 + chr11 94639826 94639897 chr11,94639814,94639926,+,MLT1O,LTR,ERVL-MaLR,402,513,-29,94639413,94639955 +3 + chr11 94640214 94640291 chr11,94639948,94640291,+,MER61A,LTR,ERV1,1,341,0,94639948,94640291 +2 + chr11 94640583 94640658 chr11,94640318,94640658,+,MLT1E1A,LTR,ERVL-MaLR,1,459,-194,94640318,94640852 +2 + chr11 94640658 94640688 chr11,94640658,94640688,+,(ACC)n,Simple_repeat,Simple_repeat,1,30,0,94640658,94640688 +6 + chr11 94640688 94640833 chr11,94640688,94640837,+,MLT1E1A,LTR,ERVL-MaLR,460,638,-15,94640229,94640852 +5 + chr11 94641907 94641944 chr11,94641600,94642009,+,LTR7,LTR,ERV1,1,448,-2,94641600,94642011 +1 + chr11 94647335 94647450 chr11,94647311,94647450,-,MIRc,SINE,MIR,-107,161,21,94647204,94647470 -1 - chr11 94647446 94647578 chr11,94647446,94648137,-,L2b,LINE,L2,0,3375,2655,94647446,94650791 -1 - chr11 94648017 94648108 chr11,94647446,94648137,-,L2b,LINE,L2,0,3375,2655,94647446,94650791 -1 - chr11 94650474 94650507 chr11,94650207,94650507,+,MER51B,LTR,ERV1,68,377,0,94650140,94650507 +2 + chr11 94650509 94650537 chr11,94650509,94657040,+,HERV4_I-int,LTR,ERV1,1,6539,0,94650509,94657040 +5 + chr11 94651477 94651631 chr11,94650509,94657040,+,HERV4_I-int,LTR,ERV1,1,6539,0,94650509,94657040 +5 + chr11 94679456 94679536 chr11,94679456,94679596,+,MIRc,SINE,MIR,104,244,-24,94679353,94679620 -2 + chr11 94925425 94925521 chr11,94925342,94925699,-,THE1D,LTR,ERVL-MaLR,0,381,1,94925342,94925699 +1 - chr11 95152011 95152024 chr11,95152011,95152299,-,L2,LINE,L2,-472,2947,2627,95151539,95154925 -4 - chr11 95157879 95157945 chr11,95157879,95157945,-,L2a,LINE,L2,-36,3390,3321,95157843,95161265 -6 - chr11 95157992 95158057 chr11,95157992,95158217,+,MIR,SINE,MIR,1,229,-33,95157992,95158250 +5 + chr11 95158609 95158642 chr11,95158592,95158642,-,MIRb,SINE,MIR,-110,158,104,95158482,95158745 -2 - chr11 95158642 95158925 chr11,95158642,95158925,+,AluSx1,SINE,Alu,2,284,-28,95158641,95158953 +6 + chr11 95158925 95158995 chr11,95158925,95158995,-,MIRb,SINE,MIR,-165,103,29,95158760,95159023 -6 - chr11 95204806 95204826 chr11,95204458,95204826,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,95204458,95204826 +2 + chr11 95204847 95204880 chr11,95204847,95204967,-,L2c,LINE,L2,-38,3349,3214,95204809,95208180 -5 - chr11 95231151 95231265 chr11,95231151,95231265,+,(GCC)n,Simple_repeat,Simple_repeat,1,118,0,95231151,95231265 +6 + chr11 95231753 95231799 chr11,95231753,95231799,-,AmnSINE1,SINE,5S-Deu-L2,-16,559,512,95231737,95232310 -6 - chr11 95482406 95482660 chr11,95481778,95483422,+,SVA_D,Retroposon,SVA,1,1385,-1,95481778,95483423 +1 + chr11 95497494 95497553 chr11,95497490,95497582,+,MLT1M,LTR,ERVL-MaLR,153,255,-417,95497338,95497999 +5 + chr11 95698086 95698210 chr11,95698001,95698465,-,L2c,LINE,L2,-495,2924,2408,95697506,95700872 -1 - chr11 96447383 96447462 chr11,96447383,96447535,-,Tigger20a,DNA,TcMar-Tigger,-673,300,146,96446710,96447680 +2 - chr11 96449932 96450033 chr11,96449761,96450044,+,AluJb,SINE,Alu,4,286,-26,96449758,96450070 -3 + chr11 96506729 96506826 chr11,96506660,96506968,+,LTR46-int,LTR,ERV1,6674,6985,0,96499987,96506968 -1 + chr11 96512070 96512080 chr11,96512024,96512870,-,L1MC4,LINE,L1,-547,7495,7111,96511477,96519980 -3 - chr11 96514715 96514748 chr11,96514715,96514749,+,(ATCAA)n,Simple_repeat,Simple_repeat,1,35,0,96514715,96514749 +5 + chr11 96590317 96590474 chr11,96588087,96591471,+,HERVH-int,LTR,ERV1,1,3290,-4423,96588087,96595894 +1 + chr11 96660741 96660899 chr11,96660506,96661046,+,MLT2F,LTR,ERVL,1,595,-68,96660506,96661114 +3 + chr11 96712611 96712758 chr11,96712579,96712758,-,AluSc,SINE,Alu,-4,305,127,96712575,96712884 -2 - chr11 96713379 96713418 chr11,96713379,96713418,+,(TTTTTA)n,Simple_repeat,Simple_repeat,1,40,0,96713379,96713418 +6 + chr11 97222934 97223020 chr11,97222934,97223113,-,L2c,LINE,L2,-179,3208,3036,97222755,97226148 +2 - chr11 97259446 97259662 chr11,97259438,97260126,-,FordPrefect,DNA,hAT-Tip100,-657,1026,313,97258781,97260438 +1 - chr11 97259848 97259987 chr11,97259438,97260126,-,FordPrefect,DNA,hAT-Tip100,-657,1026,313,97258781,97260438 +1 - chr11 97878781 97878901 chr11,97878737,97878906,-,MLT1A,LTR,ERVL-MaLR,0,374,201,97878737,97879106 +5 - chr11 97918786 97918976 chr11,97918786,97919088,+,L4_A_Mam,LINE,RTE-X,472,783,-4207,97918315,97923295 -2 + chr11 97942606 97942762 chr11,97942343,97942778,+,MLT1C,LTR,ERVL-MaLR,6,465,-2,97942338,97942780 -1 + chr11 98676391 98676509 chr11,98674261,98677350,-,L1PA16,LINE,L1,-9,6494,3471,98674252,98680820 -1 - chr11 98680072 98680202 chr11,98679135,98680879,-,L1PA16,LINE,L1,-4200,2303,516,98674935,98681394 -3 - chr11 98938912 98939194 chr11,98938866,98939194,-,MLT1A1,LTR,ERVL-MaLR,-2,406,1,98938864,98939194 +5 - chr11 100684162 100684259 chr11,100684134,100684259,+,L1MB4,LINE,L1,5871,6000,-180,100678264,100684439 -5 + chr11 102107916 102108076 chr11,102107916,102108076,-,UCON6,Unknown,Unknown,-201,236,63,102107715,102108138 -6 - chr11 102108149 102108448 chr11,102108149,102108448,-,AluSx,SINE,Alu,-20,292,1,102108129,102108448 -6 - chr11 102108651 102108872 chr11,102108651,102108872,-,MIR,SINE,MIR,0,262,27,102108651,102108898 -6 - chr11 102109246 102109372 chr11,102109246,102109372,+,L1MB8,LINE,L1,6072,6178,0,102103175,102109372 +6 + chr11 102461845 102461940 chr11,102461845,102461940,+,LTR103_Mam,LTR,ERV1?,350,446,-29,102461496,102461969 +6 + chr11 102467255 102467281 chr11,102466901,102467281,-,MER70B,LTR,ERVL,-133,445,4,102466768,102467284 -1 - chr11 102493780 102493841 chr11,102493768,102493841,-,L2a,LINE,L2,-6,3420,3343,102493762,102497183 -2 - chr11 102498507 102498531 chr11,102498365,102498531,-,MLT1J,LTR,ERVL-MaLR,-315,197,22,102498050,102498552 -2 - chr11 102498553 102498801 chr11,102498553,102498952,-,MLT1J-int,LTR,ERVL-MaLR,-5,1382,944,102498548,102499895 -5 - chr11 102606916 102606993 chr11,102606779,102607017,+,MIR,SINE,MIR,14,262,0,102606766,102607017 +1 + chr11 102626659 102626780 chr11,102626504,102626862,+,THE1D,LTR,ERVL-MaLR,1,381,0,102626504,102626862 +3 + chr11 102627919 102628070 chr11,102627919,102628071,+,L2a,LINE,L2,3252,3426,0,102624668,102628071 +5 + chr11 103050722 103050901 chr11,103050722,103050901,-,L2c,LINE,L2,-1,3386,3204,103050721,103054104 +6 - chr11 103051573 103051612 chr11,103051573,103051612,+,(ATCATTT)n,Simple_repeat,Simple_repeat,1,41,0,103051573,103051612 -6 + chr11 103051652 103051856 chr11,103051652,103051856,-,MIRc,SINE,MIR,-11,219,2,103051641,103051857 +6 - chr11 103052138 103052258 chr11,103052138,103052258,-,L2c,LINE,L2,-1,3386,3259,103052137,103055516 +6 - chr11 103052285 103052399 chr11,103052285,103052399,-,L2c,LINE,L2,-2,3385,3260,103052283,103055658 +6 - chr11 103052405 103052482 chr11,103052405,103052482,-,L2c,LINE,L2,-18,3369,3291,103052387,103055772 +6 - chr11 103052974 103053076 chr11,103052974,103053076,+,Charlie15a,DNA,hAT-Charlie,99,209,-15,103052876,103053091 -6 + chr11 103053400 103053628 chr11,103053400,103053628,+,L1MA4,LINE,L1,6049,6292,-8,103047352,103053636 -6 + chr11 103053633 103053695 chr11,103053633,103053695,+,L1MA4,LINE,L1,6226,6292,-8,103047408,103053703 -6 + chr11 103053700 103053772 chr11,103053700,103053772,+,L1MA4,LINE,L1,6226,6297,-3,103047475,103053775 -6 + chr11 103053889 103053981 chr11,103053889,103053981,-,MIR,SINE,MIR,-58,210,115,103053831,103054095 +6 - chr11 103054559 103054654 chr11,103054559,103054654,+,L2c,LINE,L2,3291,3423,-3,103051269,103054657 -6 + chr11 103054772 103054806 chr11,103054772,103054806,+,(AATTTA)n,Simple_repeat,Simple_repeat,1,34,0,103054772,103054806 -6 + chr11 103054947 103055298 chr11,103054947,103055298,-,Tigger4b,DNA,TcMar-Tigger,0,361,1,103054947,103055298 +6 - chr11 103055702 103055799 chr11,103055702,103055935,+,L2-1_AMi,LINE,L2,316,543,-692,103055387,103056627 -1 + chr11 103675994 103676116 chr11,103675962,103676116,+,L2a,LINE,L2,2004,2175,-1244,103673959,103677360 -5 + chr11 103895224 103895245 chr11,103894616,103895245,+,L2a,LINE,L2,2207,2859,-560,103892410,103895805 -4 + chr11 103895246 103895271 chr11,103895246,103895541,-,MLT1I,LTR,ERVL-MaLR,0,411,109,103895246,103895649 +1 - chr11 104445868 104445984 chr11,104445628,104445984,+,L1ME3G,LINE,L1,13,414,-478,104445616,104446462 -5 + chr11 104512149 104512194 chr11,104511909,104512194,-,AluJr4,SINE,Alu,-16,296,6,104511893,104512199 +4 - chr11 104512194 104512233 chr11,104512194,104512312,-,L2c,LINE,L2,-263,3124,3021,104511931,104515332 +2 - chr11 104544699 104544786 chr11,104544456,104544846,+,L1PA7,LINE,L1,5551,5943,-211,104538906,104545057 -3 + chr11 104544876 104545138 chr11,104544856,104545138,-,L1PA12,LINE,L1,-6584,397,116,104538272,104545253 +4 - chr11 104545138 104545149 chr11,104545138,104545371,+,L1PA7,LINE,L1,5926,6154,0,104539213,104545371 -2 + chr11 104568530 104568680 chr11,104568489,104568680,-,MIRc,SINE,MIR,-46,222,26,104568443,104568705 +5 - chr11 105158039 105158090 chr11,105158039,105158346,-,MLT1J,LTR,ERVL-MaLR,-205,307,1,105157834,105158346 +2 - chr11 105160265 105160282 chr11,105160112,105160282,-,MLT1I,LTR,ERVL-MaLR,-130,281,111,105159982,105160392 +4 - chr11 105259642 105259658 chr11,105259370,105259658,-,MER44D,DNA,TcMar-Tigger,0,705,427,105259370,105260084 +4 - chr11 105259659 105259685 chr11,105259659,105259812,-,MER44D,DNA,TcMar-Tigger,-531,174,10,105259128,105259821 +2 - chr11 105531602 105531679 chr11,105531459,105531679,-,L3,LINE,CR1,-244,3855,3617,105531215,105535295 +4 - chr11 106086104 106086372 chr11,106086104,106086526,-,MLT1C,LTR,ERVL-MaLR,0,467,6,106086104,106086531 +2 - chr11 106101652 106101911 chr11,106101563,106101911,+,LTR33,LTR,ERVL,120,515,0,106101444,106101911 -4 + chr11 106132066 106132116 chr11,106131968,106132294,-,MER115,DNA,hAT-Tip100,-29,664,339,106131939,106132632 +1 - chr11 107313214 107314041 chr11,107313214,107314041,-,L2c,LINE,L2,-109,3278,2410,107313105,107316450 +6 - chr11 107314065 107314090 chr11,107314065,107314090,+,(AAAC)n,Simple_repeat,Simple_repeat,1,25,0,107314065,107314090 -6 + chr11 107314374 107314534 chr11,107314374,107314534,+,L1MC4,LINE,L1,60,225,-5990,107314315,107320524 -6 + chr11 107314701 107315602 chr11,107314701,107315602,+,L1MC4,LINE,L1,468,1443,-4772,107314234,107320374 -6 + chr11 107315602 107315910 chr11,107315602,107315910,-,AluY,SINE,Alu,-3,308,1,107315599,107315910 +6 - chr11 107315910 107316271 chr11,107315910,107316854,+,L1MC4,LINE,L1,1444,2452,-3763,107314467,107320617 -1 + chr11 108105245 108105293 chr11,108105245,108105293,+,(TTAATAT)n,Simple_repeat,Simple_repeat,1,49,0,108105245,108105293 -6 + chr11 108957718 108957887 chr11,108957672,108957887,-,MIRc,SINE,MIR,-9,259,37,108957663,108957923 -1 - chr11 108957906 108958054 chr11,108957906,108958054,-,MER5B,DNA,hAT-Charlie,0,178,29,108957906,108958082 -6 - chr11 108958083 108958273 chr11,108958083,108958273,-,L1MC4a,LINE,L1,0,7882,7692,108958083,108965964 -6 - chr11 108958363 108958406 chr11,108958363,108958406,-,MER5B,DNA,hAT-Charlie,-135,43,1,108958228,108958406 -6 - chr11 108959464 108959788 chr11,108959464,108959788,+,L2c,LINE,L2,2993,3387,0,108956472,108959788 +6 + chr11 109037743 109037891 chr11,109037600,109037891,+,L2c,LINE,L2,3098,3385,-2,109034503,109037893 -4 + chr11 109413445 109413556 chr11,109413445,109413800,+,ERV3-16A3_I-int,LTR,ERVL,687,1052,-4174,109412759,109417974 -2 + chr11 109415924 109416171 chr11,109415857,109416396,-,MLT1E2,LTR,ERVL-MaLR,-4,623,87,109415853,109416482 +3 - chr11 109512579 109512725 chr11,109512379,109512930,+,MLT2F,LTR,ERVL,1,601,-62,109512379,109512992 -3 + chr11 109583527 109583547 chr11,109583483,109583547,-,MLT1K,LTR,ERVL-MaLR,-32,563,498,109583451,109584044 +4 - chr11 109583869 109583907 chr11,109583869,109584053,-,L1ME4a,LINE,L1,-2559,218,70,109581310,109584122 +1 - chr11 109780982 109781036 chr11,109780913,109781161,+,MIR,SINE,MIR,6,261,-1,109780908,109781162 -3 + chr11 110381926 110381986 chr11,110381908,110382043,-,AluJr,SINE,Alu,-176,136,1,110381732,110382043 -5 - chr11 110406244 110406400 chr11,110404839,110406480,+,HERV9-int,LTR,ERV1,6788,8436,0,110398052,110406480 +5 + chr11 111089980 111090368 chr11,111089980,111090584,-,MLT1E2,LTR,ERVL-MaLR,0,627,63,111089980,111090646 +1 - chr11 111091932 111092042 chr11,111091682,111092042,+,L2b,LINE,L2,2998,3375,0,111088685,111092042 -5 + chr11 111092081 111092174 chr11,111092081,111092174,-,MLT1H,LTR,ERVL-MaLR,-16,553,465,111092065,111092638 +6 - chr11 111092174 111092311 chr11,111092174,111092452,-,MLT1H,LTR,ERVL-MaLR,-190,359,99,111091984,111092550 +2 - chr11 111097230 111097357 chr11,111097091,111097502,-,MER61B,LTR,ERV1,-1,426,1,111097090,111097502 +1 - chr11 111290953 111290999 chr11,111290953,111290999,+,(ACAT)n,Simple_repeat,Simple_repeat,1,46,0,111290953,111290999 -6 + chr11 111291337 111291427 chr11,111291337,111291427,+,L2b,LINE,L2,3295,3379,-8,111288043,111291435 -6 + chr11 111291909 111292073 chr11,111291909,111292073,+,AluJb,SINE,Alu,138,298,-14,111291772,111292087 -6 + chr11 111292290 111293381 chr11,111292290,111293381,+,L1PA5,LINE,L1,5065,6154,0,111287226,111293381 -6 + chr11 111294160 111294257 chr11,111294160,111294257,+,L3,LINE,CR1,3655,3755,-344,111290506,111294601 -6 + chr11 111294279 111294345 chr11,111294279,111294345,+,L2b,LINE,L2,3308,3375,0,111290972,111294345 -6 + chr11 111294532 111294586 chr11,111294532,111294586,+,L3,LINE,CR1,3908,3962,-137,111290625,111294723 -6 + chr11 111295119 111295377 chr11,111295119,111295377,+,MER112,DNA,hAT-Charlie,3,256,-5,111295117,111295382 -6 + chr11 111295400 111295424 chr11,111295400,111295424,+,MIR,SINE,MIR,6,26,-236,111295395,111295660 -6 + chr11 111295424 111295716 chr11,111295424,111295716,+,AluSc,SINE,Alu,1,292,-17,111295424,111295733 -6 + chr11 111295716 111295856 chr11,111295716,111295856,+,MIRb,SINE,MIR,27,160,-102,111295690,111295958 -6 + chr11 111296444 111296507 chr11,111296444,111296507,+,Alu,SINE,Alu,245,307,-4,111296200,111296511 -6 + chr11 111296607 111296687 chr11,111296607,111296687,+,GA-rich,Low_complexity,Low_complexity,1,81,0,111296607,111296687 -6 + chr11 111299728 111299779 chr11,111299728,111299779,+,(GGAGCGA)n,Simple_repeat,Simple_repeat,1,55,0,111299728,111299779 -6 + chr11 111415919 111416040 chr11,111415758,111416063,+,AluJo,SINE,Alu,1,302,-10,111415758,111416073 -3 + chr11 111416632 111416855 chr11,111416632,111416855,+,MIRb,SINE,MIR,5,258,-10,111416628,111416865 -6 + chr11 111417297 111417332 chr11,111417297,111417332,+,(CTTCCT)n,Simple_repeat,Simple_repeat,1,35,0,111417297,111417332 -6 + chr11 111514717 111514752 chr11,111514717,111514752,+,(AGGGGC)n,Simple_repeat,Simple_repeat,1,37,0,111514717,111514752 -6 + chr11 111526652 111526755 chr11,111526221,111526763,-,L2b,LINE,L2,-550,2869,2331,111525671,111529093 +1 - chr11 111768680 111768828 chr11,111768680,111768828,-,AluJr4,SINE,Alu,-31,281,121,111768649,111768948 +6 - chr11 111768828 111768868 chr11,111768828,111768868,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,111768828,111768868 -5 + chr11 111768868 111768901 chr11,111768868,111768901,-,AluJr4,SINE,Alu,-193,119,87,111768675,111768987 +6 - chr11 111769080 111769139 chr11,111769080,111769329,+,AluJb,SINE,Alu,58,301,-11,111769023,111769340 -2 + chr11 111769359 111769452 chr11,111769336,111769630,+,AluJb,SINE,Alu,1,296,-16,111769336,111769646 -3 + chr11 111771307 111771392 chr11,111771149,111771395,+,AluSx,SINE,Alu,1,246,-66,111771149,111771461 -3 + chr11 111817214 111817358 chr11,111817182,111817358,-,L2,LINE,L2,-559,2860,2692,111816623,111820049 +5 - chr11 111817364 111817443 chr11,111817364,111817443,-,AluJb,SINE,Alu,-18,294,217,111817346,111817659 +6 - chr11 111817443 111817522 chr11,111817443,111817522,+,AluSz6,SINE,Alu,225,303,-9,111817219,111817531 -6 + chr11 111817522 111817539 chr11,111817522,111817705,-,AluJb,SINE,Alu,-83,229,49,111817439,111817753 +2 - chr11 112016022 112016108 chr11,112015800,112016108,-,AluSg7,SINE,Alu,-7,302,2,112015793,112016109 -2 - chr11 112166076 112166157 chr11,112165909,112166157,-,Charlie18a,DNA,hAT-Charlie,-1,341,101,112165908,112166257 +4 - chr11 112260930 112261396 chr11,112260930,112261449,+,L1M4,LINE,L1,554,1045,-6472,112260377,112267921 +5 + chr11 112290201 112290274 chr11,112290193,112290274,+,G-rich,Low_complexity,Low_complexity,1,81,0,112290193,112290274 +1 + chr11 112291721 112292294 chr11,112291721,112292294,-,L1M6,LINE,L1,-4304,2192,1591,112287417,112293884 -5 - chr11 112292294 112292359 chr11,112292294,112292359,+,(TCCT)n,Simple_repeat,Simple_repeat,1,65,0,112292294,112292359 +6 + chr11 112292359 112292651 chr11,112292359,112292651,-,L1M6,LINE,L1,-4906,1590,1302,112287453,112293952 -1 - chr11 112292651 112292779 chr11,112292651,112293361,-,Kanga1c,DNA,TcMar-Tc2,0,729,4,112292651,112293364 -5 - chr11 112293727 112293945 chr11,112293533,112293945,+,MLT1J1,LTR,ERVL-MaLR,30,444,0,112293504,112293945 +2 + chr11 112360277 112360408 chr11,112360277,112360408,+,MIR,SINE,MIR,37,176,-86,112360241,112360494 +6 + chr11 112360504 112360604 chr11,112360504,112360604,+,MER5A,DNA,hAT-Charlie,66,163,-26,112360439,112360630 +6 + chr11 112361268 112361610 chr11,112361268,112361610,-,LTR33A,LTR,ERVL,0,520,180,112361268,112361789 -6 - chr11 112361780 112361794 chr11,112361780,112361794,-,L2a,LINE,L2,-8,3418,3405,112361772,112365198 -6 - chr11 112361794 112362082 chr11,112361794,112362082,-,AluSc,SINE,Alu,-21,288,1,112361773,112362082 -6 - chr11 112362082 112362507 chr11,112362082,112362507,-,L2a,LINE,L2,-22,3404,2931,112362060,112365437 -6 - chr11 112484345 112484429 chr11,112483970,112484429,+,LTR40b,LTR,ERVL,1,460,-2,112483970,112484431 +1 + chr11 112487759 112487836 chr11,112487309,112487979,-,L2b,LINE,L2,-35,3340,2658,112487274,112490636 -5 - chr11 112534220 112534316 chr11,112534209,112534316,-,MIRc,SINE,MIR,-40,228,115,112534169,112534430 +5 - chr11 112534873 112534925 chr11,112534873,112534925,+,MER91A,DNA,hAT-Tip100,140,195,-1,112534734,112534926 -6 + chr11 112535362 112535586 chr11,112535362,112535586,+,(GT)n,Simple_repeat,Simple_repeat,1,227,0,112535362,112535586 -6 + chr11 112535705 112535852 chr11,112535705,112536018,+,LTR33,LTR,ERVL,8,337,-178,112535698,112536196 -2 + chr11 112541293 112541525 chr11,112541112,112541525,+,MLT1J2,LTR,ERVL-MaLR,39,448,0,112541074,112541525 +2 + chr11 112541614 112541916 chr11,112541614,112541966,+,MER83C,LTR,ERV1,5,362,-11,112541610,112541977 +5 + chr11 112548247 112548357 chr11,112547900,112548823,+,L2,LINE,L2,807,1784,-1635,112547094,112550458 -3 + chr11 112621687 112621729 chr11,112621687,112621915,+,MER96B,DNA,hAT-Tip100,1,236,-181,112621687,112622096 +5 + chr11 112787482 112787722 chr11,112787482,112787755,-,MLT1K,LTR,ERVL-MaLR,-45,565,283,112787437,112788037 -4 - chr11 112795442 112795559 chr11,112795351,112795559,+,MIRc,SINE,MIR,61,266,-2,112795291,112795561 +2 + chr11 112795823 112795854 chr11,112795823,112795885,-,MIR3,SINE,MIR,-62,146,84,112795761,112795968 -5 - chr11 112959314 112959348 chr11,112959314,112959348,+,(AGAAGTC)n,Simple_repeat,Simple_repeat,1,36,0,112959314,112959348 -6 + chr11 112959427 112959635 chr11,112959427,112959635,+,L1M4,LINE,L1,5679,5899,-225,112953749,112959860 -6 + chr11 112959692 112959779 chr11,112959692,112959779,+,HAL1b,LINE,L1,2288,2378,-43,112957405,112959822 -6 + chr11 112959978 112960259 chr11,112959978,112960259,+,AluSg,SINE,Alu,1,283,-27,112959978,112960286 -6 + chr11 112960259 112960299 chr11,112960259,112960299,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,40,0,112960259,112960299 -6 + chr11 112963450 112963460 chr11,112963450,112963512,+,G-rich,Low_complexity,Low_complexity,1,64,0,112963450,112963512 -1 + chr11 113270353 113270385 chr11,113270353,113270385,+,(GGACAA)n,Simple_repeat,Simple_repeat,1,32,0,113270353,113270385 -6 + chr11 113278632 113278743 chr11,113278632,113278868,+,MIRb,SINE,MIR,22,260,-8,113278611,113278876 -2 + chr11 113279552 113279649 chr11,113279552,113279682,-,L2a,LINE,L2,-4,3422,3272,113279548,113282953 +2 - chr11 113280491 113280632 chr11,113279964,113280919,-,MER63C,DNA,hAT-Blackjack,0,930,1,113279964,113280919 +3 - chr11 113283857 113283990 chr11,113283509,113284751,+,L2,LINE,L2,335,1668,-1751,113283175,113286502 -1 + chr11 113368802 113368882 chr11,113368802,113368882,-,MADE1,DNA,TcMar-Mariner,0,80,1,113368802,113368882 -6 - chr11 113411674 113411733 chr11,113411674,113411832,+,MIRc,SINE,MIR,31,204,-64,113411644,113411896 +4 + chr11 113412105 113412117 chr11,113412105,113412247,-,MIRc,SINE,MIR,-1,267,85,113412104,113412331 -5 - chr11 113770393 113770410 chr11,113770391,113770410,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,113770391,113770410 -5 + chr11 113770536 113770556 chr11,113770536,113770847,+,AluSx1,SINE,Alu,3,308,-4,113770534,113770851 -2 + chr11 113771669 113771691 chr11,113771669,113771839,-,AluSx,SINE,Alu,-14,298,130,113771655,113771968 +1 - chr11 113818142 113818207 chr11,113818142,113818443,-,AluY,SINE,Alu,-3,308,2,113818139,113818444 -4 - chr11 113822435 113822457 chr11,113822169,113822457,+,AluSg,SINE,Alu,1,288,-22,113822169,113822479 +2 + chr11 114210665 114210705 chr11,114210665,114210705,-,MamRTE1,LINE,RTE-BovB,-1274,2538,2502,114209391,114213206 +6 - chr11 114210915 114210952 chr11,114210915,114211209,-,AluSx,SINE,Alu,-9,303,13,114210906,114211221 +2 - chr11 114356522 114356571 chr11,114356300,114356571,+,AluJr,SINE,Alu,30,299,-13,114356271,114356584 -1 + chr11 114360635 114361298 chr11,114360542,114361298,+,L1M5,LINE,L1,3679,4471,-1675,114356864,114362973 -5 + chr11 114361298 114361604 chr11,114361298,114361604,+,AluJb,SINE,Alu,1,303,-9,114361298,114361613 -6 + chr11 114361604 114361743 chr11,114361604,114361743,+,L1M5,LINE,L1,4472,4607,-1539,114357133,114363282 -6 + chr11 114361791 114361965 chr11,114361791,114361965,-,AluSc8,SINE,Alu,-15,296,122,114361776,114362086 +6 - chr11 114361965 114362064 chr11,114361965,114362064,+,L1M5,LINE,L1,4846,4944,-1202,114357120,114363266 -6 + chr11 114362107 114362232 chr11,114362107,114362232,+,L1M5,LINE,L1,4930,5053,-1093,114357178,114363325 -6 + chr11 114362238 114362502 chr11,114362238,114362502,+,MER49,LTR,ERV1,1,288,-635,114362238,114363137 -6 + chr11 114362525 114362558 chr11,114362525,114362558,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,114362525,114362558 -6 + chr11 114362592 114362636 chr11,114362592,114362636,+,MER49,LTR,ERV1,240,283,-617,114362353,114363253 -6 + chr11 114362654 114362974 chr11,114362654,114362974,+,MER4D,LTR,ERV1,568,886,-17,114362087,114362991 -6 + chr11 114362992 114363356 chr11,114362992,114363356,+,MER21C,LTR,ERVL,5,480,-458,114362988,114363814 -6 + chr11 114378740 114378766 chr11,114378585,114378766,+,MIR1_Amn,SINE,MIR,8,198,-32,114378578,114378798 -4 + chr11 114379993 114380043 chr11,114379902,114380043,+,MamTip2,DNA,hAT-Tip100,75,212,-93,114379828,114380136 -4 + chr11 115333577 115333597 chr11,115333456,115333597,-,Charlie4z,DNA,hAT-Charlie,-1,166,27,115333455,115333623 -1 - chr11 115396756 115396895 chr11,115396628,115396895,-,UCON78,DNA,DNA,-168,275,1,115396460,115396895 -1 - chr11 115396895 115396943 chr11,115396895,115396943,-,Eulor9C,DNA,DNA,-219,51,4,115396676,115396946 -6 - chr11 115396943 115397109 chr11,115396943,115397109,+,UCON78,DNA,DNA,188,390,-53,115396756,115397162 +6 + chr11 115397503 115397625 chr11,115397503,115397625,+,MIR3,SINE,MIR,15,145,-63,115397489,115397688 +5 + chr11 115532920 115532953 chr11,115532866,115533081,-,MLT1J2,LTR,ERVL-MaLR,-36,412,184,115532830,115533264 +1 - chr11 115582309 115582509 chr11,115582309,115582529,-,MER50,LTR,ERV1,-23,711,486,115582286,115583014 -4 - chr11 115600221 115600339 chr11,115599998,115600389,+,MSTA,LTR,ERVL-MaLR,1,428,0,115599998,115600389 +5 + chr11 115628570 115628687 chr11,115628534,115628806,-,AluSx,SINE,Alu,-2,310,39,115628532,115628844 -3 - chr11 115638565 115638619 chr11,115638565,115638619,-,L2c,LINE,L2,-219,3168,3115,115638346,115641733 -6 - chr11 115638996 115639187 chr11,115638996,115639187,+,L3b,LINE,CR1,4946,5135,-97,115634051,115639284 +6 + chr11 115639775 115639845 chr11,115639775,115639845,-,UCON88,Unknown,Unknown,-40,72,1,115639735,115639845 -6 - chr11 115639959 115640187 chr11,115639959,115640187,+,MIRb,SINE,MIR,18,262,-6,115639942,115640193 +6 + chr11 115640848 115641055 chr11,115640848,115641055,-,MIR,SINE,MIR,-21,241,13,115640827,115641067 -6 - chr11 115641121 115641204 chr11,115641121,115641204,+,L3b,LINE,CR1,4968,5051,-181,115636154,115641385 +6 + chr11 115641883 115642017 chr11,115641883,115642017,-,L2b,LINE,L2,-1,3374,3238,115641882,115645254 -6 - chr11 115643209 115643401 chr11,115643209,115643401,+,Plat_L3,LINE,CR1,3362,3556,-30,115639848,115643431 +6 + chr11 115644839 115644960 chr11,115644839,115644960,-,L2b,LINE,L2,-22,3353,3238,115644817,115648197 -6 - chr11 115646629 115646962 chr11,115646629,115646975,-,Tigger1a_Art,DNA,TcMar-Tigger,-4,493,1,115646625,115646975 -5 - chr11 115660380 115660404 chr11,115660380,115660404,+,(ATTA)n,Simple_repeat,Simple_repeat,1,24,0,115660380,115660404 +6 + chr11 115660470 115660496 chr11,115660470,115660496,+,(CCCTC)n,Simple_repeat,Simple_repeat,1,26,0,115660470,115660496 +6 + chr11 115661081 115661200 chr11,115661081,115661200,+,AluJb,SINE,Alu,1,120,-192,115661081,115661392 +6 + chr11 115661200 115661231 chr11,115661200,115661231,+,(AAAC)n,Simple_repeat,Simple_repeat,1,31,0,115661200,115661231 +6 + chr11 115661231 115661407 chr11,115661231,115661407,+,AluJb,SINE,Alu,122,309,-3,115661110,115661410 +6 + chr11 115731963 115732054 chr11,115731963,115732054,-,L2a,LINE,L2,-18,3408,3316,115731945,115735369 +6 - chr11 115732054 115732166 chr11,115732054,115732166,+,MER94,DNA,hAT-Blackjack,1,134,0,115732054,115732166 -6 + chr11 115732166 115732288 chr11,115732166,115732288,-,L2a,LINE,L2,-111,3315,3178,115732055,115735465 +6 - chr11 115732402 115732427 chr11,115732402,115732427,+,(TC)n,Simple_repeat,Simple_repeat,1,25,0,115732402,115732427 -6 + chr11 115732427 115732725 chr11,115732427,115732725,-,AluJb,SINE,Alu,-11,301,2,115732416,115732726 +6 - chr11 115732725 115732739 chr11,115732725,115732739,+,(TC)n,Simple_repeat,Simple_repeat,1,15,0,115732725,115732739 -6 + chr11 115732865 115732969 chr11,115732865,115732969,+,MIRb,SINE,MIR,44,127,-141,115732822,115733110 -6 + chr11 115732969 115733128 chr11,115732969,115733128,-,AluJo,SINE,Alu,-13,299,141,115732956,115733268 +6 - chr11 115733128 115733273 chr11,115733128,115733273,+,MIRb,SINE,MIR,128,268,0,115733001,115733273 -6 + chr11 115733937 115734317 chr11,115733937,115734317,-,MLT1B,LTR,ERVL-MaLR,0,390,1,115733937,115734317 +6 - chr11 115754718 115755017 chr11,115754718,115755017,+,AluSc,SINE,Alu,1,299,-10,115754718,115755027 -6 + chr11 115755094 115755131 chr11,115755094,115755131,+,(TGTATG)n,Simple_repeat,Simple_repeat,1,39,0,115755094,115755131 -6 + chr11 115755309 115755505 chr11,115755309,115755505,-,MIR,SINE,MIR,-34,228,23,115755275,115755527 +6 - chr11 115755921 115755950 chr11,115755921,115755950,+,(ATT)n,Simple_repeat,Simple_repeat,1,29,0,115755921,115755950 -6 + chr11 115755950 115756269 chr11,115755950,115756269,-,AluJr,SINE,Alu,-28,284,1,115755922,115756269 +6 - chr11 115757451 115757697 chr11,115757394,115757697,+,AluSg,SINE,Alu,1,310,0,115757394,115757697 -5 + chr11 115760071 115760118 chr11,115760071,115760118,+,(CCCGCGC)n,Simple_repeat,Simple_repeat,1,48,0,115760071,115760118 -6 + chr11 115842736 115842942 chr11,115842602,115842942,-,ERVL-B4-int,LTR,ERVL,-350,5317,4968,115842252,115847909 -2 - chr11 115842969 115843079 chr11,115842969,115843079,-,ERVL-B4-int,LTR,ERVL,-673,4981,4872,115842296,115847950 -6 - chr11 115843089 115843146 chr11,115843089,115843155,+,MIR,SINE,MIR,3,72,-190,115843087,115843345 +5 + chr11 116496899 116496909 chr11,116496023,116496909,-,L1MB2,LINE,L1,0,6171,5288,116496023,116502196 +5 - chr11 116497124 116497174 chr11,116497124,116497174,-,MamTip3,DNA,hAT-Tip100,-195,305,256,116496929,116497429 +6 - chr11 116497665 116497730 chr11,116497665,116497908,+,L1ME4a,LINE,L1,5851,6121,-3,116491815,116497911 -2 + chr11 116652898 116653020 chr11,116652871,116653020,-,MIRb,SINE,MIR,-43,165,15,116652828,116653034 -2 - chr11 116655035 116655189 chr11,116654916,116655237,+,MLT1I,LTR,ERVL-MaLR,64,411,0,116654853,116655237 +5 + chr11 116658171 116658252 chr11,116658171,116658537,-,MLT1J2,LTR,ERVL-MaLR,-8,440,39,116658163,116658575 -5 - chr11 116773389 116773511 chr11,116773319,116773524,+,MIR,SINE,MIR,20,262,0,116773300,116773524 +1 + chr11 116773910 116773990 chr11,116773836,116773990,-,MIRb,SINE,MIR,-49,219,54,116773787,116774043 -2 - chr11 116774080 116774205 chr11,116774080,116774352,-,L1MA9,LINE,L1,0,6312,6017,116774080,116780368 -5 - chr11 116775178 116775333 chr11,116775178,116775478,+,AluSg4,SINE,Alu,1,303,-7,116775178,116775485 -2 + chr11 116775503 116775657 chr11,116775478,116775657,+,AluSx3,SINE,Alu,133,311,0,116775346,116775657 -4 + chr11 116775682 116775747 chr11,116775682,116775747,+,MIRb,SINE,MIR,109,175,-93,116775574,116775840 -6 + chr11 116775739 116775782 chr11,116775739,116775782,-,MIR1_Amn,SINE,MIR,-74,156,112,116775665,116775893 +6 - chr11 116813204 116813448 chr11,116813085,116813500,-,MLT1F,LTR,ERVL-MaLR,0,548,88,116813085,116813587 +5 - chr11 116855290 116855406 chr11,116855161,116855406,+,L2b,LINE,L2,2934,3198,-177,116852228,116855583 +2 + chr11 116887122 116887260 chr11,116887122,116887260,+,FLAM_C,SINE,Alu,1,137,-6,116887122,116887266 -6 + chr11 116887334 116887491 chr11,116887334,116887630,+,AluSz6,SINE,Alu,1,302,-10,116887334,116887640 -2 + chr11 116889442 116889580 chr11,116889293,116889580,+,AluJr4,SINE,Alu,13,296,-16,116889281,116889596 -4 + chr11 116889870 116889918 chr11,116889613,116889918,+,AluJo,SINE,Alu,1,302,-10,116889613,116889928 -4 + chr11 116890041 116890177 chr11,116890041,116890177,-,L2a,LINE,L2,0,3426,3282,116890041,116893458 +6 - chr11 116890265 116890457 chr11,116890265,116890457,-,L2a,LINE,L2,-380,3039,2847,116889885,116893303 +6 - chr11 116890482 116890721 chr11,116890482,116890894,-,L2c,LINE,L2,-17,3370,2910,116890465,116893803 +1 - chr11 117107947 117108090 chr11,117107946,117108090,-,MIRb,SINE,MIR,-109,159,3,117107837,117108092 -2 - chr11 117108097 117108170 chr11,117108097,117108217,+,Charlie14a,DNA,hAT-Charlie,57,193,-973,117108041,117109190 +5 + chr11 117207581 117207699 chr11,117207581,117207699,+,MIRc,SINE,MIR,89,223,-45,117207493,117207744 +6 + chr11 117208234 117208337 chr11,117208234,117208337,+,MIRb,SINE,MIR,10,128,-140,117208225,117208477 +6 + chr11 117208337 117208649 chr11,117208337,117208649,-,AluJb,SINE,Alu,0,312,1,117208337,117208649 -6 - chr11 117208649 117208746 chr11,117208649,117208746,+,MIRb,SINE,MIR,129,229,-39,117208521,117208785 +6 + chr11 117209306 117209481 chr11,117209306,117209481,-,L2b,LINE,L2,0,3426,3246,117209306,117212726 -6 - chr11 117209498 117209585 chr11,117209498,117209585,-,L2b,LINE,L2,-255,3120,3036,117209243,117212620 -6 - chr11 117209640 117209689 chr11,117209640,117209689,+,L1MD2,LINE,L1,5848,5898,-461,117203793,117210150 +6 + chr11 117209696 117209866 chr11,117209696,117209866,+,AluJb,SINE,Alu,135,305,-7,117209562,117209873 +6 + chr11 117209882 117210285 chr11,117209882,117210285,+,L1MD2,LINE,L1,5914,6343,-16,117203969,117210301 +6 + chr11 117292211 117292333 chr11,117292171,117292473,-,AluSx1,SINE,Alu,0,312,1,117292171,117292473 -3 - chr11 117292798 117292867 chr11,117292778,117292867,-,MIR3,SINE,MIR,-102,106,30,117292676,117292896 -1 - chr11 117297152 117297328 chr11,117297152,117297337,-,LTR49,LTR,ERV1,0,595,392,117297152,117297728 +1 - chr11 117316473 117316508 chr11,117316473,117316752,-,L2b,LINE,L2,-26,3349,3062,117316447,117319813 +2 - chr11 117323870 117323977 chr11,117323200,117323977,-,L1MA6,LINE,L1,-247,6053,5276,117322953,117329252 +4 - chr11 117611178 117611561 chr11,117611178,117611561,+,L2b,LINE,L2,3028,3374,-1,117608151,117611562 -6 + chr11 117611665 117611987 chr11,117611665,117611987,+,L2c,LINE,L2,2938,3283,-104,117608728,117612091 -6 + chr11 117611987 117612017 chr11,117611987,117612036,+,(AC)n,Simple_repeat,Simple_repeat,1,49,0,117611987,117612036 -1 + chr11 117833970 117833994 chr11,117833970,117833994,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,117833970,117833994 +6 + chr11 117836269 117836502 chr11,117836254,117836523,-,AluJb,SINE,Alu,-17,295,2,117836237,117836524 -3 - chr11 117838640 117838808 chr11,117838640,117838808,+,MIRc,SINE,MIR,9,198,-70,117838632,117838878 +6 + chr11 118031821 118031855 chr11,118031646,118031855,+,L1MC4,LINE,L1,7238,7449,-593,118024409,118032448 -4 + chr11 118031855 118031969 chr11,118031855,118032109,+,AluJr,SINE,Alu,1,260,-52,118031855,118032161 -2 + chr11 118264893 118265073 chr11,118264893,118265073,-,MIRc,SINE,MIR,-34,234,18,118264859,118265090 -6 - chr11 118265482 118265579 chr11,118265482,118265579,+,A-rich,Low_complexity,Low_complexity,1,97,0,118265482,118265579 +6 + chr11 118433127 118433433 chr11,118433127,118433433,-,AluSx1,SINE,Alu,-6,306,1,118433121,118433433 +6 - chr11 118433433 118433478 chr11,118433433,118433478,+,L1ME4b,LINE,L1,845,890,-2,118432589,118433480 -6 + chr11 118433557 118433840 chr11,118433557,118433840,-,AluYe5,SINE,Alu,-7,303,19,118433550,118433858 +6 - chr11 118433860 118434054 chr11,118433860,118434054,+,MIR,SINE,MIR,8,260,-2,118433853,118434056 -6 + chr11 118434449 118434493 chr11,118434449,118434493,+,(AG)n,Simple_repeat,Simple_repeat,1,44,0,118434449,118434493 -6 + chr11 118519385 118519509 chr11,118519380,118519509,-,L1ME4c,LINE,L1,-194,636,521,118519186,118520029 +5 - chr11 118530504 118530520 chr11,118530368,118530520,+,MIRb,SINE,MIR,8,186,-82,118530361,118530602 -4 + chr11 118636620 118636749 chr11,118636522,118636749,-,MIRb,SINE,MIR,-32,236,9,118636490,118636757 -1 - chr11 118637094 118637310 chr11,118637094,118637310,+,MIRb,SINE,MIR,27,262,-6,118637068,118637316 +6 + chr11 118637337 118637645 chr11,118637337,118637645,-,AluSq2,SINE,Alu,-9,304,1,118637328,118637645 -6 - chr11 118637828 118637862 chr11,118637828,118638367,-,L2c,LINE,L2,-1,3386,2794,118637827,118641160 -5 - chr11 118637953 118638097 chr11,118637828,118638367,-,L2c,LINE,L2,-1,3386,2794,118637827,118641160 -5 - chr11 118704607 118704711 chr11,118704495,118704711,-,L1M5,LINE,L1,-305,5819,5616,118704190,118710326 -1 - chr11 118708382 118708420 chr11,118708096,118708420,-,ERVL-E-int,LTR,ERVL,-568,5099,4760,118707528,118713179 -2 - chr11 118708420 118708523 chr11,118708420,118708884,+,LTR19A,LTR,ERV1,1,486,0,118708420,118708884 +4 + chr11 118792758 118792832 chr11,118792758,118792832,+,MER89,LTR,ERV1,1,84,-475,118792758,118793307 +6 + chr11 118792810 118793137 chr11,118792810,118793159,+,MER89,LTR,ERV1,197,559,0,118792614,118793159 +5 + chr11 118994891 118994948 chr11,118994891,118994948,+,FLAM_C,SINE,Alu,3,58,-75,118994889,118995023 -6 + chr11 118994950 118994970 chr11,118994950,118995228,+,AluSx,SINE,Alu,17,296,-16,118994934,118995244 -2 + chr11 118996555 118996635 chr11,118996555,118996635,-,MER5A,DNA,hAT-Charlie,0,189,115,118996555,118996749 +1 - chr11 118996635 118996933 chr11,118996635,118996933,-,AluSx,SINE,Alu,-14,298,1,118996621,118996933 +6 - chr11 118996933 118997058 chr11,118996933,118997058,-,MER5A,DNA,hAT-Charlie,-75,114,1,118996858,118997058 +6 - chr11 118997728 118997871 chr11,118997660,118997871,+,MIR,SINE,MIR,42,251,-11,118997619,118997882 -4 + chr11 119003742 119003849 chr11,119003611,119003918,-,AluSx,SINE,Alu,0,312,1,119003611,119003918 +5 - chr11 119004479 119004545 chr11,119004253,119004545,-,AluSx4,SINE,Alu,-18,292,1,119004235,119004545 +4 - chr11 119004661 119004773 chr11,119004661,119004773,+,AluJb,SINE,Alu,182,294,-18,119004480,119004791 -6 + chr11 119004785 119004893 chr11,119004785,119005082,+,AluJb,SINE,Alu,9,303,-9,119004777,119005091 -1 + chr11 119044361 119044390 chr11,119044361,119044390,+,A-rich,Low_complexity,Low_complexity,1,29,0,119044361,119044390 +6 + chr11 119065263 119065328 chr11,119065191,119065328,+,MIRc,SINE,MIR,108,267,-1,119065084,119065329 -5 + chr11 119065365 119065452 chr11,119065365,119065452,+,L2c,LINE,L2,3307,3386,-1,119062059,119065453 -6 + chr11 119067374 119067385 chr11,119067272,119067385,-,L2c,LINE,L2,-3,3384,3270,119067269,119070654 +5 - chr11 119067413 119067477 chr11,119067413,119067477,-,MIRc,SINE,MIR,-34,234,171,119067379,119067647 +6 - chr11 119394981 119395154 chr11,119394672,119395304,-,L1M1,LINE,L1,-6928,637,17,119387744,119395320 -3 - chr11 119395542 119395663 chr11,119395511,119395822,-,AluSz6,SINE,Alu,-3,309,2,119395508,119395823 -3 - chr11 119409501 119409704 chr11,119409403,119409704,+,L2a,LINE,L2,1634,2002,-1417,119407770,119411121 +2 + chr11 119409704 119409762 chr11,119409704,119410181,-,MLT1H1,LTR,ERVL-MaLR,0,555,67,119409704,119410247 -5 - chr11 119469809 119469919 chr11,119469809,119469919,-,L2b,LINE,L2,-24,3351,3240,119469785,119473158 -2 - chr11 119475649 119475708 chr11,119475649,119475840,-,MER3,DNA,hAT-Charlie,-19,190,3,119475630,119475842 -5 - chr11 119498977 119499052 chr11,119498977,119499052,-,L3b,LINE,CR1,-135,5097,5015,119498842,119504066 -6 - chr11 119500011 119500082 chr11,119500011,119500082,-,MIRb,SINE,MIR,0,268,199,119500011,119500280 -6 - chr11 119500083 119500253 chr11,119500083,119500253,+,AluJr,SINE,Alu,135,299,-13,119499949,119500266 +6 + chr11 119500283 119500317 chr11,119500283,119500317,-,MIRc,SINE,MIR,-121,147,114,119500162,119500430 -6 - chr11 119500317 119500595 chr11,119500317,119500674,+,THE1B,LTR,ERVL-MaLR,1,364,0,119500317,119500674 +5 + chr11 119509114 119509225 chr11,119509070,119509345,+,AluJo,SINE,Alu,1,287,-25,119509070,119509370 +3 + chr11 119510309 119510399 chr11,119509840,119510399,-,MLT1N2,LTR,ERVL-MaLR,-10,552,1,119509830,119510399 -2 - chr11 119510399 119510480 chr11,119510399,119510515,+,L2a,LINE,L2,3305,3426,0,119507095,119510515 +4 + chr11 119521904 119522014 chr11,119521904,119522014,-,MamRTE1,LINE,RTE-BovB,-20,3792,3681,119521884,119525694 -6 - chr11 119522689 119522718 chr11,119522689,119522718,+,(TGCTC)n,Simple_repeat,Simple_repeat,1,29,0,119522689,119522718 +6 + chr11 119526415 119526664 chr11,119526415,119526692,+,AluSq2,SINE,Alu,30,311,-2,119526386,119526694 +5 + chr11 119636925 119637028 chr11,119636712,119637107,+,MSTD,LTR,ERVL-MaLR,1,396,0,119636712,119637107 +3 + chr11 119639530 119639710 chr11,119639530,119639710,+,MIR,SINE,MIR,85,262,-6,119639446,119639716 +6 + chr11 119641010 119641061 chr11,119641010,119641061,+,(CACT)n,Simple_repeat,Simple_repeat,1,52,0,119641010,119641061 +6 + chr11 119641222 119641328 chr11,119641222,119641328,-,AluJb,SINE,Alu,-204,108,2,119641018,119641329 -6 - chr11 119641329 119641400 chr11,119641329,119641400,+,L2b,LINE,L2,2791,2861,-558,119638539,119641958 +6 + chr11 119641479 119641711 chr11,119641479,119641711,+,L2b,LINE,L2,2975,3229,-146,119638505,119641857 +6 + chr11 119641711 119642027 chr11,119641711,119642027,-,AluY,SINE,Alu,-1,310,2,119641710,119642028 -6 - chr11 119642027 119642137 chr11,119642027,119642137,+,L2b,LINE,L2,3230,3374,-1,119638798,119642138 +6 + chr11 119642634 119642981 chr11,119642634,119642981,-,MER2,DNA,TcMar-Tigger,0,345,1,119642634,119642981 -6 - chr11 119654053 119654224 chr11,119654053,119654246,+,L3,LINE,CR1,3259,3462,-637,119650795,119654883 +4 + chr11 119659019 119659074 chr11,119658996,119659074,+,L2c,LINE,L2,3060,3139,-248,119655937,119659322 +2 + chr11 119712892 119712934 chr11,119712868,119712934,+,L2a,LINE,L2,3314,3420,-6,119709555,119712940 +2 + chr11 119729596 119729745 chr11,119729596,119729745,-,MIR3,SINE,MIR,-24,184,30,119729572,119729774 -6 - chr11 119987954 119988227 chr11,119987889,119988471,-,LTR26C,LTR,ERV1,0,539,1,119987889,119988471 +5 - chr11 119988766 119988901 chr11,119988766,119988943,+,MIRb,SINE,MIR,5,212,-50,119988762,119988993 -1 + chr11 119994888 119994993 chr11,119994793,119994993,+,MIRb,SINE,MIR,44,247,-21,119994750,119995014 -4 + chr11 120008604 120008827 chr11,120008514,120008827,+,L2c,LINE,L2,3070,3373,-2,120005445,120008829 -5 + chr11 120169771 120169889 chr11,120169750,120169889,-,MIR,SINE,MIR,-68,194,53,120169682,120169941 -2 - chr11 120170584 120170753 chr11,120170584,120170753,+,MIR,SINE,MIR,11,184,-78,120170574,120170831 +6 + chr11 120171218 120171357 chr11,120171218,120171357,+,MIRb,SINE,MIR,9,150,-118,120171210,120171475 +6 + chr11 120171360 120171666 chr11,120171360,120171666,+,AluJr,SINE,Alu,2,293,-19,120171359,120171685 +6 + chr11 120249759 120249956 chr11,120249733,120249956,-,MIRb,SINE,MIR,-10,252,16,120249723,120249971 +5 - chr11 120249945 120250063 chr11,120249945,120250063,+,MIR3,SINE,MIR,52,171,-37,120249894,120250100 -6 + chr11 120250301 120250393 chr11,120250301,120250393,-,L2c,LINE,L2,-12,3375,3274,120250289,120253666 +6 - chr11 120253584 120253609 chr11,120253558,120253609,-,Charlie10,DNA,hAT-Charlie,-2713,109,59,120250845,120253667 +4 - chr11 120256012 120256116 chr11,120255949,120256116,+,MIR3,SINE,MIR,29,205,-3,120255921,120256119 -4 + chr11 120256227 120256394 chr11,120256227,120256394,+,MIR,SINE,MIR,86,262,0,120256142,120256394 -6 + chr11 120256863 120256993 chr11,120256863,120257116,+,MIRb,SINE,MIR,5,260,-8,120256859,120257124 -2 + chr11 120259282 120259326 chr11,120259282,120259326,-,MIR3,SINE,MIR,-12,196,153,120259270,120259478 +6 - chr11 120261289 120261319 chr11,120261255,120261377,+,MIRc,SINE,MIR,78,195,-35,120261178,120261412 -3 + chr11 120265866 120265932 chr11,120265809,120266959,+,L2a,LINE,L2,2089,3426,0,120263721,120266959 -1 + chr11 120868592 120868887 chr11,120868592,120868887,-,AluSc8,SINE,Alu,-19,292,1,120868573,120868887 +6 - chr11 120868940 120869061 chr11,120868940,120869061,-,UCON49,LINE,L2,-80,619,491,120868860,120869551 +6 - chr11 120870003 120870320 chr11,120870003,120870320,-,MLT1L,LTR,ERVL-MaLR,-240,370,15,120869763,120870334 +6 - chr11 120870651 120870732 chr11,120870651,120870732,+,MIR3,SINE,MIR,78,151,-57,120870574,120870789 -6 + chr11 120870732 120871047 chr11,120870732,120871047,-,AluSz,SINE,Alu,0,312,1,120870732,120871047 +6 - chr11 120871047 120871104 chr11,120871047,120871104,+,MIR3,SINE,MIR,152,208,0,120870896,120871104 -6 + chr11 120871794 120871828 chr11,120871794,120871828,+,GA-rich,Low_complexity,Low_complexity,1,34,0,120871794,120871828 -6 + chr11 120872153 120872346 chr11,120872153,120872346,-,MIRc,SINE,MIR,-37,193,2,120872116,120872347 +6 - chr11 120872748 120872779 chr11,120872748,120872779,+,(TTTG)n,Simple_repeat,Simple_repeat,1,32,0,120872748,120872779 -6 + chr11 120873016 120873118 chr11,120873016,120873118,-,L2c,LINE,L2,-40,3347,3250,120872976,120876367 +6 - chr11 120873181 120873466 chr11,120873181,120873466,+,L2c,LINE,L2,2963,3250,-125,120870219,120873591 -6 + chr11 120894317 120894364 chr11,120894189,120894364,-,MIRc,SINE,MIR,-38,230,49,120894151,120894412 +4 - chr11 120894402 120894522 chr11,120894402,120894522,+,MER91A,DNA,hAT-Tip100,70,196,0,120894333,120894522 -6 + chr11 121447331 121447609 chr11,121447311,121447609,-,AluJb,SINE,Alu,-11,301,4,121447300,121447612 +5 - chr11 121447980 121448222 chr11,121447980,121448222,+,MIRc,SINE,MIR,44,268,0,121447937,121448222 -6 + chr11 121448674 121449006 chr11,121448674,121449006,-,L2b,LINE,L2,0,3375,3029,121448674,121452034 +6 - chr11 121449497 121449653 chr11,121449497,121449653,-,MIR3,SINE,MIR,-93,175,18,121449404,121449670 +6 - chr11 121449667 121449866 chr11,121449667,121449866,-,MIRc,SINE,MIR,-37,231,12,121449630,121449877 +5 - chr11 122028644 122028845 chr11,122028644,122028852,+,MamRTE1,LINE,RTE-BovB,3446,3654,-158,122025199,122029010 -2 + chr11 122065560 122065912 chr11,122065535,122065912,+,THE1C,LTR,ERVL-MaLR,2,375,0,122065534,122065912 -5 + chr11 122066057 122066434 chr11,122066057,122066503,-,MLT1C,LTR,ERVL-MaLR,0,467,14,122066057,122066516 +5 - chr11 122089982 122090153 chr11,122089982,122090153,+,MIR3,SINE,MIR,7,175,-33,122089976,122090186 -6 + chr11 122090220 122090241 chr11,122090220,122090241,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,122090220,122090241 -6 + chr11 122090499 122090647 chr11,122090499,122090647,+,MIRb,SINE,MIR,82,262,0,122090418,122090647 -6 + chr11 122100493 122100520 chr11,122100493,122100520,+,G-rich,Low_complexity,Low_complexity,1,27,0,122100493,122100520 -6 + chr11 122101494 122101527 chr11,122101494,122101527,+,(TCCTTT)n,Simple_repeat,Simple_repeat,1,34,0,122101494,122101527 -6 + chr11 122101713 122101752 chr11,122101713,122101752,+,GA-rich,Low_complexity,Low_complexity,1,39,0,122101713,122101752 -6 + chr11 122295190 122295248 chr11,122295163,122295248,-,MIR3,SINE,MIR,-48,160,72,122295115,122295319 -1 - chr11 122295656 122295742 chr11,122295656,122295853,+,MIR3,SINE,MIR,7,207,-1,122295650,122295854 +4 + chr11 122301325 122301456 chr11,122301169,122301456,+,AluSg,SINE,Alu,1,310,0,122301169,122301456 -4 + chr11 122367622 122367852 chr11,122367622,122367852,+,(GAAA)n,Simple_repeat,Simple_repeat,1,236,0,122367622,122367852 -1 + chr11 123227988 123228007 chr11,123227960,123228007,-,L3b,LINE,CR1,-251,4981,4935,123227709,123232941 -2 - chr11 123228179 123228277 chr11,123228179,123228384,-,MIRc,SINE,MIR,-15,253,23,123228164,123228406 -5 - chr11 123313704 123313793 chr11,123313704,123313895,+,MIRb,SINE,MIR,17,241,-27,123313688,123313922 -2 + chr11 123314321 123314398 chr11,123314143,123314442,+,AluSz,SINE,Alu,1,299,-13,123314143,123314455 -3 + chr11 123314492 123314702 chr11,123314473,123314702,-,MIR,SINE,MIR,-1,261,17,123314472,123314718 +4 - chr11 123458372 123458569 chr11,123458109,123458569,-,MLT2B2,LTR,ERVL,-46,469,1,123458063,123458569 -2 - chr11 123458686 123458706 chr11,123458686,123458706,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,123458686,123458706 +6 + chr11 123459256 123459554 chr11,123459256,123459554,-,AluSq2,SINE,Alu,-14,299,1,123459242,123459554 -6 - chr11 123459951 123459992 chr11,123459951,123459992,+,(TGTCCT)n,Simple_repeat,Simple_repeat,1,41,0,123459951,123459992 +6 + chr11 123668744 123669024 chr11,123668744,123669106,+,THE1D,LTR,ERVL-MaLR,1,381,0,123668744,123669106 +4 + chr11 124744634 124744733 chr11,124744502,124744733,+,MIRb,SINE,MIR,18,260,-8,124744485,124744741 -5 + chr11 124744795 124744830 chr11,124744795,124744830,+,(TCTTT)n,Simple_repeat,Simple_repeat,1,36,0,124744795,124744830 -6 + chr11 124765795 124765936 chr11,124765795,124766119,+,AluJr,SINE,Alu,1,304,-8,124765795,124766127 +5 + chr11 124801565 124801761 chr11,124801565,124801761,-,L1PB1,LINE,L1,0,6151,5957,124801565,124807717 -6 - chr11 124801990 124802157 chr11,124801990,124802197,+,MIR,SINE,MIR,2,241,-21,124801989,124802218 +4 + chr11 124804731 124804848 chr11,124804392,124804929,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,124804392,124804929 +3 + chr11 124805320 124805346 chr11,124804976,124805346,+,L2a,LINE,L2,2951,3386,-40,124802026,124805386 +2 + chr11 124805361 124805891 chr11,124805361,124805891,+,L1ME1,LINE,L1,51,603,-5797,124805311,124811688 +6 + chr11 124805891 124806627 chr11,124805891,124806627,+,Charlie3,DNA,hAT-Charlie,1,770,-1936,124805891,124808563 +6 + chr11 124806627 124806745 chr11,124806627,124806938,+,AluSz,SINE,Alu,1,301,-11,124806627,124806949 +5 + chr11 124832886 124833290 chr11,124832603,124833290,-,MER21B,LTR,ERVL,-88,850,1,124832515,124833290 -2 - chr11 124833444 124833721 chr11,124833444,124833721,-,AluJb,SINE,Alu,-14,298,2,124833430,124833722 -6 - chr11 124833723 124833855 chr11,124833723,124833855,-,AluJo,SINE,Alu,-178,134,1,124833545,124833855 -6 - chr11 124833871 124834019 chr11,124833871,124834019,-,MIRc,SINE,MIR,-112,156,14,124833759,124834032 -6 - chr11 124883691 124883808 chr11,124883487,124883808,-,AluYh3,SINE,Alu,0,311,1,124883487,124883808 -1 - chr11 124883808 124883989 chr11,124883808,124883989,+,LTR31,LTR,ERV1,328,493,-126,124883481,124884115 +6 + chr11 124892116 124892126 chr11,124892116,124892304,+,MIRb,SINE,MIR,61,254,-8,124892056,124892312 +5 + chr11 125132847 125132869 chr11,125132621,125132869,+,L2c,LINE,L2,3142,3387,0,125129480,125132869 -5 + chr11 125160546 125160627 chr11,125160402,125160627,-,MIR,SINE,MIR,-12,250,21,125160390,125160647 +4 - chr11 125164498 125164544 chr11,125164498,125164544,+,(GCCGCCC)n,Simple_repeat,Simple_repeat,1,47,0,125164498,125164544 -6 + chr11 125188115 125188158 chr11,125188001,125188165,-,MIR,SINE,MIR,-6,256,71,125187995,125188235 -1 - chr11 125189970 125190068 chr11,125189921,125190223,-,AluSc,SINE,Alu,-7,302,1,125189914,125190223 -1 - chr11 125190985 125191057 chr11,125190935,125191078,+,L2c,LINE,L2,3233,3372,-15,125187703,125191093 +3 + chr11 125191166 125191302 chr11,125191127,125191302,-,MIRc,SINE,MIR,-80,188,9,125191047,125191310 -2 - chr11 125497278 125497572 chr11,125497278,125497572,+,AluJr,SINE,Alu,1,307,-5,125497278,125497577 +6 + chr11 125497626 125497705 chr11,125497626,125497705,+,MIR,SINE,MIR,77,159,-103,125497550,125497808 +6 + chr11 125497705 125498001 chr11,125497705,125498001,+,AluY,SINE,Alu,2,304,-7,125497704,125498008 +6 + chr11 125498001 125498098 chr11,125498001,125498098,+,MIR,SINE,MIR,160,252,-16,125497842,125498114 +6 + chr11 125498687 125498879 chr11,125498687,125498879,+,MIRb,SINE,MIR,80,255,-13,125498608,125498892 +6 + chr11 125499002 125499472 chr11,125499002,125499472,-,L1MB4,LINE,L1,-2,6178,5702,125499000,125505173 -6 - chr11 125499511 125499528 chr11,125499511,125499543,-,L1MB4,LINE,L1,-469,5714,5683,125499042,125505225 -5 - chr11 125570284 125570301 chr11,125570199,125570301,+,MIRc,SINE,MIR,46,148,-120,125570154,125570421 -5 + chr11 125573460 125573574 chr11,125573460,125573598,+,FLAM_C,SINE,Alu,1,273,-29,125573460,125573627 -2 + chr11 125873031 125873107 chr11,125872502,125873107,+,L1P4,LINE,L1,3750,4354,-1792,125868753,125874899 -5 + chr11 125873141 125873229 chr11,125873141,125873229,+,L1MC,LINE,L1,5150,5237,-909,125867992,125874138 -6 + chr11 125873398 125874006 chr11,125873398,125874006,+,LTR9D,LTR,ERV1,1,645,0,125873398,125874006 -5 + chr11 125874041 125874528 chr11,125874041,125875038,+,HUERS-P3-int,LTR,ERV1,25,1115,-7804,125874017,125882842 -1 + chr11 125927743 125927909 chr11,125927743,125927909,+,L3,LINE,CR1,3931,4098,-1,125923813,125927910 +6 + chr11 125928273 125928646 chr11,125928273,125928646,-,L1ME4c,LINE,L1,-226,604,208,125928047,125928853 -6 - chr11 125938686 125938916 chr11,125938385,125939036,+,LTR50,LTR,ERVL,14,795,0,125938372,125939036 -1 + chr11 125940060 125940154 chr11,125939847,125940231,+,MLT1A1,LTR,ERVL-MaLR,1,406,-2,125939847,125940233 +3 + chr11 125940496 125940608 chr11,125940392,125940608,-,MamGypLTR1a,LTR,Gypsy,-460,324,83,125939932,125940690 +5 - chr11 125940637 125940768 chr11,125940637,125940768,-,L1MC5a,LINE,L1,-158,2619,2484,125940479,125943251 +6 - chr11 125940768 125941063 chr11,125940768,125941063,-,AluSz,SINE,Alu,-16,296,2,125940752,125941064 +6 - chr11 125941063 125941081 chr11,125941063,125941081,-,L1MC5a,LINE,L1,-294,2483,2469,125940769,125943549 +6 - chr11 125941085 125941193 chr11,125941085,125941210,-,MIRb,SINE,MIR,-111,157,24,125940974,125941233 +1 - chr11 125942595 125942652 chr11,125942587,125942746,+,L3,LINE,CR1,3726,3896,-203,125938862,125942949 +3 + chr11 125942884 125942935 chr11,125942757,125942935,-,MIRb,SINE,MIR,-6,262,87,125942751,125943021 -2 - chr11 125943615 125943683 chr11,125943580,125943683,-,MIRb,SINE,MIR,-56,212,81,125943524,125943763 -2 - chr11 125958302 125958418 chr11,125958302,125958418,+,MIRb,SINE,MIR,148,264,-4,125958155,125958422 +6 + chr11 125958547 125958565 chr11,125958547,125958565,+,(TA)n,Simple_repeat,Simple_repeat,1,18,0,125958547,125958565 +6 + chr11 125958565 125958592 chr11,125958565,125958592,+,(TG)n,Simple_repeat,Simple_repeat,1,27,0,125958565,125958592 +6 + chr11 125958592 125958625 chr11,125958592,125958625,+,(TA)n,Simple_repeat,Simple_repeat,1,33,0,125958592,125958625 +6 + chr11 126100629 126100748 chr11,126100629,126100748,+,MIRc,SINE,MIR,112,243,-25,126100518,126100773 -6 + chr11 126102032 126102160 chr11,126102032,126102160,+,MIR,SINE,MIR,9,140,-122,126102024,126102282 -6 + chr11 126175840 126176011 chr11,126175840,126176011,+,MIR3,SINE,MIR,14,194,-14,126175827,126176025 +6 + chr11 126208611 126208677 chr11,126208548,126208677,+,L1ME3G,LINE,L1,558,690,-234,126207991,126208911 -5 + chr11 126208807 126208872 chr11,126208807,126208991,+,L1ME3G,LINE,L1,725,908,-16,126208083,126209007 -2 + chr11 126208928 126208991 chr11,126208807,126208991,+,L1ME3G,LINE,L1,725,908,-16,126208083,126209007 -4 + chr11 126208995 126209027 chr11,126208995,126209286,-,AluJr,SINE,Alu,-16,296,5,126208979,126209290 +1 - chr11 126293134 126293286 chr11,126293134,126293340,+,MIR,SINE,MIR,5,231,-31,126293130,126293371 -2 + chr11 126297017 126297126 chr11,126297017,126297764,-,L1ME3E,LINE,L1,-1096,5050,4247,126295921,126302010 +1 - chr11 126934886 126935077 chr11,126934778,126935077,+,AluY,SINE,Alu,1,305,-6,126934778,126935083 -5 + chr11 126935077 126936071 chr11,126935077,126936071,+,L1MC1,LINE,L1,5335,6332,-1,126929743,126936072 -6 + chr11 126936063 126936931 chr11,126936063,126936931,+,L1MB7,LINE,L1,5315,6175,-9,126930749,126936940 -6 + chr11 126940571 126940594 chr11,126940571,126940594,+,(GT)n,Simple_repeat,Simple_repeat,1,23,0,126940571,126940594 -6 + chr11 126940789 126940823 chr11,126940789,126940823,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,126940789,126940823 +1 + chr11 126944316 126944388 chr11,126943906,126944388,+,MER39,LTR,ERV1,1,683,-24,126943906,126944412 +2 + chr11 127005867 127005966 chr11,127005864,127005966,+,L2b,LINE,L2,3263,3372,-3,127002602,127005969 +2 + chr11 127006047 127006058 chr11,127006047,127006192,+,AmnSINE1,SINE,5S-Deu-L2,432,571,-4,127005616,127006196 +5 + chr11 127021754 127021907 chr11,127021589,127021983,+,MLT1B,LTR,ERVL-MaLR,1,389,-1,127021589,127021984 +1 + chr11 127053384 127053517 chr11,127053384,127053517,-,L2,LINE,L2,-1025,2394,2259,127052359,127055775 -6 - chr11 127099454 127100256 chr11,127099454,127100256,+,L1MA9,LINE,L1,5391,6298,-14,127094064,127100270 +6 + chr11 127100466 127100853 chr11,127100466,127100853,+,L3,LINE,CR1,3492,3934,-165,127096975,127101018 +6 + chr11 127139475 127139705 chr11,127139446,127139705,+,MER126,DNA,DNA,87,348,-101,127139360,127139806 +2 + chr11 127190769 127190819 chr11,127190467,127191321,-,MER21C,LTR,ERVL,-70,868,1,127190397,127191321 -1 - chr11 127192767 127192805 chr11,127192627,127192805,-,MER5A1,DNA,hAT-Charlie,0,189,9,127192627,127192813 -2 - chr11 127271062 127271173 chr11,127271022,127271282,+,UCON105,Unknown,Unknown,1,268,-5,127271022,127271287 +1 + chr11 127335024 127335145 chr11,127335008,127335307,-,AluSz,SINE,Alu,-18,294,1,127334990,127335307 -3 - chr11 127336765 127336897 chr11,127335832,127336897,-,L1MD2,LINE,L1,-280,6079,4978,127335552,127341874 -2 - chr11 128183109 128183354 chr11,128183109,128183354,+,MIRb,SINE,MIR,7,261,-7,128183103,128183361 +6 + chr11 128208829 128208897 chr11,128208801,128208897,+,L2c,LINE,L2,3197,3299,-88,128205605,128208985 +1 + chr11 128241389 128241441 chr11,128241389,128241525,+,L1MA5A,LINE,L1,6151,6294,-3,128235239,128241528 +5 + chr11 128526146 128526190 chr11,128526146,128526190,+,G-rich,Low_complexity,Low_complexity,1,44,0,128526146,128526190 +6 + chr11 128526235 128526315 chr11,128526235,128526448,+,MIRb,SINE,MIR,20,230,-38,128526216,128526486 +4 + chr11 128526829 128526998 chr11,128526829,128526998,-,MIR3,SINE,MIR,-18,190,18,128526811,128527015 -6 - chr11 128530212 128530335 chr11,128530212,128530335,-,UCON29,DNA,PiggyBac?,-165,274,142,128530047,128530476 -6 - chr11 128614340 128614409 chr11,128614222,128614409,+,MIRb,SINE,MIR,43,216,-52,128614180,128614461 -5 + chr11 128614777 128614975 chr11,128614777,128614975,-,L2a,LINE,L2,-107,3319,3102,128614670,128618076 +6 - chr11 128615165 128615236 chr11,128615165,128615698,-,L2a,LINE,L2,-783,2636,2032,128614382,128617729 +1 - chr11 128616587 128616644 chr11,128616587,128616644,-,MIRb,SINE,MIR,-32,236,180,128616555,128616823 +6 - chr11 128616699 128616766 chr11,128616699,128616766,-,MIRc,SINE,MIR,-128,140,73,128616571,128616838 +6 - chr11 128651857 128651936 chr11,128651774,128652149,-,THE1D,LTR,ERVL-MaLR,0,381,1,128651774,128652149 +3 - chr11 128681309 128681351 chr11,128681309,128681351,+,A-rich,Low_complexity,Low_complexity,1,43,0,128681309,128681351 -6 + chr11 128681482 128681872 chr11,128681482,128681872,-,MLT1B,LTR,ERVL-MaLR,0,390,4,128681482,128681875 +6 - chr11 128681974 128682142 chr11,128681974,128682142,-,MIR3,SINE,MIR,-3,205,16,128681971,128682157 +6 - chr11 128686540 128686587 chr11,128686540,128686587,+,(TCTCCA)n,Simple_repeat,Simple_repeat,1,50,0,128686540,128686587 -6 + chr11 130003831 130003919 chr11,130003831,130003919,+,MIRb,SINE,MIR,157,233,-35,130003675,130003954 +6 + chr11 130004073 130004356 chr11,130004073,130004384,-,AluSz,SINE,Alu,0,312,1,130004073,130004384 -5 - chr11 130323914 130324061 chr11,130323628,130324136,+,MLT2B1,LTR,ERVL,1,520,0,130323628,130324136 +3 + chr11 130333864 130333970 chr11,130333318,130334211,-,L1MA3,LINE,L1,0,6305,5441,130333318,130339651 -3 - chr11 130368894 130369002 chr11,130368702,130369002,+,L2a,LINE,L2,3080,3423,-3,130365623,130369005 +2 + chr11 130393495 130393521 chr11,130393434,130393521,+,LTR79,LTR,ERVL,400,497,-30,130393035,130393551 +2 + chr11 130401010 130401041 chr11,130400897,130401041,+,MER121,DNA,hAT?,133,303,-98,130400765,130401139 +2 + chr11 130403301 130403505 chr11,130403277,130403505,+,UCON29,DNA,PiggyBac?,39,274,-165,130403239,130403670 +2 + chr11 130844327 130844638 chr11,130844327,130844638,-,AluSg,SINE,Alu,0,310,2,130844327,130844639 +6 - chr11 130844653 130844782 chr11,130844653,130844782,-,AluY,SINE,Alu,-180,131,1,130844473,130844782 +5 - chr11 130844956 130845036 chr11,130844956,130845075,+,MIR3,SINE,MIR,40,169,-39,130844917,130845114 -2 + chr11 130854727 130854815 chr11,130854726,130854815,+,(CTCTTT)n,Simple_repeat,Simple_repeat,1,92,0,130854726,130854815 -4 + chr11 130866804 130866866 chr11,130866804,130866866,+,MIRc,SINE,MIR,8,76,-192,130866797,130867058 -6 + chr11 130866865 130867111 chr11,130866865,130867111,-,MIR,SINE,MIR,0,262,8,130866865,130867118 +6 - chr11 130867087 130867306 chr11,130867087,130867306,+,MIRc,SINE,MIR,47,255,-13,130867041,130867319 -6 + chr11 130867778 130867870 chr11,130867778,130867870,-,MIR3,SINE,MIR,-25,183,86,130867753,130867955 +6 - chr11 130869074 130869173 chr11,130869074,130869173,-,L2b,LINE,L2,-60,3315,3199,130869014,130872371 +6 - chr11 131189498 131189740 chr11,131189498,131189740,+,L1ME4b,LINE,L1,646,892,0,131188853,131189740 +6 + chr11 131300692 131300771 chr11,131300692,131300883,+,L2a,LINE,L2,3243,3426,0,131297450,131300883 +5 + chr11 131350309 131350359 chr11,131350219,131350359,-,MIRb,SINE,MIR,-38,230,87,131350181,131350445 -2 - chr11 131350594 131350700 chr11,131350594,131350700,-,L2c,LINE,L2,-8,3379,3273,131350586,131353972 -6 - chr11 131502759 131502831 chr11,131502675,131502831,+,L2a,LINE,L2,3277,3419,-7,131499399,131502838 -5 + chr11 131502851 131502964 chr11,131502851,131503527,-,L2a,LINE,L2,-1358,2061,1338,131501493,131504864 +2 - chr11 131534332 131534409 chr11,131534332,131534409,+,(AC)n,Simple_repeat,Simple_repeat,1,79,0,131534332,131534409 -6 + chr11 131534445 131534567 chr11,131534445,131534567,+,MIRb,SINE,MIR,117,254,-14,131534329,131534581 -6 + chr11 131534889 131534991 chr11,131534889,131534991,-,UCON27,Unknown,Unknown,-1059,209,112,131533830,131535102 +6 - chr11 131535200 131535357 chr11,131535200,131535357,-,L2a,LINE,L2,-23,3403,3247,131535177,131538603 +6 - chr11 131536500 131536641 chr11,131536500,131536641,-,L1ME2z,LINE,L1,-14,6430,6275,131536486,131542915 +6 - chr11 131538220 131538407 chr11,131538220,131538407,-,MIR3,SINE,MIR,-4,204,6,131538216,131538412 +6 - chr11 131538438 131538544 chr11,131538438,131538544,-,MIRb,SINE,MIR,-10,258,147,131538428,131538690 +6 - chr11 131539092 131539229 chr11,131538921,131539229,-,AluJb,SINE,Alu,-3,309,13,131538918,131539241 +4 - chr11 131539558 131539608 chr11,131539558,131539786,-,L2a,LINE,L2,-261,3165,2932,131539297,131542717 +2 - chr11 131877979 131878075 chr11,131877979,131878075,+,MamTip2,DNA,hAT-Tip100,113,209,-96,131877867,131878171 -6 + chr11 131897025 131897047 chr11,131896987,131897047,-,MER20B,DNA,hAT-Charlie,-530,253,194,131896457,131897240 +4 - chr11 131984483 131984661 chr11,131984108,131985395,-,MLT1J1-int,LTR,ERVL-MaLR,-19,1368,1,131984089,131985395 +1 - chr11 132284302 132284358 chr11,132284209,132284529,-,MLT1B,LTR,ERVL-MaLR,-9,381,53,132284200,132284581 -1 - chr11 132403541 132403576 chr11,132403541,132403576,+,(ATTC)n,Simple_repeat,Simple_repeat,1,35,0,132403541,132403576 -6 + chr11 132860012 132860077 chr11,132859627,132860195,-,Tigger8,DNA,TcMar-Tigger,-3,664,8,132859624,132860202 +1 - chr11 133064790 133065004 chr11,133064790,133065004,-,L2a,LINE,L2,-1,3386,3181,133064789,133068184 -6 - chr11 133066668 133066978 chr11,133066668,133066978,-,AluSx,SINE,Alu,-4,308,1,133066664,133066978 -6 - chr11 133067137 133067353 chr11,133067137,133067353,-,MIRc,SINE,MIR,-37,231,7,133067100,133067359 -6 - chr11 133297852 133297951 chr11,133297852,133297951,-,MIRc,SINE,MIR,-19,249,151,133297833,133298101 +6 - chr11 133298394 133298474 chr11,133298394,133298474,+,MIR,SINE,MIR,183,262,0,133298212,133298474 -6 + chr11 133299974 133300059 chr11,133299974,133300059,-,L2c,LINE,L2,-49,3338,3244,133299925,133303302 +6 - chr11 133300598 133301076 chr11,133300598,133301076,+,MLT1D,LTR,ERVL-MaLR,1,505,0,133300598,133301076 -6 + chr11 133301108 133301199 chr11,133301108,133301199,+,MER94,DNA,hAT-Blackjack,41,134,0,133301068,133301199 -6 + chr11 133302142 133302502 chr11,133302142,133302502,+,THE1D,LTR,ERVL-MaLR,1,381,0,133302142,133302502 -6 + chr11 133360058 133360287 chr11,133360058,133360287,-,MIRb,SINE,MIR,-6,262,11,133360052,133360297 +6 - chr11 133360753 133360928 chr11,133360753,133360928,+,MIR,SINE,MIR,18,200,-68,133360736,133360996 -6 + chr11 133365309 133365600 chr11,133365253,133365600,-,MLT1A0,LTR,ERVL-MaLR,-12,353,4,133365241,133365603 +4 - chr11 133365719 133365793 chr11,133365719,133365793,-,MLT1J,LTR,ERVL-MaLR,-173,437,364,133365546,133366156 +6 - chr11 133365869 133366051 chr11,133365869,133366051,-,MLT1J,LTR,ERVL-MaLR,-332,180,1,133365537,133366051 +6 - chr11 133783683 133783883 chr11,133783683,133783883,-,MIRb,SINE,MIR,-13,255,17,133783670,133783899 +6 - chr11 133784009 133784444 chr11,133784009,133784444,+,MLT1C,LTR,ERVL-MaLR,2,467,0,133784008,133784444 -6 + chr11 133897356 133897426 chr11,133897356,133897426,+,(CA)n,Simple_repeat,Simple_repeat,1,70,0,133897356,133897426 -6 + chr11 133901393 133901447 chr11,133901393,133901447,+,(AT)n,Simple_repeat,Simple_repeat,1,55,0,133901393,133901447 -6 + chr11 134027683 134027804 chr11,134027619,134027804,-,MIRb,SINE,MIR,-41,189,14,134027578,134027817 -2 - chr11 134036100 134036396 chr11,134036100,134036396,+,AluSq2,SINE,Alu,1,297,-16,134036100,134036412 -6 + chr11 134036994 134037029 chr11,134036994,134037029,+,(CCCCG)n,Simple_repeat,Simple_repeat,1,36,0,134036994,134037029 -6 + chr11 134037050 134037107 chr11,134037050,134037125,+,(ACTCTTCTCG)n,Simple_repeat,Simple_repeat,1,75,0,134037050,134037125 -1 + chr11 134037109 134037125 chr11,134037050,134037125,+,(ACTCTTCTCG)n,Simple_repeat,Simple_repeat,1,75,0,134037050,134037125 +1 + chr11 134037390 134037453 chr11,134037390,134037453,+,G-rich,Low_complexity,Low_complexity,1,64,0,134037390,134037453 +6 + chr11 134037531 134037645 chr11,134037531,134037645,-,MIR3,SINE,MIR,-6,202,87,134037525,134037731 -6 - chr11 134038172 134038288 chr11,134038172,134038288,+,L2a,LINE,L2,3303,3418,-8,134034870,134038296 +6 + chr11 134038401 134038430 chr11,134038401,134038430,+,(TGTT)n,Simple_repeat,Simple_repeat,1,29,0,134038401,134038430 +6 + chr11 134038431 134038714 chr11,134038431,134038714,-,AluY,SINE,Alu,-28,283,1,134038403,134038714 -1 - chr11 134039762 134039862 chr11,134039664,134039862,-,MIR,SINE,MIR,-3,259,15,134039661,134039876 -5 - chr11 134040369 134040440 chr11,134040369,134040440,+,A-rich,Low_complexity,Low_complexity,1,71,0,134040369,134040440 +6 + chr11 134041159 134041197 chr11,134041159,134041197,+,(GTGT)n,Simple_repeat,Simple_repeat,1,38,0,134041159,134041197 +6 + chr11 134185929 134186049 chr11,134185906,134186049,-,AluYc,SINE,Alu,-11,288,146,134185895,134186194 -2 - chr11 134466185 134466378 chr11,134466140,134466378,+,MamGypsy2-I,LTR,Gypsy,2171,2430,-1736,134463970,134468114 +1 + chr11 134466689 134466835 chr11,134466689,134466835,+,MIRb,SINE,MIR,107,244,-24,134466583,134466859 +6 + chr11 134467217 134467615 chr11,134467217,134467788,+,LTR66,LTR,ERVL,1,610,0,134467217,134467788 +5 + chr11 134467865 134467987 chr11,134467840,134468149,-,AluSq2,SINE,Alu,-9,304,1,134467831,134468149 -3 - chr11 134479299 134479333 chr11,134479272,134479333,-,MIRb,SINE,MIR,-6,262,202,134479266,134479534 -1 - chr11 134479490 134479820 chr11,134479490,134479820,+,MLT1L,LTR,ERVL-MaLR,204,549,-61,134479287,134479881 +6 + chr11 134479882 134480010 chr11,134479882,134480010,-,MIR,SINE,MIR,-85,177,47,134479797,134480056 -6 - chr11 134485962 134486076 chr11,134485923,134486076,+,L2c,LINE,L2,3243,3382,-5,134482681,134486081 +2 + chr11 134486082 134486126 chr11,134486082,134486126,+,GA-rich,Low_complexity,Low_complexity,1,44,0,134486082,134486126 +6 + chr11 134487795 134487915 chr11,134487795,134488097,+,L1PB4,LINE,L1,5559,5855,-301,134482237,134488398 +5 + chr11 134505126 134505661 chr11,134505126,134505885,-,L1ME1,LINE,L1,-1,6178,5448,134505125,134511332 -5 - chr11 134671426 134671509 chr11,134671321,134671509,+,MER3,DNA,hAT-Charlie,21,209,0,134671301,134671509 -5 + chr11 134671570 134671756 chr11,134671570,134671954,-,MSTB1,LTR,ERVL-MaLR,0,432,43,134671570,134671996 +2 - chr11 134671967 134672024 chr11,134671966,134672424,-,L1ME3A,LINE,L1,-67,6106,5625,134671899,134678048 +1 - chr11 134736341 134736481 chr11,134736341,134736481,-,MER20,DNA,hAT-Charlie,-60,159,30,134736281,134736510 -6 - chr11 134761074 134761270 chr11,134761062,134761270,+,MLT1D,LTR,ERVL-MaLR,260,492,-13,134760803,134761283 +2 + chr11 134761837 134761884 chr11,134761837,134761884,+,L2b,LINE,L2,3329,3375,0,134758509,134761884 +6 + chr11 134763369 134763455 chr11,134763369,134763455,+,L2b,LINE,L2,3285,3375,0,134760085,134763455 +6 + chr11 134763658 134763810 chr11,134763658,134763860,-,L3,LINE,CR1,-741,3358,3147,134762917,134767006 -5 - chr11 134950991 134951095 chr11,134950991,134951095,+,MER5A1,DNA,hAT-Charlie,7,112,-54,134950985,134951149 +6 + chr11 134951156 134951236 chr11,134951156,134951236,+,MER5B,DNA,hAT-Charlie,37,117,-61,134951120,134951297 +6 + chr11 134951267 134951297 chr11,134951267,134951369,-,MIRc,SINE,MIR,-126,142,40,134951141,134951408 -4 - chr11 134985683 134985716 chr11,134985649,134985716,-,MER51E,LTR,ERV1,-282,200,134,134985367,134985849 -1 - chr11 134985720 134985786 chr11,134985720,134985786,-,MER51E,LTR,ERV1,-283,199,134,134985437,134985919 -6 - chr11 134985789 134985856 chr11,134985789,134985856,-,MER51E,LTR,ERV1,-282,200,134,134985507,134985989 -6 - chr11 134985859 134985926 chr11,134985859,134985926,-,MER51E,LTR,ERV1,-282,200,134,134985577,134986059 -6 - chr11 134985929 134985996 chr11,134985929,134985996,-,MER51E,LTR,ERV1,-282,200,134,134985647,134986129 -6 - chr11 134985965 134986031 chr11,134985965,134986031,-,MER51E,LTR,ERV1,-283,199,134,134985682,134986164 -6 - chr11 134986034 134986101 chr11,134986034,134986101,-,MER51E,LTR,ERV1,-282,200,134,134985752,134986234 -6 - chr11 134986069 134986136 chr11,134986069,134986136,-,MER51E,LTR,ERV1,-282,200,134,134985787,134986269 -6 - chr11 134986139 134986206 chr11,134986139,134986206,-,MER51E,LTR,ERV1,-282,200,134,134985857,134986339 -6 - chr11 134986174 134986241 chr11,134986174,134986241,-,MER51E,LTR,ERV1,-282,200,134,134985892,134986374 -6 - chr11 134986244 134986311 chr11,134986244,134986311,-,MER51E,LTR,ERV1,-282,200,134,134985962,134986444 -6 - chr11 134986279 134986346 chr11,134986279,134986346,-,MER51E,LTR,ERV1,-282,200,134,134985997,134986479 -6 - chr11 134986349 134986416 chr11,134986349,134986416,-,MER51E,LTR,ERV1,-282,200,134,134986067,134986549 -6 - chr11 134986384 134986451 chr11,134986384,134986451,-,MER51E,LTR,ERV1,-282,200,134,134986102,134986584 -6 - chr11 134986454 134986521 chr11,134986454,134986521,-,MER51E,LTR,ERV1,-282,200,134,134986172,134986654 -6 - chr11 134986489 134986556 chr11,134986489,134986556,-,MER51E,LTR,ERV1,-282,200,134,134986207,134986689 -6 - chr11 134986524 134986740 chr11,134986524,134986740,-,MER51E,LTR,ERV1,-282,200,1,134986242,134986740 -6 - chr11 135061781 135061875 chr11,135061597,135061875,-,MLT1D,LTR,ERVL-MaLR,-8,497,180,135061589,135062054 +5 - chr11 135074304 135074371 chr11,135074304,135074507,+,MIRb,SINE,MIR,54,263,-5,135074251,135074512 -2 + chr11 135075611 135075668 chr11,135075501,135075668,-,MER92-int,LTR,ERV1,-1250,3968,3799,135074251,135079466 +4 - chr11 135075694 135075899 chr11,135075694,135076563,+,TAR1,Satellite,telo,1,1042,-938,135075694,135077501 -1 + chr12 36612 36985 chr12,36612,36985,-,MLT1J2,LTR,ERVL-MaLR,0,448,25,36612,37009 +5 - chr12 37264 37414 chr12,37264,37414,-,MIRb,SINE,MIR,-13,255,87,37251,37500 +6 - chr12 37414 37529 chr12,37414,37547,+,AluJr,SINE,Alu,1,133,-179,37414,37726 -2 + chr12 111619 111833 chr12,110820,111833,-,HERVP71A-int,LTR,ERV1,-5809,1128,2,105011,111834 +4 - chr12 111833 111850 chr12,111833,112456,-,LTR71B,LTR,ERV1,0,610,1,111833,112456 +1 - chr12 137411 137621 chr12,137405,137621,-,L1MC5a,LINE,L1,-4,2773,2553,137401,140173 +5 - chr12 139534 139736 chr12,139508,139736,+,MER113B,DNA,hAT-Charlie,43,291,-23,139466,139759 -5 + chr12 140240 140370 chr12,140219,140434,-,MIRb,SINE,MIR,-34,234,9,140185,140442 +3 - chr12 140648 140705 chr12,140474,140705,-,MER5C1,DNA,hAT-Charlie,-6,257,33,140468,140737 +4 - chr12 141478 141602 chr12,141478,141602,-,L2a,LINE,L2,-19,3407,3274,141459,144875 +6 - chr12 142285 142471 chr12,142285,142471,+,MIR3,SINE,MIR,30,207,-1,142256,142472 -6 + chr12 143302 143470 chr12,143302,143470,+,MIR3,SINE,MIR,14,194,-14,143289,143484 -6 + chr12 143759 143826 chr12,143759,143826,-,L2b,LINE,L2,-2,3373,3295,143757,147120 +6 - chr12 143826 143867 chr12,143826,143867,+,(GT)n,Simple_repeat,Simple_repeat,1,41,0,143826,143867 -6 + chr12 143867 143905 chr12,143867,143905,-,L2b,LINE,L2,-81,3294,3255,143786,147159 +6 - chr12 147984 148141 chr12,147984,148141,-,MIRb,SINE,MIR,-2,266,103,147982,148243 +6 - chr12 148194 148379 chr12,148194,148379,+,MER5A,DNA,hAT-Charlie,1,187,-2,148194,148381 -6 + chr12 164664 164754 chr12,164414,164780,+,L2a,LINE,L2,2988,3420,-6,161427,164786 -5 + chr12 166271 166321 chr12,166271,166493,-,L1MC4,LINE,L1,-382,7660,7429,165889,173921 +1 - chr12 166856 166946 chr12,166788,166946,-,MIRb,SINE,MIR,-7,261,75,166781,167020 +5 - chr12 167576 167595 chr12,167576,167595,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,167576,167595 -6 + chr12 167597 167707 chr12,167597,167725,+,FLAM_C,SINE,Alu,1,133,-10,167597,167735 -2 + chr12 194001 194085 chr12,194001,194085,-,L3,LINE,CR1,-3,4096,4004,193998,198088 -6 - chr12 194025 194130 chr12,194025,194199,+,MamTip2,DNA,hAT-Tip100,56,242,-63,193970,194262 +5 + chr12 204664 204694 chr12,204664,204694,+,GA-rich,Low_complexity,Low_complexity,1,30,0,204664,204694 +6 + chr12 273954 274093 chr12,273788,274093,+,L1ME3Cz,LINE,L1,4944,5291,-855,268845,274948 -5 + chr12 274094 274336 chr12,274094,274336,+,L1ME3Cz,LINE,L1,528,673,-324,273567,274660 -6 + chr12 274789 274830 chr12,274789,274830,+,(ATATAAT)n,Simple_repeat,Simple_repeat,1,42,0,274789,274830 -6 + chr12 274908 275136 chr12,274908,275136,+,L1MB8,LINE,L1,5932,6178,0,268977,275136 -6 + chr12 275207 275454 chr12,275207,275454,-,AluSz6,SINE,Alu,-21,291,47,275186,275500 +6 - chr12 275590 275840 chr12,275590,275840,+,L3,LINE,CR1,3621,3889,-210,271970,276050 -6 + chr12 275908 276094 chr12,275908,276094,-,MER5A,DNA,hAT-Charlie,-1,188,1,275907,276094 +6 - chr12 276097 276307 chr12,276097,276307,-,L2c,LINE,L2,-170,3217,3011,275927,279317 +6 - chr12 276313 276418 chr12,276313,276418,-,L2a,LINE,L2,-3,3423,3312,276310,279729 +6 - chr12 276487 276541 chr12,276487,276541,-,L2a,LINE,L2,-224,3151,3094,276263,279634 +6 - chr12 276732 276751 chr12,276732,276751,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,276732,276751 -6 + chr12 277048 277123 chr12,277048,277235,+,L1PB1,LINE,L1,5957,6146,-5,271092,277240 -1 + chr12 643520 643605 chr12,643520,643605,-,MIRb,SINE,MIR,-72,196,108,643448,643712 -6 - chr12 643959 644012 chr12,643825,644012,+,L2c,LINE,L2,3103,3340,-47,640723,644059 +2 + chr12 644171 644213 chr12,644171,644213,-,L2a,LINE,L2,-19,3407,3366,644152,647578 -6 - chr12 644221 644340 chr12,644221,644340,-,MER5A1,DNA,hAT-Charlie,0,166,47,644221,644386 -6 - chr12 644342 644507 chr12,644342,644507,-,MIR,SINE,MIR,-30,238,61,644312,644567 -6 - chr12 644603 644736 chr12,644603,644736,+,ORSL-2b,DNA,hAT-Tip100,1,145,-363,644603,645099 +6 + chr12 644731 644849 chr12,644731,644849,+,ORSL-2b,DNA,hAT-Tip100,343,460,-48,644389,644897 +6 + chr12 644929 645041 chr12,644929,645041,-,L2a,LINE,L2,-613,2806,2700,644316,647740 -6 - chr12 645203 645420 chr12,645203,645420,+,MIRb,SINE,MIR,29,268,0,645175,645420 +5 + chr12 645483 645655 chr12,645483,645655,-,MIRb,SINE,MIR,-67,201,19,645416,645673 -6 - chr12 674801 674897 chr12,674794,674897,-,L1ME4a,LINE,L1,0,6124,6024,674794,680920 +5 - chr12 674897 675019 chr12,674897,675184,+,AluJb,SINE,Alu,1,308,-4,674897,675188 -2 + chr12 681752 681895 chr12,681667,682045,+,MLT1I,LTR,ERVL-MaLR,27,411,0,681641,682045 -3 + chr12 683995 684054 chr12,683831,684054,-,MER103C,DNA,hAT-Charlie,-5,292,65,683826,684118 +4 - chr12 684090 684127 chr12,684090,684323,+,MIR1_Amn,SINE,MIR,7,264,-4,684084,684327 -1 + chr12 974133 974194 chr12,973998,974194,-,L2a,LINE,L2,-796,2623,2422,973202,976615 +5 - chr12 974208 974311 chr12,974208,974311,+,LTR16C,LTR,ERVL,15,115,-374,974194,974685 -6 + chr12 974557 974664 chr12,974557,974664,+,MLT1L,LTR,ERVL-MaLR,502,610,0,974056,974664 -6 + chr12 974676 974909 chr12,974676,974909,-,MIR,SINE,MIR,0,262,2,974676,974910 +6 - chr12 974929 975268 chr12,974929,975268,+,MER44A,DNA,TcMar-Tigger,1,339,0,974929,975268 -6 + chr12 975628 976012 chr12,975628,976012,+,L2,LINE,L2,1822,2313,-1106,973807,977118 -6 + chr12 976012 976037 chr12,976012,976037,+,MLT1H1,LTR,ERVL-MaLR,1,24,-531,976012,976568 -6 + chr12 976037 976328 chr12,976037,976328,+,AluSx3,SINE,Alu,1,290,-21,976037,976349 -6 + chr12 976328 976809 chr12,976328,976809,+,MLT1H1,LTR,ERVL-MaLR,25,555,0,976304,976809 -5 + chr12 976809 976904 chr12,976809,976904,+,L2,LINE,L2,2314,2419,-1000,974496,977904 -6 + chr12 976909 977003 chr12,976909,977003,-,LTR16C,LTR,ERVL,0,489,396,976909,977398 +5 - chr12 976998 977106 chr12,976998,977645,-,MER50C,LTR,ERV1,-23,711,1,976975,977645 +2 - chr12 989809 989824 chr12,989669,989824,-,MIR3,SINE,MIR,-36,172,1,989633,989824 +4 - chr12 990355 990384 chr12,990355,990384,+,(AAAACAA)n,Simple_repeat,Simple_repeat,1,30,0,990355,990384 -6 + chr12 991142 991190 chr12,991142,991354,+,(CGG)n,Simple_repeat,Simple_repeat,1,220,0,991142,991354 -1 + chr12 1380060 1380125 chr12,1379936,1380125,+,L1ME2,LINE,L1,5756,5971,-208,1374181,1380333 -5 + chr12 1380268 1380551 chr12,1380268,1380551,-,LTR78B,LTR,ERV1,-679,617,291,1379589,1380841 +6 - chr12 1386584 1386665 chr12,1386366,1386665,+,AluSz,SINE,Alu,2,296,-16,1386365,1386681 +2 + chr12 1386665 1386866 chr12,1386665,1386866,-,L1ME3A,LINE,L1,-39,6134,5940,1386626,1392805 -6 - chr12 1386919 1386987 chr12,1386919,1387364,+,MLT1C-int,LTR,ERVL-MaLR,937,1371,0,1385983,1387364 +5 + chr12 1391070 1391502 chr12,1391070,1391914,-,L1MDa,LINE,L1,-5500,1133,191,1385570,1392104 +1 - chr12 1502634 1502658 chr12,1502634,1502658,+,(GT)n,Simple_repeat,Simple_repeat,1,24,0,1502634,1502658 -6 + chr12 1506159 1506210 chr12,1505909,1506210,+,AluSp,SINE,Alu,3,301,-12,1505907,1506222 -4 + chr12 1506210 1506801 chr12,1506210,1506801,+,L1MB3,LINE,L1,5599,6180,-3,1500612,1506804 -6 + chr12 1506830 1507041 chr12,1506830,1507041,+,L1MB4,LINE,L1,5986,6180,0,1500845,1507041 -6 + chr12 1507053 1507318 chr12,1507053,1507332,+,AluSz,SINE,Alu,1,296,-16,1507053,1507348 -1 + chr12 1922711 1922853 chr12,1922711,1922853,+,L1MB7,LINE,L1,6044,6179,-5,1916668,1922858 +6 + chr12 1922853 1922867 chr12,1922853,1923080,+,L2a,LINE,L2,3122,3376,-50,1919732,1923130 +5 + chr12 1929226 1929389 chr12,1929226,1929389,+,MIRb,SINE,MIR,70,252,-16,1929157,1929405 -6 + chr12 1929716 1930129 chr12,1929716,1930129,+,GA-rich,Low_complexity,Low_complexity,1,416,0,1929716,1930129 -6 + chr12 1930366 1930518 chr12,1930366,1930518,-,L2b,LINE,L2,-11,3364,3212,1930355,1933729 +6 - chr12 1930705 1930937 chr12,1930705,1930937,-,MLT1L,LTR,ERVL-MaLR,-14,596,355,1930691,1931291 +6 - chr12 1930938 1931002 chr12,1930938,1931002,+,MER5A,DNA,hAT-Charlie,65,132,-57,1930874,1931059 -6 + chr12 2010850 2010866 chr12,2010850,2010866,+,A-rich,Low_complexity,Low_complexity,1,17,0,2010850,2010866 +6 + chr12 2010866 2011198 chr12,2010866,2011198,+,AluSq2,SINE,Alu,1,313,0,2010866,2011198 +6 + chr12 2018213 2018292 chr12,2018065,2018489,-,MER63D,DNA,hAT-Blackjack,-648,413,3,2017417,2018491 -1 - chr12 2020011 2020072 chr12,2020011,2020072,+,(TC)n,Simple_repeat,Simple_repeat,1,62,0,2020011,2020072 +6 + chr12 2020167 2020418 chr12,2020167,2020418,-,MIR,SINE,MIR,0,262,12,2020167,2020429 -6 - chr12 2049134 2049167 chr12,2048927,2049167,-,L1ME4a,LINE,L1,-98,6026,5771,2048829,2054937 -2 - chr12 2049171 2049377 chr12,2049171,2049377,+,MIR,SINE,MIR,14,224,-38,2049158,2049415 +6 + chr12 2049385 2049461 chr12,2049385,2049461,-,L1ME4a,LINE,L1,-347,5777,5699,2049038,2055159 -6 - chr12 2217747 2217844 chr12,2217747,2217844,+,MIRb,SINE,MIR,36,141,-127,2217712,2217971 -6 + chr12 2220751 2220854 chr12,2220751,2221425,-,L2a,LINE,L2,0,3426,2644,2220751,2224068 +2 - chr12 2221615 2221695 chr12,2221542,2222143,+,L1ME4a,LINE,L1,5495,6096,-28,2216048,2222171 -3 + chr12 2222289 2222420 chr12,2222289,2222545,+,MIRc,SINE,MIR,5,251,-17,2222285,2222562 -2 + chr12 2269776 2269941 chr12,2269660,2270139,-,LTR33,LTR,ERVL,-4,511,16,2269656,2270154 -1 - chr12 2288019 2288052 chr12,2287992,2288052,-,L2b,LINE,L2,-6,3369,3307,2287986,2291358 -2 - chr12 2603726 2603773 chr12,2603726,2604364,-,MER39B,LTR,ERV1,-1,652,1,2603725,2604364 +2 - chr12 2668500 2668858 chr12,2668451,2668858,-,MSTA,LTR,ERVL-MaLR,0,428,1,2668451,2668858 +5 - chr12 2676004 2676191 chr12,2676004,2676191,-,MIRb,SINE,MIR,-52,216,14,2675952,2676204 +6 - chr12 2676712 2676987 chr12,2676712,2676987,+,L1ME4b,LINE,L1,609,883,-9,2676104,2676996 -6 + chr12 2689863 2689969 chr12,2689721,2689969,-,L2a,LINE,L2,-3,3423,3130,2689718,2693098 +5 - chr12 2740093 2740201 chr12,2740070,2740311,+,MER112,DNA,hAT-Charlie,7,254,-7,2740064,2740318 +1 + chr12 2742817 2742855 chr12,2742817,2742951,-,LTR62,LTR,ERVL,-5,704,570,2742812,2743520 -5 - chr12 2805131 2805197 chr12,2805055,2805197,-,MIRb,SINE,MIR,-20,248,108,2805035,2805304 +5 - chr12 2805241 2805317 chr12,2805241,2805333,+,MIR3,SINE,MIR,90,205,-3,2805152,2805336 -2 + chr12 2812219 2812329 chr12,2812092,2812329,-,MER112,DNA,hAT-Charlie,-2,259,2,2812090,2812330 +4 - chr12 2885819 2885874 chr12,2885561,2885874,-,AluY,SINE,Alu,0,311,1,2885561,2885874 -1 - chr12 3041487 3041605 chr12,3041487,3041605,+,MIRb,SINE,MIR,30,153,-115,3041458,3041720 +6 + chr12 3041667 3041705 chr12,3041667,3041705,+,(CCTCCCTG)n,Simple_repeat,Simple_repeat,1,38,0,3041667,3041705 +6 + chr12 3041914 3042107 chr12,3041914,3042107,+,MIR,SINE,MIR,14,262,0,3041901,3042107 +6 + chr12 3043252 3043339 chr12,3043252,3043339,-,MIR,SINE,MIR,-70,192,94,3043182,3043432 -6 - chr12 3043357 3043437 chr12,3043357,3043437,-,L2a,LINE,L2,0,3426,3349,3043357,3046785 -6 - chr12 3043442 3043493 chr12,3043442,3043493,+,(GTGGCA)n,Simple_repeat,Simple_repeat,1,51,0,3043442,3043493 +6 + chr12 3043520 3043954 chr12,3043520,3043954,-,L2a,LINE,L2,-205,3221,2749,3043315,3046702 -6 - chr12 3044289 3044309 chr12,3044289,3044309,+,(GT)n,Simple_repeat,Simple_repeat,1,20,0,3044289,3044309 +6 + chr12 3044661 3044950 chr12,3044661,3044971,+,AluSq,SINE,Alu,1,310,-3,3044661,3044974 +5 + chr12 3149797 3149866 chr12,3149707,3149875,+,MER5A,DNA,hAT-Charlie,1,168,-10,3149707,3149885 +1 + chr12 3151152 3151200 chr12,3151152,3151200,+,(TG)n,Simple_repeat,Simple_repeat,1,48,0,3151152,3151200 +6 + chr12 3173275 3173498 chr12,3173275,3173498,+,L2b,LINE,L2,2977,3205,-182,3170299,3173680 +6 + chr12 3173498 3173792 chr12,3173498,3173792,-,AluJr4,SINE,Alu,-2,310,2,3173496,3173793 -6 - chr12 3173792 3173958 chr12,3173792,3173958,+,L2b,LINE,L2,3206,3381,-6,3170587,3173964 +6 + chr12 3174019 3174056 chr12,3174019,3174075,+,MIR3,SINE,MIR,78,123,-85,3173942,3174160 +5 + chr12 3297124 3297424 chr12,3297124,3297424,+,AluJb,SINE,Alu,2,300,-12,3297123,3297436 -6 + chr12 3318888 3318945 chr12,3318888,3318945,+,(TGTGCA)n,Simple_repeat,Simple_repeat,1,59,0,3318888,3318945 +6 + chr12 3319661 3319721 chr12,3319661,3319721,+,L3,LINE,CR1,4033,4092,-7,3315629,3319728 +6 + chr12 3323558 3323794 chr12,3323558,3323794,-,MIRb,SINE,MIR,-7,261,8,3323551,3323801 -6 - chr12 3323906 3324112 chr12,3323906,3324112,-,MIRc,SINE,MIR,-31,231,19,3323875,3324130 -6 - chr12 3324786 3324996 chr12,3324786,3324996,-,MIRc,SINE,MIR,-50,212,20,3324736,3325015 -6 - chr12 3325143 3325316 chr12,3325143,3325316,+,MER104,DNA,TcMar-Tc2,1,177,-4,3325143,3325320 +6 + chr12 3367833 3367859 chr12,3367682,3367859,+,LTR16,LTR,ERVL,185,362,-76,3367498,3367935 +1 + chr12 3367903 3368033 chr12,3367903,3368033,+,L1P4d,LINE,L1,948,1074,-5861,3366956,3373894 +6 + chr12 3368033 3368104 chr12,3368033,3368104,+,LTR16,LTR,ERVL,383,449,-2,3367651,3368106 +6 + chr12 3463456 3463586 chr12,3463456,3463606,+,MIRc,SINE,MIR,2,191,-77,3463455,3463683 -1 + chr12 3610307 3610940 chr12,3609384,3610940,+,L1M4,LINE,L1,1186,2852,-3792,3608199,3614732 -5 + chr12 3610940 3611242 chr12,3610940,3611242,+,AluSq,SINE,Alu,6,305,-8,3610935,3611250 -6 + chr12 3611242 3611383 chr12,3611242,3611383,+,L1M4,LINE,L1,2853,2995,-3649,3608390,3615032 -6 + chr12 3611397 3611539 chr12,3611397,3611539,+,MamTip2,DNA,hAT-Tip100,65,208,-97,3611333,3611636 -6 + chr12 3871767 3871956 chr12,3871767,3872441,+,MER39,LTR,ERV1,1,706,-1,3871767,3872442 +4 + chr12 3899053 3899132 chr12,3898655,3899132,+,L3,LINE,CR1,3610,4099,0,3895046,3899132 +1 + chr12 3905220 3905381 chr12,3904972,3905441,+,MLT1H2,LTR,ERVL-MaLR,25,485,-4,3904948,3905445 +1 + chr12 3909884 3909960 chr12,3909689,3909960,-,MER33,DNA,hAT-Charlie,-6,318,2,3909683,3909961 -2 - chr12 4020977 4021081 chr12,4018993,4021963,+,HERVH-int,LTR,ERV1,1,2995,-4718,4018993,4026681 +1 + chr12 4026222 4026364 chr12,4026204,4026364,-,MIRb,SINE,MIR,-107,161,1,4026097,4026364 -2 - chr12 4645496 4645799 chr12,4645370,4645799,-,MER1A,DNA,hAT-Charlie,0,529,1,4645370,4645799 -1 - chr12 4700442 4701179 chr12,4700442,4701210,-,L2c,LINE,L2,-5,3382,2470,4700437,4703679 +2 - chr12 4703313 4703417 chr12,4703301,4703417,-,L1M5,LINE,L1,-3553,2593,2463,4699748,4705879 +4 - chr12 4703422 4703440 chr12,4703422,4703472,-,LTR44,LTR,ERV1,0,519,494,4703422,4703965 +2 - chr12 4704178 4704297 chr12,4704022,4704315,+,AluSx4,SINE,Alu,1,295,-15,4704022,4704330 -3 + chr12 4720007 4720102 chr12,4720007,4720593,-,LTR14C,LTR,ERVK,0,587,1,4720007,4720593 +1 - chr12 4806542 4806586 chr12,4806490,4806586,+,MER124,DNA?,DNA?,267,362,-35,4806224,4806621 -5 + chr12 4838955 4838996 chr12,4838622,4838996,-,MLT1B,LTR,ERVL-MaLR,-18,372,1,4838604,4838996 -1 - chr12 4839088 4839178 chr12,4839088,4839178,+,MamRep1151,LTR?,LTR?,533,621,-88,4838556,4839266 +6 + chr12 4839178 4839361 chr12,4839178,4839611,+,Tigger2a,DNA,TcMar-Tigger,2,432,-2,4839177,4839613 +4 + chr12 4842523 4842675 chr12,4842435,4842809,-,MSTA,LTR,ERVL-MaLR,-4,424,1,4842431,4842809 -5 - chr12 5025444 5025594 chr12,5025444,5025601,+,L2c,LINE,L2,3206,3374,-13,5022239,5025614 +5 + chr12 5234070 5234222 chr12,5234070,5234222,+,MIRc,SINE,MIR,1,165,-65,5234070,5234287 -6 + chr12 5234323 5234336 chr12,5234323,5234365,+,L2b,LINE,L2,3317,3358,-17,5231007,5234382 -2 + chr12 5239888 5239938 chr12,5239870,5239938,-,MARNA,DNA,TcMar-Mariner,-106,480,412,5239764,5240349 +4 - chr12 5243112 5243136 chr12,5243112,5243136,+,(AG)n,Simple_repeat,Simple_repeat,1,25,0,5243112,5243136 -6 + chr12 5290480 5290624 chr12,5284940,5290958,-,L1PA3,LINE,L1,0,6155,124,5284940,5291081 -1 - chr12 5316201 5316963 chr12,5316201,5316963,+,L2a,LINE,L2,2648,3426,0,5313554,5316963 +6 + chr12 5317874 5317985 chr12,5317874,5317985,-,MER103C,DNA,hAT-Charlie,-117,180,66,5317757,5318050 -6 - chr12 5318040 5318192 chr12,5318040,5318192,+,MER20B,DNA,hAT-Charlie,43,202,-17,5317998,5318209 +6 + chr12 5318238 5318379 chr12,5318238,5318379,-,MIR3,SINE,MIR,-58,150,5,5318180,5318383 -6 - chr12 5318546 5318777 chr12,5318546,5318777,-,MIRb,SINE,MIR,-6,262,23,5318540,5318799 -6 - chr12 5319055 5319231 chr12,5319055,5319231,-,MLT1O,LTR,ERVL-MaLR,-321,221,53,5318734,5319283 -6 - chr12 5319317 5319347 chr12,5319317,5319400,+,L1MA5,LINE,L1,2994,3063,-3080,5316324,5322480 +5 + chr12 5366051 5366210 chr12,5366051,5366210,-,L1PB3,LINE,L1,-4,6150,5996,5366047,5372205 +6 - chr12 5366340 5366743 chr12,5366340,5366743,+,L1PA7,LINE,L1,5769,6152,-2,5360572,5366745 -6 + chr12 5366794 5366940 chr12,5366794,5366940,-,L2c,LINE,L2,-38,3349,3192,5366756,5370131 +6 - chr12 5377967 5378078 chr12,5377967,5378078,+,MIR3,SINE,MIR,17,127,-81,5377951,5378159 +6 + chr12 5383615 5383653 chr12,5383615,5383686,-,MIR3,SINE,MIR,-49,159,87,5383566,5383772 -5 - chr12 5404162 5404299 chr12,5404077,5404484,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,5404075,5404484 -3 - chr12 5405618 5405673 chr12,5405600,5405673,-,L2b,LINE,L2,-1,3374,3303,5405599,5408975 -2 - chr12 5406128 5406284 chr12,5406128,5406284,-,MIRb,SINE,MIR,-37,231,41,5406091,5406324 -6 - chr12 5406541 5406651 chr12,5406541,5406697,+,Charlie23a,DNA,hAT-Charlie,109,274,-65,5406433,5406762 +5 + chr12 6155049 6155117 chr12,6155049,6155117,-,MIRb,SINE,MIR,-138,130,62,6154911,6155178 +6 - chr12 6157559 6157666 chr12,6157360,6157761,+,MER63B,DNA,hAT-Blackjack,24,436,0,6157337,6157761 -3 + chr12 6160497 6160690 chr12,6159296,6160690,+,LTR12C,LTR,ERV1,3,1579,0,6159294,6160690 -4 + chr12 6160690 6160719 chr12,6160690,6161178,-,L2a,LINE,L2,-315,3111,2542,6160375,6163719 +1 - chr12 6394229 6394328 chr12,6394158,6394555,+,L1M3b,LINE,L1,1,404,-5877,6394158,6400432 +3 + chr12 6394507 6394555 chr12,6394158,6394555,+,L1M3b,LINE,L1,1,404,-5877,6394158,6400432 +2 + chr12 6394827 6395095 chr12,6394827,6395095,+,MLT1L,LTR,ERVL-MaLR,307,583,-27,6394521,6395122 +6 + chr12 6395112 6395345 chr12,6395112,6395345,-,L1ME4b,LINE,L1,0,892,662,6395112,6396006 -6 - chr12 6395380 6395531 chr12,6395380,6395531,+,MER44C,DNA,TcMar-Tigger,13,163,-570,6395368,6396101 +6 + chr12 6395531 6396148 chr12,6395531,6396209,+,LTR35B,LTR,ERV1,1,605,0,6395531,6396209 +5 + chr12 6439241 6439330 chr12,6439241,6439330,+,L1MEd,LINE,L1,2678,2773,-3373,6436564,6442703 -6 + chr12 6439330 6439676 chr12,6439330,6439808,-,MLT1D,LTR,ERVL-MaLR,0,505,3,6439330,6439810 +2 - chr12 6446961 6447116 chr12,6446810,6447116,+,AluJb,SINE,Alu,9,304,-8,6446802,6447124 -4 + chr12 6447478 6447516 chr12,6447478,6447516,+,MIR3,SINE,MIR,109,146,-62,6447370,6447578 -6 + chr12 6447615 6447634 chr12,6447615,6447634,+,(TTGTT)n,Simple_repeat,Simple_repeat,1,18,0,6447615,6447634 -5 + chr12 6447634 6447876 chr12,6447634,6447876,-,L1PA5,LINE,L1,-1,6153,5912,6447633,6453787 +5 - chr12 6448640 6448785 chr12,6448498,6448785,+,AluSc8,SINE,Alu,16,304,-7,6448483,6448792 -1 + chr12 6450398 6450431 chr12,6450398,6450431,+,(TACCCC)n,Simple_repeat,Simple_repeat,1,33,0,6450398,6450431 -5 + chr12 6466828 6467135 chr12,6466828,6467180,+,THE1A,LTR,ERVL-MaLR,1,355,0,6466828,6467180 +5 + chr12 6532290 6532410 chr12,6532194,6532410,+,MER20,DNA,hAT-Charlie,1,219,0,6532194,6532410 -5 + chr12 6543504 6543684 chr12,6543264,6543684,+,MER1A,DNA,hAT-Charlie,1,417,-112,6543264,6543796 +1 + chr12 6543684 6543862 chr12,6543684,6543983,+,AluSp,SINE,Alu,1,301,-12,6543684,6543995 +4 + chr12 6583970 6584032 chr12,6583970,6584032,+,L1ME4b,LINE,L1,464,525,-367,6583507,6584399 +6 + chr12 6584032 6584215 chr12,6584032,6584215,+,MER2,DNA,TcMar-Tigger,1,196,-149,6584032,6584364 +6 + chr12 6584263 6584410 chr12,6584263,6584410,+,L1ME4b,LINE,L1,694,839,-53,6583570,6584463 +6 + chr12 6584410 6584683 chr12,6584410,6584683,-,AluJb,SINE,Alu,-23,289,1,6584387,6584683 -6 - chr12 6584683 6584729 chr12,6584683,6584729,+,L1ME4b,LINE,L1,840,888,-4,6583844,6584733 +6 + chr12 6666648 6666664 chr12,6666634,6666664,+,(A)n,Simple_repeat,Simple_repeat,1,30,0,6666634,6666664 +1 + chr12 6666802 6666838 chr12,6666802,6666838,+,(TA)n,Simple_repeat,Simple_repeat,1,37,0,6666802,6666838 +6 + chr12 6667898 6667947 chr12,6667898,6667947,+,(GCT)n,Simple_repeat,Simple_repeat,1,49,0,6667898,6667947 +5 + chr12 6667959 6668029 chr12,6667959,6668029,+,(GGCCTG)n,Simple_repeat,Simple_repeat,1,70,0,6667959,6668029 +1 + chr12 6668030 6668067 chr12,6668030,6668067,+,(CTG)n,Simple_repeat,Simple_repeat,1,37,0,6668030,6668067 +6 + chr12 6723302 6723355 chr12,6723302,6723355,+,MIRc,SINE,MIR,98,150,-118,6723205,6723473 +6 + chr12 6723463 6723553 chr12,6723463,6723553,+,MIRb,SINE,MIR,168,265,-3,6723296,6723556 +6 + chr12 6742985 6742997 chr12,6742880,6742997,+,MIR3,SINE,MIR,47,167,-41,6742834,6743038 +1 + chr12 6743082 6743134 chr12,6743082,6743134,+,L3,LINE,CR1,4038,4086,-13,6739045,6743147 +6 + chr12 6743326 6743641 chr12,6743326,6743690,+,THE1B,LTR,ERVL-MaLR,1,364,0,6743326,6743690 +5 + chr12 6899861 6899974 chr12,6899861,6899974,+,AluJo,SINE,Alu,129,240,-72,6899733,6900046 +6 + chr12 6899978 6900212 chr12,6899978,6900402,+,MER66A,LTR,ERV1,27,478,0,6899952,6900402 +5 + chr12 6943816 6943878 chr12,6943816,6943878,+,U7,snRNA,snRNA,2,63,0,6943815,6943878 -6 + chr12 7108918 7108947 chr12,7108918,7108947,+,(CTG)n,Simple_repeat,Simple_repeat,1,30,0,7108918,7108947 +4 + chr12 7111077 7111409 chr12,7111077,7111409,+,L1MEf,LINE,L1,1239,1594,-4606,7109839,7116015 +6 + chr12 7111409 7111556 chr12,7111409,7111556,+,AluJb,SINE,Alu,139,285,-27,7111271,7111583 +6 + chr12 7111556 7111606 chr12,7111556,7111739,+,L1MEf,LINE,L1,1595,1792,-4408,7109962,7116147 +5 + chr12 7112007 7112064 chr12,7111739,7112252,+,MER1A,DNA,hAT-Charlie,1,529,0,7111739,7112252 +3 + chr12 7115130 7115194 chr12,7114990,7115194,+,L2b,LINE,L2,3089,3325,-50,7111902,7115244 +2 + chr12 7115684 7116077 chr12,7115684,7116077,-,MSTA,LTR,ERVL-MaLR,0,428,1,7115684,7116077 -5 - chr12 7115736 7116077 chr12,7115684,7116077,-,MSTA,LTR,ERVL-MaLR,0,428,1,7115684,7116077 +5 - chr12 7116545 7116639 chr12,7116545,7116639,+,LTR104_Mam,LTR,Gypsy,697,802,-707,7115849,7117346 +6 + chr12 7116888 7117390 chr12,7116888,7117390,-,MLT1F,LTR,ERVL-MaLR,-6,542,1,7116882,7117390 -6 - chr12 7118380 7118432 chr12,7118380,7118432,-,MIR,SINE,MIR,-132,130,79,7118248,7118510 -6 - chr12 7118899 7118939 chr12,7118896,7118939,+,GA-rich,Low_complexity,Low_complexity,1,43,0,7118896,7118939 +2 + chr12 7120751 7121027 chr12,7120751,7121057,+,AluSz,SINE,Alu,9,312,0,7120743,7121057 +5 + chr12 7166674 7166789 chr12,7166671,7167062,-,MLT1A0,LTR,ERVL-MaLR,-55,373,1,7166616,7167062 +5 - chr12 7169785 7169927 chr12,7168488,7169948,+,MER66-int,LTR,ERV1,647,2169,-4507,7167842,7174455 -5 + chr12 7174614 7174681 chr12,7174505,7174791,-,LTR105_Mam,LTR,ERVL,-336,264,1,7174169,7174791 +3 - chr12 8080658 8080974 chr12,8080658,8080974,-,L1ME3G,LINE,L1,-381,543,243,8080277,8081216 +6 - chr12 8081413 8081488 chr12,8081413,8081488,+,MIRc,SINE,MIR,15,88,-180,8081399,8081668 -6 + chr12 8193520 8193647 chr12,8192319,8193647,-,L1PA10,LINE,L1,-1111,5035,3697,8191208,8197343 -1 - chr12 8195591 8195652 chr12,8195591,8195722,+,(AAT)n,Simple_repeat,Simple_repeat,1,131,0,8195591,8195722 +5 + chr12 8200247 8200308 chr12,8200247,8200308,+,(TTCT)n,Simple_repeat,Simple_repeat,1,62,0,8200247,8200308 +6 + chr12 8204058 8204306 chr12,8204037,8204306,-,AluSx3,SINE,Alu,-15,296,23,8204022,8204328 -5 - chr12 8204306 8204347 chr12,8204306,8204347,-,FLAM_C,SINE,Alu,-79,54,14,8204227,8204360 -6 - chr12 8207048 8207367 chr12,8207048,8207367,-,L1MA10,LINE,L1,-17,6317,5987,8207031,8213353 -6 - chr12 8215868 8216151 chr12,8215868,8216167,+,AluSc,SINE,Alu,1,299,-10,8215868,8216177 +5 + chr12 8218597 8218769 chr12,8218597,8218769,-,L1MB3,LINE,L1,0,6183,6009,8218597,8224777 -6 - chr12 8220178 8221115 chr12,8220178,8221207,+,LTR5A,LTR,ERVK,1,1033,0,8220178,8221207 +5 + chr12 8235812 8235999 chr12,8235812,8236041,+,L1MD2,LINE,L1,5763,6008,-351,8230050,8236392 +1 + chr12 8237863 8238172 chr12,8237863,8238172,+,AluSx,SINE,Alu,1,312,0,8237863,8238172 +6 + chr12 8295986 8296270 chr12,8295961,8296270,-,AluJo,SINE,Alu,-8,304,1,8295953,8296270 +5 - chr12 8296660 8296880 chr12,8296660,8296880,+,MER20,DNA,hAT-Charlie,1,219,0,8296660,8296880 -6 + chr12 8297027 8297122 chr12,8297027,8297122,-,MER91C,DNA,hAT-Tip100,-15,125,22,8297012,8297143 +6 - chr12 8321876 8322088 chr12,8321177,8324368,-,HERVS71-int,LTR,ERV1,-5742,3236,4,8315435,8324371 -1 - chr12 8323553 8323724 chr12,8321177,8324368,-,HERVS71-int,LTR,ERV1,-5742,3236,4,8315435,8324371 -1 - chr12 8322861 8323108 chr12,8321177,8324368,-,HERVS71-int,LTR,ERV1,-5742,3236,4,8315435,8324371 -1 - chr12 8329397 8329511 chr12,8329362,8329511,+,L2b,LINE,L2,3277,3425,-1,8326086,8329512 +2 + chr12 8371399 8371440 chr12,8371399,8371466,-,L2c,LINE,L2,-79,3308,3241,8371320,8374706 +2 - chr12 8374417 8374510 chr12,8374359,8374510,-,MIRc,SINE,MIR,-3,265,110,8374356,8374619 +4 - chr12 8384121 8384421 chr12,8384121,8384425,-,AluSx,SINE,Alu,-8,304,3,8384113,8384427 +2 - chr12 8386763 8386953 chr12,8386726,8386953,+,MER20,DNA,hAT-Charlie,1,216,-3,8386726,8386956 -4 + chr12 8548361 8548378 chr12,8548204,8548378,+,MLT1J1,LTR,ERVL-MaLR,265,433,-11,8547940,8548389 -5 + chr12 8552029 8552106 chr12,8552029,8552106,+,MIRb,SINE,MIR,2,83,-185,8552028,8552291 -6 + chr12 8567494 8567524 chr12,8566973,8567524,-,MER52-int,LTR,ERV1,-6527,564,2,8560446,8567525 +4 - chr12 8567561 8567613 chr12,8567561,8568746,-,MER52C,LTR,ERV1,-99,1179,1,8567462,8568746 +1 - chr12 8631545 8632032 chr12,8630699,8632032,+,L1PA8,LINE,L1,4830,6172,0,8625870,8632032 -5 + chr12 8668629 8668935 chr12,8668440,8668935,+,MLT1F2,LTR,ERVL-MaLR,48,558,-2,8668393,8668937 +2 + chr12 8788257 8788668 chr12,8787082,8788668,+,LTR12C,LTR,ERV1,2,1579,0,8787081,8788668 +1 + chr12 8788668 8788786 chr12,8788668,8793938,+,HERV9NC-int,LTR,ERV1,1,5284,-834,8788668,8794772 +4 + chr12 8790000 8790263 chr12,8788668,8793938,+,HERV9NC-int,LTR,ERV1,1,5284,-834,8788668,8794772 +3 + chr12 8794305 8794541 chr12,8793934,8794541,+,HERV9NC-int,LTR,ERV1,5509,6118,0,8788426,8794541 +5 + chr12 8794542 8795789 chr12,8794542,8796127,+,LTR12C,LTR,ERV1,3,1579,0,8794540,8796127 +5 + chr12 8819966 8820073 chr12,8819966,8820158,-,AluJr,SINE,Alu,-11,301,114,8819955,8820271 +2 - chr12 8820586 8820713 chr12,8820429,8820729,+,AluY,SINE,Alu,1,300,-11,8820429,8820740 -1 + chr12 8987177 8987481 chr12,8987177,8987572,+,MLT1B,LTR,ERVL-MaLR,1,390,0,8987177,8987572 -2 + chr12 9058193 9058302 chr12,9058193,9058302,+,(TATC)n,Simple_repeat,Simple_repeat,1,114,0,9058193,9058302 -6 + chr12 9064268 9064279 chr12,9064133,9064279,+,MIR,SINE,MIR,3,174,-94,9064131,9064373 -4 + chr12 9064279 9064729 chr12,9064279,9064729,+,MER52D,LTR,ERV1,5,488,-1635,9064275,9066364 -6 + chr12 9065177 9065228 chr12,9065173,9066669,+,MER52D,LTR,ERV1,490,2121,-2,9064684,9066671 +1 + chr12 9065826 9066060 chr12,9065173,9066669,+,MER52D,LTR,ERV1,490,2121,-2,9064684,9066671 +1 + chr12 9066156 9066669 chr12,9065173,9066669,+,MER52D,LTR,ERV1,490,2121,-2,9064684,9066671 +1 + chr12 9240107 9240176 chr12,9240107,9240176,+,(TCATCT)n,Simple_repeat,Simple_repeat,1,72,0,9240107,9240176 +6 + chr12 9240407 9240439 chr12,9240407,9240439,+,(CGG)n,Simple_repeat,Simple_repeat,1,32,0,9240407,9240439 +6 + chr12 9242273 9242311 chr12,9242273,9242311,+,(CTCC)n,Simple_repeat,Simple_repeat,1,38,0,9242273,9242311 +6 + chr12 9242294 9242309 chr12,9242294,9242309,+,(TCCTT)n,Simple_repeat,Simple_repeat,1,33,-76,9242294,9242385 +6 + chr12 9242309 9242362 chr12,9242309,9242362,+,(CTTT)n,Simple_repeat,Simple_repeat,1,54,0,9242309,9242362 +6 + chr12 9242362 9242393 chr12,9242362,9242393,+,(TCCTT)n,Simple_repeat,Simple_repeat,34,109,0,9242329,9242393 +6 + chr12 9242998 9243048 chr12,9242998,9243048,+,L1PA16,LINE,L1,6117,6166,0,9236882,9243048 +6 + chr12 9367776 9367854 chr12,9367776,9367854,+,L2c,LINE,L2,3301,3387,0,9364476,9367854 +6 + chr12 9368161 9368295 chr12,9368161,9368295,+,MIRb,SINE,MIR,4,149,-119,9368158,9368414 +6 + chr12 9368299 9368388 chr12,9368299,9368388,-,MIRb,SINE,MIR,-151,117,23,9368148,9368410 -6 - chr12 9368944 9369031 chr12,9368944,9369031,-,MamRTE1,LINE,RTE-BovB,-461,3351,3263,9368483,9372293 -6 - chr12 9375858 9376086 chr12,9375688,9376112,+,MLT1D,LTR,ERVL-MaLR,1,453,-52,9375688,9376164 +3 + chr12 9394531 9394657 chr12,9394362,9394796,+,L1MD,LINE,L1,3784,4222,-1924,9390579,9396720 +3 + chr12 9395836 9396245 chr12,9395836,9396245,-,MLT1C,LTR,ERVL-MaLR,0,467,53,9395836,9396297 -6 - chr12 9396834 9396845 chr12,9396834,9396845,+,(CTTTCT)n,Simple_repeat,Simple_repeat,1,53,0,9396834,9396845 +6 + chr12 9396845 9396887 chr12,9396845,9396887,+,(TC)n,Simple_repeat,Simple_repeat,1,45,0,9396845,9396887 +6 + chr12 9397253 9397344 chr12,9397253,9397344,+,(TA)n,Simple_repeat,Simple_repeat,1,91,0,9397253,9397344 +6 + chr12 9647014 9647376 chr12,9646924,9647682,-,LTR19C,LTR,ERV1,0,779,1,9646924,9647682 +5 - chr12 9657048 9657070 chr12,9657048,9657157,+,THE1D-int,LTR,ERVL-MaLR,1051,1159,-472,9655998,9657629 +5 + chr12 9658567 9658605 chr12,9657568,9658605,+,MER101-int,LTR,ERV1,3221,4297,-2342,9654348,9660947 +1 + chr12 9658605 9658629 chr12,9658605,9658901,+,AluSz6,SINE,Alu,1,297,-15,9658605,9658916 +4 + chr12 9659641 9659704 chr12,9659400,9659704,-,AluSx,SINE,Alu,-16,296,1,9659384,9659704 -2 - chr12 9659717 9660236 chr12,9659717,9660236,+,MER101-int,LTR,ERV1,6055,6582,-57,9653663,9660293 +6 + chr12 9660256 9660579 chr12,9660256,9660579,+,MER101,LTR,ERV1,24,368,-106,9660233,9660685 +6 + chr12 9660821 9661371 chr12,9660821,9661371,-,MER41D,LTR,ERV1,0,557,1,9660821,9661371 -6 - chr12 9661586 9662060 chr12,9661586,9662060,-,L1PA16,LINE,L1,-1,6165,5693,9661585,9667752 -6 - chr12 9662061 9662085 chr12,9662061,9662390,+,LTR45B,LTR,ERV1,24,355,-134,9662038,9662524 +5 + chr12 9708872 9709350 chr12,9707769,9709787,+,HUERS-P2-int,LTR,ERV1,207,2260,-828,9707563,9710615 +5 + chr12 9867027 9867266 chr12,9866674,9867393,+,MamGypLTR1a,LTR,Gypsy,68,782,-2,9866607,9867395 +1 + chr12 9869538 9869722 chr12,9869538,9869722,-,MER105,DNA,hAT-Charlie,-4,199,5,9869534,9869726 -6 - chr12 9936613 9936764 chr12,9936613,9936764,-,LTR85a,LTR,Gypsy?,-6,696,545,9936607,9937308 +6 - chr12 9948137 9948960 chr12,9947923,9948960,+,L1MB2,LINE,L1,5125,6164,-7,9942799,9948967 -5 + chr12 9949268 9949359 chr12,9949268,9949359,+,LTR78,LTR,ERV1,1036,1127,-177,9948233,9949536 -6 + chr12 9950902 9950915 chr12,9950772,9950915,+,MER53,DNA,hAT,8,158,-35,9950765,9950950 -4 + chr12 9950941 9951147 chr12,9950941,9951147,+,LOR1b,LTR,ERV1,254,461,0,9950688,9951147 -6 + chr12 9951147 9951552 chr12,9951147,9951552,+,LOR1-int,LTR,ERV1,1,421,-7699,9951147,9959251 -6 + chr12 9951519 9951756 chr12,9951519,9951756,+,LOR1-int,LTR,ERV1,203,450,-7670,9951317,9959426 -6 + chr12 9951833 9951879 chr12,9951833,9951879,+,5S,rRNA,rRNA,2,49,-72,9951832,9951951 -6 + chr12 9951911 9952075 chr12,9951911,9952075,+,LOR1-int,LTR,ERV1,524,700,-7420,9951388,9959495 -6 + chr12 9952550 9953336 chr12,9952213,9953454,+,SVA_F,Retroposon,SVA,57,857,-518,9952157,9953972 -1 + chr12 9953096 9953336 chr12,9953096,9954225,+,SVA_F,Retroposon,SVA,422,1375,0,9952675,9954225 -1 + chr12 10030543 10030561 chr12,10030483,10030561,-,L1MC2,LINE,L1,-671,5673,5580,10029812,10036140 +4 - chr12 10030563 10030606 chr12,10030563,10030691,-,MER52C,LTR,ERV1,-793,485,354,10029770,10031044 +1 - chr12 10214656 10214761 chr12,10214656,10214805,-,MIR,SINE,MIR,-118,144,1,10214538,10214805 +1 - chr12 10332975 10333063 chr12,10332975,10333428,-,LTR7,LTR,ERV1,-2,448,1,10332973,10333428 +2 - chr12 10336112 10336309 chr12,10335256,10338190,-,HERVH-int,LTR,ERV1,-4726,2987,1,10330530,10338190 +3 - chr12 10338045 10338190 chr12,10335256,10338190,-,HERVH-int,LTR,ERV1,-4726,2987,1,10330530,10338190 +4 - chr12 10338192 10338292 chr12,10338192,10338643,-,LTR7,LTR,ERV1,-2,448,1,10338190,10338643 +1 - chr12 10358464 10358563 chr12,10357568,10358570,-,L1P3,LINE,L1,-5031,1430,408,10352537,10358977 +5 - chr12 10360929 10361045 chr12,10360929,10361561,-,LTR9B,LTR,ERV1,0,644,1,10360929,10361561 +1 - chr12 10363769 10363811 chr12,10363332,10363811,+,LTR15,LTR,ERV1,1,493,0,10363332,10363811 +1 + chr12 10363811 10364033 chr12,10363811,10364665,+,HERV15-int,LTR,ERV1,1,891,-7844,10363811,10372509 +4 + chr12 10374035 10374136 chr12,10374005,10374312,-,AluSz,SINE,Alu,-4,308,1,10374001,10374312 -3 - chr12 10396247 10396507 chr12,10396247,10396507,+,AluSz,SINE,Alu,16,293,-19,10396232,10396526 +6 + chr12 10397262 10397742 chr12,10397262,10397742,+,L1M4a1,LINE,L1,71,531,-2048,10397192,10399790 +6 + chr12 10397742 10398243 chr12,10397742,10398243,-,L1MA6,LINE,L1,0,6300,5818,10397742,10404060 -6 - chr12 10398243 10398356 chr12,10398243,10398356,+,L1M4a1,LINE,L1,532,645,-1934,10397712,10400290 +6 + chr12 10398356 10398387 chr12,10398356,10398387,+,(CA)n,Simple_repeat,Simple_repeat,1,31,0,10398356,10398387 +6 + chr12 10398387 10398506 chr12,10398387,10399259,+,L1M4a1,LINE,L1,646,1728,-928,10397742,10400187 +5 + chr12 10553363 10553515 chr12,10552971,10553515,+,MER51A,LTR,ERV1,1,634,0,10552971,10553515 +1 + chr12 10557910 10558049 chr12,10557910,10558092,+,MER5A,DNA,hAT-Charlie,6,189,0,10557905,10558092 +5 + chr12 10775865 10775926 chr12,10775746,10775926,+,L2a,LINE,L2,3214,3426,0,10772533,10775926 +2 + chr12 11172230 11172470 chr12,11172230,11172470,+,HAL1ME,LINE,L1,1978,2250,-215,11170253,11172685 +6 + chr12 11172613 11172931 chr12,11172613,11172931,+,HAL1,LINE,L1,1912,2233,-274,11170702,11173205 +6 + chr12 11173783 11173845 chr12,11173783,11173845,+,L2c,LINE,L2,3274,3334,-53,11170510,11173898 +6 + chr12 11173871 11174057 chr12,11173871,11174057,+,(TA)n,Simple_repeat,Simple_repeat,1,189,0,11173871,11174057 +6 + chr12 11174261 11174366 chr12,11174261,11174366,+,L2a,LINE,L2,3310,3426,0,11170952,11174366 +6 + chr12 11174765 11174917 chr12,11174765,11174917,-,MIRb,SINE,MIR,-15,253,93,11174750,11175009 -6 - chr12 11175704 11176020 chr12,11175704,11176056,+,MLT1A0,LTR,ERVL-MaLR,1,360,-5,11175704,11176061 +5 + chr12 11212219 11212287 chr12,11212187,11212287,-,L1MC,LINE,L1,-1427,4719,4616,11210760,11216902 -1 - chr12 11212291 11212556 chr12,11212291,11212556,+,L1MC3,LINE,L1,5942,6212,-1573,11206350,11214129 +6 + chr12 11212568 11212599 chr12,11212568,11212599,+,(TTTATT)n,Simple_repeat,Simple_repeat,1,32,0,11212568,11212599 +6 + chr12 11212609 11212659 chr12,11212609,11214131,-,L1PA3,LINE,L1,-4,6151,4628,11212605,11218758 -4 - chr12 11251319 11251346 chr12,11250631,11251346,-,L1PA8,LINE,L1,-3,6169,5492,11250628,11256837 -2 - chr12 11251346 11251389 chr12,11251346,11251438,-,L1P3,LINE,L1,-1570,4576,4475,11249776,11255912 -5 - chr12 11399381 11399416 chr12,11399330,11399416,-,LTR84a,LTR,ERVL,-234,523,432,11399096,11399847 +5 - chr12 11399850 11400003 chr12,11399745,11400004,+,MLT1G1,LTR,ERVL-MaLR,7,285,-294,11399739,11400298 -3 + chr12 11401485 11401523 chr12,11401466,11401527,+,Arthur1A,DNA,hAT-Tip100,20,80,-97,11401447,11401624 -5 + chr12 11436303 11436320 chr12,11436189,11436522,-,L3,LINE,CR1,-1,4098,3742,11436188,11440263 +1 - chr12 11486049 11486151 chr12,11485732,11486291,+,MER4B,LTR,ERV1,2,610,0,11485731,11486291 -3 + chr12 11486564 11486668 chr12,11486291,11486668,-,MER110A,LTR,ERV1,-51,417,9,11486240,11486676 +1 - chr12 11541395 11541526 chr12,11541372,11541703,-,MLT1A,LTR,ERVL-MaLR,-25,349,1,11541347,11541703 +5 - chr12 11548030 11548360 chr12,11547109,11548392,+,LTR12C,LTR,ERV1,2,1579,0,11547108,11548392 +1 + chr12 11549590 11549721 chr12,11549557,11549880,-,AluSg,SINE,Alu,-1,309,1,11549556,11549880 -3 - chr12 11552580 11552693 chr12,11552521,11552711,-,AluSx,SINE,Alu,0,312,140,11552521,11552850 -3 - chr12 11553918 11553935 chr12,11553918,11553935,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,11553918,11553935 +6 + chr12 11553942 11554064 chr12,11553942,11554064,+,MIR3,SINE,MIR,9,141,-67,11553934,11554131 +6 + chr12 11555255 11555367 chr12,11555227,11555367,-,AluJr,SINE,Alu,-4,308,173,11555223,11555539 -2 - chr12 11556669 11556745 chr12,11556669,11556745,+,(AAAG)n,Simple_repeat,Simple_repeat,1,78,0,11556669,11556745 +6 + chr12 11556748 11556864 chr12,11556748,11556864,-,X6A_LINE,LINE,CR1,-144,936,830,11556604,11557693 -6 - chr12 11563895 11564132 chr12,11563895,11564132,+,MLT1J,LTR,ERVL-MaLR,279,512,0,11563617,11564132 +6 + chr12 11590258 11590292 chr12,11590258,11590292,+,(ATGGAAG)n,Simple_repeat,Simple_repeat,1,36,0,11590258,11590292 +6 + chr12 12355625 12355817 chr12,12355625,12355817,+,L2c,LINE,L2,3052,3256,-131,12352574,12355948 -6 + chr12 12356013 12356317 chr12,12356013,12356317,-,AluY,SINE,Alu,-8,303,1,12356005,12356317 +6 - chr12 12491236 12491349 chr12,12491215,12491349,-,FLAM_A,SINE,Alu,-8,134,1,12491207,12491349 -2 - chr12 12648939 12649171 chr12,12647568,12649171,-,MSTA-int,LTR,ERVL-MaLR,0,1631,1,12647568,12649171 -1 - chr12 12649171 12649544 chr12,12649171,12649544,-,MSTA,LTR,ERVL-MaLR,0,428,1,12649171,12649544 -6 - chr12 12723297 12723311 chr12,12723287,12723311,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,12723287,12723311 -5 + chr12 12927726 12927803 chr12,12927677,12927956,+,MER50,LTR,ERV1,355,631,-103,12927323,12928059 +1 + chr12 12947035 12947103 chr12,12947007,12947103,-,L3b,LINE,CR1,-380,4852,4754,12946627,12951856 -2 - chr12 12952738 12952831 chr12,12952560,12952853,-,AluSg,SINE,Alu,-8,302,1,12952552,12952853 -5 - chr12 12953891 12953939 chr12,12953891,12953939,+,(ATAA)n,Simple_repeat,Simple_repeat,1,51,0,12953891,12953939 +6 + chr12 12962300 12962401 chr12,12961890,12962401,+,Charlie9,DNA,hAT-Charlie,2203,2749,-8,12959688,12962409 +1 + chr12 12963278 12963299 chr12,12962987,12963299,-,AluSz,SINE,Alu,0,312,1,12962987,12963299 -2 - chr12 12963457 12963539 chr12,12963457,12963611,-,L2b,LINE,L2,-1,3374,3218,12963456,12966828 -5 - chr12 12966759 12966897 chr12,12966757,12967056,+,AluSz6,SINE,Alu,1,289,-23,12966757,12967079 +3 + chr12 12983796 12984645 chr12,12983796,12984645,+,L1MC5,LINE,L1,8033,8899,-405,12975764,12985050 +5 + chr12 13000451 13000480 chr12,13000446,13000480,+,(GCAGCAGT)n,Simple_repeat,Simple_repeat,1,34,0,13000446,13000480 +1 + chr12 13019512 13019925 chr12,13019295,13019925,-,L1M7,LINE,L1,-5542,769,109,13013753,13020033 -2 - chr12 13019968 13020444 chr12,13019968,13020514,+,MLT1G,LTR,ERVL-MaLR,19,589,-2,13019950,13020516 +4 + chr12 13022014 13022161 chr12,13022003,13023267,-,HERV16-int,LTR,ERVL,-2625,2371,991,13019378,13024257 -3 - chr12 13040052 13040276 chr12,13040052,13040276,+,LTR88b,LTR,Gypsy?,1,221,-616,13040052,13040892 +6 + chr12 13040350 13040679 chr12,13040350,13040729,+,MLT1J2,LTR,ERVL-MaLR,1,439,-9,13040350,13040738 +5 + chr12 13371089 13371174 chr12,13370561,13371174,-,L1MA5,LINE,L1,0,6300,5728,13370561,13376901 +5 - chr12 13371174 13371268 chr12,13371174,13371268,+,MIRb,SINE,MIR,163,263,-5,13371012,13371273 -6 + chr12 13371305 13371458 chr12,13371305,13371458,-,L2c,LINE,L2,-42,3345,3183,13371263,13374640 +6 - chr12 13371475 13371644 chr12,13371475,13371644,-,MIR3,SINE,MIR,-13,195,20,13371462,13371663 +6 - chr12 13372324 13372440 chr12,13372324,13372440,-,L1MA3,LINE,L1,-21,6284,6169,13372303,13378608 +6 - chr12 13375527 13375686 chr12,13375339,13375686,+,MLT1J1,LTR,ERVL-MaLR,58,403,-41,13375282,13375727 -5 + chr12 13376083 13376246 chr12,13376083,13376246,-,Charlie15a,DNA,hAT-Charlie,0,224,45,13376083,13376290 +5 - chr12 13376267 13376410 chr12,13376267,13376410,-,MIRc,SINE,MIR,-48,160,13,13376219,13376422 +6 - chr12 13376413 13376430 chr12,13376413,13376888,-,MLT2B1,LTR,ERVL,0,520,1,13376413,13376888 +1 - chr12 13376514 13376711 chr12,13376413,13376888,-,MLT2B1,LTR,ERVL,0,520,1,13376413,13376888 +1 - chr12 13381925 13381951 chr12,13381731,13381951,-,MIRb,SINE,MIR,0,268,34,13381731,13381984 +4 - chr12 13530759 13530843 chr12,13530759,13530843,+,MIR1_Amn,SINE,MIR,87,166,-64,13530673,13530907 +6 + chr12 13544141 13544540 chr12,13542496,13545457,+,L2a,LINE,L2,90,3409,-17,13542407,13545474 +5 + chr12 14216590 14216731 chr12,14216543,14216731,+,LTR12F,LTR,ERV1,327,506,-13,14216217,14216744 +1 + chr12 14216759 14216793 chr12,14216759,14220395,+,HERV17-int,LTR,ERV1,1,4259,-4367,14216759,14224762 +4 + chr12 14220862 14221108 chr12,14220388,14221108,+,HERV17-int,LTR,ERV1,7898,8626,0,14212491,14221108 +2 + chr12 14530151 14530241 chr12,14529937,14530469,+,MLT1F1,LTR,ERVL-MaLR,1,567,-2,14529937,14530471 +1 + chr12 14531042 14531210 chr12,14531031,14531633,-,FordPrefect,DNA,hAT-Tip100,-39,1644,968,14530992,14532600 -3 - chr12 14665655 14665697 chr12,14665652,14665749,+,L2a,LINE,L2,3319,3425,-1,14662334,14665750 +1 + chr12 14665868 14666013 chr12,14665868,14666452,-,LTR9C,LTR,ERV1,0,666,63,14665868,14666514 -4 - chr12 14718035 14718075 chr12,14717640,14718376,-,L1MEd,LINE,L1,-1571,4575,3882,14716069,14722257 -3 - chr12 14757595 14757611 chr12,14757366,14757611,-,MLT1J,LTR,ERVL-MaLR,-29,483,239,14757337,14757849 -2 - chr12 14757821 14757963 chr12,14757821,14758124,+,AluJb,SINE,Alu,6,307,-5,14757816,14758129 +5 + chr12 14762517 14762728 chr12,14762517,14762728,-,MIRc,SINE,MIR,-31,237,5,14762486,14762732 +6 - chr12 14762879 14762961 chr12,14762879,14762961,+,L2a,LINE,L2,3303,3387,-39,14759577,14763000 -6 + chr12 14763603 14763889 chr12,14763603,14763889,+,L1MD,LINE,L1,2734,3061,-3085,14760870,14766974 -6 + chr12 14763889 14764166 chr12,14763889,14764166,-,AluJb,SINE,Alu,-25,287,1,14763864,14764166 +6 - chr12 14764166 14764392 chr12,14764166,14764392,+,L1MD,LINE,L1,3062,3296,-2850,14761105,14767242 -6 + chr12 14764400 14764694 chr12,14764400,14764694,+,AluSq2,SINE,Alu,1,302,-11,14764400,14764705 -6 + chr12 14765037 14765171 chr12,14765037,14765171,-,FLAM_C,SINE,Alu,-10,133,1,14765027,14765171 +6 - chr12 14765336 14765806 chr12,14765336,14765806,+,L1PA17,LINE,L1,5513,5982,-184,14759824,14765990 -6 + chr12 14765806 14766389 chr12,14765806,14766389,+,LTR10C,LTR,ERV1,4,591,0,14765803,14766389 -6 + chr12 14766389 14766582 chr12,14766389,14766582,+,L1PA17,LINE,L1,5983,6165,-1,14760407,14766583 -6 + chr12 14766715 14766858 chr12,14766715,14766858,+,L1MEd,LINE,L1,603,759,-6327,14766113,14773185 -6 + chr12 14766917 14767242 chr12,14766917,14767242,-,L1M5,LINE,L1,-456,5787,5437,14766461,14772678 +6 - chr12 14767242 14767529 chr12,14767242,14767529,-,AluSz6,SINE,Alu,-14,298,1,14767228,14767529 +6 - chr12 14767529 14767643 chr12,14767529,14767643,-,L1M5,LINE,L1,-807,5436,5303,14766722,14772945 +6 - chr12 14767885 14767931 chr12,14767885,14768068,+,L2c,LINE,L2,3180,3371,-16,14764706,14768084 -1 + chr12 14844556 14844708 chr12,14844556,14844789,+,MIR,SINE,MIR,13,262,0,14844544,14844789 +5 + chr12 15001833 15001906 chr12,15001699,15001916,+,L2a,LINE,L2,3168,3426,0,14998532,15001916 +1 + chr12 15005153 15005206 chr12,15005153,15005336,+,MER5A,DNA,hAT-Charlie,1,188,-1,15005153,15005337 +4 + chr12 15006361 15006683 chr12,15006222,15006687,+,L1PA11,LINE,L1,5705,6174,0,15000518,15006687 +5 + chr12 15114505 15114698 chr12,15114352,15114750,+,L1ME5,LINE,L1,5254,5680,-514,15109099,15115264 -1 + chr12 15154294 15154340 chr12,15154294,15154434,+,Tigger19a,DNA,TcMar-Tigger,88,244,-79,15154207,15154513 +4 + chr12 15781739 15782050 chr12,15781658,15782050,-,MSTC,LTR,ERVL-MaLR,0,428,1,15781658,15782050 -2 - chr12 15782094 15782120 chr12,15782094,15782210,+,Tigger2b_Pri,DNA,TcMar-Tigger,1,116,-952,15782094,15783162 +5 + chr12 15817048 15817110 chr12,15817007,15817657,+,L1PA13,LINE,L1,5496,6145,-18,15811512,15817675 -3 + chr12 15828181 15828274 chr12,15828062,15828563,+,MLT1D,LTR,ERVL-MaLR,4,505,0,15828059,15828563 -1 + chr12 16693800 16695470 chr12,16692649,16695470,+,L1MA6,LINE,L1,3365,6173,-127,16689285,16695597 +1 + chr12 16695477 16695617 chr12,16695477,16695617,+,GA-rich,Low_complexity,Low_complexity,1,141,0,16695477,16695617 +6 + chr12 16695629 16695761 chr12,16695629,16695761,+,L1MA9,LINE,L1,6179,6310,-2,16689451,16695763 +6 + chr12 17509353 17509467 chr12,17509159,17509472,-,L2b,LINE,L2,-410,2965,2643,17508749,17512114 +5 - chr12 17552767 17552891 chr12,17552682,17552958,-,MER110A,LTR,ERV1,0,491,218,17552682,17553175 +3 - chr12 17584282 17584363 chr12,17584282,17584770,+,MLT1F,LTR,ERVL-MaLR,1,546,-2,17584282,17584772 -2 + chr12 17584458 17584522 chr12,17584282,17584770,+,MLT1F,LTR,ERVL-MaLR,1,546,-2,17584282,17584772 -3 + chr12 17589331 17589383 chr12,17589331,17589408,+,AluYc,SINE,Alu,165,241,-58,17589167,17589466 +4 + chr12 17589706 17589747 chr12,17589555,17589747,-,L2,LINE,L2,-874,2545,2349,17588681,17592095 +4 - chr12 17589981 17589992 chr12,17589981,17590007,+,(A)n,Simple_repeat,Simple_repeat,1,26,0,17589981,17590007 -1 + chr12 17615229 17615452 chr12,17615229,17615452,+,MIRb,SINE,MIR,33,267,-1,17615197,17615453 +6 + chr12 18714795 18714885 chr12,18714673,18714885,+,MER20,DNA,hAT-Charlie,4,219,0,18714670,18714885 +1 + chr12 18715686 18715799 chr12,18715663,18715799,-,FRAM,SINE,Alu,-11,165,2,18715652,18715800 -3 - chr12 19147096 19147148 chr12,19147096,19147148,+,MamSINE1,SINE,tRNA-RTE,217,268,-22,19146880,19147170 +6 + chr12 19149476 19149533 chr12,19149230,19149533,+,AluY,SINE,Alu,10,311,0,19149221,19149533 +2 + chr12 19149533 19150028 chr12,19149533,19150028,-,MLT1H,LTR,ERVL-MaLR,-37,512,6,19149496,19150033 -6 - chr12 19150411 19150634 chr12,19150411,19150634,+,L2a,LINE,L2,3182,3417,-9,19147230,19150643 +6 + chr12 19150805 19151120 chr12,19150805,19151120,-,L2,LINE,L2,-2200,1219,867,19148605,19151986 -6 - chr12 19151124 19151387 chr12,19151124,19151387,-,L2,LINE,L2,-2881,538,265,19148243,19151651 -6 - chr12 19151864 19152165 chr12,19151864,19152165,-,AluY,SINE,Alu,-10,301,1,19151854,19152165 -6 - chr12 19152768 19152832 chr12,19152768,19152832,-,L1M5,LINE,L1,-573,5669,5604,19152195,19158435 -6 - chr12 19152832 19152960 chr12,19152832,19152960,-,L1M5,LINE,L1,-855,5291,5148,19151977,19158107 -6 - chr12 19152993 19153020 chr12,19152993,19153020,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,19152993,19153020 +6 + chr12 19153043 19153444 chr12,19153043,19153444,-,L1M5,LINE,L1,-1955,4191,3770,19151088,19157213 -6 - chr12 19153444 19153746 chr12,19153444,19153746,-,L1MC1,LINE,L1,-15,6318,6015,19153429,19159760 -6 - chr12 19153746 19153938 chr12,19153746,19153938,-,L1M5,LINE,L1,-2377,3769,3577,19151369,19157514 -6 - chr12 19153939 19154363 chr12,19153939,19154363,-,L1M5,LINE,L1,-3575,2571,2112,19150364,19156474 -6 - chr12 19775451 19775603 chr12,19775357,19775902,-,L1PBa1,LINE,L1,-6063,549,5,19769294,19775906 -1 - chr12 19923198 19923247 chr12,19922789,19923247,+,MSTB1,LTR,ERVL-MaLR,1,432,0,19922789,19923247 +2 + chr12 20008645 20008767 chr12,20008629,20008781,-,AluJr,SINE,Alu,-16,296,144,20008613,20008924 -3 - chr12 20009721 20009937 chr12,20009713,20010468,-,LTR12,LTR,ERV1,-2,824,1,20009711,20010468 -5 - chr12 20014988 20015028 chr12,20014988,20015117,+,MLT1O,LTR,ERVL-MaLR,54,189,-353,20014935,20015470 +4 + chr12 20019632 20019696 chr12,20019615,20019959,-,MLT1D,LTR,ERVL-MaLR,-177,328,1,20019438,20019959 -3 - chr12 20127816 20127958 chr12,20127711,20127991,-,MLT1J,LTR,ERVL-MaLR,0,512,224,20127711,20128214 +3 - chr12 20129696 20129784 chr12,20129696,20129784,+,L2a,LINE,L2,3320,3412,-14,20126377,20129798 -6 + chr12 20129803 20129813 chr12,20129803,20129832,+,(AATA)n,Simple_repeat,Simple_repeat,1,29,0,20129803,20129832 -1 + chr12 20361732 20361788 chr12,20361517,20361788,+,AmnSINE1,SINE,5S-Deu-L2,23,317,-258,20361495,20362046 -5 + chr12 21662313 21662731 chr12,21661347,21662731,+,LTR12C,LTR,ERV1,3,1579,0,21661345,21662731 +1 + chr12 21828360 21828462 chr12,21828324,21828462,-,MIRb,SINE,MIR,-14,254,97,21828310,21828558 +5 - chr12 21831079 21831194 chr12,21831055,21831306,-,AluSx,SINE,Alu,-14,298,46,21831041,21831351 -3 - chr12 21869582 21869662 chr12,21869262,21869879,+,L2a,LINE,L2,2615,3421,-5,21866648,21869884 +3 + chr12 22395088 22395305 chr12,22395063,22395305,-,L1MB2,LINE,L1,-845,5301,5156,22394218,22400460 +5 - chr12 22398007 22398075 chr12,22398007,22398202,-,MER57A-int,LTR,ERV1,-535,5652,5471,22397472,22403672 +1 - chr12 22460583 22460697 chr12,22460583,22460878,-,AluSq,SINE,Alu,-19,294,1,22460564,22460878 +2 - chr12 22463356 22463405 chr12,22463104,22463405,+,AluSx1,SINE,Alu,1,296,-16,22463104,22463421 -4 + chr12 22463405 22463666 chr12,22463405,22463666,+,MLT1A1,LTR,ERVL-MaLR,88,407,-1,22463318,22463667 -6 + chr12 22601425 22601470 chr12,22601333,22601488,-,AluSx,SINE,Alu,-18,294,140,22601315,22601627 -1 - chr12 22609248 22609515 chr12,22609248,22609515,-,Plat_L3,LINE,CR1,-1117,2469,2199,22608131,22611713 +6 - chr12 22609516 22609548 chr12,22609516,22609548,+,(AAAC)n,Simple_repeat,Simple_repeat,1,33,0,22609516,22609548 -6 + chr12 22618554 22618867 chr12,22618554,22618952,+,MER41A,LTR,ERV1,156,554,0,22618399,22618952 +5 + chr12 22638464 22638551 chr12,22638255,22638551,-,AluSz,SINE,Alu,-16,296,1,22638239,22638551 -1 - chr12 22638832 22638943 chr12,22638832,22639098,-,L1MC5a,LINE,L1,-149,2628,2355,22638683,22641452 -5 - chr12 22699859 22700056 chr12,22699796,22700056,+,MLT1A,LTR,ERVL-MaLR,117,366,-8,22699680,22700064 +1 + chr12 22742931 22743078 chr12,22742931,22743078,+,MER5A1,DNA,hAT-Charlie,9,161,-5,22742923,22743083 +6 + chr12 22859165 22859236 chr12,22858573,22859552,-,L2a,LINE,L2,0,3426,2395,22858573,22861946 -1 - chr12 22859475 22859552 chr12,22858573,22859552,-,L2a,LINE,L2,0,3426,2395,22858573,22861946 -1 - chr12 22859552 22859846 chr12,22859552,22859846,+,MER44A,DNA,TcMar-Tigger,1,335,-4,22859552,22859850 +6 + chr12 22859846 22860050 chr12,22859846,22860050,-,L2a,LINE,L2,-1025,2394,2153,22858821,22862202 -6 - chr12 22860057 22860095 chr12,22860057,22860189,+,MER5A,DNA,hAT-Charlie,1,127,-62,22860057,22860251 +4 + chr12 22869321 22869413 chr12,22869138,22869435,-,AluJb,SINE,Alu,-16,296,1,22869122,22869435 -3 - chr12 22887964 22888044 chr12,22887961,22888254,+,MLT1D,LTR,ERVL-MaLR,214,505,0,22887748,22888254 +5 + chr12 22888839 22888933 chr12,22888607,22888980,+,MSTD,LTR,ERVL-MaLR,1,396,0,22888607,22888980 +5 + chr12 22969363 22969442 chr12,22969338,22969442,-,L2b,LINE,L2,-34,3392,3242,22969304,22972683 -2 - chr12 22970986 22971094 chr12,22970986,22971104,+,MIR,SINE,MIR,122,242,-20,22970865,22971124 +5 + chr12 22972390 22972468 chr12,22972390,22972572,+,MIRb,SINE,MIR,69,268,0,22972322,22972572 +4 + chr12 23021787 23021900 chr12,23021672,23022422,+,L2,LINE,L2,20,798,-2621,23021653,23025043 +1 + chr12 23173389 23173752 chr12,23173287,23173752,+,MLT1H,LTR,ERVL-MaLR,57,489,0,23173231,23173752 +2 + chr12 23173752 23174076 chr12,23173752,23174076,+,MLT1H-int,LTR,ERVL-MaLR,1,329,-1080,23173752,23175156 +6 + chr12 23174076 23174123 chr12,23174076,23174436,-,THE1C,LTR,ERVL-MaLR,0,375,1,23174076,23174436 -5 - chr12 23175642 23175708 chr12,23175499,23175708,+,MLT1H,LTR,ERVL-MaLR,22,241,-308,23175478,23176016 +1 + chr12 23175724 23175860 chr12,23175724,23175932,+,MLT1H,LTR,ERVL-MaLR,286,578,-1,23175439,23175933 +4 + chr12 23181334 23181410 chr12,23181210,23181410,-,L1ME4a,LINE,L1,-12,6112,5936,23181198,23187345 +5 - chr12 23181979 23182372 chr12,23181979,23182372,+,MLT1H2,LTR,ERVL-MaLR,78,473,-76,23181902,23182448 -6 + chr12 23182376 23182623 chr12,23182376,23182669,+,AluSc8,SINE,Alu,7,300,-11,23182370,23182680 -2 + chr12 23188236 23188431 chr12,23188236,23188431,+,MLT1F,LTR,ERVL-MaLR,371,613,-11,23187866,23188442 +6 + chr12 23188603 23188935 chr12,23188603,23188935,-,MER102b,DNA,hAT-Charlie,-2,339,3,23188601,23188937 -6 - chr12 23251461 23251499 chr12,23251377,23251734,-,THE1B,LTR,ERVL-MaLR,0,364,1,23251377,23251734 +1 - chr12 23638240 23638487 chr12,23638240,23638541,+,LTR78B,LTR,ERV1,976,1294,-2,23637265,23638543 +5 + chr12 24331286 24331396 chr12,24331237,24331423,+,HAL1ME,LINE,L1,705,897,-1610,24330533,24333033 -5 + chr12 24357338 24357353 chr12,24357293,24357353,-,L2a,LINE,L2,-3,3423,3363,24357290,24360715 +4 - chr12 24368549 24368639 chr12,24368549,24368674,+,L2b,LINE,L2,3248,3372,-3,24365302,24368677 -2 + chr12 24562448 24562498 chr12,24562448,24562498,+,(TG)n,Simple_repeat,Simple_repeat,1,51,0,24562448,24562498 -1 + chr12 24562498 24562550 chr12,24562498,24562550,+,(TCGC)n,Simple_repeat,Simple_repeat,3,55,0,24562496,24562550 -1 + chr12 24567092 24567208 chr12,24567092,24567401,+,AluSx3,SINE,Alu,1,309,-2,24567092,24567403 -2 + chr12 24571534 24571657 chr12,24571361,24571685,+,AluJo,SINE,Alu,1,309,-3,24571361,24571688 -3 + chr12 24582956 24583118 chr12,24582699,24583118,-,Tigger2a,DNA,TcMar-Tigger,0,434,23,24582699,24583140 +4 - chr12 24583213 24583232 chr12,24583213,24583232,+,(AGA)n,Simple_repeat,Simple_repeat,1,19,0,24583213,24583232 -6 + chr12 24767129 24767226 chr12,24767052,24767690,+,Tigger17a,DNA,TcMar-Tigger,2,654,0,24767051,24767690 +3 + chr12 24773971 24774022 chr12,24773908,24774022,-,MIRc,SINE,MIR,-20,248,133,24773888,24774154 -2 - chr12 24774177 24774213 chr12,24774177,24774255,+,MIRb,SINE,MIR,8,84,-184,24774170,24774439 +5 + chr12 24904202 24904502 chr12,24904202,24904502,-,AluSz6,SINE,Alu,-12,300,1,24904190,24904502 -6 - chr12 24904614 24904681 chr12,24904614,24904691,+,L2,LINE,L2,2291,2376,-1043,24902324,24905734 +5 + chr12 24957127 24957240 chr12,24957105,24957403,-,AluSp,SINE,Alu,-16,297,4,24957089,24957406 -3 - chr12 24957934 24958174 chr12,24957904,24958174,+,MLT1L,LTR,ERVL-MaLR,311,597,-13,24957594,24958187 +2 + chr12 24960054 24960158 chr12,24960053,24960982,+,L1M1,LINE,L1,13,921,-6644,24960041,24967626 +5 + chr12 25097395 25097541 chr12,25097318,25097541,-,L1ME4a,LINE,L1,-217,5907,5675,25097101,25103215 +4 - chr12 25100880 25100980 chr12,25100475,25101136,-,HAL1,LINE,L1,-1784,723,2,25098691,25101137 +1 - chr12 25103481 25103639 chr12,25103481,25103639,+,L1M5,LINE,L1,5316,5485,-638,25098166,25104277 -6 + chr12 25103647 25103729 chr12,25103647,25103729,+,L1M5,LINE,L1,5540,5629,-495,25098108,25104224 -6 + chr12 25225286 25225335 chr12,25225286,25225335,+,(TA)n,Simple_repeat,Simple_repeat,1,49,0,25225286,25225335 +6 + chr12 25386117 25386196 chr12,25386117,25386196,+,(CGC)n,Simple_repeat,Simple_repeat,1,83,0,25386117,25386196 -6 + chr12 25423600 25423718 chr12,25423569,25423718,-,MIRc,SINE,MIR,-107,161,5,25423462,25423722 -1 - chr12 25424525 25424629 chr12,25424525,25424629,-,MIR,SINE,MIR,-26,236,121,25424499,25424749 -6 - chr12 25424632 25424942 chr12,25424632,25424942,+,AluSx,SINE,Alu,1,304,-8,25424632,25424950 +5 + chr12 25585994 25586017 chr12,25585850,25586017,-,MIR3,SINE,MIR,-8,200,31,25585842,25586047 +5 - chr12 25592495 25592928 chr12,25592194,25596534,+,L1PBa1,LINE,L1,251,4664,-2198,25591944,25598732 -1 + chr12 25782706 25782913 chr12,25782644,25782913,+,AluSz,SINE,Alu,3,271,-41,25782642,25782954 -5 + chr12 25782938 25783100 chr12,25782938,25783100,+,MER3,DNA,hAT-Charlie,1,172,-37,25782938,25783137 -6 + chr12 25814081 25814171 chr12,25814045,25814233,-,L2c,LINE,L2,-50,3337,3128,25813995,25817360 +1 - chr12 25831416 25831483 chr12,25831185,25831483,-,AluJo,SINE,Alu,-15,297,1,25831170,25831483 +5 - chr12 25831486 25831502 chr12,25831486,25831502,+,(AT)n,Simple_repeat,Simple_repeat,1,35,-83,25831486,25831585 -6 + chr12 25831502 25831554 chr12,25831502,25831563,+,A-rich,Low_complexity,Low_complexity,1,64,0,25831502,25831563 -2 + chr12 25885725 25885855 chr12,25884057,25885899,+,MER52D,LTR,ERV1,7,2123,0,25884051,25885899 -1 + chr12 25939329 25939356 chr12,25939259,25939356,-,7SK,RNA,RNA,-172,159,59,25939087,25939414 +5 - chr12 25945005 25945043 chr12,25945005,25945043,+,AluYk11,SINE,Alu,1,38,-273,25945005,25945316 -6 + chr12 25945043 25945140 chr12,25945043,25945140,-,MER57A-int,LTR,ERV1,-913,5274,5184,25944130,25950323 +6 - chr12 25945140 25945446 chr12,25945140,25945446,-,AluSx,SINE,Alu,-5,307,1,25945135,25945446 +6 - chr12 25945446 25946135 chr12,25945446,25947296,-,MER57A-int,LTR,ERV1,-1004,5183,3302,25944442,25950597 +2 - chr12 25947519 25947619 chr12,25947296,25947619,-,AluJr,SINE,Alu,0,312,1,25947296,25947619 +4 - chr12 25952758 25953032 chr12,25952758,25953032,-,AluJr4,SINE,Alu,-14,298,9,25952744,25953040 +5 - chr12 25953032 25953076 chr12,25953032,25953447,-,MER57A-int,LTR,ERV1,-5287,900,511,25947745,25953957 +2 - chr12 25954655 25954669 chr12,25954281,25954669,-,MER57B2,LTR,ERV1,0,403,8,25954281,25954676 +5 - chr12 25955075 25955241 chr12,25955075,25955449,-,MSTB,LTR,ERVL-MaLR,0,426,1,25955075,25955449 +2 - chr12 25958028 25958041 chr12,25958028,25958041,+,(TTCT)n,Simple_repeat,Simple_repeat,1,40,0,25958028,25958041 -6 + chr12 25958041 25958067 chr12,25958041,25958067,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,25958041,25958067 -1 + chr12 25958491 25958540 chr12,25958491,25958540,+,(GGCGCG)n,Simple_repeat,Simple_repeat,1,49,0,25958491,25958540 -6 + chr12 26271696 26271733 chr12,26271696,26271733,+,L2c,LINE,L2,3281,3321,-66,26268416,26271799 -6 + chr12 26273329 26273697 chr12,26273279,26273697,-,MLT1B,LTR,ERVL-MaLR,-3,387,4,26273276,26273700 +5 - chr12 26315715 26315736 chr12,26310352,26316762,-,L1PA8,LINE,L1,-3,6484,8,26310349,26316769 -1 - chr12 26326384 26326476 chr12,26326309,26326664,-,MLT1A,LTR,ERVL-MaLR,-1,373,2,26326308,26326665 +3 - chr12 26400765 26400851 chr12,26400765,26400938,+,MIR3,SINE,MIR,2,196,-72,26400764,26401010 +4 + chr12 26623369 26623402 chr12,26623254,26623650,+,MER44B,DNA,TcMar-Tigger,144,550,0,26623111,26623650 +1 + chr12 26627326 26627409 chr12,26627326,26627521,+,MIRb,SINE,MIR,9,220,-48,26627318,26627569 +4 + chr12 26649070 26649192 chr12,26649070,26649192,-,L1MC4,LINE,L1,0,8042,7901,26649070,26657092 -6 - chr12 26649192 26649238 chr12,26649192,26649238,+,(CA)n,Simple_repeat,Simple_repeat,1,46,0,26649192,26649238 +6 + chr12 26649238 26649479 chr12,26649238,26649567,-,L1MC4,LINE,L1,-142,7900,7590,26649096,26657156 -5 - chr12 26972420 26972545 chr12,26972420,26972749,-,AluSx1,SINE,Alu,-17,295,1,26972403,26972749 -4 - chr12 26977994 26978108 chr12,26977820,26978108,+,AluJo,SINE,Alu,1,295,-17,26977820,26978125 +2 + chr12 26978169 26978259 chr12,26978169,26978259,+,Charlie7,DNA,hAT-Charlie,2520,2612,0,26975650,26978259 +6 + chr12 26978297 26978470 chr12,26978297,26978470,-,MIRb,SINE,MIR,-57,211,20,26978240,26978489 -6 - chr12 26978578 26978880 chr12,26978578,26978880,-,AluJo,SINE,Alu,-14,298,1,26978564,26978880 -6 - chr12 26978909 26978957 chr12,26978909,26978957,+,MER5A,DNA,hAT-Charlie,114,162,-27,26978796,26978984 +6 + chr12 27037100 27037559 chr12,27035439,27037559,-,L1PA3,LINE,L1,0,6155,4034,27035439,27041592 -1 - chr12 27037739 27037826 chr12,27037739,27037826,+,Kanga1c,DNA,TcMar-Tc2,647,729,0,27037093,27037826 +6 + chr12 27037827 27038213 chr12,27037827,27038213,+,L1MDa,LINE,L1,4241,4649,-1888,27033587,27040101 +6 + chr12 27038405 27038515 chr12,27038405,27038515,+,L1MC,LINE,L1,4493,4608,-1538,27033913,27040053 +6 + chr12 27038608 27038763 chr12,27038608,27038763,+,L1MDa,LINE,L1,5166,5331,-1206,27033443,27039969 +6 + chr12 27038819 27038943 chr12,27038819,27038943,+,L1MB7,LINE,L1,6040,6176,-8,27032780,27038951 +6 + chr12 27148283 27148339 chr12,27148270,27148339,-,OldhAT1,DNA,hAT-Ac,-413,2435,2370,27147857,27150708 +5 - chr12 27148393 27148546 chr12,27148393,27148649,+,L3,LINE,CR1,2321,2564,-1535,27146073,27150184 -2 + chr12 27389797 27389845 chr12,27389797,27389845,+,(TTTAA)n,Simple_repeat,Simple_repeat,1,49,0,27389797,27389845 -6 + chr12 27394424 27394510 chr12,27394268,27394510,+,L2a,LINE,L2,3123,3426,0,27391146,27394510 -4 + chr12 27446578 27446625 chr12,27446578,27446627,+,MER110,LTR,ERV1,354,403,-88,27446225,27446715 -1 + chr12 27547517 27547921 chr12,27547517,27547921,-,LTR16A1,LTR,ERVL,-1,455,1,27547516,27547921 +6 - chr12 27552655 27552684 chr12,27552655,27552684,+,(CATAACT)n,Simple_repeat,Simple_repeat,1,32,0,27552655,27552684 -6 + chr12 27552684 27552773 chr12,27552684,27553110,-,MER31A,LTR,ERV1,-1,484,4,27552683,27553113 +1 - chr12 27700066 27700079 chr12,27699777,27700079,+,AluSg,SINE,Alu,2,310,0,27699776,27700079 +1 + chr12 27700079 27700098 chr12,27700079,27700098,+,MIRb,SINE,MIR,200,221,-47,27699880,27700145 +6 + chr12 27704568 27704605 chr12,27704019,27704605,-,Tigger3c,DNA,TcMar-Tigger,0,602,1,27704019,27704605 -1 - chr12 27704323 27704411 chr12,27704019,27704605,-,Tigger3c,DNA,TcMar-Tigger,0,602,1,27704019,27704605 +1 - chr12 27708060 27708365 chr12,27707737,27708472,+,MER50,LTR,ERV1,1,711,-23,27707737,27708495 +5 + chr12 27800681 27800708 chr12,27800635,27800733,+,AluSz6,SINE,Alu,211,308,-4,27800425,27800737 -1 + chr12 28163298 28163397 chr12,28163141,28163458,+,AluSq,SINE,Alu,1,312,-1,28163141,28163459 -5 + chr12 28164069 28164190 chr12,28163911,28164199,+,AluSz,SINE,Alu,1,288,-24,28163911,28164223 -3 + chr12 28167543 28167556 chr12,28167423,28167556,+,L1MB3,LINE,L1,4521,4648,-1492,28162903,28169048 -4 + chr12 28167557 28167639 chr12,28167557,28167652,+,AluJr,SINE,Alu,194,287,-25,28167364,28167677 -2 + chr12 28186122 28186190 chr12,28186122,28186227,+,LTR52,LTR,ERVL,12,109,-312,28186111,28186539 -1 + chr12 28188330 28188540 chr12,28188039,28188540,+,L1MB8,LINE,L1,5511,6117,-61,28182529,28188601 -5 + chr12 28188694 28188859 chr12,28188694,28188859,+,MIR,SINE,MIR,90,262,0,28188605,28188859 -6 + chr12 28189014 28189094 chr12,28189014,28189094,-,L2b,LINE,L2,-9,3366,3291,28189005,28192384 +6 - chr12 28189485 28189623 chr12,28189485,28189623,+,L2b,LINE,L2,3238,3372,-3,28186248,28189626 -6 + chr12 28190017 28190080 chr12,28190017,28190080,-,L2b,LINE,L2,-3,3423,3320,28190014,28193399 +6 - chr12 28236534 28236575 chr12,28236534,28236575,+,A-rich,Low_complexity,Low_complexity,1,43,0,28236534,28236575 +6 + chr12 28821975 28822007 chr12,28821973,28822007,+,(ATTC)n,Simple_repeat,Simple_repeat,1,34,0,28821973,28822007 -5 + chr12 28822026 28822158 chr12,28822026,28822158,+,MIR,SINE,MIR,84,228,-34,28821943,28822192 -6 + chr12 28825698 28825831 chr12,28825676,28826170,-,MLT2B3,LTR,ERVL,-54,500,2,28825622,28826171 +1 - chr12 29143196 29143648 chr12,29141277,29145140,-,LTR25-int,LTR,ERV1,-942,6246,609,29140335,29145748 +5 - chr12 29156717 29156786 chr12,29156717,29156786,+,MER5A,DNA,hAT-Charlie,61,126,-63,29156657,29156849 -6 + chr12 29277404 29277685 chr12,29277404,29277685,-,L2a,LINE,L2,-13,3413,3125,29277391,29280809 +6 - chr12 29280546 29280962 chr12,29280546,29280962,-,MLT1J1,LTR,ERVL-MaLR,0,444,3,29280546,29280964 +6 - chr12 29280976 29281542 chr12,29280976,29281580,-,MLT1J1-int,LTR,ERVL-MaLR,-12,1375,780,29280964,29282359 +2 - chr12 29293066 29293166 chr12,29292962,29293166,-,AluJb,SINE,Alu,-109,203,1,29292853,29293166 +4 - chr12 29301708 29301916 chr12,29301708,29301916,-,MIRb,SINE,MIR,-17,251,12,29301691,29301927 +6 - chr12 29301952 29302064 chr12,29301952,29302261,+,AluYm1,SINE,Alu,2,311,0,29301951,29302261 -2 + chr12 29317708 29317848 chr12,29317690,29317914,-,MIRb,SINE,MIR,-1,261,15,29317689,29317928 +1 - chr12 29332737 29332790 chr12,29332737,29332790,-,L2b,LINE,L2,-6,3369,3316,29332731,29336105 +6 - chr12 29332808 29333049 chr12,29332808,29333049,-,MIR,SINE,MIR,-6,262,24,29332802,29333072 +6 - chr12 29425925 29425972 chr12,29425818,29425972,-,L3,LINE,CR1,-296,3803,3620,29425522,29429591 -1 - chr12 30208442 30208552 chr12,30208251,30208552,-,AluY,SINE,Alu,-10,301,1,30208241,30208552 -2 - chr12 30230779 30231065 chr12,30230709,30231339,-,LTR26,LTR,ERV1,0,603,1,30230709,30231339 +5 - chr12 30232776 30232860 chr12,30232491,30233081,+,MLT1G,LTR,ERVL-MaLR,20,575,-16,30232472,30233097 -3 + chr12 30288409 30288463 chr12,30288406,30288623,+,L2c,LINE,L2,2213,2466,-953,30286194,30289576 -3 + chr12 30755074 30755260 chr12,30754999,30755260,+,L1M4b,LINE,L1,291,549,-6318,30754709,30761578 +1 + chr12 30780427 30780739 chr12,30780427,30780747,-,L1MD,LINE,L1,-3574,2572,2261,30776853,30783007 -5 - chr12 30798145 30798258 chr12,30798125,30798258,-,FLAM_A,SINE,Alu,-9,133,1,30798116,30798258 -2 - chr12 30798258 30798315 chr12,30798258,30798347,-,Charlie2b,DNA,hAT-Charlie,-872,1910,1820,30797386,30800166 -4 - chr12 30800281 30800601 chr12,30800281,30800673,+,MSTD,LTR,ERVL-MaLR,1,396,0,30800281,30800673 +4 + chr12 30801701 30801969 chr12,30801583,30801969,+,MLT1H2,LTR,ERVL-MaLR,49,538,-11,30801535,30801980 +2 + chr12 30802303 30802602 chr12,30802303,30802602,-,AluSx1,SINE,Alu,-14,298,1,30802289,30802602 -6 - chr12 30978308 30978351 chr12,30977920,30978351,+,L2c,LINE,L2,2919,3384,-3,30975002,30978354 -5 + chr12 30986734 30986839 chr12,30986631,30987099,+,L3,LINE,CR1,2749,3362,-737,30983883,30987836 -3 + chr12 30997328 30997503 chr12,30997328,30997709,-,MSTA,LTR,ERVL-MaLR,0,428,1,30997328,30997709 +2 - chr12 30998962 30999037 chr12,30998962,30999037,-,MER47A,DNA,TcMar-Tigger,0,366,302,30998962,30999338 +6 - chr12 30999037 30999304 chr12,30999037,30999343,+,AluJo,SINE,Alu,6,312,0,30999032,30999343 -2 + chr12 31020763 31021096 chr12,31020711,31021096,-,MLT1J1,LTR,ERVL-MaLR,0,444,1,31020711,31021096 +5 - chr12 31021501 31021743 chr12,31021501,31021743,-,L3,LINE,CR1,-21,4078,3777,31021480,31025519 +6 - chr12 31021931 31022029 chr12,31021931,31022440,-,LTR40a,LTR,ERVL,0,519,4,31021931,31022443 +2 - chr12 31060590 31060729 chr12,31060429,31060729,+,PABL_B-int,LTR,ERV1,460,767,-6355,31059970,31067084 -5 + chr12 31073261 31073384 chr12,31073261,31073384,-,MIR3,SINE,MIR,-30,178,58,31073231,31073441 +6 - chr12 31280779 31280803 chr12,31280779,31280803,+,(AATA)n,Simple_repeat,Simple_repeat,1,24,0,31280779,31280803 -6 + chr12 31324751 31324796 chr12,31324751,31324796,+,(CCGGACC)n,Simple_repeat,Simple_repeat,1,45,0,31324751,31324796 +6 + chr12 31363481 31363795 chr12,31363432,31363965,-,MLT1F2,LTR,ERVL-MaLR,-1,559,1,31363431,31363965 +5 - chr12 31601680 31601795 chr12,31601669,31601795,-,AluY,SINE,Alu,-185,126,1,31601484,31601795 -2 - chr12 31601795 31601827 chr12,31601795,31601827,-,LTR90B,LTR,LTR,-149,647,616,31601646,31602442 -6 - chr12 31729529 31729661 chr12,31729529,31729661,-,MIRb,SINE,MIR,-16,252,128,31729513,31729788 -6 - chr12 31729923 31730002 chr12,31729923,31730002,-,L2b,LINE,L2,-3,3372,3294,31729920,31733295 -6 - chr12 31730202 31730317 chr12,31730202,31730317,+,MER65D,LTR,ERV1,3,119,-354,31730200,31730671 +6 + chr12 31730317 31730625 chr12,31730317,31730625,+,AluSx3,SINE,Alu,1,303,-8,31730317,31730633 +6 + chr12 31730763 31731056 chr12,31730763,31731056,+,MER65D,LTR,ERV1,157,459,-14,31730607,31731070 +6 + chr12 31731064 31731204 chr12,31731064,31731344,-,MER58B,DNA,hAT-Charlie,-26,315,17,31731038,31731360 -5 - chr12 31877079 31877501 chr12,31876902,31877501,-,PABL_B,LTR,ERV1,0,667,82,31876902,31877582 +5 - chr12 31877762 31877893 chr12,31877762,31877918,+,MLT1H,LTR,ERVL-MaLR,1,171,-378,31877762,31878296 -2 + chr12 32000375 32000427 chr12,32000132,32000427,+,AluY,SINE,Alu,1,294,-17,32000132,32000444 +1 + chr12 32000704 32001000 chr12,32000704,32001000,-,AluJo,SINE,Alu,-3,309,2,32000701,32001001 -6 - chr12 32001004 32001222 chr12,32001004,32001373,+,ERVL-E-int,LTR,ERVL,2582,2984,-2683,31998423,32004056 +5 + chr12 32104117 32104290 chr12,32104019,32104325,+,AluJo,SINE,Alu,1,310,-2,32104019,32104327 -5 + chr12 32339576 32339613 chr12,32339576,32339613,+,(TTTC)n,Simple_repeat,Simple_repeat,1,38,0,32339576,32339613 +6 + chr12 32339810 32340079 chr12,32339810,32340079,+,MER102c,DNA,hAT-Charlie,73,327,-4,32339738,32340083 +6 + chr12 32352349 32352499 chr12,32352250,32352499,+,AluSc,SINE,Alu,1,294,-15,32352250,32352514 +1 + chr12 32352727 32352902 chr12,32352727,32352902,+,AluJb,SINE,Alu,136,311,-1,32352592,32352903 +6 + chr12 32725277 32725302 chr12,32725277,32725302,+,(AAAC)n,Simple_repeat,Simple_repeat,1,26,0,32725277,32725302 -6 + chr12 32725611 32725660 chr12,32725611,32725903,-,AluSx1,SINE,Alu,-17,295,2,32725594,32725904 +1 - chr12 32728169 32728254 chr12,32728021,32728254,-,L1MD2,LINE,L1,-15,6344,6118,32728006,32734371 +5 - chr12 32728809 32729024 chr12,32728809,32729090,-,AluSc8,SINE,Alu,-38,273,1,32728771,32729090 +1 - chr12 33405141 33405206 chr12,33405141,33405206,+,L2a,LINE,L2,3352,3425,-1,33401790,33405207 -6 + chr12 33405818 33405896 chr12,33405818,33405962,+,L1ME4a,LINE,L1,5630,5783,-341,33400189,33406303 -1 + chr12 33432458 33432524 chr12,33432458,33432524,+,L2a,LINE,L2,3356,3421,-5,33429103,33432529 -6 + chr12 34023360 34023569 chr12,34023360,34023569,+,MIR,SINE,MIR,1,230,-32,34023360,34023601 -6 + chr12 34056561 34056727 chr12,34056474,34056727,-,MIRc,SINE,MIR,0,268,20,34056474,34056746 -2 - chr12 34156181 34156320 chr12,34156110,34156484,+,Charlie3,DNA,hAT-Charlie,2333,2706,0,34153778,34156484 +3 + chr12 34191108 34191181 chr12,34191108,34191181,-,L2a,LINE,L2,-5,3421,3294,34191103,34194474 +6 - chr12 34191406 34191432 chr12,34191406,34191919,+,L1PB4,LINE,L1,5620,6144,-12,34185787,34191931 -2 + chr12 34202457 34202582 chr12,34202325,34203868,+,L1M1,LINE,L1,19,1603,-5962,34202307,34209830 -3 + chr12 34211874 34211962 chr12,34211153,34211962,-,GSATX,Satellite,centr,-88,846,1,34211065,34211962 +4 - chr12 34211977 34212021 chr12,34211977,34212058,+,AluYa8,SINE,Alu,228,310,0,34211750,34212058 -2 + chr12 38589342 38589430 chr12,38589342,38589488,+,MIRc,SINE,MIR,107,251,-17,38589236,38589505 -2 + chr12 38589728 38589812 chr12,38589728,38590032,-,AluSx3,SINE,Alu,0,311,1,38589728,38590032 +1 - chr12 38909310 38909333 chr12,38908282,38909333,-,L1ME1,LINE,L1,-593,5586,4471,38907689,38913803 -2 - chr12 38909335 38909592 chr12,38909335,38909639,+,MLT1C,LTR,ERVL-MaLR,156,467,0,38909180,38909639 +5 + chr12 39092466 39092546 chr12,39092353,39092546,+,L2c,LINE,L2,2290,2488,-931,39090064,39093477 -4 + chr12 39092557 39092682 chr12,39092557,39092910,-,MLT1A,LTR,ERVL-MaLR,0,374,6,39092557,39092915 +1 - chr12 39092826 39092874 chr12,39092557,39092910,-,MLT1A,LTR,ERVL-MaLR,0,374,6,39092557,39092915 +1 - chr12 40140926 40141167 chr12,40140323,40141167,+,Charlie1a,DNA,hAT-Charlie,258,1133,-322,40140066,40141489 -5 + chr12 40141165 40141249 chr12,40141165,40141249,+,Charlie1b,DNA,hAT-Charlie,299,382,-141,40140867,40141390 -6 + chr12 40141250 40141424 chr12,40141250,40141424,+,MIRb,SINE,MIR,27,221,-47,40141224,40141471 -6 + chr12 40141772 40142256 chr12,40141772,40142256,-,L2c,LINE,L2,0,3387,2910,40141772,40145165 +6 - chr12 40166252 40166350 chr12,40166243,40166370,-,FLAM_C,SINE,Alu,-14,129,1,40166229,40166370 -1 - chr12 40189083 40189205 chr12,40188655,40190883,-,MER4-int,LTR,ERV1,-711,5887,2149,40187944,40193031 +3 - chr12 40190253 40190394 chr12,40188655,40190883,-,MER4-int,LTR,ERV1,-711,5887,2149,40187944,40193031 +3 - chr12 40223313 40223563 chr12,40223313,40223563,-,L1MC5,LINE,L1,0,9304,9042,40223313,40232604 +6 - chr12 40223632 40223865 chr12,40223632,40223865,+,MIRc,SINE,MIR,10,242,-26,40223623,40223891 -1 + chr12 40224003 40224047 chr12,40224003,40224047,+,(AACA)n,Simple_repeat,Simple_repeat,1,45,0,40224003,40224047 -6 + chr12 40395853 40395986 chr12,40393704,40396049,-,Tigger1,DNA,TcMar-Tigger,0,2418,2,40393704,40396050 +5 - chr12 40398560 40398664 chr12,40398310,40398733,-,Tigger15a,DNA,TcMar-Tigger,-177,538,90,40398133,40398822 +3 - chr12 40447328 40447356 chr12,40447328,40447356,+,(TGCAG)n,Simple_repeat,Simple_repeat,1,28,0,40447328,40447356 +4 + chr12 40516614 40516645 chr12,40516579,40516645,-,X9_LINE,LINE,L1,-43,893,822,40516536,40517466 -2 - chr12 40524629 40524698 chr12,40524629,40524698,-,L1MD3,LINE,L1,-1,7994,7925,40524628,40532622 -6 - chr12 40534785 40534803 chr12,40534785,40534806,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,40534785,40534806 +5 + chr12 40547477 40547576 chr12,40547307,40547576,+,AluSx,SINE,Alu,1,275,-37,40547307,40547613 +2 + chr12 40567764 40567833 chr12,40567764,40568077,+,AluSq2,SINE,Alu,1,313,0,40567764,40568077 +4 + chr12 40979230 40979244 chr12,40979230,40979364,-,MamSINE1,SINE,tRNA-RTE,-35,255,100,40979195,40979463 -5 - chr12 41409689 41409962 chr12,41409689,41410104,-,MLT1C,LTR,ERVL-MaLR,0,467,1,41409689,41410104 +2 - chr12 41412233 41412284 chr12,41412233,41412544,-,MLT1J,LTR,ERVL-MaLR,-201,311,1,41412032,41412544 +1 - chr12 41412401 41412536 chr12,41412233,41412544,-,MLT1J,LTR,ERVL-MaLR,-201,311,1,41412032,41412544 +1 - chr12 41413013 41413086 chr12,41412807,41413105,+,AluSz,SINE,Alu,1,298,-14,41412807,41413119 -3 + chr12 41765320 41765397 chr12,41764954,41765397,-,L2,LINE,L2,-2411,1008,549,41762543,41765945 -2 - chr12 41765506 41765581 chr12,41765506,41766286,+,L2b,LINE,L2,1185,2041,-1378,41764322,41767664 +5 + chr12 41932125 41932394 chr12,41932125,41932394,-,AluJo,SINE,Alu,-43,269,1,41932082,41932394 +6 - chr12 42361267 42361384 chr12,42361034,42361384,+,MLT1A0,LTR,ERVL-MaLR,4,365,0,42361031,42361384 +1 + chr12 42361384 42361621 chr12,42361384,42361621,-,L1MC4,LINE,L1,-855,7187,6942,42360529,42368562 -6 - chr12 42361659 42361703 chr12,42361659,42361749,-,L1MB4,LINE,L1,-7,6173,6085,42361652,42367833 -5 - chr12 42465365 42465384 chr12,42465365,42465384,+,L1ME2z,LINE,L1,6070,6088,-356,42459296,42465740 +6 + chr12 42465384 42466023 chr12,42465384,42466023,+,Tigger17a,DNA,TcMar-Tigger,2,653,-1,42465383,42466024 +6 + chr12 42466023 42466117 chr12,42466023,42466117,+,L1ME2z,LINE,L1,6089,6174,-270,42459935,42466387 +6 + chr12 42615503 42615962 chr12,42614632,42618368,-,LTR49-int,LTR,ERV1,-2,6329,2696,42614630,42621063 +5 - chr12 42634281 42634293 chr12,42633884,42634293,+,MER63B,DNA,hAT-Blackjack,3,436,0,42633882,42634293 -4 + chr12 42634293 42634401 chr12,42634293,42634453,+,MLT1K,LTR,ERVL-MaLR,280,440,-155,42634014,42634608 -2 + chr12 42646623 42646654 chr12,42646623,42646898,+,L3,LINE,CR1,3767,4061,-38,42642857,42646936 +4 + chr12 42652460 42652583 chr12,42652455,42652658,+,MLT1B,LTR,ERVL-MaLR,183,390,0,42652273,42652658 +3 + chr12 42670442 42670493 chr12,42670442,42670753,+,AluSx1,SINE,Alu,1,311,-1,42670442,42670754 +4 + chr12 42681922 42682063 chr12,42681903,42682124,-,AluJb,SINE,Alu,-15,297,86,42681888,42682209 -3 - chr12 42686612 42686656 chr12,42686406,42686656,+,MLT1G-int,LTR,ERVL-MaLR,706,985,-504,42685701,42687160 +2 + chr12 42686655 42686701 chr12,42686655,42687097,+,MLT1G,LTR,ERVL-MaLR,141,591,0,42686515,42687097 +5 + chr12 42692216 42692276 chr12,42691931,42692519,+,MER51A,LTR,ERV1,2,634,0,42691930,42692519 +1 + chr12 42707778 42707898 chr12,42707502,42707898,-,L3,LINE,CR1,-48,4051,3611,42707454,42711508 -2 - chr12 42707902 42707986 chr12,42707902,42714407,+,L1PA7,LINE,L1,13,6462,-7,42707890,42714414 +4 + chr12 42966122 42966145 chr12,42965900,42966218,-,MLT1J,LTR,ERVL-MaLR,-85,427,92,42965815,42966309 -1 - chr12 42996316 42996486 chr12,42996316,42996615,-,AluSx1,SINE,Alu,-14,298,1,42996302,42996615 +1 - chr12 43155341 43155494 chr12,43155341,43155494,-,MIRc,SINE,MIR,-25,183,10,43155316,43155503 -6 - chr12 43159393 43159444 chr12,43159177,43159453,-,MER5C,DNA,hAT-Charlie,-17,296,1,43159160,43159453 -3 - chr12 43160879 43160968 chr12,43160665,43161050,+,MSTA,LTR,ERVL-MaLR,1,428,0,43160665,43161050 +3 + chr12 43719104 43719203 chr12,43719104,43719203,+,L1M5,LINE,L1,3660,3756,-2390,43715445,43721593 -6 + chr12 43719208 43719463 chr12,43719208,43719463,+,L1ME3B,LINE,L1,5850,6125,-117,43713359,43719580 -6 + chr12 43719468 43720223 chr12,43719468,43720223,-,L1MEd,LINE,L1,-2500,3646,2870,43716968,43723092 +6 - chr12 43720223 43720492 chr12,43720223,43720492,+,AluSz,SINE,Alu,23,299,-13,43720201,43720505 -6 + chr12 43720492 43720714 chr12,43720492,43720714,-,L1MEd,LINE,L1,-3277,2869,2654,43717215,43723367 +6 - chr12 43720732 43720880 chr12,43720732,43720880,-,L1MEd,LINE,L1,-5726,1377,1226,43715006,43722105 +6 - chr12 43720898 43721033 chr12,43720898,43721033,+,MIR,SINE,MIR,98,261,-1,43720801,43721034 -6 + chr12 43721178 43721362 chr12,43721178,43721362,+,MIRb,SINE,MIR,2,209,-59,43721177,43721421 -6 + chr12 43721522 43721699 chr12,43721522,43721699,-,L2c,LINE,L2,-8,3379,3188,43721514,43724886 +6 - chr12 43721789 43722134 chr12,43721789,43722134,+,Tigger4b,DNA,TcMar-Tigger,2,361,0,43721788,43722134 -6 + chr12 43789005 43789115 chr12,43788813,43789115,+,MSTB-int,LTR,ERVL-MaLR,1331,1650,-1,43787483,43789116 +1 + chr12 43789115 43789482 chr12,43789115,43789482,+,MSTB,LTR,ERVL-MaLR,1,423,-3,43789115,43789485 +6 + chr12 44244394 44244424 chr12,44243495,44244424,-,L1MA7,LINE,L1,-7,6284,5353,44243488,44249776 +5 - chr12 44263473 44263616 chr12,44263225,44263616,+,L1P3,LINE,L1,5366,5766,-388,44257860,44264004 -4 + chr12 44498616 44498662 chr12,44498472,44498662,+,L3,LINE,CR1,3800,3985,-114,44494673,44498776 -5 + chr12 44498855 44499113 chr12,44498855,44499113,+,L1ME4c,LINE,L1,50,325,-505,44498806,44499618 -6 + chr12 45051243 45051268 chr12,45051243,45051268,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,45051243,45051268 +6 + chr12 45481871 45482071 chr12,45481207,45482111,-,Tigger5,DNA,TcMar-Tigger,-179,2227,1318,45481028,45483428 +5 - chr12 45519054 45519153 chr12,45518981,45519489,+,L2a,LINE,L2,2917,3426,0,45516065,45519489 -3 + chr12 45610596 45610620 chr12,45610596,45610900,+,AluSx,SINE,Alu,1,305,-7,45610596,45610907 -1 + chr12 45719075 45719375 chr12,45719075,45719375,-,MLT1A0,LTR,ERVL-MaLR,-11,354,39,45719064,45719413 +6 - chr12 45719895 45720204 chr12,45719895,45720204,+,AluJo,SINE,Alu,1,301,-11,45719895,45720215 -6 + chr12 45720568 45720591 chr12,45720568,45720591,+,(T)n,Simple_repeat,Simple_repeat,1,23,0,45720568,45720591 -6 + chr12 45720852 45720970 chr12,45720852,45720970,-,AluJr,SINE,Alu,-194,118,1,45720658,45720970 +6 - chr12 45722024 45722343 chr12,45722024,45722343,+,AluSz6,SINE,Alu,1,299,-13,45722024,45722356 -6 + chr12 45722631 45722764 chr12,45722631,45722764,-,Charlie4z,DNA,hAT-Charlie,-9,158,13,45722622,45722776 +6 - chr12 45724194 45724280 chr12,45724194,45724280,-,AluJo,SINE,Alu,-91,221,136,45724103,45724415 +6 - chr12 45727546 45727566 chr12,45727546,45727566,+,(GGC)n,Simple_repeat,Simple_repeat,1,21,0,45727546,45727566 -6 + chr12 45789362 45789657 chr12,45789362,45789834,-,L1M5,LINE,L1,-3302,2844,2357,45786060,45792190 -5 - chr12 46239310 46239473 chr12,46239310,46239631,-,AluSz,SINE,Alu,0,312,12,46239310,46239642 +1 - chr12 46383679 46383704 chr12,46383574,46383704,+,GA-rich,Low_complexity,Low_complexity,1,140,0,46383574,46383704 +1 + chr12 46387927 46387960 chr12,46387927,46387960,+,(ACCAA)n,Simple_repeat,Simple_repeat,1,34,0,46387927,46387960 +6 + chr12 46388856 46388971 chr12,46388801,46388971,-,MIR3,SINE,MIR,-11,197,24,46388790,46388994 -1 - chr12 46389434 46389465 chr12,46389434,46389465,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,46389434,46389465 +6 + chr12 46390144 46390240 chr12,46390144,46390240,-,Penelope1_Vert,LINE,Penelope,-756,331,245,46389388,46390484 -6 - chr12 46390443 46390647 chr12,46390443,46390647,+,MIR,SINE,MIR,1,256,-6,46390443,46390653 +6 + chr12 46391169 46391319 chr12,46391169,46391319,-,MER91A,DNA,hAT-Tip100,-43,153,1,46391126,46391319 -6 - chr12 46404644 46404941 chr12,46404608,46404941,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,46404608,46404941 +1 + chr12 46404941 46405228 chr12,46404941,46405228,-,MLT1H2,LTR,ERVL-MaLR,-214,341,40,46404727,46405267 -6 - chr12 46405299 46405381 chr12,46405299,46405381,+,MER113,DNA,hAT-Charlie,436,521,0,46404864,46405381 +6 + chr12 46405433 46405602 chr12,46405433,46405602,-,L2c,LINE,L2,-33,3354,3199,46405400,46408800 -6 - chr12 46406097 46406151 chr12,46406097,46406151,-,L2a,LINE,L2,-28,3398,3345,46406069,46409495 -6 - chr12 46455012 46455141 chr12,46454990,46455162,-,AluJr,SINE,Alu,-10,302,137,46454980,46455298 -3 - chr12 46652406 46652550 chr12,46652406,46652659,+,LTR79,LTR,ERVL,264,513,-14,46652143,46652673 +5 + chr12 46875206 46875342 chr12,46875206,46875342,-,L2b,LINE,L2,-1,3374,3220,46875205,46878561 -6 - chr12 46875364 46875537 chr12,46875364,46875537,-,L2,LINE,L2,-1865,1554,1377,46873499,46876913 -6 - chr12 46971079 46971159 chr12,46971079,46971467,+,MLT1E1,LTR,ERVL-MaLR,1,435,-219,46971079,46971686 +4 + chr12 46971997 46972064 chr12,46971467,46972064,+,MER39B,LTR,ERV1,1,653,0,46971467,46972064 +2 + chr12 46972064 46972155 chr12,46972064,46972281,+,MLT1E1,LTR,ERVL-MaLR,436,654,0,46971629,46972281 +5 + chr12 47205898 47206145 chr12,47205793,47206481,-,LTR8,LTR,ERV1,0,691,1,47205793,47206481 +5 - chr12 47206379 47206481 chr12,47205793,47206481,-,LTR8,LTR,ERV1,0,691,1,47205793,47206481 +5 - chr12 47208420 47208671 chr12,47208399,47208671,-,AluSx1,SINE,Alu,-10,302,3,47208389,47208673 +5 - chr12 47208671 47208790 chr12,47208671,47208790,-,AluJo,SINE,Alu,-179,133,16,47208492,47208805 +6 - chr12 47208830 47208957 chr12,47208830,47208957,+,AluJo,SINE,Alu,1,127,-185,47208830,47209142 -6 + chr12 47209114 47209273 chr12,47209114,47209273,+,MIRb,SINE,MIR,46,196,-72,47209069,47209345 -6 + chr12 47209273 47209494 chr12,47209273,47209494,+,AluSx,SINE,Alu,14,291,-21,47209260,47209515 -1 + chr12 47209494 47209560 chr12,47209494,47209560,+,MIRb,SINE,MIR,197,259,-9,47209298,47209569 -6 + chr12 47209808 47210107 chr12,47209808,47210107,-,L2,LINE,L2,-583,2836,2489,47209225,47212595 +6 - chr12 47210483 47210761 chr12,47210483,47210770,+,AluSx,SINE,Alu,1,288,-24,47210483,47210794 -1 + chr12 47237963 47238166 chr12,47237963,47238166,+,MamRep605,LTR?,LTR?,536,742,-107,47237428,47238273 -6 + chr12 47238269 47238290 chr12,47238269,47238370,-,MLT1D,LTR,ERVL-MaLR,0,505,402,47238269,47238771 +2 - chr12 47248124 47248203 chr12,47247902,47248203,+,AluSx4,SINE,Alu,2,302,-8,47247901,47248211 +1 + chr12 47248209 47248289 chr12,47248209,47248289,-,MIR3,SINE,MIR,-48,160,83,47248161,47248371 -6 - chr12 47249244 47249285 chr12,47249244,47251058,+,L1PB1,LINE,L1,252,2046,-4817,47248993,47255875 +5 + chr12 47249326 47249428 chr12,47249244,47251058,+,L1PB1,LINE,L1,252,2046,-4817,47248993,47255875 +5 + chr12 47265665 47265725 chr12,47265572,47265725,-,AluJb,SINE,Alu,-31,281,133,47265541,47265857 -1 - chr12 47265789 47265907 chr12,47265789,47265907,-,MIR,SINE,MIR,-107,155,37,47265682,47265943 -6 - chr12 47353754 47353770 chr12,47353465,47353770,+,AluJb,SINE,Alu,1,305,-7,47353465,47353777 +1 + chr12 47353774 47353882 chr12,47353774,47354349,-,L2,LINE,L2,-414,3005,2393,47353360,47356741 -4 - chr12 47367292 47367424 chr12,47367224,47367674,-,LTR54B,LTR,ERV1,-1,497,1,47367223,47367674 -3 - chr12 47369658 47369849 chr12,47369636,47369849,+,MLT1L,LTR,ERVL-MaLR,38,244,-366,47369599,47370215 +2 + chr12 47419922 47419974 chr12,47419846,47419974,+,L2,LINE,L2,2606,2734,-685,47417241,47420659 +2 + chr12 47699565 47699917 chr12,47699565,47699988,+,L1ME3,LINE,L1,5559,6044,-118,47694007,47700106 -1 + chr12 47719147 47719168 chr12,47719065,47719168,+,Tigger16a,DNA,TcMar-Tigger,796,898,-59,47718270,47719227 +1 + chr12 47719600 47719699 chr12,47719424,47719782,+,THE1B,LTR,ERVL-MaLR,1,364,0,47719424,47719782 +1 + chr12 47719902 47720009 chr12,47719857,47720009,-,MER91A,DNA,hAT-Tip100,-24,172,19,47719833,47720027 -2 - chr12 47728252 47728285 chr12,47728252,47728285,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,47728252,47728285 -6 + chr12 47728288 47728321 chr12,47728288,47728321,+,(AG)n,Simple_repeat,Simple_repeat,1,33,0,47728288,47728321 -6 + chr12 47728693 47728829 chr12,47728693,47728829,-,L2a,LINE,L2,-4,3422,3286,47728689,47732114 +6 - chr12 47729371 47729540 chr12,47729371,47729540,+,L2b,LINE,L2,3011,3188,-199,47726361,47729739 -6 + chr12 47729924 47730074 chr12,47729924,47730074,+,MamRep1879,DNA,hAT-Tip100?,56,215,-1,47729869,47730075 -6 + chr12 47730351 47730399 chr12,47730351,47730399,+,GA-rich,Low_complexity,Low_complexity,1,48,0,47730351,47730399 -6 + chr12 47734507 47734637 chr12,47734507,47734637,+,MIRc,SINE,MIR,69,217,-51,47734439,47734688 -6 + chr12 47740087 47740124 chr12,47740087,47740124,+,(GCCGA)n,Simple_repeat,Simple_repeat,1,37,0,47740087,47740124 +6 + chr12 47741830 47741989 chr12,47741830,47741989,+,MIRc,SINE,MIR,87,254,-8,47741744,47741997 +6 + chr12 47742033 47742072 chr12,47742033,47742072,+,L2a,LINE,L2,3355,3373,-53,47738679,47742125 +6 + chr12 47742072 47742294 chr12,47742072,47742329,+,Charlie7a,DNA,hAT-Charlie,1,272,0,47742072,47742329 +5 + chr12 47768529 47768548 chr12,47768276,47768548,-,L2b,LINE,L2,-607,2812,2520,47767669,47771067 -1 - chr12 47768931 47769251 chr12,47768931,47769251,-,MLT1J2,LTR,ERVL-MaLR,-74,374,23,47768857,47769273 -6 - chr12 47785975 47786002 chr12,47785975,47786187,-,MIRc,SINE,MIR,-1,229,2,47785974,47786188 -5 - chr12 47788724 47788937 chr12,47788724,47788937,+,MIR,SINE,MIR,6,262,0,47788719,47788937 +6 + chr12 47817597 47817733 chr12,47817597,47817733,+,MIR3,SINE,MIR,6,141,-121,47817592,47817854 -6 + chr12 47831349 47831453 chr12,47831271,47831467,+,L1M5,LINE,L1,5255,5451,-673,47826017,47832140 +1 + chr12 47834239 47834336 chr12,47834110,47834336,-,MIR,SINE,MIR,0,268,18,47834110,47834353 -2 - chr12 47834411 47834543 chr12,47834411,47834543,-,MIRb,SINE,MIR,-122,146,2,47834289,47834544 -5 - chr12 47898349 47898780 chr12,47898349,47898995,+,L1ME3D,LINE,L1,5478,6152,-90,47892872,47899085 +4 + chr12 47905859 47905970 chr12,47905859,47905970,-,L2b,LINE,L2,-34,3341,3218,47905825,47909187 -6 - chr12 47906029 47906097 chr12,47906029,47906097,-,MIRc,SINE,MIR,-97,171,104,47905932,47906200 -6 - chr12 47906103 47906207 chr12,47906103,47906207,-,MIRc,SINE,MIR,-95,135,27,47906008,47906233 -6 - chr12 47906282 47906358 chr12,47906282,47906358,+,CR1-L3A_Croc,LINE,CR1,4033,4108,-180,47902250,47906538 +6 + chr12 47906816 47906865 chr12,47906816,47907024,-,MIRc,SINE,MIR,-15,253,2,47906801,47907025 -5 - chr12 47960497 47961076 chr12,47960478,47961076,-,MER4A,LTR,ERV1,-9,655,1,47960469,47961076 +5 - chr12 47961080 47961221 chr12,47961080,47961221,-,MER4B,LTR,ERV1,-475,135,1,47960605,47961221 +6 - chr12 47961221 47961330 chr12,47961221,47961330,+,AluJb,SINE,Alu,191,299,-13,47961031,47961343 -6 + chr12 47961330 47961509 chr12,47961330,47961509,-,LTR29,LTR,ERV1,-580,207,1,47960750,47961509 +6 - chr12 47961908 47962214 chr12,47961908,47962214,+,AluSx,SINE,Alu,1,306,-6,47961908,47962220 -6 + chr12 47962511 47963230 chr12,47962511,47963230,-,LTR8,LTR,ERV1,0,691,3,47962511,47963232 +6 - chr12 48007981 48008061 chr12,48007817,48008104,+,AluSz,SINE,Alu,5,298,-14,48007813,48008118 -5 + chr12 48011192 48011227 chr12,48011092,48011260,-,L2a,LINE,L2,-22,3404,3246,48011070,48014505 +1 - chr12 48014054 48014168 chr12,48014035,48014168,-,FLAM_C,SINE,Alu,-10,133,1,48014025,48014168 -2 - chr12 48014168 48014183 chr12,48014168,48014183,+,(CTTT)n,Simple_repeat,Simple_repeat,4,19,0,48014165,48014183 +6 + chr12 48019771 48020169 chr12,48019500,48020347,-,L1ME4b,LINE,L1,-44,848,14,48019456,48020360 +5 - chr12 48022893 48022934 chr12,48022893,48022934,+,(CTCCA)n,Simple_repeat,Simple_repeat,1,41,0,48022893,48022934 +6 + chr12 48024150 48024438 chr12,48024150,48024438,-,AluSz6,SINE,Alu,-7,305,6,48024143,48024443 -6 - chr12 48025020 48025237 chr12,48025020,48025237,+,MIRb,SINE,MIR,27,258,-10,48024994,48025247 +6 + chr12 48025020 48025237 chr12,48025020,48025237,+,MIRb,SINE,MIR,27,258,-10,48024994,48025247 -6 + chr12 48040162 48040226 chr12,48040162,48040226,+,(AGACAC)n,Simple_repeat,Simple_repeat,1,62,0,48040162,48040226 -6 + chr12 48152817 48153022 chr12,48152713,48153022,+,AluJb,SINE,Alu,2,300,-12,48152712,48153034 +1 + chr12 48189349 48189475 chr12,48189344,48189475,-,LTR104_Mam,LTR,Gypsy,-1332,177,47,48188012,48189521 -1 - chr12 48190385 48190494 chr12,48190385,48190494,+,Charlie24,DNA,hAT-Charlie,2330,2441,-9,48188056,48190503 +6 + chr12 48190854 48191207 chr12,48190854,48191497,-,Kanga1a,DNA,TcMar-Tc2,-3,751,38,48190851,48191534 -5 - chr12 48199110 48199256 chr12,48199110,48199256,-,FRAM,SINE,Alu,-17,159,5,48199093,48199260 -6 - chr12 48199265 48199390 chr12,48199265,48199390,+,MIR,SINE,MIR,80,213,-49,48199186,48199439 +6 + chr12 48199407 48199543 chr12,48199407,48199543,+,L2c,LINE,L2,3190,3347,-40,48196218,48199583 +6 + chr12 48199600 48199638 chr12,48199600,48199638,+,(CTTTC)n,Simple_repeat,Simple_repeat,1,39,0,48199600,48199638 +6 + chr12 48199729 48200116 chr12,48199729,48200116,+,MER67C,LTR,ERV1,1,402,-309,48199729,48200425 +6 + chr12 48200136 48200243 chr12,48200136,48200243,+,MER67C,LTR,ERV1,363,506,-8,48199774,48200251 +6 + chr12 48200398 48200713 chr12,48200398,48200713,-,AluSz,SINE,Alu,0,312,1,48200398,48200713 -6 - chr12 48201537 48201829 chr12,48201537,48201829,-,AluJr,SINE,Alu,-2,310,1,48201535,48201829 -6 - chr12 48231098 48231186 chr12,48231043,48231211,+,FRAM,SINE,Alu,1,168,-8,48231043,48231219 -5 + chr12 48278544 48278589 chr12,48278544,48278589,-,MLT1I,LTR,ERVL-MaLR,-269,142,98,48278275,48278686 +6 - chr12 48284150 48284210 chr12,48283950,48284303,+,MLT1L,LTR,ERVL-MaLR,249,607,-3,48283702,48284306 -1 + chr12 48328309 48328397 chr12,48328309,48328397,-,MIRc,SINE,MIR,-153,115,20,48328156,48328416 +6 - chr12 48357453 48357592 chr12,48357431,48357756,-,AluJo,SINE,Alu,-12,300,2,48357419,48357757 -3 - chr12 48361011 48361377 chr12,48361011,48361426,+,MSTB,LTR,ERVL-MaLR,1,426,0,48361011,48361426 +5 + chr12 48500822 48500961 chr12,48500000,48501512,-,SVA_D,Retroposon,SVA,-277,1109,38,48499723,48501549 +1 - chr12 48736088 48736131 chr12,48735986,48736131,-,HAL1,LINE,L1,-341,2166,2035,48735645,48738165 -2 - chr12 48736131 48736172 chr12,48736131,48736438,+,AluJb,SINE,Alu,11,307,-5,48736121,48736443 +4 + chr12 48789576 48789596 chr12,48789531,48789596,+,(CCAGCCC)n,Simple_repeat,Simple_repeat,1,68,0,48789531,48789596 +1 + chr12 48790391 48790535 chr12,48790391,48790597,+,MIRc,SINE,MIR,20,242,-26,48790372,48790623 +5 + chr12 48995163 48995346 chr12,48995163,48995346,-,MIRb,SINE,MIR,-15,253,73,48995148,48995418 -6 - chr12 48996261 48996278 chr12,48996101,48996278,-,MIR3,SINE,MIR,-7,201,16,48996094,48996293 -2 - chr12 49009309 49009389 chr12,49009108,49009406,-,AluJo,SINE,Alu,0,312,6,49009108,49009411 -3 - chr12 49017403 49017510 chr12,49017194,49017510,-,AluJb,SINE,Alu,-6,306,2,49017188,49017511 -2 - chr12 49017568 49017634 chr12,49017568,49017634,+,MIRc,SINE,MIR,186,254,-14,49017383,49017648 +6 + chr12 49093057 49093201 chr12,49093057,49093259,+,MIRc,SINE,MIR,9,192,-16,49093049,49093275 +5 + chr12 49093249 49093259 chr12,49093057,49093259,+,MIRc,SINE,MIR,9,192,-16,49093049,49093275 +5 + chr12 49093273 49093312 chr12,49093273,49093405,+,AluJo,SINE,Alu,1,134,-178,49093273,49093583 +5 + chr12 49147663 49147864 chr12,49147656,49147864,+,MLT1J,LTR,ERVL-MaLR,251,458,-54,49147406,49147918 +2 + chr12 49292631 49292847 chr12,49292613,49292847,-,MIR,SINE,MIR,0,262,16,49292613,49292862 +5 - chr12 49293769 49293791 chr12,49293769,49293791,+,(CAG)n,Simple_repeat,Simple_repeat,1,22,0,49293769,49293791 -6 + chr12 49297594 49297653 chr12,49297594,49297653,+,G-rich,Low_complexity,Low_complexity,1,59,0,49297594,49297653 -6 + chr12 49303100 49303118 chr12,49302791,49303118,-,L2c,LINE,L2,-541,2878,2500,49302250,49305617 +4 - chr12 49303118 49303230 chr12,49303118,49303248,+,FLAM_A,SINE,Alu,1,132,-10,49303118,49303258 -2 + chr12 49303806 49303892 chr12,49303783,49304076,+,AluJb,SINE,Alu,1,303,-9,49303783,49304085 -3 + chr12 49324225 49324339 chr12,49324225,49324374,+,FLAM_A,SINE,Alu,1,142,0,49324225,49324374 -2 + chr12 49324492 49324576 chr12,49324374,49324597,+,L2c,LINE,L2,3133,3412,-14,49321242,49324611 -1 + chr12 49576840 49577314 chr12,49576738,49577428,-,L2,LINE,L2,-535,2884,2105,49576203,49579532 +5 - chr12 49577411 49577428 chr12,49576738,49577428,-,L2,LINE,L2,-535,2884,2105,49576203,49579532 +5 - chr12 49831959 49832225 chr12,49831936,49832225,-,AluJo,SINE,Alu,-11,301,1,49831925,49832225 -2 - chr12 49832225 49832466 chr12,49832225,49832513,-,MamRTE1,LINE,RTE-BovB,-2548,1264,919,49829677,49833431 -5 - chr12 49839698 49839984 chr12,49839698,49839984,-,AluSz,SINE,Alu,-16,296,1,49839682,49839984 -6 - chr12 49840143 49840507 chr12,49840143,49840507,+,L1ME3B,LINE,L1,5731,6114,-128,49834413,49840635 +5 + chr12 49840507 49840808 chr12,49840507,49840808,-,AluJb,SINE,Alu,-2,310,2,49840505,49840809 -6 - chr12 49840810 49841029 chr12,49840810,49841029,-,AluJb,SINE,Alu,-3,309,85,49840807,49841113 -6 - chr12 49841065 49841143 chr12,49841065,49841372,+,L1ME4b,LINE,L1,518,852,-40,49840548,49841412 +5 + chr12 49861207 49861229 chr12,49860208,49862000,+,SVA_D,Retroposon,SVA,5,1386,0,49860204,49862000 +1 + chr12 49864051 49864197 chr12,49863595,49864204,-,MLT1G-int,LTR,ERVL-MaLR,-797,612,5,49862798,49864208 -3 - chr12 49865149 49865439 chr12,49864975,49865439,+,MLT1C,LTR,ERVL-MaLR,1,465,-2,49864975,49865441 +2 + chr12 49908882 49908896 chr12,49908842,49908896,-,AluSx,SINE,Alu,-176,136,83,49908666,49908978 +5 - chr12 49909015 49909207 chr12,49909015,49909207,+,MIR,SINE,MIR,16,260,-2,49909000,49909209 -6 + chr12 49909262 49909502 chr12,49909262,49909502,-,L2,LINE,L2,-788,2631,2356,49908474,49911857 +6 - chr12 49910035 49910135 chr12,49910035,49910135,-,MIR3,SINE,MIR,-60,148,50,49909975,49910184 +6 - chr12 49911088 49911171 chr12,49911088,49911171,+,MIR3,SINE,MIR,40,123,-85,49911049,49911256 -6 + chr12 49920006 49920283 chr12,49919982,49920283,-,AluSx3,SINE,Alu,-10,301,1,49919972,49920283 -2 - chr12 49920345 49920512 chr12,49920345,49920512,+,MIRb,SINE,MIR,4,165,-103,49920342,49920615 +6 + chr12 49920501 49920518 chr12,49920501,49920742,-,MIR,SINE,MIR,0,262,28,49920501,49920769 -5 - chr12 49921926 49922023 chr12,49921815,49922023,-,MIRb,SINE,MIR,-8,260,40,49921807,49922062 -2 - chr12 49922079 49922334 chr12,49922079,49922334,-,L2c,LINE,L2,-292,3095,2828,49921787,49925161 -6 - chr12 49922952 49923057 chr12,49922952,49923057,-,MER5A,DNA,hAT-Charlie,-22,167,51,49922930,49923107 -6 - chr12 49923138 49923507 chr12,49923138,49923507,-,L2a,LINE,L2,-11,3364,2936,49923127,49926442 -6 - chr12 49924207 49924254 chr12,49924207,49924254,+,L2b,LINE,L2,3324,3372,-3,49920884,49924257 +6 + chr12 49925027 49925077 chr12,49925027,49925077,-,MIRb,SINE,MIR,-12,256,207,49925015,49925283 -6 - chr12 49925262 49925388 chr12,49925246,49925422,-,MIRb,SINE,MIR,-27,241,20,49925219,49925441 -3 - chr12 49926081 49926165 chr12,49926011,49926165,-,MIR3,SINE,MIR,-6,202,41,49926005,49926205 -2 - chr12 49926292 49926489 chr12,49926292,49926492,+,L1M5,LINE,L1,4863,5085,-1061,49921430,49927553 +5 + chr12 49926948 49926964 chr12,49926817,49926964,-,MIR,SINE,MIR,-2,260,116,49926815,49927079 -2 - chr12 49926983 49927083 chr12,49926983,49927278,+,AluSx1,SINE,Alu,2,301,-11,49926982,49927289 +4 + chr12 49930264 49930320 chr12,49930264,49930895,-,Zaphod,DNA,hAT-Tip100,-55,3976,3297,49930209,49934191 -5 - chr12 49959339 49959417 chr12,49959339,49959417,+,MIR3,SINE,MIR,43,138,-70,49959297,49959487 -6 + chr12 49962667 49962714 chr12,49962660,49962714,+,(TCTCACC)n,Simple_repeat,Simple_repeat,1,58,0,49962660,49962714 -4 + chr12 50123364 50123643 chr12,50123300,50123643,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,50123300,50123643 -2 - chr12 50123671 50123782 chr12,50123671,50123964,-,AluJr,SINE,Alu,-15,297,2,50123656,50123965 -5 - chr12 50165137 50165448 chr12,50165137,50165448,+,AluY,SINE,Alu,1,311,0,50165137,50165448 +6 + chr12 50186384 50186842 chr12,50186384,50186842,+,LTR47A2,LTR,ERVL,1,425,-7,50186384,50186849 -6 + chr12 50187846 50187880 chr12,50187846,50187880,+,(TCTCC)n,Simple_repeat,Simple_repeat,1,34,0,50187846,50187880 -6 + chr12 50188577 50188604 chr12,50188577,50188604,+,(CTA)n,Simple_repeat,Simple_repeat,1,29,0,50188577,50188604 -6 + chr12 50188611 50188657 chr12,50188611,50188657,+,(CAGAGG)n,Simple_repeat,Simple_repeat,1,47,0,50188611,50188657 -6 + chr12 50189734 50190009 chr12,50189734,50190009,-,AluSg,SINE,Alu,-35,275,1,50189699,50190009 +6 - chr12 50190011 50190261 chr12,50190011,50190312,-,AluSg,SINE,Alu,-6,304,1,50190005,50190312 +2 - chr12 50191333 50191363 chr12,50191238,50191537,+,AluJb,SINE,Alu,1,294,-18,50191238,50191555 -1 + chr12 50219692 50219733 chr12,50219692,50219984,-,AluJo,SINE,Alu,-19,293,1,50219673,50219984 -4 - chr12 50229790 50229984 chr12,50229709,50230023,+,L2a,LINE,L2,2807,3258,-168,50226903,50230191 +5 + chr12 50954144 50954223 chr12,50954144,50954223,-,Tigger15a,DNA,TcMar-Tigger,-14,701,625,50954130,50954847 +6 - chr12 50954225 50954286 chr12,50954225,50954286,+,MIR,SINE,MIR,201,261,-1,50954025,50954287 -6 + chr12 50954286 50954356 chr12,50954286,50954482,-,Tigger15a,DNA,TcMar-Tigger,-83,632,418,50954203,50954899 +1 - chr12 51201855 51202160 chr12,51201855,51202160,-,AluJb,SINE,Alu,-8,304,1,51201847,51202160 +6 - chr12 51202318 51202581 chr12,51202318,51202630,-,AluSx,SINE,Alu,-6,306,1,51202312,51202630 +1 - chr12 51421956 51422101 chr12,51421862,51422101,+,L2b,LINE,L2,3134,3387,0,51418729,51422101 -5 + chr12 51422109 51422177 chr12,51422109,51422256,+,MIRb,SINE,MIR,56,230,-38,51422054,51422294 -2 + chr12 51809797 51809831 chr12,51809797,51809831,+,(TTTATTC)n,Simple_repeat,Simple_repeat,1,37,0,51809797,51809831 -6 + chr12 51810307 51810331 chr12,51810307,51810331,+,(CTCA)n,Simple_repeat,Simple_repeat,1,24,0,51810307,51810331 -6 + chr12 51810521 51810560 chr12,51810521,51810560,+,(AT)n,Simple_repeat,Simple_repeat,1,40,0,51810521,51810560 -6 + chr12 51823503 51823529 chr12,51823268,51823529,-,L4_A_Mam,LINE,RTE-X,-142,4848,4543,51823126,51828071 -1 - chr12 51824110 51824219 chr12,51824097,51824219,-,MER91B,DNA,hAT-Tip100,-52,138,11,51824045,51824229 -2 - chr12 51824422 51824511 chr12,51824422,51824709,+,Tigger19b,DNA,TcMar-Tigger,154,417,-133,51824269,51824842 +4 + chr12 51825800 51825915 chr12,51825619,51825915,-,AluY,SINE,Alu,-15,296,1,51825604,51825915 -2 - chr12 51835316 51835331 chr12,51835119,51835331,+,L2b,LINE,L2,3064,3278,-97,51832056,51835428 +2 + chr12 51835442 51835496 chr12,51835442,51835507,-,MIR,SINE,MIR,-163,99,33,51835279,51835539 -5 - chr12 52058459 52058594 chr12,52058369,52058594,+,MIRc,SINE,MIR,2,258,-10,52058368,52058604 -5 + chr12 52084771 52084829 chr12,52084771,52085061,-,L2a,LINE,L2,-567,2852,2509,52084204,52087569 -4 - chr12 52092485 52092671 chr12,52092384,52092671,+,MER103C,DNA,hAT-Charlie,1,296,-1,52092384,52092672 -5 + chr12 52094765 52094834 chr12,52094765,52094834,-,MLT1H,LTR,ERVL-MaLR,-219,270,195,52094546,52095028 +6 - chr12 52205584 52205707 chr12,52205508,52205707,-,MIRb,SINE,MIR,0,268,42,52205508,52205748 +5 - chr12 52208271 52208381 chr12,52208271,52208381,+,L3b,LINE,CR1,4938,5034,-198,52203334,52208579 -6 + chr12 52209749 52209837 chr12,52209640,52209837,-,MIR3,SINE,MIR,-4,204,1,52209636,52209837 +5 - chr12 52210577 52210679 chr12,52210430,52210679,+,MIRb,SINE,MIR,16,268,0,52210415,52210679 -4 + chr12 52212053 52212144 chr12,52212053,52212144,+,MIRb,SINE,MIR,79,169,-99,52211975,52212243 +6 + chr12 52212599 52212653 chr12,52212575,52212653,+,L3b,LINE,CR1,4943,5011,-221,52207633,52212874 +2 + chr12 52223446 52223804 chr12,52223189,52225217,+,HAL1,LINE,L1,339,2438,-27,52222851,52225244 +5 + chr12 52245048 52245266 chr12,52245047,52245266,-,MIRb,SINE,MIR,0,268,26,52245047,52245291 +5 - chr12 52245693 52245821 chr12,52245693,52245821,-,L2a,LINE,L2,0,3426,3292,52245693,52249112 +6 - chr12 52245890 52245979 chr12,52245890,52245979,-,MIRc,SINE,MIR,-62,206,117,52245828,52246095 +6 - chr12 52246315 52246388 chr12,52246315,52246388,-,L2c,LINE,L2,-57,3330,3256,52246258,52249643 +6 - chr12 52247177 52247369 chr12,52247102,52247369,-,Arthur1C,DNA,hAT-Tip100,-18,345,35,52247084,52247403 +4 - chr12 52275062 52275077 chr12,52275062,52275206,+,MIRc,SINE,MIR,118,265,-3,52274945,52275209 -2 + chr12 52306826 52306860 chr12,52306826,52306860,+,(CTTG)n,Simple_repeat,Simple_repeat,1,35,0,52306826,52306860 -6 + chr12 52401992 52402259 chr12,52401984,52402259,+,MIR,SINE,MIR,1,262,0,52401984,52402259 +2 + chr12 52407580 52407627 chr12,52407413,52407627,-,MIR,SINE,MIR,0,262,34,52407413,52407660 -1 - chr12 52412423 52412547 chr12,52412423,52412547,-,L3,LINE,CR1,-23,4076,3948,52412400,52416494 -6 - chr12 52609851 52610047 chr12,52609705,52610047,-,MER113,DNA,hAT-Charlie,0,521,195,52609705,52610241 -1 - chr12 52610056 52610376 chr12,52610056,52610376,-,AluSx,SINE,Alu,0,312,1,52610056,52610376 -6 - chr12 52610376 52610471 chr12,52610376,52610471,-,MER113,DNA,hAT-Charlie,-327,194,92,52610049,52610562 -6 - chr12 52612760 52612829 chr12,52612760,52612884,+,MIRb,SINE,MIR,17,157,-111,52612744,52612995 +4 + chr12 52613678 52613719 chr12,52613678,52613719,+,(CGGCCT)n,Simple_repeat,Simple_repeat,1,42,0,52613678,52613719 +6 + chr12 52614794 52614911 chr12,52614794,52614911,+,MIR3,SINE,MIR,41,156,-52,52614754,52614963 +6 + chr12 53013556 53013798 chr12,53013504,53013798,+,AluSz,SINE,Alu,1,296,-16,53013504,53013814 +2 + chr12 53013880 53013921 chr12,53013880,53014127,+,AluJr,SINE,Alu,1,248,-64,53013880,53014191 +5 + chr12 53039029 53039065 chr12,53039029,53039065,+,(TTTTTTG)n,Simple_repeat,Simple_repeat,1,37,0,53039029,53039065 -6 + chr12 53043329 53043612 chr12,53043329,53043612,+,AluSx4,SINE,Alu,1,282,-28,53043329,53043640 -6 + chr12 53043613 53043886 chr12,53043613,53043886,+,AluJo,SINE,Alu,11,291,-21,53043603,53043907 -6 + chr12 53298854 53299129 chr12,53298854,53299152,+,AluSx,SINE,Alu,2,298,-14,53298853,53299166 -2 + chr12 53464760 53464852 chr12,53464680,53465035,-,LFSINE_Vert,SINE,tRNA,0,459,105,53464680,53465139 -3 - chr12 53750516 53750539 chr12,53750516,53750539,+,(GT)n,Simple_repeat,Simple_repeat,1,23,0,53750516,53750539 -6 + chr12 53750796 53750838 chr12,53750796,53750838,+,(GT)n,Simple_repeat,Simple_repeat,1,43,0,53750796,53750838 -6 + chr12 53754439 53754509 chr12,53754439,53754632,+,MIRb,SINE,MIR,24,224,-44,53754416,53754676 +4 + chr12 53761828 53761874 chr12,53761793,53761874,+,L2b,LINE,L2,3284,3374,-1,53758510,53761875 +2 + chr12 53762073 53762104 chr12,53762073,53762116,+,(TAAA)n,Simple_repeat,Simple_repeat,1,45,0,53762073,53762116 +5 + chr12 53935473 53935505 chr12,53935473,53935505,+,(CACGCA)n,Simple_repeat,Simple_repeat,1,32,0,53935473,53935505 -6 + chr12 53966276 53966328 chr12,53966205,53966328,+,(TCCCTCTC)n,Simple_repeat,Simple_repeat,1,128,0,53966205,53966328 -4 + chr12 53982935 53982984 chr12,53982935,53982984,+,(GCCTG)n,Simple_repeat,Simple_repeat,1,50,0,53982935,53982984 -6 + chr12 53994768 53994847 chr12,53994768,53994847,+,(GCGA)n,Simple_repeat,Simple_repeat,1,87,0,53994768,53994847 -6 + chr12 54017342 54017405 chr12,54017342,54017405,+,GA-rich,Low_complexity,Low_complexity,1,64,0,54017342,54017405 +6 + chr12 54082148 54082165 chr12,54082148,54082181,+,A-rich,Low_complexity,Low_complexity,1,34,0,54082148,54082181 +4 + chr12 54102244 54102374 chr12,54102244,54102374,+,L2b,LINE,L2,2458,2589,-830,54099787,54103204 +6 + chr12 54102385 54102496 chr12,54102385,54102496,-,L2a,LINE,L2,-10,3416,3250,54102375,54105745 -6 - chr12 54114728 54114830 chr12,54114721,54114830,+,MIRb,SINE,MIR,110,221,-47,54114612,54114877 -4 + chr12 54118604 54118640 chr12,54118555,54118640,+,L2a,LINE,L2,3229,3343,-83,54115327,54118723 +2 + chr12 54119173 54119642 chr12,54119173,54119642,+,L1MB7,LINE,L1,5714,6184,0,54113460,54119642 +6 + chr12 54120283 54120417 chr12,54120283,54120417,+,MIR3,SINE,MIR,2,160,-48,54120282,54120465 +6 + chr12 54120421 54120551 chr12,54120421,54120551,-,Charlie15a,DNA,hAT-Charlie,0,224,90,54120421,54120640 -6 - chr12 54120664 54120861 chr12,54120664,54120861,+,MIRb,SINE,MIR,53,268,0,54120612,54120861 +6 + chr12 54120880 54121175 chr12,54120880,54121175,-,AluSz,SINE,Alu,-18,294,1,54120862,54121175 -6 - chr12 54121239 54121643 chr12,54121239,54121643,-,MLT1J2,LTR,ERVL-MaLR,-20,428,9,54121219,54121651 -5 - chr12 54121276 54121455 chr12,54121239,54121643,-,MLT1J2,LTR,ERVL-MaLR,-20,428,9,54121219,54121651 +5 - chr12 54122030 54122224 chr12,54122030,54122224,+,MIRb,SINE,MIR,47,257,-11,54121984,54122235 +6 + chr12 54132692 54132843 chr12,54132692,54132848,-,L2a,LINE,L2,-5,3421,3254,54132687,54136101 -5 - chr12 54145277 54145329 chr12,54145277,54145329,+,Plat_L3,LINE,CR1,3512,3563,-23,54141766,54145352 -6 + chr12 54145545 54145630 chr12,54145545,54145630,-,MER121,DNA,hAT?,-183,218,134,54145362,54145763 +6 - chr12 54145646 54145691 chr12,54145646,54145691,+,G-rich,Low_complexity,Low_complexity,1,45,0,54145646,54145691 -6 + chr12 54145909 54145968 chr12,54145909,54145968,+,(TCATCT)n,Simple_repeat,Simple_repeat,1,64,0,54145909,54145968 -6 + chr12 54162548 54162693 chr12,54162548,54162693,+,L3b,LINE,CR1,4912,5065,-167,54157637,54162860 -6 + chr12 54164999 54165021 chr12,54164926,54165032,-,MIR,SINE,MIR,-41,221,97,54164885,54165128 -3 - chr12 54168333 54168491 chr12,54168333,54168491,+,MER5A1,DNA,hAT-Charlie,2,163,-3,54168332,54168494 +6 + chr12 54168564 54168595 chr12,54168564,54168659,-,L2b,LINE,L2,0,3375,3281,54168564,54171939 -5 - chr12 54276800 54276854 chr12,54276800,54276854,+,Charlie9,DNA,hAT-Charlie,2684,2746,-11,54274117,54276865 +6 + chr12 54277039 54277175 chr12,54277039,54277209,-,AluSx1,SINE,Alu,-19,293,132,54277020,54277340 -4 - chr12 54407397 54407506 chr12,54407313,54407561,-,MIRc,SINE,MIR,-2,266,14,54407311,54407574 -3 - chr12 54436832 54437104 chr12,54436632,54437146,+,MLT1F,LTR,ERVL-MaLR,1,547,-1,54436632,54437147 +5 + chr12 54466841 54466952 chr12,54466816,54466952,-,AluSz6,SINE,Alu,-11,301,164,54466805,54467115 -2 - chr12 54466958 54466985 chr12,54466958,54467301,-,L1MB2,LINE,L1,-2,6169,5822,54466956,54473122 -5 - chr12 54497323 54497436 chr12,54497306,54497436,-,AluJo,SINE,Alu,-181,131,2,54497125,54497437 -2 - chr12 54685078 54685186 chr12,54685078,54685186,-,L2a,LINE,L2,-339,3080,2982,54684739,54688167 -6 - chr12 54687080 54687434 chr12,54687045,54687462,-,MLT1J,LTR,ERVL-MaLR,-71,441,2,54686974,54687463 -5 - chr12 55014018 55014176 chr12,55012630,55014176,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,55012630,55014176 +2 + chr12 55014176 55014247 chr12,55014176,55014516,+,THE1B,LTR,ERVL-MaLR,1,364,0,55014176,55014516 +5 + chr12 55479389 55479472 chr12,55478463,55480124,-,SVA_D,Retroposon,SVA,-2,1384,1,55478461,55480124 +1 - chr12 55585415 55585434 chr12,55585340,55585434,-,MLT1O,LTR,ERVL-MaLR,-331,211,113,55585009,55585546 +4 - chr12 55639036 55639282 chr12,55639036,55639282,-,AluSq2,SINE,Alu,0,313,58,55639036,55639339 +6 - chr12 55639301 55639316 chr12,55639301,55639553,+,L1MA6,LINE,L1,5940,6190,-110,55633362,55639663 -2 + chr12 55730245 55730275 chr12,55730245,55730275,+,GA-rich,Low_complexity,Low_complexity,1,30,0,55730245,55730275 +6 + chr12 55730276 55730368 chr12,55730276,55730368,-,L2a,LINE,L2,-8,3418,3321,55730268,55733688 -6 - chr12 55730660 55730805 chr12,55730660,55730805,+,L1MC5a,LINE,L1,2339,2506,-271,55728322,55731076 +6 + chr12 55762009 55762027 chr12,55762009,55762291,+,AluSx1,SINE,Alu,5,286,-26,55762005,55762317 -2 + chr12 56029677 56029766 chr12,56029677,56029859,-,MIRb,SINE,MIR,-53,215,20,56029624,56029878 +2 - chr12 56104614 56104639 chr12,56104551,56104639,+,(CTCG)n,Simple_repeat,Simple_repeat,1,92,0,56104551,56104639 -5 + chr12 56150940 56150985 chr12,56150940,56151052,+,MIR,SINE,MIR,124,231,-31,56150817,56151083 -2 + chr12 56162383 56162420 chr12,56162383,56162420,+,A-rich,Low_complexity,Low_complexity,1,37,0,56162383,56162420 -6 + chr12 56269882 56269921 chr12,56269638,56269921,-,AluSx1,SINE,Alu,-23,289,6,56269615,56269926 +4 - chr12 56308868 56309004 chr12,56308846,56309004,+,MIR3,SINE,MIR,40,201,-7,56308807,56309011 +1 + chr12 56309124 56309174 chr12,56309124,56309268,+,AluYh3,SINE,Alu,2,140,-171,56309123,56309439 +4 + chr12 56309320 56309449 chr12,56309268,56309570,+,AluY,SINE,Alu,1,302,-9,56309268,56309579 +5 + chr12 56312407 56312499 chr12,56312222,56312520,-,AluJb,SINE,Alu,0,312,2,56312222,56312521 -3 - chr12 56412190 56413190 chr12,56412190,56413643,-,MER52A,LTR,ERV1,0,1755,4,56412190,56413646 +1 - chr12 57144620 57144763 chr12,57144461,57144763,+,L2a,LINE,L2,3106,3426,0,57141356,57144763 -5 + chr12 57144765 57144955 chr12,57144765,57144955,-,L1ME3G,LINE,L1,-504,420,220,57144261,57145174 +6 - chr12 57431142 57431185 chr12,57431142,57431185,+,(CGCACG)n,Simple_repeat,Simple_repeat,1,43,0,57431142,57431185 +6 + chr12 57431185 57431196 chr12,57431185,57431196,+,(CGCA)n,Simple_repeat,Simple_repeat,1,54,0,57431185,57431196 +6 + chr12 57433800 57433935 chr12,57433800,57434098,+,AluSg,SINE,Alu,1,298,-12,57433800,57434110 +5 + chr12 57612118 57612158 chr12,57612118,57612158,+,L3,LINE,CR1,4051,4090,-9,57608068,57612167 -5 + chr12 57612995 57613045 chr12,57612995,57613045,+,(CCCCTGG)n,Simple_repeat,Simple_repeat,1,54,0,57612995,57613045 -6 + chr12 57803987 57804415 chr12,57803987,57804530,-,L1ME1,LINE,L1,-33,6146,5582,57803954,57810111 -5 - chr12 57870329 57870381 chr12,57870329,57870535,+,MIRb,SINE,MIR,3,222,-46,57870327,57870581 -2 + chr12 57871996 57872088 chr12,57871986,57872202,+,L2,LINE,L2,2697,2914,-505,57869290,57872707 -3 + chr12 57872853 57872976 chr12,57872695,57873000,+,AluSz,SINE,Alu,1,303,-9,57872695,57873009 -3 + chr12 57886361 57886511 chr12,57885958,57886511,+,L1MC5,LINE,L1,8480,9019,-285,57877479,57886796 -5 + chr12 57894111 57894183 chr12,57894111,57894183,-,MIR3,SINE,MIR,-8,200,136,57894103,57894318 +6 - chr12 57894826 57894865 chr12,57894826,57894865,+,GA-rich,Low_complexity,Low_complexity,1,40,0,57894826,57894865 -6 + chr12 57895185 57895289 chr12,57895185,57895289,+,L2b,LINE,L2,3272,3375,0,57891914,57895289 -6 + chr12 57931528 57931737 chr12,57931474,57931762,-,MLT1K,LTR,ERVL-MaLR,-8,587,294,57931466,57932055 +5 - chr12 57935074 57935109 chr12,57934955,57935109,-,MIR3,SINE,MIR,-5,203,68,57934950,57935176 +5 - chr12 57935146 57935348 chr12,57935146,57935348,+,L4_A_Mam,LINE,RTE-X,4727,4939,-51,57930420,57935399 -6 + chr12 57935455 57935567 chr12,57935455,57935567,+,L2,LINE,L2,1838,1960,-1459,57933618,57937026 -6 + chr12 58093327 58093362 chr12,58092985,58093382,+,MER39,LTR,ERV1,307,707,0,58092679,58093382 +5 + chr12 58095676 58095792 chr12,58095676,58095792,+,MLT2D,LTR,ERVL,1,104,-310,58095676,58096102 -6 + chr12 58095792 58096082 chr12,58095792,58096082,-,AluSx,SINE,Alu,-16,296,1,58095776,58096082 +6 - chr12 58096082 58096393 chr12,58096082,58096393,+,MLT2D,LTR,ERVL,105,412,-2,58095978,58096395 -6 + chr12 58096439 58096740 chr12,58096439,58096740,+,AluY,SINE,Alu,1,301,-10,58096439,58096750 -6 + chr12 58096747 58096924 chr12,58096747,58096924,+,MIR,SINE,MIR,8,249,-13,58096740,58096937 -6 + chr12 58096912 58097005 chr12,58096912,58097005,-,MIR,SINE,MIR,-165,97,5,58096747,58097009 +6 - chr12 58097012 58097375 chr12,58097012,58097375,-,MER21C,LTR,ERVL,-5,933,592,58097007,58097966 +6 - chr12 58097375 58097745 chr12,58097375,58097745,-,MLT1A0,LTR,ERVL-MaLR,0,365,4,58097375,58097748 +6 - chr12 58097745 58098013 chr12,58097745,58098282,-,MER21C,LTR,ERVL,-347,591,1,58097398,58098282 +1 - chr12 58104035 58104160 chr12,58104035,58104160,-,FLAM_A,SINE,Alu,-16,126,1,58104019,58104160 -6 - chr12 58104986 58105057 chr12,58104986,58105057,+,MADE2,DNA,TcMar-Mariner,3,76,-4,58104984,58105061 +6 + chr12 58105091 58105807 chr12,58105091,58105807,-,L2c,LINE,L2,-9,3378,2607,58105082,58108413 -6 - chr12 58566343 58566588 chr12,58566343,58566619,+,AluSx,SINE,Alu,34,310,-2,58566310,58566621 -2 + chr12 58570702 58570777 chr12,58570416,58570777,-,MLT1M,LTR,ERVL-MaLR,-204,468,99,58570212,58570875 +4 - chr12 58571328 58571432 chr12,58571163,58571489,+,AluSx4,SINE,Alu,1,310,0,58571163,58571489 -3 + chr12 58609209 58609526 chr12,58609209,58609526,+,L2c,LINE,L2,3075,3387,0,58606135,58609526 -6 + chr12 58712184 58712225 chr12,58712180,58712225,-,MER5B,DNA,hAT-Charlie,-71,107,64,58712109,58712288 +5 - chr12 58712304 58712352 chr12,58712304,58712370,+,L2a,LINE,L2,3339,3408,-18,58708966,58712388 -2 + chr12 58756963 58757032 chr12,58756772,58757160,-,MER73,LTR,ERVL,0,644,248,58756772,58757407 +3 - chr12 58768633 58768694 chr12,58768633,58768694,-,L1PREC2,LINE,L1,-3821,2325,2265,58764812,58770958 +6 - chr12 58768695 58768732 chr12,58768695,58769529,+,L1PREC2,LINE,L1,2321,3159,-2987,58766375,58772516 -2 + chr12 58781571 58781747 chr12,58781360,58781953,-,MER70B,LTR,ERVL,0,578,1,58781360,58781953 +1 - chr12 58800372 58800460 chr12,58798090,58800707,-,L1PA8,LINE,L1,-1,6171,3544,58798089,58804250 -1 - chr12 58800583 58800707 chr12,58798090,58800707,-,L1PA8,LINE,L1,-1,6171,3544,58798089,58804250 -1 - chr12 58800713 58800830 chr12,58800713,58800830,-,MIR,SINE,MIR,-117,145,12,58800596,58800841 -6 - chr12 59402629 59402763 chr12,59402358,59402772,+,L1M4,LINE,L1,3253,3689,-2457,59399106,59405229 -3 + chr12 59411131 59411171 chr12,59411099,59411231,-,L1MC4a,LINE,L1,-1816,6066,5936,59409283,59417166 +1 - chr12 59523278 59523455 chr12,59523223,59523579,-,LTR108d_Mam,LTR,ERVL,0,544,173,59523223,59523751 +5 - chr12 60092864 60092909 chr12,60092726,60093331,-,L1M3,LINE,L1,-1316,4824,4217,60091410,60097547 -1 - chr12 60095129 60095404 chr12,60095102,60095404,-,AluSx,SINE,Alu,-7,305,3,60095095,60095406 -2 - chr12 60095440 60095478 chr12,60095440,60095478,+,(TGTG)n,Simple_repeat,Simple_repeat,1,38,0,60095440,60095478 +6 + chr12 60095478 60095503 chr12,60095478,60095503,+,(TGTGTA)n,Simple_repeat,Simple_repeat,1,67,0,60095478,60095503 +6 + chr12 62140330 62140412 chr12,62140330,62140667,+,LTR16A,LTR,ERVL,94,451,0,62140237,62140667 -2 + chr12 62482427 62482666 chr12,62482427,62482666,+,Charlie22a,DNA,hAT-Charlie,160,425,-66,62482268,62482732 -6 + chr12 62482666 62482750 chr12,62482666,62482750,-,MER33,DNA,hAT-Charlie,0,324,241,62482666,62482990 +6 - chr12 62482750 62483032 chr12,62482750,62483063,+,AluJr,SINE,Alu,2,312,0,62482749,62483063 -2 + chr12 62484915 62484932 chr12,62484915,62484935,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,62484915,62484935 -1 + chr12 62602046 62602207 chr12,62602046,62602207,+,MER53,DNA,hAT,1,193,0,62602046,62602207 -6 + chr12 62602758 62602788 chr12,62602758,62602788,+,(GGCGG)n,Simple_repeat,Simple_repeat,1,30,0,62602758,62602788 +6 + chr12 62602758 62602788 chr12,62602758,62602788,+,(GGCGG)n,Simple_repeat,Simple_repeat,1,30,0,62602758,62602788 -6 + chr12 62613605 62613812 chr12,62613517,62613812,-,AluSz,SINE,Alu,-24,288,1,62613493,62613812 -2 - chr12 62613828 62613972 chr12,62613828,62613972,-,L2c,LINE,L2,-53,3334,3188,62613775,62617159 -6 - chr12 62614324 62614459 chr12,62614324,62614459,-,FLAM_C,SINE,Alu,-8,135,1,62614316,62614459 -6 - chr12 62614692 62614932 chr12,62614692,62614932,-,MER58C,DNA,hAT-Charlie,0,215,4,62614692,62614935 -6 - chr12 62614971 62615020 chr12,62614971,62615020,+,(TC)n,Simple_repeat,Simple_repeat,1,49,0,62614971,62615020 +6 + chr12 62615231 62615671 chr12,62615231,62615671,+,MLT1G,LTR,ERVL-MaLR,1,460,-109,62615231,62615780 +6 + chr12 62615702 62616052 chr12,62615702,62616052,+,MLT1G-int,LTR,ERVL-MaLR,1132,1488,-1,62614571,62616053 +6 + chr12 62616053 62616414 chr12,62616053,62616414,+,MLT1G,LTR,ERVL-MaLR,1,379,-212,62616053,62616626 +6 + chr12 62616414 62616549 chr12,62616414,62616549,-,FLAM_C,SINE,Alu,-15,128,2,62616399,62616550 -6 - chr12 62616549 62616729 chr12,62616549,62616729,+,MLT1G,LTR,ERVL-MaLR,370,562,-7,62616180,62616736 +6 + chr12 62618691 62618900 chr12,62618691,62618900,+,MIRb,SINE,MIR,24,260,-8,62618668,62618908 +6 + chr12 62618976 62619242 chr12,62618976,62619242,+,MamRep1527,LTR,LTR,536,829,-140,62618441,62619382 +6 + chr12 62619332 62619801 chr12,62619332,62619801,+,MLT1D,LTR,ERVL-MaLR,1,466,-39,62619332,62619840 +6 + chr12 62620025 62620089 chr12,62620025,62620089,+,(TCT)n,Simple_repeat,Simple_repeat,1,66,0,62620025,62620089 +6 + chr12 62621279 62621479 chr12,62621279,62621479,+,L2b,LINE,L2,3193,3374,-1,62618087,62621480 +6 + chr12 62621718 62621798 chr12,62621718,62621798,+,MLT1H1,LTR,ERVL-MaLR,32,117,-438,62621687,62622236 +6 + chr12 62621849 62621894 chr12,62621849,62621894,+,MLT1H1,LTR,ERVL-MaLR,529,573,-6,62621321,62621900 +6 + chr12 63006469 63006541 chr12,63006398,63006678,-,MLT1O,LTR,ERVL-MaLR,-176,366,85,63006222,63006762 +1 - chr12 63152583 63152638 chr12,63152583,63152683,+,MIRc,SINE,MIR,142,237,-31,63152442,63152714 +4 + chr12 63153892 63154005 chr12,63153892,63154005,+,MIRb,SINE,MIR,68,195,-73,63153825,63154078 +6 + chr12 63360006 63360037 chr12,63360006,63360043,+,(CCTCTC)n,Simple_repeat,Simple_repeat,1,37,0,63360006,63360043 -1 + chr12 63623788 63623824 chr12,63623716,63623972,-,AluSz,SINE,Alu,-24,288,32,63623692,63624003 +5 - chr12 63795481 63795595 chr12,63795312,63795595,+,AluJb,SINE,Alu,1,300,-12,63795312,63795607 -4 + chr12 63812207 63812307 chr12,63812176,63812475,-,AluSz,SINE,Alu,-15,297,2,63812161,63812476 +3 - chr12 63816203 63816338 chr12,63816203,63816342,-,MLT1I,LTR,ERVL-MaLR,-218,193,68,63815985,63816409 +2 - chr12 63878787 63878938 chr12,63878714,63878938,+,MIRb,SINE,MIR,17,262,-6,63878698,63878944 +1 + chr12 63879007 63879033 chr12,63879007,63879310,-,AluJo,SINE,Alu,-12,300,5,63878995,63879314 -4 - chr12 63879207 63879310 chr12,63879007,63879310,-,AluJo,SINE,Alu,-12,300,5,63878995,63879314 -2 - chr12 63879380 63879420 chr12,63879380,63879420,-,MER5C1,DNA,hAT-Charlie,-2,261,222,63879378,63879641 -6 - chr12 64120434 64120464 chr12,64120294,64120464,-,L1MB1,LINE,L1,-6440,663,479,64113854,64120942 +4 - chr12 64515507 64515601 chr12,64515415,64515626,-,HAL1,LINE,L1,-604,1903,1666,64514811,64517291 +3 - chr12 64609345 64609382 chr12,64609273,64609382,+,MIRc,SINE,MIR,102,210,-58,64609172,64609440 -4 + chr12 64628498 64628541 chr12,64628498,64628796,-,AluSx,SINE,Alu,-14,298,1,64628484,64628796 -4 - chr12 64629894 64629976 chr12,64629682,64629991,+,AluSx,SINE,Alu,1,312,0,64629682,64629991 +5 + chr12 64654153 64654277 chr12,64654153,64654464,-,AluSz6,SINE,Alu,-11,301,1,64654142,64654464 +2 - chr12 64654756 64654886 chr12,64654662,64654886,+,AluSx,SINE,Alu,81,305,-7,64654582,64654893 -4 + chr12 64709458 64709684 chr12,64709225,64709684,-,MLT1F,LTR,ERVL-MaLR,-75,473,1,64709150,64709684 -1 - chr12 64710280 64710513 chr12,64710280,64710586,+,AluSg,SINE,Alu,1,306,-4,64710280,64710590 +5 + chr12 64768361 64768572 chr12,64768343,64768636,-,AluJr,SINE,Alu,-20,292,2,64768323,64768637 -3 - chr12 64883661 64883865 chr12,64883661,64883904,+,LTR88b,LTR,Gypsy?,225,478,-359,64883437,64884263 +1 + chr12 64885194 64885300 chr12,64884661,64885400,-,L1ME4b,LINE,L1,-11,881,49,64884650,64885448 -3 - chr12 64920863 64921056 chr12,64920863,64921056,-,MIR,SINE,MIR,-14,248,2,64920849,64921057 +6 - chr12 64975721 64975874 chr12,64975721,64975874,+,MIR,SINE,MIR,86,262,0,64975636,64975874 +6 + chr12 64976845 64977041 chr12,64976845,64977041,+,MLT1L,LTR,ERVL-MaLR,217,421,-189,64976629,64977230 +6 + chr12 64977148 64977235 chr12,64977148,64977235,-,MIR,SINE,MIR,-121,147,62,64977027,64977296 -6 - chr12 64977395 64977522 chr12,64977395,64977764,-,L1MA9,LINE,L1,0,6312,5883,64977395,64983646 -5 - chr12 64982408 64982497 chr12,64981600,64982497,-,L1PA6,LINE,L1,-5257,927,5,64976343,64982501 +4 - chr12 64982500 64982524 chr12,64982500,64982580,-,L1MEd,LINE,L1,-4926,2160,2080,64977574,64984659 +1 - chr12 65017528 65017607 chr12,65017528,65017716,+,MIR3,SINE,MIR,14,201,-7,65017515,65017723 +4 + chr12 65019347 65019627 chr12,65019331,65019627,-,AluSq2,SINE,Alu,-18,295,1,65019313,65019627 -2 - chr12 65019627 65019784 chr12,65019627,65019784,-,MLT1A0,LTR,ERVL-MaLR,-212,153,1,65019415,65019784 -6 - chr12 65171714 65171806 chr12,65171714,65171806,+,MIR,SINE,MIR,12,100,-162,65171703,65171968 +6 + chr12 65282034 65282054 chr12,65282034,65282332,+,AluSq2,SINE,Alu,1,298,-15,65282034,65282347 +4 + chr12 65283670 65283731 chr12,65283433,65283731,-,AluJb,SINE,Alu,-15,297,2,65283418,65283732 -2 - chr12 65284402 65284639 chr12,65284402,65284639,-,L2,LINE,L2,-815,2604,2335,65283587,65286973 -6 - chr12 65284851 65285042 chr12,65284851,65285042,+,L2,LINE,L2,2782,2992,-427,65282070,65285469 +6 + chr12 65285552 65285835 chr12,65285552,65285835,+,AluJb,SINE,Alu,1,298,-14,65285552,65285849 +6 + chr12 65285992 65286082 chr12,65285992,65286082,-,Charlie23a,DNA,hAT-Charlie,-47,292,204,65285945,65286285 -6 - chr12 65499919 65500000 chr12,65499919,65500000,+,CR1-12_AMi,LINE,CR1,443,522,-92,65499477,65500092 -6 + chr12 65523534 65523766 chr12,65523534,65523778,+,MamRTE1,LINE,RTE-BovB,2438,2712,-1100,65521097,65524878 -2 + chr12 65538684 65538761 chr12,65538638,65538802,-,L2b,LINE,L2,0,3387,3243,65538638,65542044 +1 - chr12 65557269 65557311 chr12,65557269,65557890,+,MER41B,LTR,ERV1,1,634,0,65557269,65557890 -1 + chr12 65558134 65558356 chr12,65558055,65558356,-,HAL1,LINE,L1,-1948,559,249,65556107,65558604 +5 - chr12 65558439 65558575 chr12,65558439,65558575,+,MLT1N2,LTR,ERVL-MaLR,67,212,-350,65558373,65558925 -6 + chr12 65558631 65558814 chr12,65558631,65558818,+,MLT1N2,LTR,ERVL-MaLR,356,545,-17,65558276,65558835 -1 + chr12 65559591 65559729 chr12,65559278,65559911,+,MLT1N2-int,LTR,ERVL-MaLR,492,1191,-196,65558787,65560107 +1 + chr12 65560592 65560628 chr12,65560592,65560628,+,A-rich,Low_complexity,Low_complexity,1,36,0,65560592,65560628 +6 + chr12 65587343 65587397 chr12,65587177,65587397,-,L2b,LINE,L2,-111,3276,3038,65587066,65590434 +4 - chr12 65602914 65602981 chr12,65602914,65603138,+,L2a,LINE,L2,3146,3414,-12,65599769,65603150 +4 + chr12 65608520 65608722 chr12,65608520,65608722,+,MER103C,DNA,hAT-Charlie,27,240,-57,65608494,65608779 -6 + chr12 65608924 65609221 chr12,65608924,65609221,-,AluSc8,SINE,Alu,-15,296,1,65608909,65609221 +6 - chr12 65613179 65613277 chr12,65613103,65614071,+,L1MC2,LINE,L1,5382,6335,-9,65607722,65614080 -1 + chr12 65626612 65626685 chr12,65626483,65627004,-,Arthur1B,DNA,hAT-Tip100,-643,582,35,65625840,65627038 +3 - chr12 65642149 65642372 chr12,65642149,65642448,-,MLT1J,LTR,ERVL-MaLR,-211,301,2,65641938,65642449 +1 - chr12 65647539 65647663 chr12,65647539,65647663,+,MamGypLTR1a,LTR,Gypsy,377,522,-262,65647163,65647925 +6 + chr12 65851340 65851532 chr12,65851231,65851532,+,AluSq2,SINE,Alu,1,300,-13,65851231,65851545 -5 + chr12 65851537 65851652 chr12,65851537,65851682,+,AluSg7,SINE,Alu,129,302,-7,65851409,65851689 -2 + chr12 65856133 65856228 chr12,65856133,65856228,-,Tigger19b,DNA,TcMar-Tigger,-160,390,304,65855973,65856531 +6 - chr12 65856325 65856484 chr12,65856325,65856484,-,MIR3,SINE,MIR,-40,168,2,65856285,65856485 +6 - chr12 65856563 65857023 chr12,65856563,65857023,-,MLT1C,LTR,ERVL-MaLR,0,467,1,65856563,65857023 +6 - chr12 65858006 65858289 chr12,65858006,65858289,+,Eulor5A,DNA?,DNA?,9,303,-13,65857998,65858302 -6 + chr12 65858335 65858357 chr12,65858335,65858357,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,65858335,65858357 -6 + chr12 65859217 65859293 chr12,65859217,65859293,+,MER94,DNA,hAT-Blackjack,58,134,0,65859160,65859293 -6 + chr12 65859563 65859718 chr12,65859563,65859718,+,L2c,LINE,L2,3057,3202,-185,65856507,65859903 -6 + chr12 65859718 65859801 chr12,65859718,65859801,-,MER47A,DNA,TcMar-Tigger,0,366,291,65859718,65860091 +6 - chr12 65859801 65860088 chr12,65859801,65860117,+,AluJb,SINE,Alu,1,308,-4,65859801,65860121 -2 + chr12 66134052 66134449 chr12,66133960,66135094,+,SVA_F,Retroposon,SVA,57,862,-520,66133904,66135614 +5 + chr12 66252309 66252355 chr12,66252124,66252355,-,MIRb,SINE,MIR,-41,227,8,66252083,66252362 +4 - chr12 66257259 66257434 chr12,66256832,66257540,-,ERVL-E-int,LTR,ERVL,-508,5159,4449,66256324,66261988 +1 - chr12 67037385 67037446 chr12,67037364,67037446,-,Tigger14a,DNA,TcMar-Tigger,-140,184,96,67037224,67037541 +4 - chr12 67065018 67065110 chr12,67064751,67065110,-,L1PA3,LINE,L1,0,6155,5797,67064751,67070906 +5 - chr12 67065161 67065278 chr12,67065161,67065336,+,AluJb,SINE,Alu,115,280,-32,67065047,67065368 -1 + chr12 67077626 67077694 chr12,67077608,67077694,+,MER104,DNA,TcMar-Tc2,1,87,-94,67077608,67077788 -5 + chr12 67077699 67077744 chr12,67077699,67078106,+,Kanga1a,DNA,TcMar-Tc2,308,741,-13,67077392,67078119 -2 + chr12 67086834 67086948 chr12,67086834,67087124,+,AluJr,SINE,Alu,2,293,-19,67086833,67087143 -2 + chr12 67091547 67091628 chr12,67091510,67091680,+,MIRb,SINE,MIR,19,191,-77,67091492,67091757 -3 + chr12 67441017 67441073 chr12,67441017,67441073,-,MIRc,SINE,MIR,-110,158,102,67440907,67441174 +6 - chr12 67542127 67542150 chr12,67542001,67542150,+,L2c,LINE,L2,3186,3347,-40,67538816,67542190 +2 + chr12 67542217 67542465 chr12,67542217,67542465,-,MIRb,SINE,MIR,-14,254,5,67542203,67542469 -6 - chr12 67549123 67549164 chr12,67549081,67549261,-,L1M5,LINE,L1,-996,5150,4971,67548085,67554231 -5 - chr12 67565514 67565618 chr12,67565476,67565618,-,MLT1N2,LTR,ERVL-MaLR,-315,247,104,67565161,67565721 -2 - chr12 67565795 67565829 chr12,67565795,67565829,+,(AATTT)n,Simple_repeat,Simple_repeat,1,34,0,67565795,67565829 +6 + chr12 67566004 67566059 chr12,67566004,67566059,-,L2a,LINE,L2,-4,3422,3368,67566000,67569426 -6 - chr12 67566129 67566478 chr12,67566129,67566478,+,MLT1A,LTR,ERVL-MaLR,1,370,-4,67566129,67566482 +6 + chr12 67566838 67567126 chr12,67566838,67567145,+,AluSq2,SINE,Alu,1,307,-6,67566838,67567151 +5 + chr12 67586590 67586774 chr12,67586445,67586774,+,MER46C,DNA,TcMar-Tigger,8,337,-1,67586438,67586775 -5 + chr12 67587250 67587306 chr12,67587250,67587539,-,MamGypLTR1a,LTR,Gypsy,-461,323,1,67586789,67587539 +1 - chr12 67670881 67670919 chr12,67670881,67670919,+,(TCT)n,Simple_repeat,Simple_repeat,1,38,0,67670881,67670919 -1 + chr12 67709442 67709614 chr12,67709442,67709614,-,MLT1F,LTR,ERVL-MaLR,0,569,394,67709442,67710007 +6 - chr12 67709601 67709846 chr12,67709601,67709846,-,MLT1F,LTR,ERVL-MaLR,-298,250,1,67709303,67709846 +6 - chr12 67715637 67715986 chr12,67715637,67715986,+,MLT1J,LTR,ERVL-MaLR,102,494,-18,67715536,67716004 -6 + chr12 67718353 67718541 chr12,67718353,67719796,-,LTR12C,LTR,ERV1,0,1579,3,67718353,67719798 +2 - chr12 67729396 67729475 chr12,67729316,67729555,-,MSTC,LTR,ERVL-MaLR,0,428,139,67729316,67729693 +1 - chr12 67932706 67932798 chr12,67932697,67932798,-,MIRc,SINE,MIR,-124,144,37,67932573,67932834 -2 - chr12 68013553 68013648 chr12,68013553,68013787,+,MLT2B4,LTR,ERVL,1,238,-318,68013553,68014105 +4 + chr12 68020137 68020264 chr12,68020137,68020264,+,(GTCACAT)n,Simple_repeat,Simple_repeat,1,133,0,68020137,68020264 +6 + chr12 68021306 68021327 chr12,68021306,68021533,-,MIR,SINE,MIR,0,262,23,68021306,68021555 -5 - chr12 68026651 68026708 chr12,68026368,68026822,+,MSTA,LTR,ERVL-MaLR,2,428,0,68026367,68026822 +3 + chr12 68333224 68333253 chr12,68333224,68333253,+,(TTTA)n,Simple_repeat,Simple_repeat,1,30,0,68333224,68333253 -6 + chr12 68344664 68344903 chr12,68344423,68344969,-,L2a,LINE,L2,-355,3064,2406,68344068,68347374 -1 - chr12 68349917 68349959 chr12,68349917,68349959,+,A-rich,Low_complexity,Low_complexity,1,42,0,68349917,68349959 +5 + chr12 68380435 68380731 chr12,68380394,68380937,-,MLT1H1,LTR,ERVL-MaLR,-1,554,1,68380393,68380937 +5 - chr12 68383365 68383426 chr12,68383365,68383426,+,(CA)n,Simple_repeat,Simple_repeat,1,61,0,68383365,68383426 -6 + chr12 68383501 68383605 chr12,68383501,68383704,+,MIR,SINE,MIR,31,248,-14,68383471,68383718 -1 + chr12 68403733 68403744 chr12,68403623,68403744,-,MIRb,SINE,MIR,-106,156,24,68403517,68403767 +4 - chr12 68426413 68426509 chr12,68426413,68426509,-,L2c,LINE,L2,-1,3386,3283,68426412,68429791 +6 - chr12 68427074 68427363 chr12,68427074,68427363,+,AluSx1,SINE,Alu,1,289,-23,68427074,68427386 -6 + chr12 68427461 68427526 chr12,68427461,68427526,-,L3b,LINE,CR1,-8,5224,5163,68427453,68432688 +6 - chr12 68427710 68427737 chr12,68427710,68427916,-,MIRb,SINE,MIR,-48,220,7,68427662,68427922 +1 - chr12 68432515 68432539 chr12,68432410,68432539,-,MIRb,SINE,MIR,0,268,129,68432410,68432667 +4 - chr12 68433284 68433335 chr12,68433155,68433335,-,MIRc,SINE,MIR,-18,250,46,68433137,68433380 +4 - chr12 68441888 68441987 chr12,68441333,68441987,+,L1MA5A,LINE,L1,3646,4304,-1839,68437688,68443826 -5 + chr12 68441987 68442216 chr12,68441987,68442338,-,THE1A,LTR,ERVL-MaLR,0,355,2,68441987,68442339 +1 - chr12 68674371 68674485 chr12,68674272,68674485,+,MIR,SINE,MIR,41,262,0,68674232,68674485 -5 + chr12 68674535 68674622 chr12,68674535,68674622,+,L2c,LINE,L2,3291,3381,-6,68671245,68674628 -6 + chr12 68675451 68675631 chr12,68675451,68675631,-,MamGypLTR1a,LTR,Gypsy,0,784,614,68675451,68676244 +6 - chr12 68685569 68685715 chr12,68685384,68685715,+,AluJb,SINE,Alu,2,307,-5,68685383,68685720 -5 + chr12 68687375 68687463 chr12,68687375,68687463,-,MIRc,SINE,MIR,-151,117,30,68687224,68687492 +6 - chr12 68687710 68687755 chr12,68687710,68687928,-,MIRb,SINE,MIR,-19,249,40,68687691,68687967 +1 - chr12 68828118 68828140 chr12,68827849,68828140,+,AluSz6,SINE,Alu,2,292,-20,68827848,68828160 +1 + chr12 68828371 68828403 chr12,68828371,68828603,+,AluJb,SINE,Alu,86,312,0,68828286,68828603 +5 + chr12 68828466 68828553 chr12,68828371,68828603,+,AluJb,SINE,Alu,86,312,0,68828286,68828603 +5 + chr12 68841288 68841399 chr12,68841278,68841399,-,AluJo,SINE,Alu,-194,118,2,68841084,68841400 +5 - chr12 69212123 69212262 chr12,69211864,69212262,-,MLT1L,LTR,ERVL-MaLR,-47,563,167,69211817,69212428 -1 - chr12 69213014 69213084 chr12,69212929,69213153,+,L1MC5,LINE,L1,9057,9290,-14,69203873,69213167 +3 + chr12 69222494 69222607 chr12,69222474,69222607,-,AluJr4,SINE,Alu,-178,134,2,69222296,69222608 -2 - chr12 69224113 69224242 chr12,69224113,69224298,+,MLT1L,LTR,ERVL-MaLR,391,610,0,69223723,69224298 +5 + chr12 69326574 69326981 chr12,69326125,69326981,+,L1ME1,LINE,L1,5255,6106,-73,69320871,69327054 -5 + chr12 69326981 69327274 chr12,69326981,69327274,+,AluY,SINE,Alu,1,297,-14,69326981,69327288 -6 + chr12 69327274 69327350 chr12,69327274,69327350,+,L1ME1,LINE,L1,6107,6179,0,69321168,69327350 -6 + chr12 69327344 69327861 chr12,69327344,69327861,+,L1ME3,LINE,L1,5428,5983,-179,69321917,69328040 -6 + chr12 69327862 69328013 chr12,69327862,69328013,+,AluYc,SINE,Alu,139,289,-10,69327724,69328023 -6 + chr12 69328020 69328199 chr12,69328020,69328199,+,L1ME3,LINE,L1,5981,6130,-32,69322040,69328231 -6 + chr12 69328201 69328246 chr12,69328201,69328246,+,A-rich,Low_complexity,Low_complexity,1,46,0,69328201,69328246 -6 + chr12 69328454 69328699 chr12,69328454,69328699,+,Charlie20a,DNA,hAT-Charlie,180,479,-328,69328275,69329027 -6 + chr12 69328684 69328895 chr12,69328684,69328895,+,Charlie20a,DNA,hAT-Charlie,533,757,-50,69328152,69328945 -6 + chr12 69328936 69329006 chr12,69328936,69329006,-,LTR22,LTR,ERVK,0,571,502,69328936,69329507 +6 - chr12 69329007 69329693 chr12,69329007,69329693,-,HERVK22-int,LTR,ERVK,-1956,3306,2626,69327051,69332318 +6 - chr12 69329713 69330365 chr12,69329713,69330365,-,HERVK22-int,LTR,ERVK,-2610,2652,2027,69327103,69332391 +6 - chr12 69330360 69330441 chr12,69330360,69330441,-,HERVK22-int,LTR,ERVK,-3283,3554,3474,69327077,69333914 +6 - chr12 69330496 69330592 chr12,69330496,69330592,+,Penelope1_Vert,LINE,Penelope,870,971,-116,69329627,69330708 -6 + chr12 69330826 69330984 chr12,69330826,69330984,-,HERVK22-int,LTR,ERVK,-4348,2489,2330,69326478,69333313 +6 - chr12 69331226 69331882 chr12,69331226,69331955,-,HERVK22-int,LTR,ERVK,-6078,759,37,69325148,69331991 +1 - chr12 69353494 69353608 chr12,69353494,69353787,-,AluY,SINE,Alu,-16,295,1,69353478,69353787 +2 - chr12 69353743 69353787 chr12,69353494,69353787,-,AluY,SINE,Alu,-16,295,1,69353478,69353787 +4 - chr12 69449470 69449688 chr12,69449346,69449722,+,MSTD,LTR,ERVL-MaLR,1,394,-2,69449346,69449724 +1 + chr12 69460611 69460724 chr12,69460611,69460758,-,L2,LINE,L2,-1082,2337,2187,69459529,69462944 -5 - chr12 69660071 69660233 chr12,69660071,69660233,+,MIRc,SINE,MIR,71,239,-29,69660001,69660262 -6 + chr12 69660720 69660755 chr12,69660720,69660755,+,A-rich,Low_complexity,Low_complexity,1,35,0,69660720,69660755 -6 + chr12 69713666 69713762 chr12,69713666,69713762,-,L1M5,LINE,L1,-356,5768,5666,69713310,69719427 +6 - chr12 69713793 69713847 chr12,69713793,69713847,-,Charlie24,DNA,hAT-Charlie,-16,2434,2381,69713777,69716227 +6 - chr12 69713859 69713901 chr12,69713859,69713901,+,(TGTCTT)n,Simple_repeat,Simple_repeat,1,42,0,69713859,69713901 -6 + chr12 69714315 69714501 chr12,69714315,69714501,-,L2b,LINE,L2,-1,3386,3204,69714314,69717704 +6 - chr12 69714939 69714968 chr12,69714939,69714968,+,(TTA)n,Simple_repeat,Simple_repeat,1,29,0,69714939,69714968 -6 + chr12 69715146 69715287 chr12,69715146,69715287,-,L1MA4,LINE,L1,-8,6292,6155,69715138,69721441 +6 - chr12 69722322 69722466 chr12,69722227,69722466,-,Charlie19a,DNA,hAT-Charlie,-127,259,2,69722100,69722467 +5 - chr12 69725222 69725359 chr12,69723911,69725359,-,L1M7,LINE,L1,-4521,1697,153,69719390,69725511 +4 - chr12 69730573 69730696 chr12,69730153,69730792,-,L1M7,LINE,L1,-5528,783,121,69724625,69730912 +3 - chr12 69904408 69904419 chr12,69904408,69904574,+,MIRc,SINE,MIR,2,178,-90,69904407,69904664 -2 + chr12 69946543 69946655 chr12,69946512,69946655,-,Charlie23a,DNA,hAT-Charlie,-97,242,87,69946415,69946741 +5 - chr12 69946718 69946795 chr12,69946718,69946868,-,MIR3,SINE,MIR,-48,160,3,69946670,69946870 +2 - chr12 70180338 70180538 chr12,70180098,70180628,+,MLT2B2,LTR,ERVL,1,507,-8,70180098,70180636 +1 + chr12 70201715 70202004 chr12,70201158,70202286,+,SVA_E,Retroposon,SVA,57,870,-517,70201102,70202803 +5 + chr12 70219255 70219314 chr12,70219255,70219314,+,L2b,LINE,L2,3103,3158,-217,70216153,70219531 -6 + chr12 70219324 70219597 chr12,70219324,70219754,-,MLT1C,LTR,ERVL-MaLR,-2,465,6,70219322,70219759 +2 - chr12 70468080 70468294 chr12,70467961,70468294,+,MER61A,LTR,ERV1,1,341,0,70467961,70468294 +1 + chr12 70468294 70468327 chr12,70468294,70468987,+,MER61-int,LTR,ERV1,1,707,-4510,70468294,70473497 +4 + chr12 70470213 70470308 chr12,70469353,70472019,+,MER61-int,LTR,ERV1,1655,4816,-2602,70467699,70474621 +3 + chr12 70507895 70507915 chr12,70507579,70507915,+,ERV24_Prim-int,LTR,ERV1,5269,5615,-1960,70502311,70509875 +2 + chr12 70507916 70508001 chr12,70507916,70508006,+,LTR8B,LTR,ERV1,206,296,-524,70507711,70508530 +4 + chr12 70510212 70510237 chr12,70510157,70510237,+,MIR1_Amn,SINE,MIR,92,161,-69,70510066,70510306 +2 + chr12 70510252 70510284 chr12,70510252,70510528,+,LTR48,LTR,ERV1,70,423,-364,70510183,70510892 +4 + chr12 70510408 70510528 chr12,70510252,70510528,+,LTR48,LTR,ERV1,70,423,-364,70510183,70510892 +2 + chr12 70510528 70510577 chr12,70510528,70510830,+,AluSx,SINE,Alu,3,305,-7,70510526,70510837 +4 + chr12 70511075 70511128 chr12,70510879,70511128,+,LTR48B,LTR,ERV1,333,644,0,70510547,70511128 +2 + chr12 70511128 70511222 chr12,70511128,70511222,+,MIRb,SINE,MIR,147,240,-28,70510982,70511250 +5 + chr12 70525394 70525426 chr12,70525394,70525504,+,L2c,LINE,L2,3276,3380,-7,70522119,70525511 +4 + chr12 70527675 70527749 chr12,70527428,70527956,+,LTR84b,LTR,ERVL,2,588,-173,70527427,70528129 +5 + chr12 70538271 70538455 chr12,70538271,70538455,-,MIRc,SINE,MIR,-32,236,23,70538239,70538477 -6 - chr12 70538607 70538645 chr12,70538607,70538645,-,MIRb,SINE,MIR,-205,63,26,70538402,70538670 -6 - chr12 70539131 70539277 chr12,70539131,70539277,-,MIRb,SINE,MIR,-48,220,56,70539083,70539332 -6 - chr12 70541443 70542297 chr12,70541443,70542297,-,L1MB8,LINE,L1,-1,6177,5313,70541442,70547609 -6 - chr12 70542297 70542590 chr12,70542297,70542590,+,AluSg,SINE,Alu,1,293,-17,70542297,70542607 +6 + chr12 70542590 70542605 chr12,70542590,70542605,-,L1MB8,LINE,L1,-834,5312,5312,70541756,70547916 -6 - chr12 70542605 70542914 chr12,70542605,70542914,+,AluY,SINE,Alu,1,311,0,70542605,70542914 +6 + chr12 70542914 70543040 chr12,70542914,70543281,-,L1MB8,LINE,L1,-834,5312,4981,70542080,70548261 -5 - chr12 71031693 71031706 chr12,71031693,71031858,-,MER104,DNA,TcMar-Tc2,-18,163,6,71031675,71031863 +2 - chr12 71031977 71032083 chr12,71031912,71032376,+,LTR33,LTR,ERVL,19,515,0,71031894,71032376 -1 + chr12 71047402 71047679 chr12,71046970,71047851,-,LTR28B,LTR,ERV1,0,974,29,71046970,71047879 +5 - chr12 71104350 71104526 chr12,71104208,71104769,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,71104208,71104769 +1 - chr12 71115850 71115958 chr12,71115666,71116023,+,MLT1A,LTR,ERVL-MaLR,1,363,-11,71115666,71116034 -3 + chr12 71118070 71118081 chr12,71117676,71118081,+,L1ME3,LINE,L1,5575,5996,-166,71112102,71118247 -4 + chr12 71118072 71118247 chr12,71118072,71124103,+,L1PA2,LINE,L1,125,6155,0,71117948,71124103 -1 + chr12 71709171 71709251 chr12,71709116,71709251,-,MIR,SINE,MIR,-24,238,100,71709092,71709350 +5 - chr12 71709480 71709604 chr12,71709480,71709975,+,L1M5,LINE,L1,5160,5662,-511,71704321,71710486 -2 + chr12 71710232 71710374 chr12,71710184,71710714,-,LTR78,LTR,ERV1,-648,656,119,71709536,71710832 +1 - chr12 71798244 71798380 chr12,71798096,71798380,-,AluSz,SINE,Alu,-25,287,5,71798071,71798384 +4 - chr12 71798502 71798811 chr12,71798502,71798811,+,L1ME4b,LINE,L1,6,324,-568,71798497,71799379 -6 + chr12 71798832 71799414 chr12,71798832,71799414,+,LTR67B,LTR,ERVL,49,617,-3,71798784,71799417 -6 + chr12 71799415 71799627 chr12,71799415,71799721,+,L1ME4b,LINE,L1,316,655,-237,71799100,71799958 -1 + chr12 72046149 72046505 chr12,72045744,72046984,-,L1MDa,LINE,L1,-5017,1616,88,72040727,72047071 +5 - chr12 72046885 72046980 chr12,72045744,72046984,-,L1MDa,LINE,L1,-5017,1616,88,72040727,72047071 +5 - chr12 72052608 72052721 chr12,72052608,72052917,+,AluSc8,SINE,Alu,1,309,-2,72052608,72052919 -2 + chr12 72057251 72057377 chr12,72057138,72057891,-,Tigger13a,DNA,TcMar-Tigger,-4,767,1,72057134,72057891 +1 - chr12 72253516 72253670 chr12,72253516,72253670,-,L1MC1,LINE,L1,-5,6328,6174,72253511,72259843 +6 - chr12 72253670 72253817 chr12,72253670,72253817,-,L1MD2,LINE,L1,-2130,4016,3865,72251540,72257681 +6 - chr12 72254167 72254958 chr12,72254167,72254958,+,L2a,LINE,L2,1025,1905,-1514,72253143,72256472 -6 + chr12 72254972 72255064 chr12,72254972,72255064,+,L2-3_Crp,LINE,L2,721,812,-1284,72254252,72256348 -6 + chr12 72255106 72255193 chr12,72255106,72255193,+,L2a,LINE,L2,2442,2515,-904,72252665,72256097 -6 + chr12 72255193 72255834 chr12,72255193,72255834,-,MER70B,LTR,ERVL,-1,577,2,72255192,72255835 +5 - chr12 72255834 72256638 chr12,72255834,72256638,+,L2a,LINE,L2,2516,3426,0,72253319,72256638 -6 + chr12 72257163 72257509 chr12,72257163,72257509,+,Tigger4b,DNA,TcMar-Tigger,1,351,-10,72257163,72257519 -6 + chr12 72258201 72258228 chr12,72258201,72258228,+,(AAGAA)n,Simple_repeat,Simple_repeat,1,27,0,72258201,72258228 -6 + chr12 72263395 72263430 chr12,72263395,72263430,+,(TGTTT)n,Simple_repeat,Simple_repeat,1,36,0,72263395,72263430 -6 + chr12 72263753 72263990 chr12,72263753,72263990,+,UCON22,Unknown,Unknown,101,334,0,72263653,72263990 -6 + chr12 72272275 72272337 chr12,72272275,72272337,+,(GCGAG)n,Simple_repeat,Simple_repeat,1,65,0,72272275,72272337 -6 + chr12 72274820 72274863 chr12,72274713,72274863,+,MIRb,SINE,MIR,116,262,-6,72274598,72274869 -4 + chr12 72728132 72728243 chr12,72728132,72728316,+,Tigger19a,DNA,TcMar-Tigger,1,203,-120,72728132,72728436 -2 + chr12 72728785 72728844 chr12,72728610,72728919,+,AluJr,SINE,Alu,1,308,-4,72728610,72728923 -1 + chr12 73116280 73116516 chr12,73116280,73116516,-,MIR,SINE,MIR,-15,247,6,73116265,73116521 +5 - chr12 73129017 73129069 chr12,73129017,73129069,-,L3,LINE,CR1,-2,4097,4047,73129015,73133115 +6 - chr12 73159190 73159385 chr12,73159073,73159385,-,AluY,SINE,Alu,-7,304,2,73159066,73159386 -1 - chr12 73163194 73163233 chr12,73162816,73163408,+,MER4-int,LTR,ERV1,1,686,-5912,73162816,73169320 +3 + chr12 73203815 73203886 chr12,73203744,73203886,+,MIRb,SINE,MIR,26,181,-87,73203719,73203973 -5 + chr12 73207860 73208096 chr12,73207860,73208096,-,L1P1,LINE,L1,-1356,4790,4553,73206504,73212648 -6 - chr12 73208091 73208317 chr12,73208091,73208531,+,L1P1,LINE,L1,4798,5236,-910,73203294,73209441 +5 + chr12 73767616 73767634 chr12,73767078,73767634,-,MER51A,LTR,ERV1,0,634,1,73767078,73767634 -2 - chr12 73767634 73767679 chr12,73767634,73767679,+,MER57B1,LTR,ERV1,290,330,-71,73767345,73767750 +6 + chr12 73767680 73767747 chr12,73767680,73769115,+,MER57A-int,LTR,ERV1,57,1579,-4608,73767624,73773723 +4 + chr12 73771586 73771727 chr12,73771547,73772081,-,LTR27,LTR,ERV1,-11,490,2,73771536,73772082 -3 - chr12 73906940 73906989 chr12,73906893,73906989,+,LTR33B,LTR,ERVL,1,106,-397,73906893,73907386 +1 + chr12 73913957 73914023 chr12,73913867,73914527,+,MamGypLTR1c,LTR,Gypsy,86,800,-3,73913782,73914530 +3 + chr12 73919256 73919300 chr12,73919256,73919300,+,(ATAT)n,Simple_repeat,Simple_repeat,1,45,0,73919256,73919300 +6 + chr12 74039086 74039457 chr12,74038997,74040067,+,HERVL-int,LTR,ERVL,4600,5654,0,74034398,74040067 +1 + chr12 74133166 74133216 chr12,74131706,74133262,-,L1PA16,LINE,L1,0,6166,4610,74131706,74137871 +5 - chr12 74157790 74157884 chr12,74156769,74158337,-,L1MDa,LINE,L1,-4980,1653,39,74151789,74158375 +3 - chr12 74194074 74194153 chr12,74193844,74194426,-,L1PA10,LINE,L1,0,6168,5571,74193844,74199996 +3 - chr12 74199572 74199913 chr12,74199523,74199913,-,THE1B,LTR,ERVL-MaLR,0,364,1,74199523,74199913 +5 - chr12 74199913 74200073 chr12,74199913,74201455,-,THE1B-int,LTR,ERVL-MaLR,0,1580,3,74199913,74201457 +2 - chr12 74250517 74250541 chr12,74250517,74250541,+,(TC)n,Simple_repeat,Simple_repeat,1,24,0,74250517,74250541 -6 + chr12 74269309 74269453 chr12,74264745,74272588,+,HERVE_a-int,LTR,ERV1,1,7847,0,74264745,74272588 -3 + chr12 74283594 74283669 chr12,74283433,74283974,+,L2a,LINE,L2,2807,3426,0,74280627,74283974 -1 + chr12 74285025 74285093 chr12,74284950,74285613,-,MLT2F,LTR,ERVL,-2,661,37,74284948,74285649 +5 - chr12 74285698 74285795 chr12,74285657,74285795,-,MLT1G3,LTR,ERVL-MaLR,-9,480,331,74285648,74286125 +5 - chr12 74285822 74285946 chr12,74285822,74286028,-,MLT1G3,LTR,ERVL-MaLR,-217,378,92,74285605,74286119 +2 - chr12 74306558 74306669 chr12,74305675,74306714,-,Tigger1,DNA,TcMar-Tigger,-1359,1059,2,74304316,74306715 +3 - chr12 74321535 74321694 chr12,74321390,74322121,-,LTR27B,LTR,ERV1,-424,839,1,74320966,74322121 +3 - chr12 74377563 74377632 chr12,74377375,74377747,-,L2c,LINE,L2,0,3387,3022,74377375,74380768 +3 - chr12 75020969 75021084 chr12,75020729,75021169,+,MLT2A1,LTR,ERVL,1,444,0,75020729,75021169 +1 + chr12 75025074 75025185 chr12,75025054,75025329,-,AluJo,SINE,Alu,-16,296,13,75025038,75025341 -3 - chr12 75025974 75026019 chr12,75025941,75026019,-,L2b,LINE,L2,-8,3367,3296,75025933,75029314 -1 - chr12 75234740 75235117 chr12,75234335,75235407,+,L3,LINE,CR1,1726,2876,-1223,75232610,75236630 +1 + chr12 75250763 75250970 chr12,75250763,75250970,-,LTR88b,LTR,Gypsy?,-589,248,34,75250174,75251003 -6 - chr12 75295043 75295084 chr12,75294757,75295084,-,LTR48,LTR,ERV1,-58,729,447,75294699,75295530 -1 - chr12 75295136 75295162 chr12,75295136,75295162,+,(AAC)n,Simple_repeat,Simple_repeat,1,26,0,75295136,75295162 +6 + chr12 75483454 75483538 chr12,75483410,75483538,-,LTR16D,LTR,ERVL,0,651,522,75483410,75484059 +5 - chr12 75483547 75483867 chr12,75483547,75483867,-,L2c,LINE,L2,-71,3316,2984,75483476,75486850 +6 - chr12 75483870 75484275 chr12,75483870,75484275,-,L4_B_Mam,LINE,RTE-X,-3092,1849,1398,75480778,75485672 +6 - chr12 75484303 75484468 chr12,75484303,75484468,-,MIR,SINE,MIR,-39,223,56,75484264,75484523 +6 - chr12 75484504 75484890 chr12,75484504,75484896,-,LTR7,LTR,ERV1,-2,448,1,75484502,75484896 +2 - chr12 75489776 75489820 chr12,75489286,75490176,+,L2a,LINE,L2,2142,3240,-186,75487145,75490362 -1 + chr12 75631235 75631314 chr12,75631235,75631411,+,MIRc,SINE,MIR,45,212,-56,75631191,75631467 -2 + chr12 75690742 75690859 chr12,75690742,75691506,+,Charlie21a,DNA,hAT-Charlie,223,1029,-184,75690520,75691690 -2 + chr12 75692105 75692358 chr12,75692084,75692616,+,MamGypLTR3,LTR,Gypsy,403,927,-54,75691682,75692670 -1 + chr12 75694323 75694351 chr12,75694323,75694494,-,LTR78,LTR,ERV1,0,1304,1132,75694323,75695625 +2 - chr12 75694627 75694770 chr12,75694627,75695408,+,FordPrefect,DNA,hAT-Tip100,850,1680,-3,75693778,75695411 -2 + chr12 75694857 75694975 chr12,75694627,75695408,+,FordPrefect,DNA,hAT-Tip100,850,1680,-3,75693778,75695411 -3 + chr12 75698707 75698816 chr12,75698578,75699717,+,L1ME3B,LINE,L1,399,1491,-4924,75698180,75704641 -1 + chr12 75777500 75777530 chr12,75777467,75777561,+,L2b,LINE,L2,3268,3367,-8,75774200,75777569 -3 + chr12 75967052 75967062 chr12,75967052,75967236,-,MIR,SINE,MIR,-30,232,46,75967022,75967281 -5 - chr12 75983721 75984015 chr12,75983502,75984058,+,L2a,LINE,L2,2397,3023,-396,75981106,75984454 -1 + chr12 76030575 76030594 chr12,76030575,76030858,+,(TGCGGC)n,Simple_repeat,Simple_repeat,1,287,0,76030575,76030858 +4 + chr12 76031136 76031188 chr12,76031136,76031188,+,(TGC)n,Simple_repeat,Simple_repeat,1,52,0,76031136,76031188 +6 + chr12 76292116 76292127 chr12,76291719,76292127,+,LTR7,LTR,ERV1,1,450,0,76291719,76292127 +2 + chr12 76292127 76292270 chr12,76292127,76292576,+,HERVH-int,LTR,ERV1,1,459,-7254,76292127,76299830 +4 + chr12 76293813 76294005 chr12,76292636,76296935,+,HERVH-int,LTR,ERV1,801,5364,-1290,76291836,76298225 +3 + chr12 76302762 76302813 chr12,76302558,76302962,+,THE1D,LTR,ERVL-MaLR,1,381,0,76302558,76302962 +5 + chr12 76304537 76305013 chr12,76304537,76305013,+,MLT1J,LTR,ERVL-MaLR,8,505,-7,76304530,76305020 +6 + chr12 76305070 76305112 chr12,76305070,76305112,+,A-rich,Low_complexity,Low_complexity,1,44,0,76305070,76305112 +6 + chr12 76562294 76562358 chr12,76562209,76562495,-,Chap1_Mam,DNA,hAT-Charlie,-40,302,7,76562169,76562501 -1 - chr12 76615303 76615479 chr12,76615098,76615479,+,MSTA,LTR,ERVL-MaLR,4,428,0,76615095,76615479 +2 + chr12 76880013 76880185 chr12,76880013,76880185,-,MER20,DNA,hAT-Charlie,0,219,30,76880013,76880214 -6 - chr12 77219603 77219666 chr12,77219309,77219666,-,L2,LINE,L2,-763,2656,2279,77218546,77221944 +5 - chr12 77324875 77324931 chr12,77324875,77324931,+,(CGCGCT)n,Simple_repeat,Simple_repeat,1,60,0,77324875,77324931 +6 + chr12 77324939 77324984 chr12,77324939,77324984,+,(GGC)n,Simple_repeat,Simple_repeat,1,50,0,77324939,77324984 +6 + chr12 77325015 77325051 chr12,77325015,77325051,+,(CCGCTC)n,Simple_repeat,Simple_repeat,1,36,0,77325015,77325051 +6 + chr12 77390471 77390864 chr12,77390342,77390949,+,LTR48B,LTR,ERV1,1,644,0,77390342,77390949 +5 + chr12 77783543 77783576 chr12,77783543,77783869,-,L2c,LINE,L2,-159,3228,2910,77783384,77786778 -5 - chr12 78091514 78091737 chr12,78091514,78091813,+,AluYa5,SINE,Alu,1,299,-12,78091514,78091825 -1 + chr12 78327325 78327376 chr12,78327325,78327395,+,L2a,LINE,L2,3290,3420,-6,78324036,78327401 -2 + chr12 78396607 78396683 chr12,78396433,78396683,-,MLT1J2,LTR,ERVL-MaLR,-166,282,31,78396267,78396713 -1 - chr12 78423192 78423286 chr12,78422985,78423368,+,MSTA,LTR,ERVL-MaLR,1,428,0,78422985,78423368 +3 + chr12 78426826 78426887 chr12,78426747,78426891,-,L3,LINE,CR1,-1376,2723,2576,78425371,78429466 +5 - chr12 78449135 78449201 chr12,78449135,78449717,-,L2a,LINE,L2,-5,3421,2783,78449130,78452499 +2 - chr12 78451826 78451943 chr12,78451826,78452073,+,MIRc,SINE,MIR,39,268,0,78451788,78452073 -2 + chr12 78468675 78468713 chr12,78468675,78468713,+,GA-rich,Low_complexity,Low_complexity,1,38,0,78468675,78468713 +4 + chr12 78477393 78477489 chr12,78477293,78484883,+,HERVIP10B3-int,LTR,ERV1,2,7599,-4,78477292,78484887 +5 + chr12 78482785 78483019 chr12,78477293,78484883,+,HERVIP10B3-int,LTR,ERV1,2,7599,-4,78477292,78484887 +5 + chr12 78499300 78499492 chr12,78499220,78499515,+,AluSz,SINE,Alu,1,303,-9,78499220,78499524 -5 + chr12 78960459 78960491 chr12,78960459,78960491,+,(AAC)n,Simple_repeat,Simple_repeat,1,33,0,78960459,78960491 -6 + chr12 79045551 79045644 chr12,79039621,79045645,-,L1PA2,LINE,L1,0,6155,126,79039621,79045770 +1 - chr12 79341308 79341409 chr12,79341308,79341630,-,MLT1J1,LTR,ERVL-MaLR,-121,323,3,79341187,79341632 +2 - chr12 79392803 79393843 chr12,79392803,79393843,-,L1PA6,LINE,L1,0,6154,5113,79392803,79398955 +5 - chr12 79455315 79455460 chr12,79455282,79455683,-,MLT1K,LTR,ERVL-MaLR,-53,542,130,79455229,79455812 +1 - chr12 79503169 79503396 chr12,79502872,79503448,+,L1PREC2,LINE,L1,7,582,-7573,79502866,79511021 -1 + chr12 79540203 79540298 chr12,79539847,79540298,+,LTR7,LTR,ERV1,1,448,-2,79539847,79540300 +1 + chr12 79540300 79540446 chr12,79540300,79543266,+,HERVH-int,LTR,ERV1,1,2987,-4726,79540300,79547992 +1 + chr12 79542206 79542410 chr12,79540300,79543266,+,HERVH-int,LTR,ERV1,1,2987,-4726,79540300,79547992 +1 + chr12 79545530 79545558 chr12,79545174,79545625,+,LTR7,LTR,ERV1,1,448,-2,79545174,79545627 +1 + chr12 79546066 79546084 chr12,79546018,79546084,-,UCON132b,DNA,hAT-Tip100,-41,107,45,79545977,79546128 -2 - chr12 79546312 79546554 chr12,79546312,79546839,-,MER41A,LTR,ERV1,0,554,19,79546312,79546857 -5 - chr12 79819219 79819351 chr12,79819219,79819351,-,MIR3,SINE,MIR,-13,195,41,79819206,79819391 +6 - chr12 79823778 79823888 chr12,79823592,79823888,-,AluJb,SINE,Alu,-11,301,1,79823581,79823888 -1 - chr12 79824990 79825145 chr12,79824983,79825145,-,MIRc,SINE,MIR,-51,217,48,79824932,79825192 -2 - chr12 79934901 79934922 chr12,79934884,79934922,+,(CGCTTC)n,Simple_repeat,Simple_repeat,1,40,0,79934884,79934922 +1 + chr12 79940413 79940640 chr12,79940413,79940640,+,MamGypLTR1a,LTR,Gypsy,254,493,-310,79940160,79940950 +6 + chr12 79940656 79940862 chr12,79940656,79940862,-,L2a,LINE,L2,-2,3424,3207,79940654,79944068 -6 - chr12 79940946 79941067 chr12,79940946,79941067,-,Arthur1A,DNA,hAT-Tip100,-3,174,50,79940943,79941116 -6 - chr12 79941118 79941416 chr12,79941118,79941416,+,AluSc,SINE,Alu,1,300,-9,79941118,79941425 +6 + chr12 79941546 79941570 chr12,79941546,79941570,+,(TCAT)n,Simple_repeat,Simple_repeat,1,25,0,79941546,79941570 +6 + chr12 79941757 79942340 chr12,79941757,79942340,+,L1MC5a,LINE,L1,2150,2764,-13,79939608,79942353 +6 + chr12 79942381 79942587 chr12,79942381,79942587,+,MER20,DNA,hAT-Charlie,3,218,-1,79942379,79942588 +6 + chr12 80583683 80584243 chr12,80583641,80584245,-,MLT1E3,LTR,ERVL-MaLR,0,624,20,80583641,80584264 +5 - chr12 80586647 80586674 chr12,80586647,80586674,+,(TCT)n,Simple_repeat,Simple_repeat,1,27,0,80586647,80586674 -6 + chr12 80586704 80586758 chr12,80586704,80587034,+,MER2,DNA,TcMar-Tigger,1,344,-1,80586704,80587035 -2 + chr12 80769635 80770209 chr12,80769635,80770209,-,L1MEh,LINE,L1,-1547,688,80,80768088,80770288 -5 - chr12 80770574 80770597 chr12,80770574,80770597,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,80770574,80770597 +6 + chr12 81094375 81094479 chr12,81094316,81094479,-,L1ME3Cz,LINE,L1,-9,988,808,81094307,81095286 +5 - chr12 81104769 81104828 chr12,81104025,81104876,+,L1MDa,LINE,L1,16,1030,-5603,81104010,81110479 -3 + chr12 81124399 81124513 chr12,81124329,81124700,+,L2,LINE,L2,1093,1457,-1962,81123237,81126662 -3 + chr12 81125584 81125820 chr12,81125377,81125820,+,L2,LINE,L2,1992,2455,-964,81123386,81126784 -4 + chr12 81270675 81270781 chr12,81270335,81270781,+,MLT1C,LTR,ERVL-MaLR,1,467,0,81270335,81270781 +1 + chr12 81270781 81270806 chr12,81270781,81270806,-,L1ME3,LINE,L1,-712,6541,6516,81270069,81277321 -6 - chr12 81270838 81270849 chr12,81270838,81271265,-,L1ME3,LINE,L1,-3634,3603,3085,81267204,81274349 -4 - chr12 81279185 81279305 chr12,81278982,81279380,+,MLT1B,LTR,ERVL-MaLR,1,390,0,81278982,81279380 +1 + chr12 81292339 81292787 chr12,81292339,81292787,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,81292339,81292787 +6 + chr12 81296696 81296769 chr12,81296696,81296846,+,MIR3,SINE,MIR,6,166,-42,81296691,81296888 +4 + chr12 81378042 81378205 chr12,81377850,81378283,+,MLT1C,LTR,ERVL-MaLR,20,467,0,81377831,81378283 +1 + chr12 81430524 81430559 chr12,81430524,81430559,+,(CT)n,Simple_repeat,Simple_repeat,1,35,0,81430524,81430559 +6 + chr12 81471162 81471308 chr12,81471092,81471462,-,AluJr,SINE,Alu,0,312,2,81471092,81471463 -3 - chr12 81472554 81472623 chr12,81472554,81472623,+,MamRep605,LTR?,LTR?,692,760,-89,81471863,81472712 +6 + chr12 81472744 81472786 chr12,81472744,81472786,+,(AACAA)n,Simple_repeat,Simple_repeat,1,43,0,81472744,81472786 +6 + chr12 81954090 81954155 chr12,81954090,81954224,-,LTR79,LTR,ERVL,-265,262,125,81953825,81954348 -4 - chr12 81954248 81954337 chr12,81954243,81954337,-,MER5B,DNA,hAT-Charlie,-63,115,20,81954180,81954356 -2 - chr12 82481207 82481480 chr12,82481207,82481509,+,AluSq2,SINE,Alu,1,305,-8,82481207,82481517 -2 + chr12 82481960 82482028 chr12,82481928,82482105,-,L2c,LINE,L2,-5,3382,3191,82481923,82485295 +3 - chr12 82506101 82506188 chr12,82506049,82506382,+,L2c,LINE,L2,3042,3378,-9,82503008,82506391 -1 + chr12 82513366 82513678 chr12,82513366,82513678,+,AluSx1,SINE,Alu,1,310,-2,82513366,82513680 +6 + chr12 82514157 82514386 chr12,82514157,82514386,+,Charlie8,DNA,hAT-Charlie,171,416,-2012,82513987,82516398 +6 + chr12 82514553 82514717 chr12,82514553,82514717,+,MIR,SINE,MIR,68,232,-30,82514486,82514747 +6 + chr12 82514957 82515004 chr12,82514957,82515004,-,L3,LINE,CR1,0,4099,4048,82514957,82519051 -6 - chr12 82515004 82515309 chr12,82515004,82515309,-,MER58B,DNA,hAT-Charlie,0,341,26,82515004,82515334 -6 - chr12 82515317 82515424 chr12,82515317,82515424,+,MER5A,DNA,hAT-Charlie,45,146,-43,82515273,82515467 +6 + chr12 82515708 82515817 chr12,82515708,82516019,+,L1ME3E,LINE,L1,5644,5951,-1931,82510065,82517950 +5 + chr12 83171590 83171676 chr12,83171590,83171687,-,L2b,LINE,L2,0,3375,3272,83171590,83174958 -1 - chr12 83172686 83172711 chr12,83172686,83172711,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,83172686,83172711 +6 + chr12 83661709 83661719 chr12,83661709,83661998,+,L2c,LINE,L2,3097,3385,-2,83658613,83662000 -1 + chr12 85318060 85318115 chr12,85312419,85318459,-,L1PA2,LINE,L1,0,6155,126,85312419,85318584 -1 - chr12 85342472 85342784 chr12,85342368,85342784,+,MLT1J2,LTR,ERVL-MaLR,16,444,0,85342353,85342784 +2 + chr12 85959023 85959088 chr12,85959023,85959088,+,(ATACA)n,Simple_repeat,Simple_repeat,1,65,0,85959023,85959088 +6 + chr12 85959394 85959447 chr12,85959394,85959447,+,(TTTTCTC)n,Simple_repeat,Simple_repeat,1,55,0,85959394,85959447 +6 + chr12 85959447 85959458 chr12,85959447,85959458,+,(TTTTTC)n,Simple_repeat,Simple_repeat,2,65,0,85959446,85959458 +6 + chr12 86599578 86599661 chr12,86599561,86599717,-,MIRc,SINE,MIR,-3,265,81,86599558,86599797 +5 - chr12 87042058 87042423 chr12,87042058,87042654,+,MLT1F2,LTR,ERVL-MaLR,1,557,-3,87042058,87042657 +5 + chr12 87817112 87817146 chr12,87817028,87817146,-,MLT1I,LTR,ERVL-MaLR,-27,421,320,87817001,87817465 -2 - chr12 87817442 87817557 chr12,87817245,87817557,-,AluY,SINE,Alu,-3,308,1,87817242,87817557 -2 - chr12 87817766 87817831 chr12,87817766,87818204,+,MLT1C,LTR,ERVL-MaLR,6,467,0,87817761,87818204 +5 + chr12 89010874 89010993 chr12,89010874,89010993,-,MER103C,DNA,hAT-Charlie,-51,246,114,89010823,89011106 +6 - chr12 89011078 89011520 chr12,89011078,89011520,-,MLT1D,LTR,ERVL-MaLR,0,505,1,89011078,89011520 +6 - chr12 89011566 89011902 chr12,89011566,89011902,-,L2b,LINE,L2,-1,3374,3039,89011565,89014940 +6 - chr12 89011929 89011991 chr12,89011929,89011991,+,MIRb,SINE,MIR,179,240,-28,89011751,89012019 -6 + chr12 89012685 89012985 chr12,89012685,89012985,+,L2a,LINE,L2,3112,3426,0,89009574,89012985 -6 + chr12 89014692 89014766 chr12,89014591,89014766,+,L3,LINE,CR1,3896,4088,-11,89010696,89014777 -4 + chr12 89048249 89048298 chr12,89048249,89048298,-,MIR,SINE,MIR,-4,258,208,89048245,89048505 +6 - chr12 89309459 89309553 chr12,89309459,89309721,+,MLT1I,LTR,ERVL-MaLR,123,411,0,89309337,89309721 -1 + chr12 89351574 89351620 chr12,89351574,89351620,+,(CGCGCC)n,Simple_repeat,Simple_repeat,1,48,0,89351574,89351620 +6 + chr12 89352703 89352748 chr12,89352703,89352748,+,GA-rich,Low_complexity,Low_complexity,1,45,0,89352703,89352748 +6 + chr12 89368425 89368617 chr12,89368425,89368617,-,LTR16D,LTR,ERVL,-1,650,446,89368424,89369062 -6 - chr12 89372111 89372252 chr12,89372111,89372252,+,MIR,SINE,MIR,116,262,0,89371996,89372252 +6 + chr12 89540108 89540238 chr12,89539825,89540238,-,LTR79,LTR,ERVL,0,527,68,89539825,89540305 -2 - chr12 89540653 89541734 chr12,89540653,89541734,+,LTR78,LTR,ERV1,210,1288,-16,89540444,89541750 +6 + chr12 89542539 89543007 chr12,89542539,89543007,-,LTR33,LTR,ERVL,-18,497,1,89542521,89543007 -6 - chr12 89543359 89543430 chr12,89543359,89543430,-,MIR,SINE,MIR,-66,196,120,89543293,89543549 -6 - chr12 89543712 89543839 chr12,89543712,89543839,+,MIRc,SINE,MIR,26,158,-104,89543687,89543943 +6 + chr12 89544121 89544278 chr12,89544121,89544278,+,MER117,DNA,hAT-Charlie,1,169,-28,89544121,89544306 +5 + chr12 89544203 89544278 chr12,89544121,89544278,+,MER117,DNA,hAT-Charlie,1,169,-28,89544121,89544306 -5 + chr12 89544374 89544464 chr12,89544374,89544464,+,MER81,DNA,hAT-Blackjack,1,91,-23,89544374,89544487 +6 + chr12 89544374 89544464 chr12,89544374,89544464,+,MER81,DNA,hAT-Blackjack,1,91,-23,89544374,89544487 -6 + chr12 89544708 89545134 chr12,89544708,89545134,-,LTR33,LTR,ERVL,-19,496,30,89544689,89545163 -6 - chr12 89545404 89545583 chr12,89545404,89545583,-,ERVL-E-int,LTR,ERVL,-440,5227,5040,89544964,89550622 -6 - chr12 89545583 89545747 chr12,89545583,89545747,-,ERVL-E-int,LTR,ERVL,-628,5086,4918,89544955,89550664 -6 - chr12 89545858 89546470 chr12,89545858,89546470,-,ERVL-E-int,LTR,ERVL,-714,4512,3887,89545144,89550356 -6 - chr12 89546470 89546834 chr12,89546470,89546834,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,89546470,89546834 -6 - chr12 89546834 89547174 chr12,89546834,89547174,-,ERVL-E-int,LTR,ERVL,-1646,4021,3648,89545188,89550821 -6 - chr12 89547838 89548003 chr12,89547838,89548003,+,L1ME3A,LINE,L1,6005,6172,-1,89541834,89548004 +6 + chr12 89561183 89561275 chr12,89561183,89561358,+,MLT1K,LTR,ERVL-MaLR,102,293,-302,89561082,89561660 +4 + chr12 89593796 89593930 chr12,89593796,89593930,-,MIR3,SINE,MIR,-39,169,30,89593757,89593959 -6 - chr12 89709270 89709343 chr12,89709270,89709343,+,(CGC)n,Simple_repeat,Simple_repeat,1,74,0,89709270,89709343 +6 + chr12 89709388 89709415 chr12,89709388,89709415,+,(GC)n,Simple_repeat,Simple_repeat,1,27,0,89709388,89709415 +6 + chr12 89709427 89709462 chr12,89709427,89709462,+,G-rich,Low_complexity,Low_complexity,1,37,0,89709427,89709462 +6 + chr12 89709929 89709970 chr12,89709929,89709970,+,G-rich,Low_complexity,Low_complexity,1,43,0,89709929,89709970 +6 + chr12 89712016 89712326 chr12,89712016,89712326,+,AluSc5,SINE,Alu,2,309,0,89712015,89712326 +6 + chr12 89882683 89882767 chr12,89882683,89882767,-,Helitron2Na_Mam,RC?,Helitron?,-46,278,198,89882637,89882964 -6 - chr12 90107739 90107804 chr12,90107624,90107804,-,MIRb,SINE,MIR,-14,254,42,90107610,90107845 -1 - chr12 90107806 90107821 chr12,90107806,90107976,+,MamRep605,LTR?,LTR?,298,469,-380,90107509,90108356 +4 + chr12 90280894 90280952 chr12,90280694,90281069,+,THE1C,LTR,ERVL-MaLR,1,373,-2,90280694,90281071 +1 + chr12 90282461 90282558 chr12,90281071,90282614,+,THE1-int,LTR,ERVL-MaLR,1,1578,-2,90281071,90282616 +3 + chr12 90290784 90290881 chr12,90290732,90291041,-,AluSc,SINE,Alu,0,309,2,90290732,90291042 -3 - chr12 90293318 90293425 chr12,90293217,90293425,-,MER20,DNA,hAT-Charlie,-3,216,1,90293214,90293425 -1 - chr12 90293441 90293507 chr12,90293441,90293507,+,MIR3,SINE,MIR,124,197,-11,90293318,90293518 +6 + chr12 90296085 90296164 chr12,90295672,90296164,-,L1MA3,LINE,L1,-35,6270,5784,90295637,90301947 -5 - chr12 90296152 90296247 chr12,90296152,90296703,-,L1ME1,LINE,L1,-59,6120,5572,90296093,90302274 -5 - chr12 90300277 90300340 chr12,90300277,90300568,+,AluJr,SINE,Alu,1,286,-26,90300277,90300594 +5 + chr12 90809452 90809600 chr12,90809452,90809600,-,L2b,LINE,L2,-1167,2252,2106,90808285,90811705 -6 - chr12 90809618 90809680 chr12,90809618,90809680,+,(AATA)n,Simple_repeat,Simple_repeat,1,62,0,90809618,90809680 +6 + chr12 90810522 90810636 chr12,90810485,90810636,+,MLT1I,LTR,ERVL-MaLR,180,337,-74,90810306,90810710 +2 + chr12 90918023 90918050 chr12,90917467,90918222,-,LTR60B,LTR,ERV1,0,765,2,90917467,90918223 -1 - chr12 90946475 90946491 chr12,90946475,90946761,-,AluJb,SINE,Alu,-17,295,2,90946458,90946762 -4 - chr12 90947655 90948021 chr12,90947599,90948021,+,MER48,LTR,ERV1,4,407,0,90947596,90948021 +2 + chr12 90948379 90948480 chr12,90948379,90948480,+,MIRb,SINE,MIR,118,220,-48,90948262,90948528 +6 + chr12 91362362 91362413 chr12,91362362,91362457,+,MamTip2,DNA,hAT-Tip100,74,170,-135,91362289,91362592 +4 + chr12 91367931 91368047 chr12,91367914,91368047,-,AluJr,SINE,Alu,-181,131,1,91367733,91368047 -2 - chr12 91634887 91635553 chr12,91633760,91635553,+,LTR12C,LTR,ERV1,2,1579,0,91633759,91635553 +1 + chr12 91680131 91680293 chr12,91679985,91680315,-,AluSc8,SINE,Alu,-2,309,1,91679983,91680315 -1 - chr12 91879772 91880189 chr12,91879772,91880189,-,MLT2D,LTR,ERVL,0,414,1,91879772,91880189 -6 - chr12 91880246 91880392 chr12,91880246,91880392,+,MIRb,SINE,MIR,37,198,-70,91880210,91880462 +6 + chr12 91901458 91901489 chr12,91900370,91901616,+,THE1D-int,LTR,ERVL-MaLR,1,1631,0,91900370,91901616 +1 + chr12 91901835 91901921 chr12,91901616,91902003,+,THE1D,LTR,ERVL-MaLR,1,381,0,91901616,91902003 +3 + chr12 91905296 91905484 chr12,91905148,91905484,-,MLT1O,LTR,ERVL-MaLR,-205,337,9,91904943,91905492 -2 - chr12 92145573 92145597 chr12,92145535,92145597,+,(GGC)n,Simple_repeat,Simple_repeat,1,66,0,92145535,92145597 +1 + chr12 92146391 92146445 chr12,92146391,92146445,+,(GTGCG)n,Simple_repeat,Simple_repeat,1,56,0,92146391,92146445 +6 + chr12 92167119 92167372 chr12,92166894,92167372,-,L4_C_Mam,LINE,RTE-X,-1555,3583,3079,92165339,92170450 -2 - chr12 92167529 92167560 chr12,92167529,92167589,+,(AT)n,Simple_repeat,Simple_repeat,1,60,0,92167529,92167589 +5 + chr12 92184878 92185432 chr12,92184878,92185432,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,92184878,92185432 -6 - chr12 92185811 92185862 chr12,92185811,92185862,+,(TCC)n,Simple_repeat,Simple_repeat,1,53,0,92185811,92185862 +6 + chr12 92187174 92187358 chr12,92187174,92187358,+,MER5B,DNA,hAT-Charlie,1,178,0,92187174,92187358 +6 + chr12 92187750 92187925 chr12,92187750,92187925,-,MIRb,SINE,MIR,-13,195,13,92187737,92187937 -6 - chr12 92187917 92187981 chr12,92187917,92187981,+,MIRb,SINE,MIR,198,260,-8,92187720,92187989 +6 + chr12 92188099 92188220 chr12,92188099,92188220,+,FLAM_A,SINE,Alu,1,121,-21,92188099,92188241 +6 + chr12 92188505 92188693 chr12,92188505,92188693,-,MIRc,SINE,MIR,-44,224,25,92188461,92188717 -6 - chr12 92188706 92189032 chr12,92188706,92189032,+,L4_C_Mam,LINE,RTE-X,4600,4945,-193,92184107,92189225 +6 + chr12 92247756 92247819 chr12,92247708,92247819,-,Charlie18a,DNA,hAT-Charlie,-224,118,8,92247484,92247826 +5 - chr12 92268921 92268979 chr12,92268906,92269123,-,MIR,SINE,MIR,-16,246,2,92268890,92269124 +3 - chr12 92421531 92421835 chr12,92421421,92421865,+,MLT2B1,LTR,ERVL,1,471,-49,92421421,92421914 +1 + chr12 92482018 92482127 chr12,92481955,92482127,+,MamGypLTR3a,LTR,Gypsy,158,352,-629,92481798,92482756 +2 + chr12 92482361 92482585 chr12,92482361,92482585,+,MamGypLTR3a,LTR,Gypsy,640,868,-113,92481722,92482698 +6 + chr12 92482723 92482932 chr12,92482723,92482932,+,MLT1F2,LTR,ERVL-MaLR,211,404,-165,92482513,92483097 +6 + chr12 92482932 92483314 chr12,92482932,92483314,+,MLT1B,LTR,ERVL-MaLR,1,387,-3,92482932,92483317 +6 + chr12 92483314 92483458 chr12,92483314,92483458,+,MLT1F2,LTR,ERVL-MaLR,398,543,-17,92482917,92483475 +6 + chr12 92483472 92483804 chr12,92483472,92483804,+,Tigger3a,DNA,TcMar-Tigger,5,347,-1,92483468,92483805 +5 + chr12 92484117 92484229 chr12,92484117,92484229,+,Arthur1C,DNA,hAT-Tip100,11,127,-236,92484107,92484465 +6 + chr12 92484230 92484412 chr12,92484230,92484412,+,Arthur1C,DNA,hAT-Tip100,165,351,-12,92484066,92484424 +6 + chr12 92484939 92484972 chr12,92484939,92484972,+,(ATTTT)n,Simple_repeat,Simple_repeat,1,35,0,92484939,92484972 +6 + chr12 92485798 92485923 chr12,92485798,92485923,+,AluSz6,SINE,Alu,2,125,-187,92485797,92486110 +6 + chr12 92487086 92487129 chr12,92487086,92487129,-,L4_A_Mam,LINE,RTE-X,-6,4984,4941,92487080,92492069 -6 - chr12 92487793 92488088 chr12,92487793,92488088,-,AluSx1,SINE,Alu,-17,295,1,92487776,92488088 -6 - chr12 92489154 92489334 chr12,92489154,92489334,+,L2a,LINE,L2,3147,3394,-32,92486008,92489366 +6 + chr12 92489346 92489375 chr12,92489346,92489375,+,(ATC)n,Simple_repeat,Simple_repeat,1,30,0,92489346,92489375 +6 + chr12 92489430 92489595 chr12,92489430,92489595,-,MIR,SINE,MIR,-27,235,55,92489403,92489649 -6 - chr12 92489737 92489815 chr12,92489737,92489815,+,MIRc,SINE,MIR,2,79,-189,92489736,92490004 +6 + chr12 92490105 92490333 chr12,92490105,92490333,+,MLT1K,LTR,ERVL-MaLR,337,569,-26,92489769,92490359 +6 + chr12 92490384 92490679 chr12,92490384,92490679,+,AluSx4,SINE,Alu,1,295,-15,92490384,92490694 +6 + chr12 92491207 92491415 chr12,92491207,92491415,+,MIRc,SINE,MIR,3,222,-46,92491205,92491461 +6 + chr12 92491764 92491789 chr12,92491764,92491789,+,(CTG)n,Simple_repeat,Simple_repeat,1,26,0,92491764,92491789 +6 + chr12 92999218 92999335 chr12,92999184,92999541,-,AluJb,SINE,Alu,0,312,1,92999184,92999541 -1 - chr12 93003880 93003973 chr12,93003880,93003983,-,MIRb,SINE,MIR,-10,258,157,93003870,93004139 -4 - chr12 93004571 93004598 chr12,93004571,93004793,+,AluJb,SINE,Alu,86,307,-5,93004486,93004798 -2 + chr12 93006175 93006233 chr12,93006175,93006233,-,L2b,LINE,L2,-188,3187,3130,93005987,93009362 -6 - chr12 93019411 93019733 chr12,93019136,93019733,-,Tigger12c,DNA,TcMar-Tigger,-1,733,123,93019135,93019855 -2 - chr12 93019799 93019820 chr12,93019799,93019990,-,MIRb,SINE,MIR,0,268,68,93019799,93020057 -5 - chr12 93090522 93090628 chr12,93090424,93090629,+,MIRc,SINE,MIR,43,255,-13,93090382,93090642 +1 + chr12 93091340 93091387 chr12,93091304,93091387,-,MIR1_Amn,SINE,MIR,-41,167,86,93091263,93091472 -2 - chr12 93096115 93096236 chr12,93096089,93096392,-,AluSx,SINE,Alu,-8,304,2,93096081,93096393 -3 - chr12 93106322 93106414 chr12,93106319,93106436,-,AluJb,SINE,Alu,-195,117,1,93106124,93106436 -3 - chr12 93107308 93107407 chr12,93107295,93107407,-,MIR,SINE,MIR,-118,144,23,93107177,93107429 -2 - chr12 93130988 93131088 chr12,93130976,93131088,+,L2c,LINE,L2,3283,3386,-1,93127694,93131089 -4 + chr12 93131087 93131133 chr12,93131087,93131167,-,L2b,LINE,L2,-57,3330,3252,93131030,93134418 +2 - chr12 93139048 93139132 chr12,93139017,93139160,+,MIRb,SINE,MIR,18,164,-98,93139000,93139258 -1 + chr12 93174380 93174609 chr12,93174380,93174609,-,L2c,LINE,L2,-1054,2365,2141,93173326,93176749 -6 - chr12 93190267 93190412 chr12,93189982,93190600,+,MER39,LTR,ERV1,1,705,-2,93189982,93190602 -3 + chr12 93215582 93215679 chr12,93210440,93215718,-,L1PB1,LINE,L1,-1249,5613,300,93209191,93216017 +1 - chr12 93317135 93317216 chr12,93317014,93317216,-,MIRc,SINE,MIR,-50,218,9,93316964,93317224 +5 - chr12 93339639 93339736 chr12,93339484,93339772,+,AluSp,SINE,Alu,3,291,-22,93339482,93339794 -3 + chr12 93542480 93542786 chr12,93542480,93542786,-,AluSz6,SINE,Alu,-6,306,1,93542474,93542786 +6 - chr12 93542865 93543159 chr12,93542865,93543159,-,AluJr,SINE,Alu,-16,296,2,93542849,93543160 +6 - chr12 93543161 93543306 chr12,93543161,93543306,-,LTR16A1,LTR,ERVL,-49,407,251,93543112,93543556 +6 - chr12 93543306 93543946 chr12,93543306,93543946,+,MER21C,LTR,ERVL,9,780,-158,93543298,93544104 -6 + chr12 93543946 93543992 chr12,93543946,93543992,-,LTR16A1,LTR,ERVL,-409,47,1,93543537,93543992 +6 - chr12 93543998 93544433 chr12,93543998,93544433,-,LOR1b,LTR,ERV1,0,461,1,93543998,93544433 +6 - chr12 93544436 93544704 chr12,93544436,93544704,-,LOR1-int,LTR,ERV1,-2,8118,7788,93544434,93552491 +6 - chr12 93544704 93545001 chr12,93544704,93545001,+,AluSz,SINE,Alu,1,295,-17,93544704,93545018 -6 + chr12 93545001 93545358 chr12,93545001,93545437,-,LOR1-int,LTR,ERV1,-333,7787,7362,93544668,93552798 +2 - chr12 93566744 93566892 chr12,93566728,93566892,-,MLT1K,LTR,ERVL-MaLR,-62,533,356,93566666,93567247 +4 - chr12 93567116 93567143 chr12,93567116,93567143,+,(GGT)n,Simple_repeat,Simple_repeat,1,28,0,93567116,93567143 -6 + chr12 93571265 93571308 chr12,93571264,93571308,+,(CGGCG)n,Simple_repeat,Simple_repeat,1,46,0,93571264,93571308 -4 + chr12 93708111 93708332 chr12,93708111,93708332,-,L2c,LINE,L2,-15,3372,3148,93708096,93711479 +6 - chr12 93708330 93708756 chr12,93708330,93708756,+,L2a,LINE,L2,2847,3426,0,93705484,93708756 -6 + chr12 93708791 93709036 chr12,93708791,93709036,-,MLT1A0,LTR,ERVL-MaLR,-9,356,109,93708782,93709144 +6 - chr12 93714535 93714888 chr12,93714481,93714888,-,MLT1L,LTR,ERVL-MaLR,0,610,95,93714481,93714982 +5 - chr12 93735619 93735733 chr12,93735619,93735742,+,AluJr,SINE,Alu,2,124,-188,93735618,93735930 -1 + chr12 93837291 93837561 chr12,93837277,93837561,-,AluSx,SINE,Alu,-20,292,7,93837257,93837567 -2 - chr12 93837771 93837931 chr12,93837771,93837931,-,MIR3,SINE,MIR,-37,171,7,93837734,93837937 -6 - chr12 93943545 93943603 chr12,93943355,93943782,+,MER39,LTR,ERV1,307,707,0,93943049,93943782 -1 + chr12 93945490 93945687 chr12,93945490,93945687,+,MER117,DNA,hAT-Charlie,1,197,0,93945490,93945687 +6 + chr12 93946015 93946430 chr12,93946015,93946430,+,MER34C_,LTR,ERV1,5,434,-151,93946011,93946581 +6 + chr12 93946449 93946871 chr12,93946449,93946871,-,MSTB1,LTR,ERVL-MaLR,0,432,1,93946449,93946871 -6 - chr12 93946969 93947423 chr12,93946969,93947423,+,LTR48B,LTR,ERV1,145,644,0,93946825,93947423 +6 + chr12 93947424 93947560 chr12,93947424,93947560,+,MER34C_,LTR,ERV1,440,585,0,93946985,93947560 +6 + chr12 94185972 94186044 chr12,94185972,94186090,+,FLAM_C,SINE,Alu,1,127,-16,94185972,94186106 -1 + chr12 94272171 94272298 chr12,94272171,94272298,-,MLT1J,LTR,ERVL-MaLR,-3,509,377,94272168,94272674 +6 - chr12 94272311 94272379 chr12,94272311,94272472,-,MLT1J,LTR,ERVL-MaLR,-203,309,143,94272108,94272614 +2 - chr12 94276933 94277003 chr12,94276930,94277003,+,MamRep434,DNA,TcMar-Tigger,8,83,-343,94276923,94277346 -4 + chr12 94277061 94277195 chr12,94277061,94277381,-,MLT1A0,LTR,ERVL-MaLR,-29,336,1,94277032,94277381 +1 - chr12 94277806 94277917 chr12,94277806,94277917,-,MIRb,SINE,MIR,-37,231,125,94277769,94278041 +6 - chr12 94277952 94278137 chr12,94277952,94278147,+,LTR9B,LTR,ERV1,370,560,-84,94277583,94278231 -2 + chr12 94460064 94460111 chr12,94460064,94460111,+,(GCGGCA)n,Simple_repeat,Simple_repeat,1,51,0,94460064,94460111 +6 + chr12 94461046 94461166 chr12,94461046,94461166,-,MIR,SINE,MIR,0,262,132,94461046,94461297 -6 - chr12 94461286 94461409 chr12,94461286,94461409,+,AluSx,SINE,Alu,9,133,-179,94461278,94461588 +6 + chr12 94461480 94461815 chr12,94461480,94461815,+,L1MC5a,LINE,L1,5491,5801,-2081,94455990,94463896 +6 + chr12 94462459 94462484 chr12,94462459,94463272,+,L1MB7,LINE,L1,3336,4185,-1961,94459124,94465233 +5 + chr12 94496405 94496442 chr12,94496200,94496747,+,MER34C2,LTR,ERV1,36,555,0,94496165,94496747 -1 + chr12 95380858 95380896 chr12,95379425,95380921,+,LTR12C,LTR,ERV1,3,1579,0,95379423,95380921 -1 + chr12 95387890 95387913 chr12,95387815,95387913,+,HAL1ME,LINE,L1,2364,2461,-4,95385452,95387917 -5 + chr12 95388539 95388558 chr12,95388273,95388723,+,LTR2,LTR,ERV1,1,463,0,95388273,95388723 -5 + chr12 95388599 95388723 chr12,95388273,95388723,+,LTR2,LTR,ERV1,1,463,0,95388273,95388723 -5 + chr12 95795479 95795557 chr12,95795479,95795557,-,MLT1J,LTR,ERVL-MaLR,-36,476,394,95795443,95795950 +6 - chr12 95795602 95795657 chr12,95795602,95795903,-,MLT1J,LTR,ERVL-MaLR,-198,314,3,95795404,95795905 +2 - chr12 95823177 95823307 chr12,95823177,95823383,+,MIRb,SINE,MIR,18,244,-24,95823160,95823407 +5 + chr12 95833017 95833084 chr12,95832980,95833084,-,L1MD3,LINE,L1,-488,7507,7402,95832492,95840485 +3 - chr12 96025323 96025368 chr12,96025082,96025368,-,MER103C,DNA,hAT-Charlie,0,297,1,96025082,96025368 -1 - chr12 96027947 96027971 chr12,96027947,96028192,+,MER5C,DNA,hAT-Charlie,27,313,0,96027921,96028192 +5 + chr12 96222797 96222892 chr12,96222742,96223168,-,MSTA,LTR,ERVL-MaLR,0,428,1,96222742,96223168 +5 - chr12 96422326 96422357 chr12,96422198,96422357,+,MIRb,SINE,MIR,41,238,-30,96422158,96422387 -5 + chr12 96422374 96422391 chr12,96422374,96422780,-,L4_B_Mam,LINE,RTE-X,-117,4824,4394,96422257,96427173 +2 - chr12 96429381 96429467 chr12,96429370,96429492,+,AluJr4,SINE,Alu,13,136,-176,96429358,96429668 -3 + chr12 96483450 96483465 chr12,96482986,96483465,+,ERVL-E-int,LTR,ERVL,538,1021,-4646,96482449,96488111 -4 + chr12 96483480 96483631 chr12,96483480,96483631,+,ERVL-E-int,LTR,ERVL,1057,1211,-4456,96482424,96488087 -6 + chr12 97033334 97033423 chr12,97033307,97033473,+,LTR79,LTR,ERVL,24,189,-338,97033284,97033811 +3 + chr12 97051094 97051129 chr12,97051094,97051129,+,A-rich,Low_complexity,Low_complexity,1,35,0,97051094,97051129 +5 + chr12 97150340 97150420 chr12,97150340,97150420,+,Zaphod2,DNA,hAT-Tip100,1,82,-3442,97150340,97153862 -6 + chr12 97151229 97151834 chr12,97151229,97151834,-,MER41B,LTR,ERV1,0,634,1,97151229,97151834 +6 - chr12 97151902 97152289 chr12,97151902,97152289,-,MLT1K,LTR,ERVL-MaLR,-2,593,138,97151900,97152426 +6 - chr12 97152730 97152840 chr12,97152730,97152840,-,L1ME4a,LINE,L1,-32,6092,5978,97152698,97158817 +6 - chr12 97153544 97153675 chr12,97153544,97153675,+,FLAM_A,SINE,Alu,1,132,-10,97153544,97153685 -6 + chr12 97153807 97154112 chr12,97153807,97154112,+,AluSz,SINE,Alu,1,306,-6,97153807,97154118 -6 + chr12 97276026 97276193 chr12,97276026,97276193,+,MIR3,SINE,MIR,13,193,-15,97276014,97276208 -6 + chr12 97431899 97431934 chr12,97431899,97432076,+,MIR3,SINE,MIR,24,204,-26,97431876,97432102 +4 + chr12 97492637 97492666 chr12,97492633,97492666,+,(TTGTTT)n,Simple_repeat,Simple_repeat,1,34,0,97492633,97492666 +1 + chr12 97564413 97564665 chr12,97564413,97564665,+,MIRb,SINE,MIR,3,262,-6,97564411,97564671 +6 + chr12 97564665 97564718 chr12,97564665,97564718,+,(TCTTCC)n,Simple_repeat,Simple_repeat,1,54,0,97564665,97564718 +6 + chr12 97564877 97564968 chr12,97564877,97564968,+,(ACTGTTT)n,Simple_repeat,Simple_repeat,1,101,0,97564877,97564968 +6 + chr12 98113014 98113156 chr12,98112984,98113354,-,MLT1B,LTR,ERVL-MaLR,-16,374,1,98112968,98113354 +5 - chr12 98113720 98113756 chr12,98113673,98113756,+,L2b,LINE,L2,3253,3337,-38,98110421,98113794 -4 + chr12 98200105 98200136 chr12,98200069,98200328,+,L3,LINE,CR1,3784,4088,-11,98196286,98200339 -3 + chr12 98485544 98485820 chr12,98485544,98485820,+,L1M5,LINE,L1,4942,5232,-914,98480603,98486734 -5 + chr12 98485821 98486114 chr12,98485821,98486114,+,L1ME4b,LINE,L1,26,346,-546,98485796,98486660 -6 + chr12 98486129 98486214 chr12,98486129,98486214,+,MLT1L,LTR,ERVL-MaLR,3,98,-512,98486127,98486726 -6 + chr12 98486251 98486345 chr12,98486251,98486345,-,L2a,LINE,L2,-17,3409,3318,98486234,98489662 +6 - chr12 98486428 98486498 chr12,98486428,98486498,-,MER94,DNA,hAT-Blackjack,-7,127,62,98486421,98486559 +6 - chr12 98486498 98486802 chr12,98486498,98486802,+,AluSz,SINE,Alu,1,305,-7,98486498,98486809 -6 + chr12 98486802 98486861 chr12,98486802,98486861,-,MER94,DNA,hAT-Blackjack,-73,61,4,98486729,98486864 +6 - chr12 98486976 98487039 chr12,98486976,98487039,+,L1ME3G,LINE,L1,128,189,-735,98486849,98487774 -6 + chr12 98493455 98493484 chr12,98493455,98493543,+,MIR,SINE,MIR,103,191,-71,98493353,98493614 -2 + chr12 98512973 98513927 chr12,98512861,98513927,-,L2,LINE,L2,-1736,1683,528,98511125,98514454 +5 - chr12 98516104 98516167 chr12,98516104,98516167,+,G-rich,Low_complexity,Low_complexity,1,63,0,98516104,98516167 -6 + chr12 98954384 98954419 chr12,98954384,98954500,+,MLT1A1,LTR,ERVL-MaLR,1,131,-277,98954384,98954777 +4 + chr12 99097016 99097116 chr12,99096986,99097116,+,L2c,LINE,L2,3261,3387,0,99093726,99097116 +2 + chr12 99099794 99099860 chr12,99099649,99099958,+,MER45B,DNA,hAT-Tip100,720,1036,-4,99098930,99099962 +3 + chr12 99104684 99105011 chr12,99104684,99105011,+,L2a,LINE,L2,3023,3421,-5,99101662,99105016 +5 + chr12 100026248 100026589 chr12,100026187,100026589,-,Tigger3b,DNA,TcMar-Tigger,-895,336,11,100025292,100026599 +5 - chr12 100026749 100027045 chr12,100026749,100027045,-,AluSp,SINE,Alu,-16,297,1,100026733,100027045 +6 - chr12 100027068 100027367 chr12,100027068,100027367,+,MLT1L,LTR,ERVL-MaLR,191,528,-82,100026878,100027449 -6 + chr12 100027435 100027540 chr12,100027435,100027836,+,L3,LINE,CR1,3614,4099,0,100023822,100027836 -1 + chr12 100032340 100032706 chr12,100032340,100032706,-,L2b,LINE,L2,-1,3374,3033,100032339,100035738 +6 - chr12 100033051 100033323 chr12,100033051,100033323,-,L2b,LINE,L2,-613,2806,2505,100032438,100035827 +6 - chr12 100033531 100033830 chr12,100033531,100033830,-,AluSz,SINE,Alu,-9,303,1,100033522,100033830 +6 - chr12 100033941 100034074 chr12,100033941,100034791,+,L1MA8,LINE,L1,5450,6286,-5,100028492,100034796 -1 + chr12 100143187 100143343 chr12,100143187,100143493,-,AluSg,SINE,Alu,0,310,1,100143187,100143493 -4 - chr12 100144540 100144671 chr12,100144301,100144696,+,MER57B1,LTR,ERV1,1,401,0,100144301,100144696 +5 + chr12 100852346 100852518 chr12,100852346,100852536,-,MLT1J,LTR,ERVL-MaLR,-74,438,243,100852272,100852778 +2 - chr12 100859080 100859262 chr12,100859080,100859507,+,MLT1I,LTR,ERVL-MaLR,1,411,0,100859080,100859507 -1 + chr12 101038596 101038778 chr12,101038596,101038778,-,MIRc,SINE,MIR,-61,207,17,101038535,101038794 +6 - chr12 101038795 101038907 chr12,101038795,101038925,+,FLAM_C,SINE,Alu,4,133,-10,101038792,101038935 -2 + chr12 101039026 101039094 chr12,101039011,101039145,+,MIR3,SINE,MIR,69,201,-7,101038943,101039152 -1 + chr12 101409033 101409060 chr12,101409033,101409177,-,L1MA9,LINE,L1,-30,6282,6138,101409003,101415314 +1 - chr12 101650816 101650948 chr12,101650686,101651152,-,Tigger9b,DNA,TcMar-Tigger,-125,499,2,101650561,101651153 +1 - chr12 101696005 101696174 chr12,101696005,101696174,-,L1ME3E,LINE,L1,-836,5310,5139,101695169,101701312 +6 - chr12 101696403 101696450 chr12,101696403,101696713,-,MER58B,DNA,hAT-Charlie,0,341,1,101696403,101696713 +1 - chr12 101923410 101923465 chr12,101923358,101923503,+,L2c,LINE,L2,3260,3387,0,101920099,101923503 -5 + chr12 101924533 101924719 chr12,101924533,101924964,-,MLT1K,LTR,ERVL-MaLR,-33,562,62,101924500,101925025 +1 - chr12 101955157 101955188 chr12,101955157,101955188,+,(GTTT)n,Simple_repeat,Simple_repeat,1,32,0,101955157,101955188 -6 + chr12 101961030 101961079 chr12,101960770,101961079,-,AluSz,SINE,Alu,-9,303,2,101960761,101961080 +4 - chr12 101962250 101962390 chr12,101962172,101962577,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,101962172,101962577 +1 - chr12 102063355 102063421 chr12,102062989,102063561,-,MER51A,LTR,ERV1,0,634,1,102062989,102063561 -1 - chr12 102809564 102809766 chr12,102809564,102809766,+,MER113,DNA,hAT-Charlie,385,521,0,102809180,102809766 -6 + chr12 102809834 102809974 chr12,102809834,102809974,-,L1PA3,LINE,L1,-2,6153,6014,102809832,102815987 +6 - chr12 102810488 102810570 chr12,102810488,102810570,-,MER103C,DNA,hAT-Charlie,-56,241,164,102810432,102810733 +6 - chr12 102810642 102810755 chr12,102810642,102810755,+,MIR,SINE,MIR,111,222,-40,102810532,102810795 -6 + chr12 102810793 102811101 chr12,102810793,102811101,+,AluSx1,SINE,Alu,1,307,-5,102810793,102811106 -6 + chr12 102811101 102811182 chr12,102811101,102811182,-,MER103C,DNA,hAT-Charlie,-134,163,74,102810967,102811255 +6 - chr12 102811546 102811624 chr12,102811546,102811624,+,L2a,LINE,L2,3347,3424,-2,102808200,102811626 -6 + chr12 102812463 102812616 chr12,102812463,102812731,+,LTR33,LTR,ERVL,5,270,-245,102812459,102812976 -2 + chr12 102813868 102813972 chr12,102813759,102814008,+,MIRb,SINE,MIR,7,258,-10,102813753,102814018 -3 + chr12 103080950 103080996 chr12,103080755,103080996,-,MIR,SINE,MIR,-2,260,6,103080753,103081001 +5 - chr12 103081240 103081537 chr12,103081240,103081751,-,HAL1,LINE,L1,-519,1988,1472,103080721,103083222 +2 - chr12 103151842 103151918 chr12,103151758,103152353,+,MLT1E3,LTR,ERVL-MaLR,1,620,-4,103151758,103152357 +1 + chr12 103159459 103159475 chr12,103159364,103159475,-,L2b,LINE,L2,-15,3360,3252,103159349,103162726 -2 - chr12 103161443 103161546 chr12,103161329,103161546,-,MER103C,DNA,hAT-Charlie,-1,296,75,103161328,103161620 -2 - chr12 103548668 103548708 chr12,103548628,103548708,+,Charlie7,DNA,hAT-Charlie,2425,2507,-105,103546204,103548813 +2 + chr12 103550462 103550492 chr12,103550085,103550492,-,L1ME4a,LINE,L1,-41,6083,5686,103550044,103556177 -2 - chr12 103550498 103550661 chr12,103550498,103550871,-,L1ME4a,LINE,L1,-494,5630,5255,103550004,103556125 -5 - chr12 103557645 103557812 chr12,103557645,103557812,+,LTR16C,LTR,ERVL,291,487,-2,103557355,103557814 +6 + chr12 103558007 103558674 chr12,103558007,103558674,+,L2b,LINE,L2,2572,3285,-141,103555436,103558815 +6 + chr12 103558661 103558949 chr12,103558661,103558949,-,L2c,LINE,L2,0,3426,3114,103558661,103562062 -6 - chr12 103558949 103559543 chr12,103558949,103559543,+,MER77,LTR,ERVL,1,604,0,103558949,103559543 +6 + chr12 103559543 103559682 chr12,103559543,103559682,-,L2c,LINE,L2,-262,3113,2944,103559281,103562625 -6 - chr12 103559723 103559806 chr12,103559723,103559806,+,L2b,LINE,L2,3344,3426,0,103556380,103559806 +6 + chr12 103657607 103657626 chr12,103657485,103657626,+,MER63A,DNA,hAT-Blackjack,1,144,-66,103657485,103657692 -4 + chr12 103746418 103746513 chr12,103746418,103746513,-,L3,LINE,CR1,-2,4097,3989,103746416,103750501 +6 - chr12 103763312 103763367 chr12,103763108,103763367,+,L1ME3,LINE,L1,5893,6154,-8,103757216,103763375 -5 + chr12 103763750 103763818 chr12,103763750,103763953,-,LTR82B,LTR,ERVL,-2,828,622,103763748,103764574 +2 - chr12 103766875 103766913 chr12,103766875,103767574,+,L1MB7,LINE,L1,5430,6169,-15,103761446,103767589 -1 + chr12 103768825 103768858 chr12,103768825,103768976,-,MLT1L,LTR,ERVL-MaLR,-35,575,426,103768790,103769401 +1 - chr12 104177517 104177640 chr12,104177365,104177640,+,L2a,LINE,L2,3151,3425,-1,104174215,104177641 +2 + chr12 104280306 104280513 chr12,104280306,104280513,+,L2-3_Crp,LINE,L2,875,1087,-1009,104279432,104281522 -6 + chr12 104280524 104280722 chr12,104280524,104280952,+,MLT2D,LTR,ERVL,2,414,0,104280523,104280952 -1 + chr12 104552073 104552175 chr12,104552025,104552175,-,MER5A1,DNA,hAT-Charlie,-1,165,13,104552024,104552187 -1 - chr12 104552294 104552603 chr12,104552294,104552603,-,AluJb,SINE,Alu,0,312,3,104552294,104552605 -6 - chr12 104552604 104552913 chr12,104552604,104552913,+,L2a,LINE,L2,3072,3416,-10,104549533,104552923 +6 + chr12 104553062 104553211 chr12,104553062,104553211,+,MIR,SINE,MIR,106,261,-1,104552957,104553212 +6 + chr12 104553211 104553264 chr12,104553211,104553264,+,(GAT)n,Simple_repeat,Simple_repeat,1,54,0,104553211,104553264 +6 + chr12 104553289 104553350 chr12,104553289,104553350,-,L2c,LINE,L2,-219,3156,3096,104553070,104556445 -6 - chr12 104553362 104553385 chr12,104553362,104553385,-,MLT1F2,LTR,ERVL-MaLR,0,560,544,104553362,104553928 -6 - chr12 104553385 104553447 chr12,104553385,104553568,-,MSTA,LTR,ERVL-MaLR,-2,426,226,104553383,104553793 -5 - chr12 105073765 105073805 chr12,105073519,105073805,+,MLT1J,LTR,ERVL-MaLR,1,317,-195,105073519,105074000 +2 + chr12 105102477 105102720 chr12,105102477,105103065,+,L1MEg,LINE,L1,90,695,-5389,105102388,105108454 -2 + chr12 105106788 105107109 chr12,105106685,105107109,-,L1ME3G,LINE,L1,-10,914,429,105106675,105107537 +4 - chr12 105304867 105305149 chr12,105303344,105308170,-,HERVK9-int,LTR,ERVK,0,6021,1125,105303344,105309294 +5 - chr12 105308629 105308738 chr12,105308171,105308738,-,HERVK9-int,LTR,ERVK,-5441,580,1,105302730,105308738 +4 - chr12 105308738 105308780 chr12,105308738,105309240,-,MER9a1,LTR,ERVK,0,513,1,105308738,105309240 +2 - chr12 105737300 105737397 chr12,105737300,105737512,+,LTR90A,LTR,LTR,1,248,-728,105737300,105738240 +4 + chr12 105741756 105741893 chr12,105741739,105741893,-,L2a,LINE,L2,-1,3425,3269,105741738,105745161 -2 - chr12 105742802 105742922 chr12,105742802,105742922,+,MLT1N2,LTR,ERVL-MaLR,431,551,-11,105742372,105742933 +6 + chr12 105743808 105743961 chr12,105743808,105743961,-,LTR33C,LTR,ERVL,-469,160,19,105743339,105743979 -6 - chr12 105743982 105744062 chr12,105743982,105744334,-,ERVL-E-int,LTR,ERVL,-3,5664,5301,105743979,105749634 -5 - chr12 106050961 106051121 chr12,106050615,106051121,-,MER21A,LTR,ERVL,-6,925,416,106050609,106051536 +5 - chr12 106051277 106051378 chr12,106051125,106051378,-,MLT1K,LTR,ERVL-MaLR,-18,577,326,106051107,106051703 +4 - chr12 106104091 106104228 chr12,106104064,106104365,-,AluSz,SINE,Alu,-11,301,1,106104053,106104365 -3 - chr12 106245613 106245682 chr12,106245588,106245894,-,AluSx,SINE,Alu,-6,306,1,106245582,106245894 +5 - chr12 106246715 106246759 chr12,106246460,106246759,+,AluSz,SINE,Alu,1,297,-15,106246460,106246774 -4 + chr12 106250759 106250885 chr12,106250614,106250885,+,AluJr4,SINE,Alu,1,297,-15,106250614,106250900 +1 + chr12 106251023 106251165 chr12,106251023,106251165,+,MIRb,SINE,MIR,1,171,-97,106251023,106251262 +6 + chr12 106251165 106251423 chr12,106251165,106251423,+,AluJb,SINE,Alu,1,256,-56,106251165,106251479 +6 + chr12 106251423 106251511 chr12,106251423,106251511,+,MIR,SINE,MIR,166,254,-8,106251258,106251519 +6 + chr12 106252398 106252656 chr12,106252398,106252656,+,AluSx,SINE,Alu,1,257,-55,106252398,106252711 +6 + chr12 106252665 106252736 chr12,106252665,106252736,+,(ATG)n,Simple_repeat,Simple_repeat,1,72,0,106252665,106252736 +6 + chr12 106496471 106496546 chr12,106496471,106496634,+,MIR,SINE,MIR,58,224,-38,106496414,106496672 -2 + chr12 106500076 106500158 chr12,106500019,106500158,+,MIRb,SINE,MIR,46,193,-75,106499974,106500233 -4 + chr12 106680761 106681004 chr12,106680761,106681004,-,MIR,SINE,MIR,0,262,13,106680761,106681016 +6 - chr12 106954673 106954800 chr12,106954673,106954800,-,MIRc,SINE,MIR,-9,259,108,106954664,106954907 +6 - chr12 106955105 106955229 chr12,106955105,106955229,-,L2a,LINE,L2,-9,3417,3271,106955096,106958499 +6 - chr12 107097438 107097470 chr12,107096026,107097597,+,THE1C-int,LTR,ERVL-MaLR,3,1631,0,107096024,107097597 +3 + chr12 107121973 107122023 chr12,107121809,107122254,+,MER31A,LTR,ERV1,1,485,0,107121809,107122254 +3 + chr12 107122991 107123002 chr12,107122946,107123002,+,L2b,LINE,L2,3075,3130,-296,107119872,107123298 +2 + chr12 107123184 107123314 chr12,107123184,107123595,-,L1ME3D,LINE,L1,-9,6233,5785,107123175,107129379 -5 - chr12 107736555 107736947 chr12,107736110,107737101,-,L2a,LINE,L2,-5,3421,2276,107736105,107739376 -1 - chr12 107738022 107738139 chr12,107738015,107738139,-,MLT1B,LTR,ERVL-MaLR,-55,335,213,107737960,107738351 -2 - chr12 107738140 107738202 chr12,107738140,107738202,+,MLT1A,LTR,ERVL-MaLR,312,379,-11,107737829,107738213 +6 + chr12 107758275 107758392 chr12,107758238,107758465,-,AluJr,SINE,Alu,-1,311,85,107758237,107758549 -3 - chr12 107835711 107836445 chr12,107835711,107836445,+,L1M3,LINE,L1,4213,4956,-1184,107831499,107837629 -6 + chr12 107839291 107839365 chr12,107839102,107839365,-,MIR,SINE,MIR,-18,244,21,107839084,107839385 +5 - chr12 107860421 107860501 chr12,107860421,107860629,+,L1M4,LINE,L1,2017,2222,-5295,107858405,107865924 -2 + chr12 107863726 107863967 chr12,107861612,107864193,+,L1PA7,LINE,L1,1960,4540,-1779,107859653,107865972 -1 + chr12 107864442 107864562 chr12,107864193,107865394,+,LTR12D,LTR,ERV1,1,1254,0,107864193,107865394 -1 + chr12 108434130 108434293 chr12,108433991,108434388,+,MLT1L,LTR,ERVL-MaLR,123,465,-145,108433869,108434533 -5 + chr12 108438800 108438899 chr12,108438684,108439165,-,MLT2B1,LTR,ERVL,0,520,1,108438684,108439165 +3 - chr12 108442549 108442699 chr12,108442421,108442760,+,L1ME3G,LINE,L1,152,513,-411,108442270,108443171 -3 + chr12 108443275 108443317 chr12,108442920,108443387,+,LTR10F,LTR,ERV1,1,511,0,108442920,108443387 -3 + chr12 108447442 108447509 chr12,108447365,108447509,-,MLT1F,LTR,ERVL-MaLR,-1,568,425,108447364,108447933 +4 - chr12 108448386 108448496 chr12,108448330,108448522,-,MLT1F,LTR,ERVL-MaLR,-183,365,167,108448147,108448688 +3 - chr12 108448808 108448886 chr12,108448808,108449321,-,MER41C,LTR,ERV1,0,521,1,108448808,108449321 +2 - chr12 108457796 108457879 chr12,108457706,108457879,-,LTR104_Mam,LTR,Gypsy,-67,1442,1247,108457639,108459125 +4 - chr12 108459191 108459303 chr12,108459191,108459639,-,LTR104_Mam,LTR,Gypsy,-1001,508,44,108458190,108459682 +5 - chr12 108459425 108459584 chr12,108459191,108459639,-,LTR104_Mam,LTR,Gypsy,-1001,508,44,108458190,108459682 +5 - chr12 108461630 108461648 chr12,108461593,108461648,-,L2c,LINE,L2,-1,3386,3333,108461592,108464980 +4 - chr12 108464262 108464446 chr12,108464200,108464492,+,L2b,LINE,L2,3003,3360,-15,108461198,108464507 -3 + chr12 108473551 108473573 chr12,108473332,108473573,+,L2b,LINE,L2,2577,2799,-620,108470756,108474193 -4 + chr12 108473574 108473689 chr12,108473574,108473912,-,MLT1I,LTR,ERVL-MaLR,0,411,39,108473574,108473950 +1 - chr12 108479539 108479628 chr12,108479452,108479628,+,L3b,LINE,CR1,4984,5164,-68,108474469,108479696 -4 + chr12 108479668 108479829 chr12,108479668,108479829,-,MER5A1,DNA,hAT-Charlie,0,166,2,108479668,108479830 +6 - chr12 108479962 108480096 chr12,108479962,108480096,+,MIR3,SINE,MIR,85,207,-1,108479878,108480097 -6 + chr12 108480164 108480528 chr12,108480164,108480714,+,MLT1K,LTR,ERVL-MaLR,5,595,0,108480160,108480714 -2 + chr12 108486173 108486242 chr12,108486082,108486547,+,LTR16A2,LTR,ERVL,4,494,-1,108486079,108486548 -3 + chr12 108492450 108492585 chr12,108492357,108492605,+,MLT1O,LTR,ERVL-MaLR,81,331,-211,108492277,108492816 -1 + chr12 108635849 108635962 chr12,108635755,108635962,-,MIRb,SINE,MIR,-11,257,12,108635744,108635973 -1 - chr12 108640874 108640907 chr12,108640685,108640907,+,MLT2B4,LTR,ERVL,230,406,-8,108640456,108640915 +2 + chr12 108640920 108641061 chr12,108640920,108641061,-,L2a,LINE,L2,-703,2716,2554,108640217,108643614 -6 - chr12 108778912 108779100 chr12,108778804,108779100,-,AluJb,SINE,Alu,-10,302,5,108778794,108779104 -1 - chr12 108833721 108833860 chr12,108833701,108833860,+,MER3,DNA,hAT-Charlie,53,205,-4,108833649,108833864 -5 + chr12 108834374 108834384 chr12,108834374,108834460,-,MIR3,SINE,MIR,-37,171,83,108834337,108834542 +1 - chr12 109052621 109052654 chr12,109052621,109052654,+,(CGG)n,Simple_repeat,Simple_repeat,1,33,0,109052621,109052654 -6 + chr12 109053889 109053952 chr12,109053889,109054092,+,MIR,SINE,MIR,14,255,-7,109053876,109054099 -1 + chr12 109113095 109113146 chr12,109112836,109113146,-,MER58B,DNA,hAT-Charlie,0,341,1,109112836,109113146 -2 - chr12 109125261 109125451 chr12,109125013,109125451,-,L1MC5a,LINE,L1,-913,1864,1392,109124100,109126842 -2 - chr12 109125460 109125580 chr12,109125460,109125580,-,L2b,LINE,L2,-609,2810,2688,109124851,109128267 -6 - chr12 109354321 109354435 chr12,109354321,109354648,+,AluSc8,SINE,Alu,2,310,-1,109354320,109354649 -2 + chr12 109734166 109734226 chr12,109733935,109734226,+,AluJr,SINE,Alu,6,301,-11,109733930,109734237 -5 + chr12 109734226 109734396 chr12,109734226,109734396,-,L2c,LINE,L2,-555,2864,2690,109733671,109737085 +5 - chr12 109887793 109888073 chr12,109887771,109888073,-,AluJr,SINE,Alu,-10,302,1,109887761,109888073 -2 - chr12 109997487 109997585 chr12,109997487,109997585,+,MER58C,DNA,hAT-Charlie,34,129,-86,109997454,109997671 -6 + chr12 109997948 109998084 chr12,109997948,109998084,-,L2a,LINE,L2,-5,3421,3280,109997943,110001363 +6 - chr12 109998300 109998551 chr12,109998300,109998551,+,MamRTE1,LINE,RTE-BovB,3352,3596,-216,109994949,109998767 -6 + chr12 109998562 109998646 chr12,109998562,109998646,+,MamRTE1,LINE,RTE-BovB,3667,3750,-62,109994896,109998708 -6 + chr12 109998743 109998937 chr12,109998743,109998937,+,MER20,DNA,hAT-Charlie,2,219,0,109998742,109998937 -6 + chr12 110032245 110032357 chr12,110031746,110032357,-,L1M4,LINE,L1,-1737,4409,3854,110030009,110036210 -1 - chr12 110032391 110032803 chr12,110032391,110033043,+,L1ME3D,LINE,L1,5408,6101,-141,110026984,110033184 +5 + chr12 110056916 110056980 chr12,110056661,110056980,+,THE1B,LTR,ERVL-MaLR,1,364,0,110056661,110056980 -5 + chr12 110502041 110502091 chr12,110502041,110502091,+,(CCGTCA)n,Simple_repeat,Simple_repeat,1,52,0,110502041,110502091 +6 + chr12 110502728 110502907 chr12,110502728,110502907,+,MIR,SINE,MIR,52,219,-43,110502677,110502950 +6 + chr12 110502962 110503269 chr12,110502962,110503269,+,AluSx1,SINE,Alu,1,306,-6,110502962,110503275 +6 + chr12 110744549 110744616 chr12,110744430,110744616,-,L2a,LINE,L2,0,3426,3220,110744430,110747835 -1 - chr12 110744632 110744852 chr12,110744632,110744852,-,MIR,SINE,MIR,-44,224,12,110744588,110744863 -6 - chr12 110745333 110745424 chr12,110745333,110745424,+,MIR3,SINE,MIR,100,185,-23,110745234,110745447 +6 + chr12 110745548 110745845 chr12,110745548,110745845,-,MER102b,DNA,hAT-Charlie,-17,324,1,110745531,110745845 -6 - chr12 110745937 110746206 chr12,110745937,110746234,+,AluSx1,SINE,Alu,1,310,-2,110745937,110746236 +5 + chr12 110831779 110831882 chr12,110831574,110831882,-,AluSz6,SINE,Alu,0,312,1,110831574,110831882 -1 - chr12 110831943 110831994 chr12,110831943,110832267,+,MER77,LTR,ERVL,276,591,-13,110831668,110832280 +4 + chr12 110845599 110845641 chr12,110845510,110845641,+,MER46C,DNA,TcMar-Tigger,77,220,-118,110845434,110845759 +2 + chr12 110845760 110845963 chr12,110845760,110846101,-,AluSz,SINE,Alu,-13,299,1,110845747,110846101 -5 - chr12 110936585 110936698 chr12,110936431,110936780,+,THE1D,LTR,ERVL-MaLR,1,381,0,110936431,110936780 +1 + chr12 110938290 110938377 chr12,110938069,110938377,-,AluJr,SINE,Alu,-2,310,1,110938067,110938377 -2 - chr12 110938377 110938512 chr12,110938377,110938533,-,L2a,LINE,L2,-245,3181,3012,110938132,110941544 -4 - chr12 110943678 110943695 chr12,110943678,110943701,+,(A)n,Simple_repeat,Simple_repeat,1,23,0,110943678,110943701 +5 + chr12 110951683 110951842 chr12,110949972,110951917,-,SVA_D,Retroposon,SVA,-10,1376,1,110949962,110951917 +5 - chr12 110956239 110956340 chr12,110956056,110956358,+,AluJb,SINE,Alu,1,297,-15,110956056,110956373 -3 + chr12 110956474 110956576 chr12,110956387,110956576,-,MIRb,SINE,MIR,-34,234,23,110956353,110956598 -2 - chr12 110957392 110957476 chr12,110957272,110957476,+,MIR,SINE,MIR,35,262,0,110957238,110957476 -4 + chr12 110958022 110958120 chr12,110957810,110958120,+,MLT1K,LTR,ERVL-MaLR,42,439,-156,110957769,110958276 +1 + chr12 111371969 111372070 chr12,111371614,111372729,-,THE1A-int,LTR,ERVL-MaLR,0,1580,447,111371614,111373175 -3 - chr12 111396835 111396873 chr12,111396813,111396901,-,MIRc,SINE,MIR,-115,153,65,111396698,111396965 -1 - chr12 111812793 111812899 chr12,111812594,111812899,+,AluJb,SINE,Alu,1,311,-1,111812594,111812900 +1 + chr12 111839764 111840110 chr12,111839719,111840110,-,MLT1J1,LTR,ERVL-MaLR,-2,442,8,111839717,111840117 +5 - chr12 111840111 111840363 chr12,111840111,111840363,+,L2b,LINE,L2,2382,2654,-765,111837730,111841128 -6 + chr12 111840363 111840477 chr12,111840363,111840645,+,AluJb,SINE,Alu,2,292,-20,111840362,111840665 -2 + chr12 111841327 111841497 chr12,111841073,111841497,+,L2b,LINE,L2,2935,3370,-5,111838139,111841502 -4 + chr12 111841557 111841731 chr12,111841557,111841731,+,MIRb,SINE,MIR,35,204,-64,111841523,111841795 -1 + chr12 111842306 111842339 chr12,111842306,111842339,+,(GGCGGA)n,Simple_repeat,Simple_repeat,1,33,0,111842306,111842339 -6 + chr12 111842514 111842580 chr12,111842514,111842580,+,(GCC)n,Simple_repeat,Simple_repeat,1,67,0,111842514,111842580 -6 + chr12 112018804 112019166 chr12,112018599,112019166,+,L1MB5,LINE,L1,5580,6167,-7,112013020,112019173 -5 + chr12 112063909 112064040 chr12,112063908,112064040,-,FLAM_A,SINE,Alu,-10,132,1,112063898,112064040 -1 - chr12 112064040 112064073 chr12,112064040,112064073,+,HAL1,LINE,L1,2488,2507,0,112061553,112064073 +6 + chr12 112064220 112064270 chr12,112064220,112064527,-,AluSz,SINE,Alu,-7,305,1,112064213,112064527 -4 - chr12 112065522 112065688 chr12,112065513,112065688,+,AluSx1,SINE,Alu,137,308,-4,112065377,112065692 +2 + chr12 112907628 112907678 chr12,112907610,112907678,+,MIR,SINE,MIR,71,138,-124,112907540,112907802 -5 + chr12 112907688 112907757 chr12,112907688,112908078,-,MER61F,LTR,ERV1,0,676,275,112907688,112908352 +2 - chr12 112932743 112932867 chr12,112932639,112932867,-,MIRb,SINE,MIR,0,268,3,112932639,112932869 -1 - chr12 112932916 112933001 chr12,112932916,112933001,+,MIRc,SINE,MIR,80,161,-101,112932837,112933102 +6 + chr12 113017399 113017528 chr12,113017315,113017528,-,THE1C,LTR,ERVL-MaLR,0,375,162,113017315,113017689 +4 - chr12 113017528 113017751 chr12,113017528,113017830,+,AluSc,SINE,Alu,1,306,-3,113017528,113017833 -1 + chr12 113185722 113185778 chr12,113185722,113185778,+,(TGCTGGT)n,Simple_repeat,Simple_repeat,1,56,0,113185722,113185778 -6 + chr12 113249466 113249580 chr12,113249381,113249580,+,MIR3,SINE,MIR,2,205,-3,113249380,113249583 +1 + chr12 113249848 113250042 chr12,113249848,113250072,+,MIR,SINE,MIR,50,262,0,113249799,113250072 +5 + chr12 113679479 113679740 chr12,113679479,113679755,+,AluJo,SINE,Alu,1,296,-16,113679479,113679771 -2 + chr12 113706951 113706976 chr12,113706951,113707578,-,L1ME2z,LINE,L1,-5,6439,5821,113706946,113713398 +2 - chr12 113737468 113737644 chr12,113737468,113737644,-,MIR,SINE,MIR,-14,248,81,113737454,113737724 +6 - chr12 113744627 113744979 chr12,113744627,113744979,-,MSTD,LTR,ERVL-MaLR,-1,395,1,113744626,113744979 +6 - chr12 113745278 113745460 chr12,113745278,113745460,-,MLT1C,LTR,ERVL-MaLR,0,467,298,113745278,113745757 +6 - chr12 113745493 113745811 chr12,113745493,113745811,-,MLT1K,LTR,ERVL-MaLR,-43,552,201,113745450,113746011 +5 - chr12 113746155 113746318 chr12,113746155,113746318,-,MIR1_Amn,SINE,MIR,-33,175,10,113746122,113746327 +6 - chr12 113746378 113746457 chr12,113746378,113746457,-,L2c,LINE,L2,-231,3156,3079,113746147,113749535 +6 - chr12 113746460 113746473 chr12,113746460,113746473,+,(CCAT)n,Simple_repeat,Simple_repeat,1,31,-64,113746460,113746537 -6 + chr12 113746473 113746535 chr12,113746473,113746535,+,(TCCT)n,Simple_repeat,Simple_repeat,1,63,0,113746473,113746535 -6 + chr12 113746535 113746559 chr12,113746535,113746559,+,(CCAT)n,Simple_repeat,Simple_repeat,32,95,0,113746504,113746559 -6 + chr12 113751014 113751300 chr12,113751013,113751300,-,AluSx3,SINE,Alu,-14,297,2,113750999,113751301 +5 - chr12 113751305 113751422 chr12,113751305,113751422,-,MIRb,SINE,MIR,-50,218,94,113751255,113751515 +6 - chr12 113751427 113751569 chr12,113751427,113751569,-,MER5A,DNA,hAT-Charlie,-6,183,55,113751421,113751623 +6 - chr12 113751601 113752080 chr12,113751601,113752080,-,MLT1H1,LTR,ERVL-MaLR,0,555,14,113751601,113752093 +6 - chr12 113767075 113767142 chr12,113767075,113767142,+,MER5B,DNA,hAT-Charlie,1,71,-107,113767075,113767249 -4 + chr12 113773615 113773683 chr12,113773363,113773916,-,MLT1K,LTR,ERVL-MaLR,0,595,92,113773363,113774007 +1 - chr12 114113341 114113391 chr12,114113032,114113391,+,THE1B,LTR,ERVL-MaLR,1,364,0,114113032,114113391 +2 + chr12 114239302 114239400 chr12,114239302,114239753,+,LTR33,LTR,ERVL,14,502,-13,114239289,114239766 -2 + chr12 114241728 114241770 chr12,114241599,114241788,+,MIRb,SINE,MIR,20,240,-28,114241580,114241816 -1 + chr12 114408448 114408472 chr12,114408448,114408472,+,(TTA)n,Simple_repeat,Simple_repeat,1,24,0,114408448,114408472 +6 + chr12 114408691 114408735 chr12,114408691,114408735,+,(GGAGTG)n,Simple_repeat,Simple_repeat,1,44,0,114408691,114408735 +6 + chr12 114410585 114410611 chr12,114410585,114410611,+,(TTG)n,Simple_repeat,Simple_repeat,1,48,-15,114410585,114410626 +6 + chr12 114410611 114410640 chr12,114410611,114410640,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,114410611,114410640 +6 + chr12 114411196 114411222 chr12,114411196,114411222,+,(GAAA)n,Simple_repeat,Simple_repeat,1,26,0,114411196,114411222 +6 + chr12 114621761 114621889 chr12,114621329,114621889,+,MLT1G1,LTR,ERVL-MaLR,4,579,0,114621326,114621889 +1 + chr12 114621889 114622011 chr12,114621889,114622072,-,MIRb,SINE,MIR,-31,237,26,114621858,114622097 -4 - chr12 114713921 114713999 chr12,114713921,114714054,+,MLT1H,LTR,ERVL-MaLR,428,560,0,114713494,114714054 +4 + chr12 114725277 114725533 chr12,114725216,114725555,-,AluJb,SINE,Alu,0,312,1,114725216,114725555 -3 - chr12 114725652 114725738 chr12,114725631,114725738,-,MIR,SINE,MIR,-110,152,47,114725521,114725784 -2 - chr12 114748096 114748210 chr12,114748058,114748357,-,AluSx,SINE,Alu,0,312,11,114748058,114748367 -3 - chr12 114771537 114771649 chr12,114771516,114771649,-,FLAM_C,SINE,Alu,-8,135,4,114771508,114771652 -2 - chr12 114771649 114771708 chr12,114771649,114771708,+,(TCCTTC)n,Simple_repeat,Simple_repeat,1,59,0,114771649,114771708 +6 + chr12 114771760 114771851 chr12,114771760,114772076,-,AluSx,SINE,Alu,0,312,1,114771760,114772076 -5 - chr12 115077325 115077377 chr12,115077000,115077602,+,MLT1G3,LTR,ERVL-MaLR,4,595,0,115076997,115077602 +1 + chr12 115078706 115078917 chr12,115078706,115078917,+,MIR,SINE,MIR,40,262,0,115078667,115078917 +6 + chr12 115078917 115078960 chr12,115078917,115078960,+,(GTT)n,Simple_repeat,Simple_repeat,1,43,0,115078917,115078960 +6 + chr12 115079460 115079659 chr12,115079460,115079659,+,MIR,SINE,MIR,4,215,-47,115079457,115079706 +6 + chr12 115079671 115079891 chr12,115079671,115079891,-,MER58A,DNA,hAT-Charlie,0,224,1,115079671,115079891 -6 - chr12 115079894 115079984 chr12,115079894,115079984,+,MIR,SINE,MIR,5,92,-170,115079890,115080154 +6 + chr12 115080129 115080153 chr12,115080129,115080426,+,AluY,SINE,Alu,1,297,-14,115080129,115080440 +5 + chr12 115270196 115270546 chr12,115270189,115270546,+,L1M3,LINE,L1,5104,5476,-692,115265086,115271238 +2 + chr12 115270546 115270572 chr12,115270546,115270572,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,26,0,115270546,115270572 +6 + chr12 115270572 115270596 chr12,115270572,115270765,+,L1M3,LINE,L1,5477,5681,-663,115265096,115271428 +5 + chr12 115299857 115300169 chr12,115299857,115300169,+,AluSx,SINE,Alu,1,312,0,115299857,115300169 -6 + chr12 115300408 115300468 chr12,115300408,115300468,-,L2c,LINE,L2,-3,3384,3324,115300405,115303791 +6 - chr12 115300679 115300708 chr12,115300679,115300818,-,MER5A1,DNA,hAT-Charlie,-6,160,21,115300673,115300838 +1 - chr12 115318760 115319372 chr12,115318760,115319372,+,L1PA7,LINE,L1,5522,6135,-19,115313239,115319391 -6 + chr12 115319864 115320044 chr12,115319864,115320044,+,MER5A,DNA,hAT-Charlie,1,189,0,115319864,115320044 -6 + chr12 115320052 115320222 chr12,115320052,115320222,+,MER5A1,DNA,hAT-Charlie,1,166,0,115320052,115320222 -6 + chr12 115320230 115320274 chr12,115320230,115320274,+,MER5B,DNA,hAT-Charlie,1,44,-134,115320230,115320408 -6 + chr12 115320290 115320369 chr12,115320290,115320369,-,MER5B,DNA,hAT-Charlie,-98,80,3,115320192,115320371 +6 - chr12 115320388 115320405 chr12,115320388,115320473,-,L2c,LINE,L2,-234,3153,3071,115320154,115323543 +1 - chr12 115332146 115332181 chr12,115332128,115332181,+,L1MB3,LINE,L1,6169,6221,-113,115325960,115332294 -5 + chr12 115332541 115332566 chr12,115332541,115332640,+,Charlie26a,DNA,hAT-Charlie,65,163,-162,115332477,115332802 -1 + chr12 115569673 115569758 chr12,115569673,115569787,-,MIR3,SINE,MIR,-19,189,76,115569654,115569862 -4 - chr12 115576832 115577017 chr12,115576832,115577044,-,MIR,SINE,MIR,-1,261,38,115576831,115577081 -4 - chr12 115577418 115577459 chr12,115577381,115577459,-,MIR3,SINE,MIR,-41,167,78,115577340,115577536 -2 - chr12 115580285 115580359 chr12,115579726,115580395,+,L2a,LINE,L2,2726,3426,0,115577001,115580395 +3 + chr12 115581129 115581169 chr12,115581129,115581259,-,MIRb,SINE,MIR,-23,245,90,115581106,115581348 -4 - chr12 115582765 115582965 chr12,115582684,115582989,+,AluJb,SINE,Alu,1,303,-9,115582684,115582998 -5 + chr12 115597341 115597413 chr12,115597201,115597413,-,MLT1H,LTR,ERVL-MaLR,-7,542,308,115597194,115597720 +4 - chr12 115601655 115601827 chr12,115601473,115601827,+,L2a,LINE,L2,3039,3420,-6,115598435,115601833 -1 + chr12 115601830 115601845 chr12,115601830,115601964,+,MIR,SINE,MIR,118,259,-3,115601713,115601967 -2 + chr12 115620085 115620162 chr12,115619981,115620180,-,MLT1J2,LTR,ERVL-MaLR,-190,258,36,115619791,115620215 +3 - chr12 115765454 115765559 chr12,115765248,115765559,-,AluSc,SINE,Alu,0,309,8,115765248,115765566 -2 - chr12 115799788 115799936 chr12,115799666,115799968,+,MLT1B,LTR,ERVL-MaLR,184,467,0,115799483,115799968 +5 + chr12 115810359 115810467 chr12,115810314,115810687,-,MER121,DNA,hAT?,-27,374,3,115810287,115810689 +5 - chr12 115832406 115832430 chr12,115832066,115832430,-,L1MC2,LINE,L1,-244,6100,5734,115831822,115838163 +4 - chr12 115832454 115832638 chr12,115832454,115832831,-,MLT1A,LTR,ERVL-MaLR,0,374,1,115832454,115832831 +2 - chr12 115961560 115961585 chr12,115961560,115961686,+,MER33,DNA,hAT-Charlie,2,123,-201,115961559,115961887 +4 + chr12 116174781 116174872 chr12,116174781,116175079,+,AluJo,SINE,Alu,2,300,-12,116174780,116175091 -2 + chr12 116181174 116181218 chr12,116180919,116181218,-,AluSg,SINE,Alu,-1,309,2,116180918,116181219 +4 - chr12 116368764 116368837 chr12,116368750,116368997,-,L2a,LINE,L2,-86,3340,3079,116368664,116372075 -1 - chr12 116384343 116384453 chr12,116384306,116384453,-,MIRb,SINE,MIR,-93,175,27,116384213,116384479 -2 - chr12 116518597 116518663 chr12,116518597,116518663,+,MamTip2,DNA,hAT-Tip100,85,150,-155,116518513,116518818 +6 + chr12 116534058 116534088 chr12,116534058,116534088,+,(CTC)n,Simple_repeat,Simple_repeat,1,31,0,116534058,116534088 +6 + chr12 116534395 116534433 chr12,116534395,116534433,+,(CCCCT)n,Simple_repeat,Simple_repeat,1,40,0,116534395,116534433 +6 + chr12 116534953 116535082 chr12,116534953,116535082,+,MIRb,SINE,MIR,31,184,-84,116534923,116535166 +6 + chr12 116535339 116535364 chr12,116535339,116535364,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,116535339,116535364 +6 + chr12 116535373 116535521 chr12,116535373,116535523,+,MIRc,SINE,MIR,57,206,-56,116535317,116535579 +5 + chr12 116536064 116536211 chr12,116536058,116536240,+,L2b,LINE,L2,3226,3426,0,116532833,116536240 +1 + chr12 116536497 116536518 chr12,116536497,116536639,+,L2b,LINE,L2,3204,3348,-27,116533294,116536666 +5 + chr12 116550571 116550774 chr12,116550571,116550782,+,MIRc,SINE,MIR,27,244,-24,116550545,116550806 +4 + chr12 116551115 116551172 chr12,116551089,116551212,+,L2b,LINE,L2,3231,3375,0,116547859,116551212 +3 + chr12 116554295 116554381 chr12,116554289,116554423,+,FLAM_C,SINE,Alu,2,133,-10,116554288,116554433 +5 + chr12 116562413 116562505 chr12,116562413,116562505,-,MIRb,SINE,MIR,-99,169,63,116562314,116562567 -6 - chr12 116562548 116562622 chr12,116562548,116562622,+,MIR3,SINE,MIR,78,153,-55,116562471,116562677 +6 + chr12 116562634 116562735 chr12,116562634,116562735,-,L1ME3Cz,LINE,L1,-19,978,878,116562615,116563612 -6 - chr12 116562827 116562928 chr12,116562827,116562956,-,L1MEc,LINE,L1,-4483,1917,1793,116558344,116564748 -5 - chr12 116580974 116581292 chr12,116580955,116581292,+,MSTB,LTR,ERVL-MaLR,1,367,-59,116580955,116581351 +1 + chr12 116581292 116581387 chr12,116581292,116581387,+,Alu,SINE,Alu,217,311,-1,116581076,116581388 +6 + chr12 116581398 116581425 chr12,116581398,116581425,+,MSTB,LTR,ERVL-MaLR,328,354,-27,116581071,116581452 +6 + chr12 116581461 116581729 chr12,116581461,116581729,-,AluJb,SINE,Alu,-45,267,1,116581416,116581729 -6 - chr12 116581729 116581850 chr12,116581729,116581850,-,MLT1C,LTR,ERVL-MaLR,-228,239,120,116581501,116581969 -6 - chr12 116581888 116582082 chr12,116581888,116582082,+,L2a,LINE,L2,3235,3423,-3,116578654,116582085 +6 + chr12 116582164 116582465 chr12,116582164,116582465,-,AluSz6,SINE,Alu,-10,302,1,116582154,116582465 -6 - chr12 116582528 116582606 chr12,116582528,116582606,-,MIRc,SINE,MIR,-152,116,38,116582376,116582643 -6 - chr12 116582624 116582774 chr12,116582624,116582774,-,AluJr4,SINE,Alu,-162,150,1,116582462,116582774 -6 - chr12 116583103 116583302 chr12,116583103,116583302,+,MER123,DNA?,DNA?,51,249,-18,116583053,116583320 +6 + chr12 116599587 116599615 chr12,116599587,116599615,+,(GGCC)n,Simple_repeat,Simple_repeat,1,28,0,116599587,116599615 +6 + chr12 116603498 116603572 chr12,116603426,116603572,-,MIRb,SINE,MIR,-54,214,48,116603372,116603619 -2 - chr12 116661582 116661920 chr12,116660542,116661920,+,LTR12C,LTR,ERV1,2,1579,0,116660541,116661920 +1 + chr12 116662013 116662114 chr12,116662013,116662114,-,MIR3,SINE,MIR,-67,141,43,116661946,116662156 -6 - chr12 116801023 116801186 chr12,116801020,116801186,-,MIRb,SINE,MIR,-43,225,54,116800977,116801239 -1 - chr12 116801406 116801477 chr12,116801406,116801603,+,MIRb,SINE,MIR,8,215,-53,116801399,116801656 +5 + chr12 116948757 116949055 chr12,116948757,116949055,-,AluJo,SINE,Alu,-15,297,1,116948742,116949055 +6 - chr12 116977450 116977589 chr12,116977450,116977589,-,L1MC5a,LINE,L1,-9,2768,2623,116977441,116980211 +6 - chr12 116980250 116980409 chr12,116979959,116980409,+,MLT1O,LTR,ERVL-MaLR,75,524,-18,116979885,116980427 -4 + chr12 116985654 116985708 chr12,116985495,116985708,-,MIRb,SINE,MIR,-50,218,2,116985445,116985709 +4 - chr12 116986406 116986655 chr12,116986406,116986655,+,AluY,SINE,Alu,61,311,0,116986346,116986655 -6 + chr12 117453323 117453372 chr12,117453323,117453372,+,(AGAGAC)n,Simple_repeat,Simple_repeat,1,51,0,117453323,117453372 +6 + chr12 117889466 117889516 chr12,117889466,117889516,-,MER131,DNA?,DNA?,-73,142,94,117889393,117889609 -6 - chr12 117889723 117889738 chr12,117889723,117889941,+,MER20,DNA,hAT-Charlie,1,218,-1,117889723,117889942 +4 + chr12 117890791 117890842 chr12,117890791,117890842,+,MIRc,SINE,MIR,11,62,-206,117890781,117891048 +6 + chr12 118428288 118428490 chr12,118428288,118428490,-,MER117,DNA,hAT-Charlie,-1,196,1,118428287,118428490 -6 - chr12 118428709 118428773 chr12,118428709,118428773,-,L3,LINE,CR1,-714,3385,3320,118427995,118432092 -6 - chr12 118428792 118428870 chr12,118428792,118429000,+,MER58A,DNA,hAT-Charlie,2,213,-11,118428791,118429011 +5 + chr12 118430147 118430273 chr12,118429589,118430273,-,MER50,LTR,ERV1,0,734,1,118429589,118430273 -1 - chr12 118430290 118430378 chr12,118430290,118430378,-,MIRb,SINE,MIR,-60,208,117,118430230,118430494 -6 - chr12 118430508 118430553 chr12,118430508,118430553,-,L2b,LINE,L2,-11,3364,3320,118430497,118433872 -6 - chr12 118430578 118430699 chr12,118430578,118431090,+,MER44B,DNA,TcMar-Tigger,2,550,0,118430577,118431090 +5 + chr12 118645315 118645327 chr12,118645302,118645327,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,118645302,118645327 -5 + chr12 118647875 118647954 chr12,118647728,118648012,-,MLT1J,LTR,ERVL-MaLR,-194,318,1,118647534,118648012 +3 - chr12 118648484 118648724 chr12,118648389,118648848,-,LTR16A,LTR,ERVL,0,451,1,118648389,118648848 +1 - chr12 118758917 118759031 chr12,118758917,118759153,+,MIRb,SINE,MIR,26,260,-8,118758892,118759161 -2 + chr12 118773032 118773302 chr12,118772686,118773479,-,LTR1B1,LTR,ERV1,0,818,1,118772686,118773479 +5 - chr12 118773611 118773775 chr12,118773479,118773854,+,MLT1C,LTR,ERVL-MaLR,79,466,-1,118773401,118773855 -3 + chr12 118774927 118775018 chr12,118774908,118775018,-,L2b,LINE,L2,-15,3360,3244,118774893,118778261 +4 - chr12 118832976 118833043 chr12,118832976,118833379,+,LTR16C,LTR,ERVL,83,487,-2,118832894,118833381 -2 + chr12 118891389 118891481 chr12,118891352,118891901,-,L2a,LINE,L2,0,3426,2783,118891352,118894683 +3 - chr12 119001127 119001321 chr12,119001035,119001386,-,MLT1I,LTR,ERVL-MaLR,-6,405,56,119001029,119001441 -3 - chr12 119001651 119001704 chr12,119001528,119001704,-,MIR,SINE,MIR,0,262,76,119001528,119001779 -2 - chr12 119001704 119001842 chr12,119001704,119002001,+,AluJb,SINE,Alu,5,301,-11,119001700,119002012 +5 + chr12 119031039 119031322 chr12,119031000,119031530,-,MLT1F2,LTR,ERVL-MaLR,-3,557,1,119030997,119031530 +5 - chr12 119174098 119174338 chr12,119174098,119174338,+,MIRb,SINE,MIR,5,261,-1,119174094,119174339 -6 + chr12 119174412 119174521 chr12,119174412,119174521,-,L2a,LINE,L2,-2,3424,3314,119174410,119177834 +6 - chr12 119182089 119182199 chr12,119182089,119182199,+,MIRb,SINE,MIR,40,153,-55,119182050,119182254 -6 + chr12 119182874 119182932 chr12,119182744,119182932,-,MIRb,SINE,MIR,-39,229,43,119182705,119182974 +4 - chr12 119182936 119183074 chr12,119182936,119183074,+,MIRb,SINE,MIR,55,188,-20,119182882,119183094 -6 + chr12 119183128 119183212 chr12,119183128,119183212,+,MER103C,DNA,hAT-Charlie,109,190,-107,119183020,119183319 -6 + chr12 119226387 119226475 chr12,119226173,119226475,+,LTR16A,LTR,ERVL,135,443,-8,119226039,119226483 -4 + chr12 119226477 119226547 chr12,119226477,119226596,+,L2a,LINE,L2,2792,2912,-507,119223686,119227103 -2 + chr12 119236919 119237016 chr12,119236919,119237152,+,MIR,SINE,MIR,38,262,0,119236882,119237152 -2 + chr12 119387987 119388184 chr12,119387940,119388184,-,MLT1L,LTR,ERVL-MaLR,0,610,352,119387940,119388535 +5 - chr12 119388202 119388324 chr12,119388202,119388324,-,MLT1L,LTR,ERVL-MaLR,-354,256,130,119387848,119388453 +6 - chr12 119402338 119402430 chr12,119402338,119402434,+,MIRc,SINE,MIR,46,140,-128,119402293,119402562 -2 + chr12 119553616 119553645 chr12,119553616,119553695,+,MIR3,SINE,MIR,104,182,-26,119553513,119553721 -2 + chr12 119699768 119699849 chr12,119699718,119699849,+,MLT1H2,LTR,ERVL-MaLR,343,489,0,119699376,119699849 +1 + chr12 120117231 120117295 chr12,120117231,120117295,+,(GGCCCC)n,Simple_repeat,Simple_repeat,1,64,0,120117231,120117295 +6 + chr12 120117874 120117998 chr12,120117874,120117998,+,AluSq2,SINE,Alu,175,298,-15,120117700,120118013 +6 + chr12 120118223 120118346 chr12,120118223,120118346,-,L1ME4b,LINE,L1,-2213,564,450,120116010,120118795 -6 - chr12 120118660 120118783 chr12,120118660,120118783,+,MIRc,SINE,MIR,30,135,-133,120118631,120118916 +6 + chr12 120118870 120119000 chr12,120118870,120119018,-,MamSINE1,SINE,tRNA-RTE,-90,200,42,120118780,120119059 -5 - chr12 120209991 120210120 chr12,120209991,120210120,+,MIRb,SINE,MIR,7,146,-122,120209985,120210242 +5 + chr12 120212758 120212855 chr12,120212758,120212855,-,AluJr,SINE,Alu,-187,125,26,120212571,120212880 -5 - chr12 120212868 120212968 chr12,120212868,120212968,-,MIR,SINE,MIR,-126,136,31,120212742,120212998 -5 - chr12 120213030 120213096 chr12,120213030,120213096,-,MER103C,DNA,hAT-Charlie,-86,211,154,120212944,120213249 -6 - chr12 120213096 120213138 chr12,120213096,120213401,+,AluSx,SINE,Alu,1,304,-8,120213096,120213409 +5 + chr12 120393502 120393577 chr12,120393414,120393649,-,MIRb,SINE,MIR,-6,262,20,120393408,120393668 -3 - chr12 120395855 120395914 chr12,120395795,120395914,-,MIR,SINE,MIR,-72,190,76,120395723,120395989 -2 - chr12 120490623 120490850 chr12,120490623,120490850,+,MER20,DNA,hAT-Charlie,3,219,0,120490621,120490850 -6 + chr12 120490878 120491137 chr12,120490878,120491137,-,MIRb,SINE,MIR,-8,260,1,120490870,120491137 +6 - chr12 120491862 120491887 chr12,120491862,120491887,+,(ATCC)n,Simple_repeat,Simple_repeat,1,25,0,120491862,120491887 -6 + chr12 120492010 120492110 chr12,120492010,120492220,+,MIRb,SINE,MIR,34,259,-9,120491977,120492229 -2 + chr12 120495927 120495940 chr12,120495927,120495980,+,LTR71B,LTR,ERV1,309,361,-249,120495619,120496229 -1 + chr12 120629623 120629924 chr12,120629623,120629924,-,AluSx,SINE,Alu,-10,302,1,120629613,120629924 +6 - chr12 120699053 120699077 chr12,120699053,120699077,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,120699053,120699077 -6 + chr12 120703896 120704120 chr12,120703896,120704120,-,MIRb,SINE,MIR,-8,260,26,120703888,120704145 -6 - chr12 120709265 120709358 chr12,120709265,120709358,-,L2b,LINE,L2,-6,3369,3269,120709259,120712626 -6 - chr12 120709411 120709497 chr12,120709411,120709497,+,MamRep1879,DNA,hAT-Tip100?,32,132,-84,120709380,120709581 +6 + chr12 120941728 120941795 chr12,120941674,120941795,-,MLT1J2,LTR,ERVL-MaLR,0,448,325,120941674,120942119 +5 - chr12 120968659 120968766 chr12,120968659,120968766,+,AluJb,SINE,Alu,28,137,-175,120968632,120968941 -6 + chr12 120968792 120968858 chr12,120968792,120968858,+,MER5A,DNA,hAT-Charlie,103,166,-23,120968690,120968881 -6 + chr12 120968989 120969008 chr12,120968989,120969118,-,L2c,LINE,L2,-318,3069,2932,120968671,120972049 +2 - chr12 120969838 120970119 chr12,120969808,120970119,-,AluSp,SINE,Alu,-1,312,1,120969807,120970119 +5 - chr12 120970119 120970263 chr12,120970119,120970263,+,MER113,DNA,hAT-Charlie,379,516,-5,120969741,120970268 -5 + chr12 120970334 120970497 chr12,120970334,120970497,-,MER63A,DNA,hAT-Blackjack,0,210,36,120970334,120970532 +6 - chr12 120970809 120971110 chr12,120970809,120971110,-,AluSz,SINE,Alu,-11,301,1,120970798,120971110 +6 - chr12 120971128 120971296 chr12,120971128,120971296,-,MIR,SINE,MIR,-36,172,5,120971092,120971300 +6 - chr12 120971230 120971331 chr12,120971230,120971331,+,MIRb,SINE,MIR,48,148,-120,120971183,120971451 -6 + chr12 120971379 120971396 chr12,120971379,120971396,+,(AAC)n,Simple_repeat,Simple_repeat,1,17,0,120971379,120971396 -6 + chr12 120971401 120971572 chr12,120971401,120971572,+,MIRb,SINE,MIR,1,206,-62,120971401,120971634 -6 + chr12 120971870 120972292 chr12,120971870,120972303,+,MER119,DNA,hAT-Charlie,56,497,-86,120971815,120972389 -1 + chr12 120974385 120974451 chr12,120974145,120974451,+,AluJb,SINE,Alu,1,305,-7,120974145,120974458 -5 + chr12 120974451 120974598 chr12,120974451,120974620,+,AluJo,SINE,Alu,135,301,-11,120974317,120974631 -2 + chr12 120976799 120976921 chr12,120976641,120976951,+,AluSx,SINE,Alu,1,309,-3,120976641,120976954 -3 + chr12 121019130 121019203 chr12,121019130,121019203,-,L2b,LINE,L2,-1,3374,3298,121019129,121022500 +6 - chr12 121191107 121191184 chr12,121191107,121191184,+,MIR,SINE,MIR,16,92,-176,121191092,121191360 +6 + chr12 121191184 121191518 chr12,121191184,121191567,+,THE1B,LTR,ERVL-MaLR,1,364,0,121191184,121191567 +5 + chr12 121391962 121391996 chr12,121391948,121391996,-,MIR1_Amn,SINE,MIR,-71,159,113,121391877,121392108 -1 - chr12 121648757 121648936 chr12,121648757,121648936,-,L1ME4b,LINE,L1,0,892,684,121648757,121649619 +6 - chr12 121648936 121649079 chr12,121648936,121649246,-,AluSg,SINE,Alu,-16,294,1,121648920,121649246 +1 - chr12 121800892 121800922 chr12,121800892,121800922,+,GA-rich,Low_complexity,Low_complexity,1,31,0,121800892,121800922 +6 + chr12 121800892 121800922 chr12,121800892,121800922,+,GA-rich,Low_complexity,Low_complexity,1,31,0,121800892,121800922 -6 + chr12 121800943 121800990 chr12,121800943,121800990,+,(CAGCC)n,Simple_repeat,Simple_repeat,1,50,0,121800943,121800990 +6 + chr12 121800943 121800990 chr12,121800943,121800990,+,(CAGCC)n,Simple_repeat,Simple_repeat,1,50,0,121800943,121800990 -6 + chr12 121803592 121803650 chr12,121803592,121803650,+,(CCCCCGG)n,Simple_repeat,Simple_repeat,1,60,0,121803592,121803650 -6 + chr12 121857045 121857059 chr12,121857045,121857065,+,(TGT)n,Simple_repeat,Simple_repeat,1,20,0,121857045,121857065 +5 + chr12 121874193 121874234 chr12,121874168,121874234,-,MIR3,SINE,MIR,-49,159,92,121874119,121874325 -1 - chr12 122007434 122007739 chr12,122007410,122007739,-,MER58B,DNA,hAT-Charlie,-8,333,3,122007402,122007741 +5 - chr12 122007801 122007934 chr12,122007801,122008034,+,L1MD3,LINE,L1,7626,7860,-135,122000176,122008169 -2 + chr12 122019436 122019871 chr12,122019436,122019871,-,L1MB5,LINE,L1,0,6174,5718,122019436,122025588 +6 - chr12 122020032 122020063 chr12,122020032,122020371,-,AluSg,SINE,Alu,0,310,1,122020032,122020371 +1 - chr12 122064181 122064568 chr12,122064181,122064568,+,MLT1K,LTR,ERVL-MaLR,145,559,-36,122064037,122064604 +1 + chr12 122064651 122064682 chr12,122064651,122064838,+,MIR,SINE,MIR,64,262,0,122064588,122064838 +5 + chr12 122065489 122065646 chr12,122065489,122065646,-,MIRc,SINE,MIR,-61,207,45,122065428,122065690 -6 - chr12 122065663 122065679 chr12,122065663,122065679,+,MER58A,DNA,hAT-Charlie,30,42,-182,122065634,122065861 +6 + chr12 122065679 122065822 chr12,122065679,122065992,-,AluSq2,SINE,Alu,0,313,1,122065679,122065992 -5 - chr12 122068491 122068616 chr12,122068491,122068780,+,L1ME1,LINE,L1,4903,5282,-864,122063589,122069644 +5 + chr12 122255225 122255348 chr12,122255225,122255348,+,L1ME2z,LINE,L1,6308,6438,-6,122248918,122255354 -6 + chr12 122255423 122255461 chr12,122255423,122255732,+,AluSq,SINE,Alu,1,308,-5,122255423,122255737 -2 + chr12 122259934 122260063 chr12,122259810,122260063,+,AluJr,SINE,Alu,76,303,-9,122259735,122260072 -4 + chr12 122260064 122260274 chr12,122260064,122260283,+,L1MB7,LINE,L1,5933,6152,-32,122254132,122260315 -1 + chr12 122399296 122399341 chr12,122399137,122399341,+,MIR1_Amn,SINE,MIR,19,218,-50,122399119,122399391 +2 + chr12 122501192 122501483 chr12,122501192,122501483,+,AluJr,SINE,Alu,1,305,-7,122501192,122501490 +6 + chr12 122634324 122634673 chr12,122634324,122634735,+,MER68C,LTR,ERVL,3,419,0,122634322,122634735 +5 + chr12 122714291 122714443 chr12,122714129,122714443,-,AluSx1,SINE,Alu,-3,309,1,122714126,122714443 -1 - chr12 122870469 122870742 chr12,122870469,122870742,+,AluJo,SINE,Alu,10,299,-13,122870460,122870755 -6 + chr12 122872695 122873329 chr12,122872695,122873329,+,L1MD1,LINE,L1,5557,6240,-2,122867139,122873331 -6 + chr12 122873482 122873578 chr12,122873482,122873578,-,L2a,LINE,L2,-2,3424,3320,122873480,122876897 +6 - chr12 122873681 122873890 chr12,122873681,122873890,+,L2c,LINE,L2,3144,3383,-4,122870538,122873894 -6 + chr12 122874237 122874411 chr12,122874237,122874411,+,MER5B,DNA,hAT-Charlie,1,171,-7,122874237,122874418 -6 + chr12 122874666 122874977 chr12,122874666,122874977,+,AluSp,SINE,Alu,1,313,0,122874666,122874977 -6 + chr12 122875063 122875372 chr12,122875063,122875372,-,AluSz6,SINE,Alu,-19,293,3,122875044,122875374 +6 - chr12 122875845 122875866 chr12,122875845,122875866,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,122875845,122875866 -6 + chr12 122875874 122876299 chr12,122875874,122876299,+,HAL1b,LINE,L1,1898,2395,-26,122873977,122876325 -6 + chr12 122876427 122876731 chr12,122876427,122876731,+,AluSx1,SINE,Alu,1,302,-10,122876427,122876741 -6 + chr12 122876857 122876893 chr12,122876857,122876893,+,(CAGAGG)n,Simple_repeat,Simple_repeat,1,39,0,122876857,122876893 -6 + chr12 122877374 122877547 chr12,122877374,122877547,-,AluJb,SINE,Alu,-5,307,135,122877369,122877681 +6 - chr12 122877594 122877725 chr12,122877594,122877725,+,L2c,LINE,L2,3022,3160,-215,122874573,122877940 -6 + chr12 122877777 122877861 chr12,122877777,122877861,-,L1MB8,LINE,L1,-10,6168,6085,122877767,122883945 +6 - chr12 122878078 122878387 chr12,122878078,122878387,+,AluSc,SINE,Alu,1,309,0,122878078,122878387 -6 + chr12 122878463 122878633 chr12,122878463,122878633,+,MLT1D,LTR,ERVL-MaLR,1,175,-330,122878463,122878963 -6 + chr12 122878633 122878951 chr12,122878633,122878951,-,AluSz,SINE,Alu,-7,305,1,122878626,122878951 +6 - chr12 122878951 122879225 chr12,122878951,122879225,+,MLT1D,LTR,ERVL-MaLR,176,504,-1,122878776,122879226 -6 + chr12 122879225 122879658 chr12,122879225,122879658,+,LTR33,LTR,ERVL,2,515,0,122879224,122879658 -6 + chr12 122879728 122879829 chr12,122879728,122879829,+,L2c,LINE,L2,3291,3416,-10,122876438,122879839 -6 + chr12 122879831 122880084 chr12,122879831,122880084,+,AluSz,SINE,Alu,5,253,-59,122879827,122880143 -6 + chr12 122880459 122880534 chr12,122880459,122880534,-,Chap1_Mam,DNA,hAT-Charlie,-129,213,129,122880330,122880662 +6 - chr12 122880553 122880682 chr12,122880553,122880682,+,FLAM_C,SINE,Alu,6,133,-10,122880548,122880692 -6 + chr12 122880797 122880855 chr12,122880797,122880855,-,L2c,LINE,L2,-1,3386,3328,122880796,122884182 +6 - chr12 122880921 122880963 chr12,122880921,122880963,+,MER91C,DNA,hAT-Tip100,27,68,-72,122880895,122881035 -6 + chr12 122881137 122881329 chr12,122881137,122881329,-,MIRb,SINE,MIR,-9,259,52,122881128,122881380 +6 - chr12 122881333 122881453 chr12,122881333,122881453,+,FLAM_A,SINE,Alu,6,125,-17,122881328,122881470 -6 + chr12 122881457 122881713 chr12,122881457,122881713,+,AluJb,SINE,Alu,2,255,-57,122881456,122881770 -6 + chr12 122881812 122882310 chr12,122881812,122882310,-,L1MC5a,LINE,L1,-9,2768,2474,122881803,122884783 +6 - chr12 122882334 122882443 chr12,122882334,122882443,-,L1MC5a,LINE,L1,-1237,1540,1427,122881097,122883869 +6 - chr12 122883480 122883778 chr12,122883480,122883778,-,AluSc,SINE,Alu,-5,304,1,122883475,122883778 +6 - chr12 122884027 122884084 chr12,122884027,122884084,+,MER5A,DNA,hAT-Charlie,72,129,-60,122883956,122884144 -6 + chr12 122884271 122884594 chr12,122884271,122884594,-,Tigger13a,DNA,TcMar-Tigger,-281,490,146,122883990,122884739 +6 - chr12 122885306 122885535 chr12,122885306,122885535,+,L1ME4a,LINE,L1,5682,5923,-201,122879625,122885736 -6 + chr12 122885547 122885663 chr12,122885547,122885663,+,L1ME4a,LINE,L1,5980,6099,-25,122879568,122885688 -6 + chr12 122885671 122885982 chr12,122885671,122885982,-,AluY,SINE,Alu,0,311,1,122885671,122885982 +6 - chr12 122885992 122886197 chr12,122885992,122886197,-,Tigger15a,DNA,TcMar-Tigger,-96,619,406,122885896,122886602 +6 - chr12 122886339 122886605 chr12,122886339,122886605,+,AluJo,SINE,Alu,1,293,-19,122886339,122886624 -6 + chr12 122886741 122886911 chr12,122886741,122886911,-,MIRb,SINE,MIR,-8,260,87,122886733,122886997 +6 - chr12 122887198 122887803 chr12,122887198,122887803,+,L2b,LINE,L2,2727,3374,-1,122884472,122887804 -6 + chr12 122887869 122888002 chr12,122887869,122888002,-,FLAM_A,SINE,Alu,-8,134,1,122887861,122888002 +6 - chr12 122976656 122976708 chr12,122976656,122976708,+,(GAGCAG)n,Simple_repeat,Simple_repeat,1,52,0,122976656,122976708 +6 + chr12 122977241 122977380 chr12,122977241,122977380,-,LTR33,LTR,ERVL,-26,489,349,122977215,122977728 -6 - chr12 122977519 122977676 chr12,122977519,122977676,+,MIR,SINE,MIR,95,262,0,122977425,122977676 +6 + chr12 122978069 122978203 chr12,122978069,122978203,+,MIR1_Amn,SINE,MIR,9,144,-86,122978061,122978289 +6 + chr12 122978297 122978409 chr12,122978297,122978409,-,MIR,SINE,MIR,-64,198,84,122978233,122978492 -6 - chr12 122979541 122979634 chr12,122979541,122979634,-,LTR16A1,LTR,ERVL,-92,364,269,122979449,122979902 -6 - chr12 122979852 122980035 chr12,122979852,122980035,+,MIR,SINE,MIR,6,212,-50,122979847,122980085 +6 + chr12 122981634 122981701 chr12,122981634,122981701,+,(CTC)n,Simple_repeat,Simple_repeat,1,67,0,122981634,122981701 +6 + chr12 122981712 122981795 chr12,122981712,122981795,+,GA-rich,Low_complexity,Low_complexity,1,84,0,122981712,122981795 +6 + chr12 123081593 123081654 chr12,123081593,123081654,-,MIR3,SINE,MIR,-55,153,92,123081538,123081745 -6 - chr12 123082790 123082959 chr12,123082734,123083065,-,L1MB3,LINE,L1,-50,6133,5809,123082684,123088873 -1 - chr12 123083235 123083336 chr12,123083207,123083336,+,L2a,LINE,L2,3279,3425,-1,123079929,123083337 +2 + chr12 123083339 123083368 chr12,123083339,123083368,+,(ATGA)n,Simple_repeat,Simple_repeat,1,29,0,123083339,123083368 +6 + chr12 123087256 123087536 chr12,123087236,123087536,-,AluSz,SINE,Alu,0,312,1,123087236,123087536 +5 - chr12 123087612 123087890 chr12,123087612,123087890,-,AluJr,SINE,Alu,-6,306,29,123087606,123087918 +6 - chr12 123087919 123088481 chr12,123087919,123088481,+,L2a,LINE,L2,2731,3416,-10,123085189,123088491 -6 + chr12 123088525 123088563 chr12,123088525,123088563,+,G-rich,Low_complexity,Low_complexity,1,38,0,123088525,123088563 -6 + chr12 123088972 123089013 chr12,123088972,123089013,+,MIRb,SINE,MIR,226,265,-3,123088747,123089016 -6 + chr12 123089049 123089110 chr12,123089049,123089110,+,L2c,LINE,L2,3326,3385,-2,123085724,123089112 -6 + chr12 123089997 123090369 chr12,123089997,123090369,-,MLT1F,LTR,ERVL-MaLR,-6,542,163,123089991,123090531 +6 - chr12 123090369 123090672 chr12,123090369,123090672,-,AluSz,SINE,Alu,-17,295,1,123090352,123090672 +6 - chr12 123090672 123090826 chr12,123090672,123090826,-,MLT1F,LTR,ERVL-MaLR,-386,162,1,123090286,123090826 +6 - chr12 123090843 123090916 chr12,123090843,123090916,-,MIRb,SINE,MIR,-50,218,139,123090793,123091054 +6 - chr12 123092266 123092398 chr12,123092266,123092398,+,AluJr,SINE,Alu,6,133,-179,123092261,123092577 -6 + chr12 123152332 123152402 chr12,123152332,123152402,-,L2c,LINE,L2,-13,3374,3283,123152319,123155684 +6 - chr12 123252030 123252056 chr12,123251884,123252056,-,MLT2A1,LTR,ERVL,-83,361,194,123251801,123252249 +5 - chr12 123252151 123252447 chr12,123252151,123252447,+,AluJb,SINE,Alu,1,298,-14,123252151,123252461 -5 + chr12 123260274 123260503 chr12,123260008,123260594,+,LTR10C,LTR,ERV1,1,591,0,123260008,123260594 -1 + chr12 123260826 123260962 chr12,123260632,123260962,+,AluJb,SINE,Alu,3,294,-18,123260630,123260980 -4 + chr12 123364773 123364806 chr12,123364773,123364806,+,(GCG)n,Simple_repeat,Simple_repeat,1,33,0,123364773,123364806 +6 + chr12 123364840 123364869 chr12,123364840,123364869,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,29,0,123364840,123364869 +6 + chr12 123364929 123364986 chr12,123364929,123364986,+,(CTCC)n,Simple_repeat,Simple_repeat,1,58,0,123364929,123364986 +1 + chr12 123366025 123366066 chr12,123366025,123366066,+,(ATAT)n,Simple_repeat,Simple_repeat,1,42,0,123366025,123366066 +6 + chr12 123473156 123473212 chr12,123473156,123473212,+,MER113A,DNA,hAT-Charlie,148,209,-105,123473009,123473317 -6 + chr12 123473232 123473529 chr12,123473232,123473529,+,AluSz,SINE,Alu,1,297,-15,123473232,123473544 -6 + chr12 123473819 123473853 chr12,123473819,123473853,+,(A)n,Simple_repeat,Simple_repeat,1,34,0,123473819,123473853 -6 + chr12 123473884 123474185 chr12,123473884,123474185,-,AluSq2,SINE,Alu,-2,311,1,123473882,123474185 +6 - chr12 123474360 123474653 chr12,123474360,123474653,-,AluSz,SINE,Alu,-21,291,1,123474339,123474653 +6 - chr12 123475897 123476093 chr12,123475897,123476174,-,AluSx1,SINE,Alu,-6,306,31,123475891,123476204 +1 - chr12 123515443 123515513 chr12,123515443,123515744,-,AluSc,SINE,Alu,-5,304,6,123515438,123515749 +1 - chr12 123575891 123575930 chr12,123575863,123575930,-,LTR33A,LTR,ERVL,-16,504,438,123575847,123576367 +5 - chr12 123575935 123576283 chr12,123575935,123576283,-,MLT1F,LTR,ERVL-MaLR,0,548,153,123575935,123576435 +6 - chr12 123576297 123576411 chr12,123576297,123576411,+,AluSz,SINE,Alu,1,114,-198,123576297,123576609 -6 + chr12 123576411 123576655 chr12,123576411,123576655,-,AluSz6,SINE,Alu,-62,250,1,123576349,123576655 +6 - chr12 123576655 123577043 chr12,123576655,123577043,+,L1MB7,LINE,L1,5693,6120,-64,123570963,123577107 -6 + chr12 123577043 123577343 chr12,123577043,123577343,-,AluSz,SINE,Alu,-14,298,9,123577029,123577351 +6 - chr12 123577343 123577406 chr12,123577343,123577406,+,L1MB7,LINE,L1,6121,6170,-14,123571223,123577420 -6 + chr12 123577508 123577561 chr12,123577508,123577561,-,L2a,LINE,L2,-1,3425,3373,123577507,123580933 +6 - chr12 123577645 123577952 chr12,123577645,123577952,+,AluSq2,SINE,Alu,1,306,-7,123577645,123577959 -6 + chr12 123577964 123578255 chr12,123577964,123578255,+,AluSx1,SINE,Alu,1,301,-11,123577964,123578266 -6 + chr12 123578626 123578727 chr12,123578626,123578727,+,MER102c,DNA,hAT-Charlie,224,328,-3,123578403,123578730 -6 + chr12 123578796 123579111 chr12,123578796,123579111,-,AluJo,SINE,Alu,-7,305,1,123578789,123579111 +6 - chr12 123579261 123579283 chr12,123579261,123579283,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,123579261,123579283 -6 + chr12 123579283 123579604 chr12,123579283,123579604,+,AluJo,SINE,Alu,2,312,0,123579282,123579604 -6 + chr12 123579656 123579965 chr12,123579656,123579965,+,AluSx,SINE,Alu,1,299,-13,123579656,123579978 -6 + chr12 123579967 123580276 chr12,123579967,123580276,+,AluY,SINE,Alu,3,302,-9,123579965,123580285 -6 + chr12 123580278 123580481 chr12,123580278,123580481,-,LTR67B,LTR,ERVL,-45,575,366,123580233,123580846 +6 - chr12 123580481 123580545 chr12,123580481,123580545,+,Tigger2b_Pri,DNA,TcMar-Tigger,1,64,-1004,123580481,123581549 -6 + chr12 123580548 123580855 chr12,123580548,123580855,+,AluSx1,SINE,Alu,1,307,-5,123580548,123580860 -6 + chr12 123580855 123581153 chr12,123580855,123581153,+,Tigger2,DNA,TcMar-Tigger,2283,2581,-137,123578573,123581290 -6 + chr12 123581153 123581465 chr12,123581153,123581465,+,AluSx1,SINE,Alu,1,312,0,123581153,123581465 -6 + chr12 123581465 123581529 chr12,123581465,123581529,+,Tigger2,DNA,TcMar-Tigger,2582,2635,-83,123578884,123581612 -6 + chr12 123581529 123581828 chr12,123581529,123581828,+,AluSq2,SINE,Alu,1,304,-9,123581529,123581837 -6 + chr12 123581828 123581853 chr12,123581828,123581853,+,Tigger2,DNA,TcMar-Tigger,2636,2652,-66,123579193,123581919 -6 + chr12 123581853 123582148 chr12,123581853,123582148,+,AluSx1,SINE,Alu,1,293,-19,123581853,123582167 -6 + chr12 123582148 123582214 chr12,123582148,123582214,+,Tigger2,DNA,TcMar-Tigger,2653,2718,0,123579496,123582214 -6 + chr12 123582309 123582482 chr12,123582309,123582482,-,MIRc,SINE,MIR,-63,205,29,123582246,123582510 +6 - chr12 123582633 123582816 chr12,123582633,123582816,-,L2b,LINE,L2,-188,3199,3002,123582445,123585817 +6 - chr12 123582869 123582911 chr12,123582869,123582911,-,L1ME3,LINE,L1,-8,6154,6113,123582861,123589023 +6 - chr12 123582911 123583167 chr12,123582911,123583210,+,AluSq2,SINE,Alu,2,298,-15,123582910,123583225 -2 + chr12 123583601 123583698 chr12,123583580,123583724,+,AluSz,SINE,Alu,1,133,-179,123583580,123583903 -3 + chr12 123584560 123584591 chr12,123584560,123584591,+,(GCG)n,Simple_repeat,Simple_repeat,1,32,0,123584560,123584591 -6 + chr12 123584948 123584974 chr12,123584948,123584974,+,(CCGCC)n,Simple_repeat,Simple_repeat,1,26,0,123584948,123584974 -6 + chr12 123649068 123649268 chr12,123648973,123649268,-,AluSq2,SINE,Alu,-22,291,1,123648951,123649268 -1 - chr12 123649290 123649492 chr12,123649290,123649492,-,MER20,DNA,hAT-Charlie,-9,210,1,123649281,123649492 -6 - chr12 123649494 123649627 chr12,123649494,123649627,+,L2,LINE,L2,2712,2860,-559,123646783,123650186 +6 + chr12 123649643 123649683 chr12,123649643,123649683,-,MER5A,DNA,hAT-Charlie,-3,186,147,123649640,123649829 -6 - chr12 123649683 123649905 chr12,123649683,123649905,+,L1MB8,LINE,L1,5938,6156,-22,123643746,123649927 +6 + chr12 123649915 123650067 chr12,123649915,123650067,-,MER5A,DNA,hAT-Charlie,-28,161,1,123649887,123650067 -6 - chr12 123655528 123655676 chr12,123655504,123655676,+,MIRb,SINE,MIR,3,199,-69,123655502,123655745 +1 + chr12 123655864 123656036 chr12,123655864,123656036,+,MER33,DNA,hAT-Charlie,147,323,-1,123655718,123656037 +6 + chr12 123656045 123656128 chr12,123656045,123656159,-,HAL1b,LINE,L1,-279,2142,2026,123655766,123658184 -5 - chr12 123707726 123707777 chr12,123707726,123708007,-,AluSq,SINE,Alu,-18,295,1,123707708,123708007 +2 - chr12 123708242 123708292 chr12,123708007,123708292,-,AluSx1,SINE,Alu,-7,305,1,123708000,123708292 +4 - chr12 123754569 123754663 chr12,123754569,123754663,+,MER119,DNA,hAT-Charlie,29,130,-453,123754541,123755116 -6 + chr12 123754673 123754740 chr12,123754673,123754740,+,MER119,DNA,hAT-Charlie,475,541,-42,123754199,123754782 -6 + chr12 123925461 123925670 chr12,123925374,123925670,-,MER33,DNA,hAT-Charlie,0,324,1,123925374,123925670 +5 - chr12 123925784 123925931 chr12,123925784,123925931,-,MER102a,DNA,hAT-Charlie,-110,220,71,123925674,123926001 +6 - chr12 123925941 123926083 chr12,123925941,123926265,+,AluJr,SINE,Alu,1,312,0,123925941,123926265 -1 + chr12 123960717 123960768 chr12,123960663,123960768,+,Charlie18a,DNA,hAT-Charlie,44,148,-194,123960620,123960962 -5 + chr12 123961190 123961244 chr12,123961190,123961310,+,L2c,LINE,L2,3258,3369,-18,123957933,123961328 -1 + chr12 123969997 123970039 chr12,123969997,123970039,+,MIRc,SINE,MIR,214,255,-13,123969784,123970052 -6 + chr12 124085761 124085843 chr12,124085675,124085843,+,LTR16C,LTR,ERVL,301,482,-7,124085375,124085850 +1 + chr12 124086089 124086348 chr12,124086089,124086348,-,HAL1ME,LINE,L1,-9,2456,2208,124086080,124088555 -6 - chr12 124086350 124086856 chr12,124086350,124086856,+,MLT1E3,LTR,ERVL-MaLR,2,536,-88,124086349,124086944 +6 + chr12 124086859 124087153 chr12,124086859,124087153,-,AluJr,SINE,Alu,-13,299,1,124086846,124087153 -6 - chr12 124087370 124087501 chr12,124087370,124087501,-,MER58A,DNA,hAT-Charlie,-37,187,50,124087333,124087550 -6 - chr12 124206724 124206786 chr12,124206724,124206786,+,MIR,SINE,MIR,181,242,-20,124206544,124206806 +6 + chr12 124207624 124207752 chr12,124207624,124207752,+,L2c,LINE,L2,3258,3382,-5,124204367,124207757 +6 + chr12 124207796 124207921 chr12,124207796,124207921,-,MIRc,SINE,MIR,-50,218,93,124207746,124208013 -6 - chr12 124208831 124208917 chr12,124208737,124208917,-,Charlie1a,DNA,hAT-Charlie,-280,1175,1004,124208457,124209920 -2 - chr12 124208921 124209011 chr12,124208921,124209011,-,Charlie1b,DNA,hAT-Charlie,-359,164,71,124208562,124209081 -6 - chr12 124513578 124513697 chr12,124513578,124513713,+,MIR,SINE,MIR,74,213,-49,124513505,124513762 +4 + chr12 124514008 124514060 chr12,124513991,124514060,-,L2a,LINE,L2,-13,3413,3315,124513978,124517374 -2 - chr12 124514075 124514364 chr12,124514075,124514364,+,MLT1A0,LTR,ERVL-MaLR,1,328,-37,124514075,124514401 +6 + chr12 124514473 124514564 chr12,124514473,124514564,-,L2a,LINE,L2,-273,3153,3054,124514200,124517617 -6 - chr12 124514564 124514813 chr12,124514564,124514838,+,AluSz6,SINE,Alu,1,303,-9,124514564,124514847 +5 + chr12 124529782 124530228 chr12,124529782,124530476,+,L1ME1,LINE,L1,5460,6175,-4,124524323,124530480 -1 + chr12 124538035 124538065 chr12,124538035,124538065,+,(CAGGC)n,Simple_repeat,Simple_repeat,1,31,0,124538035,124538065 +6 + chr12 124538450 124538504 chr12,124538450,124538504,+,(GGCAGGA)n,Simple_repeat,Simple_repeat,1,59,0,124538450,124538504 +6 + chr12 124538865 124538991 chr12,124538865,124538991,-,MIRb,SINE,MIR,-79,183,47,124538786,124539037 -6 - chr12 124539230 124539304 chr12,124539230,124539304,+,(CACT)n,Simple_repeat,Simple_repeat,1,75,0,124539230,124539304 +6 + chr12 124539281 124539331 chr12,124539281,124539331,+,(CACTCA)n,Simple_repeat,Simple_repeat,1,51,0,124539281,124539331 +6 + chr12 124555919 124556062 chr12,124555919,124556062,-,MIRb,SINE,MIR,-19,249,110,124555900,124556171 -6 - chr12 124556355 124556432 chr12,124556355,124556577,-,L2a,LINE,L2,-7,3419,3146,124556348,124559722 -5 - chr12 124561869 124562024 chr12,124561733,124562024,+,AluJr,SINE,Alu,1,291,-21,124561733,124562045 +1 + chr12 124562141 124562283 chr12,124562141,124562315,-,MER3,DNA,hAT-Charlie,-18,191,16,124562123,124562330 -5 - chr12 124593460 124593691 chr12,124593460,124593727,+,LTR16A1,LTR,ERVL,142,449,-7,124593319,124593734 -1 + chr12 124622290 124622373 chr12,124622288,124622373,+,L2b,LINE,L2,2962,3048,-327,124619327,124622700 -5 + chr12 124622402 124622497 chr12,124622402,124622497,+,(TGCACC)n,Simple_repeat,Simple_repeat,1,98,0,124622402,124622497 -6 + chr12 124622513 124622583 chr12,124622513,124622583,+,L2b,LINE,L2,3024,3093,-282,124619490,124622865 -6 + chr12 124623399 124623920 chr12,124623399,124623920,+,MLT1G3,LTR,ERVL-MaLR,1,575,-16,124623399,124623936 +6 + chr12 124638135 124638444 chr12,124638135,124638469,+,MLT1A0,LTR,ERVL-MaLR,1,344,-21,124638135,124638490 -1 + chr12 124725921 124725934 chr12,124725921,124726253,-,MLT1K,LTR,ERVL-MaLR,-7,588,241,124725914,124726493 -5 - chr12 125139406 125139526 chr12,125139406,125139526,+,MIR3,SINE,MIR,49,185,-83,125139358,125139609 +6 + chr12 125139753 125139899 chr12,125139753,125139899,+,L2b,LINE,L2,3216,3372,-3,125136538,125139902 +6 + chr12 125139976 125140014 chr12,125139976,125140014,-,MIR3,SINE,MIR,-75,133,90,125139901,125140103 -6 - chr12 125140996 125141149 chr12,125140996,125141149,-,MIR,SINE,MIR,-35,227,63,125140961,125141211 -6 - chr12 125141404 125141711 chr12,125141404,125141726,+,AluY,SINE,Alu,1,311,0,125141404,125141726 +5 + chr12 125150075 125150183 chr12,125150075,125150183,+,MLT1E3,LTR,ERVL-MaLR,479,624,0,125149597,125150183 +6 + chr12 125150247 125150369 chr12,125150247,125150369,+,L2c,LINE,L2,3268,3379,-8,125146980,125150377 +6 + chr12 125150433 125150494 chr12,125150433,125150494,-,MLT1K,LTR,ERVL-MaLR,-110,485,424,125150323,125150917 -6 - chr12 125150510 125150549 chr12,125150510,125150549,+,MIR,SINE,MIR,2,39,-223,125150509,125150772 +6 + chr12 125150549 125150585 chr12,125150549,125150739,+,MER53,DNA,hAT,3,193,0,125150547,125150739 +4 + chr12 125151350 125151394 chr12,125151350,125151616,-,MLT1K,LTR,ERVL-MaLR,-304,291,22,125151046,125151637 -5 - chr12 125160595 125160934 chr12,125160595,125160934,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,125160595,125160934 +6 + chr12 125160977 125161091 chr12,125160977,125161091,-,L1ME3Cz,LINE,L1,-431,566,468,125160546,125161558 -6 - chr12 125161256 125161304 chr12,125161256,125161304,+,(CTCTCT)n,Simple_repeat,Simple_repeat,1,136,-43,125161256,125161347 +6 + chr12 125161304 125161419 chr12,125161304,125161419,+,(CT)n,Simple_repeat,Simple_repeat,1,118,0,125161304,125161419 +6 + chr12 125161419 125161432 chr12,125161419,125161432,+,(CTCTCT)n,Simple_repeat,Simple_repeat,137,179,0,125161283,125161432 +6 + chr12 125161434 125161557 chr12,125161434,125161557,-,AluYj4,SINE,Alu,-1,310,188,125161433,125161744 -6 - chr12 125162235 125162581 chr12,125162235,125162581,-,MLT1N2,LTR,ERVL-MaLR,-3,559,186,125162232,125162766 -6 - chr12 125162615 125162858 chr12,125162615,125162858,+,MIR,SINE,MIR,2,260,-2,125162614,125162860 +6 + chr12 125162860 125162887 chr12,125162860,125162887,+,(ATT)n,Simple_repeat,Simple_repeat,1,27,0,125162860,125162887 +6 + chr12 125162887 125163167 chr12,125162887,125163167,-,AluSc,SINE,Alu,-28,281,1,125162859,125163167 -6 - chr12 125163310 125163412 chr12,125163310,125163412,-,MamGypLTR1d,LTR,Gypsy,-61,742,635,125163249,125164046 -6 - chr12 125163436 125163564 chr12,125163436,125163564,+,MER102c,DNA,hAT-Charlie,203,329,-2,125163234,125163566 +6 + chr12 125163568 125163605 chr12,125163568,125163605,-,MamGypLTR1d,LTR,Gypsy,-615,198,162,125162953,125163766 -6 - chr12 125163605 125163914 chr12,125163605,125163914,+,AluY,SINE,Alu,1,311,0,125163605,125163914 +6 + chr12 125163921 125164231 chr12,125163921,125164231,+,AluSz,SINE,Alu,2,312,0,125163920,125164231 +6 + chr12 125164231 125164339 chr12,125164231,125164339,-,MamGypLTR1d,LTR,Gypsy,-652,161,67,125163579,125164405 -6 - chr12 125164367 125164536 chr12,125164367,125164536,-,MLT1J,LTR,ERVL-MaLR,-76,466,315,125164291,125164850 -6 - chr12 125164705 125164918 chr12,125164705,125165573,-,ERVL-E-int,LTR,ERVL,-4174,1540,542,125160531,125166114 -5 - chr12 125301019 125301075 chr12,125301019,125301075,+,(TATG)n,Simple_repeat,Simple_repeat,1,58,0,125301019,125301075 +6 + chr12 125301134 125301306 chr12,125301134,125301306,-,MIRb,SINE,MIR,-6,262,50,125301128,125301355 -6 - chr12 125301319 125301561 chr12,125301319,125301561,+,MLT1H,LTR,ERVL-MaLR,91,342,-207,125301229,125301768 +6 + chr12 125301596 125301917 chr12,125301596,125301917,+,AluY,SINE,Alu,1,311,0,125301596,125301917 +5 + chr12 125858873 125859110 chr12,125858873,125859110,-,MIRc,SINE,MIR,-4,264,9,125858869,125859118 -6 - chr12 125859806 125859882 chr12,125859806,125859882,-,L2b,LINE,L2,-4,3371,3302,125859802,125863183 -6 - chr12 125860476 125860524 chr12,125860476,125860524,+,(ATGT)n,Simple_repeat,Simple_repeat,1,48,0,125860476,125860524 +6 + chr12 125958707 125958952 chr12,125958707,125959137,-,MLT1J,LTR,ERVL-MaLR,-12,500,44,125958695,125959180 +2 - chr12 125961901 125962264 chr12,125961901,125962264,+,THE1B,LTR,ERVL-MaLR,1,364,0,125961901,125962264 -6 + chr12 125962337 125962419 chr12,125962337,125962419,-,LTR16C,LTR,ERVL,0,489,404,125962337,125962822 +6 - chr12 125962419 125962790 chr12,125962419,125962790,-,THE1D,LTR,ERVL-MaLR,0,381,1,125962419,125962790 +6 - chr12 125962790 125962850 chr12,125962790,125962850,-,LTR16C,LTR,ERVL,-86,403,351,125962704,125963200 +6 - chr12 125962850 125963099 chr12,125962850,125963099,+,AluSx1,SINE,Alu,52,295,-17,125962799,125963116 -6 + chr12 125963099 125963427 chr12,125963099,125963427,-,LTR16C,LTR,ERVL,-139,350,13,125962960,125963439 +6 - chr12 125963767 125963884 chr12,125963767,125963884,+,L2c,LINE,L2,3038,3162,-225,125960730,125964109 -6 + chr12 125963931 125964047 chr12,125963931,125964047,+,L2,LINE,L2,2741,2866,-553,125961191,125964600 -6 + chr12 125964073 125964193 chr12,125964073,125964193,+,(AC)n,Simple_repeat,Simple_repeat,1,120,0,125964073,125964193 -6 + chr12 125964284 125964409 chr12,125964284,125964409,+,L2c,LINE,L2,3205,3339,-36,125961080,125964445 -6 + chr12 125964648 125965471 chr12,125964648,125965471,+,L1PA8,LINE,L1,5350,6170,-2,125959299,125965473 -6 + chr12 125965747 125966476 chr12,125965747,125966476,-,L1MC5a,LINE,L1,-8,2769,2032,125965739,125968507 +6 - chr12 125966693 125966894 chr12,125966693,125966894,+,MIRb,SINE,MIR,38,249,-19,125966656,125966913 -6 + chr12 125967226 125967342 chr12,125967226,125967358,+,AluY,SINE,Alu,1,132,-179,125967226,125967537 -2 + chr12 125969811 125969996 chr12,125969802,125970115,+,MLT1J2,LTR,ERVL-MaLR,113,444,0,125969690,125970115 -3 + chr12 125985609 125985750 chr12,125985437,125985824,+,MLT1B,LTR,ERVL-MaLR,1,390,0,125985437,125985824 +3 + chr12 126032995 126033295 chr12,126031975,126033734,+,HERVK22-int,LTR,ERVK,3188,5335,-1502,126028788,126035236 +1 + chr12 126043319 126043431 chr12,126043319,126043431,-,MLT1H,LTR,ERVL-MaLR,-381,168,55,126042938,126043485 -6 - chr12 126095992 126096052 chr12,126095934,126096052,-,MLT1J2,LTR,ERVL-MaLR,-312,136,23,126095622,126096074 -1 - chr12 126100689 126100769 chr12,126100619,126100769,+,L2,LINE,L2,2260,2397,-1022,126098360,126101791 +2 + chr12 126130246 126130865 chr12,126130246,126132563,-,L1PA15,LINE,L1,-1,6691,4343,126130245,126136905 +1 - chr12 126360857 126361065 chr12,126360857,126361095,+,LTR33A,LTR,ERVL,240,508,-12,126360618,126361107 +5 + chr12 126400958 126401060 chr12,126400958,126401060,-,MIR3,SINE,MIR,-25,183,82,126400933,126401141 +6 - chr12 126401264 126401293 chr12,126401264,126401293,+,(TGG)n,Simple_repeat,Simple_repeat,1,29,0,126401264,126401293 -6 + chr12 126433875 126433896 chr12,126433812,126433896,-,MIR3,SINE,MIR,-9,199,112,126433803,126434007 -2 - chr12 126442966 126443027 chr12,126442950,126443503,-,MER41D,LTR,ERV1,0,557,2,126442950,126443504 -3 - chr12 126444881 126444973 chr12,126444780,126444973,+,LTR73,LTR,ERV1,2,203,-369,126444779,126445342 +1 + chr12 126458892 126458974 chr12,126458821,126458974,-,MIR,SINE,MIR,-61,201,45,126458760,126459018 -2 - chr12 126462718 126462744 chr12,126462623,126462744,-,MIRb,SINE,MIR,-139,129,3,126462484,126462746 -2 - chr12 126468909 126469107 chr12,126468909,126469192,+,MIRb,SINE,MIR,1,262,-6,126468909,126469198 +4 + chr12 126470661 126470815 chr12,126470644,126470971,+,L1MEg,LINE,L1,159,460,-5782,126470486,126476753 +3 + chr12 126472609 126472790 chr12,126472609,126472812,-,MLT1G3,LTR,ERVL-MaLR,-383,208,7,126472226,126472818 -5 - chr12 126663904 126664044 chr12,126663904,126664044,+,MLT1L,LTR,ERVL-MaLR,177,323,-287,126663728,126664331 -6 + chr12 126665445 126665471 chr12,126665291,126665471,-,MIRc,SINE,MIR,-64,198,18,126665227,126665488 +4 - chr12 126676084 126676213 chr12,126676084,126676213,-,MIR,SINE,MIR,-12,250,110,126676072,126676322 +6 - chr12 126677264 126677286 chr12,126677264,126677286,+,(TTTA)n,Simple_repeat,Simple_repeat,1,22,0,126677264,126677286 +6 + chr12 126677306 126677736 chr12,126677306,126677736,-,LTR16B1,LTR,ERVL,-2,478,53,126677304,126677788 -6 - chr12 126677737 126677806 chr12,126677737,126679915,-,ERV3-16A3_I-int,LTR,ERVL,-29,5197,3013,126677708,126682927 -5 - chr12 126690035 126690066 chr12,126689937,126690066,-,MIRc,SINE,MIR,-66,202,71,126689871,126690136 +4 - chr12 126695527 126695654 chr12,126695527,126695654,+,MLT1K,LTR,ERVL-MaLR,460,580,-15,126695068,126695669 +6 + chr12 126695685 126695832 chr12,126695685,126695936,+,LTR33,LTR,ERVL,2,285,-230,126695684,126696166 +5 + chr12 126729787 126729966 chr12,126729754,126729974,-,L2a,LINE,L2,-558,2861,2640,126729196,126732613 +5 - chr12 126730763 126730803 chr12,126730541,126730822,-,L4_B_Mam,LINE,RTE-X,-56,5082,4600,126730485,126735421 +3 - chr12 126735220 126735326 chr12,126735220,126735326,+,L2,LINE,L2,1967,2079,-1340,126733254,126736666 -6 + chr12 126735364 126735398 chr12,126735364,126735482,-,Charlie1b,DNA,hAT-Charlie,-5,518,390,126735359,126735871 +1 - chr12 126737007 126737145 chr12,126736798,126737145,-,MLT1K,LTR,ERVL-MaLR,-239,356,11,126736559,126737155 -1 - chr12 126736798 126736831 chr12,126736798,126737145,-,MLT1K,LTR,ERVL-MaLR,-239,356,11,126736559,126737155 +1 - chr12 126745326 126745408 chr12,126745326,126745408,-,L1MD3,LINE,L1,-1,7994,7914,126745325,126753321 -5 - chr12 126745508 126745632 chr12,126745508,126745632,+,MIRb,SINE,MIR,14,153,-115,126745495,126745747 +5 + chr12 126746071 126746252 chr12,126746071,126746434,-,MER113,DNA,hAT-Charlie,-36,485,120,126746035,126746553 -5 - chr12 126746261 126746332 chr12,126746071,126746434,-,MER113,DNA,hAT-Charlie,-36,485,120,126746035,126746553 +5 - chr12 126752164 126752253 chr12,126752154,126752253,+,L1ME5,LINE,L1,6090,6189,-5,126746065,126752258 -5 + chr12 126772157 126772411 chr12,126772157,126772431,-,LTR12F,LTR,ERV1,-13,506,223,126772144,126772653 +1 - chr12 126922707 126922771 chr12,126922544,126922771,-,MIRb,SINE,MIR,-8,260,27,126922536,126922797 +4 - chr12 127031983 127032066 chr12,127031983,127032095,+,MIR3,SINE,MIR,50,164,-44,127031934,127032139 -2 + chr12 127145072 127145236 chr12,127145024,127145236,+,L2a,LINE,L2,3167,3400,-26,127141858,127145262 -5 + chr12 127147149 127147265 chr12,127147059,127147265,+,AluJo,SINE,Alu,126,312,0,127146934,127147265 +1 + chr12 127147444 127147640 chr12,127147444,127147640,+,L2,LINE,L2,1568,1767,-1652,127145877,127149292 +6 + chr12 127147650 127148310 chr12,127147650,127148310,-,MER4CL34,LTR,ERV1,0,765,1,127147650,127148310 -6 - chr12 127148323 127148719 chr12,127148323,127148719,+,MER57D,LTR,ERV1,8,401,-10,127148316,127148729 +6 + chr12 127149628 127149657 chr12,127149628,127149657,+,(TGTATT)n,Simple_repeat,Simple_repeat,1,32,0,127149628,127149657 +6 + chr12 127150029 127150065 chr12,127150029,127150065,+,A-rich,Low_complexity,Low_complexity,1,36,0,127150029,127150065 +6 + chr12 127274467 127274521 chr12,127274452,127274562,+,L2b,LINE,L2,3260,3370,-5,127271193,127274567 -5 + chr12 127339969 127340072 chr12,127339840,127340119,-,L3b,LINE,CR1,-199,3900,3622,127339641,127343740 +1 - chr12 127372243 127372295 chr12,127371782,127372295,+,L2,LINE,L2,2530,3080,-339,127369253,127372634 +1 + chr12 127372330 127372389 chr12,127372330,127372389,-,L2b,LINE,L2,-2,3373,3315,127372328,127375703 -6 - chr12 127372419 127372463 chr12,127372419,127372463,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,127372419,127372463 +6 + chr12 127372551 127372669 chr12,127372551,127372671,+,A-rich,Low_complexity,Low_complexity,1,123,0,127372551,127372671 +5 + chr12 127462507 127462610 chr12,127462281,127462610,-,MLT1D,LTR,ERVL-MaLR,-1,504,161,127462280,127462770 -1 - chr12 127462796 127463027 chr12,127462796,127463027,+,MIR,SINE,MIR,2,259,-3,127462795,127463030 +6 + chr12 127463143 127463179 chr12,127463143,127463179,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,36,0,127463143,127463179 +6 + chr12 127598189 127598291 chr12,127598189,127598291,+,MER102b,DNA,hAT-Charlie,1,104,-237,127598189,127598528 +6 + chr12 127598291 127598446 chr12,127598291,127598446,+,L1PA8,LINE,L1,6016,6169,-3,127592276,127598449 +6 + chr12 127598446 127598618 chr12,127598446,127598630,+,MER102b,DNA,hAT-Charlie,87,266,-65,127598360,127598695 +4 + chr12 127635944 127636119 chr12,127635504,127636140,-,MER77B,LTR,ERVL,0,700,32,127635504,127636171 +1 - chr12 127793527 127793578 chr12,127793353,127793606,+,AluY,SINE,Alu,59,306,-5,127793295,127793611 -5 + chr12 127825938 127826049 chr12,127825689,127826049,+,MLT1A0,LTR,ERVL-MaLR,1,404,-4,127825689,127826053 -5 + chr12 127893877 127893961 chr12,127893877,127894182,-,ERVL-E-int,LTR,ERVL,-603,5064,4760,127893274,127898941 -4 - chr12 127897549 127897609 chr12,127897549,127897609,+,(TG)n,Simple_repeat,Simple_repeat,1,61,0,127897549,127897609 +6 + chr12 127897823 127897917 chr12,127897823,127897917,+,L1M5,LINE,L1,5569,5666,-458,127892255,127898375 +6 + chr12 127897934 127898137 chr12,127897934,127898137,+,MLT1K,LTR,ERVL-MaLR,13,224,-371,127897922,127898508 +6 + chr12 127898343 127898463 chr12,127898343,127898463,+,L2a,LINE,L2,3288,3421,-5,127895056,127898468 +6 + chr12 127898474 127898614 chr12,127898474,127898614,+,MLT1K,LTR,ERVL-MaLR,431,558,-37,127898044,127898651 +6 + chr12 127944718 127944736 chr12,127944644,127944736,-,MIR,SINE,MIR,-51,217,114,127944593,127944849 -2 - chr12 127948934 127948958 chr12,127948934,127949060,+,MIR3,SINE,MIR,16,155,-53,127948919,127949113 +4 + chr12 127950097 127950334 chr12,127950097,127950334,+,MLT1J,LTR,ERVL-MaLR,230,448,-64,127949868,127950398 +1 + chr12 127950108 127950160 chr12,127950097,127950334,+,MLT1J,LTR,ERVL-MaLR,230,448,-64,127949868,127950398 -1 + chr12 127950718 127951099 chr12,127950718,127951099,-,L1PA8,LINE,L1,-3,6169,5793,127950715,127956891 -6 - chr12 128025893 128026199 chr12,128025893,128026233,-,LTR8A,LTR,ERV1,0,727,383,128025893,128026615 +2 - chr12 128117928 128117967 chr12,128117928,128117967,+,(TCTGC)n,Simple_repeat,Simple_repeat,1,39,0,128117928,128117967 -6 + chr12 128118217 128118228 chr12,128118044,128118228,-,MLT1H1,LTR,ERVL-MaLR,-330,225,62,128117714,128118289 -1 - chr12 128118044 128118132 chr12,128118044,128118228,-,MLT1H1,LTR,ERVL-MaLR,-330,225,62,128117714,128118289 +1 - chr12 128118253 128118461 chr12,128118253,128118461,+,MIR,SINE,MIR,13,239,-23,128118241,128118484 +6 + chr12 128121244 128121366 chr12,128121244,128121366,-,MIR,SINE,MIR,-62,146,20,128121182,128121385 -6 - chr12 128121937 128121952 chr12,128121937,128121979,+,(TATTTTG)n,Simple_repeat,Simple_repeat,1,43,0,128121937,128121979 +5 + chr12 128187939 128188035 chr12,128187939,128188035,+,(TA)n,Simple_repeat,Simple_repeat,1,97,0,128187939,128188035 -5 + chr12 128288159 128288357 chr12,128288055,128288357,-,AluSp,SINE,Alu,-10,303,1,128288045,128288357 -1 - chr12 128288965 128289056 chr12,128288965,128289093,+,(CACATT)n,Simple_repeat,Simple_repeat,1,135,0,128288965,128289093 +5 + chr12 128399978 128400035 chr12,128399699,128400035,+,MER58B,DNA,hAT-Charlie,1,340,-1,128399699,128400036 +1 + chr12 128813186 128813316 chr12,128813185,128813316,-,AluJb,SINE,Alu,-12,300,175,128813173,128813490 +5 - chr12 128813450 128813693 chr12,128813450,128813693,+,L3,LINE,CR1,3702,3960,-139,128809749,128813832 -6 + chr12 128813762 128813955 chr12,128813762,128813955,+,L1ME1,LINE,L1,5998,6189,-255,128807765,128814210 -6 + chr12 128814585 128814709 chr12,128814585,128814709,+,MIRb,SINE,MIR,139,260,-8,128814447,128814717 -6 + chr12 128826836 128826945 chr12,128826648,128826945,+,AluSz,SINE,Alu,6,304,-8,128826643,128826953 +1 + chr12 128827253 128827491 chr12,128827253,128827491,+,L1MB8,LINE,L1,5879,6179,0,128821375,128827491 +6 + chr12 128827512 128827579 chr12,128827512,128827588,+,MER102c,DNA,hAT-Charlie,81,152,-179,128827432,128827767 +5 + chr12 129109629 129109833 chr12,129109479,129109833,+,THE1A,LTR,ERVL-MaLR,1,355,0,129109479,129109833 +1 + chr12 129109948 129110240 chr12,129109948,129110240,+,LTR16B1,LTR,ERVL,145,445,-35,129109804,129110275 +6 + chr12 129110274 129110414 chr12,129110274,129110414,+,MamTip2,DNA,hAT-Tip100,38,173,-132,129110237,129110546 +6 + chr12 129110461 129110587 chr12,129110461,129110587,-,L1ME3B,LINE,L1,-11,6231,6090,129110450,129116676 -6 - chr12 129111228 129111432 chr12,129111228,129111432,+,MLT1C,LTR,ERVL-MaLR,244,459,-8,129110985,129111440 +6 + chr12 129113067 129113294 chr12,129113067,129113372,+,LOR1b,LTR,ERV1,115,461,0,129112953,129113372 +5 + chr12 129210037 129210141 chr12,129209944,129210141,-,MIR,SINE,MIR,-30,232,24,129209914,129210164 -2 - chr12 129211009 129211048 chr12,129211009,129211056,-,MIRc,SINE,MIR,-120,148,104,129210889,129211159 -4 - chr12 129262412 129262726 chr12,129262412,129262726,-,MER102a,DNA,hAT-Charlie,0,330,3,129262412,129262728 -6 - chr12 129521613 129521819 chr12,129521613,129521835,-,L1ME1,LINE,L1,-227,5937,5707,129521386,129527541 +2 - chr12 129681427 129681597 chr12,129681233,129681779,-,MLT1H1,LTR,ERVL-MaLR,-8,547,1,129681225,129681779 +5 - chr12 129683023 129683068 chr12,129683023,129683097,+,L2c,LINE,L2,3302,3386,-1,129679722,129683098 -2 + chr12 129839990 129840166 chr12,129839990,129840166,-,Charlie7a,DNA,hAT-Charlie,-25,247,57,129839965,129840222 +6 - chr12 129852261 129852572 chr12,129852261,129852572,+,AluJb,SINE,Alu,1,311,-1,129852261,129852573 -6 + chr12 129852722 129852822 chr12,129852722,129852822,+,L1ME3B,LINE,L1,6100,6201,-41,129846623,129852863 -6 + chr12 129854687 129854879 chr12,129854687,129854879,-,MIR,SINE,MIR,-71,197,2,129854616,129854880 +6 - chr12 130033454 130033950 chr12,130033291,130033950,-,L3,LINE,CR1,-592,3507,2808,130032699,130036757 +5 - chr12 130033969 130034429 chr12,130033969,130034429,-,MLT1K,LTR,ERVL-MaLR,-2,593,120,130033967,130034548 +6 - chr12 130034515 130034629 chr12,130034515,130034629,-,L3,LINE,CR1,-1315,2784,2671,130033200,130037299 +6 - chr12 130035630 130036103 chr12,130035630,130036103,+,Tigger7,DNA,TcMar-Tigger,39,521,-1970,130035592,130038073 -6 + chr12 130036102 130036182 chr12,130036102,130036182,+,Tigger7,DNA,TcMar-Tigger,2400,2479,-12,130033703,130036194 -6 + chr12 130036410 130036719 chr12,130036410,130036719,+,AluSg,SINE,Alu,1,310,0,130036410,130036719 -6 + chr12 130043919 130043936 chr12,130043855,130043936,+,L2b,LINE,L2,3016,3106,-269,130040840,130044205 -4 + chr12 130043955 130044196 chr12,130043955,130044196,+,Charlie8,DNA,hAT-Charlie,19,266,-2162,130043937,130046358 -6 + chr12 130044290 130044492 chr12,130044290,130044492,+,L2b,LINE,L2,3133,3367,-8,130041158,130044500 -6 + chr12 130047158 130047209 chr12,130047158,130047462,+,AluY,SINE,Alu,1,307,-4,130047158,130047466 +4 + chr12 130048102 130048168 chr12,130048034,130048168,+,MER119,DNA,hAT-Charlie,448,583,0,130047587,130048168 +2 + chr12 130070325 130070374 chr12,130069857,130070374,-,MLT1L,LTR,ERVL-MaLR,-34,576,46,130069823,130070419 -1 - chr12 130070914 130071061 chr12,130070914,130071061,-,AluSx,SINE,Alu,-12,300,154,130070902,130071214 -6 - chr12 130071061 130071104 chr12,130071061,130071104,-,AluYh3,SINE,Alu,-212,99,57,130070849,130071160 -6 - chr12 130071104 130071295 chr12,130071104,130071295,-,AluSz,SINE,Alu,-121,191,2,130070983,130071296 -6 - chr12 130072287 130072371 chr12,130072266,130072371,-,L1MB1,LINE,L1,-13,6176,6073,130072253,130078443 -2 - chr12 130072666 130072685 chr12,130072666,130072925,-,MIRb,SINE,MIR,0,268,5,130072666,130072929 -5 - chr12 130121982 130122072 chr12,130121982,130122072,+,MIR,SINE,MIR,102,191,-71,130121881,130122143 -6 + chr12 130122557 130122906 chr12,130122557,130122906,-,MLT1A0,LTR,ERVL-MaLR,-1,364,1,130122556,130122906 +6 - chr12 130138966 130139235 chr12,130138966,130139235,-,MLT2C1,LTR,ERVL,-47,350,58,130138919,130139292 -6 - chr12 130140656 130140768 chr12,130140656,130141036,+,L1ME4a,LINE,L1,5721,6121,-3,130134936,130141039 +5 + chr12 130144315 130144391 chr12,130144302,130144391,-,MER33,DNA,hAT-Charlie,-83,241,150,130144219,130144540 +5 - chr12 130144954 130144988 chr12,130144951,130144988,+,(TCTT)n,Simple_repeat,Simple_repeat,1,37,0,130144951,130144988 +1 + chr12 130144951 130144988 chr12,130144951,130144988,+,(TCTT)n,Simple_repeat,Simple_repeat,1,37,0,130144951,130144988 -1 + chr12 130145190 130145310 chr12,130145190,130145310,+,L2a,LINE,L2,3034,3156,-231,130142157,130145541 +6 + chr12 130145190 130145310 chr12,130145190,130145310,+,L2a,LINE,L2,3034,3156,-231,130142157,130145541 -6 + chr12 130145518 130145691 chr12,130145518,130145711,-,MIR,SINE,MIR,-31,237,41,130145487,130145751 -5 - chr12 130145518 130145711 chr12,130145518,130145711,-,MIR,SINE,MIR,-31,237,41,130145487,130145751 +5 - chr12 130145861 130146095 chr12,130145861,130146095,+,L2a,LINE,L2,3081,3329,-97,130142781,130146192 -6 + chr12 130146099 130146271 chr12,130146099,130146271,+,AluSx,SINE,Alu,136,308,-4,130145964,130146275 -6 + chr12 130146272 130146374 chr12,130146272,130146374,+,L2a,LINE,L2,3321,3426,0,130142952,130146374 -6 + chr12 130146607 130146809 chr12,130146607,130146809,-,MER58A,DNA,hAT-Charlie,-5,219,2,130146602,130146810 +6 - chr12 130147433 130147738 chr12,130147433,130147738,-,AluSq,SINE,Alu,-16,297,1,130147417,130147738 +6 - chr12 130148681 130149099 chr12,130148681,130149099,+,MLT1L,LTR,ERVL-MaLR,208,602,-8,130148474,130149107 -6 + chr12 130149397 130149489 chr12,130149397,130149489,+,MLT1K,LTR,ERVL-MaLR,19,106,-489,130149379,130149978 -6 + chr12 130149518 130149612 chr12,130149518,130149612,+,MLT1K,LTR,ERVL-MaLR,169,262,-333,130149350,130149945 -6 + chr12 130150075 130150300 chr12,130150075,130150300,+,MLT1K,LTR,ERVL-MaLR,161,413,-182,130149915,130150482 -6 + chr12 130150376 130150443 chr12,130150376,130150443,+,MLT1K,LTR,ERVL-MaLR,527,595,0,130149850,130150443 -6 + chr12 130150496 130150617 chr12,130150496,130150617,-,MIR3,SINE,MIR,-35,233,87,130150461,130150703 +6 - chr12 130150635 130150707 chr12,130150635,130150707,-,MER91B,DNA,hAT-Tip100,-25,171,91,130150610,130150797 +6 - chr12 130150716 130150872 chr12,130150716,130150872,-,MER91A,DNA,hAT-Tip100,-25,171,16,130150691,130150887 +6 - chr12 130150954 130151307 chr12,130150954,130151307,-,MLT2C1,LTR,ERVL,-3,394,15,130150951,130151321 +6 - chr12 130151389 130151470 chr12,130151389,130151470,+,MER94,DNA,hAT-Blackjack,23,107,-27,130151367,130151497 -6 + chr12 130151471 130151793 chr12,130151471,130151793,+,L1PA11,LINE,L1,5564,5887,-287,130145908,130152080 -5 + chr12 130152254 130152394 chr12,130152254,130152394,+,LTR16B1,LTR,ERVL,4,149,-331,130152251,130152725 -6 + chr12 130152568 130152724 chr12,130152568,130152724,+,MIRb,SINE,MIR,46,231,-37,130152523,130152761 -6 + chr12 130152745 130153143 chr12,130152745,130153143,-,MLT1D,LTR,ERVL-MaLR,-35,470,23,130152710,130153165 +6 - chr12 130153480 130153598 chr12,130153480,130153798,+,AluSc,SINE,Alu,1,309,0,130153480,130153798 -2 + chr12 130154473 130154622 chr12,130153892,130154622,+,L2a,LINE,L2,2645,3377,-49,130151248,130154671 -4 + chr12 130249679 130249963 chr12,130249452,130249963,+,MER66A,LTR,ERV1,1,478,0,130249452,130249963 +1 + chr12 130249963 130250018 chr12,130249963,130250080,+,L1MEd,LINE,L1,979,1094,-5992,130248985,130256072 +4 + chr12 130266355 130266717 chr12,130266355,130266717,+,L1PA16,LINE,L1,5789,6157,-9,130260567,130266726 +6 + chr12 130425061 130425110 chr12,130425061,130425110,+,(GAGGCA)n,Simple_repeat,Simple_repeat,1,51,0,130425061,130425110 +6 + chr12 130426065 130426262 chr12,130426065,130426262,-,MER102a,DNA,hAT-Charlie,0,330,121,130426065,130426382 -6 - chr12 130426275 130426577 chr12,130426275,130426577,-,AluSc,SINE,Alu,-8,301,1,130426267,130426577 -6 - chr12 130428250 130428269 chr12,130428250,130428269,+,(CTC)n,Simple_repeat,Simple_repeat,1,19,0,130428250,130428269 +6 + chr12 130428815 130429116 chr12,130428815,130429116,+,AluY,SINE,Alu,1,301,-10,130428815,130429126 +6 + chr12 130430117 130430197 chr12,130430117,130430197,-,MIR3,SINE,MIR,-94,114,37,130430023,130430233 -6 - chr12 130430589 130430625 chr12,130430589,130430625,+,L1MA9,LINE,L1,6182,6217,-95,130424408,130430720 +6 + chr12 130430625 130430661 chr12,130430625,130430930,-,AluSx1,SINE,Alu,-7,305,1,130430618,130430930 -5 - chr12 130465008 130465132 chr12,130464859,130465132,+,ORSL,DNA,hAT-Tip100,1,275,0,130464859,130465132 -5 + chr12 130465385 130465421 chr12,130465385,130465421,+,(ACAGGC)n,Simple_repeat,Simple_repeat,1,37,0,130465385,130465421 -6 + chr12 130465536 130465716 chr12,130465536,130465716,+,MIR,SINE,MIR,37,222,-40,130465500,130465756 -6 + chr12 130465935 130466061 chr12,130465935,130466061,+,MIR,SINE,MIR,4,130,-132,130465932,130466193 -6 + chr12 130651381 130651479 chr12,130651381,130651515,-,MIR,SINE,MIR,-9,253,123,130651372,130651637 -4 - chr12 130660034 130660181 chr12,130660010,130660181,-,AluJb,SINE,Alu,-14,298,124,130659996,130660304 -2 - chr12 130667320 130667481 chr12,130667320,130667509,-,LTR33,LTR,ERVL,-13,502,316,130667307,130667824 -1 - chr12 130667599 130667682 chr12,130667599,130668208,+,MER21C,LTR,ERVL,205,818,-120,130667395,130668328 +4 + chr12 130668037 130668208 chr12,130667599,130668208,+,MER21C,LTR,ERVL,205,818,-120,130667395,130668328 +2 + chr12 130668351 130668373 chr12,130668299,130668373,-,MIRc,SINE,MIR,-76,192,114,130668223,130668486 -2 - chr12 130668510 130668546 chr12,130668510,130669104,-,LTR18B,LTR,ERVL,-1,613,1,130668509,130669104 -4 - chr12 130810606 130810856 chr12,130810045,130810856,+,L1MC5,LINE,L1,7629,8438,-866,130802417,130811722 +5 + chr12 130810821 130810856 chr12,130810045,130810856,+,L1MC5,LINE,L1,7629,8438,-866,130802417,130811722 -5 + chr12 130810870 130810887 chr12,130810870,130810997,-,L1MC5,LINE,L1,-478,8826,8698,130810392,130819694 -4 - chr12 130810870 130810958 chr12,130810870,130810997,-,L1MC5,LINE,L1,-478,8826,8698,130810392,130819694 +2 - chr12 130812134 130812356 chr12,130811913,130812356,+,L1MC5,LINE,L1,8661,9153,-151,130803253,130812507 +2 + chr12 130956832 130956896 chr12,130956832,130956896,+,(CA)n,Simple_repeat,Simple_repeat,1,64,0,130956832,130956896 -6 + chr12 130956935 130957596 chr12,130956935,130957596,+,(AC)n,Simple_repeat,Simple_repeat,1,667,0,130956935,130957596 -6 + chr12 130957892 130957917 chr12,130957892,130957917,+,(CTC)n,Simple_repeat,Simple_repeat,1,25,0,130957892,130957917 -6 + chr12 130957941 130957975 chr12,130957941,130957975,+,(TTCC)n,Simple_repeat,Simple_repeat,1,35,0,130957941,130957975 -6 + chr12 130962596 130962633 chr12,130962596,130962633,+,(TTTTGCA)n,Simple_repeat,Simple_repeat,1,37,0,130962596,130962633 +6 + chr12 130976786 130977032 chr12,130976739,130977032,+,AluJo,SINE,Alu,1,289,-23,130976739,130977055 +1 + chr12 130977034 130977214 chr12,130977034,130977214,+,MER102a,DNA,hAT-Charlie,73,260,-71,130976962,130977285 +6 + chr12 130977925 130978106 chr12,130977925,130978106,+,MIR,SINE,MIR,6,188,-74,130977920,130978180 +6 + chr12 130978165 130978376 chr12,130978165,130978376,-,L1M2,LINE,L1,-870,5273,5075,130977295,130983450 -6 - chr12 130980667 130980697 chr12,130980407,130980697,-,AluSx,SINE,Alu,-22,290,1,130980385,130980697 +5 - chr12 130980709 130980824 chr12,130980709,130980824,+,MamRep4096,DNA,hAT-Tip100,59,175,-251,130980651,130981075 -6 + chr12 130981086 130981182 chr12,130981086,130981182,+,L1M5,LINE,L1,5591,5687,-437,130975496,130981619 -6 + chr12 130988502 130989055 chr12,130988502,130989055,-,MLT1K,LTR,ERVL-MaLR,-7,588,1,130988495,130989055 +6 - chr12 130989957 130990004 chr12,130989957,130990004,-,MamRep137,DNA,TcMar-Tigger,-305,205,159,130989652,130990162 +6 - chr12 130993959 130993976 chr12,130993959,130994096,-,MLT1L,LTR,ERVL-MaLR,-334,276,140,130993625,130994235 +1 - chr12 131022769 131023768 chr12,131022203,131023768,-,L1MC4a,LINE,L1,-506,7376,5686,131021697,131029453 +5 - chr12 131024452 131024741 chr12,131024452,131024774,+,Tigger3a,DNA,TcMar-Tigger,21,348,0,131024432,131024774 -1 + chr12 131025561 131025834 chr12,131025537,131025834,-,AluSz,SINE,Alu,-7,305,1,131025530,131025834 +5 - chr12 131026656 131026788 chr12,131026656,131026788,-,MER20,DNA,hAT-Charlie,-55,164,31,131026601,131026818 +6 - chr12 131027187 131027220 chr12,131027187,131027220,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,131027187,131027220 -6 + chr12 131027776 131027901 chr12,131027776,131027901,-,L1ME3B,LINE,L1,-21,6221,6096,131027755,131033996 +6 - chr12 131027922 131028060 chr12,131027922,131028790,-,L1ME3B,LINE,L1,-458,5715,4792,131027464,131033581 +1 - chr12 131035126 131035289 chr12,131034868,131035289,+,L2b,LINE,L2,2705,3210,-177,131032164,131035466 -4 + chr12 131210304 131210395 chr12,131210304,131210738,+,MLT1J1,LTR,ERVL-MaLR,9,424,-20,131210296,131210758 +4 + chr12 131212316 131212931 chr12,131212316,131213367,+,L1MB7,LINE,L1,4975,6044,-140,131207342,131213507 +5 + chr12 131235511 131235736 chr12,131235423,131235736,-,AluSp,SINE,Alu,0,313,1,131235423,131235736 -1 - chr12 131236727 131237036 chr12,131236727,131237036,+,AluSx,SINE,Alu,1,308,-4,131236727,131237040 +6 + chr12 131296031 131296056 chr12,131296031,131296056,+,(TCAT)n,Simple_repeat,Simple_repeat,1,25,0,131296031,131296056 +6 + chr12 131296073 131296291 chr12,131296073,131296291,-,L2a,LINE,L2,0,3426,3198,131296073,131299488 -5 - chr12 131296110 131296291 chr12,131296073,131296291,-,L2a,LINE,L2,0,3426,3198,131296073,131299488 +5 - chr12 131296295 131296457 chr12,131296295,131296457,+,MER91B,DNA,hAT-Tip100,1,177,-13,131296295,131296470 +6 + chr12 131296295 131296457 chr12,131296295,131296457,+,MER91B,DNA,hAT-Tip100,1,177,-13,131296295,131296470 -6 + chr12 131296470 131296549 chr12,131296470,131296549,-,L2,LINE,L2,-3272,147,62,131293198,131296610 -6 - chr12 131296470 131296549 chr12,131296470,131296549,-,L2,LINE,L2,-3272,147,62,131293198,131296610 +6 - chr12 131296604 131296658 chr12,131296604,131296658,+,G-rich,Low_complexity,Low_complexity,1,55,0,131296604,131296658 +6 + chr12 131296604 131296658 chr12,131296604,131296658,+,G-rich,Low_complexity,Low_complexity,1,55,0,131296604,131296658 -6 + chr12 131297427 131297540 chr12,131297427,131297540,-,MER102c,DNA,hAT-Charlie,-13,318,196,131297414,131297735 -6 - chr12 131298082 131298207 chr12,131298082,131298207,+,AluJr,SINE,Alu,1,125,-187,131298082,131298394 +6 + chr12 131367453 131367555 chr12,131367453,131367703,-,LTR33,LTR,ERVL,-235,280,22,131367218,131367724 -5 - chr12 131436447 131436570 chr12,131436207,131436570,-,THE1B,LTR,ERVL-MaLR,0,364,2,131436207,131436571 -1 - chr12 131436757 131436913 chr12,131436757,131436913,-,MLT1K,LTR,ERVL-MaLR,-411,184,11,131436346,131436923 -6 - chr12 131447337 131447496 chr12,131447284,131447496,-,MLT1K,LTR,ERVL-MaLR,-1,594,370,131447283,131447865 +5 - chr12 131453885 131453938 chr12,131453806,131454025,+,MIRb,SINE,MIR,12,257,-11,131453795,131454036 -3 + chr12 131455164 131455211 chr12,131455164,131455319,-,L2b,LINE,L2,-213,3162,3002,131454951,131458320 +2 - chr12 131479194 131479345 chr12,131479194,131479345,+,L1MD1,LINE,L1,6085,6239,-3,131473110,131479348 -6 + chr12 131479410 131479816 chr12,131479410,131479816,+,MLT1K,LTR,ERVL-MaLR,152,572,-23,131479259,131479839 -6 + chr12 131479862 131480035 chr12,131479862,131480035,+,MLT1K,LTR,ERVL-MaLR,406,590,-5,131479457,131480040 -6 + chr12 131480686 131480837 chr12,131480686,131480837,-,LTR33A_,LTR,ERVL,-355,176,8,131480331,131480844 +6 - chr12 131481638 131481707 chr12,131481638,131481707,+,(TG)n,Simple_repeat,Simple_repeat,1,70,0,131481638,131481707 -6 + chr12 131481806 131481897 chr12,131481806,131481897,+,L2a,LINE,L2,2757,2864,-555,131479050,131482452 -6 + chr12 131481973 131482083 chr12,131481973,131482083,-,MER5A1,DNA,hAT-Charlie,-5,161,48,131481968,131482130 +6 - chr12 131482398 131482520 chr12,131482398,131482520,-,MLT1N2,LTR,ERVL-MaLR,-393,169,41,131482005,131482560 +6 - chr12 131482633 131482722 chr12,131482633,131482722,+,L2a,LINE,L2,3101,3185,-241,131479533,131482963 -6 + chr12 131620178 131620268 chr12,131620092,131620268,+,MIR,SINE,MIR,23,208,-54,131620070,131620322 -5 + chr12 131620372 131620612 chr12,131620372,131620612,-,ORSL,DNA,hAT-Tip100,0,275,4,131620372,131620615 +6 - chr12 131620633 131620765 chr12,131620633,131620780,-,MLT1K,LTR,ERVL-MaLR,-268,327,174,131620365,131620953 +1 - chr12 131622912 131623100 chr12,131622912,131623100,+,MIRb,SINE,MIR,3,196,-72,131622910,131623172 -6 + chr12 131646317 131646348 chr12,131646317,131646348,+,(TCC)n,Simple_repeat,Simple_repeat,1,31,0,131646317,131646348 +6 + chr12 131662606 131662731 chr12,131662606,131662731,-,AluJr,SINE,Alu,-187,125,1,131662419,131662731 -6 - chr12 131664152 131664209 chr12,131664152,131664209,+,(TGCCC)n,Simple_repeat,Simple_repeat,1,58,0,131664152,131664209 +6 + chr12 131664264 131664346 chr12,131664264,131664346,+,L2,LINE,L2,62,147,-3272,131664203,131667618 +6 + chr12 131664356 131664518 chr12,131664356,131664518,-,MER91B,DNA,hAT-Tip100,-13,177,1,131664343,131664518 -6 - chr12 131664524 131664704 chr12,131664524,131664740,+,L2a,LINE,L2,3198,3426,0,131661327,131664740 +5 + chr12 131857420 131857433 chr12,131857281,131857433,-,L2a,LINE,L2,-1,3425,3277,131857280,131860709 -1 - chr12 131863051 131863156 chr12,131862733,131863189,-,L1MC1,LINE,L1,-160,6173,5697,131862573,131868885 -3 - chr12 131864332 131864490 chr12,131864332,131864490,+,AluJr,SINE,Alu,156,312,0,131864177,131864490 +6 + chr12 131864490 131864534 chr12,131864490,131864534,+,A-rich,Low_complexity,Low_complexity,1,47,0,131864490,131864534 +6 + chr12 131896744 131896783 chr12,131896744,131896783,+,(TTCC)n,Simple_repeat,Simple_repeat,1,41,0,131896744,131896783 +6 + chr12 131897539 131897586 chr12,131897539,131897586,+,AluJo,SINE,Alu,242,289,-23,131897298,131897609 +6 + chr12 131897643 131897915 chr12,131897643,131897915,+,AluJo,SINE,Alu,1,299,-13,131897643,131897928 +6 + chr12 131934642 131934693 chr12,131933737,131934693,-,LTR13A,LTR,ERVK,0,966,1,131933737,131934693 -1 - chr12 132100672 132100727 chr12,132100672,132100727,+,Charlie4z,DNA,hAT-Charlie,94,147,-20,132100579,132100747 -6 + chr12 132187205 132187372 chr12,132187205,132187372,+,MLT1E2-int,LTR,ERVL-MaLR,785,958,-451,132186421,132187823 -6 + chr12 132189359 132189388 chr12,132189359,132189388,+,(TGTC)n,Simple_repeat,Simple_repeat,1,30,0,132189359,132189388 -6 + chr12 132190289 132190333 chr12,132190289,132190410,-,L1M5,LINE,L1,-697,5747,5620,132189592,132196029 -4 - chr12 132190796 132190997 chr12,132190796,132191175,+,MLT1C,LTR,ERVL-MaLR,2,383,-7,132190795,132191182 +5 + chr12 132200854 132200931 chr12,132200854,132200931,+,(TGTGCA)n,Simple_repeat,Simple_repeat,1,77,0,132200854,132200931 +6 + chr12 132275566 132275598 chr12,132275566,132275598,+,(TCCC)n,Simple_repeat,Simple_repeat,1,32,0,132275566,132275598 +6 + chr12 132275605 132275668 chr12,132275605,132275668,+,MLT1K,LTR,ERVL-MaLR,525,586,-9,132275081,132275677 +6 + chr12 132277738 132277949 chr12,132277738,132277949,+,MLT1A0,LTR,ERVL-MaLR,112,331,-34,132277627,132277983 +6 + chr12 132277977 132278024 chr12,132277977,132278024,+,(GCCCCC)n,Simple_repeat,Simple_repeat,1,48,0,132277977,132278024 +6 + chr12 132279216 132279325 chr12,132279216,132279325,+,MLT1K,LTR,ERVL-MaLR,166,272,-323,132279051,132279648 +5 + chr12 132279256 132279325 chr12,132279216,132279325,+,MLT1K,LTR,ERVL-MaLR,166,272,-323,132279051,132279648 -5 + chr12 132280153 132280248 chr12,132280153,132280248,+,MLT1K,LTR,ERVL-MaLR,459,564,-31,132279695,132280279 +6 + chr12 132280153 132280248 chr12,132280153,132280248,+,MLT1K,LTR,ERVL-MaLR,459,564,-31,132279695,132280279 -6 + chr12 132280825 132280900 chr12,132280825,132280978,+,MIR,SINE,MIR,38,192,-70,132280788,132281048 +1 + chr12 132280825 132280900 chr12,132280825,132280978,+,MIR,SINE,MIR,38,192,-70,132280788,132281048 -1 + chr12 132283420 132283950 chr12,132283420,132283950,+,MER77,LTR,ERVL,1,604,0,132283420,132283950 +6 + chr12 132284063 132284327 chr12,132284063,132284327,+,(CA)n,Simple_repeat,Simple_repeat,1,265,0,132284063,132284327 +6 + chr12 132284368 132284606 chr12,132284368,132284612,-,MER113,DNA,hAT-Charlie,-4,517,274,132284364,132284885 -5 - chr12 132332288 132332432 chr12,132332288,132332594,+,AluJb,SINE,Alu,1,301,-11,132332288,132332605 +5 + chr12 132360867 132360968 chr12,132360867,132360968,+,MLT1C,LTR,ERVL-MaLR,296,401,-66,132360572,132361034 +6 + chr12 132362934 132363011 chr12,132362934,132363011,+,MIR,SINE,MIR,116,193,-69,132362819,132363080 +6 + chr12 132363107 132363346 chr12,132363107,132363346,+,L1MC2,LINE,L1,6076,6342,-2,132357032,132363348 +6 + chr12 132424977 132425208 chr12,132424977,132425320,-,MLT1I,LTR,ERVL-MaLR,0,411,2,132424977,132425321 +1 - chr12 132457160 132457395 chr12,132456995,132457395,+,MLT1D,LTR,ERVL-MaLR,38,499,-6,132456958,132457401 +1 + chr12 132459561 132459676 chr12,132459561,132459676,-,LTR16,LTR,ERVL,-263,175,63,132459298,132459738 -6 - chr12 132462242 132462585 chr12,132462184,132462585,+,MLT1L,LTR,ERVL-MaLR,3,414,-196,132462182,132462781 +1 + chr12 132552481 132552521 chr12,132552481,132552521,+,(GGAT)n,Simple_repeat,Simple_repeat,1,40,0,132552481,132552521 +6 + chr12 132552687 132552720 chr12,132552687,132552720,+,(GACG)n,Simple_repeat,Simple_repeat,1,33,0,132552687,132552720 +6 + chr12 132553762 132553891 chr12,132553762,132553891,-,MLT1D,LTR,ERVL-MaLR,-1,504,370,132553761,132554260 -6 - chr12 132554531 132554667 chr12,132554531,132554667,+,AluSz6,SINE,Alu,1,136,-176,132554531,132554843 +6 + chr12 132554667 132554947 chr12,132554667,132554962,+,AluSx,SINE,Alu,2,298,-14,132554666,132554976 +5 + chr12 132565198 132565301 chr12,132565198,132565301,-,L1ME3G,LINE,L1,-14,910,807,132565184,132566107 -6 - chr12 132565764 132566065 chr12,132565764,132566065,+,L1MB7,LINE,L1,5832,6164,-20,132559933,132566085 +6 + chr12 132566065 132566387 chr12,132566065,132566387,-,MLT1A0,LTR,ERVL-MaLR,-1,364,2,132566064,132566388 -6 - chr12 132566387 132566411 chr12,132566387,132566411,+,L1MB7,LINE,L1,6165,6184,0,132560223,132566411 +6 + chr12 132593045 132593547 chr12,132593045,132593547,-,L1MB5,LINE,L1,0,6174,5615,132593045,132599161 +6 - chr12 132865855 132865971 chr12,132865651,132865971,-,AluJb,SINE,Alu,-4,308,3,132865647,132865973 +5 - chr12 132866840 132867053 chr12,132866840,132867053,+,AluSx,SINE,Alu,83,302,-10,132866758,132867063 -6 + chr12 132867245 132867356 chr12,132867245,132867356,+,L1M6B,LINE,L1,21,130,-239,132867225,132867595 -6 + chr12 132867805 132867876 chr12,132867805,132867876,+,L1M5,LINE,L1,4487,4570,-1576,132863319,132869452 -6 + chr12 132888327 132888445 chr12,132888327,132888445,+,FLAM_C,SINE,Alu,1,132,-11,132888327,132888456 +6 + chr12 132888473 132888538 chr12,132888473,132888538,+,(AT)n,Simple_repeat,Simple_repeat,1,65,0,132888473,132888538 +6 + chr12 132888541 132888583 chr12,132888541,132889023,+,MER4D1,LTR,ERV1,1,533,-367,132888541,132889390 +5 + chr12 132911470 132911507 chr12,132911271,132911507,-,L1MEd,LINE,L1,-2922,3224,2962,132908349,132914468 -1 - chr12 132911573 132911927 chr12,132911573,132911927,-,THE1A,LTR,ERVL-MaLR,0,355,6,132911573,132911932 -6 - chr12 132911927 132912020 chr12,132911927,132912020,-,THE1B,LTR,ERVL-MaLR,-268,96,1,132911659,132912020 -6 - chr12 132912020 132912270 chr12,132912020,132912270,-,L1MEd,LINE,L1,-3548,2598,2343,132908472,132914612 -6 - chr12 132912321 132912429 chr12,132912321,132912429,-,L1MEd,LINE,L1,-4871,2232,2125,132907450,132914553 -6 - chr12 132912429 132912734 chr12,132912429,132912734,+,AluY,SINE,Alu,1,305,-6,132912429,132912740 +6 + chr12 132912734 132912977 chr12,132912734,132912977,-,L1MEd,LINE,L1,-4979,2124,1859,132907755,132914835 -6 - chr12 132912977 132913276 chr12,132912977,132913276,-,AluSp,SINE,Alu,-14,299,2,132912963,132913277 -6 - chr12 132913281 132913582 chr12,132913281,132913582,-,AluSq,SINE,Alu,-11,302,2,132913270,132913583 -6 - chr12 132913582 132913813 chr12,132913582,132913813,-,L1MEd,LINE,L1,-5245,1858,1586,132908337,132915398 -6 - chr12 132913857 132914425 chr12,132913857,132914425,-,L1M5,LINE,L1,-1127,5019,4437,132912730,132918861 -6 - chr12 132914417 132914732 chr12,132914417,132914931,-,L1MD2,LINE,L1,-325,6034,5481,132914092,132920411 -5 - chr12 133036839 133037129 chr12,133036839,133037129,+,AluSx1,SINE,Alu,1,289,-23,133036839,133037152 -1 + chr12 133073516 133073665 chr12,133073366,133073665,-,AluSz,SINE,Alu,-15,297,1,133073351,133073665 +5 - chr12 133073669 133073810 chr12,133073669,133073810,-,L1PA17,LINE,L1,-3,6163,6026,133073666,133079835 +6 - chr12 133115692 133115733 chr12,133115619,133115745,-,L2b,LINE,L2,-595,2824,2698,133115024,133118442 -1 - chr13 18230503 18230639 chr13,18230490,18230639,-,MIRc,SINE,MIR,-57,211,51,18230433,18230689 -2 - chr13 18230894 18231074 chr13,18230894,18231074,-,L1PA12,LINE,L1,0,6168,5980,18230894,18237053 -6 - chr13 18550565 18550697 chr13,18550565,18551251,-,L1M4,LINE,L1,-405,6277,5592,18550160,18556842 -5 - chr13 18672915 18673096 chr13,18672915,18673096,+,MER5A,DNA,hAT-Charlie,2,189,0,18672914,18673096 +6 + chr13 18675988 18676020 chr13,18675864,18676020,-,MamSINE1,SINE,tRNA-RTE,0,290,135,18675864,18676154 -2 - chr13 18719684 18719729 chr13,18719634,18719782,+,MIR,SINE,MIR,113,262,0,18719522,18719782 -1 + chr13 18860494 18860589 chr13,18860494,18860589,+,MIRc,SINE,MIR,17,126,-142,18860478,18860731 +6 + chr13 18905439 18905576 chr13,18904497,18905945,+,REP522,Satellite,telo,1,1660,-157,18904497,18906102 +1 + chr13 18906497 18906658 chr13,18906487,18906659,-,REP522,Satellite,telo,-1082,735,560,18905405,18907218 -3 - chr13 18907747 18907810 chr13,18907747,18907882,-,L1M1,LINE,L1,-2801,4764,4621,18904946,18912502 -5 - chr13 18921889 18922022 chr13,18921842,18922022,+,MER58A,DNA,hAT-Charlie,1,220,-4,18921842,18922026 -5 + chr13 18922096 18922143 chr13,18922096,18922143,+,(TCTGCA)n,Simple_repeat,Simple_repeat,1,47,0,18922096,18922143 -6 + chr13 19012467 19012559 chr13,19012467,19012621,-,ORSL-2b,DNA,hAT-Tip100,-16,492,347,19012451,19012967 -5 - chr13 19028575 19028701 chr13,19028555,19028854,-,Tigger1,DNA,TcMar-Tigger,-374,2044,1751,19028181,19030604 -5 - chr13 19263251 19263283 chr13,19263251,19263684,-,L2c,LINE,L2,0,3387,2915,19263251,19266598 +2 - chr13 19346469 19346582 chr13,19346469,19346582,-,MIRc,SINE,MIR,-88,180,45,19346381,19346626 -6 - chr13 19408167 19408182 chr13,19408167,19408182,+,(TTG)n,Simple_repeat,Simple_repeat,1,15,0,19408167,19408182 -6 + chr13 19408182 19408493 chr13,19408182,19408493,-,AluSq2,SINE,Alu,-3,310,1,19408179,19408493 +6 - chr13 19408493 19408504 chr13,19408493,19408504,+,(TTG)n,Simple_repeat,Simple_repeat,1,11,0,19408493,19408504 -6 + chr13 19408504 19408793 chr13,19408504,19408793,-,AluJr,SINE,Alu,-27,285,1,19408477,19408793 +6 - chr13 19408926 19408936 chr13,19408926,19409426,+,LTR22C,LTR,ERVK,1,509,0,19408926,19409426 -2 + chr13 19409366 19409426 chr13,19408926,19409426,+,LTR22C,LTR,ERVK,1,509,0,19408926,19409426 -4 + chr13 19588196 19588306 chr13,19588196,19588306,-,L2a,LINE,L2,-1,3425,3309,19588195,19591614 -6 - chr13 19588317 19588350 chr13,19588317,19588474,+,L2a,LINE,L2,3267,3425,-1,19585051,19588475 +5 + chr13 19841827 19842008 chr13,19841817,19842114,-,AluY,SINE,Alu,-13,298,1,19841804,19842114 -1 - chr13 19843560 19843672 chr13,19843560,19843849,+,AluSz,SINE,Alu,7,296,-16,19843554,19843865 +5 + chr13 20092632 20092774 chr13,20092627,20092774,-,MIRc,SINE,MIR,-88,174,6,20092539,20092779 -1 - chr13 20092825 20092956 chr13,20092825,20092956,+,HAL1,LINE,L1,52,200,-2307,20092774,20095263 +6 + chr13 20093040 20093099 chr13,20093040,20093099,+,L2,LINE,L2,1411,1477,-1942,20091630,20095041 +6 + chr13 20093099 20094144 chr13,20093099,20095408,-,Cheshire,DNA,hAT-Charlie,0,2420,2,20093099,20095409 -5 - chr13 20181531 20181721 chr13,20181219,20181721,-,L1MB3,LINE,L1,-7,6176,5675,20181212,20187395 -1 - chr13 20195148 20195195 chr13,20195148,20195195,+,(GTGAG)n,Simple_repeat,Simple_repeat,1,48,0,20195148,20195195 +6 + chr13 20564724 20564822 chr13,20564724,20564822,-,MLT2D,LTR,ERVL,0,414,325,20564724,20565146 +5 - chr13 20564822 20564908 chr13,20564822,20564908,+,LTR10F,LTR,ERV1,1,87,-424,20564822,20565332 -6 + chr13 20564908 20565008 chr13,20564908,20565206,+,AluY,SINE,Alu,1,309,-2,20564908,20565208 -2 + chr13 20565501 20565550 chr13,20565206,20565620,+,LTR10F,LTR,ERV1,88,509,-2,20565119,20565622 -3 + chr13 20699307 20699513 chr13,20699181,20699513,+,L1MEg,LINE,L1,3292,3677,-3638,20695890,20703151 -5 + chr13 20699513 20699847 chr13,20699513,20699847,+,Tigger3a,DNA,TcMar-Tigger,1,348,0,20699513,20699847 -6 + chr13 20699847 20699890 chr13,20699847,20699890,+,L1MEg,LINE,L1,3561,3601,-3853,20696287,20703743 -6 + chr13 20699901 20700207 chr13,20699901,20700207,+,AluSx,SINE,Alu,1,303,-9,20699901,20700216 -6 + chr13 20700260 20701024 chr13,20700260,20701024,-,L2,LINE,L2,-1796,1623,678,20698464,20701701 +6 - chr13 20701054 20701356 chr13,20701054,20701356,-,AluSg,SINE,Alu,-9,301,1,20701045,20701356 +6 - chr13 20702937 20703058 chr13,20702937,20703058,-,L3,LINE,CR1,-139,3960,3828,20702798,20706885 +6 - chr13 20703649 20703717 chr13,20703649,20703717,+,(GCACGC)n,Simple_repeat,Simple_repeat,1,71,0,20703649,20703717 -6 + chr13 20712431 20712598 chr13,20712306,20712598,+,AluSx,SINE,Alu,1,291,-21,20712306,20712619 +1 + chr13 20712877 20713017 chr13,20712877,20713017,+,(TTTC)n,Simple_repeat,Simple_repeat,1,142,0,20712877,20713017 +6 + chr13 20768876 20768948 chr13,20768867,20768948,-,MER74A,LTR,ERVL,-55,503,425,20768812,20769372 +5 - chr13 20769230 20769375 chr13,20769230,20770097,+,L1M4c,LINE,L1,266,1162,-5222,20768965,20775319 -1 + chr13 21005677 21005701 chr13,21005677,21005826,+,FRAM,SINE,Alu,21,169,-7,21005657,21005833 +4 + chr13 21287833 21287955 chr13,21287833,21287955,+,L1M3,LINE,L1,4253,4377,-1763,21283581,21289718 +6 + chr13 21294733 21294754 chr13,21294443,21294754,-,AluSz,SINE,Alu,0,312,1,21294443,21294754 -2 - chr13 21303515 21303538 chr13,21303427,21303538,-,L2a,LINE,L2,-3,3423,3303,21303424,21306840 +5 - chr13 21312151 21312365 chr13,21311504,21314276,+,ERVL-E-int,LTR,ERVL,1160,4123,-1544,21310345,21315820 -3 + chr13 21312452 21312555 chr13,21311504,21314276,+,ERVL-E-int,LTR,ERVL,1160,4123,-1544,21310345,21315820 -3 + chr13 21323269 21323302 chr13,21323267,21323302,+,(ATC)n,Simple_repeat,Simple_repeat,1,35,0,21323267,21323302 -5 + chr13 21325625 21325641 chr13,21325600,21325641,+,(TATACA)n,Simple_repeat,Simple_repeat,1,45,0,21325600,21325641 -5 + chr13 21325683 21325815 chr13,21325683,21326029,-,MLT1J,LTR,ERVL-MaLR,-137,375,1,21325546,21326029 +2 - chr13 21347312 21347439 chr13,21347228,21347439,+,MIRb,SINE,MIR,30,256,-12,21347199,21347451 -4 + chr13 21377009 21377068 chr13,21377009,21377068,+,L3,LINE,CR1,534,595,-3504,21376476,21380572 -6 + chr13 22107470 22107519 chr13,22107416,22107519,-,MIR3,SINE,MIR,-94,114,16,22107322,22107534 -1 - chr13 22275214 22275259 chr13,22275214,22275259,+,(TTCC)n,Simple_repeat,Simple_repeat,1,45,0,22275214,22275259 +6 + chr13 22852959 22853268 chr13,22852959,22853268,-,AluY,SINE,Alu,0,311,3,22852959,22853270 -6 - chr13 22894656 22895038 chr13,22894627,22895392,+,MER4-int,LTR,ERV1,228,1107,-5491,22894400,22900883 -5 + chr13 22896361 22896502 chr13,22896224,22896518,+,AluSz6,SINE,Alu,2,295,-17,22896223,22896535 -3 + chr13 22924166 22924264 chr13,22924166,22924264,+,L1M4,LINE,L1,4062,4167,-1979,22920105,22926243 +6 + chr13 22924264 22924576 chr13,22924264,22924576,+,AluJr,SINE,Alu,2,307,-5,22924263,22924581 +6 + chr13 22924576 22924602 chr13,22924576,22925053,+,L1M4,LINE,L1,4168,4658,-1488,22920409,22926541 +5 + chr13 23169835 23169975 chr13,23169792,23169975,-,MLT1K,LTR,ERVL-MaLR,-11,584,391,23169781,23170365 +5 - chr13 23467081 23467175 chr13,23467081,23467175,-,MIR3,SINE,MIR,-54,154,63,23467027,23467237 -6 - chr13 23486235 23486284 chr13,23485554,23486284,+,HAL1,LINE,L1,1012,1740,-767,23484543,23487051 +2 + chr13 23486715 23486831 chr13,23486715,23486831,+,HAL1ME,LINE,L1,1978,2108,-357,23484738,23487188 +6 + chr13 23487037 23487329 chr13,23487037,23487329,+,AluSz,SINE,Alu,1,294,-18,23487037,23487347 +6 + chr13 23487347 23487464 chr13,23487347,23487464,+,HAL1,LINE,L1,1836,1952,-469,23485512,23487933 +5 + chr13 23502370 23502618 chr13,23502361,23502618,-,AluSp,SINE,Alu,-50,263,7,23502311,23502624 -2 - chr13 23502626 23502758 chr13,23502626,23502758,-,AluSz,SINE,Alu,-180,132,1,23502446,23502758 -6 - chr13 23890000 23890042 chr13,23889834,23890189,+,MLT1C-int,LTR,ERVL-MaLR,1010,1370,-1,23888825,23890190 +3 + chr13 24034526 24034620 chr13,24034526,24034620,-,MLT1H1,LTR,ERVL-MaLR,-13,476,380,24034513,24034999 -6 - chr13 24034718 24034993 chr13,24034718,24034993,-,MLT1H1,LTR,ERVL-MaLR,-285,310,3,24034433,24034995 -6 - chr13 24252749 24252821 chr13,24252688,24252821,-,MLT1N2,LTR,ERVL-MaLR,-8,554,433,24252680,24253253 +5 - chr13 24336746 24336799 chr13,24336746,24336799,+,L1M5,LINE,L1,4109,4167,-1979,24332638,24338778 +6 + chr13 24336799 24337104 chr13,24336799,24337104,+,AluJr,SINE,Alu,2,300,-12,24336798,24337116 +6 + chr13 24337104 24337121 chr13,24337104,24337568,+,L1M5,LINE,L1,4168,4659,-1487,24332937,24339055 +5 + chr13 24567284 24567396 chr13,24567260,24567554,-,AluJb,SINE,Alu,-12,300,1,24567248,24567554 -3 - chr13 24586462 24586569 chr13,24586292,24586569,-,AluSx1,SINE,Alu,-25,287,11,24586267,24586579 -2 - chr13 24597610 24597673 chr13,24597610,24597673,+,(AT)n,Simple_repeat,Simple_repeat,1,65,0,24597610,24597673 +6 + chr13 25179777 25180079 chr13,25179771,25180118,-,MLT1J1,LTR,ERVL-MaLR,-84,360,1,25179687,25180118 +1 - chr13 25189515 25189668 chr13,25189515,25189668,-,MamRTE1,LINE,RTE-BovB,-631,3181,3002,25188884,25192669 -6 - chr13 25190117 25190269 chr13,25190117,25190269,+,MER45A,DNA,hAT-Tip100,1,178,0,25190117,25190269 -6 + chr13 25210210 25210295 chr13,25210210,25210367,+,MIRc,SINE,MIR,50,212,-56,25210161,25210423 -1 + chr13 25300124 25300429 chr13,25300077,25300429,-,MLT1A,LTR,ERVL-MaLR,0,374,2,25300077,25300430 +5 - chr13 25300681 25300738 chr13,25300681,25300738,+,L2b,LINE,L2,3122,3184,-191,25297560,25300929 -6 + chr13 26053348 26053385 chr13,26053313,26053459,-,L2b,LINE,L2,-2,3373,3225,26053311,26056683 +1 - chr13 26606544 26606655 chr13,26606370,26606655,-,AluJb,SINE,Alu,-30,282,1,26606340,26606655 +5 - chr13 26606826 26606891 chr13,26606826,26607176,+,MER44A,DNA,TcMar-Tigger,1,339,0,26606826,26607176 -2 + chr13 26609475 26609492 chr13,26609475,26609492,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,26609475,26609492 -6 + chr13 26640521 26640705 chr13,26640398,26640705,-,AluSz,SINE,Alu,-7,305,2,26640391,26640706 +5 - chr13 26640749 26641165 chr13,26640749,26641309,-,HAL1,LINE,L1,-1628,879,266,26639121,26641574 +2 - chr13 26641276 26641309 chr13,26640749,26641309,-,HAL1,LINE,L1,-1628,879,266,26639121,26641574 +4 - chr13 27162855 27162923 chr13,27162700,27163259,-,L1MEi,LINE,L1,-53,2159,1542,27162647,27164800 -1 - chr13 27186605 27186647 chr13,27186605,27186647,+,(TTCT)n,Simple_repeat,Simple_repeat,1,39,0,27186605,27186647 -6 + chr13 27186648 27186658 chr13,27186648,27186734,-,L1MC5a,LINE,L1,-2,2775,2685,27186646,27189418 +2 - chr13 27190622 27190681 chr13,27190363,27190681,-,L1ME2,LINE,L1,-304,5820,5487,27190059,27196167 +3 - chr13 27203087 27203205 chr13,27202928,27203226,+,AluSx4,SINE,Alu,1,298,-12,27202928,27203238 -5 + chr13 27207295 27207367 chr13,27207091,27207682,+,L1M4,LINE,L1,5,610,-6907,27207087,27214589 -3 + chr13 27207974 27208050 chr13,27207688,27208132,+,MSTC,LTR,ERVL-MaLR,1,428,0,27207688,27208132 -1 + chr13 27220621 27220817 chr13,27219588,27220817,+,LTR12D,LTR,ERV1,1,1254,0,27219588,27220817 -4 + chr13 27220817 27220855 chr13,27220817,27220885,+,AluJb,SINE,Alu,238,305,-7,27220580,27220892 -2 + chr13 27373376 27373554 chr13,27373376,27373583,+,MIR,SINE,MIR,3,249,-13,27373374,27373596 +4 + chr13 27667540 27667745 chr13,27667449,27667745,-,AluSq2,SINE,Alu,-18,295,1,27667431,27667745 +5 - chr13 27678364 27678756 chr13,27678364,27678756,+,LTR16A,LTR,ERVL,21,447,-4,27678344,27678760 -6 + chr13 27678765 27678949 chr13,27678765,27678997,+,ERV3-16A3_I-int,LTR,ERVL,21,262,-4964,27678745,27683961 -2 + chr13 27680543 27680566 chr13,27680543,27681024,-,ERVL-E-int,LTR,ERVL,-2232,3435,2941,27678311,27683964 +1 - chr13 27833685 27833914 chr13,27833685,27833914,-,MIR,SINE,MIR,0,262,36,27833685,27833949 +6 - chr13 27834021 27834148 chr13,27834021,27834148,+,L2c,LINE,L2,3248,3362,-25,27830774,27834173 -6 + chr13 27848008 27848052 chr13,27847929,27848052,+,L1ME4b,LINE,L1,316,458,-434,27847614,27848486 -4 + chr13 27848097 27848332 chr13,27848097,27848332,+,LTR67B,LTR,ERVL,262,534,-86,27847836,27848418 -6 + chr13 28136843 28136895 chr13,28136758,28136895,-,MIR,SINE,MIR,-92,176,39,28136666,28136933 +5 - chr13 28137075 28137169 chr13,28137075,28137169,+,L2a,LINE,L2,3345,3426,0,28133731,28137169 -6 + chr13 28137219 28137349 chr13,28137219,28137349,-,L3,LINE,CR1,-1316,2783,2645,28135903,28139993 +6 - chr13 28496523 28496562 chr13,28496523,28496562,+,(TCCTGCC)n,Simple_repeat,Simple_repeat,1,40,0,28496523,28496562 +6 + chr13 29239521 29239638 chr13,29239521,29239638,-,L2c,LINE,L2,-8,3379,3256,29239513,29242893 +5 - chr13 29239665 29239747 chr13,29239665,29239747,-,OldhAT1,DNA,hAT-Ac,-1265,1583,1493,29238400,29241239 +6 - chr13 29242529 29242579 chr13,29242463,29242579,+,BLACKJACK,DNA,hAT-Blackjack,2814,2951,-18,29239650,29242597 -4 + chr13 29242668 29242698 chr13,29242668,29242757,-,L2c,LINE,L2,-16,3371,3280,29242652,29246036 +2 - chr13 29476522 29476668 chr13,29476522,29476668,-,L1MB8,LINE,L1,-5,6173,6028,29476517,29482695 +6 - chr13 29476730 29476854 chr13,29476730,29476854,-,L1ME4b,LINE,L1,-603,321,187,29476127,29477040 +6 - chr13 29489625 29489727 chr13,29489552,29489727,-,MER5B,DNA,hAT-Charlie,-3,175,1,29489549,29489727 +4 - chr13 29936685 29936701 chr13,29936685,29936808,-,L1MC5a,LINE,L1,-47,2730,2614,29936638,29939421 -4 - chr13 29942527 29942567 chr13,29942527,29942654,+,LTR103b_Mam,LTR,ERV1?,337,463,-85,29942191,29942739 +5 + chr13 30022787 30023204 chr13,30022787,30023204,+,MER31A,LTR,ERV1,1,455,-30,30022787,30023234 -6 + chr13 30103468 30103820 chr13,30103468,30103820,-,MLT1K,LTR,ERVL-MaLR,-2,593,251,30103466,30104070 +6 - chr13 30104087 30104519 chr13,30104087,30104519,-,L1MC4a,LINE,L1,-1962,5920,5569,30102125,30110087 +6 - chr13 30104608 30104687 chr13,30104608,30104687,+,MER5A,DNA,hAT-Charlie,113,189,0,30104496,30104687 -6 + chr13 30104740 30104997 chr13,30104740,30104997,-,L1ME4b,LINE,L1,-624,268,1,30104116,30104997 +6 - chr13 30105158 30105213 chr13,30105158,30105213,+,MER5B,DNA,hAT-Charlie,114,178,0,30105045,30105213 -6 + chr13 30107856 30107971 chr13,30107856,30108133,+,AluJr,SINE,Alu,1,277,-35,30107856,30108168 -2 + chr13 30151886 30152149 chr13,30151844,30152377,-,MLT1F,LTR,ERVL-MaLR,0,548,2,30151844,30152378 +5 - chr13 30153444 30153479 chr13,30153444,30153479,+,(ATT)n,Simple_repeat,Simple_repeat,1,35,0,30153444,30153479 -6 + chr13 30154388 30154513 chr13,30154388,30154513,+,MIRb,SINE,MIR,1,138,-130,30154388,30154643 +6 + chr13 30154388 30154513 chr13,30154388,30154513,+,MIRb,SINE,MIR,1,138,-130,30154388,30154643 -6 + chr13 30154491 30154586 chr13,30154491,30154759,+,L2,LINE,L2,2509,2788,-631,30151983,30155390 +5 + chr13 30154491 30154759 chr13,30154491,30154759,+,L2,LINE,L2,2509,2788,-631,30151983,30155390 -5 + chr13 30154824 30155059 chr13,30154824,30155059,-,MIR,SINE,MIR,-22,240,1,30154802,30155059 +6 - chr13 30156513 30156635 chr13,30156513,30156635,+,MIRb,SINE,MIR,41,173,-95,30156473,30156730 -6 + chr13 30157352 30157453 chr13,30157352,30157453,+,MIRb,SINE,MIR,104,212,-56,30157249,30157509 -6 + chr13 30157600 30158144 chr13,30157600,30158144,-,L1MEg,LINE,L1,-5497,587,36,30152103,30158179 +6 - chr13 30158302 30158643 chr13,30158302,30158643,-,MLT1A0,LTR,ERVL-MaLR,-12,353,3,30158290,30158645 +6 - chr13 30159004 30159146 chr13,30159004,30159146,+,Charlie15a,DNA,hAT-Charlie,14,171,-53,30158991,30159199 -6 + chr13 30159211 30159355 chr13,30159211,30159355,-,MIR3,SINE,MIR,-47,161,3,30159164,30159357 +6 - chr13 30196443 30196489 chr13,30196343,30196489,+,MER112,DNA,hAT-Charlie,12,165,-96,30196332,30196585 -5 + chr13 30196568 30196881 chr13,30196568,30197089,+,Charlie7,DNA,hAT-Charlie,1758,2355,-257,30194811,30197346 -1 + chr13 30319880 30319903 chr13,30319880,30320097,+,MIR,SINE,MIR,33,262,0,30319848,30320097 -1 + chr13 30340270 30340461 chr13,30340114,30340461,-,MER58B,DNA,hAT-Charlie,-3,338,2,30340111,30340462 +5 - chr13 30340932 30341086 chr13,30340932,30341086,+,Plat_L3,LINE,CR1,3422,3580,-6,30337511,30341092 -6 + chr13 30342802 30342835 chr13,30342802,30342835,+,(CT)n,Simple_repeat,Simple_repeat,1,33,0,30342802,30342835 -6 + chr13 30344672 30344891 chr13,30344470,30344891,+,L1ME4a,LINE,L1,5624,6057,-67,30338847,30344958 +1 + chr13 30345283 30345400 chr13,30345283,30345400,-,Tigger20a,DNA,TcMar-Tigger,-119,854,725,30345164,30346124 -6 - chr13 30345404 30345917 chr13,30345404,30345917,-,MLT1F,LTR,ERVL-MaLR,0,548,1,30345404,30345917 -6 - chr13 30345972 30346300 chr13,30345972,30346300,-,Tigger20a,DNA,TcMar-Tigger,-53,920,578,30345919,30346877 -6 - chr13 30346773 30347167 chr13,30346773,30347214,+,MSTB1,LTR,ERVL-MaLR,1,432,0,30346773,30347214 +5 + chr13 30357265 30357360 chr13,30357143,30357360,-,AluJr,SINE,Alu,-94,218,1,30357049,30357360 +5 - chr13 30357361 30357392 chr13,30357361,30357514,+,MIRc,SINE,MIR,100,259,-9,30357262,30357523 -2 + chr13 30357868 30357889 chr13,30357868,30357996,+,L3,LINE,CR1,3713,3847,-252,30354156,30358248 -2 + chr13 30358254 30358376 chr13,30358097,30358393,+,AluJb,SINE,Alu,2,296,-16,30358096,30358409 -3 + chr13 30365470 30365482 chr13,30365277,30365482,-,L1MA6,LINE,L1,-4,6296,6087,30365273,30371568 +4 - chr13 30367601 30367717 chr13,30367441,30367740,+,AluSx,SINE,Alu,1,298,-14,30367441,30367754 -1 + chr13 30372849 30373032 chr13,30372849,30373146,+,AluY,SINE,Alu,1,295,-16,30372849,30373162 -1 + chr13 30374003 30374093 chr13,30373941,30374128,+,L2c,LINE,L2,3182,3409,-17,30370760,30374145 -5 + chr13 30375467 30375680 chr13,30375189,30375680,-,Tigger5,DNA,TcMar-Tigger,0,2406,1918,30375189,30377597 +4 - chr13 30375678 30375776 chr13,30375678,30375815,-,Tigger5b,DNA,TcMar-Tigger,-252,220,93,30375426,30375907 +2 - chr13 30376889 30377145 chr13,30376889,30377180,+,LTR67B,LTR,ERVL,225,536,-84,30376665,30377264 -1 + chr13 30803545 30803592 chr13,30803545,30803697,+,Tigger16b,DNA,TcMar-Tigger,173,335,-1,30803373,30803698 +4 + chr13 30883094 30883109 chr13,30882973,30883109,-,MIRc,SINE,MIR,-120,148,2,30882853,30883110 -2 - chr13 30882973 30883109 chr13,30882973,30883109,-,MIRc,SINE,MIR,-120,148,2,30882853,30883110 +6 - chr13 30883938 30884060 chr13,30883777,30884074,+,AluJr,SINE,Alu,1,295,-17,30883777,30884091 -3 + chr13 30899406 30899743 chr13,30899389,30899743,-,L2c,LINE,L2,0,3387,2996,30899389,30902738 +5 - chr13 30899838 30899986 chr13,30899838,30900214,-,MSTD,LTR,ERVL-MaLR,0,396,1,30899838,30900214 +2 - chr13 30904766 30904784 chr13,30904766,30904784,+,(TG)n,Simple_repeat,Simple_repeat,1,18,0,30904766,30904784 -6 + chr13 30908840 30909109 chr13,30908840,30909140,+,AluJb,SINE,Alu,1,306,-6,30908840,30909146 -2 + chr13 30916721 30916776 chr13,30916721,30916912,+,L3,LINE,CR1,3232,3424,-675,30913490,30917587 -2 + chr13 30922345 30922553 chr13,30922254,30922553,-,AluSq4,SINE,Alu,-12,299,1,30922242,30922553 +5 - chr13 30928955 30929092 chr13,30928955,30929092,-,MER5A1,DNA,hAT-Charlie,0,166,22,30928955,30929113 +6 - chr13 30929127 30929139 chr13,30929127,30929242,+,MER5A1,DNA,hAT-Charlie,43,162,-4,30929085,30929246 -2 + chr13 30930672 30930799 chr13,30930656,30930799,-,MIRc,SINE,MIR,0,268,96,30930656,30930894 +5 - chr13 30931494 30931993 chr13,30931494,30931993,-,LTR45C,LTR,ERV1,-1,538,1,30931493,30931993 +5 - chr13 30933764 30933846 chr13,30933764,30934098,+,L2,LINE,L2,2130,2486,-933,30931635,30935031 -1 + chr13 30973289 30973481 chr13,30972936,30973538,+,L1ME2,LINE,L1,5557,6164,0,30967380,30973538 -5 + chr13 30977577 30977623 chr13,30977577,30977723,-,MamGyp-int,LTR,Gypsy,-1705,3398,3250,30975872,30980972 +1 - chr13 30996054 30996138 chr13,30995782,30996171,-,MLT1L,LTR,ERVL-MaLR,-188,422,24,30995594,30996194 +1 - chr13 31437490 31437542 chr13,31437490,31437542,+,A-rich,Low_complexity,Low_complexity,1,55,0,31437490,31437542 +6 + chr13 31437772 31437878 chr13,31437772,31437878,-,Tigger15a,DNA,TcMar-Tigger,-61,654,534,31437711,31438411 -6 - chr13 31960888 31960914 chr13,31960888,31960914,+,(TTTG)n,Simple_repeat,Simple_repeat,1,27,0,31960888,31960914 -6 + chr13 31960946 31961372 chr13,31960946,31961372,-,LTR85a,LTR,Gypsy?,0,702,286,31960946,31961657 +6 - chr13 31961674 31961763 chr13,31961674,31961763,-,MER5A1,DNA,hAT-Charlie,-21,145,57,31961653,31961819 +6 - chr13 31985685 31985734 chr13,31985455,31985808,+,THE1A,LTR,ERVL-MaLR,1,353,-2,31985455,31985810 +1 + chr13 32025314 32025587 chr13,32025286,32025587,-,AluSq2,SINE,Alu,-1,312,1,32025285,32025587 +5 - chr13 32025995 32026027 chr13,32025995,32026027,+,L2,LINE,L2,2831,2863,-556,32023165,32026583 -6 + chr13 32027203 32027251 chr13,32027162,32027251,-,L2c,LINE,L2,0,3387,3308,32027162,32030558 +4 - chr13 32425519 32425728 chr13,32425519,32425728,-,MIRc,SINE,MIR,-10,258,22,32425509,32425749 +6 - chr13 32425777 32425946 chr13,32425777,32425946,-,MIR3,SINE,MIR,-23,185,20,32425754,32425965 +6 - chr13 32782874 32783040 chr13,32782761,32783040,-,L1M4,LINE,L1,-2278,3868,3545,32780483,32786584 -1 - chr13 32783439 32783630 chr13,32783439,32783630,-,L1ME3Cz,LINE,L1,-94,6029,5826,32783345,32789455 -6 - chr13 32783633 32783761 chr13,32783633,32783761,+,MER104,DNA,TcMar-Tc2,30,172,-9,32783604,32783770 +6 + chr13 32783767 32784077 chr13,32783767,32784077,-,L1ME3Cz,LINE,L1,-618,379,259,32783149,32784335 -6 - chr13 32784065 32784612 chr13,32784065,32784612,-,L1ME3Cz,LINE,L1,-1121,5025,4436,32782944,32789047 -6 - chr13 32784986 32785160 chr13,32784986,32785160,-,L1MC,LINE,L1,-2932,3214,3015,32782054,32788174 -6 - chr13 32785605 32785699 chr13,32785605,32785699,-,L1MC,LINE,L1,-3629,2517,2417,32781976,32788115 -6 - chr13 32786929 32787252 chr13,32786929,32787252,-,AluSz,SINE,Alu,-18,294,1,32786911,32787252 -6 - chr13 32787448 32787626 chr13,32787448,32787626,+,MIRc,SINE,MIR,43,237,-31,32787406,32787657 +6 + chr13 32877431 32877497 chr13,32877180,32878753,+,ERVL-int,LTR,ERVL,3091,4808,-949,32874090,32879702 -5 + chr13 32906894 32906942 chr13,32906643,32906942,-,AluSq2,SINE,Alu,-12,301,1,32906631,32906942 +4 - chr13 33278376 33278669 chr13,33278346,33278948,+,L4_A_Mam,LINE,RTE-X,4393,4988,-2,33273954,33278950 +3 + chr13 33280790 33280920 chr13,33280782,33280936,-,MIR3,SINE,MIR,-2,206,50,33280780,33280985 -3 - chr13 33333900 33334049 chr13,33333900,33334051,+,MIR3,SINE,MIR,50,201,-7,33333851,33334058 -2 + chr13 33335046 33335188 chr13,33335046,33335188,+,MIRc,SINE,MIR,20,170,-98,33335027,33335286 -6 + chr13 33336471 33336716 chr13,33336471,33336774,+,AluJr,SINE,Alu,1,301,-11,33336471,33336785 -1 + chr13 33359465 33359528 chr13,33357796,33359528,+,LTR12C,LTR,ERV1,2,1579,0,33357795,33359528 -4 + chr13 33359528 33359587 chr13,33359528,33359678,+,AluSz,SINE,Alu,147,296,-16,33359382,33359694 -2 + chr13 33383632 33383679 chr13,33383461,33383782,+,AluSx,SINE,Alu,1,310,-2,33383461,33383784 -3 + chr13 33658195 33658373 chr13,33657893,33658387,-,L1MB3,LINE,L1,-1,6182,5681,33657892,33664067 -3 - chr13 33846190 33846897 chr13,33844418,33846897,-,L1M1,LINE,L1,-4027,3538,279,33840391,33847175 -1 - chr13 33846897 33847201 chr13,33846897,33847201,-,AluSx1,SINE,Alu,-8,304,1,33846889,33847201 -6 - chr13 33847201 33847462 chr13,33847201,33847462,-,L1M1,LINE,L1,-7287,278,13,33839914,33847474 -6 - chr13 33847459 33847522 chr13,33847459,33847522,-,L1MEb,LINE,L1,-5964,130,69,33841495,33847590 -6 - chr13 33847577 33848230 chr13,33847577,33848230,+,L2,LINE,L2,1797,2512,-907,33845781,33849137 +6 + chr13 33848900 33849058 chr13,33848900,33849058,-,L2a,LINE,L2,0,3426,3272,33848900,33852329 -6 - chr13 33849058 33849100 chr13,33849058,33849100,+,(GACA)n,Simple_repeat,Simple_repeat,1,42,0,33849058,33849100 +6 + chr13 33849188 33849335 chr13,33849188,33849335,-,L2a,LINE,L2,-350,3069,2909,33848838,33852243 -6 - chr13 33849335 33849523 chr13,33849335,33849523,-,MER63A,DNA,hAT-Blackjack,-3,207,1,33849332,33849523 -6 - chr13 33849523 33849600 chr13,33849523,33849600,-,L2a,LINE,L2,-511,2908,2838,33849012,33852437 -6 - chr13 33849600 33849904 chr13,33849600,33849904,+,AluSz,SINE,Alu,1,310,-2,33849600,33849906 +6 + chr13 33849904 33849969 chr13,33849904,33849969,-,L2a,LINE,L2,-582,2837,2774,33849322,33852742 -6 - chr13 33850242 33850619 chr13,33850242,33850619,+,Charlie8,DNA,hAT-Charlie,339,744,-1684,33849904,33852303 +6 + chr13 33850644 33850825 chr13,33850644,33851276,+,Charlie8,DNA,hAT-Charlie,782,1535,-893,33849863,33852169 +5 + chr13 34080118 34080134 chr13,34080118,34080289,-,L2,LINE,L2,-955,2464,2287,34079163,34082575 -5 - chr13 34608558 34608619 chr13,34608558,34608654,-,MamGypsy2-I,LTR,Gypsy,-3669,497,406,34604889,34609059 -4 - chr13 34671082 34671182 chr13,34671082,34671609,+,MLT1F,LTR,ERVL-MaLR,5,548,0,34671078,34671609 -1 + chr13 34925834 34926024 chr13,34925830,34926024,-,LTR86A1,LTR,ERVL,-62,451,245,34925768,34926268 +5 - chr13 34926057 34926212 chr13,34926057,34926212,-,LTR86A1,LTR,ERVL,-268,245,84,34925789,34926295 +6 - chr13 35698984 35699021 chr13,35698984,35699021,+,(TTTC)n,Simple_repeat,Simple_repeat,1,37,0,35698984,35699021 +5 + chr13 36346431 36346499 chr13,36346429,36346499,+,(CGC)n,Simple_repeat,Simple_repeat,1,72,0,36346429,36346499 +1 + chr13 36365730 36365793 chr13,36365682,36365793,+,L2b,LINE,L2,3259,3372,-3,36362424,36365796 +2 + chr13 36368199 36368265 chr13,36368199,36368265,-,L2a,LINE,L2,-40,3386,3323,36368159,36371587 -6 - chr13 36849496 36849762 chr13,36849496,36850369,+,L2a,LINE,L2,1295,2259,-1160,36848202,36851529 -1 + chr13 36849940 36850046 chr13,36849496,36850369,+,L2a,LINE,L2,1295,2259,-1160,36848202,36851529 -1 + chr13 37142967 37142999 chr13,37142808,37142999,+,ERV3-16A3_I-int,LTR,ERVL,783,985,-4011,37142026,37147010 -5 + chr13 37143179 37143997 chr13,37143179,37143997,+,Tigger6a,DNA,TcMar-Tigger,24,854,-229,37143156,37144226 -6 + chr13 37144102 37144371 chr13,37144102,37144371,+,ERV3-16A3_I-int,LTR,ERVL,1608,1889,-3337,37142495,37147708 -6 + chr13 37144371 37144790 chr13,37144371,37144790,+,MLT1B,LTR,ERVL-MaLR,1,390,0,37144371,37144790 -6 + chr13 37144790 37145583 chr13,37144790,37145583,+,ERV3-16A3_I-int,LTR,ERVL,1890,2819,-2848,37142901,37148431 -6 + chr13 37145654 37146073 chr13,37145654,37146073,+,ERV3-16A3_I-int,LTR,ERVL,3660,4082,-1144,37141995,37147217 -6 + chr13 37146138 37146394 chr13,37146138,37146394,+,AluJr,SINE,Alu,1,299,-13,37146138,37146407 -6 + chr13 37146618 37146718 chr13,37146618,37146849,+,ERV3-16A3_I-int,LTR,ERVL,4572,4813,-854,37142047,37147703 -1 + chr13 37481467 37481511 chr13,37481447,37481511,-,MLT1J,LTR,ERVL-MaLR,-40,472,405,37481407,37481915 +5 - chr13 37481661 37481727 chr13,37481661,37481823,-,MLT1J,LTR,ERVL-MaLR,-342,170,24,37481319,37481846 +2 - chr13 37484302 37484393 chr13,37484302,37484429,-,MamGypsy2-LTR,LTR,Gypsy,0,183,42,37484302,37484470 +2 - chr13 37484705 37484769 chr13,37484620,37484966,-,THE1B,LTR,ERVL-MaLR,0,364,1,37484620,37484966 +1 - chr13 37534940 37534964 chr13,37534870,37534988,-,UCON105,Unknown,Unknown,-151,122,2,37534719,37534989 -1 - chr13 37535834 37535851 chr13,37535834,37535896,+,MER5B,DNA,hAT-Charlie,1,55,-123,37535834,37536019 +4 + chr13 37547834 37547901 chr13,37545696,37547901,-,L1PA14,LINE,L1,-4833,3324,85,37540863,37547985 -2 - chr13 37548723 37549078 chr13,37548723,37549078,+,THE1B,LTR,ERVL-MaLR,1,364,0,37548723,37549078 +6 + chr13 37549078 37550611 chr13,37549078,37550611,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,37549078,37550611 +6 + chr13 37550611 37550973 chr13,37550611,37550973,+,THE1B,LTR,ERVL-MaLR,1,364,0,37550611,37550973 +6 + chr13 37551257 37551308 chr13,37551257,37551308,+,(AACAA)n,Simple_repeat,Simple_repeat,1,53,0,37551257,37551308 +6 + chr13 37934565 37935037 chr13,37934381,37935273,-,LTR1D,LTR,ERV1,0,975,1,37934381,37935273 -1 - chr13 38013404 38013501 chr13,38013369,38013529,-,AluJb,SINE,Alu,-23,289,130,38013346,38013658 -3 - chr13 38043984 38047325 chr13,38043984,38047325,+,L1PA15,LINE,L1,11,4211,-3944,38043974,38051269 +6 + chr13 38047325 38047601 chr13,38047325,38047601,+,AluSx,SINE,Alu,1,311,-1,38047325,38047602 +6 + chr13 38047601 38048169 chr13,38047601,38050591,+,L1PA15,LINE,L1,4212,7188,-953,38043390,38051544 +5 + chr13 38050817 38050881 chr13,38050591,38050973,+,MSTA,LTR,ERVL-MaLR,1,428,0,38050591,38050973 -5 + chr13 38062149 38062234 chr13,38062143,38062326,+,MIR,SINE,MIR,40,228,-34,38062104,38062360 -3 + chr13 38089573 38089660 chr13,38089528,38090816,-,MER57A-int,LTR,ERV1,-2618,3569,2185,38086910,38093000 +3 - chr13 38093426 38093548 chr13,38091480,38093549,-,MER57A-int,LTR,ERV1,-4003,2184,1,38087477,38093549 +3 - chr13 38372856 38373753 chr13,38372796,38373753,-,HSMAR2,DNA,TcMar-Mariner,-337,965,2,38372459,38373754 -1 - chr13 38373782 38373935 chr13,38373782,38373992,-,AluJr4,SINE,Alu,-25,287,85,38373757,38374076 -5 - chr13 38533343 38533432 chr13,38533108,38533432,+,L1ME3D,LINE,L1,5909,6234,-8,38527200,38533440 -5 + chr13 38533599 38534020 chr13,38533599,38534036,-,MLT1J,LTR,ERVL-MaLR,0,512,39,38533599,38534074 +2 - chr13 38545219 38545269 chr13,38545219,38545269,-,L2a,LINE,L2,0,3426,3377,38545219,38548645 +6 - chr13 38577630 38577710 chr13,38577630,38577770,-,MLT1A,LTR,ERVL-MaLR,-48,342,186,38577582,38577955 -4 - chr13 39053072 39053328 chr13,39052863,39053411,+,MLT2A2,LTR,ERVL,1,554,0,39052863,39053411 +1 + chr13 39085127 39085176 chr13,39084102,39085176,+,MER41-int,LTR,ERV1,4092,5061,-2144,39080011,39087320 +2 + chr13 39085176 39085238 chr13,39085176,39085238,+,OldhAT1,DNA,hAT-Ac,1871,1931,-917,39083306,39086155 +6 + chr13 39085238 39085254 chr13,39085238,39086399,+,MER41-int,LTR,ERV1,5062,6111,-1094,39080177,39087493 +4 + chr13 39221653 39221927 chr13,39221653,39224291,+,L1PA11,LINE,L1,3519,6174,0,39218135,39224291 +5 + chr13 40079237 40079345 chr13,40079237,40079345,-,MIRb,SINE,MIR,-106,162,55,40079131,40079399 +6 - chr13 40079597 40079770 chr13,40079597,40079770,-,Tigger16b,DNA,TcMar-Tigger,-5,331,233,40079592,40080002 +6 - chr13 40080745 40081250 chr13,40080745,40081250,+,L1ME1,LINE,L1,5650,6171,-8,40075096,40081258 -6 + chr13 40081328 40081629 chr13,40081328,40081629,+,AluY,SINE,Alu,1,300,-11,40081328,40081640 -6 + chr13 40082011 40082144 chr13,40082011,40082144,-,MIRb,SINE,MIR,-50,218,77,40081961,40082220 +6 - chr13 40082180 40082201 chr13,40082180,40082201,+,(TTGT)n,Simple_repeat,Simple_repeat,1,21,0,40082180,40082201 -6 + chr13 40082197 40082229 chr13,40082197,40082229,+,(TGG)n,Simple_repeat,Simple_repeat,1,32,0,40082197,40082229 -6 + chr13 40186146 40186184 chr13,40186129,40186184,-,MIRc,SINE,MIR,-114,154,100,40186015,40186283 -2 - chr13 40195256 40195298 chr13,40195256,40195298,+,(AT)n,Simple_repeat,Simple_repeat,1,43,0,40195256,40195298 -6 + chr13 40204328 40204518 chr13,40204028,40204531,-,LTR67B,LTR,ERVL,-2,618,91,40204026,40204621 +3 - chr13 40217610 40217750 chr13,40217610,40217768,+,AluSz6,SINE,Alu,136,297,-15,40217475,40217783 -2 + chr13 40220437 40220502 chr13,40220406,40220578,-,MIR,SINE,MIR,0,262,88,40220406,40220665 +1 - chr13 40343957 40343972 chr13,40343920,40343972,+,MER5B,DNA,hAT-Charlie,5,52,-126,40343916,40344098 -5 + chr13 40344023 40344067 chr13,40344023,40344067,+,(TGTT)n,Simple_repeat,Simple_repeat,1,46,0,40344023,40344067 -6 + chr13 40451063 40451177 chr13,40451063,40451177,+,MIR1_Amn,SINE,MIR,38,159,-71,40451026,40451248 -6 + chr13 40457601 40457712 chr13,40457601,40457712,+,L2a,LINE,L2,3254,3421,-5,40454348,40457717 -6 + chr13 40458475 40458502 chr13,40458475,40458502,+,(CA)n,Simple_repeat,Simple_repeat,1,27,0,40458475,40458502 -6 + chr13 40466616 40466677 chr13,40466616,40466757,-,L2a,LINE,L2,0,3426,3241,40466616,40469997 +2 - chr13 40473994 40474095 chr13,40473846,40474122,+,AluSx1,SINE,Alu,3,296,-16,40473844,40474138 -3 + chr13 40480963 40481006 chr13,40480963,40481330,-,L2c,LINE,L2,0,3375,3011,40480963,40484340 +1 - chr13 40535677 40535778 chr13,40535677,40535778,-,MIRc,SINE,MIR,-129,139,39,40535548,40535816 +6 - chr13 41146427 41146507 chr13,41146051,41146979,-,L1MD,LINE,L1,-832,5314,4381,41145219,41151359 -3 - chr13 41162263 41162403 chr13,41160963,41163166,+,MER4B-int,LTR,ERV1,4099,6239,-679,41156865,41163845 +3 + chr13 41175373 41175659 chr13,41175316,41176377,-,MER11B,LTR,ERVK,0,1236,1,41175316,41176377 -5 - chr13 41187231 41187378 chr13,41187040,41187378,+,MLT1J,LTR,ERVL-MaLR,1,379,-133,41187040,41187511 +2 + chr13 41229194 41229535 chr13,41229194,41229535,-,L1MA5,LINE,L1,-1,6299,5959,41229193,41235493 +6 - chr13 41235116 41235254 chr13,41235092,41235254,-,AluJo,SINE,Alu,-14,298,137,41235078,41235390 -2 - chr13 41235323 41235398 chr13,41235323,41235398,+,Tigger17a,DNA,TcMar-Tigger,579,653,-1,41234745,41235399 +6 + chr13 41235426 41235825 chr13,41235426,41235825,+,MLT1C,LTR,ERVL-MaLR,8,461,-6,41235419,41235831 +6 + chr13 41235828 41235871 chr13,41235828,41235871,+,(AC)n,Simple_repeat,Simple_repeat,1,43,0,41235828,41235871 +6 + chr13 41235894 41236007 chr13,41235894,41236007,-,AluSz6,SINE,Alu,-3,309,199,41235891,41236205 -6 - chr13 41236022 41236077 chr13,41236022,41236077,+,(ACAC)n,Simple_repeat,Simple_repeat,1,55,0,41236022,41236077 +6 + chr13 41236099 41236412 chr13,41236099,41236412,-,AluSg,SINE,Alu,-1,309,1,41236098,41236412 -6 - chr13 41955808 41955878 chr13,41955676,41956064,+,MER57C2,LTR,ERV1,1,423,-11,41955676,41956075 +1 + chr13 41962059 41962107 chr13,41962059,41962107,-,L2b,LINE,L2,-27,3348,3301,41962032,41965407 -6 - chr13 41968401 41968472 chr13,41968267,41968504,+,L2a,LINE,L2,3157,3422,-4,41965111,41968508 +3 + chr13 41976595 41976616 chr13,41976595,41976717,-,L2,LINE,L2,-996,2423,2301,41975599,41979017 -4 - chr13 41980793 41980870 chr13,41980468,41980870,+,LTR16,LTR,ERVL,1,438,0,41980468,41980870 +2 + chr13 41981014 41981181 chr13,41981014,41981181,+,LTR88b,LTR,Gypsy?,668,837,0,41980347,41981181 +6 + chr13 41981276 41981414 chr13,41981276,41981414,+,MER5A,DNA,hAT-Charlie,7,152,-37,41981270,41981451 +6 + chr13 41981455 41981565 chr13,41981455,41981619,+,L1MB5,LINE,L1,6012,6174,0,41975444,41981619 +5 + chr13 42043848 42043948 chr13,42043848,42044157,-,AluJo,SINE,Alu,-27,285,1,42043821,42044157 +2 - chr13 42044107 42044157 chr13,42043848,42044157,-,AluJo,SINE,Alu,-27,285,1,42043821,42044157 +4 - chr13 43158631 43158847 chr13,43158603,43158847,-,MLT1L-int,LTR,ERVL-MaLR,-1079,308,65,43157524,43158911 -1 - chr13 43158916 43159005 chr13,43158916,43159229,-,MLT1L,LTR,ERVL-MaLR,-11,599,241,43158905,43159469 -4 - chr13 43543918 43544179 chr13,43543904,43544179,-,AluSz,SINE,Alu,0,312,1,43543904,43544179 -1 - chr13 43544224 43544388 chr13,43544224,43544388,+,MIRb,SINE,MIR,78,257,-11,43544147,43544399 +6 + chr13 43544507 43544572 chr13,43544507,43544572,+,L2b,LINE,L2,3311,3374,-1,43541197,43544573 +6 + chr13 43546046 43546300 chr13,43546046,43546466,-,L2a,LINE,L2,-16,3410,2916,43546030,43549381 -4 - chr13 43546802 43546839 chr13,43546802,43546839,+,(AACAGA)n,Simple_repeat,Simple_repeat,1,41,0,43546802,43546839 +6 + chr13 43877805 43877833 chr13,43877805,43877833,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,30,0,43877805,43877833 -6 + chr13 43877833 43877958 chr13,43877833,43877958,-,MER5B,DNA,hAT-Charlie,-59,119,1,43877774,43877958 +6 - chr13 43942423 43942613 chr13,43942236,43943409,+,ERV3-16A3_I-int,LTR,ERVL,4029,5206,-20,43938208,43943429 +3 + chr13 44028751 44028875 chr13,44028751,44028875,+,MIRb,SINE,MIR,7,138,-130,44028745,44029005 +6 + chr13 44029146 44029265 chr13,44029146,44029265,+,MLT1B,LTR,ERVL-MaLR,1,125,-265,44029146,44029530 +6 + chr13 44029360 44029622 chr13,44029360,44029622,+,MLT1B,LTR,ERVL-MaLR,131,390,0,44029230,44029622 +6 + chr13 44029672 44029740 chr13,44029672,44029740,+,(TTTTC)n,Simple_repeat,Simple_repeat,1,68,0,44029672,44029740 +6 + chr13 44030043 44030141 chr13,44030043,44030141,+,LFSINE_Vert,SINE,tRNA,54,154,-305,44029990,44030446 +6 + chr13 44137211 44137236 chr13,44137211,44137569,+,L1ME3G,LINE,L1,322,663,-261,44136890,44137830 -1 + chr13 44142564 44142638 chr13,44142564,44142638,+,MIRb,SINE,MIR,106,187,-81,44142459,44142719 +6 + chr13 44146470 44146511 chr13,44146393,44146511,-,L2b,LINE,L2,-16,3359,3241,44146377,44149751 +5 - chr13 44146782 44146816 chr13,44146578,44146816,-,L2b,LINE,L2,-343,3076,2831,44146235,44149646 -2 - chr13 44146578 44146646 chr13,44146578,44146816,-,L2b,LINE,L2,-343,3076,2831,44146235,44149646 +2 - chr13 44147985 44148076 chr13,44147985,44148176,+,L2c,LINE,L2,3184,3387,0,44144802,44148176 +5 + chr13 44172699 44172873 chr13,44170672,44173007,-,L1M1,LINE,L1,-5172,2393,14,44165500,44173020 -3 - chr13 44196006 44196131 chr13,44195961,44196131,-,MIRb,SINE,MIR,-65,203,6,44195896,44196136 -1 - chr13 44234509 44234609 chr13,44234509,44234609,+,MIRb,SINE,MIR,127,245,-23,44234383,44234632 -6 + chr13 44235420 44235631 chr13,44235420,44235631,+,MamRep605,LTR?,LTR?,438,652,-197,44234983,44235828 -6 + chr13 44235713 44235816 chr13,44235713,44235816,+,MIR,SINE,MIR,100,201,-61,44235614,44235877 -6 + chr13 44236063 44236214 chr13,44236063,44236214,+,MER45A,DNA,hAT-Tip100,8,177,-1,44236056,44236215 -6 + chr13 44238941 44239032 chr13,44238941,44239032,-,MLT1K,LTR,ERVL-MaLR,-3,592,502,44238938,44239533 -6 - chr13 44239289 44239361 chr13,44239289,44239361,-,MLT1K,LTR,ERVL-MaLR,-515,80,1,44238774,44239361 -6 - chr13 44239993 44240302 chr13,44239993,44240302,+,AluSz,SINE,Alu,2,310,-2,44239992,44240304 +6 + chr13 44369365 44369406 chr13,44369313,44369406,-,MLT1N2,LTR,ERVL-MaLR,-3,559,462,44369310,44369867 +5 - chr13 44369491 44369722 chr13,44369491,44369722,-,MLT1N2,LTR,ERVL-MaLR,-334,228,1,44369157,44369722 +6 - chr13 44369865 44369877 chr13,44369865,44370159,+,AluSz,SINE,Alu,1,297,-15,44369865,44370174 -1 + chr13 44400936 44400955 chr13,44400936,44401107,-,MER58A,DNA,hAT-Charlie,-1,223,44,44400935,44401150 +2 - chr13 44405967 44405984 chr13,44405967,44406087,+,MIRc,SINE,MIR,26,147,-121,44405942,44406208 -1 + chr13 44576030 44576055 chr13,44576030,44576055,+,(GCG)n,Simple_repeat,Simple_repeat,1,25,0,44576030,44576055 +6 + chr13 44576188 44576208 chr13,44576188,44576208,+,(TCC)n,Simple_repeat,Simple_repeat,1,20,0,44576188,44576208 +6 + chr13 44579015 44579050 chr13,44579015,44579050,+,(ATTT)n,Simple_repeat,Simple_repeat,1,35,0,44579015,44579050 +6 + chr13 44579315 44579390 chr13,44579315,44579390,-,AmnSINE1,SINE,5S-Deu-L2,-159,416,342,44579156,44579731 -6 - chr13 44579458 44579486 chr13,44579458,44579486,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,44579458,44579486 +6 + chr13 44579883 44580190 chr13,44579883,44580190,+,AluY,SINE,Alu,2,308,-3,44579882,44580193 +6 + chr13 44651851 44651868 chr13,44651851,44651957,-,MIRb,SINE,MIR,-85,183,70,44651766,44652026 -4 - chr13 44684487 44684589 chr13,44683981,44684589,+,L1MA7,LINE,L1,5701,6289,-2,44678281,44684591 -5 + chr13 44684623 44684746 chr13,44684623,44684746,-,MIR3,SINE,MIR,-28,180,36,44684595,44684781 +6 - chr13 44700920 44700948 chr13,44700849,44700948,-,MIR3,SINE,MIR,-5,203,105,44700844,44701052 -2 - chr13 44715301 44715393 chr13,44715293,44715425,-,L1ME4b,LINE,L1,-2,890,765,44715291,44716189 +1 - chr13 44799503 44799628 chr13,44799316,44799628,-,AluY,SINE,Alu,-2,309,1,44799314,44799628 +5 - chr13 44799628 44800026 chr13,44799628,44800026,-,LTR75_1,LTR,ERV1,-151,395,1,44799477,44800026 +6 - chr13 44800056 44800359 chr13,44800056,44800359,-,AluSx,SINE,Alu,-15,297,1,44800041,44800359 +6 - chr13 44800539 44801005 chr13,44800539,44801148,+,MLT2F,LTR,ERVL,1,657,-6,44800539,44801154 -2 + chr13 44804720 44804748 chr13,44804622,44804748,+,LTR33,LTR,ERVL,19,140,-375,44804604,44805123 -4 + chr13 44804799 44804949 chr13,44804799,44804949,+,MLT2B3,LTR,ERVL,267,434,-127,44804533,44805076 -6 + chr13 44804977 44805030 chr13,44804977,44805053,+,AluYh7,SINE,Alu,222,297,-14,44804756,44805067 -2 + chr13 45343426 45343540 chr13,45343260,45343542,-,AluSx1,SINE,Alu,-31,281,2,45343229,45343543 -3 - chr13 45344304 45344446 chr13,45344295,45344461,-,AluSx,SINE,Alu,-24,288,123,45344271,45344583 -1 - chr13 45344840 45344909 chr13,45344840,45345140,+,AluSx1,SINE,Alu,1,300,-12,45344840,45345152 +4 + chr13 45350323 45350446 chr13,45350316,45350446,-,L2c,LINE,L2,0,3387,3248,45350316,45353693 -1 - chr13 45351265 45351285 chr13,45351162,45351285,-,FLAM_A,SINE,Alu,-19,123,1,45351143,45351285 -2 - chr13 45351897 45352014 chr13,45351867,45352176,-,AluJb,SINE,Alu,-8,304,3,45351859,45352178 -3 - chr13 45360141 45360212 chr13,45360114,45360212,-,AluSp,SINE,Alu,-7,306,209,45360107,45360420 -2 - chr13 45360224 45360486 chr13,45360224,45360515,-,L1MB4,LINE,L1,-1,6179,5888,45360223,45366402 -5 - chr13 45369801 45369915 chr13,45369605,45369915,-,AluJb,SINE,Alu,-8,304,1,45369597,45369915 -2 - chr13 45369959 45370316 chr13,45369932,45370316,+,L2a,LINE,L2,2960,3415,-11,45366973,45370327 +1 + chr13 45375017 45375100 chr13,45375017,45375100,-,MSTD,LTR,ERVL-MaLR,0,396,314,45375017,45375413 -6 - chr13 45375428 45375557 chr13,45375428,45375557,-,L2b,LINE,L2,-9,3366,3235,45375419,45378791 -6 - chr13 45375715 45375907 chr13,45375715,45375907,+,AluSq10,SINE,Alu,1,191,-122,45375715,45376029 +6 + chr13 45375993 45376039 chr13,45375993,45376039,+,MSTA1,LTR,ERVL-MaLR,419,465,0,45375575,45376039 +6 + chr13 45376122 45376414 chr13,45376122,45376414,+,AluY,SINE,Alu,1,300,-11,45376122,45376425 +6 + chr13 45376606 45377215 chr13,45376606,45377218,-,HERVE-int,LTR,ERV1,-3967,3846,3249,45372639,45380466 -5 - chr13 45378530 45378671 chr13,45378076,45378674,-,HERVE-int,LTR,ERV1,-3967,3846,3249,45374109,45381922 -5 - chr13 45379195 45379338 chr13,45378752,45379338,-,HERVE-int,LTR,ERV1,-3979,3834,3249,45374773,45382586 -5 - chr13 45379416 45380001 chr13,45379416,45380004,-,HERVE-int,LTR,ERV1,-3979,3834,3249,45375437,45383252 -4 - chr13 45381142 45381217 chr13,45380619,45381220,-,HERVE-int,LTR,ERV1,-3967,3846,3249,45376652,45384468 -5 - chr13 45382825 45383235 chr13,45382636,45383238,-,HERVE-int,LTR,ERV1,-3967,3846,3249,45378669,45386486 -1 - chr13 45383760 45383838 chr13,45383316,45383907,-,HERVE-int,LTR,ERV1,-3979,3834,3249,45379337,45387155 -3 - chr13 45387585 45387810 chr13,45387508,45387810,-,MER63D,DNA,hAT-Blackjack,-722,339,1,45386786,45387810 -1 - chr13 45387932 45388109 chr13,45387932,45388109,-,AluJb,SINE,Alu,-1,311,128,45387931,45388236 -6 - chr13 45388109 45388406 chr13,45388109,45388406,-,AluY,SINE,Alu,-14,297,1,45388095,45388406 -6 - chr13 45388406 45388426 chr13,45388406,45388426,-,AluJb,SINE,Alu,-185,127,85,45388221,45388510 -6 - chr13 45388426 45388711 chr13,45388426,45388711,+,AluJb,SINE,Alu,1,292,-20,45388426,45388731 +6 + chr13 45388711 45388776 chr13,45388711,45388776,-,AluJb,SINE,Alu,-228,84,23,45388483,45388798 -6 - chr13 45389181 45389283 chr13,45389181,45389283,+,L1MB3,LINE,L1,6050,6151,-32,45383132,45389315 +6 + chr13 45391278 45391341 chr13,45391278,45391341,+,(GCGCCA)n,Simple_repeat,Simple_repeat,1,65,0,45391278,45391341 +6 + chr13 45391534 45391757 chr13,45391534,45391757,+,AluSz6,SINE,Alu,1,302,-10,45391534,45391767 +5 + chr13 45392237 45392508 chr13,45392237,45392508,+,L1MC1,LINE,L1,6024,6322,-11,45386214,45392519 +6 + chr13 45392560 45392804 chr13,45392560,45392804,-,AluSz,SINE,Alu,-25,287,39,45392535,45392842 -6 - chr13 45393121 45393155 chr13,45393121,45393155,+,G-rich,Low_complexity,Low_complexity,1,34,0,45393121,45393155 +6 + chr13 45418419 45418447 chr13,45418419,45418447,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,28,0,45418419,45418447 +6 + chr13 45680184 45680595 chr13,45679858,45680595,-,LTR1B,LTR,ERV1,-2,822,2,45679856,45680596 +5 - chr13 45680595 45680714 chr13,45680595,45680714,+,LTR33,LTR,ERVL,229,353,-162,45680367,45680876 -6 + chr13 45682302 45682419 chr13,45682254,45682455,+,AluJb,SINE,Alu,111,311,-1,45682144,45682456 -3 + chr13 45685064 45685190 chr13,45685034,45685190,+,AluJb,SINE,Alu,129,284,-28,45684906,45685218 -4 + chr13 46094853 46095002 chr13,46094506,46095665,+,ERV3-16A3_I-int,LTR,ERVL,1310,2470,-2756,46093197,46098421 +3 + chr13 46096277 46096424 chr13,46096180,46096424,+,LTR16B2,LTR,ERVL,217,461,-1,46095964,46096425 +2 + chr13 46096436 46096495 chr13,46096436,46096495,+,ERV3-16A3_I-int,LTR,ERVL,3433,3487,-1739,46093004,46098234 +6 + chr13 46096495 46096531 chr13,46096495,46096795,+,AluSx1,SINE,Alu,1,299,-13,46096495,46096808 +5 + chr13 46097110 46097399 chr13,46096795,46098485,+,ERV3-16A3_I-int,LTR,ERVL,3488,5226,0,46093308,46098485 +3 + chr13 46098398 46098485 chr13,46096795,46098485,+,ERV3-16A3_I-int,LTR,ERVL,3488,5226,0,46093308,46098485 +2 + chr13 46098485 46098944 chr13,46098485,46098944,+,LTR16,LTR,ERVL,1,450,-1,46098485,46098945 +6 + chr13 46098983 46099128 chr13,46098983,46099128,-,L2c,LINE,L2,-161,3226,3069,46098822,46102196 -6 - chr13 46099483 46099565 chr13,46099483,46099565,+,L3,LINE,CR1,3898,3981,-118,46095586,46099683 +6 + chr13 46099657 46099729 chr13,46099657,46099729,-,MIR,SINE,MIR,-39,223,149,46099618,46099877 -6 - chr13 46099742 46100054 chr13,46099742,46100054,+,AluSx,SINE,Alu,1,312,0,46099742,46100054 +5 + chr13 46100392 46100670 chr13,46100392,46100670,+,LTR78,LTR,ERV1,111,398,-906,46100282,46101576 +6 + chr13 46100999 46101347 chr13,46100999,46101374,+,MER57C2,LTR,ERV1,1,434,0,46100999,46101374 +5 + chr13 46113184 46113332 chr13,46112923,46113519,-,LTR87,LTR,ERVL?,-28,596,1,46112895,46113519 -5 - chr13 46117864 46117918 chr13,46116899,46117918,+,L1ME1,LINE,L1,3648,4718,-1496,46113252,46119414 +1 + chr13 46117918 46118402 chr13,46117918,46118402,+,LTR40c,LTR,ERVL,1,465,0,46117918,46118402 +6 + chr13 46118402 46119867 chr13,46118402,46119867,+,L1ME1,LINE,L1,4719,6214,-33,46113684,46119900 +6 + chr13 46119914 46119959 chr13,46119914,46119959,+,G-rich,Low_complexity,Low_complexity,1,45,0,46119914,46119959 +6 + chr13 46120031 46120203 chr13,46120031,46120203,+,MIRb,SINE,MIR,20,253,-15,46120012,46120218 +6 + chr13 46121221 46121392 chr13,46121221,46121392,+,MER5B,DNA,hAT-Charlie,7,178,0,46121215,46121392 +6 + chr13 46121407 46121555 chr13,46121407,46121555,+,MER5A,DNA,hAT-Charlie,8,160,-29,46121400,46121584 +6 + chr13 46121599 46121717 chr13,46121599,46121717,+,L2b,LINE,L2,2969,3086,-289,46118631,46122006 +6 + chr13 46121844 46121882 chr13,46121844,46121882,+,L3,LINE,CR1,3951,3991,-108,46117894,46121990 +6 + chr13 46122324 46122462 chr13,46122324,46122462,-,MER5A1,DNA,hAT-Charlie,0,166,9,46122324,46122470 -6 - chr13 46296445 46296869 chr13,46296408,46296869,-,MLT1D,LTR,ERVL-MaLR,-8,497,1,46296400,46296869 +5 - chr13 46296913 46297049 chr13,46296913,46297049,-,MIRb,SINE,MIR,-122,146,5,46296791,46297053 +6 - chr13 46297168 46297345 chr13,46297168,46297345,+,MIR3,SINE,MIR,31,206,-2,46297138,46297347 -6 + chr13 46297374 46297617 chr13,46297374,46297617,-,Charlie10a,DNA,hAT-Charlie,0,280,39,46297374,46297655 +6 - chr13 46455159 46455481 chr13,46455159,46455481,-,LTR41B,LTR,ERVL,0,758,435,46455159,46455915 +5 - chr13 46457840 46457978 chr13,46457778,46457978,+,MIRb,SINE,MIR,47,248,-20,46457732,46457998 -4 + chr13 46458151 46458431 chr13,46458151,46458431,-,Tigger3,DNA,TcMar-Tigger,0,3029,2745,46458151,46461175 +1 - chr13 46458431 46458464 chr13,46458431,46458464,+,(ATA)n,Simple_repeat,Simple_repeat,1,34,0,46458431,46458464 -6 + chr13 46458464 46458733 chr13,46458464,46458733,-,Tigger3,DNA,TcMar-Tigger,-285,2744,2467,46458179,46461199 +6 - chr13 46464675 46464819 chr13,46464671,46464930,+,HERVE-int,LTR,ERV1,3249,3505,-4308,46461423,46469238 -1 + chr13 46465843 46466006 chr13,46465839,46466098,+,HERVE-int,LTR,ERV1,3249,3505,-4308,46462591,46470406 -1 + chr13 46466609 46466783 chr13,46466605,46467206,+,HERVE-int,LTR,ERV1,3249,3846,-3967,46463357,46471173 -1 + chr13 46474246 46474334 chr13,46474045,46474413,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,46474045,46474413 +1 + chr13 46852143 46852226 chr13,46851790,46852318,+,MLT1D,LTR,ERVL-MaLR,1,505,0,46851790,46852318 +1 + chr13 47825330 47825427 chr13,47825250,47825621,-,THE1C,LTR,ERVL-MaLR,-2,373,1,47825248,47825621 +5 - chr13 47835818 47835956 chr13,47835818,47836328,+,MER51A,LTR,ERV1,1,634,0,47835818,47836328 -1 + chr13 47907331 47907357 chr13,47907172,47907477,+,AluJb,SINE,Alu,2,304,-8,47907171,47907485 -1 + chr13 47930232 47930503 chr13,47930232,47930503,+,L3,LINE,CR1,3742,4014,-85,47926491,47930588 -6 + chr13 47930518 47930629 chr13,47930518,47930629,+,L2a,LINE,L2,3309,3424,-2,47927210,47930631 -6 + chr13 47930634 47930756 chr13,47930634,47930756,+,FLAM_A,SINE,Alu,2,128,-14,47930633,47930770 -6 + chr13 47930756 47930922 chr13,47930756,47930922,+,A-rich,Low_complexity,Low_complexity,1,164,0,47930756,47930922 -6 + chr13 47931259 47931353 chr13,47931259,47931353,+,L2b,LINE,L2,3270,3367,-8,47927990,47931361 -6 + chr13 47931447 47931601 chr13,47931447,47931601,+,L2b,LINE,L2,3235,3387,0,47928213,47931601 -6 + chr13 47931848 47932150 chr13,47931848,47932150,-,AluY,SINE,Alu,-9,302,1,47931839,47932150 +6 - chr13 47932275 47932298 chr13,47932275,47932298,+,(T)n,Simple_repeat,Simple_repeat,1,23,0,47932275,47932298 -6 + chr13 47932517 47932622 chr13,47932517,47932735,+,Charlie10a,DNA,hAT-Charlie,48,250,-30,47932470,47932765 -1 + chr13 48001540 48001602 chr13,48001540,48001602,+,MIRc,SINE,MIR,67,148,-82,48001474,48001684 +6 + chr13 48001605 48001684 chr13,48001605,48001684,-,L2a,LINE,L2,-5,3421,3341,48001600,48005024 -6 - chr13 48001785 48001822 chr13,48001785,48002189,-,LTR7,LTR,ERV1,0,450,1,48001785,48002189 -4 - chr13 48002435 48002549 chr13,48002264,48002549,-,AluJo,SINE,Alu,-32,280,1,48002232,48002549 -2 - chr13 48041921 48042184 chr13,48041921,48042729,-,LTR8B,LTR,ERV1,-14,806,1,48041907,48042729 +1 - chr13 48077442 48077553 chr13,48077400,48077705,-,AluJo,SINE,Alu,0,312,6,48077400,48077710 -3 - chr13 48296513 48296860 chr13,48296477,48296860,+,LTR101_Mam,LTR,ERVL,45,470,-359,48296433,48297219 -5 + chr13 48302339 48302441 chr13,48302237,48302441,-,Charlie17a,DNA,hAT-Charlie,0,217,18,48302237,48302458 +4 - chr13 48340906 48341330 chr13,48340906,48341624,-,L1ME1,LINE,L1,-2,6177,5443,48340904,48347066 +1 - chr13 48570639 48570679 chr13,48570587,48570679,-,MER5A,DNA,hAT-Charlie,-80,109,22,48570507,48570700 +5 - chr13 48576974 48577110 chr13,48576914,48577110,+,L2c,LINE,L2,3176,3387,0,48573739,48577110 -5 + chr13 49793247 49793307 chr13,49793247,49793469,+,L2a,LINE,L2,3189,3417,-9,49790059,49793478 +5 + chr13 49982940 49983236 chr13,49982940,49983236,+,AluSc5,SINE,Alu,1,309,0,49982940,49983236 -6 + chr13 49983243 49983536 chr13,49983243,49983536,+,AluY,SINE,Alu,1,293,-18,49983243,49983554 -6 + chr13 50029278 50029492 chr13,50029170,50029500,+,L2c,LINE,L2,3022,3366,-21,50026149,50029521 -3 + chr13 50043437 50043483 chr13,50042997,50043483,+,L2a,LINE,L2,2910,3378,-48,50040088,50043531 -5 + chr13 50043967 50044020 chr13,50043967,50044020,+,A-rich,Low_complexity,Low_complexity,1,54,0,50043967,50044020 -6 + chr13 50125824 50125845 chr13,50125824,50125845,+,(GGC)n,Simple_repeat,Simple_repeat,1,21,0,50125824,50125845 +6 + chr13 50125845 50125875 chr13,50125845,50125875,+,(CGCGGC)n,Simple_repeat,Simple_repeat,4,56,0,50125842,50125875 +6 + chr13 50807856 50807911 chr13,50807782,50807911,-,L2c,LINE,L2,-214,3173,3000,50807568,50810910 -1 - chr13 50808540 50808596 chr13,50808484,50808596,+,L2b,LINE,L2,3259,3375,0,50805226,50808596 +2 + chr13 50818521 50818592 chr13,50818479,50818592,-,L2a,LINE,L2,-5,3421,3290,50818474,50821881 -3 - chr13 50848990 50849010 chr13,50848990,50849010,+,(TATATT)n,Simple_repeat,Simple_repeat,1,20,0,50848990,50849010 +6 + chr13 50849010 50849326 chr13,50849010,50849326,-,AluSz,SINE,Alu,0,312,3,50849010,50849328 -6 - chr13 50849326 50849342 chr13,50849326,50849342,+,(TATATT)n,Simple_repeat,Simple_repeat,3,18,0,50849324,50849342 +6 + chr13 50876686 50876962 chr13,50876557,50877084,-,L1ME1,LINE,L1,-1125,5021,4513,50875432,50881596 +5 - chr13 50882048 50882135 chr13,50881692,50882135,-,L1MB3,LINE,L1,-15,6168,5718,50881677,50887852 +5 - chr13 50882439 50882645 chr13,50882439,50882651,-,L1MEd,LINE,L1,-5340,1746,1521,50877099,50884171 +5 - chr13 50889609 50889694 chr13,50889603,50889694,+,MLT1K,LTR,ERVL-MaLR,506,595,0,50889098,50889694 -4 + chr13 50891304 50891473 chr13,50891290,50891473,+,MER63A,DNA,hAT-Blackjack,15,202,-8,50891276,50891481 -4 + chr13 50905056 50905081 chr13,50905056,50905081,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,50905056,50905081 -6 + chr13 51082317 51082353 chr13,51082317,51082353,+,A-rich,Low_complexity,Low_complexity,1,36,0,51082317,51082353 -6 + chr13 51083046 51083078 chr13,51083046,51083078,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,51083046,51083078 -6 + chr13 51171988 51172222 chr13,51170316,51173284,+,HERVH-int,LTR,ERV1,1,2995,-4718,51170316,51178002 -1 + chr13 51172253 51172388 chr13,51170316,51173284,+,HERVH-int,LTR,ERV1,1,2995,-4718,51170316,51178002 -1 + chr13 51452367 51452399 chr13,51452365,51452399,+,G-rich,Low_complexity,Low_complexity,1,37,0,51452365,51452399 +1 + chr13 51454634 51454723 chr13,51454634,51454723,-,L2c,LINE,L2,-11,3376,3289,51454623,51458011 -6 - chr13 51460380 51460495 chr13,51460217,51460495,+,MSTB,LTR,ERVL-MaLR,1,288,-138,51460217,51460633 +2 + chr13 51461968 51462239 chr13,51461944,51462239,-,AluSz6,SINE,Alu,-10,302,3,51461934,51462241 -2 - chr13 51462239 51462373 chr13,51462239,51462373,-,L2c,LINE,L2,-689,2730,2593,51461550,51464965 -6 - chr13 51462502 51462806 chr13,51462502,51462806,-,L2a,LINE,L2,-2,3424,3076,51462500,51465881 -6 - chr13 51462836 51463141 chr13,51462836,51463141,+,MLT1A0,LTR,ERVL-MaLR,1,331,-34,51462836,51463175 +6 + chr13 51463141 51463450 chr13,51463141,51463450,-,AluSx1,SINE,Alu,-3,309,1,51463138,51463450 -6 - chr13 51463450 51463493 chr13,51463450,51463493,+,MLT1A0,LTR,ERVL-MaLR,332,364,-1,51463119,51463494 +6 + chr13 51463575 51463684 chr13,51463575,51463684,+,(ATTAGT)n,Simple_repeat,Simple_repeat,1,115,0,51463575,51463684 +6 + chr13 51463712 51463825 chr13,51463712,51463825,-,L2a,LINE,L2,-2,3424,3278,51463710,51467102 -6 - chr13 51463825 51464044 chr13,51463825,51464044,-,MER53,DNA,hAT,-1,192,1,51463824,51464044 -6 - chr13 51464044 51464162 chr13,51464044,51464162,-,L2a,LINE,L2,-98,3277,3168,51463946,51467329 -6 - chr13 51464656 51464716 chr13,51464656,51464716,-,L2c,LINE,L2,-68,3319,3260,51464588,51467975 -6 - chr13 51464879 51465020 chr13,51464879,51465231,-,L1ME4a,LINE,L1,-30,6094,5678,51464849,51470908 -5 - chr13 51467509 51467684 chr13,51467246,51467715,+,MLT2B4,LTR,ERVL,1,515,-41,51467246,51467756 +5 + chr13 51468220 51468353 chr13,51468220,51468353,-,MIRb,SINE,MIR,-73,195,55,51468147,51468407 -6 - chr13 51468746 51468916 chr13,51468746,51468916,-,AluJo,SINE,Alu,-6,306,136,51468740,51469051 -5 - chr13 51468940 51469101 chr13,51468940,51469101,+,Tigger13a,DNA,TcMar-Tigger,109,282,-489,51468832,51469590 +6 + chr13 51469200 51469341 chr13,51469200,51469341,+,Tigger13a,DNA,TcMar-Tigger,619,770,-1,51468582,51469342 +6 + chr13 51471838 51472075 chr13,51471499,51472110,+,Tigger3b,DNA,TcMar-Tigger,10,661,-570,51471490,51472680 +5 + chr13 51495630 51495669 chr13,51495630,51495818,-,L3,LINE,CR1,-2,4097,3893,51495628,51499710 -5 - chr13 51500105 51500136 chr13,51500000,51500136,+,MER63B,DNA,hAT-Blackjack,299,435,-1,51499702,51500137 +2 + chr13 51500487 51500501 chr13,51500487,51500539,-,Tigger19a,DNA,TcMar-Tigger,-6,317,263,51500481,51500801 -5 - chr13 51506543 51506638 chr13,51506540,51506901,-,MLT2B4,LTR,ERVL,-182,374,1,51506358,51506901 -5 - chr13 51515649 51515838 chr13,51509717,51515838,-,L1PA5,LINE,L1,0,6154,9,51509717,51515846 -2 - chr13 51515848 51515956 chr13,51515848,51516138,-,L1P2,LINE,L1,-371,5783,5495,51515477,51521632 -5 - chr13 51518413 51518468 chr13,51518413,51518499,+,LTR90B,LTR,LTR,658,743,-53,51517756,51518552 +5 + chr13 51541642 51541720 chr13,51541642,51541720,+,MamRep434,DNA,TcMar-Tigger,317,390,-36,51541326,51541756 +6 + chr13 51541837 51542085 chr13,51541837,51542085,-,MIR,SINE,MIR,-2,260,5,51541835,51542089 -6 - chr13 51549119 51549211 chr13,51549110,51549211,-,LTR16,LTR,ERVL,0,489,370,51549110,51549580 -2 - chr13 51549710 51549873 chr13,51549497,51549873,+,MLT1A,LTR,ERVL-MaLR,1,369,-5,51549497,51549878 +5 + chr13 51551125 51551188 chr13,51550933,51551310,+,L2,LINE,L2,2406,2809,-610,51548528,51551920 +3 + chr13 51552083 51552364 chr13,51551962,51552491,+,LTR45C,LTR,ERV1,1,539,0,51551962,51552491 +5 + chr13 51804753 51804862 chr13,51804753,51804862,-,MamRep1879,DNA,hAT-Tip100?,-40,176,63,51804713,51804924 -6 - chr13 51805469 51805630 chr13,51805469,51805666,+,MIR,SINE,MIR,31,256,-6,51805439,51805672 +5 + chr13 51813633 51813706 chr13,51813633,51813706,-,MER5A,DNA,hAT-Charlie,-105,84,2,51813528,51813707 -6 - chr13 52129296 52129466 chr13,52129296,52129466,-,MIRb,SINE,MIR,-33,235,39,52129263,52129504 -6 - chr13 52129598 52129813 chr13,52129598,52129813,-,Charlie2b,DNA,hAT-Charlie,-106,2676,2445,52129492,52132257 -6 - chr13 52129828 52129979 chr13,52129828,52129979,-,MLT1B,LTR,ERVL-MaLR,-213,177,22,52129615,52130000 -6 - chr13 52130051 52130178 chr13,52130051,52130178,-,MLT1B-int,LTR,ERVL-MaLR,-644,743,613,52129407,52130790 -6 - chr13 52130171 52130760 chr13,52130171,52130760,-,Charlie2b,DNA,hAT-Charlie,-305,2477,1800,52129866,52132559 -6 - chr13 52130878 52130950 chr13,52130878,52130950,-,Charlie2b,DNA,hAT-Charlie,-2661,121,45,52128217,52130994 -6 - chr13 52130973 52131674 chr13,52130973,52131674,+,L1MC4a,LINE,L1,6288,7007,-875,52124686,52132549 +6 + chr13 52131659 52132057 chr13,52131659,52132061,+,L1MC4a,LINE,L1,7306,7739,-256,52124354,52132317 +4 + chr13 52168681 52168982 chr13,52168681,52168982,+,AluSx3,SINE,Alu,1,301,-10,52168681,52168992 -6 + chr13 52169009 52169304 chr13,52169009,52169326,+,AluJr,SINE,Alu,2,303,-9,52169008,52169335 -2 + chr13 52340904 52341057 chr13,52340904,52341130,-,L1ME3E,LINE,L1,-46,6196,5969,52340858,52347098 -4 - chr13 52341552 52341661 chr13,52341552,52341661,+,L1PA11,LINE,L1,1677,1792,-4993,52339876,52346654 +6 + chr13 52341638 52341896 chr13,52341638,52342765,+,L1PA11,LINE,L1,5672,6794,0,52335967,52342765 +5 + chr13 52484520 52484665 chr13,52484446,52484665,+,L1ME3E,LINE,L1,5969,6189,-53,52478478,52484718 -4 + chr13 52490186 52490215 chr13,52490186,52490391,-,AluJo,SINE,Alu,-106,206,1,52490080,52490391 -4 - chr13 52497562 52497674 chr13,52496722,52497750,+,L1M4,LINE,L1,4010,5093,-1053,52492713,52498803 +5 + chr13 52497097 52497750 chr13,52496722,52497750,+,L1M4,LINE,L1,4010,5093,-1053,52492713,52498803 -5 + chr13 52497750 52498377 chr13,52497750,52498377,-,L1MA4A,LINE,L1,-5886,1866,1247,52491864,52499623 +6 - chr13 52498383 52498687 chr13,52498383,52498687,-,L1MC,LINE,L1,-577,5602,5282,52497806,52503968 +6 - chr13 52498706 52498868 chr13,52498706,52498868,-,L1MA6,LINE,L1,-6,6294,6129,52498700,52504996 +6 - chr13 52499355 52499435 chr13,52499355,52499435,-,LFSINE_Vert,SINE,tRNA,-366,93,20,52498989,52499454 +6 - chr13 52500134 52500195 chr13,52500134,52500200,+,A-rich,Low_complexity,Low_complexity,1,70,0,52500134,52500200 -1 + chr13 52642369 52642426 chr13,52642360,52642426,-,MLT1N2-int,LTR,ERVL-MaLR,-67,1320,1254,52642293,52643679 -2 - chr13 52651305 52651995 chr13,52651260,52651995,+,L1M5,LINE,L1,4048,4795,-1351,52647213,52653346 -5 + chr13 53151704 53151808 chr13,53151538,53152110,-,LTR41C,LTR,ERVL,-42,659,1,53151496,53152110 +1 - chr13 53193667 53193744 chr13,53193635,53193772,-,L2a,LINE,L2,-9,3417,3273,53193626,53197044 -1 - chr13 53345211 53345958 chr13,53343495,53346490,+,LTR53-int,LTR,ERVL,248,3322,-7,53343248,53346497 +1 + chr13 53410277 53410524 chr13,53410277,53410524,-,MER1B,DNA,hAT-Charlie,-81,258,1,53410196,53410524 -6 - chr13 53410708 53410852 chr13,53410708,53410852,+,MIR3,SINE,MIR,52,205,-3,53410657,53410855 +6 + chr13 53815419 53815493 chr13,53815232,53815498,+,L2b,LINE,L2,2918,3174,-201,53812315,53815699 +1 + chr13 53838739 53838789 chr13,53838729,53838824,+,L1M3,LINE,L1,2241,2341,-3799,53836489,53842623 +3 + chr13 53840683 53840810 chr13,53840610,53841183,-,MLT1E3,LTR,ERVL-MaLR,-3,621,8,53840607,53841190 -3 - chr13 53844356 53844454 chr13,53844356,53844454,+,MIRb,SINE,MIR,28,127,-141,53844329,53844595 +6 + chr13 53873454 53873903 chr13,53873454,53873903,-,MER51E,LTR,ERV1,-19,463,2,53873435,53873904 -6 - chr13 53873903 53873979 chr13,53873903,53873979,-,MER51E,LTR,ERV1,-407,75,3,53873496,53873981 -6 - chr13 53873993 53874127 chr13,53873993,53874127,-,MER3,DNA,hAT-Charlie,-59,150,7,53873934,53874133 -6 - chr13 53874712 53874926 chr13,53874712,53874926,+,MER20,DNA,hAT-Charlie,2,218,-1,53874711,53874927 +6 + chr13 53874953 53875026 chr13,53874953,53875026,-,MLT1K,LTR,ERVL-MaLR,-50,545,471,53874903,53875496 -6 - chr13 53875756 53875899 chr13,53875756,53875899,+,MIR,SINE,MIR,122,262,0,53875635,53875899 +6 + chr13 53875902 53876059 chr13,53875902,53876059,-,L3,LINE,CR1,-2810,1289,1122,53873092,53877180 -6 - chr13 54120940 54121044 chr13,54120866,54121246,-,MSTA,LTR,ERVL-MaLR,0,428,1,54120866,54121246 +3 - chr13 54124538 54124664 chr13,54124538,54124664,-,MER94,DNA,hAT-Blackjack,-6,128,1,54124532,54124664 +6 - chr13 54124819 54125272 chr13,54124819,54126016,+,Tigger3b,DNA,TcMar-Tigger,14,1231,0,54124806,54126016 -5 + chr13 54127417 54127429 chr13,54127417,54127815,-,LTR7,LTR,ERV1,-2,448,1,54127415,54127815 +2 - chr13 54130874 54131071 chr13,54130017,54132234,-,HERVH-int,LTR,ERV1,-4726,2987,793,54125291,54133026 +3 - chr13 54132613 54132758 chr13,54132288,54132758,-,HERVH-int,LTR,ERV1,-7254,459,1,54125034,54132758 +4 - chr13 54132760 54132866 chr13,54132760,54133158,-,LTR7,LTR,ERV1,-2,448,1,54132758,54133158 +1 - chr13 54940843 54940880 chr13,54939085,54941418,-,HERVFH21-int,LTR,ERV1,-668,5861,3523,54938417,54944940 -1 - chr13 54941895 54942055 chr13,54941418,54942141,-,LTR30,LTR,ERV1,0,722,1,54941418,54942141 -1 - chr13 54952301 54952393 chr13,54952210,54952656,+,Tigger2,DNA,TcMar-Tigger,2273,2718,0,54949938,54952656 +3 + chr13 54986220 54986281 chr13,54985723,54986281,-,LTR80B,LTR,ERVL,-2,582,2,54985721,54986282 -2 - chr13 55062945 55062971 chr13,55062689,55062971,-,AluJr,SINE,Alu,-18,294,1,55062671,55062971 -1 - chr13 55554861 55554912 chr13,55554734,55554912,+,UCON12A,Unknown,Unknown,159,333,-48,55554576,55554960 -4 + chr13 55583490 55583524 chr13,55580558,55583635,-,HERVH-int,LTR,ERV1,-4718,2995,1,55575840,55583635 +1 - chr13 58206942 58207219 chr13,58206916,58207219,-,AluY,SINE,Alu,-8,303,1,58206908,58207219 -2 - chr13 58207219 58208150 chr13,58207219,58208150,-,L2a,LINE,L2,-30,3396,2360,58207189,58210509 -6 - chr13 58208163 58208355 chr13,58208163,58208355,-,MIR,SINE,MIR,0,262,64,58208163,58208418 -6 - chr13 58208394 58208812 chr13,58208394,58208812,-,L2a,LINE,L2,-1077,2342,1806,58207317,58210617 -6 - chr13 58208863 58208972 chr13,58208863,58208972,-,L2a,LINE,L2,-1822,1597,1472,58207041,58210443 -6 - chr13 58209028 58209483 chr13,58209028,58209773,-,MER4E,LTR,ERV1,0,766,1,58209028,58209773 -5 - chr13 58215626 58215683 chr13,58214139,58218065,+,L1MB5,LINE,L1,336,4635,-2009,58213804,58220074 -3 + chr13 58221137 58221268 chr13,58220972,58222047,+,L2c,LINE,L2,1995,3141,-246,58218978,58222293 -3 + chr13 58221866 58221928 chr13,58220972,58222047,+,L2c,LINE,L2,1995,3141,-246,58218978,58222293 -3 + chr13 58232876 58233117 chr13,58232876,58233812,+,L1MC3,LINE,L1,6640,7584,-201,58226237,58234013 -1 + chr13 60012812 60012858 chr13,60012812,60012921,+,Tigger12c,DNA,TcMar-Tigger,32,142,-592,60012781,60013513 +4 + chr13 60144698 60144863 chr13,60144418,60144964,+,MLT1O,LTR,ERVL-MaLR,5,542,0,60144414,60144964 +1 + chr13 60730309 60730334 chr13,60730309,60730334,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,60730309,60730334 +6 + chr13 60730788 60730994 chr13,60730788,60730994,+,L1M4,LINE,L1,4244,4448,-1698,60726545,60732692 +6 + chr13 60730986 60731206 chr13,60730986,60731206,+,L1ME3G,LINE,L1,595,852,-72,60730392,60731278 +6 + chr13 60731290 60731406 chr13,60731290,60731406,+,L1ME4a,LINE,L1,5959,6080,-44,60725332,60731450 +6 + chr13 60733407 60733600 chr13,60733407,60733815,-,Tigger15a,DNA,TcMar-Tigger,-165,550,106,60733242,60733920 -5 - chr13 60917001 60917062 chr13,60916966,60917062,-,LTR79,LTR,ERVL,-55,472,373,60916911,60917434 -1 - chr13 60919813 60920115 chr13,60919730,60920115,-,MLT1A1,LTR,ERVL-MaLR,-1,504,1,60919729,60920115 -2 - chr13 60940462 60940762 chr13,60940462,60940762,+,LTR88a,LTR,Gypsy?,365,664,-152,60940098,60940914 +6 + chr13 60940869 60941234 chr13,60940869,60941234,-,MER21B,LTR,ERVL,0,868,517,60940869,60941750 -6 - chr13 60941234 60941768 chr13,60941234,60941900,+,MER50B,LTR,ERV1,1,697,0,60941234,60941900 +5 + chr13 61427493 61427544 chr13,61427460,61427544,+,MIRb,SINE,MIR,131,217,-51,61427330,61427595 -4 + chr13 62003793 62004114 chr13,62003793,62004114,+,L1M4,LINE,L1,2200,2543,-4197,62001594,62008311 -6 + chr13 62029259 62029330 chr13,62029221,62029330,-,MIRb,SINE,MIR,-131,137,23,62029090,62029352 +4 - chr13 62029501 62029548 chr13,62029501,62029586,+,MIRb,SINE,MIR,39,124,-144,62029463,62029730 -1 + chr13 62212577 62212615 chr13,62211749,62212615,-,LTR12D,LTR,ERV1,0,1254,1,62211749,62212615 -1 - chr13 62321986 62322157 chr13,62321986,62322157,+,MER5A1,DNA,hAT-Charlie,1,166,0,62321986,62322157 +6 + chr13 62328756 62328833 chr13,62328654,62329127,+,L1MC5,LINE,L1,8484,8968,-336,62320171,62329463 +5 + chr13 62731860 62731931 chr13,62731793,62731931,-,L1ME2z,LINE,L1,-4629,1613,1473,62727164,62733403 +5 - chr13 63052273 63052408 chr13,63052246,63052545,-,AluSx,SINE,Alu,-13,299,1,63052233,63052545 -3 - chr13 63097340 63097608 chr13,63097159,63097608,+,MLT1C,LTR,ERVL-MaLR,1,463,-4,63097159,63097612 +2 + chr13 63097671 63097797 chr13,63097671,63098011,+,L2a,LINE,L2,2776,3143,-283,63094896,63098294 +5 + chr13 63194490 63194531 chr13,63194345,63194578,+,L1MEd,LINE,L1,4821,5061,-1085,63189525,63195663 -3 + chr13 63264211 63264275 chr13,63263716,63264283,+,LTR12,LTR,ERV1,1,592,-234,63263716,63264517 -3 + chr13 63327335 63327355 chr13,63327335,63327712,+,L2a,LINE,L2,2610,2996,-423,63324726,63328135 -2 + chr13 63328054 63328094 chr13,63328014,63328294,+,MLT1H1,LTR,ERVL-MaLR,1,299,-280,63328014,63328574 -1 + chr13 63667697 63667789 chr13,63667697,63667789,-,MLT1J,LTR,ERVL-MaLR,-74,438,350,63667623,63668138 +6 - chr13 63687402 63687555 chr13,63686851,63687580,+,LTR17,LTR,ERV1,1,780,0,63686851,63687580 -3 + chr13 63714352 63714375 chr13,63714192,63714485,+,AluSq2,SINE,Alu,1,292,-21,63714192,63714506 -3 + chr13 63737909 63738018 chr13,63737818,63738351,-,HERVE-int,LTR,ERV1,-4034,3779,3250,63733784,63741600 +1 - chr13 63747503 63747769 chr13,63747503,63747769,+,Tigger3,DNA,TcMar-Tigger,2468,2743,-286,63745036,63748055 +6 + chr13 63747769 63747805 chr13,63747769,63747805,+,(TTA)n,Simple_repeat,Simple_repeat,1,37,0,63747769,63747805 +6 + chr13 63747805 63748085 chr13,63747805,63748085,+,Tigger3,DNA,TcMar-Tigger,2744,3028,-1,63745062,63748086 +1 + chr13 63748255 63748397 chr13,63748255,63748458,-,MIRb,SINE,MIR,-17,251,47,63748238,63748504 -4 - chr13 63750733 63751055 chr13,63750733,63751055,+,LTR41B,LTR,ERVL,435,758,0,63750299,63751055 +6 + chr13 63828840 63829152 chr13,63828800,63829194,-,LTR41B,LTR,ERVL,0,758,393,63828800,63829586 +5 - chr13 63831454 63831595 chr13,63831392,63831595,+,MIRb,SINE,MIR,47,251,-17,63831346,63831612 -4 + chr13 63831765 63831852 chr13,63831765,63832045,-,Tigger3,DNA,TcMar-Tigger,0,3029,2745,63831765,63834789 +1 - chr13 63837630 63838031 chr13,63837630,63838050,+,L1M4b,LINE,L1,208,603,-6264,63837423,63844314 -1 + chr13 63839080 63839225 chr13,63839080,63839676,+,HERVE-int,LTR,ERV1,3251,3843,-3970,63835830,63843646 -2 + chr13 63839749 63840345 chr13,63839745,63840345,+,HERVE-int,LTR,ERV1,3249,3846,-3967,63836497,63844312 -4 + chr13 63840355 63840839 chr13,63840355,63840839,+,L1M4b,LINE,L1,295,735,-6132,63840061,63846971 -6 + chr13 63840704 63841192 chr13,63840704,63841192,-,L1MDa,LINE,L1,-5661,972,482,63835043,63841673 +6 - chr13 63841519 63841623 chr13,63841519,63842116,+,HERVE-int,LTR,ERV1,3249,3846,-3967,63838271,63846083 -2 + chr13 63843314 63843845 chr13,63843244,63843845,+,HERVE-int,LTR,ERV1,3249,3846,-3967,63839996,63847812 -1 + chr13 63986674 63987039 chr13,63986674,63987047,-,L1PA4,LINE,L1,-295,5860,5488,63986379,63992534 +2 - chr13 63990096 63990200 chr13,63990069,63990304,+,MIR,SINE,MIR,3,236,-26,63990067,63990330 -3 + chr13 64002385 64002409 chr13,64001990,64002576,+,L1MC5,LINE,L1,8137,8754,-550,63993854,64003126 -3 + chr13 64003348 64003465 chr13,64003196,64003494,+,AluSz,SINE,Alu,7,304,-8,64003190,64003502 -3 + chr13 64075242 64075752 chr13,64074921,64075752,-,MER52A,LTR,ERV1,0,1755,937,64074921,64076688 +4 - chr13 64075759 64076011 chr13,64075759,64076092,-,MER52A,LTR,ERV1,-1435,320,1,64074324,64076092 +1 - chr13 65866174 65866243 chr13,65865994,65866261,+,ERV3-16A3_I-int,LTR,ERVL,4788,5062,-164,65861207,65866425 +1 + chr13 65878071 65878171 chr13,65878071,65878171,-,UCON69,DNA,hAT?,-186,300,188,65877885,65878358 -6 - chr13 66825188 66825208 chr13,66825188,66825208,+,(AT)n,Simple_repeat,Simple_repeat,1,20,0,66825188,66825208 +6 + chr13 66825208 66825227 chr13,66825208,66825227,+,(TTC)n,Simple_repeat,Simple_repeat,1,19,0,66825208,66825227 +6 + chr13 66880082 66880120 chr13,66880082,66880120,-,MamRTE1,LINE,RTE-BovB,-2519,1293,1256,66877563,66881375 -6 - chr13 66880087 66880140 chr13,66880087,66880140,+,X6A_LINE,LINE,CR1,427,480,-600,66879661,66880740 +6 + chr13 66996222 66996281 chr13,66996195,66996478,-,L2a,LINE,L2,-20,3406,3120,66996175,66999597 -3 - chr13 67379551 67379976 chr13,67379550,67380147,+,LTR1B,LTR,ERV1,1,608,-216,67379550,67380363 +5 + chr13 69222346 69222417 chr13,69221625,69222417,+,LTR17,LTR,ERV1,1,780,0,69221625,69222417 +1 + chr13 69222417 69222448 chr13,69222417,69225336,+,HERV17-int,LTR,ERV1,1,3055,-5571,69222417,69230907 +4 + chr13 69275182 69275264 chr13,69275182,69275832,-,ERVL-E-int,LTR,ERVL,-2580,3087,2415,69272602,69278246 -4 - chr13 69291627 69291903 chr13,69291398,69291903,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,69291398,69291903 +2 + chr13 69292051 69292154 chr13,69292051,69292334,-,L1MA8,LINE,L1,-1,6290,5999,69292050,69298332 -5 - chr13 69321345 69321358 chr13,69321203,69321358,-,L1ME4a,LINE,L1,-255,5869,5705,69320948,69327062 -2 - chr13 69321359 69321532 chr13,69321359,69321532,+,FAM,SINE,Alu,1,167,-18,69321359,69321550 +6 + chr13 69321569 69321586 chr13,69321569,69321586,+,(AT)n,Simple_repeat,Simple_repeat,1,17,0,69321569,69321586 +6 + chr13 70107434 70107483 chr13,70107434,70107483,+,GA-rich,Low_complexity,Low_complexity,1,49,0,70107434,70107483 +6 + chr13 70115141 70115298 chr13,70115058,70115449,-,MSTD,LTR,ERVL-MaLR,0,396,1,70115058,70115449 -3 - chr13 70131217 70131321 chr13,70131217,70131321,+,L2a,LINE,L2,2628,2736,-683,70128590,70132004 +6 + chr13 70131457 70131546 chr13,70131457,70131900,+,L2a,LINE,L2,2918,3416,-10,70128540,70131910 +5 + chr13 70139351 70139383 chr13,70139351,70139383,+,(TAC)n,Simple_repeat,Simple_repeat,1,32,0,70139351,70139383 +6 + chr13 70139383 70139429 chr13,70139383,70139429,+,(CTG)n,Simple_repeat,Simple_repeat,1,46,0,70139383,70139429 +5 + chr13 71015141 71015248 chr13,71014819,71015318,-,MER41A,LTR,ERV1,-35,519,1,71014784,71015318 -1 - chr13 71167710 71168344 chr13,71167710,71168344,+,Tigger13a,DNA,TcMar-Tigger,4,708,-63,71167707,71168407 +6 + chr13 71168404 71168417 chr13,71168404,71168443,+,(TTGTTA)n,Simple_repeat,Simple_repeat,1,39,0,71168404,71168443 +5 + chr13 73564247 73564302 chr13,73564247,73564324,+,L2b,LINE,L2,3296,3371,-4,73560952,73564328 +4 + chr13 73587428 73587445 chr13,73587428,73587552,-,LTR88a,LTR,Gypsy?,-411,405,279,73587017,73587830 -4 - chr13 73587971 73588070 chr13,73587971,73588108,-,L1M5,LINE,L1,-340,5784,5638,73587631,73593745 -5 - chr13 74231457 74231557 chr13,74231443,74231557,-,MIRc,SINE,MIR,-139,129,11,74231304,74231567 -1 - chr13 74257439 74257739 chr13,74257439,74257739,+,MamGypLTR1d,LTR,Gypsy,481,800,-13,74256959,74257752 +6 + chr13 74258155 74258204 chr13,74258155,74258204,+,(TG)n,Simple_repeat,Simple_repeat,1,49,0,74258155,74258204 +6 + chr13 74258283 74258450 chr13,74258283,74258450,+,MIR3,SINE,MIR,35,204,-4,74258249,74258454 +6 + chr13 74258792 74259226 chr13,74258792,74259226,-,LTR16C,LTR,ERVL,-14,481,1,74258778,74259226 -6 - chr13 74259871 74259931 chr13,74259871,74259931,+,L2a,LINE,L2,3352,3417,-9,74256520,74259940 +6 + chr13 74413305 74414829 chr13,74413305,74414829,+,MER52A,LTR,ERV1,1,1755,0,74413305,74414829 -6 + chr13 74418772 74418842 chr13,74418685,74418842,+,LTR81A,LTR,Gypsy,53,223,-1127,74418633,74419969 -4 + chr13 74419173 74419228 chr13,74419156,74419274,+,MamGypLTR2c,LTR,Gypsy,296,410,-658,74418861,74419932 +1 + chr13 74419443 74419539 chr13,74419419,74419693,-,AluJb,SINE,Alu,-34,278,1,74419385,74419693 -3 - chr13 74426100 74426282 chr13,74426100,74426282,-,LTR12C,LTR,ERV1,-1395,184,3,74424705,74426284 -6 - chr13 74426326 74426418 chr13,74426326,74432354,+,L1HS,LINE,L1,130,6155,0,74426197,74432354 +4 + chr13 74435033 74435134 chr13,74435033,74435134,+,MIRc,SINE,MIR,164,268,0,74434870,74435134 +6 + chr13 74551189 74551232 chr13,74551189,74551465,+,MLT1J-int,LTR,ERVL-MaLR,105,394,-993,74551085,74552458 +4 + chr13 74552525 74552817 chr13,74552525,74552817,+,MER2,DNA,TcMar-Tigger,29,344,-1,74552497,74552818 +1 + chr13 74552819 74552903 chr13,74552819,74552976,+,MLT1J-int,LTR,ERVL-MaLR,1249,1386,-1,74551571,74552977 +1 + chr13 74555403 74555560 chr13,74555403,74555560,-,UCON31,Unknown,Unknown,-205,249,94,74555198,74555653 -5 - chr13 74556482 74556710 chr13,74556482,74556710,+,MIRc,SINE,MIR,37,268,0,74556446,74556710 +1 + chr13 74565169 74565263 chr13,74564859,74565263,-,L1MC5a,LINE,L1,-142,2635,2238,74564717,74567500 -2 - chr13 74565278 74565445 chr13,74565278,74565651,-,L1MC5a,LINE,L1,-1288,1489,1072,74563990,74566722 -5 - chr13 75251748 75251798 chr13,75251550,75251798,-,AluJr,SINE,Alu,0,312,65,75251550,75251862 -2 - chr13 75375511 75375688 chr13,75375461,75375719,-,MLT1J,LTR,ERVL-MaLR,-7,505,238,75375454,75375956 +5 - chr13 75375851 75375996 chr13,75375802,75375996,-,MLT1J,LTR,ERVL-MaLR,-300,212,7,75375502,75376002 +4 - chr13 75549773 75549789 chr13,75549746,75549789,+,(GGC)n,Simple_repeat,Simple_repeat,1,43,0,75549746,75549789 +1 + chr13 75618770 75618880 chr13,75616719,75618880,-,L1MA3,LINE,L1,-5247,2318,19,75611472,75618898 +4 - chr13 75631271 75631321 chr13,75631017,75631321,-,AluSz,SINE,Alu,-3,309,1,75631014,75631321 -1 - chr13 75631321 75631413 chr13,75631321,75631413,-,L1ME4a,LINE,L1,-295,5829,5738,75631026,75637150 -6 - chr13 75631450 75631802 chr13,75631450,75631802,-,LTR16A,LTR,ERVL,-2,449,60,75631448,75631861 -6 - chr13 75631885 75632031 chr13,75631885,75632031,-,L1ME4a,LINE,L1,-440,5684,5534,75631445,75637564 -6 - chr13 75806838 75807120 chr13,75806838,75807120,+,AluSx1,SINE,Alu,1,283,-29,75806838,75807149 +5 + chr13 75876886 75876965 chr13,75876786,75877036,-,MIRb,SINE,MIR,-10,258,2,75876776,75877037 -1 - chr13 75932413 75932485 chr13,75932413,75932485,+,MIRb,SINE,MIR,141,232,-36,75932273,75932521 -6 + chr13 75932875 75932961 chr13,75932875,75932961,-,UCON41,Unknown,Unknown,-13,126,36,75932862,75932996 +6 - chr13 75933010 75933254 chr13,75933010,75933254,+,L1MC,LINE,L1,4111,4368,-1778,75928900,75935032 -6 + chr13 75933555 75933718 chr13,75933555,75933718,+,MLT1A0,LTR,ERVL-MaLR,196,365,0,75933360,75933718 -6 + chr13 75933736 75933961 chr13,75933736,75933961,+,L1MC4,LINE,L1,5458,5703,-488,75928279,75934449 -6 + chr13 75934077 75934133 chr13,75934077,75934133,+,(AT)n,Simple_repeat,Simple_repeat,1,56,0,75934077,75934133 -6 + chr13 75934826 75934918 chr13,75934826,75934918,-,L2c,LINE,L2,-16,3359,3279,75934810,75938196 +6 - chr13 76888298 76888993 chr13,76888298,76888993,+,L2a,LINE,L2,2606,3415,-11,76885693,76889004 +6 + chr13 76889003 76889357 chr13,76889003,76889357,-,L2a,LINE,L2,-7,3419,3021,76888996,76892377 -6 - chr13 76890079 76890801 chr13,76890079,76890801,+,MER44C,DNA,TcMar-Tigger,1,733,0,76890079,76890801 +6 + chr13 76890823 76890876 chr13,76890823,76890876,+,GA-rich,Low_complexity,Low_complexity,1,54,0,76890823,76890876 +6 + chr13 76890900 76890978 chr13,76890900,76890978,+,MIRc,SINE,MIR,188,265,-3,76890713,76890981 +6 + chr13 77028164 77028467 chr13,77028164,77028467,+,AluJr4,SINE,Alu,1,292,-20,77028164,77028487 +6 + chr13 77075514 77075568 chr13,77075509,77075568,+,L2b,LINE,L2,3107,3165,-210,77072403,77075778 +1 + chr13 77077497 77077602 chr13,77077497,77077661,-,MIRb,SINE,MIR,-34,234,40,77077463,77077700 -5 - chr13 77080914 77080956 chr13,77080659,77080956,+,AluSz,SINE,Alu,1,298,-14,77080659,77080970 -4 + chr13 77599841 77600020 chr13,77599841,77600027,+,MIR3,SINE,MIR,11,190,-18,77599831,77600045 -2 + chr13 77939162 77939379 chr13,77938979,77939379,-,LTR7,LTR,ERV1,-2,448,1,77938977,77939379 +5 - chr13 77939389 77939560 chr13,77939389,77939560,+,MIRb,SINE,MIR,59,241,-27,77939331,77939587 -6 + chr13 77939562 77939644 chr13,77939562,77939644,+,MIRc,SINE,MIR,156,252,-16,77939407,77939660 -6 + chr13 77939715 77939993 chr13,77939715,77940039,+,AluSc,SINE,Alu,1,309,0,77939715,77940039 -2 + chr13 78037196 78037250 chr13,78037141,78037499,-,L2c,LINE,L2,-228,3159,2790,78036913,78040288 -5 - chr13 78053478 78053595 chr13,78053338,78053681,+,MER39,LTR,ERV1,357,707,0,78052982,78053681 +5 + chr13 78054845 78054994 chr13,78054705,78054994,-,L1M4b,LINE,L1,-5528,1339,1015,78049177,78056008 -1 - chr13 78055000 78055064 chr13,78055000,78055239,-,LTR12C,LTR,ERV1,0,1579,1340,78055000,78056578 -1 - chr13 78055155 78055195 chr13,78055000,78055239,-,LTR12C,LTR,ERV1,0,1579,1340,78055000,78056578 -1 - chr13 78189651 78189696 chr13,78189651,78189832,+,ERVL-E-int,LTR,ERVL,2708,2890,-2777,78186944,78192609 +4 + chr13 78275775 78275866 chr13,78275775,78275946,-,MIRb,SINE,MIR,-22,246,64,78275753,78276009 +2 - chr13 78363572 78363731 chr13,78363215,78363806,+,MLT1E3,LTR,ERVL-MaLR,1,624,0,78363215,78363806 +5 + chr13 78578946 78579145 chr13,78578946,78579145,-,MIR,SINE,MIR,-35,227,2,78578911,78579146 -6 - chr13 78596283 78596312 chr13,78596283,78596312,+,(CAGG)n,Simple_repeat,Simple_repeat,1,32,0,78596283,78596312 +6 + chr13 78596533 78596572 chr13,78596533,78596572,+,(GAGCTGC)n,Simple_repeat,Simple_repeat,1,43,0,78596533,78596572 +6 + chr13 78599076 78599111 chr13,78599076,78599111,+,(TTTG)n,Simple_repeat,Simple_repeat,1,35,0,78599076,78599111 +6 + chr13 78599515 78599575 chr13,78599515,78599575,-,OldhAT1,DNA,hAT-Ac,-576,2272,2213,78598939,78601787 -6 - chr13 78616120 78616183 chr13,78616120,78616183,-,OldhAT1,DNA,hAT-Ac,-1672,1176,1113,78614448,78617295 -6 - chr13 79406597 79406673 chr13,79406597,79406673,+,Charlie17,DNA,hAT-Charlie,2834,2914,-2,79403764,79406675 +6 + chr13 79412759 79412907 chr13,79412759,79413072,+,AluSq,SINE,Alu,1,303,-10,79412759,79413082 +4 + chr13 79415111 79415354 chr13,79415025,79415354,-,MLT1I,LTR,ERVL-MaLR,0,411,68,79415025,79415421 -2 - chr13 79417835 79417916 chr13,79417783,79417951,-,MIR,SINE,MIR,-33,229,8,79417750,79417958 -5 - chr13 79420760 79420815 chr13,79420698,79420826,-,MIR3,SINE,MIR,-15,193,67,79420683,79420892 -3 - chr13 79421987 79422386 chr13,79421880,79422386,-,MLT1F1,LTR,ERVL-MaLR,0,569,5,79421880,79422390 -2 - chr13 79422483 79422698 chr13,79422483,79422698,-,MER63D,DNA,hAT-Blackjack,0,1061,834,79422483,79423531 -6 - chr13 79422686 79423101 chr13,79422686,79423101,-,MER63D,DNA,hAT-Blackjack,-614,447,1,79422072,79423101 -5 - chr13 79423104 79423405 chr13,79423104,79423405,+,L1MEj,LINE,L1,435,797,-1363,79422670,79424768 +6 + chr13 79423569 79423782 chr13,79423569,79423782,+,AluSz6,SINE,Alu,1,210,-102,79423569,79423884 +6 + chr13 79423811 79423841 chr13,79423811,79423841,+,(CAA)n,Simple_repeat,Simple_repeat,1,31,0,79423811,79423841 +6 + chr13 79805407 79805539 chr13,79805407,79805539,-,MIRb,SINE,MIR,-94,174,34,79805313,79805572 -6 - chr13 79805673 79805685 chr13,79805673,79805733,-,MIR3,SINE,MIR,-22,186,127,79805651,79805859 -5 - chr13 79872660 79872696 chr13,79872660,79872845,-,LTR90B,LTR,LTR,-391,405,209,79872269,79873053 -4 - chr13 79914716 79914835 chr13,79914674,79914835,-,MIR,SINE,MIR,-89,173,5,79914585,79914839 -2 - chr13 81043967 81044297 chr13,81043878,81044297,-,MSTA,LTR,ERVL-MaLR,0,428,1,81043878,81044297 -2 - chr13 81225865 81225931 chr13,81225780,81225931,+,LTR88b,LTR,Gypsy?,674,837,0,81225107,81225931 -5 + chr13 81226544 81226670 chr13,81226544,81226670,-,L1MA9,LINE,L1,-245,6057,5915,81226299,81232584 +6 - chr13 81226671 81226983 chr13,81226671,81227228,-,LTR12_,LTR,ERV1,0,688,18,81226671,81227245 +1 - chr13 81250438 81250485 chr13,81249998,81250622,+,MLT2B3,LTR,ERVL,119,717,0,81249880,81250622 +1 + chr13 81279797 81279845 chr13,81279695,81280064,+,Tigger2,DNA,TcMar-Tigger,2303,2690,-28,81277393,81280092 +3 + chr13 81299195 81299272 chr13,81299195,81299426,-,MSTD,LTR,ERVL-MaLR,-92,304,80,81299103,81299505 -4 - chr13 84562364 84562463 chr13,84562308,84562483,-,AluSx,SINE,Alu,-2,310,136,84562306,84562618 -1 - chr13 84562609 84562676 chr13,84562483,84562728,-,L1M5,LINE,L1,-1879,4267,4012,84560604,84566739 -3 - chr13 84562819 84562946 chr13,84562819,84562946,+,MLT1B,LTR,ERVL-MaLR,240,374,0,84562580,84562946 +6 + chr13 84562946 84563236 chr13,84562946,84563400,-,L1M5,LINE,L1,-2351,3795,3305,84560595,84566704 -5 - chr13 85363601 85364056 chr13,85362954,85364056,+,LTR12D,LTR,ERV1,1,1254,0,85362954,85364056 +1 + chr13 85364083 85364095 chr13,85364083,85364203,-,L3,LINE,CR1,-29,4070,3954,85364054,85368156 -4 - chr13 85544469 85544570 chr13,85544469,85544736,+,MLT1A0,LTR,ERVL-MaLR,96,362,-3,85544374,85544739 +5 + chr13 86060813 86060860 chr13,86060473,86061683,-,ERV3-16A3_I-int,LTR,ERVL,-1621,3605,2378,86058852,86064060 -1 - chr13 86072886 86072926 chr13,86072886,86073047,-,L1ME3C,LINE,L1,-2,6121,5967,86072884,86079013 -4 - chr13 86935661 86935770 chr13,86935541,86935824,+,LTR45B,LTR,ERV1,3,312,-177,86935539,86936001 +1 + chr13 86936576 86936722 chr13,86936522,86936722,-,LTR33,LTR,ERVL,-303,212,12,86936219,86936733 -5 - chr13 87427247 87427390 chr13,87427247,87427390,+,MLT1J,LTR,ERVL-MaLR,94,239,-273,87427154,87427663 -6 + chr13 87444671 87445130 chr13,87444671,87445354,+,L1MC3,LINE,L1,7073,7785,0,87437599,87445354 -2 + chr13 87447096 87447235 chr13,87447062,87447291,+,MLT2F,LTR,ERVL,194,425,-238,87446869,87447529 -1 + chr13 87460924 87460969 chr13,87460919,87461063,+,L2a,LINE,L2,3267,3403,-23,87457653,87461086 -1 + chr13 87511366 87511429 chr13,87511112,87511429,+,L3,LINE,CR1,3736,4068,-31,87507377,87511460 -4 + chr13 87608402 87608584 chr13,87608402,87608584,+,MLT1J,LTR,ERVL-MaLR,9,198,-314,87608394,87608898 -6 + chr13 87609207 87609234 chr13,87609207,87609547,-,AluSx,SINE,Alu,0,312,1,87609207,87609547 +1 - chr13 87612273 87612368 chr13,87612246,87612368,-,Charlie1,DNA,hAT-Charlie,-2,2779,2656,87612244,87615023 +5 - chr13 87612368 87612484 chr13,87612368,87612659,+,AluY,SINE,Alu,1,278,-33,87612368,87612692 -2 + chr13 87803010 87803195 chr13,87802835,87803195,-,Tigger2a,DNA,TcMar-Tigger,-97,337,1,87802738,87803195 +4 - chr13 87803195 87803253 chr13,87803195,87803253,+,L2c,LINE,L2,3222,3288,-87,87799974,87803340 -6 + chr13 87808523 87808541 chr13,87808523,87808541,+,(TG)n,Simple_repeat,Simple_repeat,1,18,0,87808523,87808541 -6 + chr13 87809107 87809426 chr13,87809107,87809426,-,L2a,LINE,L2,-2,3424,3082,87809105,87812507 +6 - chr13 87810094 87810239 chr13,87810094,87810239,+,MIRb,SINE,MIR,100,247,-21,87809995,87810260 -6 + chr13 87810284 87810338 chr13,87810284,87810338,+,(TTATTA)n,Simple_repeat,Simple_repeat,1,55,0,87810284,87810338 -6 + chr13 87810378 87810512 chr13,87810378,87810512,-,HUERS-P2-int,LTR,ERV1,-2961,127,1,87807417,87810512 +6 - chr13 87810512 87811232 chr13,87810512,87811351,-,LTR1A2,LTR,ERV1,0,837,3,87810512,87811353 +1 - chr13 88212356 88212439 chr13,88212356,88212462,+,MER92B,LTR,ERV1,520,632,-4,88211837,88212466 +4 + chr13 88234323 88234418 chr13,88233069,88235040,+,Cheshire,DNA,hAT-Charlie,7,2022,-398,88233063,88235438 +3 + chr13 88540864 88541110 chr13,88539482,88541110,+,MSTC-int,LTR,ERVL-MaLR,2,1735,0,88539481,88541110 +1 + chr13 88541112 88541443 chr13,88541112,88541520,+,MSTC,LTR,ERVL-MaLR,3,426,-2,88541110,88541522 +4 + chr13 88542270 88542357 chr13,88542152,88542357,-,MIR,SINE,MIR,0,262,67,88542152,88542423 -1 - chr13 88545343 88545476 chr13,88544832,88545476,-,L2,LINE,L2,-556,2863,2163,88544276,88547638 -2 - chr13 88627197 88627279 chr13,88627197,88627279,-,MER81,DNA,hAT-Blackjack,-1,113,32,88627196,88627310 -6 - chr13 88627306 88627343 chr13,88627306,88627343,+,(AC)n,Simple_repeat,Simple_repeat,1,37,0,88627306,88627343 +6 + chr13 88627375 88627488 chr13,88627375,88627488,+,L1MC4,LINE,L1,7922,8035,-7,88619454,88627495 +6 + chr13 88627617 88628093 chr13,88627617,88628093,+,L2c,LINE,L2,2945,3387,0,88624673,88628093 +6 + chr13 89215974 89216003 chr13,89215816,89216003,+,AluSx1,SINE,Alu,1,187,-125,89215816,89216128 -4 + chr13 89216005 89216141 chr13,89216005,89216165,+,AluSx1,SINE,Alu,145,303,-9,89215861,89216174 -2 + chr13 89219571 89219669 chr13,89219359,89219669,-,AluY,SINE,Alu,-1,310,1,89219358,89219669 +4 - chr13 89273203 89273362 chr13,89272925,89273549,-,LTR101_Mam,LTR,ERVL,-201,628,16,89272724,89273564 -1 - chr13 89279667 89279690 chr13,89279203,89279690,+,LTR53B,LTR,ERVL,1,533,0,89279203,89279690 +2 + chr13 89280018 89280052 chr13,89280018,89280052,+,(AC)n,Simple_repeat,Simple_repeat,1,34,0,89280018,89280052 +6 + chr13 89477621 89477709 chr13,89477621,89477709,-,L2c,LINE,L2,0,3387,3298,89477621,89481006 +6 - chr13 89477720 89477901 chr13,89477720,89477901,-,MER58D,DNA,hAT-Charlie,-1,385,208,89477719,89478108 +6 - chr13 89500374 89500432 chr13,89500249,89500432,-,L1MEg,LINE,L1,-5777,1556,1361,89494472,89501792 +4 - chr13 89500455 89500509 chr13,89500455,89500684,-,L1MEg,LINE,L1,-5966,269,48,89494489,89500731 +1 - chr13 89551233 89551274 chr13,89550569,89551274,+,LTR12_,LTR,ERV1,1,688,0,89550569,89551274 +1 + chr13 89551201 89551274 chr13,89550569,89551274,+,LTR12_,LTR,ERV1,1,688,0,89550569,89551274 -1 + chr13 89552224 89552304 chr13,89552224,89552304,+,MER91A,DNA,hAT-Tip100,116,196,0,89552109,89552304 +6 + chr13 90060342 90060418 chr13,90060342,90060418,+,Charlie7a,DNA,hAT-Charlie,170,249,-23,90060173,90060441 -6 + chr13 90060588 90060608 chr13,90060588,90060608,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,90060588,90060608 -6 + chr13 90079127 90079255 chr13,90079109,90079255,+,L2,LINE,L2,2578,2733,-686,90076532,90079941 -4 + chr13 90105947 90106119 chr13,90105725,90106119,-,LTR16B2,LTR,ERVL,-1,461,8,90105724,90106126 +4 - chr13 90106583 90107372 chr13,90106363,90107372,-,ERV3-16A3_I-int,LTR,ERVL,-272,4954,3872,90106091,90111243 +4 - chr13 90107372 90107789 chr13,90107372,90107789,+,LTR54B,LTR,ERV1,1,497,-1,90107372,90107790 -6 + chr13 90107789 90107807 chr13,90107789,90107807,-,ERV3-16A3_I-int,LTR,ERVL,-1355,3871,3854,90106434,90111660 +6 - chr13 90108073 90108576 chr13,90108073,90108576,+,MER70C,LTR,ERVL,1,500,-31,90108073,90108607 -6 + chr13 90108609 90108661 chr13,90108609,90108891,-,LTR16B2,LTR,ERVL,-95,367,65,90108514,90108955 +2 - chr13 90118773 90118887 chr13,90118354,90118887,-,LTR19B,LTR,ERV1,-1,579,1,90118353,90118887 +4 - chr13 90119016 90119328 chr13,90119016,90119328,-,AluSc8,SINE,Alu,-3,308,2,90119013,90119329 +6 - chr13 90119359 90119719 chr13,90119359,90119759,-,MLT1B,LTR,ERVL-MaLR,-7,383,1,90119352,90119759 +1 - chr13 90892037 90892068 chr13,90892037,90892068,+,GA-rich,Low_complexity,Low_complexity,1,31,0,90892037,90892068 -6 + chr13 90892099 90892407 chr13,90892099,90892407,-,L1P2,LINE,L1,-4276,2223,1915,90887823,90894321 +6 - chr13 90892397 90892441 chr13,90892397,90894253,+,L1P2,LINE,L1,4,1916,-4583,90892394,90898836 -2 + chr13 90893387 90893540 chr13,90892397,90894253,+,L1P2,LINE,L1,4,1916,-4583,90892394,90898836 -3 + chr13 90903394 90903510 chr13,90903232,90903533,+,AluSz6,SINE,Alu,1,298,-14,90903232,90903547 -3 + chr13 90911331 90911454 chr13,90911165,90911484,+,AluJr,SINE,Alu,2,311,-1,90911164,90911485 -3 + chr13 91127781 91127858 chr13,91127781,91127889,+,MIR3,SINE,MIR,13,162,-46,91127769,91127935 -2 + chr13 91131223 91131288 chr13,91131093,91131288,+,MLT1D,LTR,ERVL-MaLR,1,179,-448,91131093,91131736 -4 + chr13 91131296 91131379 chr13,91131296,91131379,-,AluJr,SINE,Alu,-227,85,3,91131069,91131381 +1 - chr13 92340397 92340523 chr13,92340396,92340523,-,FLAM_A,SINE,Alu,-20,122,1,92340376,92340523 +4 - chr13 92509513 92509568 chr13,92509477,92509568,+,L2c,LINE,L2,3332,3425,-1,92506146,92509569 +2 + chr13 92705961 92706059 chr13,92705803,92706085,+,AluJo,SINE,Alu,1,279,-33,92705803,92706118 -3 + chr13 94699694 94699889 chr13,94699573,94700079,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,94699573,94700079 +5 - chr13 94701540 94701582 chr13,94701540,94701582,+,G-rich,Low_complexity,Low_complexity,1,43,0,94701540,94701582 -6 + chr13 94713021 94713093 chr13,94713021,94713093,+,(CGCCG)n,Simple_repeat,Simple_repeat,1,74,0,94713021,94713093 +6 + chr13 94714606 94714642 chr13,94714606,94714642,+,(CA)n,Simple_repeat,Simple_repeat,1,36,0,94714606,94714642 +6 + chr13 94960397 94960624 chr13,94960397,94960624,+,MIR,SINE,MIR,1,238,-30,94960397,94960654 +6 + chr13 95479694 95479799 chr13,95479694,95479799,-,MIRb,SINE,MIR,-114,154,44,95479580,95479842 +6 - chr13 95479939 95479962 chr13,95479939,95480297,-,THE1B,LTR,ERVL-MaLR,0,364,2,95479939,95480298 +2 - chr13 95497059 95497125 chr13,95496935,95497150,+,MIR,SINE,MIR,32,261,-1,95496904,95497151 -3 + chr13 95533698 95533715 chr13,95533623,95533715,-,L2c,LINE,L2,-15,3372,3283,95533608,95536997 +4 - chr13 95533829 95533910 chr13,95533829,95534213,+,L2b,LINE,L2,2983,3347,-40,95530847,95534253 -1 + chr13 95648733 95648834 chr13,95648663,95649022,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,95648663,95649022 +5 - chr13 95673132 95673794 chr13,95673132,95673794,-,L1MD3,LINE,L1,-1,7994,7314,95673131,95681107 +6 - chr13 95673794 95674031 chr13,95673794,95674031,+,MLT1D,LTR,ERVL-MaLR,1,247,-258,95673794,95674289 -6 + chr13 95674180 95674357 chr13,95674180,95674357,+,L1M5,LINE,L1,5446,5641,-483,95668735,95674840 -6 + chr13 95674357 95674656 chr13,95674357,95674656,-,AluJr4,SINE,Alu,-10,302,1,95674347,95674656 +6 - chr13 95674656 95674668 chr13,95674656,95674728,+,L1M5,LINE,L1,5642,5715,-409,95669015,95675137 -2 + chr13 95745279 95745398 chr13,95745279,95745398,+,MER65B,LTR,ERV1,1,123,-408,95745279,95745806 +6 + chr13 95745447 95745514 chr13,95745447,95745514,+,L1M2,LINE,L1,481,550,-6299,95744967,95751813 +6 + chr13 96941597 96941799 chr13,96941597,96941943,-,LTR85c,LTR,Gypsy?,-379,444,99,96941218,96942041 +2 - chr13 96949004 96949294 chr13,96949004,96949294,+,AluSc,SINE,Alu,1,290,-19,96949004,96949313 +6 + chr13 96949294 96949533 chr13,96949294,96949533,-,7SK,RNA,RNA,-97,234,1,96949197,96949533 -6 - chr13 96949534 96949584 chr13,96949534,96949754,+,Tigger6b,DNA,TcMar-Tigger,1310,1549,-48,96948225,96949802 +5 + chr13 97172827 97172864 chr13,97172827,97172911,+,L2a,LINE,L2,3313,3406,-20,97169515,97172931 -2 + chr13 97437268 97437352 chr13,97437047,97437352,-,MER33,DNA,hAT-Charlie,0,324,5,97437047,97437356 -1 - chr13 97437366 97437537 chr13,97437366,97437537,+,MIRb,SINE,MIR,89,260,-8,97437278,97437545 +6 + chr13 97939356 97939464 chr13,97939031,97939702,-,L1ME3B,LINE,L1,-259,5983,5255,97938772,97944956 -1 - chr13 98329777 98329867 chr13,98329777,98330334,-,L2a,LINE,L2,-1,3425,2813,98329776,98333146 +2 - chr13 98577829 98577864 chr13,98577829,98577864,+,G-rich,Low_complexity,Low_complexity,1,37,0,98577829,98577864 +6 + chr13 98578551 98578830 chr13,98578551,98578883,+,L1ME4a,LINE,L1,5597,5954,-170,98572955,98579053 +5 + chr13 98833022 98833076 chr13,98833022,98833171,-,Charlie22a,DNA,hAT-Charlie,-20,471,321,98833002,98833491 -4 - chr13 99196447 99196624 chr13,99196447,99196624,-,L2c,LINE,L2,-69,3318,3121,99196378,99199744 +6 - chr13 99197283 99197507 chr13,99197283,99197507,-,MER20,DNA,hAT-Charlie,-1,218,2,99197282,99197508 +6 - chr13 99197512 99197665 chr13,99197512,99197665,-,MER5A1,DNA,hAT-Charlie,-1,165,13,99197511,99197677 +6 - chr13 99499727 99499919 chr13,99499608,99499919,-,AluY,SINE,Alu,0,311,1,99499608,99499919 +5 - chr13 99500395 99500415 chr13,99500348,99500415,-,Charlie4z,DNA,hAT-Charlie,-21,146,79,99500327,99500493 +4 - chr13 99500638 99500656 chr13,99500638,99500656,+,(AC)n,Simple_repeat,Simple_repeat,1,18,0,99500638,99500656 -6 + chr13 99577116 99577150 chr13,99577116,99577150,+,FLAM_A,SINE,Alu,76,113,-29,99577041,99577179 +6 + chr13 99578470 99578639 chr13,99578300,99578711,+,MLT1C,LTR,ERVL-MaLR,13,467,0,99578288,99578711 +3 + chr13 99580322 99580349 chr13,99580322,99580349,-,MLT1O,LTR,ERVL-MaLR,-403,139,113,99579919,99580461 -6 - chr13 99997028 99997068 chr13,99997028,99997068,+,(TG)n,Simple_repeat,Simple_repeat,1,40,0,99997028,99997068 -6 + chr13 100086031 100086305 chr13,100085980,100086305,-,MLT1J2,LTR,ERVL-MaLR,0,448,69,100085980,100086373 +5 - chr13 100086418 100086716 chr13,100086418,100086716,-,AluSg,SINE,Alu,-12,298,1,100086406,100086716 +6 - chr13 100464440 100464450 chr13,100464261,100464450,+,MIRb,SINE,MIR,54,261,-7,100464208,100464457 -5 + chr13 100479547 100479754 chr13,100479336,100479754,-,Tigger2a,DNA,TcMar-Tigger,0,434,1,100479336,100479754 +5 - chr13 100480980 100481015 chr13,100480888,100481276,-,MER44C,DNA,TcMar-Tigger,0,733,297,100480888,100481572 +1 - chr13 100481120 100481157 chr13,100480888,100481276,-,MER44C,DNA,TcMar-Tigger,0,733,297,100480888,100481572 +1 - chr13 100535741 100535814 chr13,100535622,100535814,-,HAL1,LINE,L1,-300,2207,2014,100535322,100537827 +5 - chr13 100536010 100536667 chr13,100536010,100536667,-,HAL1,LINE,L1,-877,1630,839,100535133,100537505 +6 - chr13 100536757 100536892 chr13,100536757,100536892,-,HAL1,LINE,L1,-1952,555,414,100534805,100537305 +6 - chr13 100538042 100538246 chr13,100538042,100538246,-,MIRb,SINE,MIR,-33,235,16,100538009,100538261 -6 - chr13 100538434 100538584 chr13,100538434,100538584,-,L1MB2,LINE,L1,-7,6164,6009,100538427,100544592 -6 - chr13 100538614 100539567 chr13,100538614,100539826,-,L1M3,LINE,L1,-1364,4776,3501,100537250,100543326 -5 - chr13 100539174 100539806 chr13,100538614,100539826,-,L1M3,LINE,L1,-1364,4776,3501,100537250,100543326 +5 - chr13 100708325 100708393 chr13,100708185,100708563,+,MSTA,LTR,ERVL-MaLR,1,425,-3,100708185,100708566 +1 + chr13 101049280 101049314 chr13,101049109,101049314,+,L2a,LINE,L2,3105,3342,-84,101046005,101049398 +2 + chr13 101057330 101057432 chr13,101057330,101057451,+,MIR,SINE,MIR,131,262,0,101057200,101057451 +4 + chr13 102354110 102354222 chr13,102353973,102354753,+,MER4A,LTR,ERV1,3,664,0,102353971,102354753 -3 + chr13 102367539 102367593 chr13,102367044,102367593,-,MLT1F,LTR,ERVL-MaLR,0,548,1,102367044,102367593 -1 - chr13 102367257 102367399 chr13,102367044,102367593,-,MLT1F,LTR,ERVL-MaLR,0,548,1,102367044,102367593 +1 - chr13 102367855 102368045 chr13,102367841,102368206,+,MLT1I,LTR,ERVL-MaLR,67,405,-6,102367775,102368212 +5 + chr13 102393789 102393831 chr13,102393789,102393899,+,MIR3,SINE,MIR,91,202,-6,102393699,102393905 -2 + chr13 102593829 102593873 chr13,102593829,102594284,+,Charlie2b,DNA,hAT-Charlie,2157,2683,-99,102591673,102594383 -1 + chr13 103427593 103427685 chr13,103427593,103427709,-,L2c,LINE,L2,0,3387,3280,103427593,103430988 -5 - chr13 105459663 105459721 chr13,105459663,105459721,+,MIR,SINE,MIR,81,147,-115,105459583,105459836 -6 + chr13 105466187 105466420 chr13,105466120,105466595,-,MLT1G,LTR,ERVL-MaLR,0,591,26,105466120,105466620 +3 - chr13 105489776 105490017 chr13,105489702,105490183,+,MLT1E2,LTR,ERVL-MaLR,1,570,-110,105489702,105490293 -3 + chr13 105505582 105505681 chr13,105505418,105505838,-,MER57A1,LTR,ERV1,0,432,6,105505418,105505843 +1 - chr13 105706099 105706134 chr13,105705997,105706134,-,MIRb,SINE,MIR,-42,226,93,105705955,105706226 -1 - chr13 105706826 105706872 chr13,105706826,105706872,+,(GGCA)n,Simple_repeat,Simple_repeat,1,47,0,105706826,105706872 +6 + chr13 105707714 105707816 chr13,105707708,105707816,+,L2a,LINE,L2,3309,3421,-5,105704400,105707821 +2 + chr13 105729501 105729631 chr13,105729492,105729631,-,MIR,SINE,MIR,-113,149,3,105729379,105729633 -1 - chr13 105729858 105729959 chr13,105729858,105730171,-,L2a,LINE,L2,-79,3347,2998,105729779,105733168 -4 - chr13 105730315 105730458 chr13,105730231,105730538,-,L2,LINE,L2,-556,2863,2540,105729675,105733077 -3 - chr13 105761469 105761821 chr13,105761469,105761821,+,MLT1A,LTR,ERVL-MaLR,4,353,-21,105761466,105761842 +6 + chr13 106376563 106376573 chr13,106376298,106376573,-,AmnSINE1,SINE,5S-Deu-L2,-163,412,108,106376135,106376680 -1 - chr13 106377200 106377284 chr13,106377192,106377284,+,MIRc,SINE,MIR,2,102,-166,106377191,106377450 +2 + chr13 106377284 106377645 chr13,106377284,106377651,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,106377284,106377651 +5 + chr13 106377947 106378130 chr13,106377947,106378130,-,MIR3,SINE,MIR,-7,201,4,106377940,106378133 -6 - chr13 106617810 106617996 chr13,106617446,106617996,-,HERV16-int,LTR,ERVL,-4397,599,7,106613049,106618002 -1 - chr13 106618008 106618033 chr13,106618008,106618404,-,LTR16,LTR,ERVL,0,438,58,106618008,106618461 -4 - chr13 106626722 106627107 chr13,106626722,106627107,-,LTR33,LTR,ERVL,-65,450,14,106626657,106627120 -6 - chr13 106630787 106630927 chr13,106630700,106630927,-,ERV3-16A3_LTR,LTR,ERVL,-167,255,2,106630533,106630928 -2 - chr13 106631327 106631359 chr13,106631327,106631372,+,A-rich,Low_complexity,Low_complexity,1,47,0,106631327,106631372 +5 + chr13 106653916 106653942 chr13,106653841,106653942,-,MIR,SINE,MIR,-92,170,70,106653749,106654011 -1 - chr13 106653946 106654154 chr13,106653946,106654453,-,LTR53,LTR,ERVL,-8,511,1,106653938,106654453 -4 - chr13 106671843 106672009 chr13,106671843,106672009,+,Charlie7,DNA,hAT-Charlie,348,538,-2074,106671496,106674083 +6 + chr13 106773623 106773689 chr13,106773478,106773689,-,MER58A,DNA,hAT-Charlie,0,224,2,106773478,106773690 +5 - chr13 106773748 106774202 chr13,106773748,106774202,+,MLT1D,LTR,ERVL-MaLR,16,471,-34,106773733,106774236 -6 + chr13 106903983 106904099 chr13,106903983,106904144,+,MIR3,SINE,MIR,28,194,-14,106903956,106904158 -1 + chr13 106941950 106942056 chr13,106941723,106942056,-,MER1B,DNA,hAT-Charlie,-4,335,1,106941719,106942056 +5 - chr13 106942291 106942561 chr13,106942291,106942748,+,MLT2D,LTR,ERVL,1,411,-3,106942291,106942751 -1 + chr13 107465984 107466288 chr13,107465931,107466288,-,THE1B,LTR,ERVL-MaLR,0,364,1,107465931,107466288 +5 - chr13 107466288 107466398 chr13,107466288,107466398,-,MLT1A0,LTR,ERVL-MaLR,-260,105,1,107466028,107466398 +6 - chr13 107788385 107788407 chr13,107788385,107788407,+,(TC)n,Simple_repeat,Simple_repeat,1,23,0,107788385,107788407 -6 + chr13 107871408 107871698 chr13,107871408,107871698,-,AluJr,SINE,Alu,-26,286,7,107871382,107871704 -6 - chr13 107872008 107872129 chr13,107872008,107872129,-,MER5A,DNA,hAT-Charlie,0,189,55,107872008,107872183 -6 - chr13 107872638 107873372 chr13,107872638,107873405,+,Kanga2_a,DNA,TcMar-Tc2,5,782,-106,107872634,107873511 +5 + chr13 108267451 108267475 chr13,108267451,108267475,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,108267451,108267475 +6 + chr13 109166636 109166710 chr13,109166606,109166792,+,L1ME1,LINE,L1,5580,5766,-413,109161027,109167205 -3 + chr13 109167019 109167294 chr13,109166794,109167294,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,109166794,109167294 +4 - chr13 109201455 109201483 chr13,109201089,109201603,-,L1MEg2,LINE,L1,-4159,3391,2857,109196930,109204459 +1 - chr13 109269634 109270085 chr13,109269432,109270085,+,HERVH-int,LTR,ERV1,4472,5149,-2564,109264961,109272649 +1 + chr13 109270065 109270304 chr13,109270065,109270304,+,HERVH-int,LTR,ERV1,5588,5819,-1894,109264478,109272198 +6 + chr13 109270302 109270683 chr13,109270302,109270683,+,HERVH-int,LTR,ERV1,7322,7713,0,109262981,109270683 +6 + chr13 109270683 109271116 chr13,109270683,109271116,+,LTR7Y,LTR,ERV1,1,472,0,109270683,109271116 +6 + chr13 109271116 109271310 chr13,109271116,109271310,+,LTR9A1,LTR,ERV1,527,728,0,109270590,109271310 +6 + chr13 109271794 109272374 chr13,109271794,109272374,+,LTR9,LTR,ERV1,2,612,0,109271793,109272374 +6 + chr13 109273139 109273269 chr13,109273139,109273269,+,MIR3,SINE,MIR,54,186,-22,109273086,109273291 +6 + chr13 109273298 109273331 chr13,109273298,109273331,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,36,0,109273298,109273331 +6 + chr13 109311215 109311773 chr13,109310877,109312399,+,SVA_B,Retroposon,SVA,11,1383,0,109310867,109312399 +5 + chr13 109401392 109401641 chr13,109401392,109401704,+,MER61A,LTR,ERV1,5,341,0,109401388,109401704 +5 + chr13 109785836 109785895 chr13,109785836,109785895,+,(GCC)n,Simple_repeat,Simple_repeat,1,62,0,109785836,109785895 +6 + chr13 109805317 109805493 chr13,109805083,109805493,-,L1M5,LINE,L1,-304,5820,5384,109804779,109810876 -1 - chr13 109807057 109807086 chr13,109807004,109807086,+,MLT1K,LTR,ERVL-MaLR,490,569,-26,109806515,109807112 +2 + chr13 109807989 109808005 chr13,109807919,109808005,+,MER58B,DNA,hAT-Charlie,253,338,-3,109807667,109808008 +2 + chr13 109985040 109985362 chr13,109985040,109985362,+,L1ME4a,LINE,L1,5566,5825,-299,109979475,109985661 -6 + chr13 109985584 109985625 chr13,109985584,109985625,+,A-rich,Low_complexity,Low_complexity,1,45,0,109985584,109985625 -6 + chr13 110031101 110031423 chr13,110031054,110031423,-,MLT1B,LTR,ERVL-MaLR,0,390,1,110031054,110031423 +5 - chr13 110053285 110053311 chr13,110053150,110053347,-,MLT1C,LTR,ERVL-MaLR,-256,211,6,110052894,110053352 -1 - chr13 110053851 110053913 chr13,110053627,110053990,-,L1MEf,LINE,L1,-1449,1130,740,110052178,110054729 -3 - chr13 110057126 110057319 chr13,110056667,110057319,+,LTR58,LTR,ERV1,1,678,-1,110056667,110057320 -1 + chr13 110123243 110123400 chr13,110123243,110123400,+,LTR88b,LTR,Gypsy?,247,405,-432,110122997,110123832 +6 + chr13 110124968 110125007 chr13,110124968,110125007,+,(CTGTTG)n,Simple_repeat,Simple_repeat,1,39,0,110124968,110125007 +6 + chr13 110266077 110266113 chr13,110266077,110266247,+,MamRTE1,LINE,RTE-BovB,2871,3047,-765,110263207,110267012 -1 + chr13 110463036 110463287 chr13,110463036,110463464,-,MLT1C,LTR,ERVL-MaLR,0,467,3,110463036,110463466 +1 - chr13 110502575 110502624 chr13,110502320,110502624,-,AluSx1,SINE,Alu,-6,306,1,110502314,110502624 +5 - chr13 110502624 110502928 chr13,110502624,110502980,+,L1MB3,LINE,L1,5802,6176,-7,110496823,110502987 -2 + chr13 110613082 110613241 chr13,110613053,110613241,-,MER57C2,LTR,ERV1,0,434,249,110613053,110613489 +5 - chr13 110613348 110613520 chr13,110613348,110613520,-,MER41B,LTR,ERV1,0,634,456,110613348,110613975 +6 - chr13 110613520 110613909 chr13,110613520,110613909,+,LTR12F,LTR,ERV1,1,386,-133,110613520,110614042 -6 + chr13 110613909 110614209 chr13,110613909,110614209,-,AluY,SINE,Alu,-11,300,1,110613898,110614209 +6 - chr13 110614209 110614348 chr13,110614209,110614348,+,LTR12F,LTR,ERV1,387,519,0,110613823,110614348 -6 + chr13 110614348 110614797 chr13,110614348,110614797,-,MER41B,LTR,ERV1,-179,455,1,110614169,110614797 +6 - chr13 110614802 110615006 chr13,110614802,110615006,-,AluJr4,SINE,Alu,-112,200,1,110614690,110615006 +6 - chr13 110615090 110615214 chr13,110615090,110615214,-,L2,LINE,L2,-825,2594,2477,110614265,110617690 +6 - chr13 110616084 110616124 chr13,110616084,110616124,+,(TGCTC)n,Simple_repeat,Simple_repeat,1,41,0,110616084,110616124 -6 + chr13 110616209 110616245 chr13,110616209,110616245,+,(GGCG)n,Simple_repeat,Simple_repeat,1,36,0,110616209,110616245 -6 + chr13 110809676 110809947 chr13,110809526,110809947,+,L1M5,LINE,L1,4918,5322,-824,110804609,110810771 -5 + chr13 110809986 110810500 chr13,110809986,110810500,+,L1ME4b,LINE,L1,137,644,-248,110809850,110810748 -6 + chr13 110810502 110810537 chr13,110810502,110810537,+,A-rich,Low_complexity,Low_complexity,1,35,0,110810502,110810537 -6 + chr13 110810566 110810647 chr13,110810566,110810647,+,(AT)n,Simple_repeat,Simple_repeat,1,86,0,110810566,110810647 -6 + chr13 110810797 110810882 chr13,110810797,110810882,-,L2b,LINE,L2,0,3375,3282,110810797,110814163 +6 - chr13 110811336 110811441 chr13,110811336,110811441,-,Tigger14a,DNA,TcMar-Tigger,-159,165,48,110811177,110811488 +6 - chr13 110811922 110812152 chr13,110811922,110812152,-,MIR,SINE,MIR,-30,238,7,110811892,110812158 +6 - chr13 110864352 110864717 chr13,110864352,110864717,-,THE1D,LTR,ERVL-MaLR,0,375,1,110864352,110864717 +6 - chr13 110864717 110866185 chr13,110864717,110866185,-,THE1D-int,LTR,ERVL-MaLR,0,1580,1,110864717,110866185 +6 - chr13 110866185 110866560 chr13,110866185,110866560,-,THE1D,LTR,ERVL-MaLR,0,381,1,110866185,110866560 +6 - chr13 110866584 110866753 chr13,110866584,110866753,-,MIR,SINE,MIR,-63,199,33,110866521,110866785 +6 - chr13 110868300 110868381 chr13,110868300,110868381,+,MER81,DNA,hAT-Blackjack,2,83,-31,110868299,110868412 -6 + chr13 110868381 110868690 chr13,110868381,110868690,+,AluSx1,SINE,Alu,1,308,-4,110868381,110868694 -6 + chr13 110868690 110868728 chr13,110868690,110868728,+,MER81,DNA,hAT-Blackjack,84,113,-1,110868607,110868729 -6 + chr13 110869038 110869202 chr13,110869038,110869202,-,MER6B,DNA,TcMar-Tigger,-29,181,1,110869009,110869202 +6 - chr13 110869216 110869315 chr13,110869216,110869315,-,L1MC3,LINE,L1,-21,7764,7658,110869195,110876972 +6 - chr13 110895300 110895321 chr13,110895300,110895602,+,AluSx3,SINE,Alu,2,297,-14,110895299,110895616 -2 + chr13 110899056 110899092 chr13,110899056,110899092,-,AluJb,SINE,Alu,-179,133,102,110898877,110899193 +4 - chr13 110916927 110917044 chr13,110916927,110917044,-,MIR1_Amn,SINE,MIR,-82,148,29,110916845,110917072 -6 - chr13 110917361 110917827 chr13,110917361,110917917,+,MER41A,LTR,ERV1,1,554,0,110917361,110917917 +5 + chr13 111102698 111102764 chr13,111102606,111102764,-,MSTA,LTR,ERVL-MaLR,0,428,265,111102606,111103028 -2 - chr13 111102757 111102878 chr13,111102757,111102878,-,MSTA,LTR,ERVL-MaLR,-253,122,1,111102504,111102878 -6 - chr13 111102880 111103097 chr13,111102880,111105602,+,L1PA15,LINE,L1,2189,4901,-1772,111100692,111107374 +5 + chr13 111588201 111588246 chr13,111587853,111588246,-,MLT1C,LTR,ERVL-MaLR,-10,457,1,111587843,111588246 -1 - chr13 111641936 111642063 chr13,111641936,111642063,+,AluJo,SINE,Alu,172,297,-15,111641765,111642078 +6 + chr13 112083549 112084020 chr13,112083386,112084020,-,HAL1,LINE,L1,-21,2486,1853,112083365,112085872 -1 - chr13 112084131 112084198 chr13,112084131,112084198,-,HAL1ME,LINE,L1,-790,1675,1610,112083341,112085807 -6 - chr13 112084251 112084648 chr13,112084251,112084648,-,L1ME1,LINE,L1,-14,6165,5763,112084237,112090410 -6 - chr13 112084655 112084772 chr13,112084655,112084772,-,MER3,DNA,hAT-Charlie,-84,125,7,112084571,112084778 -6 - chr13 112084775 112085415 chr13,112084775,112085415,-,L1ME1,LINE,L1,-1103,5043,4392,112083672,112089806 -6 - chr13 112085405 112085471 chr13,112085405,112085516,-,L1MD,LINE,L1,-1902,4244,4130,112083503,112089645 -5 - chr13 112198376 112198753 chr13,112198376,112198753,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,112198376,112198753 -6 - chr13 112199752 112199923 chr13,112199752,112199923,+,MIR3,SINE,MIR,20,206,-2,112199733,112199925 +6 + chr13 112327310 112327545 chr13,112327310,112327576,+,AluSx1,SINE,Alu,4,306,-6,112327307,112327582 -2 + chr13 112603443 112603735 chr13,112603443,112603735,+,AluSc8,SINE,Alu,2,291,-20,112603442,112603755 -6 + chr13 112603828 112603886 chr13,112603828,112603886,+,G-rich,Low_complexity,Low_complexity,1,61,0,112603828,112603886 -6 + chr13 112604301 112604597 chr13,112604301,112604597,-,AluJb,SINE,Alu,-16,296,1,112604285,112604597 +6 - chr13 112604630 112604993 chr13,112604630,112604993,-,L1ME4a,LINE,L1,-2,6122,5713,112604628,112610705 +6 - chr13 112605024 112605309 chr13,112605024,112605309,+,AluSx1,SINE,Alu,1,285,-27,112605024,112605336 -6 + chr13 112605311 112605342 chr13,112605311,112605342,+,(ATA)n,Simple_repeat,Simple_repeat,1,31,0,112605311,112605342 -6 + chr13 112605857 112605934 chr13,112605857,112605934,-,MIRb,SINE,MIR,-132,136,51,112605725,112605984 +6 - chr13 112686906 112687368 chr13,112686906,112687368,+,MLT1H,LTR,ERVL-MaLR,81,485,-4,112686826,112687372 -6 + chr13 112687377 112687720 chr13,112687377,112687720,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,112687377,112687720 +6 - chr13 112687838 112688292 chr13,112687838,112688292,-,MLT1L,LTR,ERVL-MaLR,-80,530,1,112687758,112688292 +6 - chr13 112688450 112688775 chr13,112688450,112688775,-,LTR33,LTR,ERVL,-5,510,176,112688445,112688950 +6 - chr13 112745764 112746337 chr13,112745764,112746337,-,L1MB2,LINE,L1,-2,6169,5499,112745762,112751835 +6 - chr13 112746458 112746545 chr13,112746458,112746545,-,L1MB2,LINE,L1,-663,5517,5432,112745795,112751976 +6 - chr13 112746545 112746857 chr13,112746545,112746857,-,AluJr,SINE,Alu,-12,300,1,112746533,112746857 +6 - chr13 112746857 112746996 chr13,112746857,112746996,-,L1MB2,LINE,L1,-749,5431,5272,112746108,112752267 +6 - chr13 112754494 112754535 chr13,112754412,112754535,-,MIR,SINE,MIR,-80,182,60,112754332,112754594 +4 - chr13 112811607 112811905 chr13,112811607,112811905,-,AluSg,SINE,Alu,-14,296,1,112811593,112811905 -6 - chr13 112811911 112812066 chr13,112811911,112812066,-,L1MA4,LINE,L1,-2,6298,6140,112811909,112818205 -6 - chr13 112965136 112965178 chr13,112965136,112965178,+,(CCTCC)n,Simple_repeat,Simple_repeat,1,43,0,112965136,112965178 -6 + chr13 112965999 112966131 chr13,112965999,112966147,+,MIRb,SINE,MIR,88,251,-17,112965912,112966164 -1 + chr13 112967507 112967643 chr13,112967507,112967643,+,L2c,LINE,L2,3207,3335,-52,112964301,112967695 -6 + chr13 113008778 113008846 chr13,113008756,113008846,-,LTR54,LTR,ERV1,-379,131,27,113008377,113008872 -1 - chr13 113008966 113009023 chr13,113008966,113009023,+,G-rich,Low_complexity,Low_complexity,1,55,0,113008966,113009023 +6 + chr13 113128155 113128425 chr13,113128125,113128578,-,MER4D,LTR,ERV1,0,903,436,113128125,113129013 +5 - chr13 113128735 113128880 chr13,113128578,113128910,+,AluSz,SINE,Alu,1,312,0,113128578,113128910 -1 + chr13 113339450 113339830 chr13,113339209,113339830,-,L1ME3Cz,LINE,L1,-855,5291,4615,113338354,113344444 +5 - chr13 113339926 113339958 chr13,113339926,113340011,-,L1MD,LINE,L1,-2471,3675,3589,113337455,113343599 +1 - chr13 113361559 113361579 chr13,113361131,113361579,+,Tigger13a,DNA,TcMar-Tigger,272,713,-58,113360860,113361637 +2 + chr13 113400125 113400443 chr13,113400125,113400443,-,AluY,SINE,Alu,0,311,1,113400125,113400443 +6 - chr13 113400443 113400472 chr13,113400443,113400472,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,113400443,113400472 -6 + chr13 113402936 113402991 chr13,113402936,113402991,+,G-rich,Low_complexity,Low_complexity,1,56,0,113402936,113402991 -6 + chr13 113403901 113403936 chr13,113403901,113403936,+,(TCTGCG)n,Simple_repeat,Simple_repeat,1,35,0,113403901,113403936 -6 + chr13 113468901 113468942 chr13,113468663,113468942,+,L1MC5a,LINE,L1,1,292,-2699,113468663,113471641 +1 + chr13 113475390 113475432 chr13,113475304,113475552,+,Tigger3c,DNA,TcMar-Tigger,346,602,0,113474959,113475552 +1 + chr13 113476017 113476135 chr13,113476017,113476292,-,L1ME3B,LINE,L1,-375,5867,5579,113475642,113481870 -5 - chr13 113514297 113514454 chr13,113514244,113514454,+,L1ME4c,LINE,L1,5204,5379,-767,113509041,113515221 +2 + chr13 113527260 113528259 chr13,113527123,113528259,-,L1MDa,LINE,L1,-4410,2223,1027,113522713,113529285 -1 - chr13 113529282 113529369 chr13,113529282,113529369,+,FLAM_C,SINE,Alu,1,69,-233,113529282,113529602 +6 + chr13 113529369 113529676 chr13,113529369,113529676,+,AluSc8,SINE,Alu,2,308,-3,113529368,113529679 +6 + chr13 113529676 113529720 chr13,113529676,113529720,+,AluSx,SINE,Alu,68,100,-201,113529609,113529921 +6 + chr13 113529725 113529804 chr13,113529725,113529804,+,L1M5,LINE,L1,5614,5693,-486,113524112,113530290 +6 + chr13 113529796 113529915 chr13,113529796,113529915,+,L1MB3,LINE,L1,6063,6181,-2,113523734,113529917 +6 + chr13 113529910 113530391 chr13,113529910,113530391,+,L1MB8,LINE,L1,5679,6177,-1,113524232,113530392 +6 + chr13 113530441 113530460 chr13,113530441,113530460,+,(AT)n,Simple_repeat,Simple_repeat,1,19,0,113530441,113530460 +6 + chr13 113748511 113748705 chr13,113748483,113748705,+,Tigger3,DNA,TcMar-Tigger,2756,2968,-61,113745728,113748766 -5 + chr13 113750002 113750087 chr13,113750002,113750087,+,Charlie1a,DNA,hAT-Charlie,105,190,-1265,113749898,113751352 -6 + chr13 113750210 113750447 chr13,113750210,113750447,+,Charlie1a,DNA,hAT-Charlie,448,699,-756,113749763,113751203 -6 + chr13 113750444 113750540 chr13,113750444,113750540,+,Charlie1a,DNA,hAT-Charlie,809,905,-550,113749636,113751090 -6 + chr13 113750588 113750870 chr13,113750588,113750870,+,(TG)n,Simple_repeat,Simple_repeat,1,284,0,113750588,113750870 -6 + chr13 113750870 113750913 chr13,113750870,113750913,+,(TGCATGTG)n,Simple_repeat,Simple_repeat,1,45,0,113750870,113750913 -6 + chr13 113750913 113751089 chr13,113750913,113751408,+,(TG)n,Simple_repeat,Simple_repeat,1,501,0,113750913,113751408 -1 + chr13 113815630 113815691 chr13,113815414,113815766,+,THE1A,LTR,ERVL-MaLR,1,355,0,113815414,113815766 +1 + chr13 113843157 113843204 chr13,113843157,113843204,+,(CCCCCT)n,Simple_repeat,Simple_repeat,1,47,0,113843157,113843204 +6 + chr13 113845131 113845165 chr13,113845131,113845165,+,(GCAGG)n,Simple_repeat,Simple_repeat,1,34,0,113845131,113845165 +6 + chr13 113845654 113845744 chr13,113845654,113845825,+,L1ME4b,LINE,L1,63,240,-652,113845592,113846477 +5 + chr13 113865010 113865287 chr13,113864979,113865287,-,AluY,SINE,Alu,-3,308,1,113864976,113865287 -2 - chr13 113865581 113865666 chr13,113865581,113865666,-,L2a,LINE,L2,-2,3424,3288,113865579,113868953 -6 - chr13 113865635 113865713 chr13,113865635,113865713,-,MIRb,SINE,MIR,-15,253,173,113865620,113865885 -6 - chr13 113866404 113866833 chr13,113866404,113867054,-,L1ME1,LINE,L1,-71,6436,5643,113866333,113872696 -5 - chr13 113880532 113880592 chr13,113880255,113880592,+,Tigger7,DNA,TcMar-Tigger,2146,2488,-3,113878110,113880595 -5 + chr13 113880595 113880697 chr13,113880595,113880697,-,MLT1C,LTR,ERVL-MaLR,-359,108,4,113880236,113880700 +6 - chr13 113883231 113883295 chr13,113883028,113883295,-,L1MC5,LINE,L1,-756,8548,8204,113882272,113891498 +4 - chr13 113884954 113885097 chr13,113884925,113885097,-,MLT1D,LTR,ERVL-MaLR,-295,210,30,113884630,113885126 -2 - chr13 113888306 113888431 chr13,113888103,113888826,+,MER21C,LTR,ERVL,110,862,-76,113887994,113888902 +1 + chr13 113895103 113895118 chr13,113894904,113895118,-,L1MD1,LINE,L1,0,6242,6016,113894904,113901133 -1 - chr13 113895103 113895221 chr13,113895088,113895221,-,L1MC2,LINE,L1,-5927,384,252,113889161,113895472 -1 - chr13 113898670 113898687 chr13,113898670,113898885,-,L1ME2z,LINE,L1,-281,6163,5940,113898389,113904824 -4 - chr13 113898765 113898872 chr13,113898670,113898885,-,L1ME2z,LINE,L1,-281,6163,5940,113898389,113904824 -3 - chr13 113901971 113902014 chr13,113901971,113902033,+,L2b,LINE,L2,3291,3358,-17,113898681,113902050 +4 + chr13 113921201 113921235 chr13,113921201,113921235,+,(TTTA)n,Simple_repeat,Simple_repeat,1,34,0,113921201,113921235 +6 + chr13 113921861 113922100 chr13,113921861,113922100,-,HAL1,LINE,L1,-698,1809,1564,113921163,113923663 -6 - chr13 113922586 113922732 chr13,113922586,113922732,-,MLT1B,LTR,ERVL-MaLR,-21,369,237,113922565,113922968 -6 - chr13 113922732 113923025 chr13,113922732,113923025,+,MER21B,LTR,ERVL,1,285,-583,113922732,113923608 +6 + chr13 113923025 113923334 chr13,113923025,113923334,-,MER4D,LTR,ERV1,0,903,577,113923025,113923910 -6 - chr13 113923391 113923512 chr13,113923391,113923643,-,MER49,LTR,ERV1,-641,282,6,113922750,113923648 -5 - chr13 113926514 113926763 chr13,113926330,113926763,+,L1MB5,LINE,L1,5735,6164,-10,113920596,113926773 -5 + chr13 113928588 113928661 chr13,113928588,113928661,+,MIR,SINE,MIR,93,166,-96,113928496,113928757 -6 + chr13 114329559 114329685 chr13,114329467,114329685,-,L1MA9,LINE,L1,-331,5981,5773,114329136,114335457 +5 - chr13 114330666 114330778 chr13,114330511,114330802,+,AluSx4,SINE,Alu,2,299,-11,114330510,114330813 -3 + chr13 114333835 114333919 chr13,114333474,114333919,+,HAL1,LINE,L1,1295,1788,-719,114332180,114334638 -4 + chr14 18555677 18555717 chr14,18555302,18555717,-,L1MEc,LINE,L1,-5901,499,49,18549401,18555765 +5 - chr14 18555718 18556122 chr14,18555718,18556131,-,L1MEd,LINE,L1,-5549,1537,1139,18550169,18557269 +2 - chr14 18630318 18630378 chr14,18630065,18630378,-,AluYm1,SINE,Alu,-2,309,1,18630063,18630378 +5 - chr14 18630452 18630669 chr14,18630452,18630669,-,L1MD,LINE,L1,-1907,4239,4023,18628545,18634691 +6 - chr14 18633465 18633634 chr14,18633427,18633815,+,L2c,LINE,L2,2932,3386,-1,18630496,18633816 -1 + chr14 18920109 18920407 chr14,18918437,18921045,+,REP522,Satellite,telo,1,2644,-1270,18918437,18922315 +1 + chr14 18921623 18921776 chr14,18921613,18921975,+,REP522,Satellite,telo,1019,1419,-398,18920595,18922373 +3 + chr14 18929581 18929701 chr14,18928916,18929701,-,L1PB1,LINE,L1,-712,5439,4636,18928204,18934336 -1 - chr14 18931742 18931848 chr14,18931394,18932483,-,L1MA6,LINE,L1,-56,6244,5082,18931338,18937564 -3 - chr14 18934041 18934078 chr14,18933644,18934609,-,L1MA6,LINE,L1,-41,6259,5276,18933603,18939884 -5 - chr14 18944199 18944349 chr14,18943574,18944349,-,L1PA16,LINE,L1,-14,6152,5390,18943560,18949738 -1 - chr14 18977875 18978148 chr14,18977875,18978148,-,MamGypLTR3a,LTR,Gypsy,-26,955,599,18977849,18978746 +6 - chr14 18978846 18978870 chr14,18978846,18978952,+,U6,snRNA,snRNA,1,106,-1,18978846,18978953 -2 + chr14 18980348 18980702 chr14,18980181,18980702,-,MER1A,DNA,hAT-Charlie,-6,523,1,18980175,18980702 +4 - chr14 19031761 19031826 chr14,19031580,19032093,-,L1ME1,LINE,L1,-29,6150,5629,19031551,19037721 -3 - chr14 19127736 19128107 chr14,19123148,19128107,-,L1M1,LINE,L1,-2465,5100,13,19120683,19128119 +5 - chr14 19128156 19128249 chr14,19128156,19128276,+,MIR,SINE,MIR,35,159,-103,19128122,19128379 -2 + chr14 19244986 19245015 chr14,19244986,19245015,+,(AATTG)n,Simple_repeat,Simple_repeat,1,30,0,19244986,19245015 +6 + chr14 19246684 19246780 chr14,19246684,19246780,+,MIRb,SINE,MIR,60,156,-112,19246625,19246892 +6 + chr14 19246841 19247038 chr14,19246841,19247038,-,Charlie8,DNA,hAT-Charlie,-2158,270,43,19244683,19247080 -6 - chr14 19348220 19348387 chr14,19348220,19348387,-,MIR,SINE,MIR,-66,196,20,19348154,19348406 +6 - chr14 19348482 19348537 chr14,19348482,19348537,+,(CATT)n,Simple_repeat,Simple_repeat,1,61,0,19348482,19348537 -6 + chr14 19357022 19357132 chr14,19357022,19358029,-,ALR/Alpha,Satellite,centr,-18,1007,1,19357004,19358029 +2 - chr14 19368193 19368258 chr14,19367863,19368438,+,L1ME1,LINE,L1,5563,6150,-29,19362301,19368467 -3 + chr14 19381177 19381252 chr14,19380779,19381252,-,L1P4,LINE,L1,-670,5496,5020,19380109,19386271 +4 - chr14 19382247 19382556 chr14,19382247,19382556,+,AluJr,SINE,Alu,6,296,-16,19382242,19382572 -6 + chr14 19382726 19383165 chr14,19382726,19383165,+,L1PA7,LINE,L1,1976,2401,-3745,19380751,19386910 -6 + chr14 19420975 19421000 chr14,19420853,19421000,+,Zaphod2,DNA,hAT-Tip100,155,307,-3217,19420699,19424217 +1 + chr14 19421065 19421420 chr14,19421065,19421586,+,MER1A,DNA,hAT-Charlie,1,523,-6,19421065,19421592 +4 + chr14 19422898 19422921 chr14,19422815,19422921,-,U6,snRNA,snRNA,-1,106,1,19422814,19422921 -2 - chr14 19423619 19423892 chr14,19423619,19423892,+,MamGypLTR3a,LTR,Gypsy,692,955,-26,19422928,19423918 +6 + chr14 19424766 19424970 chr14,19424766,19424970,-,MIRb,SINE,MIR,-34,234,13,19424732,19424982 -6 - chr14 19637225 19637266 chr14,19637174,19637307,-,MIRb,SINE,MIR,-32,236,97,19637142,19637403 -1 - chr14 19640373 19640507 chr14,19640373,19640507,+,FLAM_C,SINE,Alu,1,133,-10,19640373,19640517 +6 + chr14 19640513 19640545 chr14,19640513,19640545,+,A-rich,Low_complexity,Low_complexity,1,32,0,19640513,19640545 +6 + chr14 19640545 19640731 chr14,19640545,19640731,-,MER92-int,LTR,ERV1,-3958,1260,1066,19636587,19641796 -6 - chr14 19640731 19641036 chr14,19640731,19641036,-,AluSx,SINE,Alu,-18,294,1,19640713,19641036 -6 - chr14 19641036 19641215 chr14,19641036,19641215,-,MER92-int,LTR,ERV1,-4153,1065,889,19636883,19642103 -6 - chr14 19641269 19641306 chr14,19641269,19641487,-,L1ME4b,LINE,L1,-425,467,227,19640844,19641713 -5 - chr14 19656157 19656254 chr14,19655445,19656289,+,L1ME4b,LINE,L1,4382,5325,-821,19651064,19657110 +3 + chr14 19660531 19660578 chr14,19660512,19660727,-,L1MEc,LINE,L1,-6095,305,92,19654417,19660818 -3 - chr14 19681420 19681589 chr14,19681242,19681626,-,L2c,LINE,L2,-5,3382,2932,19681237,19684557 -1 - chr14 19684387 19684546 chr14,19684387,19684546,+,L1MD,LINE,L1,4017,4178,-1968,19680371,19686514 +6 + chr14 19684678 19684739 chr14,19684678,19684991,+,AluYm1,SINE,Alu,1,309,-2,19684678,19684993 +5 + chr14 20260963 20261088 chr14,20260963,20261088,+,AluJo,SINE,Alu,1,125,-187,20260963,20261275 -6 + chr14 20261088 20261389 chr14,20261088,20261389,-,AluY,SINE,Alu,-13,298,1,20261075,20261389 +6 - chr14 20261389 20261550 chr14,20261389,20261550,+,AluJo,SINE,Alu,126,279,-33,20261264,20261583 -6 + chr14 20261666 20261789 chr14,20261666,20261789,+,L1MC1,LINE,L1,5860,5993,-249,20255807,20262038 -6 + chr14 20261832 20262200 chr14,20261832,20262200,+,L1MC1,LINE,L1,5961,6328,-5,20255872,20262205 -6 + chr14 20262581 20262701 chr14,20262581,20262701,-,MIR3,SINE,MIR,-87,121,2,20262494,20262702 +6 - chr14 20262891 20262919 chr14,20262891,20262919,+,G-rich,Low_complexity,Low_complexity,1,28,0,20262891,20262919 -6 + chr14 20263342 20263507 chr14,20263342,20263507,+,L1ME4b,LINE,L1,707,892,0,20262636,20263507 -6 + chr14 20264059 20264308 chr14,20264059,20264436,+,L1M5,LINE,L1,3331,3713,-2433,20260729,20266869 -1 + chr14 20306437 20306581 chr14,20306419,20306581,+,L1ME4b,LINE,L1,707,881,-11,20305713,20306592 +2 + chr14 20306605 20306777 chr14,20306605,20306777,+,L1ME4b,LINE,L1,703,871,-21,20305903,20306798 +6 + chr14 20343048 20343065 chr14,20343032,20343065,+,(T)n,Simple_repeat,Simple_repeat,1,33,0,20343032,20343065 -5 + chr14 20343643 20343683 chr14,20343643,20343683,+,(GGC)n,Simple_repeat,Simple_repeat,1,43,0,20343643,20343683 -6 + chr14 20344233 20344313 chr14,20344192,20344313,-,MIR,SINE,MIR,-131,131,4,20344061,20344316 +5 - chr14 20346565 20346633 chr14,20346321,20346633,-,AluSx1,SINE,Alu,-6,306,1,20346315,20346633 +4 - chr14 20451305 20451324 chr14,20451288,20451324,+,(TTGT)n,Simple_repeat,Simple_repeat,1,39,0,20451288,20451324 +1 + chr14 20451324 20451448 chr14,20451324,20451605,-,AluSq2,SINE,Alu,-31,282,2,20451293,20451606 -4 - chr14 20451585 20451605 chr14,20451324,20451605,-,AluSq2,SINE,Alu,-31,282,2,20451293,20451606 -2 - chr14 20588160 20588265 chr14,20588160,20588265,-,MIR3,SINE,MIR,-5,203,98,20588155,20588362 -6 - chr14 20596671 20596736 chr14,20596543,20596736,-,L1MA7,LINE,L1,0,6291,6105,20596543,20602840 -2 - chr14 20602663 20602782 chr14,20600301,20604516,+,HERVL18-int,LTR,ERVL,56,4289,-1758,20600246,20606274 +5 + chr14 20605842 20606987 chr14,20605767,20606987,+,HERVL18-int,LTR,ERVL,4823,6047,0,20600945,20606987 +5 + chr14 20606988 20607137 chr14,20606988,20607318,+,LTR18C,LTR,ERVL,1,345,0,20606988,20607318 +5 + chr14 20706808 20707120 chr14,20706808,20707335,-,LTR26B,LTR,ERV1,0,531,1,20706808,20707335 +1 - chr14 20872372 20872432 chr14,20872350,20872432,+,AluJo,SINE,Alu,137,218,-94,20872214,20872526 -4 + chr14 20872502 20872561 chr14,20872502,20872586,+,FAM,SINE,Alu,95,179,-6,20872408,20872592 -2 + chr14 20873294 20873370 chr14,20873294,20873443,-,MLT1M,LTR,ERVL-MaLR,-471,201,42,20872823,20873484 +1 - chr14 20928237 20928534 chr14,20928214,20928534,-,MER21C,LTR,ERVL,-488,450,123,20927726,20928656 +4 - chr14 20928544 20928580 chr14,20928544,20928696,-,AluJb,SINE,Alu,-22,290,138,20928522,20928833 +1 - chr14 20997066 20997210 chr14,20997066,20997233,+,AluJo,SINE,Alu,137,302,-10,20996930,20997243 -2 + chr14 21024322 21024344 chr14,21024322,21024505,+,MIR3,SINE,MIR,2,185,-23,21024321,21024528 +4 + chr14 21028446 21028513 chr14,21028220,21028513,-,AluJr,SINE,Alu,0,312,1,21028220,21028513 -2 - chr14 21029260 21029271 chr14,21029260,21029318,+,MLT1A0,LTR,ERVL-MaLR,1,47,-318,21029260,21029636 +5 + chr14 21032828 21032937 chr14,21032828,21032937,-,L1MD2,LINE,L1,-13,6346,6238,21032815,21039174 -6 - chr14 21116690 21116703 chr14,21116690,21116720,+,(TATTT)n,Simple_repeat,Simple_repeat,1,30,0,21116690,21116720 +5 + chr14 21200079 21200108 chr14,21198916,21200108,+,L1MD2,LINE,L1,5123,6358,-1,21193794,21200109 -5 + chr14 21200186 21200717 chr14,21200186,21200717,+,L1ME3A,LINE,L1,5602,6173,0,21194585,21200717 -5 + chr14 21200713 21201046 chr14,21200713,21201046,+,L1ME3,LINE,L1,5808,6145,-419,21194906,21201465 -6 + chr14 21201069 21201344 chr14,21201069,21201344,+,LTR16E1,LTR,ERVL,200,531,-7,21200870,21201351 -6 + chr14 21201347 21201589 chr14,21201347,21201589,+,L1ME3,LINE,L1,6302,6552,-1,21195046,21201590 -6 + chr14 21201691 21201975 chr14,21201691,21201975,+,AluSg7,SINE,Alu,2,288,-21,21201690,21201996 -6 + chr14 21202278 21202952 chr14,21202278,21202952,-,L2b,LINE,L2,0,3375,2628,21202278,21205579 +6 - chr14 21203851 21204211 chr14,21203851,21204211,-,THE1C,LTR,ERVL-MaLR,-4,371,1,21203847,21204211 +6 - chr14 21204866 21205116 chr14,21204866,21205116,+,AluSx1,SINE,Alu,1,286,-26,21204866,21205142 -6 + chr14 21206611 21206681 chr14,21206513,21206681,-,MER5B,DNA,hAT-Charlie,-1,177,5,21206512,21206685 +4 - chr14 21522406 21522421 chr14,21522386,21522421,+,GA-rich,Low_complexity,Low_complexity,1,38,0,21522386,21522421 +2 + chr14 21714829 21714989 chr14,21714829,21715119,+,AluJb,SINE,Alu,5,294,-18,21714825,21715137 -2 + chr14 21715888 21715938 chr14,21715636,21715938,-,AluSz,SINE,Alu,-9,303,1,21715627,21715938 +4 - chr14 22381782 22381807 chr14,22381782,22381807,+,(AC)n,Simple_repeat,Simple_repeat,1,25,0,22381782,22381807 -6 + chr14 22381896 22381958 chr14,22381896,22381958,+,UCON132b,DNA,hAT-Tip100,63,125,-23,22381834,22381981 -6 + chr14 22382014 22382208 chr14,22382014,22382208,+,X7C_LINE,LINE,CR1,46,233,-3,22381969,22382211 -5 + chr14 22382312 22382405 chr14,22382312,22382420,+,MIRc,SINE,MIR,43,151,-117,22382270,22382537 -5 + chr14 22465244 22465286 chr14,22465156,22465316,+,MIR3,SINE,MIR,3,163,-45,22465154,22465361 -3 + chr14 22557655 22557703 chr14,22557655,22557880,+,L1ME3,LINE,L1,5910,6170,-274,22551746,22558154 +4 + chr14 22595862 22595980 chr14,22595862,22595980,-,MIR,SINE,MIR,-127,135,15,22595735,22595994 +6 - chr14 22595997 22596096 chr14,22595997,22596096,+,MER5A,DNA,hAT-Charlie,34,123,-66,22595964,22596162 -6 + chr14 22596096 22596203 chr14,22596096,22596387,-,AluSg,SINE,Alu,-19,291,1,22596077,22596387 +2 - chr14 22596672 22596757 chr14,22596487,22596757,+,AluJo,SINE,Alu,13,293,-19,22596475,22596776 -4 + chr14 22597014 22597332 chr14,22597014,22597332,-,AluSx1,SINE,Alu,0,312,5,22597014,22597336 +6 - chr14 22597681 22597829 chr14,22597681,22597829,-,MER53,DNA,hAT,0,193,4,22597681,22597832 +6 - chr14 22598340 22598372 chr14,22598340,22598372,+,(CT)n,Simple_repeat,Simple_repeat,1,32,0,22598340,22598372 -6 + chr14 22706215 22706238 chr14,22706082,22706238,+,L2,LINE,L2,2542,2690,-729,22703541,22706967 -5 + chr14 22706243 22706415 chr14,22706243,22706624,+,LTR78,LTR,ERV1,849,1227,-77,22705395,22706701 -2 + chr14 22762025 22762143 chr14,22761822,22762258,+,L1M4c,LINE,L1,1576,1973,-4776,22760247,22767034 -3 + chr14 22764123 22764222 chr14,22764094,22764222,-,FLAM_C,SINE,Alu,-14,129,1,22764080,22764222 +4 - chr14 22764222 22764242 chr14,22764222,22764340,+,Tigger1,DNA,TcMar-Tigger,2310,2418,0,22761913,22764340 -2 + chr14 22764385 22764657 chr14,22764366,22764854,-,MLT1G1,LTR,ERVL-MaLR,-39,540,5,22764327,22764858 +5 - chr14 22893316 22893670 chr14,22893316,22893670,-,L2c,LINE,L2,-1,3386,3024,22893315,22896693 +6 - chr14 22893952 22894117 chr14,22893952,22894117,+,MIRb,SINE,MIR,78,248,-20,22893875,22894137 -6 + chr14 22897758 22897972 chr14,22897758,22897972,+,MIR,SINE,MIR,16,252,-10,22897743,22897982 -6 + chr14 22919997 22920137 chr14,22919997,22920137,+,MIR3,SINE,MIR,37,203,-5,22919961,22920142 +6 + chr14 22929700 22929752 chr14,22929700,22929773,+,tRNA-Arg-CGY_,tRNA,tRNA,1,73,-3,22929700,22929776 +4 + chr14 22998338 22998378 chr14,22998338,22998378,+,A-rich,Low_complexity,Low_complexity,1,41,0,22998338,22998378 +6 + chr14 23512855 23512873 chr14,23512855,23512884,+,(TGGTG)n,Simple_repeat,Simple_repeat,1,29,0,23512855,23512884 +4 + chr14 23513392 23513454 chr14,23513392,23513454,+,(GT)n,Simple_repeat,Simple_repeat,1,62,0,23513392,23513454 +6 + chr14 23514063 23514103 chr14,23514063,23514103,+,(CTGGCA)n,Simple_repeat,Simple_repeat,1,40,0,23514063,23514103 +6 + chr14 23530824 23530882 chr14,23530824,23530882,+,(TGCCCA)n,Simple_repeat,Simple_repeat,1,61,0,23530824,23530882 +6 + chr14 23531781 23532075 chr14,23531781,23532075,-,AluSz,SINE,Alu,-14,298,1,23531767,23532075 -6 - chr14 23542918 23543021 chr14,23542742,23543021,-,AluSc8,SINE,Alu,-14,297,2,23542728,23543022 -2 - chr14 23543150 23543387 chr14,23543150,23543387,-,MIR,SINE,MIR,-3,259,20,23543147,23543406 -6 - chr14 23543850 23543975 chr14,23543850,23543975,+,MIRb,SINE,MIR,25,152,-116,23543826,23544091 +6 + chr14 23543982 23544276 chr14,23543982,23544298,+,AluSz,SINE,Alu,14,312,0,23543969,23544298 +5 + chr14 23560472 23560582 chr14,23560472,23560582,-,L2c,LINE,L2,-1,3425,3297,23560471,23563878 -6 - chr14 23560586 23560667 chr14,23560586,23560667,+,AluSx,SINE,Alu,1,75,-227,23560586,23560894 +6 + chr14 23560667 23560778 chr14,23560667,23560807,+,AluSx,SINE,Alu,172,311,-1,23560496,23560808 +5 + chr14 23564727 23564840 chr14,23564712,23564879,-,AluJb,SINE,Alu,-23,289,93,23564689,23564971 -3 - chr14 23619249 23619301 chr14,23619249,23619301,+,(AACC)n,Simple_repeat,Simple_repeat,1,52,0,23619249,23619301 +6 + chr14 23619621 23619743 chr14,23619621,23619743,-,L1ME2,LINE,L1,-99,6065,5919,23619522,23625661 -6 - chr14 23619792 23620012 chr14,23619792,23620094,-,L1M5,LINE,L1,-1107,5039,4745,23618685,23624838 -5 - chr14 23729650 23729737 chr14,23729650,23729737,+,MIR3,SINE,MIR,104,197,-11,23729547,23729748 -1 + chr14 23934177 23934400 chr14,23934101,23934400,+,AluSz,SINE,Alu,12,309,-3,23934090,23934403 -4 + chr14 23938731 23938840 chr14,23938424,23938840,+,L1M5,LINE,L1,4785,5238,-908,23933640,23939748 -5 + chr14 23938865 23939284 chr14,23938865,23939284,+,L1ME3G,LINE,L1,16,472,-452,23938850,23939736 -6 + chr14 23939291 23939446 chr14,23939291,23939446,+,L1MC4a,LINE,L1,7719,7875,-7,23931573,23939453 -6 + chr14 23939575 23940044 chr14,23939575,23940044,-,LTR7C,LTR,ERV1,0,471,1,23939575,23940044 +5 - chr14 23940351 23940646 chr14,23940351,23940646,-,AluSp,SINE,Alu,-17,296,1,23940334,23940646 +5 - chr14 23940722 23940744 chr14,23940722,23940744,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,23940722,23940744 -6 + chr14 23941084 23941158 chr14,23941084,23941490,-,ERV3-16A3_LTR,LTR,ERVL,0,422,1,23941084,23941490 +2 - chr14 23988754 23988806 chr14,23988754,23988806,+,(GGCGGCG)n,Simple_repeat,Simple_repeat,1,52,0,23988754,23988806 -6 + chr14 24139750 24139791 chr14,24139750,24139791,+,(TGCTTGA)n,Simple_repeat,Simple_repeat,1,41,0,24139750,24139791 +6 + chr14 24139793 24139938 chr14,24139793,24139938,+,L1ME4b,LINE,L1,260,396,-496,24139534,24140434 +6 + chr14 24139951 24140182 chr14,24139951,24140182,+,L1MC5a,LINE,L1,455,718,-2059,24139497,24142241 +6 + chr14 24140286 24140444 chr14,24140286,24140609,+,AluSx,SINE,Alu,1,298,-14,24140286,24140623 +5 + chr14 24198433 24198607 chr14,24198306,24198607,-,AluSx4,SINE,Alu,0,310,1,24198306,24198607 -1 - chr14 24198607 24198848 chr14,24198607,24198848,+,L2c,LINE,L2,3107,3380,-7,24195501,24198855 +6 + chr14 24201612 24201959 chr14,24201580,24201959,-,MSTA,LTR,ERVL-MaLR,-17,411,3,24201563,24201961 +5 - chr14 24201966 24202811 chr14,24201966,24203033,+,MER11C,LTR,ERVK,1,1071,0,24201966,24203033 -1 + chr14 24212739 24212866 chr14,24212554,24212866,-,AluSx,SINE,Alu,-13,299,1,24212541,24212866 +5 - chr14 24212866 24212998 chr14,24212866,24212998,-,AluSx4,SINE,Alu,-177,133,2,24212689,24212999 +6 - chr14 24508580 24508688 chr14,24508580,24508738,-,MER112,DNA,hAT-Charlie,-13,248,95,24508567,24508832 -5 - chr14 24595723 24596002 chr14,24593738,24596300,-,L1PB1,LINE,L1,-3969,2894,255,24589769,24596554 -1 - chr14 24622968 24623126 chr14,24620509,24623760,-,L1PA8,LINE,L1,-2789,3672,410,24617720,24624169 -3 - chr14 24654647 24654707 chr14,24654371,24654897,-,L1MA4,LINE,L1,-4,6296,5734,24654367,24660630 -3 - chr14 24657525 24657626 chr14,24657504,24657626,+,LTR16D2,LTR,ERVL,49,170,-402,24657456,24658028 +2 + chr14 25820414 25820485 chr14,25820414,25820485,-,MER102c,DNA,hAT-Charlie,-3,328,258,25820411,25820742 -6 - chr14 25820542 25820715 chr14,25820542,25820715,-,MER102c,DNA,hAT-Charlie,-78,253,68,25820464,25820782 -6 - chr14 25821520 25821621 chr14,25821520,25821621,-,MLT1K,LTR,ERVL-MaLR,-22,573,475,25821498,25822095 -6 - chr14 25821704 25821864 chr14,25821704,25821864,-,MIR,SINE,MIR,-78,184,9,25821626,25821872 -6 - chr14 25821843 25821959 chr14,25821843,25821959,-,MER5B,DNA,hAT-Charlie,-62,116,4,25821781,25821962 -6 - chr14 25835938 25835974 chr14,25835938,25835977,+,(CTTCCAA)n,Simple_repeat,Simple_repeat,1,40,0,25835938,25835977 -2 + chr14 25838493 25838530 chr14,25838493,25838594,-,MLT1K,LTR,ERVL-MaLR,-472,123,16,25838021,25838609 +2 - chr14 26126157 26126215 chr14,26126078,26126439,-,MSTD,LTR,ERVL-MaLR,0,396,2,26126078,26126440 +3 - chr14 26594177 26594219 chr14,26594177,26594219,+,(TGTTTAA)n,Simple_repeat,Simple_repeat,1,44,0,26594177,26594219 -6 + chr14 26664129 26664201 chr14,26664129,26664201,+,(TATAAGA)n,Simple_repeat,Simple_repeat,1,76,0,26664129,26664201 +6 + chr14 26731064 26731156 chr14,26730659,26731468,+,LTR104_Mam,LTR,Gypsy,503,1302,-207,26730157,26731675 +3 + chr14 26735354 26735372 chr14,26735260,26736069,+,L1PA13,LINE,L1,5325,6159,-4,26729936,26736073 +1 + chr14 26797914 26798030 chr14,26797892,26798049,-,AluJr,SINE,Alu,-10,302,137,26797882,26798185 -3 - chr14 26812233 26812281 chr14,26812090,26812281,-,MIR,SINE,MIR,-37,225,28,26812053,26812308 -2 - chr14 26820713 26820790 chr14,26820713,26820848,+,MamRep434,DNA,TcMar-Tigger,1,137,-289,26820713,26821137 -2 + chr14 26843452 26843647 chr14,26843346,26843647,-,AluY,SINE,Alu,-11,300,1,26843335,26843647 -1 - chr14 27132248 27132271 chr14,27131729,27132992,-,L1ME1,LINE,L1,-30,6149,4897,27131699,27137888 -3 - chr14 27133970 27134038 chr14,27133927,27134078,-,HAL1ME,LINE,L1,-1611,854,715,27132316,27134792 -3 - chr14 27160277 27160420 chr14,27160093,27160610,+,MLT1E1A,LTR,ERVL-MaLR,1,672,-8,27160093,27160618 +5 + chr14 27612588 27612677 chr14,27612284,27612881,+,LTR66,LTR,ERVL,1,610,0,27612284,27612881 +1 + chr14 27613421 27613496 chr14,27612881,27613894,+,MER4B-int,LTR,ERV1,4732,5731,-1027,27608150,27614921 +3 + chr14 27619823 27619873 chr14,27619689,27622001,+,L1MDa,LINE,L1,2064,4443,-2094,27617626,27624095 +3 + chr14 27637465 27637556 chr14,27637465,27637556,-,L1ME4c,LINE,L1,-446,384,293,27637019,27637848 -6 - chr14 27637556 27637773 chr14,27637556,27637773,-,Tigger1,DNA,TcMar-Tigger,-2131,287,72,27635425,27637844 -6 - chr14 27638232 27638474 chr14,27638232,27638474,-,HAL1b,LINE,L1,-1837,584,344,27636395,27638817 -6 - chr14 27638942 27638990 chr14,27638942,27638990,+,(ATGTCAT)n,Simple_repeat,Simple_repeat,1,53,0,27638942,27638990 +6 + chr14 27639222 27639254 chr14,27639222,27639254,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,32,0,27639222,27639254 +6 + chr14 27639254 27639438 chr14,27639254,27639438,+,MIRb,SINE,MIR,20,207,-61,27639235,27639499 +6 + chr14 28318141 28318523 chr14,28312502,28318523,-,L1PA2,LINE,L1,0,6155,130,28312502,28318652 -1 - chr14 28418544 28418612 chr14,28417868,28419776,+,HERVK3-int,LTR,ERVK,4470,6381,-821,28413399,28420597 +5 + chr14 28613459 28613623 chr14,28613407,28613767,-,MLT1I,LTR,ERVL-MaLR,-39,372,51,28613368,28613817 +1 - chr14 28729083 28729122 chr14,28729068,28729122,+,MamGypLTR1d,LTR,Gypsy,476,529,-284,28728593,28729406 -5 + chr14 28729402 28729556 chr14,28729394,28729791,-,MER70C,LTR,ERVL,-128,403,3,28729266,28729793 +5 - chr14 28738809 28738844 chr14,28738809,28738939,+,MIRb,SINE,MIR,103,236,-32,28738707,28738971 -2 + chr14 28741834 28741959 chr14,28741801,28741986,+,AluJr,SINE,Alu,121,306,-6,28741681,28741992 -3 + chr14 28786488 28786537 chr14,28786433,28786729,-,AluSx1,SINE,Alu,-3,309,4,28786430,28786732 -3 - chr14 28792099 28792134 chr14,28792099,28792134,+,(AAAC)n,Simple_repeat,Simple_repeat,1,38,0,28792099,28792134 +6 + chr14 28792290 28792598 chr14,28792290,28792598,+,AluYb8,SINE,Alu,1,308,-10,28792290,28792608 +6 + chr14 28793204 28793234 chr14,28793204,28793628,+,MamRep605,LTR?,LTR?,38,504,-345,28793167,28793973 +5 + chr14 28812973 28813250 chr14,28812941,28813250,-,AluY,SINE,Alu,-2,309,1,28812939,28813250 -2 - chr14 28818945 28819258 chr14,28818945,28820633,+,L1MC3,LINE,L1,6026,7778,-7,28812920,28820640 +5 + chr14 28819600 28819677 chr14,28818945,28820633,+,L1MC3,LINE,L1,6026,7778,-7,28812920,28820640 -5 + chr14 28824856 28824947 chr14,28824704,28825984,-,L1MC4,LINE,L1,-468,7574,6072,28824236,28832055 +3 - chr14 28830244 28830430 chr14,28830132,28830430,-,AluY,SINE,Alu,-14,297,1,28830118,28830430 -1 - chr14 28830132 28830204 chr14,28830132,28830430,-,AluY,SINE,Alu,-14,297,1,28830118,28830430 +1 - chr14 28834797 28834820 chr14,28834593,28834967,-,L3,LINE,CR1,-1,4098,3671,28834592,28838637 -3 - chr14 28837253 28837364 chr14,28837193,28837364,+,L2a,LINE,L2,3241,3426,0,28833953,28837364 +2 + chr14 28837407 28837717 chr14,28837407,28838079,+,LTR41B,LTR,ERVL,1,720,-38,28837407,28838117 +5 + chr14 28841804 28841856 chr14,28841286,28841856,-,MLT1E2,LTR,ERVL-MaLR,-2,625,2,28841284,28841857 -2 - chr14 28842058 28842115 chr14,28842058,28842115,+,HAL1ME,LINE,L1,1751,1806,-659,28840308,28842774 +5 + chr14 28931570 28931622 chr14,28931397,28932018,-,LTR67B,LTR,ERVL,0,620,2,28931397,28932019 -1 - chr14 28968073 28968400 chr14,28967867,28968442,+,MLT1F2,LTR,ERVL-MaLR,6,560,0,28967862,28968442 +5 + chr14 28976113 28976238 chr14,28976113,28976323,+,MIR1_Amn,SINE,MIR,2,230,0,28976112,28976323 -2 + chr14 28977137 28977241 chr14,28977114,28977430,+,MLT1D,LTR,ERVL-MaLR,158,505,0,28976957,28977430 -3 + chr14 28986400 28986536 chr14,28986215,28986574,+,THE1A,LTR,ERVL-MaLR,1,355,0,28986215,28986574 +3 + chr14 29018953 29019087 chr14,29018843,29019164,+,L2,LINE,L2,2577,2900,-519,29016267,29019683 +3 + chr14 29028649 29028763 chr14,29022832,29029502,-,L1PA5,LINE,L1,0,6154,8,29022832,29029509 -5 - chr14 29264381 29264630 chr14,29264179,29264630,+,MLT2B2,LTR,ERVL,3,508,-7,29264177,29264637 -5 + chr14 29267750 29267774 chr14,29267750,29267868,+,L1M5,LINE,L1,4450,4569,-1577,29263301,29269445 -2 + chr14 29309180 29309317 chr14,29309068,29309345,+,AluSx1,SINE,Alu,13,303,-9,29309056,29309354 -3 + chr14 29317956 29318002 chr14,29317890,29319726,+,ERVL-B4-int,LTR,ERVL,1509,3384,-2330,29316382,29322056 -3 + chr14 29381181 29381295 chr14,29380974,29381354,+,UCON31,Unknown,Unknown,85,453,-1,29380890,29381355 -1 + chr14 29408848 29408965 chr14,29408681,29409048,+,THE1D,LTR,ERVL-MaLR,10,381,0,29408672,29409048 +3 + chr14 29657584 29657893 chr14,29657584,29657893,+,AluY,SINE,Alu,1,308,-3,29657584,29657896 +6 + chr14 29940745 29940849 chr14,29940519,29940931,+,MSTA,LTR,ERVL-MaLR,1,428,0,29940519,29940931 +1 + chr14 29965323 29965502 chr14,29965319,29965551,+,Tigger2a,DNA,TcMar-Tigger,1,229,-205,29965319,29965756 +3 + chr14 29972669 29973233 chr14,29972061,29978485,+,L1PA8,LINE,L1,35,6353,-4,29972027,29978489 -5 + chr14 29980210 29980239 chr14,29980210,29980239,+,(TTTTC)n,Simple_repeat,Simple_repeat,1,29,0,29980210,29980239 -5 + chr14 30167834 30168200 chr14,30167785,30168200,-,MSTA,LTR,ERVL-MaLR,0,428,1,30167785,30168200 +5 - chr14 30168200 30168357 chr14,30168200,30169822,-,MSTA-int,LTR,ERVL-MaLR,0,1651,1,30168200,30169822 +2 - chr14 30203932 30204053 chr14,30203844,30204097,-,LTR33B,LTR,ERVL,-2,501,259,30203842,30204355 +3 - chr14 30205534 30205624 chr14,30205504,30205624,+,MLT1J2,LTR,ERVL-MaLR,1,128,-316,30205504,30205940 -4 + chr14 30296934 30297043 chr14,30296851,30297229,-,MSTA,LTR,ERVL-MaLR,0,428,1,30296851,30297229 +1 - chr14 30370376 30370569 chr14,30370376,30370569,+,MIRc,SINE,MIR,30,220,-48,30370347,30370617 +6 + chr14 30370587 30370686 chr14,30370587,30370686,+,L2c,LINE,L2,3282,3379,-8,30367306,30370694 +6 + chr14 30372355 30372481 chr14,30372355,30372481,-,L1ME4a,LINE,L1,-202,5922,5796,30372153,30378276 -6 - chr14 30372905 30372979 chr14,30372905,30372979,-,L2a,LINE,L2,0,3426,3350,30372905,30376328 -6 - chr14 30451868 30451965 chr14,30451711,30452007,+,AluSc8,SINE,Alu,1,296,-15,30451711,30452022 -3 + chr14 30469176 30469354 chr14,30469174,30469658,+,MLT2B1,LTR,ERVL,1,493,-27,30469174,30469685 -5 + chr14 30474044 30474227 chr14,30474044,30480062,+,L1PA3,LINE,L1,129,6154,-1,30473916,30480063 -1 + chr14 30492719 30492821 chr14,30492696,30493000,+,AluJr4,SINE,Alu,1,289,-23,30492696,30493023 -3 + chr14 30560737 30560835 chr14,30560702,30560836,-,MER5A,DNA,hAT-Charlie,0,189,58,30560702,30560893 +3 - chr14 30573507 30573629 chr14,30573456,30573923,-,MLT2B1,LTR,ERVL,-43,477,2,30573413,30573924 +1 - chr14 30781949 30781964 chr14,30781811,30781964,+,L2,LINE,L2,2020,2175,-1244,30779792,30783208 -4 + chr14 30781967 30781996 chr14,30781967,30782140,+,L1MB7,LINE,L1,5088,5279,-867,30776880,30783007 -2 + chr14 30822495 30822591 chr14,30822084,30822591,+,LTR53,LTR,ERVL,8,519,0,30822077,30822591 -4 + chr14 30822668 30822702 chr14,30822668,30822852,-,MER102b,DNA,hAT-Charlie,-54,287,92,30822614,30822943 +1 - chr14 30876516 30876552 chr14,30876516,30876563,+,MIR3,SINE,MIR,92,144,-64,30876425,30876627 -2 + chr14 30889237 30889277 chr14,30889237,30889404,-,L1M5,LINE,L1,-2098,4048,3852,30887139,30893255 +2 - chr14 30889384 30889404 chr14,30889237,30889404,-,L1M5,LINE,L1,-2098,4048,3852,30887139,30893255 +4 - chr14 31248628 31248691 chr14,31247713,31250669,-,HERVH-int,LTR,ERV1,-4718,2995,1,31242995,31250669 -1 - chr14 31272894 31272966 chr14,31272630,31273001,+,MER4-int,LTR,ERV1,1838,2224,-4107,31270793,31277108 +3 + chr14 31279012 31279134 chr14,31278799,31279416,+,MER4-int,LTR,ERV1,5047,5905,-693,31273753,31280109 +3 + chr14 31295432 31295527 chr14,31295255,31295549,-,AluJb,SINE,Alu,-22,290,1,31295233,31295549 -3 - chr14 31420928 31420977 chr14,31420928,31421076,-,MIR3,SINE,MIR,-18,190,12,31420910,31421087 -1 - chr14 31421844 31421968 chr14,31421820,31422007,-,FAM,SINE,Alu,-6,179,5,31421814,31422011 -3 - chr14 31452107 31452460 chr14,31452021,31452460,+,LTR86A1,LTR,ERVL,18,513,0,31452004,31452460 +2 + chr14 31452591 31452869 chr14,31452591,31452869,+,L1MA5,LINE,L1,6009,6300,0,31446583,31452869 +6 + chr14 31553358 31553630 chr14,31553312,31553805,-,MLT1F2,LTR,ERVL-MaLR,-1,559,10,31553311,31553814 +5 - chr14 31558418 31558498 chr14,31558336,31558746,-,MLT1O,LTR,ERVL-MaLR,-20,522,101,31558316,31558846 +1 - chr14 31558507 31558570 chr14,31558336,31558746,-,MLT1O,LTR,ERVL-MaLR,-20,522,101,31558316,31558846 +1 - chr14 31561111 31561275 chr14,31561069,31561275,+,MIRc,SINE,MIR,44,251,-17,31561026,31561292 -4 + chr14 31929380 31930146 chr14,31929231,31930187,-,MamGypLTR3a,LTR,Gypsy,0,981,1,31929231,31930187 +1 - chr14 32075097 32075173 chr14,32075097,32075173,+,(TTCCT)n,Simple_repeat,Simple_repeat,1,82,0,32075097,32075173 -6 + chr14 32075795 32075883 chr14,32075795,32075883,+,MIR3,SINE,MIR,87,192,-16,32075709,32075899 -6 + chr14 32076734 32076786 chr14,32076734,32076786,+,G-rich,Low_complexity,Low_complexity,1,53,0,32076734,32076786 -6 + chr14 32373337 32373545 chr14,32373115,32373797,-,LTR8,LTR,ERV1,0,691,1,32373115,32373797 +5 - chr14 32376002 32376042 chr14,32376002,32376206,-,MER103C,DNA,hAT-Charlie,-7,290,82,32375995,32376287 +2 - chr14 32403095 32403229 chr14,32403095,32403229,+,Charlie4z,DNA,hAT-Charlie,2,147,-20,32403094,32403249 -6 + chr14 32879246 32879792 chr14,32879223,32879792,+,L2b,LINE,L2,2792,3367,-8,32876432,32879800 +1 + chr14 32879799 32879824 chr14,32879799,32879824,+,(AGAAAA)n,Simple_repeat,Simple_repeat,1,25,0,32879799,32879824 +6 + chr14 32879859 32879897 chr14,32879859,32879897,+,(AAAT)n,Simple_repeat,Simple_repeat,1,39,0,32879859,32879897 +6 + chr14 32880026 32880302 chr14,32880026,32880302,+,(TTTC)n,Simple_repeat,Simple_repeat,1,281,0,32880026,32880302 +6 + chr14 32880304 32880459 chr14,32880304,32880459,-,AluJb,SINE,Alu,-33,279,131,32880271,32880589 -6 - chr14 32880471 32880526 chr14,32880471,32880526,-,FLAM_C,SINE,Alu,-86,47,1,32880385,32880526 -6 - chr14 32880540 32881081 chr14,32880540,32881081,+,L1MA2,LINE,L1,5766,6304,0,32874775,32881081 +6 + chr14 32881097 32881222 chr14,32881097,32881222,+,L1MA2,LINE,L1,6171,6297,-7,32874927,32881229 +6 + chr14 32881235 32881311 chr14,32881235,32881311,-,MIRc,SINE,MIR,-128,140,64,32881107,32881374 -6 - chr14 32881777 32882171 chr14,32881777,32882171,+,Tigger11a,DNA,TcMar-Tigger,4,417,-318,32881774,32882489 +6 + chr14 32882394 32882830 chr14,32882394,32883033,-,L1ME1,LINE,L1,0,6179,5495,32882394,32888527 -5 - chr14 34541508 34541714 chr14,34541508,34541740,+,MIRc,SINE,MIR,9,263,-5,34541500,34541745 +5 + chr14 34541925 34541998 chr14,34541925,34542174,+,Tigger7,DNA,TcMar-Tigger,1,261,-2230,34541925,34544404 -2 + chr14 34542082 34542174 chr14,34541925,34542174,+,Tigger7,DNA,TcMar-Tigger,1,261,-2230,34541925,34544404 -4 + chr14 34542199 34542341 chr14,34542199,34542341,+,AluSq2,SINE,Alu,1,133,-180,34542199,34542521 -6 + chr14 34542341 34542444 chr14,34542341,34542638,+,AluY,SINE,Alu,1,297,-14,34542341,34542652 -1 + chr14 34546110 34546136 chr14,34546110,34546136,+,(TCGC)n,Simple_repeat,Simple_repeat,1,26,0,34546110,34546136 -6 + chr14 34546136 34546329 chr14,34546136,34546334,+,(CT)n,Simple_repeat,Simple_repeat,1,206,0,34546136,34546334 -1 + chr14 34556774 34556966 chr14,34556768,34556966,+,GA-rich,Low_complexity,Low_complexity,1,206,0,34556768,34556966 +1 + chr14 34556966 34556992 chr14,34556966,34556992,+,(GAGC)n,Simple_repeat,Simple_repeat,1,26,0,34556966,34556992 +6 + chr14 34559976 34560166 chr14,34559976,34560242,+,MLT1J,LTR,ERVL-MaLR,230,508,-4,34559747,34560246 +4 + chr14 34560781 34560915 chr14,34560773,34560915,-,AluSq2,SINE,Alu,-180,133,1,34560593,34560915 -1 - chr14 34560940 34561033 chr14,34560940,34561189,-,Tigger7,DNA,TcMar-Tigger,-2230,261,1,34558710,34561189 -4 - chr14 34561117 34561189 chr14,34560940,34561189,-,Tigger7,DNA,TcMar-Tigger,-2230,261,1,34558710,34561189 -2 - chr14 34874606 34874654 chr14,34874606,34874654,+,(CCCG)n,Simple_repeat,Simple_repeat,1,48,0,34874606,34874654 +6 + chr14 34875677 34875706 chr14,34875677,34875706,+,A-rich,Low_complexity,Low_complexity,1,29,0,34875677,34875706 +6 + chr14 34926386 34926527 chr14,34926223,34926754,-,L3,LINE,CR1,-836,3263,2646,34925387,34929399 +3 - chr14 34934017 34934131 chr14,34933870,34934166,+,AluSc,SINE,Alu,1,307,-2,34933870,34934168 -3 + chr14 35086035 35086093 chr14,35086021,35086093,-,MIR3,SINE,MIR,-61,147,64,35085960,35086156 -1 - chr14 35086185 35086498 chr14,35086185,35086498,-,AluSz,SINE,Alu,0,312,1,35086185,35086498 -6 - chr14 35086498 35086797 chr14,35086498,35086797,-,AluSp,SINE,Alu,-14,299,1,35086484,35086797 -6 - chr14 35086799 35086964 chr14,35086799,35086964,-,AluSx,SINE,Alu,-12,300,134,35086787,35087097 -6 - chr14 35087398 35087699 chr14,35087398,35087699,-,AluSq,SINE,Alu,-12,301,1,35087386,35087699 -6 - chr14 35362232 35362305 chr14,35362228,35362305,+,(TTCT)n,Simple_repeat,Simple_repeat,1,79,0,35362228,35362305 -5 + chr14 35447204 35447585 chr14,35447111,35447585,-,MLT2A2,LTR,ERVL,0,554,98,35447111,35447682 +4 - chr14 35447585 35447625 chr14,35447585,35447883,+,AluSx1,SINE,Alu,1,297,-15,35447585,35447898 -1 + chr14 35819224 35819510 chr14,35819205,35819510,-,AluJb,SINE,Alu,-11,301,1,35819194,35819510 +5 - chr14 35819510 35819740 chr14,35819510,35819740,+,L1ME3Cz,LINE,L1,455,664,-333,35819056,35820073 -6 + chr14 35824823 35825632 chr14,35823971,35825632,-,SVA_A,Retroposon,SVA,-18,1369,1,35823953,35825632 +4 - chr14 35874780 35874794 chr14,35874484,35874794,-,AluSg,SINE,Alu,0,310,1,35874484,35874794 -2 - chr14 35874794 35874882 chr14,35874794,35874882,+,MLT1B,LTR,ERVL-MaLR,26,114,-276,35874769,35875158 +6 + chr14 35874862 35874994 chr14,35874862,35874994,+,MLT1B,LTR,ERVL-MaLR,248,388,-2,35874615,35874996 +6 + chr14 35875106 35875142 chr14,35875106,35875142,-,Alu,SINE,Alu,-97,36,1,35875009,35875142 -6 - chr14 35897982 35898095 chr14,35896805,35898919,-,L1M2,LINE,L1,-4866,2700,727,35891939,35899645 -1 - chr14 35898713 35898840 chr14,35896805,35898919,-,L1M2,LINE,L1,-4866,2700,727,35891939,35899645 -1 - chr14 35947558 35947689 chr14,35947558,35947689,+,FLAM_C,SINE,Alu,1,131,-12,35947558,35947701 -6 + chr14 35947771 35947902 chr14,35947771,35947902,-,MIRc,SINE,MIR,-136,132,2,35947635,35947903 +6 - chr14 35949943 35949968 chr14,35949943,35949968,+,(TCTTT)n,Simple_repeat,Simple_repeat,1,26,0,35949943,35949968 -6 + chr14 35949989 35950044 chr14,35949989,35950211,+,UCON105,Unknown,Unknown,42,254,-19,35949948,35950230 -1 + chr14 35998438 35998548 chr14,35998438,35998548,-,LTR79,LTR,ERVL,-286,241,120,35998152,35998667 -6 - chr14 36061026 36061050 chr14,36060883,36061050,-,LTR85c,LTR,Gypsy?,-13,810,639,36060870,36061688 +5 - chr14 36061103 36061163 chr14,36061103,36061232,-,LTR85c,LTR,Gypsy?,-286,537,406,36060817,36061637 +2 - chr14 36063327 36063528 chr14,36063136,36063528,-,L1ME2,LINE,L1,-13,6151,5712,36063123,36069239 +4 - chr14 36067086 36067190 chr14,36067086,36067349,+,MLT1G,LTR,ERVL-MaLR,1,269,-279,36067086,36067628 -1 + chr14 36136108 36136328 chr14,36135930,36136328,-,MLT2A1,LTR,ERVL,-40,404,1,36135890,36136328 +5 - chr14 36153804 36153894 chr14,36153784,36154080,+,AluJb,SINE,Alu,2,296,-16,36153783,36154096 -3 + chr14 36162624 36162683 chr14,36157673,36162691,-,L1PA7,LINE,L1,-1411,5050,1,36156262,36162691 +3 - chr14 36235324 36235583 chr14,36235303,36235583,-,AluJb,SINE,Alu,-17,295,1,36235286,36235583 -2 - chr14 36519374 36519421 chr14,36519374,36519421,+,GA-rich,Low_complexity,Low_complexity,1,47,0,36519374,36519421 +6 + chr14 36522100 36522206 chr14,36522100,36522206,+,MIRc,SINE,MIR,114,236,-32,36521987,36522238 +6 + chr14 36647370 36647451 chr14,36647370,36647451,+,(GCCTGGC)n,Simple_repeat,Simple_repeat,1,84,0,36647370,36647451 -6 + chr14 36828422 36828676 chr14,36828246,36828676,+,MLT1J2,LTR,ERVL-MaLR,54,448,0,36828193,36828676 +2 + chr14 37097103 37097182 chr14,37097103,37097399,-,AluSz6,SINE,Alu,-15,297,1,37097088,37097399 +2 - chr14 37097857 37097895 chr14,37097600,37097895,+,AluSq2,SINE,Alu,1,295,-18,37097600,37097913 -4 + chr14 37097895 37098057 chr14,37097895,37098057,+,L1MC4,LINE,L1,7906,8041,-1,37089990,37098058 -6 + chr14 37098277 37098535 chr14,37098277,37098535,+,MIR3,SINE,MIR,5,181,-87,37098273,37098622 -6 + chr14 37173055 37173231 chr14,37173055,37173231,+,MER5A,DNA,hAT-Charlie,1,189,0,37173055,37173231 +6 + chr14 37173526 37173606 chr14,37173526,37173606,-,MADE2,DNA,TcMar-Mariner,0,80,2,37173526,37173607 -6 - chr14 37556158 37556367 chr14,37554670,37556526,-,SVA_D,Retroposon,SVA,-20,1366,57,37554650,37556582 +5 - chr14 37564108 37564157 chr14,37564108,37564157,-,L2a,LINE,L2,-10,3416,3319,37564098,37567475 -6 - chr14 37564287 37564330 chr14,37564287,37564330,+,GA-rich,Low_complexity,Low_complexity,1,46,0,37564287,37564330 +6 + chr14 37566943 37567095 chr14,37566905,37567195,+,AmnSINE2,SINE,tRNA-Deu,52,349,-9,37566854,37567204 -1 + chr14 37578704 37578810 chr14,37578677,37578810,-,L2,LINE,L2,-1884,1535,1383,37576793,37580192 -2 - chr14 37896886 37897218 chr14,37896886,37897218,+,MER57E1,LTR,ERV1,1,372,0,37896886,37897218 -6 + chr14 37897953 37898226 chr14,37897953,37898226,+,L1MC5a,LINE,L1,602,896,-1881,37897352,37900107 -6 + chr14 37898477 37898612 chr14,37898477,37898612,+,MER117,DNA,hAT-Charlie,56,190,-7,37898422,37898619 -6 + chr14 37900876 37901109 chr14,37900291,37901109,+,Charlie10,DNA,hAT-Charlie,2033,2819,-3,37898259,37901112 -5 + chr14 38004830 38004847 chr14,38004830,38004939,+,MIRc,SINE,MIR,115,241,-27,38004716,38004966 -1 + chr14 38034287 38034693 chr14,38033813,38035705,-,Tigger1,DNA,TcMar-Tigger,-347,2071,82,38033466,38035786 +5 - chr14 38036803 38036854 chr14,38036670,38036980,+,MER113,DNA,hAT-Charlie,180,514,-7,38036491,38036987 -3 + chr14 38168340 38168371 chr14,38168300,38168371,+,MLT2B4,LTR,ERVL,640,721,-3,38167661,38168374 -4 + chr14 38190983 38191083 chr14,38190637,38191083,+,LTR7,LTR,ERV1,1,448,-2,38190637,38191085 +1 + chr14 38193184 38193323 chr14,38191085,38194338,+,HERVH-int,LTR,ERV1,1,3290,-4423,38191085,38198761 +1 + chr14 38194142 38194281 chr14,38191085,38194338,+,HERVH-int,LTR,ERV1,1,3290,-4423,38191085,38198761 -1 + chr14 38191085 38191231 chr14,38191085,38194338,+,HERVH-int,LTR,ERV1,1,3290,-4423,38191085,38198761 +1 + chr14 38292227 38292371 chr14,38292227,38292421,-,MLT1G,LTR,ERVL-MaLR,-403,188,2,38291824,38292422 -4 - chr14 38298752 38298811 chr14,38298752,38299213,+,L1MCa,LINE,L1,1,441,-6067,38298752,38305280 +4 + chr14 38916782 38916882 chr14,38916700,38917070,-,THE1B,LTR,ERVL-MaLR,-2,362,1,38916698,38917070 +3 - chr14 38941354 38941373 chr14,38941350,38941489,+,HAL1,LINE,L1,39,178,-2329,38941312,38943818 -3 + chr14 38941622 38941695 chr14,38941622,38941848,+,HAL1,LINE,L1,434,681,-1826,38941189,38943674 -2 + chr14 38948178 38948271 chr14,38947953,38948271,-,Tigger2a,DNA,TcMar-Tigger,-1,433,46,38947952,38948316 +1 - chr14 39103688 39103808 chr14,39103688,39103808,-,L2a,LINE,L2,-1,3425,3304,39103687,39107111 -6 - chr14 39265902 39265967 chr14,39265902,39265967,+,MamRTE1,LINE,RTE-BovB,2491,2560,-1252,39263412,39267219 -6 + chr14 39266881 39266906 chr14,39266881,39266906,+,(CGC)n,Simple_repeat,Simple_repeat,1,25,0,39266881,39266906 -6 + chr14 39474840 39474955 chr14,39474624,39475115,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,39474624,39475115 +1 + chr14 39485017 39485200 chr14,39484305,39485200,-,ERV3-16A3_I-int,LTR,ERVL,-50,5176,4288,39484255,39489487 -2 - chr14 39485206 39485257 chr14,39485206,39485426,+,ERV3-16A3_I-int,LTR,ERVL,3779,4012,-1214,39481428,39486640 +4 + chr14 39492258 39492635 chr14,39492258,39492635,-,MSTD,LTR,ERVL-MaLR,0,396,1,39492258,39492635 -6 - chr14 39492711 39492770 chr14,39492711,39492855,-,L1ME2z,LINE,L1,-6,6438,6283,39492705,39499137 -5 - chr14 39493398 39493494 chr14,39493398,39493494,+,L2c,LINE,L2,3286,3376,-11,39490113,39493505 +6 + chr14 40386372 40386443 chr14,40386372,40386489,+,MLT1L,LTR,ERVL-MaLR,493,610,0,40385880,40386489 +4 + chr14 40387764 40387937 chr14,40387764,40387937,+,MIRc,SINE,MIR,82,253,-15,40387683,40387952 +6 + chr14 40387942 40388040 chr14,40387942,40388246,-,AluY,SINE,Alu,-9,302,1,40387933,40388246 -4 - chr14 40389077 40389140 chr14,40389017,40389304,+,AluJo,SINE,Alu,1,297,-15,40389017,40389319 +5 + chr14 40954898 40954934 chr14,40948916,40954934,-,L1PA3,LINE,L1,-5,6150,127,40948911,40955060 -1 - chr14 40954934 40954952 chr14,40954934,40956059,-,L1PA15,LINE,L1,-477,5688,4610,40954457,40960668 -4 - chr14 40974340 40974390 chr14,40974274,40974625,-,MLT1A0,LTR,ERVL-MaLR,-11,354,1,40974263,40974625 -3 - chr14 40975341 40975434 chr14,40975004,40975434,-,MLT1F,LTR,ERVL-MaLR,-78,482,1,40974926,40975434 -2 - chr14 40975441 40975482 chr14,40975441,40975482,+,(TTAT)n,Simple_repeat,Simple_repeat,1,42,0,40975441,40975482 +6 + chr14 40975749 40975877 chr14,40975749,40975884,-,MIR3,SINE,MIR,-39,169,17,40975710,40975900 -5 - chr14 41587861 41588287 chr14,41587646,41588289,-,L1PB,LINE,L1,-632,5519,4866,41587014,41593154 +5 - chr14 42268492 42268586 chr14,42267656,42270592,-,MER57-int,LTR,ERV1,-621,6916,4035,42267035,42274626 +1 - chr14 42362983 42363000 chr14,42362724,42363010,-,AluJr,SINE,Alu,-20,292,11,42362704,42363020 -1 - chr14 42394945 42395092 chr14,42394728,42395269,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,42394728,42395269 +3 + chr14 42412573 42413206 chr14,42412250,42413392,-,L1M4,LINE,L1,-6313,1204,24,42405937,42413415 -1 - chr14 44049386 44049470 chr14,44049386,44049470,-,MLT1O,LTR,ERVL-MaLR,-177,365,272,44049209,44049741 +6 - chr14 44384477 44384509 chr14,44383838,44384509,-,MER61-int,LTR,ERV1,-4443,774,1,44379395,44384509 +4 - chr14 44384509 44384545 chr14,44384509,44384559,-,MER61A,LTR,ERV1,0,341,292,44384509,44384850 +1 - chr14 44392608 44392690 chr14,44392608,44392816,+,MIR,SINE,MIR,52,262,0,44392557,44392816 -2 + chr14 44393609 44393716 chr14,44393544,44394178,-,Tigger13a,DNA,TcMar-Tigger,-80,691,44,44393464,44394221 +1 - chr14 44444747 44444758 chr14,44444370,44444758,+,L1ME1,LINE,L1,5691,6086,-93,44438680,44444851 -5 + chr14 44444758 44444822 chr14,44444758,44445070,+,MER44A,DNA,TcMar-Tigger,1,339,0,44444758,44445070 -2 + chr14 44478720 44478739 chr14,44478353,44478739,+,L4_A_Mam,LINE,RTE-X,3875,4315,-675,44474479,44479414 -4 + chr14 44480565 44480618 chr14,44480565,44480748,+,MER5A,DNA,hAT-Charlie,7,187,-2,44480559,44480750 -1 + chr14 44508652 44508729 chr14,44508605,44509080,+,Tigger1,DNA,TcMar-Tigger,1,478,-1940,44508605,44511020 +1 + chr14 44508969 44509080 chr14,44508605,44509080,+,Tigger1,DNA,TcMar-Tigger,1,478,-1940,44508605,44511020 +1 + chr14 44509075 44509231 chr14,44509075,44509756,+,Tigger1,DNA,TcMar-Tigger,1373,2071,-347,44507703,44510103 +5 + chr14 44509327 44509483 chr14,44509075,44509756,+,Tigger1,DNA,TcMar-Tigger,1373,2071,-347,44507703,44510103 +5 + chr14 44763511 44763853 chr14,44763511,44763853,+,L1MA9,LINE,L1,5961,6308,-4,44757551,44763857 -6 + chr14 44763952 44764081 chr14,44763952,44764081,-,L2c,LINE,L2,-5,3382,3209,44763947,44767289 +6 - chr14 44764526 44764865 chr14,44764526,44764865,+,Charlie3,DNA,hAT-Charlie,2378,2706,0,44762149,44764865 -6 + chr14 44765279 44765327 chr14,44765279,44765327,+,(ATTTTAA)n,Simple_repeat,Simple_repeat,1,48,0,44765279,44765327 -6 + chr14 44768022 44768129 chr14,44768022,44768151,+,FLAM_C,SINE,Alu,1,133,-10,44768022,44768161 -2 + chr14 44782555 44782755 chr14,44782550,44782755,+,AluJo,SINE,Alu,61,267,-45,44782490,44782800 -4 + chr14 44876922 44877060 chr14,44876922,44877060,-,MLT1F2,LTR,ERVL-MaLR,-38,589,397,44876884,44877456 +6 - chr14 44877082 44877500 chr14,44877082,44878587,+,L1MA3,LINE,L1,940,2498,-5067,44876143,44883654 -2 + chr14 44911757 44911783 chr14,44911602,44911783,-,L2c,LINE,L2,-3,3384,3182,44911599,44914964 +4 - chr14 45079965 45080158 chr14,45079965,45080158,-,LTR33,LTR,ERVL,-296,219,12,45079669,45080169 -6 - chr14 45083166 45083387 chr14,45083166,45083652,+,MER31A,LTR,ERV1,3,485,0,45083164,45083652 -2 + chr14 45083472 45083652 chr14,45083166,45083652,+,MER31A,LTR,ERV1,3,485,0,45083164,45083652 -4 + chr14 45369325 45369451 chr14,45369325,45369451,+,MIRc,SINE,MIR,19,148,-120,45369307,45369571 +6 + chr14 45369736 45369797 chr14,45369736,45369797,+,L2c,LINE,L2,3324,3384,-3,45366413,45369800 +6 + chr14 45388991 45389286 chr14,45388991,45389764,+,SVA_F,Retroposon,SVA,421,857,-518,45388571,45390282 +5 + chr14 45567995 45568095 chr14,45567139,45568255,-,L1MEg,LINE,L1,-4967,1117,1,45562172,45568255 -1 - chr14 45569035 45569069 chr14,45569035,45570678,+,L1PA7,LINE,L1,4494,6139,-15,45564542,45570693 +5 + chr14 45714284 45714304 chr14,45714250,45714304,-,HERVK14-int,LTR,ERVK,-82,6014,5961,45714168,45720264 +4 - chr14 45714292 45714453 chr14,45714292,45714851,-,HERVK14-int,LTR,ERVK,-500,5596,5124,45713792,45719974 +1 - chr14 45715350 45715445 chr14,45715256,45715445,-,HERVK14-int,LTR,ERVK,-6970,232,28,45708286,45715472 +4 - chr14 45715496 45715567 chr14,45715496,45715567,+,(TGCTAGTCTT)n,Simple_repeat,Simple_repeat,1,71,0,45715496,45715567 -6 + chr14 45715629 45715680 chr14,45715629,45715680,+,(TATCTCTATT)n,Simple_repeat,Simple_repeat,1,51,0,45715629,45715680 -6 + chr14 45715770 45715952 chr14,45715770,45716282,-,LTR3B_,LTR,ERVK,0,499,1,45715770,45716282 +1 - chr14 45940943 45941018 chr14,45940863,45941235,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,45940863,45941235 -1 - chr14 46064159 46064216 chr14,46063782,46064404,-,LTR9,LTR,ERV1,0,612,1,46063782,46064404 -1 - chr14 46210824 46210939 chr14,46210745,46211093,-,MLT1A0,LTR,ERVL-MaLR,0,365,9,46210745,46211101 -3 - chr14 46211747 46211804 chr14,46211507,46211881,+,MSTA,LTR,ERVL-MaLR,1,428,0,46211507,46211881 +3 + chr14 46438182 46438250 chr14,46438182,46441591,+,L1PA7,LINE,L1,1,3412,-3049,46438182,46444640 +4 + chr14 46446185 46446226 chr14,46446157,46446274,+,MER110A,LTR,ERV1,368,468,0,46445790,46446274 +3 + chr14 47764954 47765037 chr14,47764542,47765037,-,Tigger2,DNA,TcMar-Tigger,0,2718,2267,47764542,47767303 +5 - chr14 47765130 47765564 chr14,47765130,47765564,+,L1MEc,LINE,L1,4650,5107,-1212,47760481,47766776 -6 + chr14 47765684 47765739 chr14,47765684,47765739,+,LTR53-int,LTR,ERVL,1844,1898,-1431,47763841,47767170 -6 + chr14 47765763 47765824 chr14,47765763,47765824,-,Tigger19a,DNA,TcMar-Tigger,-150,173,110,47765613,47765933 +6 - chr14 47765876 47766416 chr14,47765876,47766416,-,MLT2A2,LTR,ERVL,-7,547,2,47765869,47766417 +6 - chr14 47766448 47766621 chr14,47766448,47766621,+,ERV3-16A3_I-int,LTR,ERVL,4112,4292,-1422,47762337,47768043 -6 + chr14 47766752 47767309 chr14,47766752,47767309,+,ERV3-16A3_I-int,LTR,ERVL,4475,5045,-181,47762278,47767490 -5 + chr14 47767309 47767671 chr14,47767309,47767671,-,MLT1A,LTR,ERVL-MaLR,0,374,1,47767309,47767671 +5 - chr14 47767671 47767757 chr14,47767671,47767839,+,ERV3-16A3_I-int,LTR,ERVL,5046,5213,-13,47762626,47767852 -2 + chr14 47789906 47789943 chr14,47789873,47790068,-,LTR16B1,LTR,ERVL,-2,478,276,47789871,47790343 +1 - chr14 47794972 47795092 chr14,47794965,47800647,+,L1PA2,LINE,L1,463,6152,-3,47794503,47800650 -1 + chr14 48396508 48396550 chr14,48396458,48396575,+,MSTA-int,LTR,ERVL-MaLR,2,120,-1511,48396457,48398086 -5 + chr14 48429186 48429243 chr14,48429175,48430006,+,L1MCa,LINE,L1,351,1251,-5257,48428825,48435263 -3 + chr14 48431928 48431966 chr14,48431805,48431966,+,L1MCa,LINE,L1,1410,1563,-4945,48430396,48436911 -4 + chr14 48431974 48432051 chr14,48431974,48432282,+,L1PA13,LINE,L1,95,403,-6464,48431880,48438746 -2 + chr14 48491645 48491767 chr14,48491607,48491786,+,L1MEf,LINE,L1,268,449,-5645,48491340,48497431 -1 + chr14 49057721 49057786 chr14,49057721,49057786,-,MIR,SINE,MIR,-3,259,194,49057718,49057979 +6 - chr14 49069792 49069915 chr14,49069656,49074688,+,L1M1,LINE,L1,19,5212,-2353,49069638,49077041 -3 + chr14 49070873 49070982 chr14,49069656,49074688,+,L1M1,LINE,L1,19,5212,-2353,49069638,49077041 -3 + chr14 49077456 49077505 chr14,49076749,49078779,+,L1M5,LINE,L1,2502,4587,-1559,49074248,49080338 -1 + chr14 49586579 49586878 chr14,49586579,49586879,+,7SLRNA,srpRNA,srpRNA,1,300,-20,49586579,49586899 +5 + chr14 49629291 49629466 chr14,49629275,49629466,-,AluJr,SINE,Alu,-9,303,129,49629266,49629594 +5 - chr14 49629466 49629555 chr14,49629466,49629674,+,AluSz,SINE,Alu,1,293,-19,49629466,49629693 -2 + chr14 49629755 49629805 chr14,49629674,49629805,-,AluJr,SINE,Alu,-184,128,1,49629490,49629805 +4 - chr14 49707667 49707764 chr14,49707646,49707955,-,AluJo,SINE,Alu,-10,302,1,49707636,49707955 +5 - chr14 49708323 49708347 chr14,49708070,49708347,-,AluSx,SINE,Alu,-12,300,27,49708058,49708373 +4 - chr14 49708648 49708703 chr14,49708648,49708703,+,L2a,LINE,L2,3369,3425,-1,49705280,49708704 -6 + chr14 49853618 49853914 chr14,49853614,49853914,-,7SLRNA,srpRNA,srpRNA,-20,300,1,49853594,49853914 +1 - chr14 49862549 49862849 chr14,49862549,49862849,-,7SLRNA,srpRNA,srpRNA,-20,300,1,49862529,49862849 +6 - chr14 49863922 49863952 chr14,49863922,49863952,+,(A)n,Simple_repeat,Simple_repeat,1,30,0,49863922,49863952 +6 + chr14 49864358 49864379 chr14,49864358,49864549,+,L2,LINE,L2,2323,2520,-899,49862036,49865448 +5 + chr14 49941936 49942063 chr14,49941935,49942063,-,AluSx1,SINE,Alu,-184,128,1,49941751,49942063 +5 - chr14 49942063 49942553 chr14,49942063,49942553,-,MLT1F,LTR,ERVL-MaLR,-57,491,3,49942006,49942555 +6 - chr14 49943023 49943376 chr14,49943023,49943376,+,THE1B,LTR,ERVL-MaLR,3,364,0,49943021,49943376 -6 + chr14 49943376 49943533 chr14,49943376,49943533,+,FRAM,SINE,Alu,1,149,-27,49943376,49943560 -6 + chr14 49943533 49943565 chr14,49943533,49943565,+,(AAC)n,Simple_repeat,Simple_repeat,1,32,0,49943533,49943565 -6 + chr14 49943565 49943579 chr14,49943565,49943579,+,FRAM,SINE,Alu,150,160,-16,49943416,49943595 -6 + chr14 49981712 49981980 chr14,49981685,49981980,-,AluSz,SINE,Alu,-3,309,1,49981682,49981980 +5 - chr14 49990990 49991021 chr14,49990684,49991021,+,MLT1J,LTR,ERVL-MaLR,1,310,-202,49990684,49991223 -5 + chr14 49991021 49991222 chr14,49991021,49991222,-,L1PB2,LINE,L1,-3,6148,5934,49991018,49997155 +6 - chr14 49991222 49991375 chr14,49991222,49991375,+,MLT1J,LTR,ERVL-MaLR,311,467,-45,49990912,49991420 -6 + chr14 49991578 49991928 chr14,49991578,49991928,-,MLT1K,LTR,ERVL-MaLR,-51,544,174,49991527,49992101 +6 - chr14 50000002 50000058 chr14,50000002,50000140,+,Charlie16a,DNA,hAT-Charlie,52,192,-150,49999951,50000290 -2 + chr14 50003868 50003993 chr14,50003868,50003993,-,MIRb,SINE,MIR,-91,177,43,50003777,50004035 +6 - chr14 50004085 50004232 chr14,50004085,50004232,+,LTR37B,LTR,ERV1,9,169,-299,50004077,50004531 -6 + chr14 50004256 50004393 chr14,50004256,50004393,+,AluJr,SINE,Alu,1,133,-179,50004256,50004572 -6 + chr14 50004437 50004737 chr14,50004437,50004737,+,AluJb,SINE,Alu,3,306,-6,50004435,50004743 -6 + chr14 50004770 50004964 chr14,50004770,50004964,+,LTR37B,LTR,ERV1,197,389,-79,50004574,50005043 -6 + chr14 50006621 50006902 chr14,50006621,50006902,-,AluSp,SINE,Alu,-15,298,3,50006606,50006904 +6 - chr14 50010934 50011076 chr14,50010912,50011076,-,MLT1J,LTR,ERVL-MaLR,-322,190,6,50010590,50011081 +5 - chr14 50037595 50037875 chr14,50037571,50037875,-,AluSq4,SINE,Alu,-7,304,1,50037564,50037875 +5 - chr14 50038892 50039004 chr14,50038892,50039004,+,MER63B,DNA,hAT-Blackjack,313,436,0,50038580,50039004 -6 + chr14 50039681 50039728 chr14,50039574,50039728,-,MER5A,DNA,hAT-Charlie,-40,149,1,50039534,50039728 +4 - chr14 50042275 50042446 chr14,50042091,50042540,+,MLT1J2,LTR,ERVL-MaLR,1,448,0,50042091,50042540 -3 + chr14 50047467 50047589 chr14,50047179,50047651,-,L2a,LINE,L2,-311,3115,2601,50046868,50050251 +3 - chr14 50089121 50089195 chr14,50088908,50089235,+,MLT1A0,LTR,ERVL-MaLR,1,312,-53,50088908,50089288 -1 + chr14 50326758 50326773 chr14,50326758,50327059,+,AluJr,SINE,Alu,1,290,-22,50326758,50327081 -2 + chr14 50327712 50327750 chr14,50327459,50327750,-,AluSg7,SINE,Alu,-6,303,1,50327453,50327750 +4 - chr14 50397875 50397931 chr14,50397841,50397931,-,L1MD3,LINE,L1,-2015,5980,5891,50395826,50403821 -2 - chr14 50397958 50398001 chr14,50397958,50398140,+,MLT1F2,LTR,ERVL-MaLR,363,560,0,50397596,50398140 +4 + chr14 50398313 50398345 chr14,50398278,50398448,-,FRAM,SINE,Alu,-1,175,10,50398277,50398457 -5 - chr14 50848122 50848149 chr14,50847675,50848490,-,MER21C,LTR,ERVL,-8,930,37,50847667,50848526 -1 - chr14 50912362 50912403 chr14,50912362,50912640,-,AluSx,SINE,Alu,-16,296,2,50912346,50912641 -4 - chr14 50956281 50957278 chr14,50956281,50957278,-,SVA_B,Retroposon,SVA,-339,1044,2,50955942,50957279 +6 - chr14 50957282 50957325 chr14,50957282,50957325,+,(GGAGAG)n,Simple_repeat,Simple_repeat,1,43,0,50957282,50957325 -6 + chr14 50957402 50957764 chr14,50957402,50957764,-,L1ME3A,LINE,L1,-12,6161,5781,50957390,50963544 +6 - chr14 50957764 50958012 chr14,50957764,50958012,-,AluSc8,SINE,Alu,-21,290,37,50957743,50958048 +6 - chr14 50958012 50958110 chr14,50958012,50958110,-,L1ME3A,LINE,L1,-393,5780,5687,50957619,50963796 +6 - chr14 50958110 50958405 chr14,50958110,50958405,-,AluSz6,SINE,Alu,-16,296,1,50958094,50958405 +6 - chr14 50958405 50958457 chr14,50958405,50958457,-,L1ME3A,LINE,L1,-487,5686,5640,50957918,50964096 +6 - chr14 50958635 50958665 chr14,50958635,50958665,+,(TTTA)n,Simple_repeat,Simple_repeat,1,30,0,50958635,50958665 -6 + chr14 50959239 50959334 chr14,50959239,50959334,-,L1ME4a,LINE,L1,-2,6122,6017,50959237,50965350 +6 - chr14 50959586 50960098 chr14,50959586,50960098,+,MER68B,LTR,ERVL,8,559,-4,50959579,50960102 -6 + chr14 50960337 50960615 chr14,50960337,50960652,+,AluSx4,SINE,Alu,1,310,0,50960337,50960652 -2 + chr14 51088957 51088995 chr14,51088930,51088995,-,MLT1K,LTR,ERVL-MaLR,-6,589,524,51088924,51089518 -1 - chr14 51089001 51089106 chr14,51089001,51089106,+,MLT1I,LTR,ERVL-MaLR,298,410,-1,51088704,51089107 +6 + chr14 51089987 51090033 chr14,51089962,51090095,-,MIR3,SINE,MIR,-54,154,15,51089908,51090109 -3 - chr14 51090624 51090896 chr14,51090604,51090896,-,AluSz,SINE,Alu,-18,294,1,51090586,51090896 -2 - chr14 51091129 51091167 chr14,51091129,51091167,+,(ATT)n,Simple_repeat,Simple_repeat,1,38,0,51091129,51091167 +6 + chr14 51304416 51304727 chr14,51304387,51304727,+,THE1B,LTR,ERVL-MaLR,1,364,0,51304387,51304727 -5 + chr14 51304727 51304840 chr14,51304727,51304870,+,AluJo,SINE,Alu,156,305,-7,51304572,51304877 -2 + chr14 51342356 51342897 chr14,51342356,51342897,+,MLT1E1A,LTR,ERVL-MaLR,5,680,0,51342352,51342897 +6 + chr14 51342928 51342967 chr14,51342928,51343134,+,MIR,SINE,MIR,49,261,-1,51342880,51343135 +5 + chr14 51348507 51348547 chr14,51348481,51348547,-,AluJo,SINE,Alu,-12,300,234,51348469,51348780 -2 - chr14 51352582 51352722 chr14,51352416,51352739,+,AluSx1,SINE,Alu,1,298,-14,51352416,51352753 -3 + chr14 51361687 51361793 chr14,51361655,51361793,+,MIR,SINE,MIR,47,192,-70,51361609,51361863 -4 + chr14 51361820 51361988 chr14,51361820,51361988,-,MER5B,DNA,hAT-Charlie,0,178,9,51361820,51361996 +6 - chr14 51362048 51362111 chr14,51362048,51362111,+,(TCT)n,Simple_repeat,Simple_repeat,1,65,0,51362048,51362111 -6 + chr14 51365363 51365459 chr14,51365187,51365459,+,MLT1J2,LTR,ERVL-MaLR,56,333,-115,51365132,51365574 +2 + chr14 51393460 51393478 chr14,51393313,51393478,-,MIR,SINE,MIR,-1,261,76,51393312,51393553 +4 - chr14 51454512 51454639 chr14,51454495,51454639,+,MIR,SINE,MIR,36,186,-22,51454460,51454661 -5 + chr14 51584166 51584205 chr14,51584037,51584205,-,MIR3,SINE,MIR,-60,202,37,51583977,51584241 +4 - chr14 51599913 51599952 chr14,51599913,51599958,+,MIR3,SINE,MIR,23,68,-140,51599891,51600098 -1 + chr14 51637465 51637501 chr14,51637465,51637501,+,(CA)n,Simple_repeat,Simple_repeat,1,36,0,51637465,51637501 -6 + chr14 51649759 51650034 chr14,51649759,51650034,-,AluJr,SINE,Alu,-13,299,31,51649746,51650064 +6 - chr14 51650391 51650687 chr14,51650391,51650687,-,AluYa5,SINE,Alu,-8,303,8,51650383,51650694 +6 - chr14 51650778 51650843 chr14,51650778,51650843,+,Tigger19b,DNA,TcMar-Tigger,163,227,-323,51650616,51651166 -6 + chr14 51750560 51750774 chr14,51748586,51751343,+,HERVE-int,LTR,ERV1,1108,3874,-3939,51747479,51755282 +1 + chr14 51761107 51761262 chr14,51760100,51763024,+,SATR2,Satellite,Satellite,1,2820,0,51760100,51763024 +3 + chr14 51765586 51765882 chr14,51765586,51765882,-,AluSx3,SINE,Alu,-15,296,2,51765571,51765883 -6 - chr14 51766284 51766489 chr14,51766284,51766489,+,MIR,SINE,MIR,41,252,-10,51766244,51766499 +6 + chr14 51766508 51766546 chr14,51766508,51766546,+,(TCA)n,Simple_repeat,Simple_repeat,1,38,0,51766508,51766546 +6 + chr14 51789713 51789779 chr14,51789698,51789779,+,CR1-3_Croc,LINE,CR1,736,816,-2789,51788963,51792568 +2 + chr14 51808621 51808680 chr14,51808452,51808680,+,MLT1H,LTR,ERVL-MaLR,14,307,-242,51808439,51808922 +2 + chr14 51809124 51809206 chr14,51809124,51809206,+,MLT1H,LTR,ERVL-MaLR,390,549,0,51808735,51809206 +6 + chr14 51809717 51809892 chr14,51809717,51809892,+,MIRb,SINE,MIR,26,202,-66,51809692,51809958 +6 + chr14 51809933 51810225 chr14,51809933,51810225,-,MLT1J1,LTR,ERVL-MaLR,-60,384,70,51809873,51810294 -6 - chr14 51812208 51812270 chr14,51811959,51812270,-,MER2,DNA,TcMar-Tigger,-1,344,1,51811958,51812270 -2 - chr14 51818054 51818282 chr14,51818033,51818501,-,MLT1L,LTR,ERVL-MaLR,-75,520,13,51817958,51818513 -3 - chr14 51819937 51819972 chr14,51819937,51819972,+,(TC)n,Simple_repeat,Simple_repeat,1,35,0,51819937,51819972 +6 + chr14 51824985 51825281 chr14,51824960,51825281,-,AluJb,SINE,Alu,-13,299,1,51824947,51825281 -2 - chr14 51825312 51825407 chr14,51825312,51825407,+,L1PA16,LINE,L1,6060,6157,-9,51819253,51825416 +6 + chr14 51967152 51967192 chr14,51967152,51967192,+,(CCTTCT)n,Simple_repeat,Simple_repeat,1,42,0,51967152,51967192 -6 + chr14 52111122 52111215 chr14,52110793,52111215,-,MER21B,LTR,ERVL,-8,930,402,52110785,52111616 +5 - chr14 52111213 52111321 chr14,52111213,52111338,-,MER21B,LTR,ERVL,-728,140,16,52110485,52111353 +2 - chr14 52123673 52123687 chr14,52123489,52123687,-,L1MC5a,LINE,L1,-1349,1428,1235,52122140,52124921 +4 - chr14 52129581 52129625 chr14,52129442,52129756,+,AluJb,SINE,Alu,1,312,0,52129442,52129756 -1 + chr14 52641319 52641374 chr14,52641319,52641634,+,AluY,SINE,Alu,1,302,-9,52641319,52641643 +5 + chr14 52641522 52641566 chr14,52641319,52641634,+,AluY,SINE,Alu,1,302,-9,52641319,52641643 +5 + chr14 52775370 52775502 chr14,52775370,52775502,-,MER104,DNA,TcMar-Tc2,0,181,38,52775370,52775539 -6 - chr14 52775610 52775882 chr14,52775610,52775882,+,AluJo,SINE,Alu,1,282,-30,52775610,52775912 +6 + chr14 52775895 52775946 chr14,52775895,52776188,+,AluJb,SINE,Alu,1,301,-11,52775895,52776199 +4 + chr14 52776556 52776600 chr14,52776556,52776854,-,AluSx3,SINE,Alu,-12,299,1,52776544,52776854 -4 - chr14 52792875 52792960 chr14,52792822,52792988,+,AluJr,SINE,Alu,117,309,-3,52792706,52792991 -5 + chr14 52819925 52819991 chr14,52819865,52819991,-,AluY,SINE,Alu,-185,126,1,52819680,52819991 +4 - chr14 53036782 53037073 chr14,53036782,53037985,-,L1PA16,LINE,L1,-9,6157,4897,53036773,53042881 -4 - chr14 53038205 53038251 chr14,53037983,53038941,+,L1PA16,LINE,L1,3925,4895,-1251,53034059,53040192 +5 + chr14 53153354 53153366 chr14,53153331,53153366,+,(CCCCG)n,Simple_repeat,Simple_repeat,1,36,0,53153331,53153366 +1 + chr14 53157320 53157473 chr14,53157320,53157473,-,MamRep605,LTR?,LTR?,-237,612,454,53157083,53157926 -6 - chr14 53157513 53157528 chr14,53157513,53157556,-,L2a,LINE,L2,0,3426,3386,53157513,53160941 -5 - chr14 53169054 53169275 chr14,53168732,53169339,-,MER50,LTR,ERV1,-122,612,2,53168610,53169340 -1 - chr14 53217712 53218049 chr14,53216382,53218049,-,LTR12C,LTR,ERV1,0,1579,3,53216382,53218051 -1 - chr14 53318040 53318138 chr14,53318040,53324215,+,L1PA4,LINE,L1,1,6154,-1,53318040,53324216 +4 + chr14 53326601 53326711 chr14,53326555,53326820,+,MLT1G1-int,LTR,ERVL-MaLR,1227,1489,0,53325329,53326820 +5 + chr14 53369421 53369449 chr14,53369421,53369449,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,53369421,53369449 +6 + chr14 53525811 53525993 chr14,53525617,53525993,-,LTR16E2,LTR,ERVL,-16,635,215,53525601,53526207 -2 - chr14 53590943 53591107 chr14,53590869,53591107,-,MIRb,SINE,MIR,-12,256,21,53590857,53591127 -1 - chr14 53599832 53599903 chr14,53599777,53599903,-,L3,LINE,CR1,-3049,1050,926,53596728,53600828 +5 - chr14 53793285 53793396 chr14,53793285,53793424,+,MIR,SINE,MIR,2,160,-102,53793284,53793526 -2 + chr14 53849855 53849970 chr14,53849855,53849986,-,L2b,LINE,L2,0,3387,3228,53849855,53853213 +2 - chr14 53850695 53850716 chr14,53850670,53850716,+,MER5B,DNA,hAT-Charlie,1,47,-131,53850670,53850847 -4 + chr14 53850721 53850820 chr14,53850721,53850820,-,MER5B,DNA,hAT-Charlie,-77,101,2,53850644,53850821 +6 - chr14 53850838 53850882 chr14,53850838,53851253,-,L2b,LINE,L2,-905,2514,2068,53849933,53853320 +1 - chr14 54470709 54470897 chr14,54470620,54471089,-,Ricksha_c,DNA,MULE-MuDR,-1143,905,463,54469477,54471551 -1 - chr14 54471023 54471089 chr14,54470620,54471089,-,Ricksha_c,DNA,MULE-MuDR,-1143,905,463,54469477,54471551 -1 - chr14 55196966 55197106 chr14,55196966,55197106,-,AluSx3,SINE,Alu,-36,275,136,55196930,55197241 +6 - chr14 55262767 55262857 chr14,55262696,55262857,-,MLT1L,LTR,ERVL-MaLR,-315,295,150,55262381,55263006 +5 - chr14 55262857 55263075 chr14,55262857,55263075,-,MER20,DNA,hAT-Charlie,0,219,2,55262857,55263076 +5 - chr14 55263075 55263156 chr14,55263075,55263221,-,MLT1L,LTR,ERVL-MaLR,-461,149,2,55262614,55263222 +2 - chr14 55499415 55499493 chr14,55499415,55499963,-,MER41A,LTR,ERV1,0,554,1,55499415,55499963 +2 - chr14 55557972 55558091 chr14,55557787,55558091,-,AluSz,SINE,Alu,-12,300,1,55557775,55558091 +5 - chr14 55558199 55558244 chr14,55558199,55558244,+,OldhAT1,DNA,hAT-Ac,713,759,-2089,55557487,55560333 -6 + chr14 55558798 55558917 chr14,55558798,55558917,-,MIR3,SINE,MIR,-3,205,83,55558795,55558999 +6 - chr14 55559123 55559234 chr14,55559123,55559234,+,LTR79,LTR,ERVL,391,501,-26,55558733,55559260 -6 + chr14 55559496 55559774 chr14,55559496,55559786,+,AluSz,SINE,Alu,1,291,-21,55559496,55559807 -2 + chr14 55576207 55576400 chr14,55576207,55576400,+,MIRb,SINE,MIR,3,234,-34,55576205,55576434 -6 + chr14 55576650 55577160 chr14,55576650,55577160,-,MLT1H1,LTR,ERVL-MaLR,0,555,7,55576650,55577166 +6 - chr14 55748208 55748282 chr14,55747974,55748429,+,MLT1L,LTR,ERVL-MaLR,94,602,-8,55747881,55748437 +1 + chr14 55771631 55771705 chr14,55771626,55771736,+,L2a,LINE,L2,3311,3425,-1,55768316,55771737 +3 + chr14 55781135 55781150 chr14,55781022,55781150,-,MIRb,SINE,MIR,-27,241,110,55780995,55781259 +5 - chr14 55781150 55781352 chr14,55781150,55781374,-,L4_A_Mam,LINE,RTE-X,-4,4986,4748,55781146,55786121 +2 - chr14 55782217 55782381 chr14,55782217,55782381,+,MIRc,SINE,MIR,91,256,-12,55782127,55782393 -6 + chr14 55782400 55782439 chr14,55782400,55782439,+,(T)n,Simple_repeat,Simple_repeat,1,39,0,55782400,55782439 -5 + chr14 55782439 55782456 chr14,55782439,55782456,+,(TTCTG)n,Simple_repeat,Simple_repeat,15,63,0,55782425,55782456 -6 + chr14 55782500 55782657 chr14,55782500,55782657,-,MER5B,DNA,hAT-Charlie,-6,172,1,55782494,55782657 +6 - chr14 55787927 55788091 chr14,55787800,55788091,-,AluY,SINE,Alu,-9,302,21,55787791,55788111 +5 - chr14 55792725 55792891 chr14,55792452,55792891,+,L1ME4a,LINE,L1,5476,5936,-188,55786977,55793079 -5 + chr14 55793134 55793456 chr14,55793134,55793457,-,LTR104_Mam,LTR,Gypsy,-396,1113,798,55792738,55794254 +1 - chr14 55794284 55794345 chr14,55794258,55794795,-,MER68,LTR,ERVL,0,563,1,55794258,55794795 +3 - chr14 55796603 55796688 chr14,55796522,55796882,-,THE1B,LTR,ERVL-MaLR,0,364,1,55796522,55796882 +1 - chr14 55896547 55896589 chr14,55896320,55896673,+,THE1C,LTR,ERVL-MaLR,2,375,0,55896319,55896673 +1 + chr14 55916046 55916275 chr14,55916046,55916275,+,L2b,LINE,L2,3149,3375,0,55912898,55916275 +6 + chr14 55943659 55943812 chr14,55943659,55943901,-,L2,LINE,L2,-829,2590,2346,55942830,55946246 -4 - chr14 55961981 55962047 chr14,55961944,55962047,-,L2c,LINE,L2,-15,3372,3271,55961929,55965317 -2 - chr14 55962825 55962970 chr14,55962619,55963016,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,55962619,55963016 +5 + chr14 56117386 56117423 chr14,56117386,56117423,+,MIR,SINE,MIR,218,254,-8,56117169,56117431 -6 + chr14 56303610 56303629 chr14,56303610,56303629,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,56303610,56303629 -6 + chr14 56306145 56306294 chr14,56306145,56306294,+,MIR3,SINE,MIR,1,160,-48,56306145,56306342 +6 + chr14 56308834 56308858 chr14,56308834,56308858,+,(AC)n,Simple_repeat,Simple_repeat,1,24,0,56308834,56308858 -6 + chr14 56326180 56326208 chr14,56326050,56326248,-,MIR,SINE,MIR,0,262,46,56326050,56326293 -5 - chr14 56328183 56328361 chr14,56327745,56328497,-,MER45B,DNA,hAT-Tip100,-259,781,1,56327486,56328497 -3 - chr14 56344974 56345001 chr14,56344767,56345152,+,THE1D,LTR,ERVL-MaLR,1,381,0,56344767,56345152 +5 + chr14 56549271 56549345 chr14,56549163,56549345,-,MamSINE1,SINE,tRNA-RTE,-8,282,94,56549155,56549438 -2 - chr14 56550249 56550836 chr14,56550249,56550836,+,MER39B,LTR,ERV1,1,653,0,56550249,56550836 +6 + chr14 56551267 56551309 chr14,56551267,56551468,-,Zaphod3,DNA,hAT-Tip100,-2410,213,3,56548857,56551470 -5 - chr14 56638219 56638318 chr14,56638219,56638409,+,MIR3,SINE,MIR,24,205,-3,56638196,56638412 -2 + chr14 56723219 56723308 chr14,56723219,56723358,+,FLAM_C,SINE,Alu,1,133,-10,56723219,56723368 -2 + chr14 56725890 56725987 chr14,56725733,56726044,+,AluSp,SINE,Alu,1,312,-1,56725733,56726045 -3 + chr14 56765172 56765284 chr14,56765172,56765284,+,L1MEh,LINE,L1,9,118,-2117,56765164,56767401 +6 + chr14 56765549 56765757 chr14,56765549,56766320,+,L1M5,LINE,L1,4571,5304,-842,56760979,56767162 +5 + chr14 56813216 56813262 chr14,56813216,56813262,+,GA-rich,Low_complexity,Low_complexity,1,47,0,56813216,56813262 +1 + chr14 56880818 56880932 chr14,56880631,56880932,-,UCON2,DNA?,DNA?,-218,367,20,56880413,56880951 +5 - chr14 56893543 56893710 chr14,56893543,56893742,+,MIRb,SINE,MIR,16,212,-56,56893528,56893798 -1 + chr14 56897540 56897639 chr14,56897509,56897639,-,AluSx,SINE,Alu,-27,285,156,56897482,56897794 -2 - chr14 56928894 56929262 chr14,56928894,56929262,+,L2c,LINE,L2,1284,1664,-1755,56927611,56931017 +5 + chr14 56929285 56929582 chr14,56929285,56929582,-,AluSx1,SINE,Alu,-18,294,2,56929267,56929583 -6 - chr14 56929748 56929858 chr14,56929748,56929858,-,L1ME3G,LINE,L1,-58,866,754,56929690,56930611 -6 - chr14 56930009 56930099 chr14,56930009,56930099,+,L2a,LINE,L2,3309,3403,-23,56926701,56930122 +6 + chr14 56930103 56930154 chr14,56930103,56930154,+,(CTTC)n,Simple_repeat,Simple_repeat,1,51,0,56930103,56930154 +6 + chr14 56930154 56930251 chr14,56930154,56930251,+,(TCTC)n,Simple_repeat,Simple_repeat,1,100,0,56930154,56930251 +6 + chr14 56930251 56930562 chr14,56930251,56930562,-,AluJb,SINE,Alu,-2,310,6,56930249,56930567 -6 - chr14 56930599 56930833 chr14,56930599,56930847,-,L1ME3Cz,LINE,L1,-429,568,308,56930170,56931154 -5 - chr14 57112210 57112660 chr14,57112210,57118214,+,L1PA2,LINE,L1,124,6152,-3,57112087,57118217 -1 + chr14 57141994 57142102 chr14,57141670,57142623,-,HERVL-int,LTR,ERVL,-818,4836,3840,57140852,57146462 -3 - chr14 57152044 57152177 chr14,57151991,57152428,+,Tigger2,DNA,TcMar-Tigger,2334,2714,-4,57149658,57152432 +5 + chr14 57356030 57356052 chr14,57356030,57356052,+,(ATGT)n,Simple_repeat,Simple_repeat,1,22,0,57356030,57356052 +6 + chr14 57356055 57356209 chr14,57356055,57356209,-,L1ME4a,LINE,L1,-6,6118,5964,57356049,57362172 -6 - chr14 57356213 57356512 chr14,57356213,57356512,-,L1ME3G,LINE,L1,-349,575,258,57355864,57356769 -6 - chr14 57357118 57357247 chr14,57357118,57357247,-,MIRb,SINE,MIR,0,268,135,57357118,57357381 -6 - chr14 57359112 57359275 chr14,57359112,57359275,+,GA-rich,Low_complexity,Low_complexity,1,167,0,57359112,57359275 +6 + chr14 57359345 57359378 chr14,57359345,57359378,+,(TATACA)n,Simple_repeat,Simple_repeat,1,35,0,57359345,57359378 +6 + chr14 57578840 57579005 chr14,57578840,57579296,-,MLT1D,LTR,ERVL-MaLR,0,505,1,57578840,57579296 -4 - chr14 57993875 57994215 chr14,57993875,57994215,+,MER2,DNA,TcMar-Tigger,3,345,0,57993873,57994215 -6 + chr14 57994491 57994525 chr14,57994491,57994612,+,MER124,DNA?,DNA?,1,122,-275,57994491,57994887 -1 + chr14 58264738 58264815 chr14,58264738,58264815,-,MIR3,SINE,MIR,-23,185,111,58264715,58264925 -6 - chr14 58264988 58265116 chr14,58264988,58265278,+,AluJo,SINE,Alu,11,298,-14,58264978,58265292 +4 + chr14 58265438 58265630 chr14,58265438,58265630,+,MER58A,DNA,hAT-Charlie,30,224,0,58265409,58265630 -6 + chr14 58266998 58267301 chr14,58266998,58267301,-,AluSx,SINE,Alu,-11,301,1,58266987,58267301 +5 - chr14 58269561 58269681 chr14,58269429,58269732,-,AluSg,SINE,Alu,-9,301,1,58269420,58269732 -5 - chr14 58272963 58273171 chr14,58272963,58273171,-,AluJr,SINE,Alu,-106,206,1,58272857,58273171 +6 - chr14 58273523 58273815 chr14,58273523,58273815,-,AluSx4,SINE,Alu,-18,292,1,58273505,58273815 +5 - chr14 58274012 58274036 chr14,58274012,58274036,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,58274012,58274036 -5 + chr14 58286640 58286824 chr14,58286568,58286824,-,AluSp,SINE,Alu,-19,294,32,58286549,58286855 +4 - chr14 58288033 58288415 chr14,58287249,58288415,-,HSMAR2,DNA,TcMar-Mariner,-1,1301,63,58287248,58288477 -1 - chr14 58288649 58288981 chr14,58288649,58288981,+,L2,LINE,L2,2418,2772,-647,58286232,58289628 +6 + chr14 58288718 58288813 chr14,58288649,58288981,+,L2,LINE,L2,2418,2772,-647,58286232,58289628 -3 + chr14 58289127 58289158 chr14,58289127,58289438,+,L1ME4c,LINE,L1,16,364,-466,58289112,58289904 +5 + chr14 58293314 58293536 chr14,58293242,58293536,-,AluSp,SINE,Alu,-16,297,1,58293226,58293536 +5 - chr14 58293710 58293765 chr14,58293710,58293765,+,(ATACAT)n,Simple_repeat,Simple_repeat,1,56,0,58293710,58293765 -6 + chr14 58293784 58294041 chr14,58293784,58294041,-,AluJb,SINE,Alu,-45,267,1,58293739,58294041 +6 - chr14 58294054 58294108 chr14,58294054,58294108,+,L1M5,LINE,L1,5633,5688,-436,58288422,58294544 -6 + chr14 58294143 58295084 chr14,58294143,58295084,-,HSMAR1,DNA,TcMar-Mariner,0,1287,332,58294143,58295415 +6 - chr14 58295084 58295377 chr14,58295084,58295377,+,AluSg,SINE,Alu,2,300,-10,58295083,58295387 -6 + chr14 58295377 58295541 chr14,58295377,58295541,-,HSMAR1,DNA,TcMar-Mariner,-956,331,166,58294421,58295706 +6 - chr14 58295541 58295811 chr14,58295541,58295839,+,AluSc8,SINE,Alu,1,300,-11,58295541,58295850 -2 + chr14 58398890 58398930 chr14,58398890,58399185,-,AluJo,SINE,Alu,-17,295,1,58398873,58399185 -4 - chr14 58890324 58890487 chr14,58890096,58890487,+,MamRTE1,LINE,RTE-BovB,3319,3714,-98,58886778,58890585 +2 + chr14 58894189 58894331 chr14,58894189,58894674,+,MLT1D,LTR,ERVL-MaLR,7,505,0,58894183,58894674 +5 + chr14 59969116 59969177 chr14,59969107,59969177,+,(TTTTGATA)n,Simple_repeat,Simple_repeat,1,78,0,59969107,59969177 -5 + chr14 59969183 59969374 chr14,59969183,59969374,+,L2c,LINE,L2,2062,2275,-1144,59967122,59970518 -6 + chr14 59973463 59973513 chr14,59973458,59973759,-,MER2,DNA,TcMar-Tigger,-3,342,1,59973455,59973759 +3 - chr14 60030296 60030378 chr14,60029706,60030599,+,L4_C_Mam,LINE,RTE-X,2198,3169,-1969,60027509,60032568 -3 + chr14 60240125 60240438 chr14,60240125,60240438,-,L1PA11,LINE,L1,0,6174,5849,60240125,60246286 +5 - chr14 60240438 60240508 chr14,60240438,60240508,+,L1P3,LINE,L1,5262,5341,-805,60235177,60241313 -6 + chr14 60240532 60240652 chr14,60240532,60240652,-,MIRb,SINE,MIR,-34,234,99,60240498,60240750 +6 - chr14 60241103 60241316 chr14,60241103,60241316,+,LTR103b_Mam,LTR,ERV1?,285,523,-25,60240819,60241341 -6 + chr14 60241407 60241528 chr14,60241407,60241528,+,MIR,SINE,MIR,117,242,-20,60241291,60241548 -6 + chr14 60241950 60242106 chr14,60241950,60242106,-,MLT1L,LTR,ERVL-MaLR,-11,599,437,60241939,60242542 +6 - chr14 60242306 60242503 chr14,60242306,60242503,-,Charlie17a,DNA,hAT-Charlie,0,217,14,60242306,60242516 +6 - chr14 60242672 60242821 chr14,60242672,60242821,-,MIRb,SINE,MIR,-64,204,50,60242608,60242870 +6 - chr14 60242850 60242870 chr14,60242850,60243062,-,MER63C,DNA,hAT-Blackjack,-252,678,414,60242598,60243475 +2 - chr14 60245168 60245336 chr14,60245118,60245452,+,L2a,LINE,L2,3016,3394,-32,60242103,60245484 -1 + chr14 60323236 60323276 chr14,60323001,60323369,-,MLT1K,LTR,ERVL-MaLR,-12,583,208,60322989,60323576 -1 - chr14 60554494 60554682 chr14,60554494,60554682,+,L1MB4,LINE,L1,5546,5764,-548,60548949,60555230 +6 + chr14 60554682 60554916 chr14,60554682,60555501,+,L1MA2,LINE,L1,5480,6304,0,60549203,60555501 +5 + chr14 61303021 61303327 chr14,61303012,61303327,-,AluJo,SINE,Alu,-12,300,1,61303000,61303327 +5 - chr14 61303327 61303871 chr14,61303327,61303871,-,L1MEf,LINE,L1,-3643,2676,2106,61299684,61305976 +6 - chr14 61303871 61304075 chr14,61303871,61304075,+,MER3,DNA,hAT-Charlie,1,208,-1,61303871,61304076 -6 + chr14 61304075 61304542 chr14,61304075,61304542,-,L1MEf,LINE,L1,-4297,2118,1664,61299778,61306205 +6 - chr14 61304542 61304837 chr14,61304542,61304837,+,AluJo,SINE,Alu,1,296,-16,61304542,61304853 -6 + chr14 61304837 61305190 chr14,61304837,61305190,-,L1MEf,LINE,L1,-4752,1448,1106,61300085,61306295 +6 - chr14 61305190 61305463 chr14,61305190,61305463,-,AluJr,SINE,Alu,-20,292,1,61305170,61305463 +6 - chr14 61305463 61306685 chr14,61305463,61306685,-,L1MEf,LINE,L1,-5095,1320,24,61300368,61306708 +6 - chr14 61306857 61306895 chr14,61306857,61306895,+,(TAATTAT)n,Simple_repeat,Simple_repeat,1,39,0,61306857,61306895 -6 + chr14 61307116 61307235 chr14,61307116,61307244,+,AluJr,SINE,Alu,1,133,-179,61307116,61307423 -2 + chr14 61545167 61545287 chr14,61545167,61545469,+,L2c,LINE,L2,3029,3337,-50,61542139,61545519 -1 + chr14 61556335 61556535 chr14,61556335,61556535,+,CR1-3_Croc,LINE,CR1,1791,1996,-1609,61554545,61558144 -6 + chr14 61560743 61560776 chr14,61560600,61560776,+,MIRc,SINE,MIR,10,206,-62,61560591,61560838 -4 + chr14 61560779 61561074 chr14,61560779,61561074,+,AluJr,SINE,Alu,1,296,-16,61560779,61561090 -6 + chr14 61562882 61562921 chr14,61562882,61562921,+,(TC)n,Simple_repeat,Simple_repeat,1,40,0,61562882,61562921 -6 + chr14 61563652 61563803 chr14,61563652,61563803,+,MER5A,DNA,hAT-Charlie,37,189,0,61563616,61563803 -6 + chr14 61563989 61564079 chr14,61563989,61564079,+,MIRc,SINE,MIR,78,172,-36,61563912,61564115 -6 + chr14 61564388 61565030 chr14,61564388,61565030,-,MER76,LTR,ERVL,0,691,13,61564388,61565042 +6 - chr14 61570158 61570194 chr14,61570158,61570305,+,MER5A1,DNA,hAT-Charlie,2,162,-4,61570157,61570309 -1 + chr14 61647432 61647514 chr14,61647432,61647514,+,MIR3,SINE,MIR,20,100,-108,61647413,61647622 +6 + chr14 61647533 61647561 chr14,61647533,61647681,-,MIR,SINE,MIR,-69,193,35,61647464,61647715 -4 - chr14 61654252 61654392 chr14,61654252,61654392,-,MamSINE1,SINE,tRNA-RTE,-7,283,121,61654245,61654512 -6 - chr14 61656803 61656853 chr14,61656606,61656916,-,AluSx1,SINE,Alu,0,312,2,61656606,61656917 -3 - chr14 61657705 61658688 chr14,61657705,61658688,+,L1PA5,LINE,L1,5170,6153,-1,61652536,61658689 +6 + chr14 61715558 61715681 chr14,61715491,61715681,+,MIR,SINE,MIR,1,240,-22,61715491,61715703 -5 + chr14 61715717 61715828 chr14,61715717,61716020,+,AluJo,SINE,Alu,1,303,-9,61715717,61716029 -2 + chr14 61734147 61734176 chr14,61734147,61734176,+,(AGGAC)n,Simple_repeat,Simple_repeat,1,29,0,61734147,61734176 +6 + chr14 61801713 61801773 chr14,61800835,61801773,-,L1MEf,LINE,L1,-4382,2096,991,61796453,61802763 -1 - chr14 61801872 61802080 chr14,61801872,61802080,-,L1MEf,LINE,L1,-5513,950,728,61796359,61802807 -6 - chr14 61802324 61802460 chr14,61802324,61802460,-,L1MEf,LINE,L1,-5661,711,571,61796663,61803030 -6 - chr14 61803114 61803244 chr14,61803114,61803244,-,FLAM_A,SINE,Alu,-12,130,1,61803102,61803244 -6 - chr14 61803465 61803634 chr14,61803465,61803638,-,UCON40,Unknown,Unknown,-23,292,130,61803442,61803767 -5 - chr14 61812022 61812052 chr14,61812022,61812052,+,(CATT)n,Simple_repeat,Simple_repeat,1,30,0,61812022,61812052 +6 + chr14 61812067 61812179 chr14,61812067,61812179,-,L2a,LINE,L2,0,3426,3310,61812067,61815488 -6 - chr14 61897253 61897271 chr14,61896963,61897271,+,MER58B,DNA,hAT-Charlie,1,341,0,61896963,61897271 +2 + chr14 62104828 62104908 chr14,62104691,62104908,+,MIR,SINE,MIR,4,242,-20,62104688,62104928 -4 + chr14 62114601 62114664 chr14,62114598,62114664,+,MIR3,SINE,MIR,47,115,-93,62114552,62114757 -4 + chr14 62130710 62130817 chr14,62130710,62130817,-,L1PA8A,LINE,L1,-5,6126,6019,62130705,62136835 -6 - chr14 62130817 62130850 chr14,62130817,62130850,-,L1PA7,LINE,L1,-115,6039,6007,62130702,62136856 -6 - chr14 63123638 63123689 chr14,63123638,63123689,+,(TTGTG)n,Simple_repeat,Simple_repeat,1,53,0,63123638,63123689 -6 + chr14 63298758 63298780 chr14,63298758,63299052,+,AluSx,SINE,Alu,1,296,-16,63298758,63299068 -2 + chr14 63299323 63299463 chr14,63299162,63299463,-,AluSp,SINE,Alu,-11,302,2,63299151,63299464 +4 - chr14 64329482 64329632 chr14,64329482,64329632,+,AluJb,SINE,Alu,1,211,-91,64329482,64329723 -6 + chr14 64329665 64329708 chr14,64329665,64329708,+,(CATA)n,Simple_repeat,Simple_repeat,1,45,0,64329665,64329708 -6 + chr14 64329856 64330144 chr14,64329856,64330144,+,AluSq,SINE,Alu,1,310,-3,64329856,64330147 -6 + chr14 64330147 64330451 chr14,64330147,64330451,+,AluSp,SINE,Alu,1,305,-8,64330147,64330459 -6 + chr14 64330477 64330765 chr14,64330477,64330765,-,MLT2D,LTR,ERVL,-93,321,24,64330384,64330788 +6 - chr14 64330765 64330921 chr14,64330765,64330942,+,AluSx1,SINE,Alu,124,300,-12,64330642,64330954 -2 + chr14 64335835 64335973 chr14,64335797,64335973,-,AluSx1,SINE,Alu,-6,306,127,64335791,64336099 +5 - chr14 64335973 64336024 chr14,64335973,64336024,+,(TG)n,Simple_repeat,Simple_repeat,1,51,0,64335973,64336024 -6 + chr14 64336024 64336148 chr14,64336024,64336148,-,AluSx1,SINE,Alu,-186,126,3,64335838,64336150 +6 - chr14 64336179 64336334 chr14,64336179,64336334,-,L1M5,LINE,L1,-413,5711,5541,64335766,64341874 +6 - chr14 64336426 64336720 chr14,64336426,64336886,+,L2,LINE,L2,2036,2588,-831,64334391,64337717 -1 + chr14 64440383 64440569 chr14,64440383,64440569,+,MamRep4096,DNA,hAT-Tip100,159,353,-73,64440225,64440642 -6 + chr14 64440909 64441201 chr14,64440909,64441201,+,AluY,SINE,Alu,1,291,-20,64440909,64441221 -6 + chr14 64441529 64441820 chr14,64441529,64441820,+,AluY,SINE,Alu,6,299,-12,64441524,64441832 -6 + chr14 64559478 64559526 chr14,64559478,64559679,-,L2c,LINE,L2,-222,3165,2973,64559256,64562651 +2 - chr14 64596462 64596536 chr14,64596306,64596716,-,L1ME4a,LINE,L1,-423,5701,5283,64595883,64601998 +1 - chr14 65003411 65003767 chr14,65003411,65003932,-,MER34C_,LTR,ERV1,0,585,37,65003411,65003968 +1 - chr14 65082034 65082173 chr14,65082016,65082173,-,MIR,SINE,MIR,-7,255,46,65082009,65082218 -1 - chr14 65090531 65090647 chr14,65090507,65090802,-,AluJb,SINE,Alu,-10,302,1,65090497,65090802 -3 - chr14 65091846 65091865 chr14,65091496,65091955,+,L2a,LINE,L2,2926,3426,0,65088571,65091955 +5 + chr14 65212893 65213685 chr14,65212851,65213685,-,MER4D1,LTR,ERV1,-78,822,9,65212773,65213693 +5 - chr14 65213687 65213926 chr14,65213687,65213942,+,AluSq2,SINE,Alu,42,296,-17,65213646,65213959 -2 + chr14 65218614 65218695 chr14,65218614,65218994,+,MamRep4096,DNA,hAT-Tip100,1,397,-29,65218614,65219023 -2 + chr14 65246849 65246963 chr14,65246691,65246986,+,AluSc,SINE,Alu,1,293,-16,65246691,65247002 -3 + chr14 65247638 65247723 chr14,65247568,65247922,-,MLT2B1,LTR,ERVL,-47,473,71,65247521,65247992 +3 - chr14 65253701 65253815 chr14,65253684,65253815,+,MLT1L,LTR,ERVL-MaLR,157,289,-321,65253528,65254136 -5 + chr14 65253850 65253906 chr14,65253850,65254082,+,MLT1L,LTR,ERVL-MaLR,360,603,-7,65253491,65254089 -2 + chr14 65269447 65269512 chr14,65269447,65269539,+,L1PA16,LINE,L1,6072,6166,0,65263376,65269539 -2 + chr14 65318557 65318655 chr14,65318557,65318655,+,MIR3,SINE,MIR,15,111,-97,65318543,65318752 -6 + chr14 65318645 65318790 chr14,65318645,65318866,-,L2c,LINE,L2,-2,3385,3144,65318643,65322009 +1 - chr14 65318767 65318790 chr14,65318767,65318906,+,MIRb,SINE,MIR,9,153,-115,65318759,65319021 -1 + chr14 65411220 65411332 chr14,65411220,65411332,+,MIR1_Amn,SINE,MIR,62,181,-49,65411159,65411381 -6 + chr14 65411399 65411527 chr14,65411399,65411527,+,L2a,LINE,L2,3294,3426,0,65408106,65411527 -6 + chr14 65957297 65957361 chr14,65956879,65957361,-,LTR2B,LTR,ERV1,0,483,2,65956879,65957362 +5 - chr14 65957361 65957551 chr14,65957361,65957551,-,MER2,DNA,TcMar-Tigger,-93,252,1,65957268,65957551 +6 - chr14 65957553 65957677 chr14,65957553,65957677,+,L2c,LINE,L2,2389,2514,-905,65955165,65958582 -6 + chr14 65957819 65957855 chr14,65957819,65957855,+,(CTCTTC)n,Simple_repeat,Simple_repeat,1,36,0,65957819,65957855 -2 + chr14 65986967 65987343 chr14,65986916,65987343,-,MLT1C,LTR,ERVL-MaLR,0,467,4,65986916,65987346 +5 - chr14 65988570 65988650 chr14,65988542,65988675,+,MIR3,SINE,MIR,8,158,-50,65988535,65988725 -3 + chr14 65989681 65989743 chr14,65989681,65989766,+,AluSx3,SINE,Alu,217,301,-10,65989465,65989776 -2 + chr14 66004455 66004523 chr14,66004395,66004557,+,MSTB,LTR,ERVL-MaLR,200,362,-66,66004196,66004623 -1 + chr14 66111581 66111769 chr14,66111512,66111769,-,MLT1K,LTR,ERVL-MaLR,-317,278,20,66111195,66111788 -1 - chr14 66117908 66117925 chr14,66117284,66117925,+,L2a,LINE,L2,1570,2231,-1188,66115715,66119113 +2 + chr14 66117936 66118054 chr14,66117936,66118518,+,L1ME3,LINE,L1,5746,6226,-218,66112191,66118736 +4 + chr14 66122670 66122878 chr14,66122670,66123009,-,Tigger3a,DNA,TcMar-Tigger,0,348,1,66122670,66123009 -4 - chr14 66212810 66213105 chr14,66212756,66213461,-,LTR8A,LTR,ERV1,0,727,16,66212756,66213476 +5 - chr14 66230333 66230875 chr14,66230168,66230875,-,HAL1,LINE,L1,-373,2134,1335,66229795,66232209 +5 - chr14 66230875 66230895 chr14,66230875,66231091,-,MER58A,DNA,hAT-Charlie,0,224,1,66230875,66231091 +2 - chr14 66249206 66249233 chr14,66249048,66249233,+,MIRb,SINE,MIR,3,195,-73,66249046,66249306 -4 + chr14 66494644 66494743 chr14,66494477,66494743,-,MER113,DNA,hAT-Charlie,-45,476,197,66494432,66494939 +5 - chr14 66494743 66494856 chr14,66494743,66495041,+,AluSc8,SINE,Alu,1,297,-14,66494743,66495055 -2 + chr14 66498353 66498553 chr14,66498346,66498553,+,AmnSINE1,SINE,5S-Deu-L2,63,285,-290,66498284,66498843 +5 + chr14 66504875 66504990 chr14,66504717,66505003,+,AluSx,SINE,Alu,1,288,-24,66504717,66505027 -3 + chr14 66969676 66969816 chr14,66969517,66969827,+,AluSz6,SINE,Alu,1,309,-3,66969517,66969830 -1 + chr14 68130066 68130194 chr14,68129906,68130194,-,MLT1E3,LTR,ERVL-MaLR,0,624,316,68129906,68130509 +4 - chr14 68980153 68980187 chr14,68980153,68980256,-,MIR3,SINE,MIR,-21,187,110,68980132,68980365 -4 - chr14 68981522 68981562 chr14,68981522,68981984,-,L2c,LINE,L2,0,3387,2910,68981522,68984893 -5 - chr14 68987345 68987386 chr14,68987316,68987386,+,MIRc,SINE,MIR,120,189,-79,68987197,68987465 +2 + chr14 68987393 68987463 chr14,68987393,68987713,-,L2a,LINE,L2,0,3426,3100,68987393,68990812 -5 - chr14 69183020 69183199 chr14,69182989,69183199,-,LTR37A,LTR,ERV1,-214,212,22,69182775,69183220 +5 - chr14 69183469 69183782 chr14,69183469,69183782,-,HAL1,LINE,L1,-2039,468,119,69181430,69183900 +6 - chr14 69183782 69183875 chr14,69183782,69183875,+,MER89,LTR,ERV1,1,88,-471,69183782,69184346 -6 + chr14 69183844 69184183 chr14,69183844,69184183,+,MER89,LTR,ERV1,197,556,-3,69183648,69184186 -5 + chr14 69190946 69191043 chr14,69190946,69191063,+,FLAM_C,SINE,Alu,17,135,-8,69190930,69191071 -2 + chr14 69196040 69196201 chr14,69195885,69196372,-,MLT1C,LTR,ERVL-MaLR,0,467,1,69195885,69196372 +3 - chr14 69213907 69214092 chr14,69213900,69214467,-,L1MEd,LINE,L1,-5397,1689,1064,69208503,69215530 +1 - chr14 69239166 69239203 chr14,69239024,69239203,-,MamRep137,DNA,TcMar-Tigger,-302,208,31,69238722,69239233 +5 - chr14 69257054 69257209 chr14,69257004,69257209,+,MIRb,SINE,MIR,31,267,-1,69256974,69257210 -4 + chr14 69357010 69357259 chr14,69357005,69357259,-,L2c,LINE,L2,-10,3377,3125,69356995,69360383 -1 - chr14 69357267 69357342 chr14,69357267,69357342,+,L3b,LINE,CR1,5132,5202,-30,69352136,69357372 +6 + chr14 69357730 69357879 chr14,69357730,69357879,+,MER5A,DNA,hAT-Charlie,3,176,-13,69357728,69357892 +6 + chr14 69358837 69359287 chr14,69358837,69359287,+,L2c,LINE,L2,2938,3387,0,69355900,69359287 +6 + chr14 69617122 69617304 chr14,69616812,69617304,-,L1MB7,LINE,L1,-31,6153,5640,69616781,69622943 -1 - chr14 70223765 70223848 chr14,70223543,70223937,-,MER61B,LTR,ERV1,-9,418,1,70223534,70223937 -1 - chr14 70224075 70224143 chr14,70224075,70224143,-,MLT1J2,LTR,ERVL-MaLR,-274,174,111,70223801,70224253 -6 - chr14 70227574 70227704 chr14,70227574,70227989,-,MSTA,LTR,ERVL-MaLR,0,428,1,70227574,70227989 -4 - chr14 70229302 70229569 chr14,70229154,70229759,+,L1P3,LINE,L1,5105,5711,-443,70224050,70230202 +3 + chr14 70291530 70291859 chr14,70291530,70292189,+,L2a,LINE,L2,2778,3426,0,70288753,70292189 +5 + chr14 70425812 70426004 chr14,70425416,70426004,-,HERV3-int,LTR,ERV1,-5709,622,34,70419707,70426037 +5 - chr14 70426077 70426090 chr14,70426077,70426450,-,MER34D,LTR,ERV1,-52,527,149,70426025,70426598 +2 - chr14 70483435 70483544 chr14,70483340,70483544,-,MLT-int,LTR,ERVL-MaLR,-1325,410,203,70482015,70483746 +4 - chr14 70483554 70483756 chr14,70483554,70487468,+,L1MA6,LINE,L1,3682,6900,-1,70479873,70487469 -1 + chr14 70547290 70547464 chr14,70547290,70553322,+,L1HS,LINE,L1,124,6155,0,70547167,70553322 -1 + chr14 70609352 70609775 chr14,70609352,70609775,+,LTR47B4,LTR,ERVL,1,434,0,70609352,70609775 -6 + chr14 70610088 70610391 chr14,70610088,70610391,+,7SLRNA,srpRNA,srpRNA,4,313,-7,70610085,70610398 -6 + chr14 70610464 70610709 chr14,70610464,70610709,-,MIR,SINE,MIR,0,262,2,70610464,70610710 +6 - chr14 70610734 70610951 chr14,70610734,70610951,-,L2b,LINE,L2,-243,3132,2914,70610491,70613864 +6 - chr14 70611086 70611146 chr14,70611086,70611146,-,L2b,LINE,L2,-698,2721,2662,70610388,70613807 +6 - chr14 70633762 70633818 chr14,70633695,70633818,-,L2c,LINE,L2,-153,3234,3116,70633542,70636933 +4 - chr14 70641008 70641138 chr14,70640715,70641138,+,L2c,LINE,L2,2937,3362,-25,70637779,70641163 -4 + chr14 70703695 70703787 chr14,70703524,70703809,-,AluJo,SINE,Alu,-17,295,1,70703507,70703809 -3 - chr14 70712129 70712153 chr14,70712129,70712450,+,L2c,LINE,L2,2592,2911,-508,70709538,70712958 +5 + chr14 70815275 70815403 chr14,70815275,70815569,+,L1ME4a,LINE,L1,5827,6107,-17,70809449,70815586 +5 + chr14 71141125 71141146 chr14,71141090,71141146,-,MIR,SINE,MIR,-65,197,149,71141025,71141294 +5 - chr14 71141146 71141362 chr14,71141146,71141362,-,L1MB3,LINE,L1,-2,6181,5975,71141144,71147336 +6 - chr14 71141362 71141604 chr14,71141362,71141604,-,AluSp,SINE,Alu,-5,308,68,71141357,71141671 +6 - chr14 71141604 71141860 chr14,71141604,71141860,-,L1MB3,LINE,L1,-209,5974,5701,71141395,71147560 +6 - chr14 71141860 71141986 chr14,71141860,71141986,-,MIR,SINE,MIR,-114,148,23,71141746,71142008 +6 - chr14 71142001 71142034 chr14,71142001,71142034,+,(CACC)n,Simple_repeat,Simple_repeat,1,33,0,71142001,71142034 -6 + chr14 71143047 71143253 chr14,71143047,71143431,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,71143047,71143431 +1 - chr14 71181456 71181579 chr14,71181399,71181579,-,MLT1L,LTR,ERVL-MaLR,-361,249,45,71181038,71181623 -1 - chr14 71182033 71182106 chr14,71182033,71182357,-,L1ME4a,LINE,L1,-225,5899,5569,71181808,71187925 -5 - chr14 71217806 71217973 chr14,71217595,71217973,+,MLT1A,LTR,ERVL-MaLR,4,372,-2,71217592,71217975 +2 + chr14 71218135 71218177 chr14,71218135,71218177,+,(TTTC)n,Simple_repeat,Simple_repeat,1,42,0,71218135,71218177 +6 + chr14 71218178 71218216 chr14,71218178,71218291,-,AluSz,SINE,Alu,-198,114,1,71217980,71218291 -5 - chr14 71219100 71219122 chr14,71219058,71219122,-,Tigger12,DNA,TcMar-Tigger,-1787,688,622,71217271,71219743 -1 - chr14 71219204 71219369 chr14,71219204,71219369,-,AluJb,SINE,Alu,-11,301,137,71219193,71219505 -6 - chr14 71219375 71219919 chr14,71219375,71219919,-,MER41A,LTR,ERV1,0,554,1,71219375,71219919 -6 - chr14 71219920 71220050 chr14,71219920,71220050,-,AluJo,SINE,Alu,-182,130,1,71219738,71220050 -6 - chr14 71221023 71221154 chr14,71221023,71221154,+,MIR1_Amn,SINE,MIR,44,183,-85,71220980,71221239 +6 + chr14 71221240 71221345 chr14,71221240,71221345,+,L2c,LINE,L2,3254,3359,-28,71217987,71221373 +6 + chr14 71221345 71221776 chr14,71221345,71221776,+,LTR47A,LTR,ERVL,1,452,0,71221345,71221776 +6 + chr14 71222242 71222333 chr14,71222242,71222333,+,Tigger12c,DNA,TcMar-Tigger,8,101,-633,71222235,71222966 +6 + chr14 71222339 71222635 chr14,71222339,71222635,-,AluSg,SINE,Alu,-14,296,1,71222325,71222635 -6 - chr14 71295263 71295456 chr14,71295188,71295654,-,MLT1F,LTR,ERVL-MaLR,-1,559,7,71295187,71295660 +3 - chr14 71310558 71310679 chr14,71310532,71310704,+,AluSg4,SINE,Alu,130,302,-8,71310403,71310712 -3 + chr14 71848606 71848736 chr14,71842964,71848996,-,L1PA2,LINE,L1,-1,6154,124,71842963,71849119 -1 - chr14 73242993 73243292 chr14,73242993,73243292,-,AluSx1,SINE,Alu,-13,299,2,73242980,73243293 +6 - chr14 73243587 73243678 chr14,73243587,73243678,+,MIRb,SINE,MIR,108,215,-47,73243480,73243725 -6 + chr14 73243723 73244243 chr14,73243723,73244243,-,MLT1J,LTR,ERVL-MaLR,0,512,3,73243723,73244245 +6 - chr14 73274027 73274081 chr14,73274027,73274087,+,OldhAT1,DNA,hAT-Ac,2366,2423,-425,73271662,73274512 -1 + chr14 73463492 73463831 chr14,73463309,73463831,-,MLT1F2,LTR,ERVL-MaLR,-2,558,5,73463307,73463835 -2 - chr14 73463831 73463879 chr14,73463831,73463887,+,MIRb,SINE,MIR,152,206,-62,73463680,73463949 +5 + chr14 73477125 73477175 chr14,73477095,73477406,-,AluSx1,SINE,Alu,-2,310,1,73477093,73477406 -5 - chr14 73517233 73517311 chr14,73517162,73517311,-,AluJo,SINE,Alu,-115,197,50,73517047,73517360 +5 - chr14 73517311 73517386 chr14,73517311,73517386,+,L1MB7,LINE,L1,6109,6183,-1,73511203,73517387 -6 + chr14 73517395 73517483 chr14,73517395,73517692,+,AluJo,SINE,Alu,1,309,-3,73517395,73517695 -2 + chr14 73519963 73520015 chr14,73519735,73520015,+,AluSc,SINE,Alu,1,306,-3,73519735,73520018 -4 + chr14 73520269 73520495 chr14,73520269,73520495,-,MIRb,SINE,MIR,-14,254,9,73520255,73520503 +6 - chr14 73530152 73530238 chr14,73529957,73530238,-,AluJb,SINE,Alu,-6,306,29,73529951,73530266 -2 - chr14 73530277 73530363 chr14,73530277,73530363,-,MER5A,DNA,hAT-Charlie,-56,133,46,73530221,73530408 -6 - chr14 73580694 73580958 chr14,73580372,73580958,-,LTR38C,LTR,ERV1,-2,709,9,73580370,73580966 -1 - chr14 73580974 73581027 chr14,73580974,73581027,-,AluJo,SINE,Alu,-254,58,6,73580720,73581032 -6 - chr14 73581031 73581164 chr14,73581031,73581164,-,L1MA9,LINE,L1,-59,6253,6141,73580972,73587304 -6 - chr14 73581164 73581439 chr14,73581164,73581439,-,MLT1A0,LTR,ERVL-MaLR,0,365,79,73581164,73581517 -6 - chr14 73581443 73581480 chr14,73581443,73581480,+,(TG)n,Simple_repeat,Simple_repeat,1,37,0,73581443,73581480 +6 + chr14 73581590 73581764 chr14,73581590,73581764,-,MIR,SINE,MIR,-17,213,32,73581573,73581795 -6 - chr14 73582122 73582401 chr14,73582122,73582401,+,LTR26,LTR,ERV1,1,282,-321,73582122,73582722 +6 + chr14 73582401 73582918 chr14,73582401,73582994,+,LTR43,LTR,ERV1,1,600,-2,73582401,73582996 +5 + chr14 73616708 73616843 chr14,73616703,73616843,-,L1PB3,LINE,L1,0,6154,6015,73616703,73622857 +5 - chr14 73698518 73698549 chr14,73698518,73698549,+,(TGTT)n,Simple_repeat,Simple_repeat,1,33,0,73698518,73698549 -6 + chr14 73698557 73698607 chr14,73698557,73698743,-,AluSx,SINE,Alu,-124,188,1,73698433,73698743 +2 - chr14 73700164 73700351 chr14,73700073,73700369,+,AluSz,SINE,Alu,5,299,-13,73700069,73700382 -1 + chr14 73789064 73789116 chr14,73789064,73789589,+,MLT1F2,LTR,ERVL-MaLR,1,553,-7,73789064,73789596 +4 + chr14 73803095 73803193 chr14,73803095,73803193,+,MIR3,SINE,MIR,44,140,-68,73803052,73803261 +6 + chr14 73803215 73803270 chr14,73803215,73803310,-,Charlie23a,DNA,hAT-Charlie,-4,335,238,73803211,73803547 -5 - chr14 73822559 73823293 chr14,73822473,73823293,-,L1MB7,LINE,L1,-313,5871,5009,73822160,73828301 +5 - chr14 73830125 73830135 chr14,73830125,73830338,-,MIR,SINE,MIR,-8,254,13,73830117,73830350 +1 - chr14 73905549 73905636 chr14,73905549,73905638,-,MIR3,SINE,MIR,-85,123,31,73905464,73905668 -5 - chr14 73913067 73913201 chr14,73913050,73913201,-,AluJo,SINE,Alu,0,312,167,73913050,73913367 +5 - chr14 73913201 73913751 chr14,73913201,73913751,+,LTR61,LTR,ERV1,1,559,0,73913201,73913751 -6 + chr14 73913751 73913784 chr14,73913751,73913784,-,AluJo,SINE,Alu,-146,166,134,73913605,73913917 +6 - chr14 73913784 73913916 chr14,73913784,73913916,-,AluJr,SINE,Alu,-181,131,2,73913603,73913917 +6 - chr14 73913916 73913934 chr14,73913916,73913934,-,AluJo,SINE,Alu,-179,133,120,73913737,73914053 +6 - chr14 73913940 73914030 chr14,73913940,73914030,-,L1M4,LINE,L1,-1894,4252,4166,73912046,73918195 +6 - chr14 73914030 73914188 chr14,73914030,73914188,-,AluJr,SINE,Alu,-5,307,144,73914025,73914331 +6 - chr14 73914188 73914473 chr14,73914188,73914473,-,AluSz,SINE,Alu,-21,291,1,73914167,73914473 +6 - chr14 73914473 73914617 chr14,73914473,73914617,-,AluJr,SINE,Alu,-170,142,1,73914303,73914617 +6 - chr14 73914621 73914872 chr14,73914621,73914927,-,AluSx,SINE,Alu,-5,307,1,73914616,73914927 +2 - chr14 73915638 73915957 chr14,73915638,73915957,-,L1M4,LINE,L1,-2103,4043,3723,73913535,73919679 +6 - chr14 73915957 73916084 chr14,73915957,73916084,+,AluJo,SINE,Alu,1,127,-185,73915957,73916269 -6 + chr14 73916096 73916179 chr14,73916096,73916179,+,GA-rich,Low_complexity,Low_complexity,1,83,0,73916096,73916179 -6 + chr14 73916192 73916259 chr14,73916192,73916259,-,L1MC,LINE,L1,-2424,3722,3649,73913768,73919907 +6 - chr14 73916266 73916480 chr14,73916266,73916480,-,AluSz6,SINE,Alu,-98,214,1,73916168,73916480 +6 - chr14 73916491 73916691 chr14,73916491,73916691,-,L1MC5a,LINE,L1,-1207,1570,1370,73915284,73918060 +6 - chr14 73916691 73916806 chr14,73916691,73917000,+,AluJb,SINE,Alu,1,303,-9,73916691,73917009 -2 + chr14 73922703 73922736 chr14,73922703,73922777,-,L2c,LINE,L2,-10,3377,3305,73922693,73926081 +2 - chr14 74289127 74289141 chr14,74288831,74289141,+,AluSg,SINE,Alu,1,310,0,74288831,74289141 -5 + chr14 74293427 74293657 chr14,74293427,74293657,+,MIRb,SINE,MIR,21,268,0,74293407,74293657 -6 + chr14 74293652 74293950 chr14,74293652,74293950,-,L2b,LINE,L2,-6,3369,3062,74293646,74297011 +6 - chr14 74294050 74294354 chr14,74294050,74294354,-,AluSx1,SINE,Alu,-10,302,1,74294040,74294354 +6 - chr14 74472328 74472360 chr14,74472328,74472374,+,(TTTGGT)n,Simple_repeat,Simple_repeat,1,47,0,74472328,74472374 -1 + chr14 74614923 74615241 chr14,74614923,74615241,-,LTR78B,LTR,ERV1,-925,371,5,74613998,74615245 +6 - chr14 74615245 74615334 chr14,74615245,74615382,+,L2a,LINE,L2,3279,3425,-1,74611967,74615383 -2 + chr14 75008390 75008481 chr14,75008390,75008882,-,L2b,LINE,L2,0,3375,2817,75008390,75011698 +1 - chr14 75011389 75011505 chr14,75011389,75011505,-,MER5A,DNA,hAT-Charlie,-77,112,1,75011312,75011505 +6 - chr14 75012254 75012276 chr14,75012254,75012276,+,(AAAC)n,Simple_repeat,Simple_repeat,1,22,0,75012254,75012276 -6 + chr14 75177267 75177307 chr14,75177267,75177307,+,(TAT)n,Simple_repeat,Simple_repeat,1,40,0,75177267,75177307 +6 + chr14 75271638 75271935 chr14,75271636,75271935,+,AluJo,SINE,Alu,1,309,-3,75271636,75271938 +5 + chr14 75271936 75271950 chr14,75271936,75272451,-,L2a,LINE,L2,0,3426,2866,75271936,75275316 -5 - chr14 75296563 75296638 chr14,75296563,75296863,+,AluSz,SINE,Alu,1,300,-12,75296563,75296875 +5 + chr14 75423814 75423870 chr14,75423814,75423870,+,(AT)n,Simple_repeat,Simple_repeat,1,56,0,75423814,75423870 -6 + chr14 75424223 75424359 chr14,75424223,75424359,-,MER102b,DNA,hAT-Charlie,0,341,183,75424223,75424541 +6 - chr14 75424359 75424760 chr14,75424359,75424760,+,MLT1I,LTR,ERVL-MaLR,2,411,0,75424358,75424760 -6 + chr14 75424760 75424833 chr14,75424760,75424833,-,MER102b,DNA,hAT-Charlie,-159,182,116,75424601,75424948 +6 - chr14 75424852 75424989 chr14,75424852,75424989,-,FLAM_A,SINE,Alu,-8,134,3,75424844,75424991 +6 - chr14 75425485 75425740 chr14,75425485,75425740,-,MLT1K,LTR,ERVL-MaLR,0,595,337,75425485,75426076 +6 - chr14 75425832 75425890 chr14,75425832,75425890,-,MLT1K,LTR,ERVL-MaLR,-1,594,535,75425831,75426424 +6 - chr14 75426013 75426187 chr14,75426013,75426187,-,MamRep488,DNA,hAT-Tip100,-28,191,1,75425985,75426187 +6 - chr14 75574888 75574982 chr14,75574539,75574982,-,HAL1,LINE,L1,-646,1861,1393,75573893,75576374 +5 - chr14 75576463 75576545 chr14,75576463,75576589,+,MIR3,SINE,MIR,59,187,-81,75576405,75576670 -2 + chr14 75837154 75837376 chr14,75836955,75837400,-,MLT1F,LTR,ERVL-MaLR,0,548,120,75836955,75837519 +1 - chr14 75847671 75847698 chr14,75847515,75847754,-,MIR,SINE,MIR,-12,250,9,75847503,75847762 +1 - chr14 75970928 75970988 chr14,75970928,75970988,+,L2b,LINE,L2,3328,3387,0,75967601,75970988 +6 + chr14 75970994 75971058 chr14,75970994,75971058,-,MIRb,SINE,MIR,-182,86,23,75970812,75971080 -6 - chr14 75971444 75971487 chr14,75971444,75971487,-,MIRb,SINE,MIR,-195,73,31,75971249,75971517 -6 - chr14 76279173 76279319 chr14,76279119,76279319,-,L3b,LINE,CR1,-26,5206,4953,76279093,76284271 -1 - chr14 76279541 76279683 chr14,76279541,76279683,+,L2c,LINE,L2,3262,3387,0,76276280,76279683 +6 + chr14 76279991 76280021 chr14,76279991,76280021,+,G-rich,Low_complexity,Low_complexity,1,33,0,76279991,76280021 +6 + chr14 76280542 76280626 chr14,76280542,76280626,+,L2b,LINE,L2,3291,3375,-12,76277252,76280638 +6 + chr14 76280699 76280907 chr14,76280699,76280907,+,MIRb,SINE,MIR,5,216,-52,76280695,76280959 +6 + chr14 76281038 76281171 chr14,76281038,76281171,+,FLAM_C,SINE,Alu,1,133,-10,76281038,76281181 +6 + chr14 76281038 76281153 chr14,76281038,76281171,+,FLAM_C,SINE,Alu,1,133,-10,76281038,76281181 -2 + chr14 76281183 76282107 chr14,76281183,76282107,+,L1MB2,LINE,L1,5220,6171,0,76275964,76282107 +6 + chr14 76282126 76282604 chr14,76282126,76282604,+,L1ME1,LINE,L1,4548,5009,-1137,76277579,76283741 +6 + chr14 76282613 76283103 chr14,76282613,76283149,+,MLT2B4,LTR,ERVL,10,552,-4,76282604,76283153 +5 + chr14 76295914 76295964 chr14,76295633,76295964,+,L2c,LINE,L2,3054,3354,-21,76292580,76295985 -4 + chr14 76495543 76495562 chr14,76495543,76495562,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,76495543,76495562 -6 + chr14 76601477 76601592 chr14,76601394,76601808,-,MSTA,LTR,ERVL-MaLR,0,428,1,76601394,76601808 +3 - chr14 76711683 76711762 chr14,76711433,76711762,+,Charlie1a,DNA,hAT-Charlie,1110,1455,0,76710324,76711762 -4 + chr14 76711816 76711861 chr14,76711816,76711985,+,L1ME4c,LINE,L1,419,573,-257,76711398,76712242 -2 + chr14 76726519 76726712 chr14,76726324,76726936,-,LTR1A2,LTR,ERV1,-187,650,3,76726137,76726938 +1 - chr14 76761186 76761200 chr14,76761012,76761200,-,MIR3,SINE,MIR,-15,193,4,76760997,76761203 +4 - chr14 76774648 76774767 chr14,76774648,76774767,+,L2c,LINE,L2,3259,3381,-6,76771390,76774773 -6 + chr14 76774778 76774913 chr14,76774778,76774998,+,MIRb,SINE,MIR,3,232,-36,76774776,76775034 -2 + chr14 76780708 76780803 chr14,76780528,76780803,-,MER102a,DNA,hAT-Charlie,-3,327,1,76780525,76780803 +5 - chr14 76786085 76786143 chr14,76785986,76786143,-,MIR1_Amn,SINE,MIR,-39,191,34,76785947,76786176 +4 - chr14 76786143 76786461 chr14,76786143,76786461,-,AluSp,SINE,Alu,0,313,1,76786143,76786461 +1 - chr14 76786461 76786486 chr14,76786461,76786486,-,MIRc,SINE,MIR,-235,33,12,76786226,76786497 +6 - chr14 76921840 76921859 chr14,76921631,76921859,+,MIRb,SINE,MIR,24,268,0,76921608,76921859 -5 + chr14 76923553 76923677 chr14,76923464,76923677,+,MIRb,SINE,MIR,3,222,-46,76923462,76923723 -4 + chr14 76923715 76923748 chr14,76923715,76923774,-,L2c,LINE,L2,-230,3157,3099,76923485,76926872 +2 - chr14 76959706 76959753 chr14,76959706,76959809,+,MLT1L,LTR,ERVL-MaLR,473,577,-33,76959234,76959842 +4 + chr14 76962331 76962607 chr14,76962285,76962610,-,L2c,LINE,L2,0,3387,3045,76962285,76965654 -3 - chr14 76965615 76965628 chr14,76965588,76965628,-,MIR3,SINE,MIR,-49,159,120,76965539,76965747 -2 - chr14 77028866 77028898 chr14,77028866,77028898,+,(CCCCT)n,Simple_repeat,Simple_repeat,1,32,0,77028866,77028898 +6 + chr14 77029636 77029940 chr14,77029636,77029940,-,AluSx1,SINE,Alu,-9,303,1,77029627,77029940 -6 - chr14 77030031 77030064 chr14,77030031,77030064,+,(ATTTTT)n,Simple_repeat,Simple_repeat,1,53,0,77030031,77030064 +6 + chr14 77030064 77030084 chr14,77030064,77030084,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,77030064,77030084 +6 + chr14 77030129 77030298 chr14,77030129,77030298,+,MIR,SINE,MIR,8,188,-74,77030122,77030372 +6 + chr14 77030304 77030602 chr14,77030304,77030602,-,AluJb,SINE,Alu,-16,296,1,77030288,77030602 -6 - chr14 77030733 77031029 chr14,77030733,77031029,-,AluSx1,SINE,Alu,-15,297,1,77030718,77031029 -6 - chr14 77031029 77031175 chr14,77031029,77031175,-,MIR,SINE,MIR,-64,198,33,77030965,77031207 -6 - chr14 77031217 77031370 chr14,77031217,77031370,+,MamRep488,DNA,hAT-Tip100,47,218,-1,77031171,77031371 +6 + chr14 77048217 77048241 chr14,77048217,77048241,+,(TGTA)n,Simple_repeat,Simple_repeat,1,25,0,77048217,77048241 -6 + chr14 77048285 77048421 chr14,77048285,77048449,+,MIRb,SINE,MIR,1,167,-101,77048285,77048550 -2 + chr14 77066071 77066194 chr14,77066047,77066217,-,AluJo,SINE,Alu,-8,304,135,77066039,77066351 -3 - chr14 77067416 77067721 chr14,77067416,77067721,-,AluSz,SINE,Alu,0,312,7,77067416,77067727 -6 - chr14 77067789 77068038 chr14,77067789,77068038,-,MIR,SINE,MIR,-1,261,2,77067788,77068039 -6 - chr14 77068658 77068840 chr14,77068658,77068840,-,MIR,SINE,MIR,-25,243,1,77068633,77068840 -6 - chr14 77069158 77069400 chr14,77069158,77069400,+,L1ME4a,LINE,L1,5800,6054,-70,77063359,77069470 +5 + chr14 77069180 77069400 chr14,77069158,77069400,+,L1ME4a,LINE,L1,5800,6054,-70,77063359,77069470 -5 + chr14 77069503 77069541 chr14,77069503,77069541,+,(A)n,Simple_repeat,Simple_repeat,1,38,0,77069503,77069541 -6 + chr14 77070567 77070660 chr14,77070567,77070660,+,MIR3,SINE,MIR,16,107,-101,77070552,77070761 -6 + chr14 77071710 77071772 chr14,77071628,77072069,-,MSTB2,LTR,ERVL-MaLR,0,457,1,77071628,77072069 +3 - chr14 77074542 77074719 chr14,77074257,77074719,-,MLT1C,LTR,ERVL-MaLR,0,467,1,77074257,77074719 +5 - chr14 77074719 77074868 chr14,77074719,77074868,-,MLT1F,LTR,ERVL-MaLR,-395,153,1,77074324,77074868 +6 - chr14 77074988 77075127 chr14,77074988,77075127,+,LTR78,LTR,ERV1,175,325,-979,77074814,77076106 -6 + chr14 77075181 77075364 chr14,77075181,77075419,+,LTR78,LTR,ERV1,496,733,-571,77074686,77075990 -2 + chr14 77076105 77076235 chr14,77075719,77076235,+,LTR78,LTR,ERV1,734,1273,-31,77074986,77076266 -1 + chr14 77081362 77081500 chr14,77081276,77081573,-,Zaphod,DNA,hAT-Tip100,-2048,1983,1686,77079228,77083258 +3 - chr14 77141538 77141578 chr14,77141538,77141578,+,(GCC)n,Simple_repeat,Simple_repeat,1,40,0,77141538,77141578 +6 + chr14 77142137 77142362 chr14,77142137,77142362,+,MIR,SINE,MIR,5,241,-21,77142133,77142383 +6 + chr14 77142375 77142619 chr14,77142375,77142619,-,MIRb,SINE,MIR,-1,267,9,77142374,77142627 -6 - chr14 78279572 78279687 chr14,78279500,78279687,-,MIRb,SINE,MIR,-45,223,39,78279455,78279725 +5 - chr14 78283280 78283376 chr14,78283280,78283511,+,MER58B,DNA,hAT-Charlie,1,231,-110,78283280,78283621 -1 + chr14 78695321 78695363 chr14,78694904,78695363,-,MLT1D,LTR,ERVL-MaLR,0,505,1,78694904,78695363 +5 - chr14 78744398 78744428 chr14,78744138,78744428,-,AluSx,SINE,Alu,-12,300,1,78744126,78744428 +5 - chr14 78744535 78744654 chr14,78744535,78744654,-,MIRc,SINE,MIR,-29,179,63,78744506,78744716 +6 - chr14 78744874 78745321 chr14,78744874,78745583,-,MamRep605,LTR?,LTR?,-88,761,46,78744786,78745628 +2 - chr14 78753724 78753770 chr14,78753609,78753770,-,MIR,SINE,MIR,-47,215,38,78753562,78753807 +4 - chr14 78753797 78753878 chr14,78753797,78753930,+,L2c,LINE,L2,2759,2888,-531,78751039,78754461 -1 + chr14 79246728 79246745 chr14,79246728,79246967,+,Charlie8,DNA,hAT-Charlie,34,265,-2163,79246695,79249130 -2 + chr14 79248922 79249023 chr14,79248686,79249266,-,LTR36,LTR,ERV1,0,611,1,79248686,79249266 +1 - chr14 79611418 79611604 chr14,79611337,79611604,+,AluY,SINE,Alu,21,286,-25,79611317,79611629 -5 + chr14 79611722 79611830 chr14,79611722,79611936,+,MIRb,SINE,MIR,2,262,0,79611721,79611936 -2 + chr14 79632278 79632341 chr14,79631286,79632341,+,LTR12D,LTR,ERV1,1,1131,-123,79631286,79632464 -4 + chr14 79632342 79632391 chr14,79632342,79632521,-,L2a,LINE,L2,-252,3174,2960,79632090,79635480 +2 - chr14 79661726 79661779 chr14,79661726,79661785,+,(TTC)n,Simple_repeat,Simple_repeat,1,60,0,79661726,79661785 -2 + chr14 79972336 79972450 chr14,79972336,79972450,-,AmnSINE1,SINE,5S-Deu-L2,-138,437,316,79972198,79972765 +6 - chr14 80358715 80358982 chr14,80358715,80359002,+,AluJb,SINE,Alu,1,287,-25,80358715,80359027 +4 + chr14 80373426 80373596 chr14,80373426,80373925,-,L2a,LINE,L2,-2,3424,2915,80373424,80376839 -4 - chr14 80393983 80393996 chr14,80393830,80393996,-,Arthur1B,DNA,hAT-Tip100,-1053,172,1,80392777,80393996 -2 - chr14 80397030 80397179 chr14,80396905,80397325,+,MER47B,DNA,TcMar-Tigger,6,418,0,80396900,80397325 +3 + chr14 80403120 80403171 chr14,80402439,80403171,-,LTR48,LTR,ERV1,0,787,3,80402439,80403173 -2 - chr14 80455128 80455246 chr14,80455113,80455246,+,MLT1J,LTR,ERVL-MaLR,63,202,-310,80455051,80455556 +2 + chr14 80455279 80455449 chr14,80455279,80455449,+,MLT1J,LTR,ERVL-MaLR,244,425,-23,80455036,80455472 +6 + chr14 81170109 81170414 chr14,81169669,81171382,+,L1P4a,LINE,L1,23,1809,-4694,81169647,81176076 -1 + chr14 81442315 81442442 chr14,81442315,81442840,-,MER113,DNA,hAT-Charlie,0,521,1,81442315,81442840 +2 - chr14 81449889 81450021 chr14,81449853,81450021,-,MER5B,DNA,hAT-Charlie,0,178,3,81449853,81450023 +4 - chr14 81622661 81623061 chr14,81622661,81624332,-,LTR12C,LTR,ERV1,-1,1578,1,81622660,81624332 +1 - chr14 81727882 81728220 chr14,81727882,81728451,-,MLT1G1,LTR,ERVL-MaLR,0,579,1,81727882,81728451 +2 - chr14 81741002 81741095 chr14,81740855,81741204,+,MLT1A0,LTR,ERVL-MaLR,13,365,0,81740843,81741204 +1 + chr14 81827807 81827901 chr14,81827599,81828061,-,L2a,LINE,L2,-421,2998,2539,81827178,81830599 -3 - chr14 82030106 82030244 chr14,82030037,82030244,-,MIR3,SINE,MIR,-27,203,2,82030010,82030245 -2 - chr14 82642620 82642674 chr14,82642501,82642782,+,MER61B,LTR,ERV1,1,398,-29,82642501,82642811 +1 + chr14 82650927 82650996 chr14,82650927,82650996,+,GA-rich,Low_complexity,Low_complexity,1,70,0,82650927,82650996 +6 + chr14 82651027 82651069 chr14,82651027,82651069,-,L1MC2,LINE,L1,-15,6329,6287,82651012,82657355 -6 - chr14 82651065 82651605 chr14,82651065,82651605,-,L1MC3,LINE,L1,-1185,6600,6132,82649880,82657736 -6 - chr14 82651595 82651657 chr14,82651595,82651936,-,L1P1,LINE,L1,-520,5635,5293,82651075,82657228 -5 - chr14 82788488 82788867 chr14,82788488,82788947,+,MLT1C,LTR,ERVL-MaLR,6,467,0,82788483,82788947 -2 + chr14 83017520 83017622 chr14,83017520,83017622,-,L2a,LINE,L2,-8,3418,3301,83017512,83020922 +6 - chr14 83039507 83039602 chr14,83039399,83039666,+,AluJo,SINE,Alu,34,298,-14,83039366,83039680 -1 + chr14 83906995 83907181 chr14,83906995,83907213,+,MIRb,SINE,MIR,16,253,-15,83906980,83907228 -2 + chr14 85234789 85234849 chr14,85234772,85234849,+,L2c,LINE,L2,3095,3173,-214,85231678,85235063 -4 + chr14 85234849 85234926 chr14,85234849,85235515,+,MER63C,DNA,hAT-Blackjack,1,752,-178,85234849,85235693 -2 + chr14 85388738 85388762 chr14,85388738,85388762,+,(AAAT)n,Simple_repeat,Simple_repeat,1,24,0,85388738,85388762 +6 + chr14 85398149 85398164 chr14,85397940,85398164,-,MIRb,SINE,MIR,-34,234,9,85397906,85398172 +4 - chr14 85407974 85408036 chr14,85407974,85408056,+,L1M4b,LINE,L1,21,113,-6754,85407954,85414810 +4 + chr14 85419815 85419862 chr14,85419815,85419862,+,(AAC)n,Simple_repeat,Simple_repeat,1,50,0,85419815,85419862 +6 + chr14 85524810 85525006 chr14,85524810,85525006,-,MIRc,SINE,MIR,-49,219,27,85524761,85525032 +6 - chr14 85934710 85934812 chr14,85934517,85934812,+,LTR12F,LTR,ERV1,237,506,-13,85934281,85934825 +1 + chr14 85934839 85934861 chr14,85934839,85935599,-,L1P4,LINE,L1,-530,5636,4843,85934309,85940441 -4 - chr14 86000861 86000953 chr14,86000671,86000971,-,AluJb,SINE,Alu,-7,305,5,86000664,86000975 -3 - chr14 86055459 86055484 chr14,86055459,86055653,-,L2,LINE,L2,-1180,2239,2034,86054279,86057686 +2 - chr14 86061518 86061561 chr14,86060937,86061561,-,L1MA9,LINE,L1,-7,6284,5595,86060930,86067155 +4 - chr14 86070885 86070967 chr14,86070885,86070974,+,MIRc,SINE,MIR,10,105,-163,86070876,86071137 +4 + chr14 86105014 86105054 chr14,86105014,86105097,+,MER5B,DNA,hAT-Charlie,17,98,-80,86104998,86105177 +5 + chr14 86129521 86129778 chr14,86129521,86129856,+,MER61A,LTR,ERV1,1,341,0,86129521,86129856 +5 + chr14 86401212 86401237 chr14,86400834,86401237,+,L1PA7,LINE,L1,5750,6154,0,86395085,86401237 +2 + chr14 86401237 86401263 chr14,86401237,86401263,+,(AGA)n,Simple_repeat,Simple_repeat,1,26,0,86401237,86401263 +6 + chr14 86905778 86905992 chr14,86904582,86905992,-,LTR12C,LTR,ERV1,0,1579,6,86904582,86905997 -1 - chr14 86906022 86906049 chr14,86906022,86906229,-,LTR104_Mam,LTR,Gypsy,-1285,224,17,86904737,86906245 -4 - chr14 86920261 86920334 chr14,86919634,86920462,-,L1MD1,LINE,L1,0,6633,5785,86919634,86926246 -3 - chr14 86921465 86921641 chr14,86921444,86921641,-,AluSz6,SINE,Alu,-17,295,86,86921427,86921726 -2 - chr14 86921685 86921770 chr14,86921685,86921770,+,(AT)n,Simple_repeat,Simple_repeat,1,87,0,86921685,86921770 +6 + chr14 86921781 86922755 chr14,86921781,86923333,-,L1MD1,LINE,L1,-1542,4995,3404,86920239,86926736 -5 - chr14 87251538 87251666 chr14,87251538,87251666,-,MamRTE1,LINE,RTE-BovB,-3558,254,118,87247980,87251783 -6 - chr14 87323753 87323812 chr14,87323514,87324136,-,L2,LINE,L2,-913,2506,1826,87322601,87325961 -1 - chr14 87332209 87332267 chr14,87332209,87332267,-,MIRb,SINE,MIR,-194,74,9,87332015,87332275 -6 - chr14 87368446 87368517 chr14,87368222,87368517,-,MER1B,DNA,hAT-Charlie,-53,286,3,87368169,87368519 +4 - chr14 87406380 87406487 chr14,87406364,87406574,+,MIR,SINE,MIR,29,257,-5,87406336,87406579 -3 + chr14 87568481 87568587 chr14,87568470,87568737,+,MLT1D,LTR,ERVL-MaLR,3,263,-242,87568468,87568979 +3 + chr14 87569057 87569112 chr14,87568737,87569112,-,MLT1B,LTR,ERVL-MaLR,0,390,1,87568737,87569112 -2 - chr14 87569112 87569355 chr14,87569112,87569355,+,MLT1D,LTR,ERVL-MaLR,264,502,-3,87568849,87569358 +6 + chr14 87634379 87634485 chr14,87634347,87634485,-,MLT1L,LTR,ERVL-MaLR,0,610,455,87634347,87634939 +5 - chr14 87634526 87634584 chr14,87634526,87634584,-,MLT1L,LTR,ERVL-MaLR,-213,299,241,87634313,87634824 +6 - chr14 87635406 87635523 chr14,87635152,87635586,-,Tigger2a,DNA,TcMar-Tigger,0,434,3,87635152,87635588 +3 - chr14 87655131 87655256 chr14,87655105,87655256,-,MLT1J1,LTR,ERVL-MaLR,-260,184,30,87654845,87655285 +4 - chr14 87710419 87710790 chr14,87709810,87711139,-,ERVL-E-int,LTR,ERVL,-5,5662,4327,87709805,87715465 +5 - chr14 87733892 87734298 chr14,87733892,87735317,-,LTR12C,LTR,ERV1,0,1579,3,87733892,87735319 +1 - chr14 87736402 87736782 chr14,87736391,87736782,-,L1PA10,LINE,L1,0,6168,5771,87736391,87742552 +5 - chr14 87741486 87741548 chr14,87741375,87741741,+,LTR37A,LTR,ERV1,5,426,0,87741371,87741741 -3 + chr14 87763706 87763810 chr14,87763629,87764010,-,MSTD,LTR,ERVL-MaLR,0,396,5,87763629,87764014 +3 - chr14 87813478 87813680 chr14,87813478,87813718,+,MIR,SINE,MIR,19,267,-1,87813460,87813719 +3 + chr14 87816132 87816221 chr14,87815970,87816221,-,MLT1C,LTR,ERVL-MaLR,0,467,200,87815970,87816420 +4 - chr14 87837916 87838297 chr14,87837916,87838297,+,MLT1B,LTR,ERVL-MaLR,2,389,-1,87837915,87838298 +6 + chr14 87838301 87838339 chr14,87838301,87838352,-,MLT2B4,LTR,ERVL,0,560,511,87838301,87838862 -5 - chr14 87872275 87872291 chr14,87872191,87872553,-,THE1B,LTR,ERVL-MaLR,0,364,1,87872191,87872553 +1 - chr14 88015517 88015528 chr14,88015205,88015528,-,Tigger20a,DNA,TcMar-Tigger,-12,961,620,88015193,88016147 +4 - chr14 88015537 88015611 chr14,88015537,88015755,-,MamGypLTR1c,LTR,Gypsy,-7,796,561,88015530,88016315 +1 - chr14 88023675 88023776 chr14,88023609,88023832,-,LTR33,LTR,ERVL,-275,240,13,88023334,88023844 +3 - chr14 88024550 88024669 chr14,88024340,88025306,+,LTR5B,LTR,ERVK,2,1002,0,88024339,88025306 +1 + chr14 88034592 88034666 chr14,88034547,88034666,+,MER102c,DNA,hAT-Charlie,203,331,0,88034345,88034666 -4 + chr14 88036937 88037079 chr14,88036935,88037113,+,MER103C,DNA,hAT-Charlie,1,207,-90,88036935,88037203 +1 + chr14 88086828 88086881 chr14,88086546,88086881,-,L1PA13,LINE,L1,-1,6162,5827,88086545,88092707 -2 - chr14 88086881 88087152 chr14,88086881,88087152,+,MLT1E1,LTR,ERVL-MaLR,320,654,0,88086562,88087152 +6 + chr14 88087320 88087346 chr14,88087320,88087358,+,A-rich,Low_complexity,Low_complexity,1,40,0,88087320,88087358 +5 + chr14 88097067 88097617 chr14,88097067,88097617,+,MLT1E3,LTR,ERVL-MaLR,1,568,-56,88097067,88097673 +6 + chr14 88160325 88160390 chr14,88160325,88160390,+,(CTCT)n,Simple_repeat,Simple_repeat,1,70,0,88160325,88160390 -6 + chr14 88178467 88178601 chr14,88178443,88178602,+,MARNA,DNA,TcMar-Mariner,211,373,-213,88178233,88178815 +3 + chr14 88513910 88513985 chr14,88513761,88514044,-,L1M8,LINE,L1,-765,1590,1270,88512996,88515313 -3 - chr14 88514989 88515000 chr14,88514799,88515000,-,L1MA10,LINE,L1,0,6334,5967,88514799,88520966 -2 - chr14 88515000 88515173 chr14,88515000,88515173,+,MLT1J,LTR,ERVL-MaLR,250,414,-98,88514751,88515271 +6 + chr14 88551688 88551819 chr14,88551688,88551840,-,FRAM,SINE,Alu,-23,153,1,88551665,88551840 -4 - chr14 88552087 88552211 chr14,88552087,88552211,-,MIR3,SINE,MIR,-48,160,30,88552039,88552240 -6 - chr14 88589423 88589847 chr14,88589423,88589847,+,L2a,LINE,L2,2281,2698,-721,88587143,88590568 +6 + chr14 88589847 88590152 chr14,88589847,88590152,+,AluSz6,SINE,Alu,1,305,-7,88589847,88590159 +6 + chr14 88590152 88590651 chr14,88590152,88590651,+,L2a,LINE,L2,2699,3292,-134,88587454,88590785 +6 + chr14 88590758 88590864 chr14,88590758,88590864,+,L2a,LINE,L2,3323,3426,0,88587436,88590864 +6 + chr14 88591158 88591465 chr14,88591158,88591465,+,AluSx1,SINE,Alu,2,310,-2,88591157,88591467 +6 + chr14 88591863 88592020 chr14,88591863,88592020,+,MIR,SINE,MIR,22,205,-57,88591842,88592077 +6 + chr14 88819608 88820055 chr14,88819575,88820055,-,LTR15,LTR,ERV1,-6,487,1,88819569,88820055 +5 - chr14 88820228 88820296 chr14,88820228,88820296,-,LTR102_Mam,LTR,ERVL,-84,767,706,88820144,88821001 +6 - chr14 88820296 88820435 chr14,88820296,88820435,+,U4,snRNA,snRNA,1,144,-1,88820296,88820436 -6 + chr14 88820435 88820683 chr14,88820435,88820683,-,LTR102_Mam,LTR,ERVL,-146,705,460,88820289,88821142 +6 - chr14 88820683 88821001 chr14,88820683,88821001,+,AluJb,SINE,Alu,2,304,-8,88820682,88821009 -6 + chr14 88821001 88821411 chr14,88821001,88821411,-,LTR102_Mam,LTR,ERVL,-392,459,1,88820609,88821411 +6 - chr14 88821411 88821528 chr14,88821411,88821528,-,MIR,SINE,MIR,-124,138,28,88821287,88821555 +6 - chr14 88821530 88821706 chr14,88821530,88821706,-,AluJb,SINE,Alu,-8,304,137,88821522,88821842 +6 - chr14 88821834 88821891 chr14,88821834,88821891,+,L2b,LINE,L2,3274,3333,-42,88818561,88821933 -6 + chr14 88821970 88822015 chr14,88821970,88822015,+,(AATTTAA)n,Simple_repeat,Simple_repeat,1,45,0,88821970,88822015 -6 + chr14 89353739 89353793 chr14,89353739,89353960,-,AluSx,SINE,Alu,-20,292,72,89353719,89354031 -5 - chr14 89355194 89355219 chr14,89355194,89355219,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,89355194,89355219 +6 + chr14 89355223 89355272 chr14,89355223,89355536,-,AluSx1,SINE,Alu,-10,302,1,89355213,89355536 -4 - chr14 89356327 89356403 chr14,89356115,89356403,+,AluSx1,SINE,Alu,1,289,-23,89356115,89356426 +2 + chr14 89486569 89486649 chr14,89486513,89486649,-,AmnSINE1,SINE,5S-Deu-L2,-190,385,254,89486323,89486902 +4 - chr14 89576537 89576567 chr14,89576537,89576567,+,A-rich,Low_complexity,Low_complexity,1,30,0,89576537,89576567 +6 + chr14 89576658 89576713 chr14,89576658,89576713,+,UCON15,Unknown,Unknown,89,143,-204,89576570,89576917 +6 + chr14 89576747 89576795 chr14,89576747,89576795,+,(CCTC)n,Simple_repeat,Simple_repeat,1,50,0,89576747,89576795 +6 + chr14 89631436 89631566 chr14,89631436,89631580,+,AluYc,SINE,Alu,140,283,-16,89631297,89631596 -1 + chr14 90383483 90383512 chr14,90383483,90383512,+,(GCCCTC)n,Simple_repeat,Simple_repeat,1,31,0,90383483,90383512 +6 + chr14 90383658 90383695 chr14,90383658,90383695,+,(TCGCCCT)n,Simple_repeat,Simple_repeat,1,39,0,90383658,90383695 +6 + chr14 90384200 90384341 chr14,90384200,90384341,-,MIRb,SINE,MIR,-130,138,2,90384070,90384342 -6 - chr14 90384684 90384797 chr14,90384684,90384797,-,MamRTE1,LINE,RTE-BovB,-92,3720,3582,90384592,90388378 -6 - chr14 90385085 90385339 chr14,90385085,90385339,-,AluSx1,SINE,Alu,-10,302,2,90385075,90385340 -6 - chr14 90385341 90385425 chr14,90385341,90385425,+,MIR3,SINE,MIR,116,202,-6,90385226,90385431 +6 + chr14 90385724 90385836 chr14,90385724,90385836,+,L2c,LINE,L2,3279,3387,0,90382446,90385836 +6 + chr14 90385909 90386202 chr14,90385909,90386202,+,AluJo,SINE,Alu,1,292,-20,90385909,90386222 +6 + chr14 90386695 90386991 chr14,90386695,90386991,-,AluSz6,SINE,Alu,-13,299,2,90386682,90386992 -6 - chr14 90387136 90387234 chr14,90387136,90387234,-,MIR3,SINE,MIR,-6,202,106,90387130,90387339 -6 - chr14 90387704 90387894 chr14,90387704,90387894,+,L1PB4,LINE,L1,5950,6152,-4,90381755,90387898 +6 + chr14 90452063 90452088 chr14,90451929,90452088,+,MIR,SINE,MIR,51,232,-36,90451879,90452124 -5 + chr14 90452162 90452313 chr14,90452162,90452439,+,MIRb,SINE,MIR,1,258,-10,90452162,90452449 -2 + chr14 90455097 90455117 chr14,90454962,90455148,-,MIRb,SINE,MIR,-39,229,34,90454923,90455181 +1 - chr14 90455570 90455688 chr14,90455570,90455688,+,MIR3,SINE,MIR,49,166,-42,90455522,90455730 +6 + chr14 90455958 90456144 chr14,90455958,90456144,+,L3,LINE,CR1,3781,3985,-114,90452178,90456258 +6 + chr14 90456174 90456222 chr14,90456174,90456222,-,L2b,LINE,L2,-38,3337,3290,90456136,90459511 -6 - chr14 90457023 90457158 chr14,90457023,90457603,+,L1MC5,LINE,L1,8549,9117,-187,90448475,90457790 +4 + chr14 90489012 90489078 chr14,90488884,90489078,-,MER58A,DNA,hAT-Charlie,-16,208,11,90488868,90489088 +5 - chr14 90489958 90490006 chr14,90489958,90490006,-,MLT1L,LTR,ERVL-MaLR,-1,609,561,90489957,90490566 +6 - chr14 90490199 90490287 chr14,90490199,90490287,+,MLT1M,LTR,ERVL-MaLR,131,220,-452,90490069,90490739 -6 + chr14 90491214 90491381 chr14,90491214,90491381,+,MIR,SINE,MIR,54,230,-32,90491161,90491413 -6 + chr14 90567630 90567718 chr14,90567630,90567797,+,MIR3,SINE,MIR,14,173,-89,90567617,90567886 +4 + chr14 90648372 90648650 chr14,90648341,90648650,-,AluJb,SINE,Alu,-3,309,2,90648338,90648651 -2 - chr14 90822365 90822476 chr14,90822220,90822496,+,AluSp,SINE,Alu,1,300,-13,90822220,90822509 -5 + chr14 90823109 90823153 chr14,90823109,90824217,+,MER11A,LTR,ERVK,1,1266,0,90823109,90824217 -2 + chr14 91244355 91244415 chr14,91244257,91244415,-,MER112,DNA,hAT-Charlie,-81,180,7,91244176,91244421 -2 - chr14 91250863 91251371 chr14,91250863,91251371,+,MLT1G1,LTR,ERVL-MaLR,1,526,-53,91250863,91251424 +6 + chr14 91251371 91251671 chr14,91251371,91251671,-,AluY,SINE,Alu,-10,301,1,91251361,91251671 -6 - chr14 91251671 91251724 chr14,91251671,91251724,+,MLT1G1,LTR,ERVL-MaLR,527,579,0,91251145,91251724 +6 + chr14 91251746 91251924 chr14,91251746,91251924,-,MIRc,SINE,MIR,-29,239,63,91251717,91251986 -6 - chr14 91258609 91258804 chr14,91258609,91258804,+,MIR,SINE,MIR,2,211,-57,91258608,91258861 +6 + chr14 91258817 91258959 chr14,91258817,91258959,+,AluJr4,SINE,Alu,1,125,-187,91258817,91259146 +6 + chr14 91421021 91421173 chr14,91421021,91421173,+,MIRc,SINE,MIR,87,252,-16,91420935,91421189 +6 + chr14 91572465 91572771 chr14,91572465,91572771,+,AluSx1,SINE,Alu,1,307,-5,91572465,91572776 -6 + chr14 91572940 91572972 chr14,91572940,91572972,+,(AC)n,Simple_repeat,Simple_repeat,1,32,0,91572940,91572972 -6 + chr14 91573163 91573205 chr14,91573163,91573205,-,L2a,LINE,L2,0,3426,3383,91573163,91576587 +6 - chr14 91573300 91573327 chr14,91573300,91573327,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,91573300,91573327 -6 + chr14 91575105 91575271 chr14,91575105,91575350,+,MLT1G1,LTR,ERVL-MaLR,2,252,-297,91575104,91575647 -1 + chr14 91752856 91753290 chr14,91752833,91753290,-,LTR105_Mam,LTR,ERVL,-53,547,5,91752780,91753294 +5 - chr14 91753295 91753442 chr14,91753295,91753442,+,L2a,LINE,L2,3229,3375,0,91750067,91753442 -6 + chr14 91753829 91754021 chr14,91753829,91754021,+,LTR16A2,LTR,ERVL,2,222,-273,91753828,91754294 -6 + chr14 91754021 91754283 chr14,91754021,91754283,+,MER20,DNA,hAT-Charlie,1,217,-2,91754021,91754285 -6 + chr14 91754283 91754579 chr14,91754283,91754579,+,LTR16A2,LTR,ERVL,223,495,0,91754061,91754579 -6 + chr14 91754874 91755099 chr14,91754874,91755099,+,MER20,DNA,hAT-Charlie,1,213,-6,91754874,91755105 -6 + chr14 91755109 91755249 chr14,91755109,91755249,+,L3b,LINE,CR1,5000,5140,-92,91750110,91755341 -6 + chr14 91756996 91757073 chr14,91756996,91757073,+,L3,LINE,CR1,3149,3231,-868,91753848,91757941 -6 + chr14 91757248 91757399 chr14,91757248,91757399,+,MIR3,SINE,MIR,21,206,-2,91757228,91757401 -6 + chr14 91757406 91757705 chr14,91757406,91757705,+,L3,LINE,CR1,3301,3596,-503,91754106,91758208 -6 + chr14 91757734 91758040 chr14,91757734,91758040,-,AluJo,SINE,Alu,-15,297,1,91757719,91758040 +6 - chr14 91758195 91758470 chr14,91758195,91758470,+,MLT2D,LTR,ERVL,83,358,-56,91758113,91758526 -6 + chr14 91758470 91758506 chr14,91758470,91758506,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,91758470,91758506 -6 + chr14 91759111 91759534 chr14,91759111,91759534,+,L1PB4,LINE,L1,717,1141,-6428,91758395,91765962 -6 + chr14 91759686 91759798 chr14,91759686,91760097,+,MSTA,LTR,ERVL-MaLR,1,428,0,91759686,91760097 -1 + chr14 92253493 92253537 chr14,92253317,92253537,-,L2c,LINE,L2,-1,3386,3145,92253316,92256681 +5 - chr14 92253627 92253826 chr14,92253627,92253826,+,MIRb,SINE,MIR,7,243,-25,92253621,92253851 -6 + chr14 92891588 92891626 chr14,92891588,92891626,-,L2a,LINE,L2,-10,3416,3379,92891578,92895004 -1 - chr14 92892408 92893091 chr14,92892408,92893091,+,LTR8B,LTR,ERV1,1,818,-2,92892408,92893093 +5 + chr14 92893125 92893506 chr14,92893125,92893538,+,LTR54B,LTR,ERV1,33,496,-2,92893093,92893540 +5 + chr14 92905697 92905809 chr14,92905615,92905809,+,MIRb,SINE,MIR,8,210,-58,92905608,92905867 -5 + chr14 92905842 92905975 chr14,92905842,92905975,+,MIRc,SINE,MIR,130,261,-7,92905713,92905982 -6 + chr14 92906087 92906333 chr14,92906087,92906333,+,MIRb,SINE,MIR,1,252,-16,92906087,92906349 -6 + chr14 92906505 92906619 chr14,92906505,92906619,-,MIR,SINE,MIR,-94,168,20,92906411,92906638 +6 - chr14 92907206 92907314 chr14,92907206,92907314,+,MIRc,SINE,MIR,97,200,-68,92907110,92907382 -6 + chr14 92907343 92907482 chr14,92907343,92907975,-,L1ME1,LINE,L1,-2,6177,5522,92907341,92913496 +1 - chr14 93070644 93070741 chr14,93070644,93070741,+,L2b,LINE,L2,3135,3238,-137,93067510,93070878 +6 + chr14 93071424 93072011 chr14,93071424,93072011,-,Charlie2b,DNA,hAT-Charlie,0,2782,2191,93071424,93074201 -6 - chr14 93072011 93072152 chr14,93072011,93072330,+,AluSq2,SINE,Alu,1,311,-2,93072011,93072332 +5 + chr14 93334647 93334857 chr14,93334647,93334857,+,MER8,DNA,TcMar-Tigger,1,239,0,93334647,93334857 +6 + chr14 93334858 93334961 chr14,93334858,93334961,-,CR1_Mam,LINE,CR1,-648,1556,1446,93334210,93336406 -6 - chr14 93895762 93895965 chr14,93895600,93895965,+,MLT1C,LTR,ERVL-MaLR,7,406,-61,93895594,93896026 +1 + chr14 93896279 93896365 chr14,93896279,93896365,+,MER58C,DNA,hAT-Charlie,1,75,-140,93896279,93896505 +6 + chr14 93896365 93896661 chr14,93896365,93896661,-,AluSq,SINE,Alu,-15,298,1,93896350,93896661 -6 - chr14 93896661 93896723 chr14,93896661,93896723,+,MER58C,DNA,hAT-Charlie,76,132,-83,93896586,93896806 +6 + chr14 93896725 93896817 chr14,93896725,93896817,+,GA-rich,Low_complexity,Low_complexity,1,94,0,93896725,93896817 +6 + chr14 93896817 93896918 chr14,93896817,93896918,+,MER58C,DNA,hAT-Charlie,104,215,0,93896714,93896918 +6 + chr14 93896918 93897102 chr14,93896918,93897102,+,MLT1J2,LTR,ERVL-MaLR,255,448,0,93896664,93897102 +6 + chr14 93897219 93897420 chr14,93897219,93897420,+,MLT1C,LTR,ERVL-MaLR,380,588,-7,93896840,93897427 +6 + chr14 93897681 93897759 chr14,93897681,93897986,+,L1ME4b,LINE,L1,550,843,-49,93897132,93898035 +5 + chr14 93904753 93905032 chr14,93904753,93905032,-,L1ME3G,LINE,L1,-445,479,201,93904308,93905232 +6 - chr14 93907970 93908035 chr14,93907927,93908035,-,MIRb,SINE,MIR,-125,143,34,93907802,93908068 +4 - chr14 93908063 93908105 chr14,93908063,93908105,+,MIR3,SINE,MIR,159,200,-8,93907905,93908113 -6 + chr14 93908919 93909170 chr14,93908858,93909366,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,93908858,93909366 +3 - chr14 93911514 93911564 chr14,93911410,93911564,+,MIR,SINE,MIR,14,173,-89,93911397,93911653 -4 + chr14 93911564 93911619 chr14,93911564,93911898,+,MLT2B2,LTR,ERVL,130,515,0,93911435,93911898 -2 + chr14 93922061 93922138 chr14,93922004,93922138,+,MIR3,SINE,MIR,19,148,-60,93921986,93922198 -4 + chr14 93922276 93922354 chr14,93922201,93922354,+,Charlie15b,DNA,hAT-Charlie,83,250,-811,93922119,93923165 -4 + chr14 93922364 93922381 chr14,93922364,93922407,+,Charlie15b,DNA,hAT-Charlie,685,724,-337,93921680,93922744 -2 + chr14 93923895 93924000 chr14,93923895,93924050,-,L2a,LINE,L2,-20,3406,3199,93923875,93927248 +2 - chr14 93927031 93927061 chr14,93927031,93927061,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,93927031,93927061 -6 + chr14 93944047 93944129 chr14,93944047,93944199,+,MER5B,DNA,hAT-Charlie,4,178,0,93944044,93944199 +5 + chr14 93997999 93998038 chr14,93997878,93998038,+,MIRb,SINE,MIR,15,187,-81,93997864,93998119 +2 + chr14 93999375 93999423 chr14,93999375,93999423,+,MIR,SINE,MIR,100,147,-115,93999276,93999538 +6 + chr14 94001536 94001699 chr14,94001536,94001699,+,MIRb,SINE,MIR,16,186,-82,94001521,94001781 +6 + chr14 94007011 94007124 chr14,94006812,94007124,-,AluSz,SINE,Alu,0,312,1,94006812,94007124 -2 - chr14 94007124 94007552 chr14,94007124,94007600,-,L1MB7,LINE,L1,-1007,5139,4673,94006117,94012272 -5 - chr14 94430633 94430676 chr14,94430336,94430770,-,LOR1b,LTR,ERV1,0,461,1,94430336,94430770 -1 - chr14 94431615 94431636 chr14,94431241,94431636,+,MSTA,LTR,ERVL-MaLR,1,427,-1,94431241,94431637 +2 + chr14 94431636 94431741 chr14,94431636,94433358,-,L1MC1,LINE,L1,-575,5758,4029,94431061,94437386 -4 - chr14 94464334 94464378 chr14,94464319,94464378,-,MER102c,DNA,hAT-Charlie,-259,72,15,94464060,94464392 -2 - chr14 94464597 94464682 chr14,94464597,94464682,+,MIR3,SINE,MIR,103,193,-15,94464495,94464697 +6 + chr14 94918253 94918423 chr14,94918247,94918423,+,L1ME3G,LINE,L1,687,895,-29,94917561,94918452 -5 + chr14 94960277 94960300 chr14,94960135,94960300,+,MIRb,SINE,MIR,54,258,-10,94960082,94960310 -5 + chr14 94960313 94960474 chr14,94960313,94960474,+,MIRb,SINE,MIR,79,254,-14,94960235,94960488 -6 + chr14 94962743 94962780 chr14,94962743,94962798,+,MIRc,SINE,MIR,98,154,-114,94962646,94962912 -2 + chr14 95158320 95158562 chr14,95158320,95158562,+,MER33,DNA,hAT-Charlie,1,324,0,95158320,95158562 +6 + chr14 95158691 95158990 chr14,95158691,95158990,-,AluSc,SINE,Alu,-9,300,1,95158682,95158990 -6 - chr14 95159008 95159035 chr14,95159008,95159119,-,MIR,SINE,MIR,-146,116,7,95158862,95159125 -4 - chr14 95177483 95178054 chr14,95177348,95178054,-,L1MA3,LINE,L1,0,6305,5609,95177348,95183662 -1 - chr14 95178054 95178337 chr14,95178054,95178337,-,AluSz,SINE,Alu,-23,289,1,95178031,95178337 -6 - chr14 95178337 95178625 chr14,95178337,95178625,-,L1MA3,LINE,L1,-697,5608,5322,95177640,95183946 -6 - chr14 95178626 95178696 chr14,95178626,95178696,-,MIR,SINE,MIR,-103,159,87,95178523,95178782 -6 - chr14 95179110 95179275 chr14,95179110,95179275,+,AluJo,SINE,Alu,137,302,-10,95178974,95179285 +6 + chr14 95179600 95179834 chr14,95179600,95179834,+,MLT1J,LTR,ERVL-MaLR,100,338,-174,95179501,95180008 +6 + chr14 95329584 95329631 chr14,95329425,95329631,-,L2a,LINE,L2,-1,3425,3224,95329424,95332854 -1 - chr14 95332645 95332784 chr14,95332632,95332804,-,L2a,LINE,L2,-5,3421,3224,95332627,95336027 -3 - chr14 95334294 95334391 chr14,95334294,95334391,+,MIRb,SINE,MIR,35,150,-118,95334260,95334509 +6 + chr14 95334656 95334712 chr14,95334656,95334712,-,MIRc,SINE,MIR,-107,161,105,95334549,95334816 -6 - chr14 95335147 95335275 chr14,95335147,95335275,-,MIRb,SINE,MIR,-135,133,4,95335012,95335278 -6 - chr14 95516136 95516155 chr14,95515998,95516155,-,MIRc,SINE,MIR,-49,159,8,95515949,95516162 -1 - chr14 95517329 95517506 chr14,95517329,95517506,+,L2b,LINE,L2,2929,3107,-280,95514401,95517786 +6 + chr14 95532437 95532822 chr14,95532437,95532822,+,MER65A,LTR,ERV1,52,445,0,95532386,95532822 -5 + chr14 95533693 95533745 chr14,95533661,95533745,-,L2a,LINE,L2,0,3426,3338,95533661,95537082 +4 - chr14 95533945 95534006 chr14,95533945,95534006,+,L2b,LINE,L2,3314,3375,0,95530632,95534006 -6 + chr14 95534100 95534208 chr14,95534100,95534208,+,AluJr,SINE,Alu,1,108,-204,95534100,95534412 -6 + chr14 95534245 95534269 chr14,95534245,95534269,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,95534245,95534269 -6 + chr14 95573562 95573684 chr14,95573286,95573852,-,MER50,LTR,ERV1,-166,568,3,95573120,95573854 -1 - chr14 95577429 95577486 chr14,95576893,95577486,-,MER51B,LTR,ERV1,0,634,1,95576893,95577486 -2 - chr14 95577681 95577800 chr14,95577681,95577800,+,LTR81B,LTR,Gypsy,1274,1388,-5,95576408,95577805 +6 + chr14 95577807 95577873 chr14,95577807,95577873,-,MIRb,SINE,MIR,-8,260,195,95577799,95578067 -6 - chr14 95577932 95577946 chr14,95577932,95577946,-,MIRb,SINE,MIR,-76,192,181,95577856,95578126 -6 - chr14 95577946 95578411 chr14,95577946,95578411,+,PrimLTR79,LTR,ERV1,1,503,0,95577946,95578411 +6 + chr14 95578411 95578523 chr14,95578411,95578523,-,MIRb,SINE,MIR,-88,180,60,95578323,95578582 -6 - chr14 95578557 95578684 chr14,95578557,95578789,-,Kanga1a,DNA,TcMar-Tc2,-35,719,488,95578522,95579276 -5 - chr14 95580768 95580821 chr14,95580698,95580867,-,MIRc,SINE,MIR,-62,206,21,95580636,95580887 -3 - chr14 95581877 95581956 chr14,95581877,95582039,+,L2b,LINE,L2,3189,3371,-4,95578689,95582043 +5 + chr14 95639953 95640088 chr14,95639903,95640088,-,MIR3,SINE,MIR,-24,184,5,95639879,95640092 -2 - chr14 95642336 95642444 chr14,95642336,95642444,+,L2b,LINE,L2,3311,3426,0,95639026,95642444 +6 + chr14 95643066 95643244 chr14,95643066,95643244,-,MIRb,SINE,MIR,-13,249,42,95643053,95643285 -6 - chr14 95643244 95643285 chr14,95643244,95643749,+,MLT2B2,LTR,ERVL,9,514,-1,95643236,95643750 +5 + chr14 95644732 95644808 chr14,95644732,95644808,+,(AC)n,Simple_repeat,Simple_repeat,1,76,0,95644732,95644808 +6 + chr14 95645153 95645232 chr14,95645153,95645363,+,MER58A,DNA,hAT-Charlie,1,213,-11,95645153,95645374 +5 + chr14 95650498 95650888 chr14,95650407,95650888,+,LTR12C,LTR,ERV1,1098,1579,0,95649310,95650888 +1 + chr14 95651529 95651565 chr14,95651529,95651565,-,LTR24C,LTR,ERV1,0,635,600,95651529,95652164 -6 - chr14 95651644 95651754 chr14,95651644,95651754,-,AluJo,SINE,Alu,-203,109,1,95651441,95651754 -6 - chr14 95651754 95652226 chr14,95651754,95652375,-,LTR24C,LTR,ERV1,-26,609,1,95651728,95652375 -4 - chr14 95654509 95654647 chr14,95654480,95654783,-,AluJb,SINE,Alu,-4,308,1,95654476,95654783 -5 - chr14 95662616 95662664 chr14,95662616,95662797,-,MIRb,SINE,MIR,-42,226,38,95662574,95662834 -4 - chr14 95663256 95663327 chr14,95662848,95663327,+,MER4C,LTR,ERV1,3,465,0,95662846,95663327 +1 + chr14 95663367 95663542 chr14,95663367,95663542,-,MIR3,SINE,MIR,-11,197,2,95663356,95663543 -6 - chr14 95663865 95664162 chr14,95663865,95664162,-,AluSx1,SINE,Alu,-13,299,1,95663852,95664162 -6 - chr14 95664736 95664975 chr14,95664736,95664975,-,MLT1H,LTR,ERVL-MaLR,-3,546,275,95664733,95665249 -1 - chr14 95664977 95665014 chr14,95664977,95665014,-,MIRb,SINE,MIR,-199,69,31,95664778,95665044 -6 - chr14 95668533 95668588 chr14,95668533,95668588,+,L2c,LINE,L2,3330,3385,-2,95665204,95668590 +6 + chr14 95668621 95668738 chr14,95668621,95668738,-,MIR1_Amn,SINE,MIR,-112,118,2,95668509,95668739 -6 - chr14 95669358 95669381 chr14,95669358,95669381,+,(AAAT)n,Simple_repeat,Simple_repeat,1,23,0,95669358,95669381 +6 + chr14 95669381 95669528 chr14,95669381,95669528,-,AluSc5,SINE,Alu,-162,147,1,95669219,95669528 -1 - chr14 95669528 95669657 chr14,95669528,95669657,-,MLT1F2,LTR,ERVL-MaLR,-427,133,1,95669101,95669657 -6 - chr14 95669662 95669998 chr14,95669662,95669998,+,L2b,LINE,L2,2968,3375,0,95666695,95669998 +6 + chr14 95671331 95671448 chr14,95670726,95671448,+,L2a,LINE,L2,2574,3425,-1,95668153,95671449 +2 + chr14 95671971 95672085 chr14,95671960,95672085,-,AluJo,SINE,Alu,-187,125,1,95671773,95672085 -2 - chr14 95672516 95672629 chr14,95672516,95672629,-,MIRb,SINE,MIR,-130,138,25,95672386,95672653 -6 - chr14 95672690 95672755 chr14,95672690,95672755,-,L2c,LINE,L2,-17,3370,3302,95672673,95676056 -6 - chr14 95672850 95672900 chr14,95672850,95672900,+,(TGTGTA)n,Simple_repeat,Simple_repeat,1,51,0,95672850,95672900 +6 + chr14 95676450 95677024 chr14,95676272,95677024,+,LTR1B,LTR,ERV1,1,824,0,95676272,95677024 +2 + chr14 95679072 95679229 chr14,95678971,95679229,+,L2,LINE,L2,1501,1814,-1605,95677471,95680834 +2 + chr14 95679255 95679294 chr14,95679255,95679294,+,L1MEg2,LINE,L1,15,53,-6399,95679241,95685693 +6 + chr14 95679294 95679833 chr14,95679294,95679915,+,MER41B,LTR,ERV1,3,634,0,95679292,95679915 +5 + chr14 95688179 95688274 chr14,95688004,95688294,-,AluSz,SINE,Alu,-16,296,1,95687988,95688294 -3 - chr14 95717471 95717568 chr14,95717419,95717724,-,AluSp,SINE,Alu,-7,306,1,95717412,95717724 -3 - chr14 95755247 95755438 chr14,95755247,95755438,+,AluSc,SINE,Alu,119,309,0,95755129,95755438 +6 + chr14 95755439 95755574 chr14,95755439,95755574,-,MIR,SINE,MIR,-131,137,10,95755308,95755583 -6 - chr14 95755773 95755987 chr14,95755773,95755987,-,MIR,SINE,MIR,-14,254,36,95755759,95756022 -6 - chr14 95756074 95756442 chr14,95756074,95756442,-,LTR79,LTR,ERVL,-120,407,26,95755954,95756467 -6 - chr14 95756503 95756809 chr14,95756503,95756809,+,AluSx3,SINE,Alu,1,305,-6,95756503,95756815 +6 + chr14 95757272 95757656 chr14,95757272,95757747,+,MER39,LTR,ERV1,6,639,-68,95757267,95757815 +5 + chr14 95855602 95855721 chr14,95855602,95855721,-,MLT1K,LTR,ERVL-MaLR,-131,464,347,95855471,95856067 +6 - chr14 95855828 95855977 chr14,95855828,95856163,+,AluJr,SINE,Alu,1,300,-12,95855828,95856175 -2 + chr14 95866046 95866464 chr14,95866046,95866596,+,MLT1F2,LTR,ERVL-MaLR,1,557,-3,95866046,95866599 -1 + chr14 95877088 95877143 chr14,95877088,95877143,+,(CTCCGG)n,Simple_repeat,Simple_repeat,1,56,0,95877088,95877143 +6 + chr14 95895811 95895943 chr14,95895652,95896054,+,L2a,LINE,L2,2916,3426,0,95892737,95896054 +3 + chr14 95923722 95923750 chr14,95923722,95923750,+,(TC)n,Simple_repeat,Simple_repeat,1,29,0,95923722,95923750 +6 + chr14 95924476 95924813 chr14,95924476,95924813,-,THE1B,LTR,ERVL-MaLR,0,364,1,95924476,95924813 -6 - chr14 95924813 95925005 chr14,95924813,95925005,+,MamTip2,DNA,hAT-Tip100,6,206,-99,95924808,95925104 +6 + chr14 95925075 95925286 chr14,95925075,95925286,-,MIRb,SINE,MIR,-23,245,31,95925052,95925316 -6 - chr14 96087499 96087670 chr14,96087499,96087670,-,MIR3,SINE,MIR,-33,175,2,96087466,96087671 -6 - chr14 96089277 96089496 chr14,96089277,96089496,-,MIRb,SINE,MIR,-32,236,1,96089245,96089496 -6 - chr14 96090118 96090420 chr14,96090118,96090420,+,AluSg,SINE,Alu,1,310,0,96090118,96090420 +6 + chr14 96090432 96090521 chr14,96090432,96090521,+,L3,LINE,CR1,3938,4026,-73,96086495,96090594 +6 + chr14 96091001 96091198 chr14,96091001,96091198,-,MIRb,SINE,MIR,-63,205,1,96090938,96091198 -6 - chr14 96091336 96091413 chr14,96091336,96091413,-,MIR3,SINE,MIR,-15,193,117,96091321,96091529 -6 - chr14 96092021 96092180 chr14,96092021,96092180,+,MamRep564,Unknown,Unknown,71,239,-118,96091951,96092298 +6 + chr14 96092576 96092760 chr14,96092576,96092760,-,MIR3,SINE,MIR,-32,236,34,96092544,96092793 -6 - chr14 96092796 96093001 chr14,96092796,96093001,+,MER20,DNA,hAT-Charlie,1,219,0,96092796,96093001 +6 + chr14 96093936 96094080 chr14,96093936,96094209,+,L2b,LINE,L2,3100,3375,0,96090837,96094209 +5 + chr14 96214771 96214818 chr14,96214771,96214932,+,L1M6,LINE,L1,1515,1650,-4846,96213257,96219778 +5 + chr14 96233535 96233623 chr14,96233535,96233623,-,MER34,LTR,ERV1,-446,96,9,96233089,96233631 +6 - chr14 96233727 96233788 chr14,96233727,96233788,-,MamTip2,DNA,hAT-Tip100,-125,180,127,96233602,96233914 +6 - chr14 96233997 96234050 chr14,96233997,96234050,-,MIR3,SINE,MIR,-52,156,104,96233945,96234153 +6 - chr14 96259411 96259892 chr14,96258822,96260025,-,BLACKJACK,DNA,hAT-Blackjack,-668,2301,993,96258154,96261017 +5 - chr14 96275046 96275220 chr14,96274954,96275220,-,MER96B,DNA,hAT-Tip100,-136,281,1,96274818,96275220 +5 - chr14 96275893 96276016 chr14,96275893,96276016,+,L1ME4b,LINE,L1,288,410,-482,96275606,96276498 -6 + chr14 96500810 96500845 chr14,96500809,96500845,+,(T)n,Simple_repeat,Simple_repeat,1,36,0,96500809,96500845 -5 + chr14 96500845 96500969 chr14,96500845,96500969,-,AluJb,SINE,Alu,-185,127,2,96500660,96500970 +6 - chr14 96500969 96501168 chr14,96500969,96501168,-,MER33,DNA,hAT-Charlie,-110,214,1,96500859,96501168 +6 - chr14 96501686 96501796 chr14,96501686,96501796,-,L2c,LINE,L2,0,3426,3294,96501686,96505089 +6 - chr14 96593821 96594075 chr14,96593821,96594075,+,MER96B,DNA,hAT-Tip100,1,260,-157,96593821,96594232 +6 + chr14 96594075 96594386 chr14,96594075,96594386,+,AluYm1,SINE,Alu,1,310,-1,96594075,96594387 +6 + chr14 96594386 96594508 chr14,96594386,96594508,+,MER96B,DNA,hAT-Tip100,261,410,-7,96594126,96594515 +6 + chr14 96594560 96594686 chr14,96594560,96594686,+,LTR85b,LTR,Gypsy?,412,545,-239,96594149,96594925 +6 + chr14 96595343 96595533 chr14,96595343,96595533,-,Tigger20a,DNA,TcMar-Tigger,-109,864,676,96595234,96596208 -6 - chr14 96595553 96595639 chr14,96595553,96595639,-,MER2,DNA,TcMar-Tigger,0,345,253,96595553,96595891 -6 - chr14 96595639 96595762 chr14,96595639,96595928,+,AluJr,SINE,Alu,1,298,-14,96595639,96595942 +5 + chr14 96753269 96753326 chr14,96752971,96753486,+,MER1A,DNA,hAT-Charlie,1,529,0,96752971,96753486 +3 + chr14 96790532 96790613 chr14,96790532,96790695,-,MER104,DNA,TcMar-Tc2,-4,177,8,96790528,96790702 -5 - chr14 96931367 96931391 chr14,96931234,96931391,-,MamRep605,LTR?,LTR?,-237,612,451,96930997,96931841 -1 - chr14 96931467 96931538 chr14,96931467,96931538,-,L2c,LINE,L2,0,3387,3300,96931467,96934837 -6 - chr14 96992865 96992949 chr14,96992865,96992949,+,MIR3,SINE,MIR,69,152,-78,96992797,96993027 +6 + chr14 96992951 96993097 chr14,96992951,96993097,+,MLT1J2,LTR,ERVL-MaLR,3,156,-292,96992949,96993389 +6 + chr14 96993194 96993271 chr14,96993194,96993271,+,MLT1J2,LTR,ERVL-MaLR,252,338,-73,96992943,96993344 +6 + chr14 96993846 96993922 chr14,96993846,96993922,-,AluJb,SINE,Alu,-235,77,2,96993611,96993923 -6 - chr14 96994307 96994475 chr14,96994307,96994475,+,MIRb,SINE,MIR,7,156,-112,96994301,96994587 +6 + chr14 96994561 96994662 chr14,96994561,96994662,-,MIRb,SINE,MIR,-8,260,160,96994553,96994821 -6 - chr14 96994719 96994749 chr14,96994719,96994749,+,(ATTC)n,Simple_repeat,Simple_repeat,1,30,0,96994719,96994749 +6 + chr14 96994751 96995073 chr14,96994751,96995073,-,L2c,LINE,L2,0,3387,3023,96994751,96998095 -6 - chr14 96995277 96995466 chr14,96995277,96995466,+,MIRb,SINE,MIR,48,252,-16,96995230,96995482 +6 + chr14 97110506 97110862 chr14,97110506,97110936,-,MLT1C,LTR,ERVL-MaLR,-3,464,1,97110503,97110936 +2 - chr14 97112011 97112030 chr14,97111893,97112030,+,MER5A,DNA,hAT-Charlie,56,188,-1,97111838,97112031 -4 + chr14 97116355 97116444 chr14,97116168,97116444,-,L2b,LINE,L2,0,3375,3102,97116168,97119545 -1 - chr14 97117742 97117832 chr14,97117735,97117832,-,LTR16C,LTR,ERVL,-2,487,369,97117733,97118200 +5 - chr14 97118122 97118186 chr14,97118122,97118186,+,MIRc,SINE,MIR,104,169,-99,97118019,97118285 -6 + chr14 97118529 97118541 chr14,97118529,97118662,+,MamGypLTR2b,LTR,Gypsy,11,148,-774,97118519,97119436 +4 + chr14 97119071 97119247 chr14,97119000,97119503,-,MLT1D,LTR,ERVL-MaLR,0,505,6,97119000,97119508 +1 - chr14 97121245 97121375 chr14,97120904,97121375,-,LTR33B,LTR,ERVL,0,503,30,97120904,97121404 -2 - chr14 97121490 97121501 chr14,97121490,97121921,-,Kanga2_a,DNA,TcMar-Tc2,-4,884,376,97121486,97122296 -5 - chr14 97458843 97458927 chr14,97458843,97459078,-,UCON31,Unknown,Unknown,-96,358,126,97458747,97459203 -1 - chr14 97461804 97461913 chr14,97461781,97461913,-,MIRb,SINE,MIR,-107,161,25,97461674,97461937 -2 - chr14 97461923 97462332 chr14,97461923,97462390,+,MLT1H1,LTR,ERVL-MaLR,4,586,-9,97461920,97462399 +4 + chr14 97466496 97466618 chr14,97466420,97466858,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,97466420,97466858 +3 + chr14 97510255 97510365 chr14,97510020,97510558,-,L1MD3,LINE,L1,-2,7993,7441,97510018,97517998 -3 - chr14 97581474 97581500 chr14,97581474,97581500,+,(TG)n,Simple_repeat,Simple_repeat,1,26,0,97581474,97581500 +6 + chr14 97632647 97632992 chr14,97632421,97632992,+,L1ME4a,LINE,L1,5448,6072,-52,97626974,97633044 -5 + chr14 97633049 97633084 chr14,97633049,97633084,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,97633049,97633084 -6 + chr14 97633096 97633126 chr14,97633096,97633126,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,97633096,97633126 -6 + chr14 97646063 97646195 chr14,97646063,97646195,+,MIRb,SINE,MIR,103,253,-9,97645961,97646204 -6 + chr14 97673390 97673412 chr14,97673390,97673412,+,(GAA)n,Simple_repeat,Simple_repeat,1,22,0,97673390,97673412 -6 + chr14 97686359 97686658 chr14,97686278,97686684,-,MSTC,LTR,ERVL-MaLR,0,428,2,97686278,97686685 +1 - chr14 97749763 97750007 chr14,97749763,97750007,-,MIR,SINE,MIR,-15,247,1,97749748,97750007 +6 - chr14 97750020 97750099 chr14,97750020,97750099,-,MER5B,DNA,hAT-Charlie,-82,96,19,97749938,97750117 +6 - chr14 97750786 97750896 chr14,97750786,97750896,-,MER91C,DNA,hAT-Tip100,0,140,2,97750786,97750897 +6 - chr14 97751143 97751975 chr14,97751143,97752117,-,MER45B,DNA,hAT-Tip100,0,1040,5,97751143,97752121 +5 - chr14 97762501 97762831 chr14,97762501,97763033,+,LTR33A_,LTR,ERVL,25,520,0,97762477,97763033 -1 + chr14 97786565 97786848 chr14,97785017,97787397,+,Tigger1,DNA,TcMar-Tigger,1,2418,0,97785017,97787397 -5 + chr14 97789002 97789075 chr14,97788873,97789075,-,MIR,SINE,MIR,-40,222,7,97788833,97789081 +4 - chr14 97789167 97789214 chr14,97789167,97789214,-,L2a,LINE,L2,0,3426,3380,97789167,97792593 +6 - chr14 97925613 97925906 chr14,97925613,97925906,-,AluSc,SINE,Alu,-6,303,1,97925607,97925906 +6 - chr14 97925906 97926143 chr14,97925906,97926143,+,L2c,LINE,L2,3147,3387,0,97922760,97926143 -6 + chr14 97926511 97926644 chr14,97926511,97926730,+,MIR,SINE,MIR,1,225,-43,97926511,97926773 -2 + chr14 97933062 97933358 chr14,97933050,97933358,-,AluY,SINE,Alu,0,311,2,97933050,97933359 +5 - chr14 97934451 97934881 chr14,97934451,97934955,+,MLT1D,LTR,ERVL-MaLR,1,505,0,97934451,97934955 -2 + chr14 97958030 97958341 chr14,97958030,97958341,-,AluJr,SINE,Alu,0,312,1,97958030,97958341 +5 - chr14 97958434 97958547 chr14,97958434,97958547,-,MER81,DNA,hAT-Blackjack,0,114,5,97958434,97958551 +6 - chr14 97958567 97959034 chr14,97958567,97959034,+,MLT1D,LTR,ERVL-MaLR,1,505,0,97958567,97959034 -6 + chr14 97959216 97959331 chr14,97959216,97959331,+,MIRc,SINE,MIR,25,146,-122,97959192,97959453 -6 + chr14 97959431 97959655 chr14,97959431,97959655,+,MER106A,DNA,hAT-Charlie,2,235,-1,97959430,97959656 -6 + chr14 97968842 97969015 chr14,97968761,97969045,+,AluSx,SINE,Alu,25,309,-3,97968737,97969048 -5 + chr14 98139216 98139242 chr14,98139216,98139294,+,MIR3,SINE,MIR,110,187,-21,98139107,98139315 +5 + chr14 98514746 98514798 chr14,98514746,98514947,-,MER20,DNA,hAT-Charlie,-4,215,1,98514742,98514947 -5 - chr14 98925137 98925342 chr14,98925039,98925342,+,AluSx,SINE,Alu,4,303,-9,98925036,98925351 -5 + chr14 98925552 98925678 chr14,98925552,98925678,+,MIR3,SINE,MIR,30,154,-54,98925523,98925732 -6 + chr14 98925876 98926085 chr14,98925876,98926085,+,MIR3,SINE,MIR,5,207,-1,98925872,98926086 -6 + chr14 98926199 98926222 chr14,98926199,98926222,+,(TTG)n,Simple_repeat,Simple_repeat,1,23,0,98926199,98926222 -6 + chr14 98927606 98927805 chr14,98927606,98927823,-,MIRb,SINE,MIR,-16,252,20,98927590,98927842 +1 - chr14 99158416 99158546 chr14,99158390,99158564,-,MIR,SINE,MIR,-41,221,31,99158349,99158594 -1 - chr14 99159270 99159449 chr14,99159270,99159449,-,MIRb,SINE,MIR,-66,202,4,99159204,99159452 -6 - chr14 99159636 99159669 chr14,99159636,99159764,+,MER5A,DNA,hAT-Charlie,37,161,-28,99159600,99159792 +5 + chr14 99513335 99513428 chr14,99513297,99513428,-,L3,LINE,CR1,-15,4084,3948,99513282,99517375 -2 - chr14 99625256 99625393 chr14,99625256,99625393,-,MIR,SINE,MIR,-118,144,2,99625138,99625394 -6 - chr14 99691460 99691660 chr14,99691460,99691660,-,MIRc,SINE,MIR,-32,236,22,99691428,99691681 +6 - chr14 99693619 99693648 chr14,99693425,99693814,-,L1MEc,LINE,L1,-2275,4731,4333,99691150,99698146 +1 - chr14 99977394 99977439 chr14,99977394,99977733,-,AluSx3,SINE,Alu,-8,303,1,99977386,99977733 +2 - chr14 99978038 99978098 chr14,99977813,99978113,+,AluSx1,SINE,Alu,1,299,-13,99977813,99978126 -1 + chr14 100052807 100052988 chr14,100052807,100053194,-,MLT1A,LTR,ERVL-MaLR,0,374,1,100052807,100053194 +2 - chr14 100207407 100207652 chr14,100207326,100208697,-,LTR12C,LTR,ERV1,0,1579,3,100207326,100208699 +5 - chr14 100263887 100264164 chr14,100263887,100264164,-,AluJr,SINE,Alu,-35,277,1,100263852,100264164 -6 - chr14 100264170 100264221 chr14,100264170,100264470,-,AluSz,SINE,Alu,-5,307,2,100264165,100264471 -4 - chr14 100265314 100265405 chr14,100265097,100265414,+,AluSq2,SINE,Alu,3,306,-7,100265095,100265421 +5 + chr14 100291489 100291520 chr14,100291489,100291554,-,MIR1_Amn,SINE,MIR,-46,162,94,100291443,100291647 -4 - chr14 100294560 100294620 chr14,100294560,100294620,-,MIRc,SINE,MIR,-114,154,93,100294446,100294712 -6 - chr14 100340013 100340080 chr14,100340013,100340131,-,MIRb,SINE,MIR,-74,194,67,100339939,100340197 -4 - chr14 100340480 100340554 chr14,100340480,100340659,-,AluJo,SINE,Alu,-12,300,121,100340468,100340779 -5 - chr14 100353992 100354025 chr14,100353992,100354025,+,(AATTTG)n,Simple_repeat,Simple_repeat,1,34,0,100353992,100354025 +6 + chr14 100354025 100354061 chr14,100354025,100354277,-,MIRb,SINE,MIR,0,268,2,100354025,100354278 -5 - chr14 100406599 100406624 chr14,100406585,100406624,-,MIR,SINE,MIR,-166,96,58,100406419,100406681 -1 - chr14 100406705 100406763 chr14,100406705,100406803,+,L2c,LINE,L2,3281,3387,0,100403425,100406803 +4 + chr14 100406916 100406948 chr14,100406916,100406948,+,(CCTT)n,Simple_repeat,Simple_repeat,1,33,0,100406916,100406948 +6 + chr14 100538939 100538956 chr14,100538919,100538956,+,(GGCCTC)n,Simple_repeat,Simple_repeat,1,37,0,100538919,100538956 +1 + chr14 100587793 100587927 chr14,100587793,100587927,-,L2a,LINE,L2,0,3426,3292,100587793,100591218 +6 - chr14 100587907 100587943 chr14,100587907,100587943,-,MIRc,SINE,MIR,-122,146,111,100587785,100588053 +6 - chr14 100589295 100589326 chr14,100589295,100589331,+,G-rich,Low_complexity,Low_complexity,1,36,0,100589295,100589331 -1 + chr14 100657968 100658105 chr14,100657968,100658284,-,L2c,LINE,L2,0,3387,3024,100657968,100661307 -4 - chr14 100663241 100663278 chr14,100663241,100663423,-,MIR,SINE,MIR,-4,258,74,100663237,100663496 -4 - chr14 100663369 100663423 chr14,100663241,100663423,-,MIR,SINE,MIR,-4,258,74,100663237,100663496 -2 - chr14 100663497 100663646 chr14,100663497,100663776,-,MER33,DNA,hAT-Charlie,0,324,1,100663497,100663776 -5 - chr14 100667290 100667372 chr14,100667290,100667372,-,MIRb,SINE,MIR,-90,178,96,100667200,100667467 -6 - chr14 100669322 100669446 chr14,100669322,100669472,-,L2c,LINE,L2,-214,3173,3014,100669108,100672485 -4 - chr14 100671574 100671694 chr14,100671574,100671694,+,MIR3,SINE,MIR,81,195,-13,100671494,100671707 +6 + chr14 100671679 100671784 chr14,100671679,100671784,-,MIRb,SINE,MIR,-7,261,154,100671672,100671937 -6 - chr14 100671793 100672143 chr14,100671793,100672143,-,L2a,LINE,L2,-11,3415,3025,100671782,100675167 -6 - chr14 100672173 100672264 chr14,100672173,100672264,+,LTR67B,LTR,ERVL,33,130,-490,100672141,100672754 +6 + chr14 100672643 100672775 chr14,100672643,100672803,+,LTR16C,LTR,ERVL,303,471,-18,100672341,100672821 +5 + chr14 100676427 100676548 chr14,100676427,100676605,+,L2b,LINE,L2,3088,3259,-116,100673340,100676721 -2 + chr14 100829465 100829630 chr14,100829465,100829630,+,MIRb,SINE,MIR,82,254,-14,100829384,100829644 +1 + chr14 100829596 100829639 chr14,100829596,100829639,+,L2b,LINE,L2,3324,3366,-9,100826273,100829648 +1 + chr14 100830216 100830344 chr14,100830216,100830344,+,MIRc,SINE,MIR,34,155,-113,100830183,100830457 +6 + chr14 100830344 100830384 chr14,100830344,100830384,+,(AC)n,Simple_repeat,Simple_repeat,1,40,0,100830344,100830384 +6 + chr14 100830384 100830484 chr14,100830384,100830484,+,MIRc,SINE,MIR,156,248,-20,100830229,100830504 +6 + chr14 100830607 100830697 chr14,100830607,100830697,-,L2c,LINE,L2,-4,3383,3305,100830603,100834001 -6 - chr14 100831360 100831580 chr14,100831360,100831580,+,L2b,LINE,L2,1817,2050,-1369,100829544,100832949 +1 + chr14 100831770 100831895 chr14,100831770,100831895,+,MIRb,SINE,MIR,41,174,-94,100831730,100831989 +6 + chr14 100833266 100833557 chr14,100833266,100833557,-,AluSg7,SINE,Alu,-19,290,1,100833247,100833557 -1 - chr14 100834648 100834738 chr14,100834648,100834738,+,L2b,LINE,L2,3282,3368,-7,100831367,100834745 +6 + chr14 100845751 100845898 chr14,100845751,100845898,-,X6A_LINE,LINE,CR1,-171,909,770,100845580,100846667 -6 - chr14 100846599 100846671 chr14,100846599,100846671,+,(AATA)n,Simple_repeat,Simple_repeat,1,73,0,100846599,100846671 +6 + chr14 100847001 100847040 chr14,100847001,100847040,+,A-rich,Low_complexity,Low_complexity,1,39,0,100847001,100847040 +6 + chr14 100847264 100847297 chr14,100847264,100847297,+,(ATAA)n,Simple_repeat,Simple_repeat,1,33,0,100847264,100847297 +6 + chr14 100847922 100847962 chr14,100847922,100847962,+,GA-rich,Low_complexity,Low_complexity,1,40,0,100847922,100847962 +6 + chr14 100848065 100848098 chr14,100848065,100848098,+,(AG)n,Simple_repeat,Simple_repeat,1,33,0,100848065,100848098 +6 + chr14 100848415 100848464 chr14,100848415,100848464,+,(GAAT)n,Simple_repeat,Simple_repeat,1,50,0,100848415,100848464 +6 + chr14 100848543 100848644 chr14,100848543,100848644,+,A-rich,Low_complexity,Low_complexity,1,100,0,100848543,100848644 +6 + chr14 100849135 100849159 chr14,100849135,100849159,+,(AATA)n,Simple_repeat,Simple_repeat,1,24,0,100849135,100849159 +6 + chr14 100849279 100849392 chr14,100849279,100849392,+,L1ME5,LINE,L1,6080,6194,0,100843200,100849392 +6 + chr14 100849399 100849446 chr14,100849399,100849446,+,(AATG)n,Simple_repeat,Simple_repeat,1,47,0,100849399,100849446 +6 + chr14 100849758 100849799 chr14,100849758,100849804,+,A-rich,Low_complexity,Low_complexity,1,48,0,100849758,100849804 +5 + chr14 100857301 100857381 chr14,100857301,100857381,+,MIRb,SINE,MIR,110,186,-82,100857192,100857463 +6 + chr14 100858050 100858141 chr14,100858050,100858141,-,MIRb,SINE,MIR,-155,113,14,100857895,100858154 -6 - chr14 100859085 100859165 chr14,100859085,100859165,+,OldhAT1,DNA,hAT-Ac,289,369,-2479,100858797,100861644 +6 + chr14 100859743 100859802 chr14,100859743,100859802,+,MIRc,SINE,MIR,98,154,-114,100859646,100859916 +6 + chr14 100859882 100860045 chr14,100859882,100860045,+,MIRb,SINE,MIR,51,246,-22,100859832,100860067 +6 + chr14 100860811 100861006 chr14,100860811,100861006,+,MIRb,SINE,MIR,33,254,-14,100860779,100861020 +5 + chr14 100860884 100861006 chr14,100860811,100861006,+,MIRb,SINE,MIR,33,254,-14,100860779,100861020 -5 + chr14 100897593 100897706 chr14,100897331,100897706,-,L1ME3G,LINE,L1,-14,910,507,100897317,100898212 -2 - chr14 100897949 100897994 chr14,100897872,100897994,+,L1ME5,LINE,L1,6065,6179,-15,100891808,100898009 +1 + chr14 100898020 100898053 chr14,100898020,100898098,-,L1MC,LINE,L1,-2059,5823,5743,100895961,100903840 -4 - chr14 100906044 100906123 chr14,100905713,100906123,-,L1MC5,LINE,L1,-14,9290,8917,100905699,100915039 -1 - chr14 100906936 100907021 chr14,100906842,100907021,-,MIRb,SINE,MIR,-14,254,41,100906828,100907061 -5 - chr14 100910233 100910300 chr14,100910200,100910300,+,MIRc,SINE,MIR,148,234,-34,100910053,100910334 +2 + chr14 100914672 100914972 chr14,100914604,100915346,+,MER54A,LTR,ERVL,1,901,0,100914604,100915346 +5 + chr14 100945147 100945160 chr14,100945147,100945354,-,MER3,DNA,hAT-Charlie,0,209,2,100945147,100945355 -5 - chr14 100959923 100960199 chr14,100959923,100960204,+,AluSp,SINE,Alu,21,313,0,100959903,100960204 +5 + chr14 100960509 100960609 chr14,100960307,100960609,+,MER54A,LTR,ERVL,460,769,-132,100959848,100960741 +1 + chr14 100960885 100961088 chr14,100960885,100961088,-,MER5A,DNA,hAT-Charlie,-1,188,1,100960884,100961088 -1 - chr14 100961171 100961210 chr14,100961171,100961210,+,(TAAT)n,Simple_repeat,Simple_repeat,1,39,0,100961171,100961210 +6 + chr14 100961210 100961244 chr14,100961210,100961499,-,AluSz,SINE,Alu,-27,285,1,100961183,100961499 -4 - chr14 100965680 100965766 chr14,100965467,100965766,+,AluSx1,SINE,Alu,1,299,-13,100965467,100965779 +5 + chr14 100987219 100987255 chr14,100987219,100987255,+,(AATA)n,Simple_repeat,Simple_repeat,1,37,0,100987219,100987255 +6 + chr14 101070442 101070490 chr14,101070425,101070490,+,L2c,LINE,L2,3323,3387,0,101067103,101070490 +1 + chr14 101070833 101070882 chr14,101070833,101070882,+,L2c,LINE,L2,3115,3162,-225,101067719,101071107 +6 + chr14 101070851 101071067 chr14,101070851,101071067,+,L2b,LINE,L2,3129,3364,-11,101067723,101071078 +6 + chr14 101074042 101074108 chr14,101074042,101074108,+,MIRc,SINE,MIR,31,96,-172,101074012,101074280 -6 + chr14 101120856 101120905 chr14,101120596,101120905,-,MLT1J2,LTR,ERVL-MaLR,-28,420,74,101120568,101120978 -1 - chr14 101123090 101123489 chr14,101123090,101123489,+,L1ME3,LINE,L1,5747,6168,-5,101117344,101123494 +6 + chr14 101257332 101257688 chr14,101257276,101257688,+,MLT1E3,LTR,ERVL-MaLR,1,485,-195,101257276,101257883 +1 + chr14 101257799 101257831 chr14,101257799,101259086,-,L1ME3Cz,LINE,L1,-1393,4753,3496,101256406,101262581 -4 - chr14 101276329 101276498 chr14,101276196,101276498,-,L1MEf,LINE,L1,-1473,1279,1072,101274723,101277569 -2 - chr14 101276583 101277060 chr14,101276583,101277060,+,L1M4a1,LINE,L1,1615,2128,-451,101274969,101277511 +6 + chr14 101277046 101277223 chr14,101277046,101277223,+,L1ME1,LINE,L1,5,185,-6448,101277042,101283671 +6 + chr14 101277232 101278318 chr14,101277232,101278661,+,L1ME1,LINE,L1,74,1636,-4997,101277159,101283658 +5 + chr14 101332548 101332589 chr14,101332548,101332589,-,L4_A_Mam,LINE,RTE-X,0,4990,4948,101332548,101337536 +6 - chr14 101332778 101332814 chr14,101332778,101332814,+,(TGA)n,Simple_repeat,Simple_repeat,1,36,0,101332778,101332814 -6 + chr14 101334258 101334296 chr14,101334258,101334296,-,MIR1_Amn,SINE,MIR,-93,137,100,101334165,101334395 +6 - chr14 101552346 101552409 chr14,101552346,101552409,-,MIR3,SINE,MIR,-139,129,65,101552207,101552473 +6 - chr14 101552827 101552972 chr14,101552827,101552972,-,MIRb,SINE,MIR,-83,185,39,101552744,101553010 +6 - chr14 101553277 101553423 chr14,101553277,101553423,+,L2,LINE,L2,2367,2509,-910,101550911,101554333 -6 + chr14 101553559 101553685 chr14,101553559,101553685,+,MIRc,SINE,MIR,53,182,-86,101553507,101553771 -6 + chr14 101553849 101554242 chr14,101553849,101554260,+,MLT1K,LTR,ERVL-MaLR,215,591,-4,101553635,101554264 -2 + chr14 101557545 101557579 chr14,101557545,101557579,+,GA-rich,Low_complexity,Low_complexity,1,37,0,101557545,101557579 -6 + chr14 101558886 101558942 chr14,101558886,101558942,+,(CA)n,Simple_repeat,Simple_repeat,1,56,0,101558886,101558942 -6 + chr14 101559856 101559896 chr14,101559856,101559896,+,(CGG)n,Simple_repeat,Simple_repeat,1,42,0,101559856,101559896 -6 + chr14 101628984 101628994 chr14,101628884,101628994,-,MIRb,SINE,MIR,-113,155,40,101628771,101629033 +5 - chr14 101629064 101629306 chr14,101629064,101629306,-,MIRc,SINE,MIR,-2,266,2,101629062,101629307 +6 - chr14 101632413 101632491 chr14,101632389,101632491,+,MIR1_Amn,SINE,MIR,65,167,-63,101632325,101632554 -4 + chr14 101730437 101730487 chr14,101730210,101730580,+,THE1B,LTR,ERVL-MaLR,1,364,0,101730210,101730580 +1 + chr14 101731086 101731108 chr14,101731086,101731224,-,MER5A,DNA,hAT-Charlie,0,189,50,101731086,101731273 +1 - chr14 101731390 101731468 chr14,101731390,101731515,-,MamTip2,DNA,hAT-Tip100,-158,147,29,101731232,101731543 -4 - chr14 101731935 101731976 chr14,101731935,101732011,+,MIRb,SINE,MIR,13,89,-179,101731923,101732190 +4 + chr14 101732236 101732251 chr14,101732202,101732251,+,MIRb,SINE,MIR,141,189,-79,101732062,101732330 +2 + chr14 101732383 101732455 chr14,101732383,101732455,+,MamRTE1,LINE,RTE-BovB,1395,1466,-2346,101730989,101734801 +6 + chr14 101796610 101796650 chr14,101796610,101796650,+,(CAGCC)n,Simple_repeat,Simple_repeat,1,41,0,101796610,101796650 -6 + chr14 101839006 101839070 chr14,101838761,101839070,+,AluSx1,SINE,Alu,1,307,-5,101838761,101839075 -4 + chr14 101839070 101839365 chr14,101839070,101839365,+,AluSx,SINE,Alu,2,298,-14,101839069,101839379 -6 + chr14 101949312 101949425 chr14,101949312,101949661,-,L2a,LINE,L2,-3,3423,2989,101949309,101952649 -5 - chr14 101952416 101952613 chr14,101952307,101952613,-,AluY,SINE,Alu,-5,306,1,101952302,101952613 -1 - chr14 101952847 101953021 chr14,101952847,101953021,+,L1MB4,LINE,L1,5990,6174,-6,101946858,101953027 +6 + chr14 102550368 102550454 chr14,102550368,102550454,-,L1MC,LINE,L1,-1988,5894,5814,102548380,102556267 -6 - chr14 102554710 102554746 chr14,102554617,102554746,-,MER45A,DNA,hAT-Tip100,-34,144,15,102554583,102554760 -2 - chr14 102770040 102770090 chr14,102769849,102770090,+,AluSz6,SINE,Alu,2,293,-19,102769848,102770109 -5 + chr14 102934114 102934165 chr14,102934114,102934252,+,AluSz,SINE,Alu,1,136,-176,102934114,102934428 +4 + chr14 102936942 102937032 chr14,102936890,102937032,+,FLAM_C,SINE,Alu,1,141,-2,102936890,102937034 +2 + chr14 102937032 102937075 chr14,102937032,102937075,+,L1MB5,LINE,L1,6144,6174,0,102930889,102937075 +6 + chr14 102937111 102937177 chr14,102937111,102937314,+,L1MC4,LINE,L1,7413,7617,-425,102929699,102937739 +5 + chr14 103120847 103121031 chr14,103120606,103121106,+,L1MB3,LINE,L1,5690,6175,-8,103114917,103121114 -5 + chr14 103122768 103122866 chr14,103122768,103122866,+,MIRb,SINE,MIR,20,122,-146,103122749,103123012 -6 + chr14 103187420 103187591 chr14,103187420,103187591,+,AluJo,SINE,Alu,1,161,-151,103187420,103187742 -6 + chr14 103188174 103188270 chr14,103188174,103188293,+,FLAM_C,SINE,Alu,19,138,-5,103188156,103188298 -2 + chr14 103188698 103188836 chr14,103188698,103188836,+,L1MA9,LINE,L1,6170,6307,-5,103182529,103188841 -6 + chr14 103208100 103208401 chr14,103208099,103208401,-,AluSg,SINE,Alu,-8,302,1,103208091,103208401 -1 - chr14 103331674 103331993 chr14,103331488,103331993,+,L1MA5,LINE,L1,5786,6300,0,103325703,103331993 -5 + chr14 103525010 103525904 chr14,103524915,103525904,-,LTR5B,LTR,ERVK,0,1002,1,103524915,103525904 +5 - chr14 103526077 103526133 chr14,103526077,103526133,+,SVA_E,Retroposon,SVA,196,250,-1132,103525882,103527265 -6 + chr14 103526994 103527097 chr14,103526994,103527097,-,AluJr,SINE,Alu,-176,136,27,103526818,103527123 +6 - chr14 103527108 103527250 chr14,103527108,103527250,+,MIRb,SINE,MIR,56,204,-64,103527053,103527314 -6 + chr14 103528849 103528983 chr14,103528849,103528983,-,AluJo,SINE,Alu,-181,131,1,103528668,103528983 +6 - chr14 103553421 103553683 chr14,103553400,103553683,+,AluSc,SINE,Alu,2,299,-10,103553399,103553693 +1 + chr14 103553683 103553755 chr14,103553683,103553755,-,MIR,SINE,MIR,-150,80,7,103553533,103553761 -6 - chr14 103553760 103553862 chr14,103553760,103553871,+,MER5B,DNA,hAT-Charlie,40,151,-27,103553721,103553898 +4 + chr14 103682362 103682392 chr14,103682089,103682392,+,AluY,SINE,Alu,2,304,-7,103682088,103682399 -5 + chr14 103682404 103682607 chr14,103682404,103682709,+,AluSx1,SINE,Alu,3,310,-2,103682402,103682711 -2 + chr14 103682858 103682897 chr14,103682784,103682897,-,AluSq,SINE,Alu,-12,301,179,103682772,103683075 +4 - chr14 103683895 103684015 chr14,103683895,103684179,+,AluSz6,SINE,Alu,1,285,-27,103683895,103684206 -1 + chr14 103695158 103695170 chr14,103695158,103695173,+,(TA)n,Simple_repeat,Simple_repeat,1,15,0,103695158,103695173 +5 + chr14 103854296 103854402 chr14,103854276,103854429,-,L2a,LINE,L2,-32,3394,3229,103854244,103857657 -5 - chr14 103854366 103854429 chr14,103854276,103854429,-,L2a,LINE,L2,-32,3394,3229,103854244,103857657 +5 - chr14 103854429 103854544 chr14,103854429,103854743,+,AluJr,SINE,Alu,1,311,-1,103854429,103854744 -2 + chr14 103856240 103856309 chr14,103856240,103856309,-,MIRc,SINE,MIR,-141,127,52,103856099,103856360 -6 - chr14 103856805 103856988 chr14,103856805,103856988,-,LTR33,LTR,ERVL,-3,512,319,103856802,103857306 -6 - chr14 103857597 103857672 chr14,103857597,103857672,-,MLT1A,LTR,ERVL-MaLR,-295,79,1,103857302,103857672 -6 - chr14 103857672 103857772 chr14,103857672,103857772,+,MLT1A0,LTR,ERVL-MaLR,114,209,-156,103857559,103857928 +6 + chr14 103857772 103858049 chr14,103857772,103858074,+,AluSx,SINE,Alu,1,307,-5,103857772,103858079 +5 + chr14 103869871 103869983 chr14,103869827,103869983,+,L2a,LINE,L2,2736,2911,-508,103867092,103870491 -4 + chr14 103877395 103877478 chr14,103877340,103877580,-,HAL1ME,LINE,L1,-53,2412,2178,103877287,103879757 -5 - chr14 104243097 104243166 chr14,104243056,104243166,-,L1ME3B,LINE,L1,-6451,652,544,104236605,104243709 -2 - chr14 104243310 104243498 chr14,104243310,104243498,-,MER63A,DNA,hAT-Blackjack,-1,209,19,104243309,104243516 -6 - chr14 104243612 104243709 chr14,104243612,104243709,-,L1ME3B,LINE,L1,-5913,329,246,104237699,104243954 -6 - chr14 104243709 104243747 chr14,104243709,104244004,-,AluJb,SINE,Alu,-20,292,1,104243689,104244004 -5 - chr14 104275344 104275369 chr14,104274449,104275369,-,L1MC3,LINE,L1,-2716,3430,2477,104271733,104277845 -2 - chr14 104275598 104275629 chr14,104275598,104275665,+,MLT1I,LTR,ERVL-MaLR,73,139,-272,104275526,104275937 +5 + chr14 104377541 104377820 chr14,104377495,104378422,-,L1ME3A,LINE,L1,-92,6081,5083,104377403,104383504 +3 - chr14 104653683 104653957 chr14,104653683,104653976,+,AluJb,SINE,Alu,1,294,-18,104653683,104653994 -2 + chr14 104655475 104655508 chr14,104655322,104655508,+,L1MEd,LINE,L1,1145,1335,-5751,104654178,104661259 -4 + chr14 104655704 104655787 chr14,104655704,104656008,+,L1MEd,LINE,L1,1640,1994,-5092,104654065,104661100 -1 + chr14 104661120 104661199 chr14,104661004,104661199,-,L1M5,LINE,L1,-1443,4703,4524,104659561,104665722 +5 - chr14 104661344 104661481 chr14,104661344,104661481,+,LTR33,LTR,ERVL,372,512,-3,104660973,104661484 -6 + chr14 104661485 104661593 chr14,104661485,104661593,+,L1M4,LINE,L1,3802,3911,-2235,104657684,104663828 -6 + chr14 104661707 104662292 chr14,104661707,104662292,+,L1MC3,LINE,L1,5969,6558,-1227,104655739,104663519 -6 + chr14 104662324 104662713 chr14,104662324,104662713,+,MLT2B2,LTR,ERVL,2,435,-80,104662323,104662793 -6 + chr14 104662723 104662859 chr14,104662723,104662859,+,THE1D,LTR,ERVL-MaLR,177,320,-61,104662547,104662920 -6 + chr14 104662859 104663155 chr14,104662859,104663155,+,AluSz,SINE,Alu,1,297,-15,104662859,104663170 -6 + chr14 104663155 104663224 chr14,104663155,104663224,+,THE1D,LTR,ERVL-MaLR,321,381,0,104662835,104663224 -6 + chr14 104663224 104663298 chr14,104663224,104663298,-,Charlie4a,DNA,hAT-Charlie,-122,386,304,104663102,104663601 +6 - chr14 104663298 104663580 chr14,104663298,104663580,+,AluSx,SINE,Alu,1,267,-45,104663298,104663625 -6 + chr14 104663580 104663879 chr14,104663580,104663879,-,Charlie4a,DNA,hAT-Charlie,-205,303,4,104663375,104663882 +6 - chr14 104664965 104665496 chr14,104664965,104665496,+,(AC)n,Simple_repeat,Simple_repeat,1,533,0,104664965,104665496 -6 + chr14 104684382 104684711 chr14,104684382,104684711,+,L1ME3,LINE,L1,5780,6133,-29,104678603,104684740 +6 + chr14 104684749 104684932 chr14,104684749,104684993,-,Tigger17a,DNA,TcMar-Tigger,-27,627,354,104684722,104685346 -5 - chr14 104690655 104690739 chr14,104690655,104690753,+,MIR3,SINE,MIR,57,155,-53,104690599,104690806 -2 + chr14 104815449 104815482 chr14,104815448,104815482,+,(TTATT)n,Simple_repeat,Simple_repeat,1,36,0,104815448,104815482 -5 + chr14 104821225 104821415 chr14,104821225,104821415,-,MER115,DNA,hAT-Tip100,-287,406,197,104820938,104821611 -6 - chr14 104821588 104822021 chr14,104821588,104822021,-,MLT1C,LTR,ERVL-MaLR,-4,463,1,104821584,104822021 -6 - chr14 104822095 104822238 chr14,104822095,104822238,-,ERVL-B4-int,LTR,ERVL,-526,5141,4992,104821569,104827229 -6 - chr14 104822707 104822868 chr14,104822707,104822868,-,ERVL-B4-int,LTR,ERVL,-1117,4597,4435,104821590,104827302 -6 - chr14 104822960 104823154 chr14,104822960,104823154,-,ERVL-B4-int,LTR,ERVL,-1421,4246,4049,104821539,104827202 -6 - chr14 104823437 104823718 chr14,104823437,104823747,+,AluSg4,SINE,Alu,1,309,-1,104823437,104823748 +5 + chr14 104842663 104842736 chr14,104842489,104842736,-,L1M2,LINE,L1,-1685,4458,4205,104840804,104846940 -1 - chr14 104842748 104842884 chr14,104842748,104842884,+,AluJo,SINE,Alu,1,134,-178,104842748,104843062 +6 + chr14 104844035 104844185 chr14,104844035,104844185,+,OldhAT1,DNA,hAT-Ac,2576,2726,-122,104841460,104844307 +6 + chr14 104844449 104844526 chr14,104844449,104844526,-,MIRb,SINE,MIR,-124,144,65,104844325,104844590 -6 - chr14 104844839 104844866 chr14,104844839,104844866,+,(CTGG)n,Simple_repeat,Simple_repeat,1,29,0,104844839,104844866 +6 + chr14 104845631 104845916 chr14,104845631,104845955,+,MLT1A0,LTR,ERVL-MaLR,5,416,-12,104845627,104845967 +5 + chr14 104857810 104858120 chr14,104857810,104858120,-,AluSx,SINE,Alu,-2,310,1,104857808,104858120 +6 - chr14 104858156 104858467 chr14,104858156,104858467,-,AluSx1,SINE,Alu,0,312,1,104858156,104858467 +6 - chr14 104858521 104858592 chr14,104858521,104858592,+,UCON71_Crp,Unknown,Unknown,186,260,-17,104858336,104858609 -6 + chr14 104858639 104858763 chr14,104858639,104858763,-,L1MB3,LINE,L1,-1,6182,6059,104858638,104864821 +6 - chr14 104904342 104904598 chr14,104903869,104904922,-,L1MEg,LINE,L1,-4378,1356,309,104899491,104905230 -1 - chr14 104904732 104904922 chr14,104903869,104904922,-,L1MEg,LINE,L1,-4378,1356,309,104899491,104905230 -1 - chr14 104905137 104905204 chr14,104905080,104905229,+,L1MEd,LINE,L1,43,206,-6880,104905038,104912109 +5 + chr14 105095263 105095367 chr14,105095263,105095367,-,L1ME4c,LINE,L1,-656,174,89,105094607,105095455 -1 - chr14 105098473 105098573 chr14,105098193,105098700,-,L1MD,LINE,L1,-1719,4427,3888,105096474,105102587 -3 - chr14 105098719 105098856 chr14,105098701,105098856,-,AluJb,SINE,Alu,-20,292,137,105098681,105098992 -2 - chr14 105110347 105110366 chr14,105110334,105110366,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,105110334,105110366 -5 + chr14 105110446 105110746 chr14,105110446,105110746,-,AluSp,SINE,Alu,-11,302,1,105110435,105110746 +6 - chr14 105110761 105110788 chr14,105110761,105110788,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,105110761,105110788 -6 + chr14 105110790 105110807 chr14,105110790,105111988,-,SVA_F,Retroposon,SVA,-8,1367,422,105110782,105112409 +1 - chr14 105370430 105370704 chr14,105370430,105370704,+,AluJb,SINE,Alu,1,293,-19,105370430,105370723 +6 + chr14 105370710 105370746 chr14,105370710,105370746,-,AluSx,SINE,Alu,-66,236,201,105370644,105370946 -6 - chr14 105370746 105370859 chr14,105370746,105370859,-,AluSx,SINE,Alu,-199,113,1,105370547,105370859 -6 - chr14 105371746 105372083 chr14,105371746,105372083,-,MLT1A0,LTR,ERVL-MaLR,-2,363,11,105371744,105372093 -6 - chr14 105372299 105372462 chr14,105372299,105372462,+,L1M4,LINE,L1,4835,5042,-1104,105367465,105373566 +6 + chr14 105372499 105372578 chr14,105372499,105372578,+,L1MB4,LINE,L1,6103,6180,0,105366397,105372578 +6 + chr14 105372580 105372625 chr14,105372580,105372625,+,L1M4,LINE,L1,5157,5203,-943,105367424,105373568 +6 + chr14 105372625 105372918 chr14,105372625,105372918,+,AluY,SINE,Alu,1,298,-13,105372625,105372931 +5 + chr14 105416892 105417171 chr14,105416892,105417171,-,AluSx,SINE,Alu,-20,292,1,105416872,105417171 +6 - chr14 105417171 105417216 chr14,105417171,105417216,-,HAL1b,LINE,L1,-1586,835,786,105415585,105418001 +6 - chr14 105417394 105417695 chr14,105417394,105417695,-,AluY,SINE,Alu,-7,304,2,105417387,105417696 +5 - chr14 105597928 105597977 chr14,105597928,105597977,+,(GTCCAC)n,Simple_repeat,Simple_repeat,1,49,0,105597928,105597977 -6 + chr14 105602839 105602945 chr14,105602839,105603045,+,(CCAGC)n,Simple_repeat,Simple_repeat,1,210,0,105602839,105603045 -1 + chr14 106206603 106206724 chr14,106197571,106206819,-,HERVS71-int,LTR,ERV1,0,8978,4,106197571,106206822 -1 - chr14 106288316 106288514 chr14,106288316,106288514,-,L1MA5,LINE,L1,-10,6290,6100,106288306,106294613 -5 - chr14 106494448 106494906 chr14,106494448,106494906,+,L1PA16,LINE,L1,5367,5826,-340,106489082,106495246 +6 + chr14 106494906 106495192 chr14,106494906,106495192,+,AluSc5,SINE,Alu,7,292,-17,106494900,106495209 +6 + chr14 106495192 106495448 chr14,106495192,106495520,+,L1PA16,LINE,L1,5827,6156,-10,106489366,106495530 +5 + chr14 106504611 106505072 chr14,106504611,106505159,+,MLT2A2,LTR,ERVL,1,554,0,106504611,106505159 +4 + chr14 106520665 106521073 chr14,106520665,106521095,+,MER57A1,LTR,ERV1,1,427,-5,106520665,106521100 +5 + chr15 20141794 20144713 chr15,20141433,20144713,+,G-rich,Low_complexity,Low_complexity,1,3520,0,20141433,20144713 +1 + chr15 20144796 20144963 chr15,20144796,20144963,-,REP522,Satellite,telo,-592,185,1,20144204,20144963 -6 - chr15 20144869 20144958 chr15,20144796,20144963,-,REP522,Satellite,telo,-592,185,1,20144204,20144963 +3 - chr15 20145507 20145984 chr15,20145507,20145984,-,REP522,Satellite,telo,-148,1669,1155,20145359,20147138 -6 - chr15 20145822 20145984 chr15,20145507,20145984,-,REP522,Satellite,telo,-148,1669,1155,20145359,20147138 +4 - chr15 20145984 20146430 chr15,20145984,20147275,+,L1M1,LINE,L1,2788,4148,-1998,20143197,20149273 +5 + chr15 20147702 20147758 chr15,20147275,20147758,-,REP522,Satellite,telo,0,1817,1297,20147275,20149054 +4 - chr15 20147760 20147953 chr15,20147760,20148412,-,TAR1,Satellite,telo,-244,1867,1088,20147516,20149499 +1 - chr15 20344751 20344815 chr15,20344751,20344815,-,MIRc,SINE,MIR,-179,89,22,20344572,20344836 -6 - chr15 20352361 20352584 chr15,20352177,20352584,-,MLT1D,LTR,ERVL-MaLR,-47,458,5,20352130,20352588 -1 - chr15 20352920 20353120 chr15,20352920,20353223,-,AluJr,SINE,Alu,-2,310,6,20352918,20353228 -4 - chr15 20356395 20356415 chr15,20356380,20356415,-,AluJb,SINE,Alu,-190,122,88,20356190,20356502 -2 - chr15 20642799 20642863 chr15,20642724,20642863,-,L1MCb,LINE,L1,-5903,142,1,20636821,20642863 +5 - chr15 20643413 20643448 chr15,20643413,20643491,+,A-rich,Low_complexity,Low_complexity,1,79,0,20643413,20643491 -1 + chr15 20659339 20659649 chr15,20659339,20659649,+,AluSx3,SINE,Alu,1,309,-2,20659339,20659651 +6 + chr15 20659930 20660037 chr15,20659930,20660037,-,Plat_L3,LINE,CR1,-43,3543,3438,20659887,20663474 -6 - chr15 20660768 20660843 chr15,20660768,20660843,-,MADE2,DNA,TcMar-Mariner,0,80,3,20660768,20660845 -6 - chr15 20661929 20661959 chr15,20661929,20661959,+,(CTAATA)n,Simple_repeat,Simple_repeat,1,31,0,20661929,20661959 +6 + chr15 20662205 20662263 chr15,20662205,20662263,+,A-rich,Low_complexity,Low_complexity,1,62,0,20662205,20662263 +6 + chr15 20663015 20663067 chr15,20663015,20663067,+,A-rich,Low_complexity,Low_complexity,1,50,0,20663015,20663067 +6 + chr15 20663106 20663164 chr15,20663106,20663164,+,(ATAATT)n,Simple_repeat,Simple_repeat,1,61,0,20663106,20663164 +6 + chr15 20663568 20663692 chr15,20663568,20663692,+,(ATATAAT)n,Simple_repeat,Simple_repeat,1,130,0,20663568,20663692 +6 + chr15 20663644 20663697 chr15,20663644,20663697,+,(AATAA)n,Simple_repeat,Simple_repeat,1,55,0,20663644,20663697 +6 + chr15 20664024 20664149 chr15,20664024,20664149,-,L1ME3A,LINE,L1,-8,6165,6031,20664016,20670179 -6 - chr15 20664294 20664334 chr15,20664294,20664334,-,MER63D,DNA,hAT-Blackjack,-977,84,45,20663317,20664378 -6 - chr15 20664506 20664689 chr15,20664506,20664689,+,MIR,SINE,MIR,91,262,0,20664416,20664689 +6 + chr15 20664826 20664970 chr15,20664826,20665153,+,L1ME3D,LINE,L1,5879,6223,-19,20658948,20665172 +5 + chr15 20729835 20729906 chr15,20729835,20729906,+,L1MC5a,LINE,L1,2010,2083,-694,20727826,20730600 -6 + chr15 20730113 20730354 chr15,20730113,20730354,+,L1MC5a,LINE,L1,2382,2622,-155,20727732,20730509 -6 + chr15 20730679 20730802 chr15,20730679,20730802,-,L1MEc,LINE,L1,-755,5597,5488,20729924,20736289 +6 - chr15 20730802 20731094 chr15,20730802,20731109,+,AluSx1,SINE,Alu,5,294,-18,20730798,20731127 -2 + chr15 20756055 20756072 chr15,20756055,20756072,+,(CCG)n,Simple_repeat,Simple_repeat,1,17,0,20756055,20756072 -6 + chr15 20940438 20940766 chr15,20939505,20942010,-,REP522,Satellite,telo,-203,2450,1,20939302,20942010 -1 - chr15 20972106 20972149 chr15,20971913,20973440,-,L1M1,LINE,L1,-6004,1561,10,20965909,20973449 -3 - chr15 20979143 20979181 chr15,20979143,20979181,+,A-rich,Low_complexity,Low_complexity,1,38,0,20979143,20979181 +6 + chr15 20981823 20981872 chr15,20981314,20981872,+,L2c,LINE,L2,1924,2485,-934,20979391,20982806 +2 + chr15 20981930 20981980 chr15,20981930,20982363,-,LTR16C,LTR,ERVL,-17,472,7,20981913,20982369 -4 - chr15 20983100 20983404 chr15,20983020,20983404,+,L2c,LINE,L2,3045,3387,0,20979976,20983404 +2 + chr15 20990651 20990834 chr15,20990651,20990834,+,MIR1_Amn,SINE,MIR,4,201,-67,20990648,20990901 +5 + chr15 20992397 20992446 chr15,20992397,20992446,+,(TTCTGCT)n,Simple_repeat,Simple_repeat,1,50,0,20992397,20992446 +6 + chr15 21127698 21127991 chr15,21127404,21128336,-,MER49,LTR,ERV1,-2,921,5,21127402,21128340 +5 - chr15 21129880 21129942 chr15,21129821,21129942,+,MIRb,SINE,MIR,21,143,-125,21129801,21130067 -4 + chr15 21148334 21151253 chr15,21147973,21151253,+,G-rich,Low_complexity,Low_complexity,1,3518,0,21147973,21151253 +1 + chr15 21151336 21151503 chr15,21151336,21151503,-,REP522,Satellite,telo,-592,185,1,21150744,21151503 -6 - chr15 21152047 21152524 chr15,21152047,21152524,-,REP522,Satellite,telo,-148,1669,1155,21151899,21153678 -6 - chr15 21152524 21152970 chr15,21152524,21153815,+,L1M1,LINE,L1,2788,4148,-1998,21149737,21155813 +5 + chr15 21298477 21298847 chr15,21298477,21298847,+,L2,LINE,L2,1803,2218,-1201,21296675,21300048 -6 + chr15 21298884 21298955 chr15,21298884,21298955,+,L1MC5a,LINE,L1,2010,2083,-694,21296875,21299649 -6 + chr15 21299162 21299403 chr15,21299162,21299403,+,L1MC5a,LINE,L1,2382,2622,-155,21296781,21299558 -6 + chr15 21299454 21299717 chr15,21299454,21299717,+,L2,LINE,L2,2474,2754,-665,21296981,21300382 -6 + chr15 21299728 21299851 chr15,21299728,21299851,-,L1MD2,LINE,L1,-755,5597,5488,21298973,21305338 +6 - chr15 21299851 21300143 chr15,21299851,21300158,+,AluSx1,SINE,Alu,5,294,-18,21299847,21300176 -2 + chr15 21325113 21325130 chr15,21325113,21325130,+,(CCG)n,Simple_repeat,Simple_repeat,1,17,0,21325113,21325130 -6 + chr15 21370550 21370627 chr15,21370550,21370680,+,L1MA7,LINE,L1,4114,4240,-1906,21366437,21372586 +5 + chr15 21990176 21990214 chr15,21990176,21990214,+,A-rich,Low_complexity,Low_complexity,1,38,0,21990176,21990214 +6 + chr15 21992855 21992904 chr15,21992347,21992904,+,L2c,LINE,L2,1924,2485,-934,21990424,21993838 +2 + chr15 21992962 21993012 chr15,21992962,21993395,-,LTR16C,LTR,ERVL,-17,472,7,21992945,21993401 -4 - chr15 21994132 21994436 chr15,21994052,21994436,+,L2c,LINE,L2,3045,3387,0,21991008,21994436 +2 + chr15 22001696 22001774 chr15,22001696,22001880,+,MIR1_Amn,SINE,MIR,3,201,-67,22001694,22001947 +4 + chr15 22059326 22059409 chr15,22059326,22059569,+,HAL1,LINE,L1,91,322,-2185,22059236,22061754 +4 + chr15 22083160 22083202 chr15,22083160,22083202,+,(AATATAT)n,Simple_repeat,Simple_repeat,1,42,0,22083160,22083202 +5 + chr15 22095500 22095571 chr15,22095500,22095571,-,L2a,LINE,L2,-2,3424,3360,22095498,22098930 -6 - chr15 22095605 22095774 chr15,22095605,22095774,-,L2,LINE,L2,-405,3014,2830,22095200,22098603 -5 - chr15 22758493 22758505 chr15,22758208,22758505,+,AluYm1,SINE,Alu,1,297,-14,22758208,22758519 +1 + chr15 22764481 22764516 chr15,22764481,22765002,-,L1MB3,LINE,L1,-8,6175,5607,22764473,22770608 -5 - chr15 22774291 22774313 chr15,22774291,22774451,-,MIRb,SINE,MIR,-70,198,28,22774221,22774478 -4 - chr15 22777767 22778019 chr15,22777682,22778019,-,AluYm1,SINE,Alu,0,311,3,22777682,22778021 -2 - chr15 22778019 22778435 chr15,22778019,22778435,-,L1M5,LINE,L1,-2456,3690,3180,22775563,22781614 -6 - chr15 22778451 22778741 chr15,22778451,22778913,-,L1M5,LINE,L1,-3316,2830,2355,22775135,22781267 -5 - chr15 23914758 23914826 chr15,23914758,23915019,-,L1MEc,LINE,L1,-6056,344,62,23908702,23915080 -4 - chr15 23935211 23935309 chr15,23934961,23935372,+,MSTB1,LTR,ERVL-MaLR,1,419,-13,23934961,23935385 +3 + chr15 23941697 23941715 chr15,23940965,23941715,-,L1MC3,LINE,L1,-1799,4341,3539,23939166,23945253 -2 - chr15 23975172 23975255 chr15,23975145,23975331,+,MLT1E1,LTR,ERVL-MaLR,418,654,0,23974728,23975331 +1 + chr15 23979071 23979110 chr15,23978309,23979110,-,L1M4,LINE,L1,-1804,4342,3519,23976505,23982628 -2 - chr15 23979187 23979211 chr15,23979187,23979285,+,MLT1E1A,LTR,ERVL-MaLR,580,680,0,23978608,23979285 +4 + chr15 24003338 24003435 chr15,24001953,24004103,-,ERVL-B4-int,LTR,ERVL,-2900,2814,535,23999053,24004637 -5 - chr15 24162754 24163282 chr15,24162688,24163334,-,LTR38B,LTR,ERV1,0,610,18,24162688,24163351 +5 - chr15 24165378 24167609 chr15,24165378,24167609,-,PABL_B-int,LTR,ERV1,-2913,4209,1983,24162465,24169591 +6 - chr15 24168082 24168439 chr15,24168082,24168439,-,PABL_B-int,LTR,ERV1,-5860,1262,909,24162222,24169347 +6 - chr15 24168734 24168895 chr15,24168734,24168986,-,PABL_B-int,LTR,ERV1,-6387,735,482,24162347,24169467 +2 - chr15 24169917 24169948 chr15,24169917,24170312,-,LTR38-int,LTR,ERV1,-1342,444,53,24168575,24170364 +1 - chr15 24206784 24206893 chr15,24206764,24207049,-,AluJo,SINE,Alu,-23,289,3,24206741,24207051 -1 - chr15 24225296 24225627 chr15,24224625,24225741,+,ERVL47-int,LTR,ERVL,1158,2313,-2933,24223468,24228674 +3 + chr15 24225750 24225854 chr15,24225750,24226070,+,ERVL47-int,LTR,ERVL,2466,2794,-2452,24223285,24228522 +5 + chr15 24238145 24238366 chr15,24237771,24238430,-,LTR38B,LTR,ERV1,0,610,1,24237771,24238430 +5 - chr15 24257117 24257218 chr15,24257098,24257218,-,AluSx3,SINE,Alu,-15,296,176,24257083,24257393 -2 - chr15 24274791 24274820 chr15,24274330,24274820,-,L1MC3,LINE,L1,-2129,4190,3701,24272201,24278520 -2 - chr15 24276578 24276789 chr15,24276578,24276789,-,L1MC3,LINE,L1,-6082,318,92,24270496,24276880 -6 - chr15 24276815 24276829 chr15,24276815,24276898,-,MLT1F2,LTR,ERVL-MaLR,-478,82,1,24276337,24276898 -5 - chr15 24299749 24299769 chr15,24299648,24299843,+,MLT1E1A,LTR,ERVL-MaLR,428,680,0,24299221,24299843 +1 + chr15 24300462 24300616 chr15,24300462,24300616,+,FAM,SINE,Alu,3,151,-34,24300460,24300650 +6 + chr15 24442859 24442991 chr15,24442859,24443071,-,L1MC3,LINE,L1,-6082,318,92,24436777,24443162 -4 - chr15 24444493 24444531 chr15,24444053,24444531,-,L1M4,LINE,L1,-2115,4031,3518,24441938,24448048 -2 - chr15 24447751 24447967 chr15,24447751,24448085,-,MER54A,LTR,ERVL,-24,877,543,24447727,24448627 -5 - chr15 24493248 24493328 chr15,24493248,24493460,-,L1MC3,LINE,L1,-6082,318,92,24487166,24493551 -4 - chr15 24507339 24507376 chr15,24506213,24507376,-,L1M4,LINE,L1,-1452,4694,3520,24504761,24510895 -2 - chr15 24507454 24507478 chr15,24507454,24507552,+,MLT1E1A,LTR,ERVL-MaLR,580,680,0,24506875,24507552 +4 + chr15 24508861 24508994 chr15,24508830,24509353,-,MER54A,LTR,ERVL,0,901,373,24508830,24509725 -3 - chr15 24512980 24513173 chr15,24512641,24513330,-,HERV35I-int,LTR,ERV1,-421,6497,5937,24512220,24519266 -5 - chr15 24513623 24513737 chr15,24513608,24513895,-,AluJo,SINE,Alu,-23,289,3,24513585,24513897 -3 - chr15 24521681 24521830 chr15,24520355,24523051,-,ERVL-B4-int,LTR,ERVL,-2899,2815,10,24517456,24523060 -1 - chr15 24533695 24533745 chr15,24533316,24533745,+,LTR47B2,LTR,ERVL,1,434,0,24533316,24533745 +1 + chr15 24533752 24533952 chr15,24533752,24534492,+,ERVL47-int,LTR,ERVL,22,838,-4408,24533731,24538900 +5 + chr15 24535680 24535806 chr15,24535647,24535977,+,ERVL47-int,LTR,ERVL,2456,2794,-2452,24533192,24538429 +3 + chr15 24547796 24547911 chr15,24547766,24547911,+,FRAM,SINE,Alu,13,157,-19,24547754,24547930 +1 + chr15 24558152 24558472 chr15,24558078,24558472,-,PABL_B-int,LTR,ERV1,-1342,444,53,24556736,24558524 -1 - chr15 24558493 24559100 chr15,24558493,24559100,-,L1PA13,LINE,L1,-186,5977,5394,24558307,24564493 -6 - chr15 24559150 24559363 chr15,24559150,24559363,+,L1P3,LINE,L1,3289,3503,-2643,24555862,24562006 +6 + chr15 24568531 24568563 chr15,24568515,24568937,-,L1PB1,LINE,L1,-2,6149,5736,24568513,24574672 -3 - chr15 24569783 24569809 chr15,24569576,24569983,-,L1MC3,LINE,L1,-20,7765,7326,24569556,24577308 -3 - chr15 24570026 24570128 chr15,24569983,24570328,-,AluJb,SINE,Alu,-11,301,1,24569972,24570328 -1 - chr15 24587567 24587606 chr15,24586628,24587606,-,L1M4,LINE,L1,-1643,4503,3518,24584985,24591123 -1 - chr15 24587671 24587768 chr15,24587671,24587768,+,MLT1E1A,LTR,ERVL-MaLR,580,680,0,24587092,24587768 +6 + chr15 24623968 24624041 chr15,24623852,24624041,-,L1M4,LINE,L1,-2462,3684,3519,24621390,24627559 -2 - chr15 24624050 24624109 chr15,24624050,24624232,+,MLT1E,LTR,ERVL-MaLR,434,653,0,24623617,24624232 +4 + chr15 24652035 24652130 chr15,24651898,24652205,-,Kanga1a,DNA,TcMar-Tc2,-124,630,279,24651774,24652483 -5 - chr15 24848893 24849230 chr15,24848893,24849230,-,AluSc5,SINE,Alu,0,309,1,24848893,24849230 -6 - chr15 24849354 24849710 chr15,24849354,24849710,+,MER54B,LTR,ERVL,430,793,0,24848925,24849710 +6 + chr15 24849844 24850233 chr15,24849844,24850233,-,Kanga1d,DNA,TcMar-Tc2,-124,485,87,24849720,24850319 -6 - chr15 24850313 24850614 chr15,24850313,24850614,-,AluSx1,SINE,Alu,-15,297,1,24850298,24850614 -6 - chr15 24850909 24851134 chr15,24850909,24851134,-,AluJb,SINE,Alu,-1,311,84,24850908,24851217 -6 - chr15 24851549 24851611 chr15,24851549,24851611,+,G-rich,Low_complexity,Low_complexity,1,65,0,24851549,24851611 +6 + chr15 24982480 24982586 chr15,24982480,24982586,+,L2b,LINE,L2,3287,3424,-2,24979194,24982588 +6 + chr15 24982611 24982880 chr15,24982611,24982880,-,AluJr,SINE,Alu,-29,283,3,24982582,24982882 -6 - chr15 24983127 24983421 chr15,24983127,24983421,+,AluSx1,SINE,Alu,19,305,-7,24983109,24983428 +6 + chr15 24983509 24983786 chr15,24983509,24983805,+,AluSx,SINE,Alu,1,300,-12,24983509,24983817 +5 + chr15 24985385 24985613 chr15,24985385,24985613,-,AluSz6,SINE,Alu,-69,243,1,24985316,24985613 -6 - chr15 24985885 24985915 chr15,24985885,24985915,+,(TTAAT)n,Simple_repeat,Simple_repeat,1,30,0,24985885,24985915 +6 + chr15 24986846 24986894 chr15,24986846,24986894,+,(TGTGCGTG)n,Simple_repeat,Simple_repeat,1,48,0,24986846,24986894 +6 + chr15 24987476 24987621 chr15,24987476,24987621,-,MER5A,DNA,hAT-Charlie,0,189,37,24987476,24987657 -6 - chr15 24988000 24988033 chr15,24988000,24988033,+,A-rich,Low_complexity,Low_complexity,1,33,0,24988000,24988033 +6 + chr15 25001907 25001934 chr15,25001907,25001934,+,(TGTG)n,Simple_repeat,Simple_repeat,1,27,0,25001907,25001934 +6 + chr15 25002815 25002888 chr15,25002815,25002904,-,L1M4c,LINE,L1,-1555,4827,4737,25001260,25007640 -5 - chr15 25021991 25022161 chr15,25021991,25022161,-,MER58A,DNA,hAT-Charlie,-55,169,1,25021936,25022161 -6 - chr15 25031818 25031851 chr15,25031591,25031851,-,AluJr,SINE,Alu,-7,305,43,25031584,25031893 +4 - chr15 25031851 25032047 chr15,25031851,25032123,-,L1MEf,LINE,L1,-5316,884,589,25026535,25032711 +1 - chr15 25031873 25032123 chr15,25031851,25032123,-,L1MEf,LINE,L1,-5316,884,589,25026535,25032711 -1 - chr15 25032132 25032330 chr15,25032132,25032330,-,MER20,DNA,hAT-Charlie,-5,214,44,25032127,25032373 -6 - chr15 25032433 25032891 chr15,25032433,25032891,-,L1MEf,LINE,L1,-5525,569,34,25026908,25032924 -6 - chr15 25034443 25034536 chr15,25034443,25034536,+,(ATCT)n,Simple_repeat,Simple_repeat,1,100,0,25034443,25034536 +6 + chr15 25034892 25035089 chr15,25034892,25035089,-,MER58A,DNA,hAT-Charlie,0,224,26,25034892,25035114 -6 - chr15 25035823 25035937 chr15,25035823,25035937,+,L1ME3G,LINE,L1,64,163,-761,25035760,25036698 +6 + chr15 25112655 25113638 chr15,25112655,25113638,+,L1M4a1,LINE,L1,2086,3097,-3222,25110570,25116860 +6 + chr15 25113638 25113927 chr15,25113638,25113932,+,AluJb,SINE,Alu,1,292,-20,25113638,25113952 +5 + chr15 25115299 25115549 chr15,25115166,25115549,+,MER54A,LTR,ERVL,1,400,-501,25115166,25116050 +2 + chr15 25115550 25115602 chr15,25115550,25115602,+,(TC)n,Simple_repeat,Simple_repeat,1,52,0,25115550,25115602 +6 + chr15 25119620 25120226 chr15,25119620,25120226,-,L1ME3G,LINE,L1,-415,5709,5271,25119205,25125496 -6 - chr15 25120625 25120659 chr15,25120625,25120659,+,(TGTCTCC)n,Simple_repeat,Simple_repeat,1,36,0,25120625,25120659 +6 + chr15 25120677 25120810 chr15,25120677,25120810,-,L1ME3G,LINE,L1,-1543,4603,4472,25119134,25125281 -6 - chr15 25120832 25120896 chr15,25120832,25120896,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,66,0,25120832,25120896 +6 + chr15 25121135 25121399 chr15,25121135,25121399,-,MER110,LTR,ERV1,0,491,166,25121135,25121564 -6 - chr15 25121728 25122073 chr15,25121728,25122073,-,L1ME3G,LINE,L1,-2288,3852,3501,25119440,25125573 -6 - chr15 25130978 25131337 chr15,25130303,25131822,-,L1MC4a,LINE,L1,-2573,3746,2051,25127730,25133872 -5 - chr15 25136749 25136796 chr15,25136749,25136796,+,(ATATGT)n,Simple_repeat,Simple_repeat,1,47,0,25136749,25136796 +6 + chr15 25136798 25137095 chr15,25136798,25137095,+,MER2,DNA,TcMar-Tigger,3,307,-38,25136796,25137133 +6 + chr15 25137603 25137784 chr15,25137603,25137784,-,MIR,SINE,MIR,-14,248,62,25137589,25137845 -6 - chr15 25174813 25174847 chr15,25173872,25174847,-,MER11C,LTR,ERVK,0,1071,1,25173872,25174847 -2 - chr15 25252269 25252333 chr15,25252269,25253758,-,LTR12C,LTR,ERV1,0,1579,3,25252269,25253760 -4 - chr15 25255613 25257027 chr15,25255613,25261749,+,L1PA5,LINE,L1,4,6140,-14,25255610,25261763 +5 + chr15 25345633 25345978 chr15,25344916,25345978,+,L1M8,LINE,L1,5,1129,-1226,25344912,25347204 -5 + chr15 25345979 25347018 chr15,25345979,25347018,+,L1ME2,LINE,L1,536,1682,-4951,25345444,25351969 -6 + chr15 25347012 25347235 chr15,25347012,25347419,+,L1ME2,LINE,L1,1908,2380,-4253,25345105,25351672 -1 + chr15 25373522 25373776 chr15,25373476,25373776,-,AluSc,SINE,Alu,-11,298,1,25373465,25373776 -2 - chr15 25373921 25374075 chr15,25373921,25374075,-,Tigger9a,DNA,TcMar-Tigger,-18,714,552,25373903,25374626 -6 - chr15 25374149 25374180 chr15,25374149,25374180,+,(CAGTAA)n,Simple_repeat,Simple_repeat,1,33,0,25374149,25374180 +6 + chr15 25375137 25375281 chr15,25375137,25375281,+,Tigger16a,DNA,TcMar-Tigger,793,942,-15,25374345,25375296 +6 + chr15 25417956 25418238 chr15,25417956,25418238,-,Tigger3a,DNA,TcMar-Tigger,-61,287,1,25417895,25418238 -6 - chr15 25418289 25418695 chr15,25418289,25418695,+,L1ME2z,LINE,L1,5647,6114,-330,25412643,25419025 +6 + chr15 25418700 25418855 chr15,25418700,25418855,+,MLT1G1,LTR,ERVL-MaLR,1,128,-467,25418700,25419322 +6 + chr15 25418855 25419061 chr15,25418855,25419061,-,MER2,DNA,TcMar-Tigger,0,345,138,25418855,25419198 -6 - chr15 25419061 25419186 chr15,25419061,25419186,+,MLT1G1,LTR,ERVL-MaLR,453,579,0,25418609,25419186 +6 + chr15 25419191 25419369 chr15,25419191,25419369,+,L1ME2z,LINE,L1,6145,6342,-102,25413047,25419471 +6 + chr15 25419426 25419462 chr15,25419426,25420478,+,L1ME1,LINE,L1,1690,2782,-3537,25417737,25424015 +5 + chr15 25484831 25484854 chr15,25484764,25484854,-,L1MDb,LINE,L1,-4458,2282,2190,25480306,25487043 +5 - chr15 25484865 25484996 chr15,25484865,25484996,-,AluJo,SINE,Alu,-24,288,136,25484841,25485131 +6 - chr15 25484997 25486345 chr15,25484997,25486345,-,L1MDb,LINE,L1,-4537,2203,762,25480460,25487106 +6 - chr15 25486360 25486435 chr15,25486360,25486435,+,L2b,LINE,L2,3238,3326,-49,25483123,25486484 -6 + chr15 25486454 25486478 chr15,25486454,25486478,+,(TGTGC)n,Simple_repeat,Simple_repeat,1,26,0,25486454,25486478 -6 + chr15 25486534 25486826 chr15,25486534,25486826,+,MLT1I,LTR,ERVL-MaLR,116,402,-9,25486419,25486835 -6 + chr15 25501085 25501182 chr15,25500674,25501182,-,MER119,DNA,hAT-Charlie,0,583,36,25500674,25501217 +4 - chr15 25578625 25578791 chr15,25578469,25578892,+,MSTD,LTR,ERVL-MaLR,1,396,0,25578469,25578892 -1 + chr15 25708489 25708619 chr15,25708489,25708619,-,AluJb,SINE,Alu,-180,132,2,25708309,25708620 +6 - chr15 25708829 25708941 chr15,25708829,25708941,+,MER53,DNA,hAT,90,193,0,25708740,25708941 -6 + chr15 25709046 25709260 chr15,25709046,25709260,+,MER106A,DNA,hAT-Charlie,3,233,-3,25709044,25709263 -6 + chr15 25877030 25877064 chr15,25877030,25877064,+,(ACAGGCC)n,Simple_repeat,Simple_repeat,1,37,0,25877030,25877064 +6 + chr15 25902457 25902566 chr15,25902457,25902660,+,MIRb,SINE,MIR,36,246,-22,25902422,25902682 +4 + chr15 26049125 26049242 chr15,26049079,26049406,-,AluSx3,SINE,Alu,0,311,1,26049079,26049406 -3 - chr15 26050572 26050729 chr15,26050572,26050729,-,MIRb,SINE,MIR,-13,255,93,26050559,26050821 +6 - chr15 26051667 26051828 chr15,26051667,26051828,-,L2b,LINE,L2,-7,3380,3227,26051660,26055054 +6 - chr15 26051884 26051919 chr15,26051884,26051919,+,(CTG)n,Simple_repeat,Simple_repeat,1,36,0,26051884,26051919 -6 + chr15 26052028 26052072 chr15,26051944,26052072,-,MIR,SINE,MIR,-43,219,88,26051901,26052159 -2 - chr15 26051944 26052072 chr15,26051944,26052072,-,MIR,SINE,MIR,-43,219,88,26051901,26052159 +6 - chr15 26052548 26053120 chr15,26052548,26053146,+,MER92B,LTR,ERV1,2,635,-1,26052547,26053147 +5 + chr15 26116180 26116272 chr15,26116068,26116272,-,MER63A,DNA,hAT-Blackjack,0,210,1,26116068,26116272 -2 - chr15 26116555 26116672 chr15,26116555,26116795,+,L1MC5a,LINE,L1,1737,1913,-864,26114819,26117659 +5 + chr15 26118708 26118768 chr15,26118238,26118768,-,MER74A,LTR,ERVL,-13,545,15,26118225,26118782 -1 - chr15 26125871 26126371 chr15,26125871,26126386,+,LTR67B,LTR,ERVL,60,618,-2,26125812,26126388 +5 + chr15 26132306 26132348 chr15,26132306,26132348,+,GA-rich,Low_complexity,Low_complexity,1,42,0,26132306,26132348 +6 + chr15 27157615 27157693 chr15,27157568,27157693,+,MIRc,SINE,MIR,30,170,-98,27157539,27157791 -5 + chr15 27161191 27161319 chr15,27161191,27161472,-,LTR40a,LTR,ERVL,0,519,229,27161191,27161700 +1 - chr15 27362880 27362939 chr15,27362880,27362939,-,UCON41,Unknown,Unknown,-7,132,75,27362873,27363013 -6 - chr15 27364909 27365288 chr15,27364909,27365288,-,L1MC4,LINE,L1,0,8042,7685,27364909,27372972 -6 - chr15 27365288 27365339 chr15,27365288,27365339,+,(AC)n,Simple_repeat,Simple_repeat,1,51,0,27365288,27365339 +6 + chr15 27365339 27365704 chr15,27365339,27365704,-,L1MC4,LINE,L1,-358,7684,7300,27364981,27373003 -6 - chr15 27420682 27420698 chr15,27420310,27420698,+,L1MA9,LINE,L1,5873,6310,-2,27414438,27420700 -4 + chr15 27428074 27428186 chr15,27427878,27428186,-,AluJr,SINE,Alu,-8,304,3,27427870,27428188 -2 - chr15 27483090 27483296 chr15,27483090,27483529,-,MLT1C,LTR,ERVL-MaLR,0,467,1,27483090,27483529 +2 - chr15 27541919 27541955 chr15,27541919,27541955,+,(TGTATT)n,Simple_repeat,Simple_repeat,1,36,0,27541919,27541955 -6 + chr15 27629172 27629289 chr15,27627410,27629520,+,L1MEg,LINE,L1,1055,3155,-3164,27626356,27632684 +5 + chr15 27775623 27775696 chr15,27775623,27775969,-,MLT1B,LTR,ERVL-MaLR,-11,379,1,27775612,27775969 -4 - chr15 28970270 28970385 chr15,28970270,28970385,+,(TAATATA)n,Simple_repeat,Simple_repeat,1,121,0,28970270,28970385 -6 + chr15 28970394 28970512 chr15,28970394,28970530,+,FLAM_C,SINE,Alu,1,133,-10,28970394,28970540 -2 + chr15 28977093 28977411 chr15,28977093,28977411,-,MLT1A0,LTR,ERVL-MaLR,-11,354,1,28977082,28977411 +6 - chr15 29373602 29373645 chr15,29373564,29373645,+,(TTGTTT)n,Simple_repeat,Simple_repeat,1,85,0,29373564,29373645 -5 + chr15 29373645 29373681 chr15,29373645,29373681,+,(ATTTT)n,Simple_repeat,Simple_repeat,2,120,0,29373644,29373681 -6 + chr15 29373806 29374142 chr15,29373806,29374142,+,L1ME4a,LINE,L1,5782,6124,0,29368025,29374142 -6 + chr15 29374224 29374568 chr15,29374224,29374568,-,L1MEc,LINE,L1,-4115,2285,1940,29370109,29376507 +6 - chr15 29374552 29374987 chr15,29374552,29374987,-,L1MEc,LINE,L1,-4984,1416,956,29369568,29375942 +6 - chr15 29374985 29375572 chr15,29374985,29375572,-,L1MEc,LINE,L1,-5570,830,206,29369415,29375777 +6 - chr15 29375574 29375867 chr15,29375574,29375867,+,ERVL-E-int,LTR,ERVL,1235,1539,-4128,29374340,29379995 -6 + chr15 29376551 29376586 chr15,29376551,29376586,+,(AC)n,Simple_repeat,Simple_repeat,1,35,0,29376551,29376586 -6 + chr15 29609676 29609752 chr15,29609338,29609752,+,MSTC,LTR,ERVL-MaLR,1,396,0,29609338,29609752 -5 + chr15 29609753 29609831 chr15,29609753,29609831,-,L1ME4b,LINE,L1,-450,442,357,29609303,29610187 +6 - chr15 29610021 29610131 chr15,29610021,29610131,-,L2b,LINE,L2,0,3375,3244,29610021,29613374 +6 - chr15 29610479 29610517 chr15,29610479,29610517,+,A-rich,Low_complexity,Low_complexity,1,38,0,29610479,29610517 -6 + chr15 29610658 29610755 chr15,29610658,29610755,-,MER117,DNA,hAT-Charlie,-44,153,46,29610614,29610800 +6 - chr15 29610956 29611212 chr15,29610956,29611361,-,LTR103_Mam,LTR,ERV1?,0,475,48,29610956,29611408 +1 - chr15 29675465 29675526 chr15,29675465,29675739,+,AluJb,SINE,Alu,41,292,-20,29675425,29675759 +4 + chr15 29677659 29677768 chr15,29677659,29677768,-,L2c,LINE,L2,-227,3160,3029,29677432,29680796 -6 - chr15 29678684 29678830 chr15,29678684,29678830,-,MLT1A,LTR,ERVL-MaLR,-113,482,323,29678571,29679152 -6 - chr15 29680752 29680896 chr15,29680438,29680896,-,Charlie3,DNA,hAT-Charlie,0,2706,2242,29680438,29683137 -2 - chr15 29680890 29680957 chr15,29680890,29681350,-,Charlie3,DNA,hAT-Charlie,-2206,500,2,29678684,29681351 -5 - chr15 29728274 29728314 chr15,29728274,29728314,+,MER96B,DNA,hAT-Tip100,191,230,-187,29728084,29728501 -6 + chr15 29728314 29728400 chr15,29728314,29728400,-,Charlie17a,DNA,hAT-Charlie,0,217,129,29728314,29728528 +6 - chr15 29729149 29729327 chr15,29729149,29729327,+,AluSg4,SINE,Alu,132,308,-2,29729018,29729329 -6 + chr15 29823805 29824081 chr15,29823805,29824111,+,AluSx4,SINE,Alu,1,310,0,29823805,29824111 +5 + chr15 30052942 30053038 chr15,30052893,30053309,-,MSTA,LTR,ERVL-MaLR,0,428,1,30052893,30053309 +5 - chr15 30178929 30179053 chr15,30178929,30179053,-,MIRc,SINE,MIR,-122,146,15,30178807,30179067 +6 - chr15 30179635 30179865 chr15,30179635,30179865,+,L3,LINE,CR1,3868,4096,-3,30175768,30179868 -6 + chr15 30210541 30210649 chr15,30210541,30210649,-,LTR88b,LTR,Gypsy?,-411,426,308,30210130,30210956 -6 - chr15 30210894 30211362 chr15,30210894,30211362,+,L2a,LINE,L2,2942,3426,0,30207953,30211362 +6 + chr15 30211429 30211729 chr15,30211429,30211729,+,AluSz,SINE,Alu,1,301,-11,30211429,30211740 +6 + chr15 30211729 30211773 chr15,30211729,30211773,+,GA-rich,Low_complexity,Low_complexity,7,50,0,30211723,30211773 +6 + chr15 30212077 30212105 chr15,30212077,30212105,+,(ATAA)n,Simple_repeat,Simple_repeat,1,28,0,30212077,30212105 +6 + chr15 30212587 30212636 chr15,30212587,30212636,-,MLT2D,LTR,ERVL,0,560,512,30212587,30213147 -6 - chr15 30212650 30212722 chr15,30212650,30212722,+,(TA)n,Simple_repeat,Simple_repeat,1,74,0,30212650,30212722 +6 + chr15 30212721 30212759 chr15,30212721,30212759,+,GA-rich,Low_complexity,Low_complexity,1,40,0,30212721,30212759 +6 + chr15 30212783 30213132 chr15,30212783,30213132,-,MLT2D,LTR,ERVL,-56,358,1,30212727,30213132 -6 - chr15 30344307 30347357 chr15,30341196,30347357,-,L1PA3,LINE,L1,0,6155,7,30341196,30347363 +5 - chr15 30358103 30358468 chr15,30358103,30358468,+,L1ME4b,LINE,L1,3808,4201,-1945,30354296,30360413 -6 + chr15 30358554 30358739 chr15,30358554,30358739,+,L1ME4b,LINE,L1,4352,4550,-1596,30354203,30360335 -6 + chr15 30488002 30488311 chr15,30488002,30488311,-,AluY,SINE,Alu,-8,303,1,30487994,30488311 -6 - chr15 30489241 30489546 chr15,30489241,30489546,-,AluY,SINE,Alu,-7,304,1,30489234,30489546 -6 - chr15 30607695 30607719 chr15,30607603,30607719,+,L2a,LINE,L2,3299,3421,-5,30604305,30607724 -5 + chr15 30617567 30617694 chr15,30617567,30617694,-,MER131,DNA?,DNA?,-61,154,22,30617506,30617715 -6 - chr15 30625051 30625142 chr15,30625029,30625142,+,L3,LINE,CR1,2405,2529,-1570,30622625,30626712 -4 + chr15 30625167 30625286 chr15,30625167,30625286,-,L2a,LINE,L2,0,3426,3293,30625167,30628578 +6 - chr15 30649080 30649150 chr15,30649080,30649150,-,MER2,DNA,TcMar-Tigger,0,345,276,30649080,30649425 -6 - chr15 30927031 30927097 chr15,30927031,30927097,+,AluJb,SINE,Alu,3,68,-244,30927029,30927341 +6 + chr15 30927097 30927225 chr15,30927097,30927225,+,AluJb,SINE,Alu,172,299,-13,30926926,30927238 +6 + chr15 30928182 30928290 chr15,30928182,30928290,+,MER5A,DNA,hAT-Charlie,82,189,0,30928101,30928290 +6 + chr15 31219289 31219480 chr15,31219207,31219480,+,MLT2D,LTR,ERVL,92,362,-52,31219116,31219532 +2 + chr15 31219548 31219629 chr15,31219548,31219629,+,(TA)n,Simple_repeat,Simple_repeat,1,85,0,31219548,31219629 +6 + chr15 31219628 31219647 chr15,31219628,31219647,+,(TG)n,Simple_repeat,Simple_repeat,1,19,0,31219628,31219647 +6 + chr15 31219975 31220317 chr15,31219975,31220317,+,MER1B,DNA,hAT-Charlie,1,339,0,31219975,31220317 +6 + chr15 31220418 31220649 chr15,31220418,31220649,-,L1M5,LINE,L1,-1586,4560,4296,31218832,31224944 -6 - chr15 31220662 31220720 chr15,31220662,31220842,-,L1M6B,LINE,L1,-1401,1064,868,31219261,31221709 -5 - chr15 31222455 31222516 chr15,31222455,31222568,-,L1M6B,LINE,L1,-158,211,98,31222297,31222665 +2 - chr15 31222767 31223030 chr15,31222612,31223030,-,Tigger2,DNA,TcMar-Tigger,0,2718,2267,31222612,31225296 +5 - chr15 31223013 31223081 chr15,31223013,31223081,-,MER8,DNA,TcMar-Tigger,-169,70,1,31222844,31223081 +6 - chr15 32183429 32186475 chr15,32183429,32189574,+,L1PA3,LINE,L1,7,6155,0,32183423,32189574 +5 + chr15 32359613 32359658 chr15,32359613,32359737,+,MIRc,SINE,MIR,15,146,-122,32359599,32359859 +4 + chr15 32407193 32407217 chr15,32407193,32407316,-,L2c,LINE,L2,-216,3171,3054,32406977,32410369 +2 - chr15 32435193 32435233 chr15,32435193,32435254,+,(TG)n,Simple_repeat,Simple_repeat,1,61,0,32435193,32435254 -1 + chr15 32575571 32575643 chr15,32575529,32575824,-,AluSq2,SINE,Alu,-19,294,1,32575510,32575824 -5 - chr15 32613733 32613838 chr15,32613534,32613838,+,AluSg7,SINE,Alu,1,304,-5,32613534,32613843 +1 + chr15 32613860 32613998 chr15,32613860,32614055,+,L3,LINE,CR1,2154,2361,-1738,32611707,32615793 +4 + chr15 32614437 32614528 chr15,32614415,32614528,+,L3,LINE,CR1,2405,2529,-1570,32612011,32616098 -4 + chr15 32614553 32614672 chr15,32614553,32614672,-,L2a,LINE,L2,0,3426,3293,32614553,32617964 +6 - chr15 32656084 32656264 chr15,32656002,32656264,-,LTR88b,LTR,Gypsy?,-546,291,10,32655456,32656273 +5 - chr15 32669049 32669118 chr15,32669049,32669167,+,UCON132b,DNA,hAT-Tip100,1,129,-19,32669049,32669186 -1 + chr15 32717843 32717922 chr15,32717843,32717922,+,G-rich,Low_complexity,Low_complexity,1,79,0,32717843,32717922 -6 + chr15 33303657 33303757 chr15,33303612,33303757,-,Tigger14a,DNA,TcMar-Tigger,-89,235,81,33303523,33303837 +5 - chr15 33303781 33303883 chr15,33303781,33303883,+,MIR3,SINE,MIR,29,148,-60,33303753,33303943 -6 + chr15 33850665 33851178 chr15,33850665,33851452,-,L1ME3D,LINE,L1,-6,6236,5388,33850659,33856839 +1 - chr15 33856647 33856809 chr15,33856647,33856958,-,AluSc5,SINE,Alu,0,309,1,33856647,33856958 +1 - chr15 33972138 33972268 chr15,33972138,33972268,+,CR1-16_AMi,LINE,CR1,534,662,-189,33971605,33972457 -6 + chr15 33972502 33972515 chr15,33972502,33972557,+,(AAAAAC)n,Simple_repeat,Simple_repeat,1,53,0,33972502,33972557 -1 + chr15 34415450 34415536 chr15,34415449,34415536,-,Alu,SINE,Alu,-6,306,219,34415443,34415754 +5 - chr15 34415544 34415652 chr15,34415544,34415652,-,L1MB5,LINE,L1,-389,5785,5678,34415155,34421329 +6 - chr15 34415687 34416204 chr15,34415687,34416204,-,MLT1H2,LTR,ERVL-MaLR,0,489,22,34415687,34416225 +6 - chr15 34416234 34416448 chr15,34416234,34416448,-,HAL1,LINE,L1,-1449,1058,826,34414785,34417273 +6 - chr15 34416517 34416801 chr15,34416517,34416801,+,AluJo,SINE,Alu,1,285,-27,34416517,34416828 -6 + chr15 34416801 34416828 chr15,34416801,34416828,+,(AAAT)n,Simple_repeat,Simple_repeat,1,27,0,34416801,34416828 -6 + chr15 34417121 34417455 chr15,34417121,34417455,-,HAL1,LINE,L1,-2170,337,10,34414951,34417464 +6 - chr15 34417800 34418014 chr15,34417800,34418014,+,MER20,DNA,hAT-Charlie,1,219,0,34417800,34418014 -6 + chr15 34418130 34418147 chr15,34418130,34418147,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,34418130,34418147 -6 + chr15 34418898 34419203 chr15,34418898,34419203,-,AluSq2,SINE,Alu,-7,306,1,34418891,34419203 +6 - chr15 34419424 34419510 chr15,34419424,34419510,-,AluY,SINE,Alu,0,320,244,34419424,34419753 +6 - chr15 34419717 34420137 chr15,34419717,34420137,+,L1MB3,LINE,L1,5754,6181,-2,34413964,34420139 -6 + chr15 34651684 34651749 chr15,34651437,34651749,-,AluY,SINE,Alu,0,311,2,34651437,34651750 +4 - chr15 34811213 34811369 chr15,34811213,34811369,-,MER5B,DNA,hAT-Charlie,-6,172,1,34811207,34811369 -6 - chr15 34811381 34811556 chr15,34811381,34811556,-,MER5A,DNA,hAT-Charlie,-4,185,10,34811377,34811565 -6 - chr15 34811640 34811810 chr15,34811640,34811810,+,MIR,SINE,MIR,2,177,-85,34811639,34811895 +6 + chr15 34811834 34812090 chr15,34811834,34812090,-,AluSz6,SINE,Alu,-55,257,2,34811779,34812091 -6 - chr15 34812120 34812325 chr15,34812120,34812325,-,MIR,SINE,MIR,-41,221,3,34812079,34812327 -6 - chr15 34812874 34812923 chr15,34812874,34813351,+,LTR2B,LTR,ERV1,1,483,0,34812874,34813351 +5 + chr15 34978746 34979041 chr15,34978746,34979041,-,MER2B,DNA,TcMar-Tigger,0,336,1,34978746,34979041 -6 - chr15 34993646 34994022 chr15,34993360,34994087,-,LTR8,LTR,ERV1,0,691,1,34993360,34994087 -1 - chr15 34999902 35000000 chr15,34999780,35000000,-,AluJr4,SINE,Alu,-21,291,76,34999759,35000075 -1 - chr15 35000000 35000075 chr15,35000000,35000075,-,AluJr,SINE,Alu,-237,75,1,34999763,35000075 -6 - chr15 35000132 35000170 chr15,35000132,35000170,+,MLT2F,LTR,ERVL,5,39,-624,35000128,35000794 +6 + chr15 35000170 35000270 chr15,35000170,35000488,-,AluSc,SINE,Alu,0,309,1,35000170,35000488 -5 - chr15 35010914 35011165 chr15,35010914,35011165,+,MIR,SINE,MIR,3,257,-5,35010912,35011170 +6 + chr15 35099461 35099580 chr15,35099461,35099580,+,MIR,SINE,MIR,2,123,-139,35099460,35099719 -6 + chr15 35711707 35711777 chr15,35711622,35711777,+,MIR3,SINE,MIR,18,187,-21,35711605,35711798 +2 + chr15 35856477 35856530 chr15,35856306,35856593,-,AluJo,SINE,Alu,-31,281,2,35856275,35856594 -1 - chr15 35857987 35858107 chr15,35857954,35858107,-,L3,LINE,CR1,-1402,2697,2553,35856552,35860659 -2 - chr15 35858252 35858290 chr15,35858252,35858290,+,(TA)n,Simple_repeat,Simple_repeat,1,38,0,35858252,35858290 +6 + chr15 35939436 35939715 chr15,35939436,35939732,+,AluY,SINE,Alu,1,295,-16,35939436,35939748 -2 + chr15 35970358 35970426 chr15,35970214,35970426,-,L1ME4a,LINE,L1,0,6124,5911,35970214,35976336 +5 - chr15 36033193 36033255 chr15,36032835,36033408,+,L1ME3F,LINE,L1,3393,4000,-2146,36029443,36035554 -3 + chr15 36046221 36046285 chr15,36046221,36046335,+,MIR3,SINE,MIR,24,147,-61,36046198,36046396 +4 + chr15 36252192 36252257 chr15,36252074,36252450,-,THE1C,LTR,ERVL-MaLR,0,375,1,36252074,36252450 +1 - chr15 36341739 36342114 chr15,36341606,36342114,+,L1MDa,LINE,L1,288,848,-5785,36341319,36347899 +1 + chr15 36342110 36342395 chr15,36342110,36342395,+,L1MDa,LINE,L1,2891,3190,-3347,36339220,36345742 +6 + chr15 36342409 36342763 chr15,36342409,36342763,-,THE1D,LTR,ERVL-MaLR,-3,378,1,36342406,36342763 -6 - chr15 36342765 36342857 chr15,36342765,36342857,+,L1MEf,LINE,L1,381,474,-5949,36342385,36348806 +6 + chr15 36342945 36344166 chr15,36342945,36344311,+,L1MEf,LINE,L1,954,2516,-4521,36341992,36348832 +5 + chr15 36440047 36440470 chr15,36440047,36440470,-,LTR78,LTR,ERV1,-16,1280,832,36440031,36441301 +6 - chr15 36440953 36441372 chr15,36440953,36441372,+,L1MB8,LINE,L1,5291,5709,-475,36435663,36441847 -6 + chr15 36441374 36441543 chr15,36441374,36441543,+,L1MB8,LINE,L1,6009,6177,-1,36435366,36441544 -6 + chr15 36441623 36441694 chr15,36441623,36441733,-,LTR78,LTR,ERV1,-1181,115,3,36440442,36441735 +2 - chr15 36443537 36443547 chr15,36443099,36443547,+,HAL1ME,LINE,L1,1000,1518,-947,36442100,36444494 -5 + chr15 36443547 36443833 chr15,36443547,36443865,+,AluSx1,SINE,Alu,1,311,-1,36443547,36443866 -2 + chr15 36444194 36444464 chr15,36443865,36444464,+,HAL1ME,LINE,L1,1519,2150,-315,36442347,36444779 -4 + chr15 36641237 36641420 chr15,36641237,36641420,-,MLT1L,LTR,ERVL-MaLR,-72,538,351,36641165,36641770 +6 - chr15 37099804 37099848 chr15,37099804,37099848,+,A-rich,Low_complexity,Low_complexity,1,44,0,37099804,37099848 +6 + chr15 37365027 37365118 chr15,37364707,37365118,-,L1MC3,LINE,L1,0,7785,7361,37364707,37372478 +5 - chr15 37365120 37365174 chr15,37365120,37365235,-,MIR,SINE,MIR,-70,192,65,37365050,37365299 +2 - chr15 37366984 37367013 chr15,37366688,37367013,-,MLT1G1,LTR,ERVL-MaLR,-45,534,168,37366643,37367180 +4 - chr15 37984766 37984835 chr15,37984710,37984905,+,MLT1A0,LTR,ERVL-MaLR,165,361,-4,37984546,37984909 +1 + chr15 37993402 37993486 chr15,37993025,37994032,-,L1MB3,LINE,L1,-5299,1347,282,37987726,37994313 -1 - chr15 37994567 37994635 chr15,37994503,37994635,-,L3,LINE,CR1,-740,3359,3223,37993763,37997857 -2 - chr15 38004746 38004832 chr15,38003252,38004953,-,L1M1,LINE,L1,-5799,1766,24,37997453,38004976 -1 - chr15 38020192 38020228 chr15,38020000,38020228,-,AluJo,SINE,Alu,-20,292,79,38019980,38020306 -2 - chr15 38024681 38024909 chr15,38024304,38024909,-,MER76,LTR,ERVL,0,691,69,38024304,38024977 -2 - chr15 38024906 38025018 chr15,38024906,38025068,+,MLT1A0,LTR,ERVL-MaLR,204,365,0,38024703,38025068 +5 + chr15 38039996 38040270 chr15,38039765,38040270,-,MLT1E1A,LTR,ERVL-MaLR,-9,671,26,38039756,38040295 -2 - chr15 38040411 38040970 chr15,38040411,38040970,+,L1MB7,LINE,L1,5608,6184,0,38034804,38040970 +6 + chr15 38071656 38071737 chr15,38071656,38071737,-,L2a,LINE,L2,-1,3425,3339,38071655,38075075 +6 - chr15 38071739 38071899 chr15,38071739,38071899,+,AluJr4,SINE,Alu,134,281,-31,38071606,38071930 -6 + chr15 38071902 38071927 chr15,38071902,38071927,+,(TGT)n,Simple_repeat,Simple_repeat,1,25,0,38071902,38071927 -6 + chr15 38071928 38071982 chr15,38071928,38071982,-,L2a,LINE,L2,-90,3336,3285,38071838,38075266 +6 - chr15 38072159 38072257 chr15,38072159,38072257,-,MIRc,SINE,MIR,-112,156,64,38072047,38072320 +6 - chr15 38139595 38141748 chr15,38136665,38142840,-,L1PA3,LINE,L1,-1,6154,7,38136664,38142846 +5 - chr15 38142260 38142840 chr15,38136665,38142840,-,L1PA3,LINE,L1,-1,6154,7,38136664,38142846 +5 - chr15 38503563 38503599 chr15,38503563,38503599,-,MIRc,SINE,MIR,-33,235,201,38503530,38503799 -6 - chr15 38503824 38504941 chr15,38503824,38504941,-,Tigger3b,DNA,TcMar-Tigger,0,1231,1,38503824,38504941 -6 - chr15 38524090 38524103 chr15,38524090,38524103,-,L2,LINE,L2,-1043,2376,2365,38523047,38526467 -6 - chr15 38524103 38524248 chr15,38524103,38524248,+,FLAM_C,SINE,Alu,1,132,-1,38524103,38524249 +6 + chr15 38524248 38524444 chr15,38524248,38524890,-,L2,LINE,L2,-1055,2364,1670,38523193,38526559 -4 - chr15 38534188 38534252 chr15,38534115,38534252,-,MamTip2,DNA,hAT-Tip100,-4,301,169,38534111,38534420 -2 - chr15 38672738 38672757 chr15,38672738,38672839,-,MIRb,SINE,MIR,-81,187,69,38672657,38672907 -4 - chr15 38676394 38676454 chr15,38676342,38676761,+,L1MC3,LINE,L1,7355,7764,-21,38668988,38676782 +3 + chr15 38677787 38678008 chr15,38677698,38678359,-,HERV16-int,LTR,ERVL,-3382,1614,971,38674316,38679329 -5 - chr15 38688894 38689191 chr15,38688558,38689288,+,LTR8,LTR,ERV1,1,677,-14,38688558,38689302 +5 + chr15 38756641 38756764 chr15,38756641,38756843,+,MIRb,SINE,MIR,8,240,-28,38756634,38756871 -2 + chr15 38759036 38759137 chr15,38758992,38759137,-,MIRb,SINE,MIR,-71,197,51,38758921,38759187 +4 - chr15 38759085 38759210 chr15,38759085,38759210,+,MIRc,SINE,MIR,23,154,-114,38759063,38759324 -6 + chr15 38851603 38852558 chr15,38851603,38852558,-,L1PA5,LINE,L1,0,6154,5197,38851603,38857754 +6 - chr15 38852531 38853432 chr15,38852531,38853649,+,L1PA5,LINE,L1,4099,5217,-929,38848433,38854578 -1 + chr15 38867970 38868088 chr15,38867845,38868088,+,Tigger7,DNA,TcMar-Tigger,2,255,-2236,38867844,38870324 -4 + chr15 38868086 38868164 chr15,38868086,38868164,+,Tigger7,DNA,TcMar-Tigger,2412,2491,0,38865675,38868164 -6 + chr15 38868391 38868457 chr15,38868391,38869144,-,Charlie25,DNA,hAT-Charlie,-405,2119,1331,38867986,38870474 +2 - chr15 38886756 38886929 chr15,38886756,38887137,-,MLT1J2,LTR,ERVL-MaLR,0,448,5,38886756,38887141 +2 - chr15 39118650 39118713 chr15,39113911,39121297,+,L1PA16,LINE,L1,1,6867,-2,39113911,39121299 -1 + chr15 39169765 39169807 chr15,39169765,39169879,-,Plat_L3,LINE,CR1,-798,2788,2667,39168967,39172545 -5 - chr15 39176753 39176933 chr15,39175734,39177029,-,Charlie1,DNA,hAT-Charlie,-6,2775,1448,39175728,39178476 -1 - chr15 39179232 39179294 chr15,39179232,39179462,+,Charlie26a,DNA,hAT-Charlie,65,307,-18,39179168,39179480 +4 + chr15 39189333 39189393 chr15,39189333,39189393,-,MIRb,SINE,MIR,-15,253,195,39189318,39189587 +6 - chr15 39189422 39189567 chr15,39189422,39189567,+,MIRc,SINE,MIR,64,221,-47,39189359,39189614 -6 + chr15 39189567 39190166 chr15,39189567,39190215,-,L1ME3A,LINE,L1,-2,6171,5468,39189565,39195682 +2 - chr15 39300418 39300470 chr15,39300302,39300470,+,MER103C,DNA,hAT-Charlie,7,189,-108,39300296,39300578 -5 + chr15 39307196 39307284 chr15,39305910,39308595,-,L1MA8,LINE,L1,-4,6287,3516,39305906,39312110 +5 - chr15 39307963 39308595 chr15,39305910,39308595,-,L1MA8,LINE,L1,-4,6287,3516,39305906,39312110 +5 - chr15 39310617 39310685 chr15,39310460,39310685,-,MIR,SINE,MIR,-6,256,22,39310454,39310706 +4 - chr15 39419030 39419652 chr15,39418493,39419671,-,L1PB1,LINE,L1,0,6151,4961,39418493,39424631 +5 - chr15 39420570 39420975 chr15,39420570,39426588,+,L1PA2,LINE,L1,131,6155,0,39420440,39426588 -1 + chr15 39472703 39472722 chr15,39472555,39472722,-,MIRb,SINE,MIR,-75,193,15,39472480,39472736 -1 - chr15 39479264 39479378 chr15,39479264,39479414,+,MIR3,SINE,MIR,1,152,-78,39479264,39479492 +1 + chr15 39512428 39512494 chr15,39512428,39512494,+,MIRb,SINE,MIR,199,267,-1,39512230,39512495 -5 + chr15 39512556 39512639 chr15,39512556,39512998,-,LTR33,LTR,ERVL,0,515,1,39512556,39512998 +2 - chr15 39514075 39514165 chr15,39513906,39514165,-,MIR,SINE,MIR,-4,258,2,39513902,39514166 +1 - chr15 39586994 39587233 chr15,39586994,39587233,+,L1MA9,LINE,L1,6055,6312,0,39580940,39587233 +6 + chr15 39782996 39783199 chr15,39782996,39783199,+,MIRc,SINE,MIR,31,249,-19,39782966,39783218 +6 + chr15 39783366 39783433 chr15,39783366,39783433,-,MIRc,SINE,MIR,-13,255,188,39783353,39783620 -6 - chr15 39783542 39784004 chr15,39783542,39784004,+,L2a,LINE,L2,2306,3001,-425,39781237,39784429 +6 + chr15 39784004 39784784 chr15,39784004,39784784,-,MER99,DNA,hAT?,0,831,2,39784004,39784785 -6 - chr15 39784784 39784983 chr15,39784784,39784983,+,L2a,LINE,L2,3002,3230,-196,39781783,39785179 +6 + chr15 39785012 39785101 chr15,39785012,39785101,+,MIR3,SINE,MIR,67,158,-50,39784946,39785151 +6 + chr15 39785111 39785193 chr15,39785111,39785193,+,MER5B,DNA,hAT-Charlie,15,91,-87,39785097,39785280 +6 + chr15 39785198 39785361 chr15,39785198,39785361,-,MER5A1,DNA,hAT-Charlie,-5,161,2,39785193,39785362 -6 - chr15 39813223 39813626 chr15,39813096,39813631,-,L1MEf,LINE,L1,-4409,2693,2154,39808687,39815784 +5 - chr15 39814897 39814947 chr15,39814821,39815088,+,MIR,SINE,MIR,2,262,0,39814820,39815088 -3 + chr15 39922478 39922766 chr15,39922478,39922766,-,MLT1G3,LTR,ERVL-MaLR,-7,482,169,39922471,39922934 -6 - chr15 39922784 39922879 chr15,39922784,39922879,-,HY3,scRNA,scRNA,-2,99,6,39922782,39922884 -6 - chr15 39922898 39923099 chr15,39922898,39923099,-,MLT1G3,LTR,ERVL-MaLR,-388,207,1,39922510,39923099 -6 - chr15 39923146 39923448 chr15,39923146,39923448,+,AluSx1,SINE,Alu,1,305,-7,39923146,39923455 +6 + chr15 39923550 39923753 chr15,39923550,39923753,-,MLT1A0,LTR,ERVL-MaLR,0,365,171,39923550,39923923 -6 - chr15 39923786 39923918 chr15,39923786,39923918,-,FLAM_C,SINE,Alu,0,133,2,39923786,39923919 -6 - chr15 39923858 39923931 chr15,39923858,39923931,+,SVA_F,Retroposon,SVA,132,204,-1171,39923727,39925102 +6 + chr15 39923934 39924086 chr15,39923934,39924086,-,MLT1A0,LTR,ERVL-MaLR,-218,147,1,39923716,39924086 -6 - chr15 39924116 39924203 chr15,39924116,39924203,-,Charlie13b,DNA,hAT-Charlie,-327,185,96,39923789,39924298 -6 - chr15 39924393 39924939 chr15,39924393,39924939,+,MLT2B4,LTR,ERVL,1,555,-1,39924393,39924940 +5 + chr15 39925517 39925880 chr15,39925517,39925937,+,MLT1I,LTR,ERVL-MaLR,5,409,-2,39925513,39925939 +5 + chr15 40039381 40039448 chr15,40039381,40039609,+,MIR,SINE,MIR,28,262,0,40039354,40039609 +4 + chr15 40045961 40046069 chr15,40045950,40046105,+,MIRb,SINE,MIR,56,217,-51,40045895,40046156 +3 + chr15 40056730 40056778 chr15,40056676,40056778,-,L2c,LINE,L2,-5,3382,3292,40056671,40060069 -2 - chr15 40065228 40065333 chr15,40065228,40065333,+,MER91A,DNA,hAT-Tip100,84,194,-2,40065145,40065335 +6 + chr15 40065378 40065562 chr15,40065378,40065562,+,MER3,DNA,hAT-Charlie,15,209,0,40065364,40065562 +6 + chr15 40065509 40065574 chr15,40065509,40065574,-,MER3,DNA,hAT-Charlie,-108,101,33,40065401,40065606 -6 - chr15 40065589 40065706 chr15,40065589,40065706,+,L2a,LINE,L2,3310,3426,0,40062280,40065706 +5 + chr15 40065716 40065767 chr15,40065716,40065767,+,L2c,LINE,L2,3268,3318,-69,40062449,40065836 +6 + chr15 40065778 40065868 chr15,40065778,40065868,-,L1MB2,LINE,L1,-7,6164,6068,40065771,40071935 -6 - chr15 40065874 40065936 chr15,40065874,40065936,+,L2c,LINE,L2,3344,3410,-16,40062531,40065952 +6 + chr15 40066108 40066408 chr15,40066108,40066408,+,AluSz,SINE,Alu,1,305,-7,40066108,40066415 +6 + chr15 40066846 40067103 chr15,40066846,40067103,+,Charlie2a,DNA,hAT-Charlie,25,304,-2557,40066822,40069660 +6 + chr15 40067112 40067290 chr15,40067112,40067626,+,Charlie2b,DNA,hAT-Charlie,1793,2327,-455,40065320,40068081 +5 + chr15 40075204 40075338 chr15,40073950,40075338,-,LTR12C,LTR,ERV1,0,1579,1,40073950,40075338 +5 - chr15 40078658 40078669 chr15,40078531,40078669,+,L1M5,LINE,L1,5490,5629,-495,40073042,40079164 -4 + chr15 40078892 40079082 chr15,40078745,40079082,+,MLT1J2,LTR,ERVL-MaLR,64,433,-11,40078682,40079093 +1 + chr15 40079083 40079150 chr15,40079083,40079150,+,L1M5,LINE,L1,5619,5689,-435,40073465,40079585 +6 + chr15 40089210 40089229 chr15,40089176,40089229,+,(TGGAGG)n,Simple_repeat,Simple_repeat,1,56,0,40089176,40089229 +2 + chr15 40232082 40232272 chr15,40231979,40232272,-,MER1B,DNA,hAT-Charlie,-1,338,1,40231978,40232272 -1 - chr15 40232993 40233172 chr15,40232993,40233172,+,MIRb,SINE,MIR,70,255,-13,40232924,40233185 +6 + chr15 40233276 40233367 chr15,40233276,40233367,-,AluJb,SINE,Alu,-14,298,208,40233262,40233574 -6 - chr15 40233369 40233409 chr15,40233369,40233409,-,AluJb,SINE,Alu,-129,173,134,40233240,40233542 -6 - chr15 40233409 40233659 chr15,40233409,40233659,-,AluJo,SINE,Alu,-17,295,1,40233392,40233659 -6 - chr15 40234955 40235135 chr15,40234955,40235135,+,MIR3,SINE,MIR,16,202,-6,40234940,40235141 +6 + chr15 40235173 40235239 chr15,40235173,40235239,-,L2b,LINE,L2,0,3375,3311,40235173,40238549 -6 - chr15 40235536 40235591 chr15,40235536,40235591,+,MLT1K,LTR,ERVL-MaLR,20,76,-519,40235517,40236110 +6 + chr15 40245324 40245350 chr15,40245324,40245350,+,(CCTG)n,Simple_repeat,Simple_repeat,1,28,0,40245324,40245350 +6 + chr15 40245369 40245388 chr15,40245369,40245388,+,(GCA)n,Simple_repeat,Simple_repeat,1,19,0,40245369,40245388 +6 + chr15 40245635 40245816 chr15,40245635,40245816,-,MIR3,SINE,MIR,-14,194,13,40245621,40245828 -6 - chr15 40258501 40258544 chr15,40258339,40258544,+,MIRb,SINE,MIR,21,252,-16,40258319,40258560 +1 + chr15 40258514 40258552 chr15,40258514,40258552,+,L2b,LINE,L2,3326,3363,-12,40255189,40258564 +6 + chr15 40259503 40259810 chr15,40259503,40259810,+,AluSx,SINE,Alu,1,306,-6,40259503,40259816 +6 + chr15 40259810 40259948 chr15,40259810,40259948,-,L1ME4a,LINE,L1,-1,6123,5975,40259809,40265922 -6 - chr15 40260218 40260370 chr15,40260218,40260890,-,L1M5,LINE,L1,-1110,5036,4367,40259108,40265256 -5 - chr15 40285468 40285504 chr15,40285468,40285504,+,(TTGTT)n,Simple_repeat,Simple_repeat,1,37,0,40285468,40285504 -5 + chr15 40300670 40300754 chr15,40300331,40300754,+,L1MB7,LINE,L1,5535,5987,-197,40294797,40300951 +1 + chr15 40300845 40300959 chr15,40300845,40300959,+,MamSINE1,SINE,tRNA-RTE,163,288,-2,40300683,40300961 +6 + chr15 40313369 40313505 chr15,40313369,40313505,-,FLAM_A,SINE,Alu,-7,135,1,40313362,40313505 -6 - chr15 40313506 40313837 chr15,40313506,40313837,+,Plat_L3,LINE,CR1,2643,2978,-608,40310864,40314445 +6 + chr15 40313881 40313993 chr15,40313881,40313993,-,MER5A,DNA,hAT-Charlie,-2,187,73,40313879,40314065 -6 - chr15 40314020 40314152 chr15,40314020,40314152,-,FLAM_C,SINE,Alu,-10,133,1,40314010,40314152 -6 - chr15 40314210 40314393 chr15,40314210,40314393,+,L3,LINE,CR1,3537,3712,-387,40310674,40314780 +6 + chr15 40314456 40314746 chr15,40314456,40314746,+,AluSx,SINE,Alu,1,290,-22,40314456,40314768 +6 + chr15 40314798 40315215 chr15,40314798,40315215,-,LTR16,LTR,ERVL,-2,436,7,40314796,40315221 -6 - chr15 40315300 40316605 chr15,40315300,40316605,-,ERV3-16A3_I-int,LTR,ERVL,-91,5135,3766,40315209,40320370 -6 - chr15 40316605 40316634 chr15,40316605,40316801,+,AluJb,SINE,Alu,99,301,-11,40316507,40316812 +5 + chr15 40371825 40372002 chr15,40371745,40372002,-,L2c,LINE,L2,-10,3377,3110,40371735,40375111 -1 - chr15 40371994 40372045 chr15,40371994,40372045,-,MIR3,SINE,MIR,-3,205,153,40371991,40372197 -6 - chr15 40372045 40372122 chr15,40372045,40372263,-,Charlie15a,DNA,hAT-Charlie,0,224,1,40372045,40372263 -4 - chr15 40374398 40374429 chr15,40374209,40374429,-,AluY,SINE,Alu,-12,299,1,40374197,40374429 -1 - chr15 40374611 40374908 chr15,40374611,40374908,-,AluYj4,SINE,Alu,-14,297,1,40374597,40374908 -6 - chr15 40375340 40375676 chr15,40375340,40375676,+,L2a,LINE,L2,1276,1622,-1797,40374065,40377473 +6 + chr15 40375715 40375991 chr15,40375715,40376016,+,Charlie2a,DNA,hAT-Charlie,1,343,-2518,40375715,40378534 +5 + chr15 40453828 40453945 chr15,40453667,40454002,+,AluJb,SINE,Alu,1,312,0,40453667,40454002 -3 + chr15 40454284 40454330 chr15,40454284,40454330,+,(TGC)n,Simple_repeat,Simple_repeat,1,47,0,40454284,40454330 -6 + chr15 40488047 40488207 chr15,40488047,40488576,+,L1M3f,LINE,L1,3,572,-4756,40488045,40493332 +4 + chr15 40508024 40508067 chr15,40507827,40508150,+,L1ME2,LINE,L1,5653,6039,-125,40502175,40508275 +1 + chr15 40508332 40508444 chr15,40508297,40508496,-,AluJb,SINE,Alu,0,312,107,40508297,40508602 -3 - chr15 40557424 40557457 chr15,40557424,40557457,+,(AACTAA)n,Simple_repeat,Simple_repeat,1,33,0,40557424,40557457 +6 + chr15 40643176 40643306 chr15,40643176,40643463,-,AluY,SINE,Alu,-2,309,1,40643174,40643463 -4 - chr15 40646716 40646857 chr15,40646575,40646878,+,AluY,SINE,Alu,1,303,-8,40646575,40646886 +5 + chr15 40686724 40687051 chr15,40686077,40687051,-,MER11C,LTR,ERVK,-14,1057,1,40686063,40687051 +5 - chr15 40687051 40687146 chr15,40687051,40688045,-,HERVK11-int,LTR,ERVK,0,7953,6957,40687051,40695001 +5 - chr15 40687723 40687844 chr15,40687051,40688045,-,HERVK11-int,LTR,ERVK,0,7953,6957,40687051,40695001 +5 - chr15 40693741 40693870 chr15,40693584,40693870,-,AluJo,SINE,Alu,-26,286,7,40693558,40693876 +5 - chr15 40694062 40694347 chr15,40694062,40694347,-,AluSx,SINE,Alu,-23,289,1,40694039,40694347 +6 - chr15 40835808 40835937 chr15,40835711,40835937,-,L1ME4a,LINE,L1,-340,5784,5554,40835371,40841490 +5 - chr15 40835982 40836282 chr15,40835982,40836492,-,MLT1F2,LTR,ERVL-MaLR,-32,528,1,40835950,40836492 +5 - chr15 40838033 40838125 chr15,40838010,40838299,+,AluJr,SINE,Alu,1,289,-23,40838010,40838322 -3 + chr15 40838376 40838686 chr15,40838376,40838886,-,MLT1G1,LTR,ERVL-MaLR,0,579,2,40838376,40838887 +5 - chr15 40840427 40840493 chr15,40840427,40840590,-,L1ME4a,LINE,L1,-1,6123,5956,40840426,40846545 +1 - chr15 40874479 40874543 chr15,40874479,40874543,+,L1ME3G,LINE,L1,593,656,-268,40873887,40874811 +6 + chr15 40908829 40908944 chr15,40908634,40908944,-,AluJr,SINE,Alu,0,312,1,40908634,40908944 -2 - chr15 40909192 40909419 chr15,40909192,40909419,+,MIRb,SINE,MIR,5,245,-23,40909188,40909442 +6 + chr15 40999280 40999420 chr15,40999280,40999420,+,MIRb,SINE,MIR,93,236,-32,40999188,40999452 +6 + chr15 41011597 41011655 chr15,41011594,41011655,-,MER50,LTR,ERV1,-177,557,497,41011417,41012151 -1 - chr15 41013073 41013114 chr15,41013073,41013114,+,(AAC)n,Simple_repeat,Simple_repeat,1,41,0,41013073,41013114 +6 + chr15 41016807 41016835 chr15,41016693,41016965,-,AluJb,SINE,Alu,-13,299,30,41016680,41016994 -1 - chr15 41285320 41285686 chr15,41285320,41285686,-,LTR7,LTR,ERV1,0,450,1,41285320,41285686 -6 - chr15 41286383 41286434 chr15,41286383,41286690,+,AluSz,SINE,Alu,1,303,-9,41286383,41286699 +5 + chr15 41287353 41287420 chr15,41287119,41287420,-,AluSx,SINE,Alu,-10,302,1,41287109,41287420 -2 - chr15 41287420 41287474 chr15,41287420,41287677,-,L1MA9,LINE,L1,-481,5831,5582,41286939,41293258 -5 - chr15 41287962 41288235 chr15,41287944,41288235,-,AluSq2,SINE,Alu,-20,293,1,41287924,41288235 -2 - chr15 41288301 41288719 chr15,41288301,41288719,-,MLT1C,LTR,ERVL-MaLR,-1,466,1,41288300,41288719 -6 - chr15 41288790 41288906 chr15,41288790,41288906,+,FAM,SINE,Alu,23,140,-45,41288768,41288951 +6 + chr15 41288906 41289140 chr15,41288906,41289140,+,L1MB3,LINE,L1,5943,6180,-3,41282964,41289143 +6 + chr15 41290305 41290416 chr15,41290124,41290417,-,AluSq,SINE,Alu,-9,304,3,41290115,41290419 -3 - chr15 41296834 41297136 chr15,41296834,41297136,-,AluJo,SINE,Alu,-10,302,2,41296824,41297137 -6 - chr15 41297162 41297290 chr15,41297162,41297474,+,AluSz,SINE,Alu,1,312,0,41297162,41297474 +5 + chr15 41298613 41298908 chr15,41298613,41298908,+,AluSx1,SINE,Alu,1,296,-16,41298613,41298924 +5 + chr15 41299114 41299290 chr15,41299114,41299290,-,AluSx,SINE,Alu,-2,310,131,41299112,41299420 -6 - chr15 41300508 41300536 chr15,41300508,41300536,+,(AT)n,Simple_repeat,Simple_repeat,1,28,0,41300508,41300536 +6 + chr15 41300988 41301218 chr15,41300988,41301218,-,AluSz6,SINE,Alu,-30,282,53,41300958,41301270 -6 - chr15 41301970 41301999 chr15,41301970,41301999,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,41301970,41301999 +6 + chr15 41302213 41302521 chr15,41302213,41302521,+,AluSc,SINE,Alu,1,307,-2,41302213,41302523 +6 + chr15 41305238 41305496 chr15,41305238,41305496,-,AluSz6,SINE,Alu,-21,291,1,41305217,41305496 -6 - chr15 41308567 41308624 chr15,41308525,41308704,+,L2c,LINE,L2,3076,3247,-140,41305450,41308844 +3 + chr15 41308720 41308996 chr15,41308704,41308996,-,AluSz,SINE,Alu,-18,294,1,41308686,41308996 -2 - chr15 41308996 41309138 chr15,41308996,41309138,+,L2c,LINE,L2,3248,3383,-4,41305749,41309142 +6 + chr15 41343080 41343237 chr15,41343028,41343237,+,MIRc,SINE,MIR,2,241,-27,41343027,41343264 +1 + chr15 41343343 41343450 chr15,41343343,41343653,-,AluSx,SINE,Alu,-1,311,1,41343342,41343653 -4 - chr15 41344121 41344225 chr15,41343935,41344242,+,AluSz,SINE,Alu,1,311,-1,41343935,41344243 +5 + chr15 41609466 41609497 chr15,41609314,41609497,+,L2b,LINE,L2,3035,3263,-124,41606280,41609621 -5 + chr15 41609600 41609814 chr15,41609600,41609814,+,L2,LINE,L2,2396,2619,-800,41607205,41610614 -6 + chr15 41610144 41610200 chr15,41610097,41610310,-,L2c,LINE,L2,-4,3383,3183,41610093,41613492 +3 - chr15 41612535 41612727 chr15,41612419,41612820,-,MLT1H,LTR,ERVL-MaLR,-61,488,1,41612358,41612820 +1 - chr15 41770841 41770963 chr15,41770841,41771144,-,AluY,SINE,Alu,-10,301,1,41770831,41771144 +5 - chr15 41772431 41772649 chr15,41772347,41772649,+,AluSc5,SINE,Alu,1,305,-4,41772347,41772653 -1 + chr15 41894772 41894802 chr15,41894772,41894802,+,(GT)n,Simple_repeat,Simple_repeat,1,31,0,41894772,41894802 +6 + chr15 41895319 41895553 chr15,41895319,41895553,+,L2b,LINE,L2,2925,3179,-208,41892395,41895761 +6 + chr15 41908516 41908643 chr15,41908516,41908643,+,MER102b,DNA,hAT-Charlie,12,154,-187,41908505,41908830 -6 + chr15 41921604 41921682 chr15,41921604,41921682,-,MamRTE1,LINE,RTE-BovB,-3557,255,181,41918047,41921862 -6 - chr15 41926081 41926167 chr15,41926074,41926206,+,FLAM_C,SINE,Alu,1,133,-10,41926074,41926216 +3 + chr15 41928350 41928476 chr15,41928230,41928476,-,MIR,SINE,MIR,-10,252,4,41928220,41928479 -2 - chr15 41928489 41928506 chr15,41928489,41928595,+,L1ME4a,LINE,L1,6017,6124,0,41922473,41928595 +4 + chr15 41973804 41973903 chr15,41973733,41973903,+,MER5A,DNA,hAT-Charlie,7,183,-6,41973727,41973909 +2 + chr15 41973939 41973958 chr15,41973939,41974048,-,MER5A1,DNA,hAT-Charlie,-51,115,7,41973888,41974054 -4 - chr15 41997306 41997526 chr15,41997306,41997526,+,MIRb,SINE,MIR,22,260,-8,41997285,41997534 +6 + chr15 41998037 41998131 chr15,41998037,41998131,+,L2c,LINE,L2,3026,3127,-260,41995012,41998391 +6 + chr15 41998308 41998340 chr15,41998308,41998340,+,(AAT)n,Simple_repeat,Simple_repeat,1,33,0,41998308,41998340 +6 + chr15 41998341 41998549 chr15,41998341,41998549,-,MIRb,SINE,MIR,0,268,59,41998341,41998607 -6 - chr15 41998550 41998771 chr15,41998550,41998771,+,L1M4,LINE,L1,4842,5073,-1073,41993709,41999844 +6 + chr15 41998771 41999049 chr15,41998771,41999049,+,AluSz,SINE,Alu,1,282,-30,41998771,41999079 +6 + chr15 41999049 41999083 chr15,41999049,41999083,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,34,0,41999049,41999083 +6 + chr15 41999083 41999094 chr15,41999083,41999506,+,L1M4,LINE,L1,5074,5488,-685,41994010,42000191 +5 + chr15 42009832 42009901 chr15,42009763,42009901,+,L2c,LINE,L2,3038,3184,-203,42006726,42010104 +2 + chr15 42009995 42010038 chr15,42009995,42010038,+,(ACAGAT)n,Simple_repeat,Simple_repeat,1,44,0,42009995,42010038 +6 + chr15 42208489 42208684 chr15,42208489,42208705,+,MIRb,SINE,MIR,7,268,0,42208483,42208705 +1 + chr15 42208765 42208917 chr15,42208765,42208950,+,MER5A,DNA,hAT-Charlie,1,187,-2,42208765,42208952 +4 + chr15 42218919 42218953 chr15,42218550,42219526,-,L1MA8,LINE,L1,-268,6023,5023,42218282,42224548 -3 - chr15 42224408 42224558 chr15,42224363,42224640,+,MER68B,LTR,ERVL,254,564,0,42224110,42224640 +3 + chr15 42385679 42385719 chr15,42385567,42385719,-,MamTip3,DNA,hAT-Tip100,-340,160,10,42385227,42385728 -2 - chr15 42385849 42385919 chr15,42385849,42385919,+,L3b,LINE,CR1,4936,5007,-225,42380914,42386144 +6 + chr15 42402381 42402426 chr15,42402381,42402426,+,(CACACT)n,Simple_repeat,Simple_repeat,1,47,0,42402381,42402426 +6 + chr15 42404126 42404288 chr15,42404126,42404321,+,MIRb,SINE,MIR,15,223,-45,42404112,42404366 +5 + chr15 42532085 42532201 chr15,42532085,42532383,-,AluSg,SINE,Alu,-6,304,2,42532079,42532384 +2 - chr15 42532330 42532383 chr15,42532085,42532383,-,AluSg,SINE,Alu,-6,304,2,42532079,42532384 +4 - chr15 42567122 42567139 chr15,42567122,42567411,+,AluJb,SINE,Alu,6,293,-19,42567117,42567430 -2 + chr15 42569298 42569465 chr15,42569287,42569606,-,AluJb,SINE,Alu,0,312,1,42569287,42569606 +5 - chr15 42569562 42569606 chr15,42569287,42569606,-,AluJb,SINE,Alu,0,312,1,42569287,42569606 +5 - chr15 42726787 42726944 chr15,42726787,42726944,-,L3b,LINE,CR1,-255,4977,4806,42726532,42731749 -6 - chr15 42726968 42727167 chr15,42726968,42727167,-,MER58A,DNA,hAT-Charlie,-26,198,1,42726942,42727167 -6 - chr15 42740748 42740854 chr15,42740540,42740854,-,AluSc8,SINE,Alu,0,311,1,42740540,42740854 -1 - chr15 42742891 42742919 chr15,42742891,42742919,+,(AAACC)n,Simple_repeat,Simple_repeat,1,28,0,42742891,42742919 +6 + chr15 43185116 43185141 chr15,43185116,43185146,+,(AATG)n,Simple_repeat,Simple_repeat,1,33,0,43185116,43185146 -1 + chr15 43642389 43642476 chr15,43642363,43642476,+,MER104,DNA,TcMar-Tc2,66,179,-2,43642298,43642478 -5 + chr15 44387320 44387480 chr15,44387204,44387480,-,L1MB5,LINE,L1,-1551,4595,4317,44385653,44391796 +5 - chr15 44389966 44389979 chr15,44389677,44389979,-,AluJb,SINE,Alu,-8,304,1,44389669,44389979 +4 - chr15 44390001 44390062 chr15,44390001,44390062,+,(TTTATA)n,Simple_repeat,Simple_repeat,1,61,0,44390001,44390062 -6 + chr15 44390090 44390451 chr15,44390090,44390527,+,Helitron3Na_Mam,RC,Helitron,31,486,0,44390060,44390527 -1 + chr15 44516650 44516706 chr15,44516633,44516706,-,L2a,LINE,L2,-61,3365,3284,44516572,44519989 +5 - chr15 44516833 44516914 chr15,44516833,44517137,-,AluSg,SINE,Alu,-4,306,1,44516829,44517137 +2 - chr15 44517251 44517483 chr15,44517228,44517507,+,AluSx3,SINE,Alu,1,309,-2,44517228,44517509 -1 + chr15 44533499 44533760 chr15,44533499,44533760,-,AluSz,SINE,Alu,-47,265,1,44533452,44533760 +6 - chr15 44533760 44534055 chr15,44533760,44534055,-,AluSq2,SINE,Alu,-15,298,2,44533745,44534056 +6 - chr15 44534056 44534334 chr15,44534056,44534334,-,AluSz,SINE,Alu,-9,303,14,44534047,44534347 +6 - chr15 44534461 44534854 chr15,44534461,44534854,-,MLT2D,LTR,ERVL,0,414,3,44534461,44534856 +6 - chr15 44534947 44535047 chr15,44534947,44535047,-,L2a,LINE,L2,-6,3420,3304,44534941,44538350 +6 - chr15 44535087 44535364 chr15,44535087,44535364,-,AluJr,SINE,Alu,-15,297,1,44535072,44535364 +5 - chr15 44535760 44535860 chr15,44535555,44535860,-,AluSx1,SINE,Alu,-7,305,1,44535548,44535860 +4 - chr15 44558718 44558739 chr15,44558538,44558739,-,AluSx,SINE,Alu,-111,201,1,44558427,44558739 -2 - chr15 44559116 44559188 chr15,44559116,44559426,+,AluSx,SINE,Alu,1,298,-14,44559116,44559440 +5 + chr15 44778196 44778281 chr15,44777593,44778281,+,L1ME4c,LINE,L1,1722,2477,-4019,44775872,44782300 -5 + chr15 44778610 44778721 chr15,44778610,44778744,-,Charlie4z,DNA,hAT-Charlie,-2,165,17,44778608,44778760 +1 - chr15 45042367 45042488 chr15,45042209,45042490,+,AluSx,SINE,Alu,1,281,-31,45042209,45042521 -3 + chr15 45050506 45050666 chr15,45050380,45052138,-,LTR25-int,LTR,ERV1,-830,6358,3956,45049550,45056093 +3 - chr15 45058546 45058561 chr15,45057841,45058561,-,LTR25-int,LTR,ERV1,-6436,752,29,45051405,45058589 +4 - chr15 45058593 45058707 chr15,45058593,45059218,-,MER61F,LTR,ERV1,-23,653,2,45058570,45059219 +1 - chr15 45152768 45152897 chr15,45152768,45152897,-,MamTip2,DNA,hAT-Tip100,-81,224,80,45152687,45152976 +6 - chr15 45152939 45153217 chr15,45152939,45153247,+,AluSz,SINE,Alu,1,309,-3,45152939,45153250 -2 + chr15 45170462 45170534 chr15,45170462,45170636,-,MIR3,SINE,MIR,-7,201,16,45170455,45170651 -4 - chr15 45198605 45198677 chr15,45198605,45198677,-,tRNA-His-CAY_,tRNA,tRNA,-3,72,1,45198602,45198677 +6 - chr15 45199858 45199958 chr15,45199769,45199983,+,AluSx3,SINE,Alu,99,311,0,45199671,45199983 +5 + chr15 45200412 45200484 chr15,45200412,45200484,-,tRNA-His-CAY_,tRNA,tRNA,-3,72,1,45200409,45200484 +6 - chr15 45214448 45214472 chr15,45214033,45214472,-,L1MEc,LINE,L1,-1291,5715,5223,45212742,45219694 +5 - chr15 45214466 45214883 chr15,45214466,45214883,-,L1MEc,LINE,L1,-3300,3706,3261,45211166,45218143 +6 - chr15 45251761 45252042 chr15,45251761,45252042,-,AluJb,SINE,Alu,-8,304,11,45251753,45252052 +6 - chr15 45253725 45253752 chr15,45253725,45253752,+,(AAT)n,Simple_repeat,Simple_repeat,1,27,0,45253725,45253752 -6 + chr15 45255124 45255276 chr15,45254975,45255276,+,AluJb,SINE,Alu,3,305,-7,45254973,45255283 -5 + chr15 45255289 45255347 chr15,45255289,45255347,-,MER63D,DNA,hAT-Blackjack,-256,805,751,45255033,45256097 +6 - chr15 45255347 45255367 chr15,45255347,45255567,-,MER58A,DNA,hAT-Charlie,0,224,2,45255347,45255568 +2 - chr15 45255952 45256002 chr15,45255938,45256038,+,MIR,SINE,MIR,65,172,-90,45255874,45256128 -1 + chr15 45379476 45379691 chr15,45379476,45379691,+,MIRc,SINE,MIR,1,232,-36,45379476,45379727 +6 + chr15 45379705 45379839 chr15,45379705,45379839,+,AluSx1,SINE,Alu,1,136,-176,45379705,45380015 +6 + chr15 45379839 45380123 chr15,45379839,45380152,+,AluY,SINE,Alu,1,310,-1,45379839,45380153 +5 + chr15 45433613 45433689 chr15,45433577,45433689,-,L2,LINE,L2,-3119,300,189,45430458,45433877 +4 - chr15 45433689 45433985 chr15,45433689,45433985,+,AluY,SINE,Alu,1,297,-14,45433689,45433999 -6 + chr15 45433985 45434140 chr15,45433985,45434140,-,L2,LINE,L2,-3231,188,32,45430754,45434171 +6 - chr15 45441781 45441808 chr15,45441583,45442168,-,LTR66,LTR,ERVL,-2,608,1,45441581,45442168 +1 - chr15 45460446 45460715 chr15,45460438,45460715,-,AluJr4,SINE,Alu,-24,288,2,45460414,45460716 -2 - chr15 45476079 45476309 chr15,45476054,45476326,-,AluJb,SINE,Alu,-13,299,6,45476041,45476331 -3 - chr15 45477769 45478024 chr15,45477753,45478024,-,AluJb,SINE,Alu,-22,290,21,45477731,45478044 -2 - chr15 45478516 45478812 chr15,45478516,45478812,-,AluSx1,SINE,Alu,-15,297,2,45478501,45478813 -6 - chr15 45478839 45479055 chr15,45478839,45479055,-,MER58B,DNA,hAT-Charlie,0,341,98,45478839,45479152 -6 - chr15 45479055 45479335 chr15,45479055,45479335,-,AluJb,SINE,Alu,-30,282,3,45479025,45479337 -6 - chr15 45479335 45479420 chr15,45479335,45479420,-,MER58B,DNA,hAT-Charlie,-244,97,14,45479091,45479433 -6 - chr15 45497113 45497281 chr15,45497074,45497369,-,AluSx,SINE,Alu,-11,301,1,45497063,45497369 -5 - chr15 45512373 45512419 chr15,45512229,45512419,-,MER5A,DNA,hAT-Charlie,-11,178,1,45512218,45512419 -2 - chr15 45513698 45513767 chr15,45513473,45513967,+,L1M4,LINE,L1,2,518,-6999,45513472,45520966 +5 + chr15 45558651 45558880 chr15,45558651,45558880,-,AluJo,SINE,Alu,0,312,87,45558651,45558966 -6 - chr15 45558898 45558966 chr15,45558898,45559214,-,AluJo,SINE,Alu,-8,304,1,45558890,45559214 -4 - chr15 45562816 45562877 chr15,45562638,45562937,+,AluJb,SINE,Alu,1,308,-4,45562638,45562941 +5 + chr15 45585757 45585786 chr15,45585233,45585786,-,MER4D1,LTR,ERV1,-369,531,1,45584864,45585786 +5 - chr15 45585906 45586228 chr15,45585906,45586228,-,MLT1D,LTR,ERVL-MaLR,-13,492,130,45585893,45586357 +6 - chr15 45586229 45586304 chr15,45586229,45586328,-,AluSx3,SINE,Alu,-20,291,192,45586209,45586519 +1 - chr15 45702855 45703183 chr15,45702855,45703228,+,MLT1A,LTR,ERVL-MaLR,1,372,-2,45702855,45703230 +5 + chr15 45705133 45705153 chr15,45705133,45705153,+,(C)n,Simple_repeat,Simple_repeat,1,20,0,45705133,45705153 +6 + chr15 45706666 45706770 chr15,45706632,45706941,-,AluSx4,SINE,Alu,0,310,1,45706632,45706941 -3 - chr15 45776583 45776622 chr15,45776523,45776622,-,MIR3,SINE,MIR,-16,192,94,45776507,45776715 -2 - chr15 45926829 45926930 chr15,45926803,45926930,+,LTR33,LTR,ERVL,8,165,-350,45926796,45927280 +2 + chr15 45930948 45931022 chr15,45929318,45931022,-,L1MEc,LINE,L1,-880,5439,3786,45928438,45934807 -2 - chr15 45931022 45931069 chr15,45931022,45931246,+,L1MA2,LINE,L1,6087,6304,0,45924936,45931246 +5 + chr15 46804641 46804844 chr15,46804624,46806609,+,L1PA17,LINE,L1,4028,6017,-149,46800597,46806758 +5 + chr15 47359667 47359710 chr15,47359667,47359710,+,A-rich,Low_complexity,Low_complexity,1,43,0,47359667,47359710 -6 + chr15 47360026 47360050 chr15,47360026,47360050,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,47360026,47360050 -6 + chr15 47380457 47380497 chr15,47380127,47380497,-,Tigger13a,DNA,TcMar-Tigger,-40,731,349,47380087,47380845 +4 - chr15 47393322 47393485 chr15,47393234,47393765,+,LTR87,LTR,ERVL?,1,624,0,47393234,47393765 -3 + chr15 47395616 47395688 chr15,47395616,47395846,-,LTR102_Mam,LTR,ERVL,0,851,597,47395616,47396442 +2 - chr15 47396351 47396732 chr15,47396259,47396814,-,MLT2A2,LTR,ERVL,0,554,1,47396259,47396814 +1 - chr15 47527746 47527756 chr15,47527746,47527910,+,UCON97,DNA,DNA,124,302,-9,47527623,47527919 +5 + chr15 47604071 47604185 chr15,47604071,47604275,+,MamGypLTR1a,LTR,Gypsy,563,767,-17,47603509,47604292 -2 + chr15 47605282 47605352 chr15,47605009,47605371,-,MLT1F1,LTR,ERVL-MaLR,0,569,182,47605009,47605552 +3 - chr15 47803408 47803435 chr15,47803408,47803553,+,L3,LINE,CR1,757,918,-3181,47802652,47806734 -2 + chr15 47827572 47827616 chr15,47827572,47827652,+,MER2B,DNA,TcMar-Tigger,2,77,-259,47827571,47827911 -2 + chr15 47884408 47884475 chr15,47884408,47884475,-,MamRep4096,DNA,hAT-Tip100,-355,71,6,47884053,47884480 -6 - chr15 47944044 47944214 chr15,47943900,47944299,+,MLT1B,LTR,ERVL-MaLR,1,390,0,47943900,47944299 +1 + chr15 48048790 48048828 chr15,48048342,48048828,-,L1M5,LINE,L1,-1015,5131,4624,48047327,48053451 -2 - chr15 48048828 48049112 chr15,48048828,48049258,+,LTR16A,LTR,ERVL,1,451,0,48048828,48049258 +5 + chr15 48189037 48189051 chr15,48188968,48189051,+,L2c,LINE,L2,3265,3352,-23,48185704,48189074 -5 + chr15 48189068 48189188 chr15,48189068,48189188,+,MamRTE1,LINE,RTE-BovB,2856,2976,-836,48186213,48190024 -5 + chr15 48189244 48189509 chr15,48189244,48189527,+,MamRTE1,LINE,RTE-BovB,3108,3390,-422,48186137,48189949 -5 + chr15 48190040 48190107 chr15,48189800,48190107,-,AluSx1,SINE,Alu,-4,308,2,48189796,48190108 +4 - chr15 48190112 48190157 chr15,48190112,48190275,+,MER5A1,DNA,hAT-Charlie,2,166,0,48190111,48190275 -2 + chr15 48312626 48312741 chr15,48312626,48312959,+,AluJb,SINE,Alu,1,312,0,48312626,48312959 -2 + chr15 48314912 48314963 chr15,48314912,48314964,+,OldhAT1,DNA,hAT-Ac,246,294,-2554,48314667,48317518 -2 + chr15 48327566 48327831 chr15,48327441,48327831,+,L1MEd,LINE,L1,1621,2048,-5038,48325821,48332869 -5 + chr15 48327860 48328169 chr15,48327860,48328169,-,L2a,LINE,L2,-101,3325,3040,48327759,48331208 +6 - chr15 48328259 48328503 chr15,48328259,48328503,+,AluJb,SINE,Alu,1,284,-28,48328259,48328531 -6 + chr15 48328561 48328739 chr15,48328561,48328739,+,MIR,SINE,MIR,9,192,-70,48328553,48328809 -6 + chr15 48328739 48329038 chr15,48328739,48329038,-,AluJr,SINE,Alu,-19,293,1,48328720,48329038 +6 - chr15 48329040 48329344 chr15,48329040,48329344,-,AluSp,SINE,Alu,-8,305,1,48329032,48329344 +6 - chr15 48329344 48329392 chr15,48329344,48329392,+,MIR,SINE,MIR,193,235,-27,48329152,48329419 -6 + chr15 48329581 48329861 chr15,48329581,48329861,+,AluSp,SINE,Alu,1,300,-13,48329581,48329874 -6 + chr15 48330553 48330610 chr15,48330553,48330610,-,L2,LINE,L2,-1062,2357,2301,48329491,48332910 +6 - chr15 48529577 48529622 chr15,48529577,48529622,+,(CCTGAT)n,Simple_repeat,Simple_repeat,1,45,0,48529577,48529622 -6 + chr15 48650954 48651085 chr15,48650917,48651085,-,MIRc,SINE,MIR,-91,177,2,48650826,48651086 -2 - chr15 48651319 48651427 chr15,48651319,48651427,+,L2a,LINE,L2,3313,3421,-5,48648007,48651432 +6 + chr15 48651427 48651512 chr15,48651427,48651512,-,MamRTE1,LINE,RTE-BovB,-1600,2212,2126,48649827,48653637 -6 - chr15 48651688 48651730 chr15,48651688,48651730,+,(TTT)n,Simple_repeat,Simple_repeat,1,42,0,48651688,48651730 +6 + chr15 48651857 48651903 chr15,48651857,48651903,-,MIRb,SINE,MIR,-8,260,214,48651849,48652116 -6 - chr15 48729080 48729108 chr15,48728822,48729108,+,L2a,LINE,L2,3109,3417,-9,48725714,48729117 -5 + chr15 48729108 48729177 chr15,48729108,48729177,+,L1MEi,LINE,L1,1163,1230,-982,48727946,48730159 -6 + chr15 48729412 48729554 chr15,48729253,48729554,+,AluJr,SINE,Alu,1,296,-16,48729253,48729570 -4 + chr15 48729554 48729834 chr15,48729554,48729834,+,L1MC4,LINE,L1,7744,7983,-59,48721811,48729893 -6 + chr15 48783190 48783371 chr15,48783168,48783602,+,Tigger8,DNA,TcMar-Tigger,196,666,-1,48782973,48783603 +1 + chr15 48811624 48811711 chr15,48811624,48811711,-,L1ME4c,LINE,L1,-658,172,79,48810966,48811789 -6 - chr15 48945952 48946113 chr15,48945892,48946113,+,Tigger15a,DNA,TcMar-Tigger,500,715,0,48945393,48946113 +2 + chr15 49102108 49102210 chr15,49102108,49102408,-,AluSp,SINE,Alu,-6,307,1,49102102,49102408 -4 - chr15 49102942 49102995 chr15,49102685,49102995,+,AluSp,SINE,Alu,3,313,0,49102683,49102995 +2 + chr15 49344161 49344254 chr15,49344161,49344311,-,L1ME4c,LINE,L1,-9,821,663,49344152,49344973 -5 - chr15 49879604 49879761 chr15,49879564,49879761,+,MIRb,SINE,MIR,38,246,-22,49879527,49879783 +1 + chr15 49880027 49880091 chr15,49880027,49880091,-,MIRc,SINE,MIR,-76,192,127,49879951,49880217 -6 - chr15 49880166 49880472 chr15,49880166,49880642,-,L2a,LINE,L2,-172,3254,2740,49879994,49883381 -1 - chr15 49880585 49880642 chr15,49880166,49880642,-,L2a,LINE,L2,-172,3254,2740,49879994,49883381 -1 - chr15 49883500 49883525 chr15,49883500,49883683,-,MIR,SINE,MIR,0,262,65,49883500,49883747 -5 - chr15 50356790 50356900 chr15,50356790,50356900,-,L2,LINE,L2,-508,2911,2795,50356282,50359694 -6 - chr15 50357043 50357236 chr15,50357043,50357236,-,L2,LINE,L2,-833,2586,2388,50356210,50359623 -6 - chr15 50357234 50357411 chr15,50357234,50357411,-,L2a,LINE,L2,-4,3422,3240,50357230,50360650 -6 - chr15 50357411 50357697 chr15,50357411,50357697,+,AluSx,SINE,Alu,1,291,-21,50357411,50357718 +6 + chr15 50357697 50357948 chr15,50357697,50357948,-,L2a,LINE,L2,-187,3239,2940,50357510,50360887 -6 - chr15 50358013 50358330 chr15,50358013,50358330,+,AluY,SINE,Alu,1,307,-4,50358013,50358334 +6 + chr15 50358340 50358462 chr15,50358340,50358462,-,L2a,LINE,L2,-727,2692,2544,50357613,50361005 -6 - chr15 50358468 50358732 chr15,50358468,50358732,-,Charlie5,DNA,hAT-Charlie,-86,2538,2236,50358382,50360967 -6 - chr15 50358733 50358847 chr15,50358733,50358847,-,Charlie5,DNA,hAT-Charlie,-2501,123,1,50356232,50358847 -6 - chr15 50358850 50358994 chr15,50358850,50358994,-,L2,LINE,L2,-449,2970,2825,50358401,50361818 -6 - chr15 50359117 50359301 chr15,50359117,50359301,+,MER5C,DNA,hAT-Charlie,1,191,-122,50359117,50359423 +6 + chr15 50359450 50359605 chr15,50359301,50359605,-,AluSc,SINE,Alu,-6,303,1,50359295,50359605 +5 - chr15 50359301 50359605 chr15,50359301,50359605,-,AluSc,SINE,Alu,-6,303,1,50359295,50359605 -5 - chr15 50359607 50359732 chr15,50359607,50359920,-,AluSp,SINE,Alu,0,313,1,50359607,50359920 +2 - chr15 50359866 50359920 chr15,50359607,50359920,-,AluSp,SINE,Alu,0,313,1,50359607,50359920 +4 - chr15 50359607 50359920 chr15,50359607,50359920,-,AluSp,SINE,Alu,0,313,1,50359607,50359920 -6 - chr15 50359920 50359967 chr15,50359920,50359967,+,MER5C,DNA,hAT-Charlie,192,243,-70,50359729,50360037 -6 + chr15 50359920 50359967 chr15,50359920,50359967,+,MER5C,DNA,hAT-Charlie,192,243,-70,50359729,50360037 +6 + chr15 50360138 50360194 chr15,50360138,50360350,-,MIRb,SINE,MIR,-4,264,51,50360134,50360400 +1 - chr15 50360138 50360350 chr15,50360138,50360350,-,MIRb,SINE,MIR,-4,264,51,50360134,50360400 -1 - chr15 50360588 50360868 chr15,50360588,50360868,-,AluJb,SINE,Alu,-33,279,1,50360555,50360868 -6 - chr15 50360910 50360976 chr15,50360910,50360976,+,L1ME3B,LINE,L1,5258,5330,-843,50355653,50361819 +6 + chr15 50360976 50361277 chr15,50360976,50361277,+,AluSz,SINE,Alu,1,303,-9,50360976,50361286 +6 + chr15 50361277 50361584 chr15,50361277,50361584,+,L1ME3B,LINE,L1,5331,5604,-580,50355947,50362164 +6 + chr15 50361563 50361709 chr15,50361563,50361709,+,L1ME3B,LINE,L1,5928,6054,-119,50355636,50361828 +6 + chr15 50361717 50362024 chr15,50361717,50362024,+,MSTB1,LTR,ERVL-MaLR,1,367,-65,50361717,50362089 +6 + chr15 50362641 50362818 chr15,50362641,50362818,-,L2,LINE,L2,-960,2459,2279,50361681,50365096 -6 - chr15 50362877 50362982 chr15,50362877,50362982,-,MIRb,SINE,MIR,-14,254,139,50362863,50363120 -6 - chr15 50363112 50363155 chr15,50363112,50363155,-,L2,LINE,L2,-1356,2063,2022,50361756,50365176 -6 - chr15 50363278 50363389 chr15,50363278,50363389,-,MER113,DNA,hAT-Charlie,-191,330,121,50363087,50363509 -6 - chr15 50363389 50363684 chr15,50363389,50363684,-,AluJb,SINE,Alu,-17,295,1,50363372,50363684 -6 - chr15 50363684 50363799 chr15,50363684,50363799,-,MER113,DNA,hAT-Charlie,-401,120,1,50363283,50363799 -6 - chr15 50364600 50364906 chr15,50364600,50364906,-,AluSx,SINE,Alu,-2,310,1,50364598,50364906 -6 - chr15 50365724 50365926 chr15,50365724,50365926,+,AluJb,SINE,Alu,83,295,-17,50365642,50365943 +6 + chr15 50366185 50366297 chr15,50366185,50366297,+,MIR,SINE,MIR,90,220,-42,50366096,50366339 +6 + chr15 50366407 50366686 chr15,50366407,50366686,-,AluSx1,SINE,Alu,-24,288,9,50366383,50366694 -6 - chr15 50366753 50367056 chr15,50366753,50367056,-,AluJr,SINE,Alu,-22,290,1,50366731,50367056 -6 - chr15 50367220 50367501 chr15,50367220,50367501,+,AluSx1,SINE,Alu,28,307,-5,50367193,50367506 +5 + chr15 50368014 50368296 chr15,50368014,50368296,+,AluJo,SINE,Alu,2,299,-13,50368013,50368309 +6 + chr15 50368305 50368589 chr15,50368305,50368589,+,AluSq2,SINE,Alu,9,296,-17,50368297,50368606 +6 + chr15 50368596 50368888 chr15,50368596,50368888,+,AluSg,SINE,Alu,1,295,-15,50368596,50368903 +6 + chr15 50368923 50369231 chr15,50368923,50369231,+,MLT1A,LTR,ERVL-MaLR,57,374,0,50368867,50369231 +6 + chr15 50369499 50369798 chr15,50369499,50369798,+,AluSx,SINE,Alu,2,301,-11,50369498,50369809 +6 + chr15 50369803 50370107 chr15,50369803,50370107,+,AluSz6,SINE,Alu,1,300,-12,50369803,50370119 +6 + chr15 50370321 50370617 chr15,50370321,50370617,+,AluSz,SINE,Alu,3,301,-11,50370319,50370628 +6 + chr15 50370703 50370991 chr15,50370703,50370991,+,AluSx,SINE,Alu,1,289,-23,50370703,50371014 +6 + chr15 50370996 50371199 chr15,50370996,50371199,+,L1MC5,LINE,L1,9057,9284,-20,50361940,50371219 +6 + chr15 50371376 50371498 chr15,50371376,50371498,-,MIRb,SINE,MIR,-48,220,80,50371328,50371577 -6 - chr15 50371498 50371793 chr15,50371498,50371793,+,AluSx1,SINE,Alu,1,295,-17,50371498,50371810 +6 + chr15 50371793 50371875 chr15,50371793,50371875,-,MIRb,SINE,MIR,-189,79,3,50371604,50371877 -6 - chr15 50496897 50497030 chr15,50496807,50497030,+,L2b,LINE,L2,3126,3349,-26,50493682,50497056 -4 + chr15 50498335 50498479 chr15,50498335,50498479,+,MIR3,SINE,MIR,46,194,-14,50498290,50498493 -6 + chr15 50557654 50557698 chr15,50557654,50557943,-,AluSx,SINE,Alu,-22,290,1,50557632,50557943 -4 - chr15 50559999 50560034 chr15,50559777,50560034,+,AluSx3,SINE,Alu,46,303,-8,50559732,50560042 +2 + chr15 50742919 50742989 chr15,50742919,50742989,+,MER5A1,DNA,hAT-Charlie,1,73,-93,50742919,50743082 -6 + chr15 50742989 50743276 chr15,50742989,50743282,+,AluSx,SINE,Alu,1,294,-18,50742989,50743300 -1 + chr15 50746709 50746830 chr15,50746646,50746967,-,AluSq2,SINE,Alu,0,313,1,50746646,50746967 -1 - chr15 50839875 50840204 chr15,50839839,50840204,-,MLT1A0,LTR,ERVL-MaLR,-11,354,1,50839828,50840204 +5 - chr15 50840204 50840753 chr15,50840204,50840753,-,MLT1A0-int,LTR,ERVL-MaLR,0,1735,1177,50840204,50841929 +6 - chr15 50840962 50841001 chr15,50840962,50841001,-,MLT1-int,LTR,ERVL-MaLR,-591,898,860,50840371,50841860 +6 - chr15 50841004 50841319 chr15,50841004,50841319,-,AluY,SINE,Alu,0,311,1,50841004,50841319 +6 - chr15 50841328 50841634 chr15,50841328,50841634,-,MLT1-int,LTR,ERVL-MaLR,-639,732,435,50840689,50842068 +6 - chr15 50841634 50841756 chr15,50841634,50841938,+,AluSx1,SINE,Alu,1,299,-13,50841634,50841951 -2 + chr15 50852449 50852540 chr15,50852375,50852761,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,50852375,50852761 +3 - chr15 50860855 50860931 chr15,50860542,50861301,+,L2a,LINE,L2,2408,3158,-268,50858135,50861569 -1 + chr15 50874572 50874704 chr15,50873857,50874704,-,MER4B-int,LTR,ERV1,-5947,811,1,50867910,50874704 +4 - chr15 50874704 50874726 chr15,50874704,50875048,-,MER4E,LTR,ERV1,0,766,432,50874704,50875479 +2 - chr15 50890856 50890962 chr15,50890540,50890962,+,L1M3,LINE,L1,3111,3561,-2579,50887430,50893541 -4 + chr15 50890962 50891077 chr15,50890962,50891095,+,FLAM_C,SINE,Alu,1,133,-10,50890962,50891105 -2 + chr15 51037488 51037649 chr15,51031621,51037649,-,L1PA3,LINE,L1,0,6155,127,51031621,51037775 -1 - chr15 51037649 51037681 chr15,51037649,51037814,-,L1M1,LINE,L1,-7383,182,14,51030266,51037827 -4 - chr15 51293614 51293912 chr15,51293534,51294998,+,SVA_D,Retroposon,SVA,7,1046,-340,51293528,51295338 +5 + chr15 51316008 51316137 chr15,51316008,51316195,+,MIR3,SINE,MIR,20,205,-3,51315989,51316198 +4 + chr15 51320949 51321025 chr15,51320720,51321025,-,MER33,DNA,hAT-Charlie,0,324,1,51320720,51321025 -2 - chr15 51321949 51321976 chr15,51321949,51321976,+,A-rich,Low_complexity,Low_complexity,1,27,0,51321949,51321976 +6 + chr15 51367458 51367475 chr15,51367458,51367657,-,MamTip3,DNA,hAT-Tip100,-54,446,217,51367404,51367873 -4 - chr15 51414097 51414200 chr15,51413248,51415223,+,L1M1,LINE,L1,10,2044,-5521,51413239,51420744 +1 + chr15 51458894 51458919 chr15,51458894,51458919,+,(AGC)n,Simple_repeat,Simple_repeat,1,25,0,51458894,51458919 +6 + chr15 51695633 51695765 chr15,51695594,51695795,+,AluJo,SINE,Alu,122,312,0,51695473,51695795 -1 + chr15 51752519 51752663 chr15,51752519,51752663,+,MIR3,SINE,MIR,17,169,-39,51752503,51752702 +6 + chr15 51756378 51756475 chr15,51756378,51756589,-,MIRb,SINE,MIR,-3,265,26,51756375,51756614 -5 - chr15 51833377 51833426 chr15,51833377,51834548,-,L1ME2,LINE,L1,-1,6163,4887,51833376,51839434 -5 - chr15 51901019 51901123 chr15,51900843,51901546,-,L1MB7,LINE,L1,-16,6168,5400,51900827,51906945 +1 - chr15 52010999 52011242 chr15,52010988,52011242,+,Tigger17c,DNA,TcMar-Tigger,2,264,-924,52010987,52012166 -5 + chr15 52011229 52011372 chr15,52011229,52011372,-,FLAM_C,SINE,Alu,-90,211,1,52011139,52011372 +6 - chr15 52011372 52011466 chr15,52011372,52011754,+,Tigger17a,DNA,TcMar-Tigger,267,654,0,52011106,52011754 -2 + chr15 52017167 52017591 chr15,52017128,52017591,-,LTR7B,LTR,ERV1,0,464,1,52017128,52017591 +5 - chr15 52017591 52017671 chr15,52017591,52017671,+,MER110A,LTR,ERV1,366,452,-39,52017226,52017710 -6 + chr15 52018876 52018942 chr15,52018876,52018942,+,L2c,LINE,L2,3306,3371,-16,52015571,52018958 -6 + chr15 52018906 52018944 chr15,52018906,52018944,+,MIR,SINE,MIR,217,254,-8,52018690,52018952 -6 + chr15 52033707 52033768 chr15,52033178,52033768,+,MLT2B3,LTR,ERVL,1,554,0,52033178,52033768 +1 + chr15 52033768 52033961 chr15,52033768,52033961,-,L1MEf,LINE,L1,-4753,2797,2656,52029015,52036616 -6 - chr15 52033965 52034021 chr15,52033965,52034282,-,AluSq,SINE,Alu,0,313,3,52033965,52034284 -4 - chr15 52035560 52035625 chr15,52035354,52035651,+,AluSx4,SINE,Alu,1,308,-2,52035354,52035653 +5 + chr15 52056675 52057255 chr15,52056200,52057579,+,L2a,LINE,L2,1629,3169,-257,52054572,52057836 -5 + chr15 52086317 52086574 chr15,52086083,52086642,+,LTR26,LTR,ERV1,31,602,-1,52086053,52086643 +5 + chr15 52100470 52100523 chr15,52100279,52100861,-,MER73,LTR,ERVL,0,644,1,52100279,52100861 +1 - chr15 52116574 52116585 chr15,52116455,52116585,-,L1MA5,LINE,L1,-4,6296,6158,52116451,52122742 -1 - chr15 52116585 52116912 chr15,52116585,52116912,+,MER65A,LTR,ERV1,1,318,-127,52116585,52117039 +6 + chr15 52116912 52116968 chr15,52116912,52117229,-,AluY,SINE,Alu,-1,310,1,52116911,52117229 -4 - chr15 52121653 52121891 chr15,52121610,52121891,-,AluYc3,SINE,Alu,-15,285,1,52121595,52121891 -2 - chr15 52121891 52121902 chr15,52121891,52121902,+,(ATGAAT)n,Simple_repeat,Simple_repeat,6,17,0,52121886,52121902 +6 + chr15 52139604 52139713 chr15,52139481,52139713,-,MIR,SINE,MIR,-16,246,16,52139465,52139728 -2 - chr15 52180116 52180244 chr15,52180116,52180244,-,MIRb,SINE,MIR,-99,169,42,52180017,52180285 -1 - chr15 52180763 52180964 chr15,52180763,52180964,-,MIR,SINE,MIR,-21,241,35,52180742,52180998 -6 - chr15 53116365 53116458 chr15,53116204,53116486,+,MSTD,LTR,ERVL-MaLR,5,344,-52,53116200,53116538 +1 + chr15 53910769 53910869 chr15,53910295,53910869,+,LTR18B,LTR,ERVL,1,587,-27,53910295,53910896 +1 + chr15 53910904 53913193 chr15,53910904,53913193,+,HERVL18-int,LTR,ERVL,4,2452,-3595,53910901,53916788 +6 + chr15 53913192 53913434 chr15,53913192,53913434,+,HERVL18-int,LTR,ERVL,2720,2961,-3086,53910473,53916520 +6 + chr15 53913470 53914020 chr15,53913470,53914020,+,HERVL18-int,LTR,ERVL,2941,3491,-2556,53910530,53916576 +6 + chr15 53914208 53914712 chr15,53914208,53914772,+,LTR18B,LTR,ERVL,1,587,-27,53914208,53914799 +5 + chr15 53948339 53948608 chr15,53948339,53948627,+,AluSx1,SINE,Alu,6,298,-14,53948334,53948641 -2 + chr15 53974818 53974968 chr15,53974757,53975143,-,MLT1F1,LTR,ERVL-MaLR,-53,516,125,53974704,53975267 +1 - chr15 55056848 55056912 chr15,55056848,55056939,-,MIR3,SINE,MIR,-2,206,107,55056846,55057045 -4 - chr15 55087999 55088033 chr15,55087690,55088089,+,MLT1J2,LTR,ERVL-MaLR,7,425,-23,55087684,55088112 +1 + chr15 55091857 55091886 chr15,55091805,55091886,-,L2b,LINE,L2,-49,3326,3238,55091756,55095123 -2 - chr15 55092080 55092140 chr15,55092080,55092140,-,LTR88a,LTR,Gypsy?,-405,411,351,55091675,55092490 -6 - chr15 55092159 55092173 chr15,55092159,55092236,+,(TA)n,Simple_repeat,Simple_repeat,1,79,0,55092159,55092236 +5 + chr15 55173092 55173313 chr15,55173092,55173313,-,MER20,DNA,hAT-Charlie,0,219,2,55173092,55173314 +6 - chr15 55173427 55173584 chr15,55173427,55173584,-,L1M5,LINE,L1,-351,5773,5604,55173076,55179187 +6 - chr15 55173636 55173787 chr15,55173636,55173787,+,L2a,LINE,L2,3218,3426,0,55170419,55173787 -6 + chr15 55173980 55174276 chr15,55173980,55174276,+,AluSq,SINE,Alu,6,300,-13,55173975,55174289 -6 + chr15 55174659 55175012 chr15,55174659,55175012,-,MSTC,LTR,ERVL-MaLR,0,428,1,55174659,55175012 +6 - chr15 55175636 55175805 chr15,55175636,55175805,-,MER5B,DNA,hAT-Charlie,0,178,9,55175636,55175813 +6 - chr15 55176058 55176174 chr15,55176058,55176174,+,AluJr4,SINE,Alu,171,291,-21,55175888,55176195 -6 + chr15 55176467 55176521 chr15,55176467,55176521,+,L2a,LINE,L2,3373,3426,0,55173095,55176521 -6 + chr15 55177127 55177213 chr15,55177127,55177213,-,MIRb,SINE,MIR,-73,195,104,55177054,55177316 +6 - chr15 55177272 55177547 chr15,55177272,55177547,-,AluJr,SINE,Alu,-31,281,7,55177241,55177553 +6 - chr15 55346409 55346487 chr15,55346409,55346487,-,L1ME4b,LINE,L1,-94,798,722,55346315,55347208 +6 - chr15 55466970 55467019 chr15,55466970,55467019,+,(CTTTTTT)n,Simple_repeat,Simple_repeat,1,49,0,55466970,55467019 -6 + chr15 55681317 55681463 chr15,55681243,55681618,+,HAL1b,LINE,L1,1943,2346,-75,55679301,55681693 +5 + chr15 56248923 56249018 chr15,56248923,56249018,+,AmnSINE2,SINE,tRNA-Deu,80,176,-182,56248844,56249200 +6 + chr15 56248939 56249079 chr15,56248939,56249079,-,L2c,LINE,L2,-1,3386,3263,56248938,56252341 -6 - chr15 56394974 56396031 chr15,56394974,56396031,-,L1MB8,LINE,L1,-1,6177,5091,56394973,56401121 +6 - chr15 56396285 56396576 chr15,56396285,56396576,-,L1ME1,LINE,L1,-2,6177,5879,56396283,56402454 +6 - chr15 56396604 56396785 chr15,56396604,56396942,+,THE1B,LTR,ERVL-MaLR,1,364,0,56396604,56396942 -1 + chr15 56408483 56408916 chr15,56407675,56408916,+,L2a,LINE,L2,1388,2812,-607,56406288,56409523 -5 + chr15 56408916 56408930 chr15,56408916,56409210,+,AluY,SINE,Alu,2,296,-15,56408915,56409225 -2 + chr15 56409796 56410096 chr15,56409796,56410096,+,L2a,LINE,L2,3101,3425,-1,56406696,56410097 -4 + chr15 56410163 56410186 chr15,56410163,56410207,-,MIR3,SINE,MIR,-157,51,8,56410006,56410214 +1 - chr15 56447120 56447139 chr15,56447000,56447139,-,MER105,DNA,hAT-Charlie,-40,163,20,56446960,56447158 -1 - chr15 56447147 56447649 chr15,56447147,56447649,-,L1MEg,LINE,L1,-1328,4818,4266,56445819,56451914 -6 - chr15 56447649 56447697 chr15,56447649,56447781,-,L1MA10,LINE,L1,-10,6324,6191,56447639,56453971 -5 - chr15 56543559 56543812 chr15,56543449,56545300,-,L1MCa,LINE,L1,-4581,1927,1,56538868,56545300 +3 - chr15 56592720 56592852 chr15,56592617,56595937,+,L1MA4A,LINE,L1,2770,6161,-1401,56589848,56597338 -3 + chr15 56605376 56605483 chr15,56605122,56605505,-,L1M4,LINE,L1,-1377,4769,4380,56603745,56609884 +3 - chr15 56629386 56629400 chr15,56629356,56629572,-,Charlie10a,DNA,hAT-Charlie,0,242,34,56629356,56629605 +1 - chr15 56629515 56629572 chr15,56629356,56629572,-,Charlie10a,DNA,hAT-Charlie,0,242,34,56629356,56629605 +1 - chr15 56729975 56730138 chr15,56729975,56730138,+,Looper,DNA,PiggyBac,1388,1557,0,56728588,56730138 -6 + chr15 56795382 56795522 chr15,56795337,56795587,-,MLT1B,LTR,ERVL-MaLR,0,390,138,56795337,56795724 -5 - chr15 56888188 56888219 chr15,56888188,56888691,-,L2a,LINE,L2,0,3426,2926,56888188,56891616 -5 - chr15 57300365 57300572 chr15,57300291,57300572,-,AluSg,SINE,Alu,-13,297,17,57300278,57300588 -1 - chr15 57300572 57300621 chr15,57300572,57300621,+,MIRb,SINE,MIR,148,194,-74,57300425,57300695 +6 + chr15 57300904 57300924 chr15,57300904,57301111,+,L1MC5a,LINE,L1,2561,2774,-3,57298344,57301114 +4 + chr15 57304725 57304910 chr15,57304562,57304910,-,L1MD3,LINE,L1,-338,7657,7302,57304224,57312211 -1 - chr15 57304902 57304949 chr15,57304902,57304949,-,L1MD3,LINE,L1,-758,7124,7078,57304144,57312026 -6 - chr15 57304960 57305069 chr15,57304960,57305069,+,MIRb,SINE,MIR,111,223,-45,57304850,57305114 +6 + chr15 57305438 57305489 chr15,57305438,57305489,+,L2a,LINE,L2,3371,3421,-5,57302068,57305494 +6 + chr15 57305512 57305560 chr15,57305512,57305560,+,MIR1_Amn,SINE,MIR,27,72,-158,57305486,57305718 +6 + chr15 57305562 57305880 chr15,57305562,57305880,-,AluSx,SINE,Alu,0,312,1,57305562,57305880 -6 - chr15 57305905 57305969 chr15,57305905,57305969,+,MIR3,SINE,MIR,66,132,-136,57305840,57306105 +6 + chr15 57307367 57307601 chr15,57307367,57307601,+,ORSL,DNA,hAT-Tip100,30,275,0,57307338,57307601 +6 + chr15 57307654 57307769 chr15,57307654,57307873,-,MamRep564,Unknown,Unknown,-69,288,62,57307585,57307934 -5 - chr15 57322905 57322942 chr15,57322849,57322942,-,L2,LINE,L2,-557,2862,2766,57322292,57325707 -2 - chr15 57323042 57323127 chr15,57323042,57323305,-,L2,LINE,L2,-650,2769,2478,57322392,57325782 -4 - chr15 57528986 57529009 chr15,57528986,57529117,-,MIR3,SINE,MIR,-3,205,76,57528983,57529192 +1 - chr15 57554183 57554358 chr15,57554183,57554358,-,MIRb,SINE,MIR,-64,204,16,57554119,57554373 -6 - chr15 57555570 57555680 chr15,57555570,57555873,-,L1ME3Cz,LINE,L1,-64,933,636,57555506,57556508 -5 - chr15 57720385 57720463 chr15,57720385,57720463,-,MIR1_Amn,SINE,MIR,-108,122,35,57720277,57720497 -6 - chr15 57990371 57990535 chr15,57990371,57990535,+,L1ME3G,LINE,L1,433,599,-325,57989939,57990860 -6 + chr15 57990592 57990636 chr15,57990592,57990894,+,AluSq,SINE,Alu,1,302,-11,57990592,57990905 -1 + chr15 58065672 58065722 chr15,58065672,58065722,+,(GCCCGCG)n,Simple_repeat,Simple_repeat,1,51,0,58065672,58065722 +6 + chr15 58434987 58435355 chr15,58434987,58435355,-,Charlie1,DNA,hAT-Charlie,-34,2747,2363,58434953,58437717 +6 - chr15 58435530 58435628 chr15,58435530,58435628,+,MER97a,DNA,hAT-Tip100,45,160,-730,58435486,58436358 -6 + chr15 58435628 58435918 chr15,58435628,58435918,+,AluSq2,SINE,Alu,2,291,-22,58435627,58435940 -6 + chr15 58435918 58436654 chr15,58435918,58436654,+,MER97a,DNA,hAT-Tip100,161,890,0,58435758,58436654 -6 + chr15 58436750 58436806 chr15,58436750,58436806,-,L2c,LINE,L2,-221,3166,3108,58436529,58439913 +6 - chr15 58454832 58454982 chr15,58454832,58455195,+,MER63C,DNA,hAT-Blackjack,31,407,-523,58454802,58455718 +5 + chr15 58494773 58494883 chr15,58494693,58494951,-,MamRep434,DNA,TcMar-Tigger,-133,293,33,58494560,58494983 +3 - chr15 58498722 58498735 chr15,58498722,58498792,+,MIRc,SINE,MIR,11,79,-129,58498712,58498921 -1 + chr15 58521311 58521604 chr15,58521285,58521604,-,L2c,LINE,L2,-46,3341,2937,58521239,58524540 -1 - chr15 58587641 58587875 chr15,58587641,58587875,+,Charlie7a,DNA,hAT-Charlie,1,260,-12,58587641,58587887 +6 + chr15 58587875 58587912 chr15,58587875,58588142,+,AluJr,SINE,Alu,2,299,-13,58587874,58588155 +4 + chr15 58591541 58591562 chr15,58591431,58591562,-,FLAM_C,SINE,Alu,-12,131,1,58591419,58591562 -2 - chr15 58591577 58591676 chr15,58591577,58592623,-,L1MC5,LINE,L1,-19,9285,8469,58591558,58601091 -5 - chr15 58768203 58768879 chr15,58768203,58769165,+,LTR13A,LTR,ERVK,1,966,0,58768203,58769165 -2 + chr15 58815340 58815646 chr15,58815340,58815646,-,AluJb,SINE,Alu,-2,310,2,58815338,58815647 -6 - chr15 58815673 58815726 chr15,58815673,58815977,-,AluSc,SINE,Alu,-2,307,1,58815671,58815977 -4 - chr15 58817658 58817728 chr15,58817447,58817746,+,AluSx1,SINE,Alu,5,307,-5,58817443,58817751 +5 + chr15 58864739 58864783 chr15,58864734,58864783,-,MIR,SINE,MIR,-159,103,55,58864575,58864837 +4 - chr15 58889987 58890037 chr15,58889987,58890037,-,MIR3,SINE,MIR,-132,76,24,58889855,58890060 -6 - chr15 58894061 58894082 chr15,58894061,58894083,+,(AAAT)n,Simple_repeat,Simple_repeat,1,24,0,58894061,58894083 +5 + chr15 59115723 59116027 chr15,59115723,59116027,-,AluJb,SINE,Alu,-8,304,5,59115715,59116031 +6 - chr15 59121073 59121321 chr15,59121073,59121321,+,L1MC4,LINE,L1,7781,8040,-2,59113293,59121323 +6 + chr15 59121514 59121565 chr15,59121514,59121649,+,AluJo,SINE,Alu,1,131,-181,59121514,59121830 +4 + chr15 59133150 59133250 chr15,59133102,59133381,+,AluJo,SINE,Alu,5,292,-20,59133098,59133401 +5 + chr15 59266720 59266915 chr15,59266646,59266960,-,AluY,SINE,Alu,0,311,1,59266646,59266960 +5 - chr15 59270911 59270923 chr15,59270644,59270923,-,AluSz,SINE,Alu,-18,294,33,59270626,59270955 +4 - chr15 59348648 59348861 chr15,59348635,59348930,-,AluSx,SINE,Alu,-16,296,1,59348619,59348930 +5 - chr15 59359607 59359622 chr15,59359498,59359622,+,AluJr,SINE,Alu,1,124,-188,59359498,59359810 -4 + chr15 59359630 59359654 chr15,59359630,59359654,+,(GGGA)n,Simple_repeat,Simple_repeat,1,24,0,59359630,59359654 -6 + chr15 59672280 59672302 chr15,59672280,59672544,-,AluJb,SINE,Alu,-19,293,28,59672261,59672571 +1 - chr15 59689361 59689412 chr15,59689361,59689412,+,(GGC)n,Simple_repeat,Simple_repeat,1,53,0,59689361,59689412 +6 + chr15 60073554 60073889 chr15,60073506,60073889,-,MLT1B,LTR,ERVL-MaLR,0,390,1,60073506,60073889 +5 - chr15 60479376 60479398 chr15,60479376,60479559,+,MIR,SINE,MIR,72,252,-10,60479305,60479569 +4 + chr15 60519966 60520048 chr15,60519857,60520048,+,MARNA,DNA,TcMar-Mariner,325,526,-60,60519533,60520108 +2 + chr15 60528707 60528727 chr15,60528707,60528951,-,MIR,SINE,MIR,-1,267,2,60528706,60528952 -4 - chr15 60544883 60544918 chr15,60544883,60544918,+,(AGGCCA)n,Simple_repeat,Simple_repeat,1,37,0,60544883,60544918 +6 + chr15 60547718 60547943 chr15,60547625,60547943,+,MARNA,DNA,TcMar-Mariner,244,563,-23,60547382,60547966 +2 + chr15 60598448 60598512 chr15,60598335,60598769,+,Tigger2a,DNA,TcMar-Tigger,2,434,0,60598334,60598769 +3 + chr15 60600971 60601057 chr15,60600876,60601097,-,MIR,SINE,MIR,-25,237,8,60600851,60601104 -3 - chr15 60686727 60686858 chr15,60686722,60686858,+,MamRTE1,LINE,RTE-BovB,1470,1620,-2192,60685253,60689050 +5 + chr15 60847757 60847880 chr15,60847559,60847880,+,MER33,DNA,hAT-Charlie,2,324,0,60847558,60847880 -5 + chr15 60848206 60848544 chr15,60848206,60848544,+,MLT1D,LTR,ERVL-MaLR,1,390,-115,60848206,60848659 -6 + chr15 60848544 60848927 chr15,60848544,60848927,-,MSTA,LTR,ERVL-MaLR,0,428,1,60848544,60848927 +6 - chr15 60848927 60849037 chr15,60848927,60849037,+,MLT1D,LTR,ERVL-MaLR,391,505,0,60848537,60849037 -6 + chr15 61182937 61183082 chr15,61182619,61183238,+,L1MC4a,LINE,L1,7224,7865,-17,61175396,61183255 +3 + chr15 61195912 61195938 chr15,61195912,61196068,-,MIRb,SINE,MIR,-12,256,85,61195900,61196152 -5 - chr15 61213784 61213854 chr15,61213778,61213854,+,L2b,LINE,L2,3296,3372,-3,61210483,61213857 +2 + chr15 61239907 61239950 chr15,61239907,61239950,+,(TGTATTT)n,Simple_repeat,Simple_repeat,1,43,0,61239907,61239950 +6 + chr15 61298791 61298919 chr15,61298724,61298919,-,MIR3,SINE,MIR,-33,235,21,61298691,61298939 +5 - chr15 61299667 61300261 chr15,61299667,61300261,+,L1MC1,LINE,L1,5383,5975,-358,61294285,61300619 -6 + chr15 61300261 61300539 chr15,61300261,61300561,+,AluSx3,SINE,Alu,1,300,-11,61300261,61300572 -2 + chr15 61400382 61400431 chr15,61400164,61400474,+,MLT1A,LTR,ERVL-MaLR,27,340,-34,61400138,61400508 -3 + chr15 61507178 61507240 chr15,61506779,61507302,-,MLT1F2,LTR,ERVL-MaLR,-5,555,1,61506774,61507302 +3 - chr15 61604763 61604852 chr15,61604763,61604852,-,L2c,LINE,L2,-13,3374,3286,61604750,61608137 -6 - chr15 61730582 61730641 chr15,61730474,61730641,+,MamTip2,DNA,hAT-Tip100,54,257,-48,61730421,61730689 +2 + chr15 61849401 61849472 chr15,61849401,61849510,+,MIR3,SINE,MIR,16,142,-66,61849386,61849576 +4 + chr15 61851856 61851869 chr15,61851618,61851869,-,MamTip1,DNA,hAT-Tip100,0,267,1,61851618,61851869 -2 - chr15 61851869 61852152 chr15,61851869,61852184,-,LTR16B2,LTR,ERVL,-113,349,39,61851756,61852222 -5 - chr15 62060930 62061095 chr15,62060930,62061095,-,AluJo,SINE,Alu,0,312,148,62060930,62061242 -6 - chr15 62061941 62062105 chr15,62061941,62062105,+,L2,LINE,L2,2698,2862,-557,62059244,62062662 +6 + chr15 62196145 62196452 chr15,62196144,62196452,-,AluSg,SINE,Alu,-1,309,1,62196143,62196452 +5 - chr15 62196559 62196599 chr15,62196559,62196599,-,U2,snRNA,snRNA,-148,40,1,62196411,62196599 +6 - chr15 62196929 62197046 chr15,62196768,62197079,+,L1ME4a,LINE,L1,5755,6117,-7,62191014,62197086 -3 + chr15 62201757 62201910 chr15,62201599,62201910,+,AluSq2,SINE,Alu,4,311,-2,62201596,62201912 -4 + chr15 62201910 62202332 chr15,62201910,62202332,+,L1M4,LINE,L1,5037,5473,-831,62196874,62203163 -6 + chr15 62202957 62203020 chr15,62202957,62203020,-,MIR3,SINE,MIR,-67,141,77,62202890,62203096 +6 - chr15 62203259 62203318 chr15,62203259,62203356,-,Charlie4z,DNA,hAT-Charlie,-3,164,70,62203256,62203425 +1 - chr15 62230384 62230516 chr15,62230172,62230516,-,L2c,LINE,L2,-79,3308,2921,62230093,62233436 +5 - chr15 62231434 62231531 chr15,62231295,62231531,+,MIR,SINE,MIR,21,262,0,62231275,62231531 -4 + chr15 62274163 62274178 chr15,62273987,62274178,+,L1ME4a,LINE,L1,5535,5651,-473,62268453,62274651 +1 + chr15 62274855 62275300 chr15,62274846,62275300,-,L1MC4a,LINE,L1,-1824,6058,5703,62273022,62281002 -1 - chr15 62275475 62275697 chr15,62275475,62275697,+,L1ME4a,LINE,L1,5898,6124,0,62269578,62275697 +6 + chr15 62275811 62275927 chr15,62275811,62275927,-,AluJo,SINE,Alu,-197,115,1,62275614,62275927 -6 - chr15 62276311 62276331 chr15,62276311,62276331,+,(TTTTTAT)n,Simple_repeat,Simple_repeat,1,43,-31,62276311,62276362 +6 + chr15 62276331 62276372 chr15,62276331,62276372,+,(TGATTT)n,Simple_repeat,Simple_repeat,1,41,0,62276331,62276372 +6 + chr15 62276372 62276384 chr15,62276372,62276384,+,(TTTTTAT)n,Simple_repeat,Simple_repeat,44,74,0,62276329,62276384 +6 + chr15 62276422 62276544 chr15,62276422,62276544,+,L2c,LINE,L2,3033,3153,-234,62273390,62276778 +6 + chr15 62276577 62276735 chr15,62276577,62276735,-,L2a,LINE,L2,0,3426,3262,62276577,62279996 -6 - chr15 62277434 62277545 chr15,62277434,62277545,-,MIRb,SINE,MIR,-113,155,42,62277321,62277586 -6 - chr15 62277771 62277901 chr15,62277771,62277901,+,L2c,LINE,L2,3287,3426,0,62274485,62277901 +6 + chr15 62277966 62278174 chr15,62277966,62278174,+,Tigger17c,DNA,TcMar-Tigger,1,210,-978,62277966,62279152 +6 + chr15 62278199 62278365 chr15,62278199,62278387,+,MIRb,SINE,MIR,1,191,-77,62278199,62278464 +5 + chr15 62284190 62284315 chr15,62284165,62284470,-,AluSc,SINE,Alu,-5,304,1,62284160,62284470 -1 - chr15 62284930 62285006 chr15,62284930,62285272,-,L1M5,LINE,L1,-2982,3164,2788,62281948,62288059 -5 - chr15 62388428 62388536 chr15,62388428,62388536,-,L2a,LINE,L2,-5,3421,3307,62388423,62391842 +6 - chr15 62638549 62638618 chr15,62638549,62638672,+,MIRb,SINE,MIR,68,196,-12,62638482,62638684 -2 + chr15 62687884 62687927 chr15,62687884,62688141,+,HAL1,LINE,L1,2246,2507,0,62685639,62688141 -2 + chr15 62690245 62690448 chr15,62689894,62691060,-,SVA_D,Retroposon,SVA,-517,870,5,62689377,62691064 +1 - chr15 62827778 62827867 chr15,62827778,62827867,-,MIR,SINE,MIR,-3,259,157,62827775,62828023 +6 - chr15 62827983 62828029 chr15,62827983,62828029,+,(TCCACT)n,Simple_repeat,Simple_repeat,1,47,0,62827983,62828029 -6 + chr15 62828790 62828907 chr15,62828790,62828907,-,L2c,LINE,L2,0,3387,3278,62828790,62832184 +6 - chr15 62828979 62829061 chr15,62828979,62829061,+,MER5A1,DNA,hAT-Charlie,57,137,-29,62828923,62829090 -6 + chr15 62829078 62829102 chr15,62829078,62829102,+,(ATTT)n,Simple_repeat,Simple_repeat,1,24,0,62829078,62829102 -6 + chr15 62829122 62829148 chr15,62829122,62829148,-,L1MA1,LINE,L1,-1,6301,6261,62829121,62835408 +6 - chr15 62829148 62829185 chr15,62829148,62829185,+,(TA)n,Simple_repeat,Simple_repeat,1,40,0,62829148,62829185 -6 + chr15 62829185 62829212 chr15,62829185,62829212,-,L1MA1,LINE,L1,-42,6260,6239,62829143,62835450 +6 - chr15 62829212 62829573 chr15,62829212,62829573,-,THE1B,LTR,ERVL-MaLR,0,364,1,62829212,62829573 +6 - chr15 62829573 62829991 chr15,62829573,62829991,-,L1MA1,LINE,L1,-64,6238,5806,62829509,62835796 +6 - chr15 62831317 62831346 chr15,62831317,62831346,+,MIRc,SINE,MIR,120,148,-120,62831198,62831466 -6 + chr15 62831318 62831402 chr15,62831318,62831402,+,MIR3,SINE,MIR,118,196,-12,62831201,62831414 -6 + chr15 62831971 62832187 chr15,62831971,62832187,+,MIRb,SINE,MIR,38,246,-22,62831934,62832209 -6 + chr15 62832207 62832297 chr15,62832207,62832297,+,L1MB4,LINE,L1,6082,6172,-8,62826126,62832305 -6 + chr15 62833125 62833213 chr15,62833125,62833213,+,L1MB4,LINE,L1,6068,6179,-1,62827058,62833214 -6 + chr15 62898676 62898904 chr15,62898676,62898904,+,MIRb,SINE,MIR,20,268,0,62898657,62898904 +6 + chr15 63046034 63046288 chr15,63045995,63046288,-,Tigger3a,DNA,TcMar-Tigger,0,348,3,63045995,63046290 +5 - chr15 63046756 63046919 chr15,63046756,63046919,+,MER5B,DNA,hAT-Charlie,2,172,-6,63046755,63046925 -6 + chr15 63047739 63047962 chr15,63047739,63047962,-,MIR,SINE,MIR,-18,244,4,63047721,63047965 +6 - chr15 63070286 63070331 chr15,63070286,63070331,+,(TATGTA)n,Simple_repeat,Simple_repeat,1,45,0,63070286,63070331 -6 + chr15 63098870 63098980 chr15,63098255,63099787,+,SVA_D,Retroposon,SVA,10,1378,-8,63098246,63099795 +1 + chr15 63105119 63105190 chr15,63105119,63105810,-,LTR12_,LTR,ERV1,-1,687,1,63105118,63105810 -4 - chr15 63110192 63110403 chr15,63110192,63110635,+,MLT1D,LTR,ERVL-MaLR,4,505,0,63110189,63110635 +5 + chr15 63395601 63395681 chr15,63395516,63396101,-,LTR10A,LTR,ERV1,-54,555,1,63395462,63396101 -3 - chr15 63398387 63398467 chr15,63397393,63398636,-,L1M5,LINE,L1,-786,5408,4102,63396607,63402737 -3 - chr15 63431124 63431342 chr15,63431124,63431366,+,MIRb,SINE,MIR,25,260,-8,63431100,63431374 +4 + chr15 63432360 63432388 chr15,63432360,63432408,-,MIR3,SINE,MIR,-47,161,114,63432313,63432521 -4 - chr15 63437092 63437119 chr15,63437092,63437119,+,A-rich,Low_complexity,Low_complexity,1,28,0,63437092,63437119 +6 + chr15 63437357 63437935 chr15,63437357,63437935,-,MER115,DNA,hAT-Tip100,-28,665,29,63437329,63437963 -6 - chr15 63438085 63438155 chr15,63438085,63438155,+,MARNA,DNA,TcMar-Mariner,311,387,-199,63437775,63438354 +6 + chr15 63438244 63438320 chr15,63438244,63438407,-,Charlie30a,DNA,hAT-Charlie,-123,668,521,63438121,63438927 -5 - chr15 63456317 63456372 chr15,63456317,63456372,-,L2,LINE,L2,-2135,1284,1226,63454182,63457597 +6 - chr15 63456408 63456542 chr15,63456408,63456542,+,MIR3,SINE,MIR,25,165,-43,63456384,63456585 -6 + chr15 63469159 63469203 chr15,63469113,63469293,+,MIRb,SINE,MIR,41,254,-14,63469073,63469307 -3 + chr15 63500786 63500968 chr15,63500786,63500968,-,L2a,LINE,L2,0,3426,3215,63500786,63504182 +6 - chr15 63502030 63502074 chr15,63502030,63502074,-,MIR3,SINE,MIR,-6,202,157,63502024,63502230 +6 - chr15 63502166 63502301 chr15,63502166,63502301,-,L2b,LINE,L2,-2,3424,3220,63502164,63505520 +6 - chr15 63502320 63502436 chr15,63502320,63502436,+,AluJo,SINE,Alu,1,117,-195,63502320,63502631 -6 + chr15 63502436 63502468 chr15,63502436,63502468,+,(TGTTTTT)n,Simple_repeat,Simple_repeat,2,35,0,63502435,63502468 -6 + chr15 63502531 63502597 chr15,63502531,63502597,-,L2b,LINE,L2,-225,3162,3099,63502306,63505695 +6 - chr15 63502862 63503083 chr15,63502862,63503092,-,MIRb,SINE,MIR,-4,264,7,63502858,63503098 +1 - chr15 63544318 63544379 chr15,63544318,63544465,-,LTR38B,LTR,ERV1,0,611,466,63544318,63544930 +2 - chr15 63551295 63551342 chr15,63550317,63551800,-,Charlie5,DNA,hAT-Charlie,-1112,1512,53,63549205,63551852 +3 - chr15 63587710 63587783 chr15,63587609,63587783,-,MER58A,DNA,hAT-Charlie,-44,180,3,63587565,63587785 +5 - chr15 63588046 63588255 chr15,63588046,63588255,-,MIRb,SINE,MIR,0,268,27,63588046,63588281 +6 - chr15 63588561 63588598 chr15,63588561,63588598,+,(GAAT)n,Simple_repeat,Simple_repeat,1,38,0,63588561,63588598 -6 + chr15 63599183 63599201 chr15,63599013,63599201,+,MIRb,SINE,MIR,25,245,-23,63598989,63599224 -4 + chr15 63599183 63599219 chr15,63599172,63599219,+,L2c,LINE,L2,3338,3418,-8,63595835,63599227 -4 + chr15 63928432 63928488 chr15,63928432,63928502,+,Charlie17,DNA,hAT-Charlie,2844,2916,0,63925589,63928502 +4 + chr15 63929766 63929838 chr15,63929766,63929984,+,MIRc,SINE,MIR,25,258,-10,63929742,63929994 +4 + chr15 63935541 63935953 chr15,63935390,63936105,-,L1MEd,LINE,L1,-5554,1549,799,63929836,63936903 -5 - chr15 64470253 64470347 chr15,64470135,64470347,-,AluJb,SINE,Alu,-90,222,1,64470045,64470347 -1 - chr15 64470525 64470582 chr15,64470525,64470819,-,AluSg,SINE,Alu,-14,296,1,64470511,64470819 -4 - chr15 64471304 64471364 chr15,64471081,64471376,+,AluSz6,SINE,Alu,3,298,-14,64471079,64471390 +5 + chr15 64701248 64701319 chr15,64701214,64701372,+,MER5B,DNA,hAT-Charlie,3,178,0,64701212,64701372 +1 + chr15 64718753 64718797 chr15,64718753,64718797,+,(GT)n,Simple_repeat,Simple_repeat,1,44,0,64718753,64718797 +6 + chr15 64719218 64719312 chr15,64719218,64719312,+,MER102c,DNA,hAT-Charlie,1,98,-233,64719218,64719545 +6 + chr15 64719312 64719602 chr15,64719312,64719624,+,AluSx,SINE,Alu,1,304,-8,64719312,64719632 +5 + chr15 64943240 64943348 chr15,64943025,64943348,+,L1ME4c,LINE,L1,383,679,-151,64942643,64943499 -5 + chr15 64943641 64943672 chr15,64943641,64943867,+,L2c,LINE,L2,3056,3273,-102,64940586,64943969 -1 + chr15 64951270 64951435 chr15,64951270,64955041,+,(TTC)n,Simple_repeat,Simple_repeat,1,3874,0,64951270,64955041 -1 + chr15 65049327 65049353 chr15,65049327,65049353,+,(A)n,Simple_repeat,Simple_repeat,1,26,0,65049327,65049353 -6 + chr15 65083042 65083067 chr15,65082505,65083067,+,L2a,LINE,L2,2745,3418,-8,65079761,65083075 -5 + chr15 65083101 65083134 chr15,65083101,65083134,+,L2c,LINE,L2,3355,3387,0,65079747,65083134 -6 + chr15 65226541 65226697 chr15,65226541,65227509,-,LTR5_Hs,LTR,ERVK,0,968,1,65226541,65227509 +1 - chr15 65766460 65766471 chr15,65766393,65766471,+,Tigger2b_Pri,DNA,TcMar-Tigger,1,72,-996,65766393,65767467 -5 + chr15 65766503 65766664 chr15,65766503,65766664,+,MER8,DNA,TcMar-Tigger,63,233,-6,65766441,65766670 -6 + chr15 65767288 65767398 chr15,65767287,65767446,+,L2a,LINE,L2,3246,3424,-2,65764042,65767448 -1 + chr15 66331410 66331571 chr15,66331273,66331571,+,AluY,SINE,Alu,1,296,-15,66331273,66331586 -4 + chr15 66488842 66489004 chr15,66488842,66489004,-,MIR3,SINE,MIR,-10,198,22,66488832,66489025 +6 - chr15 66489536 66489656 chr15,66489536,66489656,-,L2c,LINE,L2,-5,3382,3258,66489531,66492913 +6 - chr15 66490178 66490406 chr15,66490178,66490406,-,MIRc,SINE,MIR,-34,234,9,66490144,66490414 +6 - chr15 66582190 66582248 chr15,66581970,66582322,+,THE1A,LTR,ERVL-MaLR,1,353,-2,66581970,66582324 +1 + chr15 66664362 66664452 chr15,66664343,66664474,-,AluJo,SINE,Alu,-181,131,1,66664162,66664474 -3 - chr15 66668341 66668454 chr15,66668294,66668611,-,AluSx,SINE,Alu,0,312,1,66668294,66668611 -3 - chr15 66683999 66684042 chr15,66683827,66684311,-,LTR33,LTR,ERVL,0,515,4,66683827,66684314 -3 - chr15 66685588 66685777 chr15,66685588,66685777,+,MIRc,SINE,MIR,10,208,-60,66685579,66685837 +6 + chr15 66740464 66740682 chr15,66740464,66740682,+,MIR,SINE,MIR,40,259,-3,66740425,66740685 +6 + chr15 66740904 66741134 chr15,66740904,66741134,+,Eulor10,DNA?,DNA?,80,307,-13,66740825,66741147 +6 + chr15 66860303 66860407 chr15,66860199,66860407,-,L1MC5,LINE,L1,-2,6122,5903,66860197,66866309 -1 - chr15 66860504 66860632 chr15,66860504,66860632,+,MIR,SINE,MIR,102,223,-39,66860403,66860671 +6 + chr15 66861108 66861142 chr15,66861108,66861142,+,GA-rich,Low_complexity,Low_complexity,1,34,0,66861108,66861142 +6 + chr15 66861981 66862164 chr15,66861981,66862164,-,MIR3,SINE,MIR,-15,193,2,66861966,66862165 -6 - chr15 66862877 66862951 chr15,66862877,66862951,+,MIR3,SINE,MIR,106,178,-30,66862772,66862981 +6 + chr15 66863081 66863120 chr15,66863081,66863120,+,(GTGTGC)n,Simple_repeat,Simple_repeat,1,41,0,66863081,66863120 +6 + chr15 66863474 66863664 chr15,66863474,66863664,+,L2c,LINE,L2,3022,3215,-172,66860453,66863836 +6 + chr15 66864188 66864339 chr15,66864188,66864339,-,MIRc,SINE,MIR,-117,151,1,66864071,66864339 -6 - chr15 66864643 66864687 chr15,66864643,66864687,-,LTR16B2,LTR,ERVL,-99,363,320,66864544,66865006 -6 - chr15 66864699 66864834 chr15,66864699,66864834,-,LTR16B2,LTR,ERVL,-333,129,1,66864366,66864834 -6 - chr15 66865384 66865511 chr15,66865384,66865511,+,MIRc,SINE,MIR,54,183,-85,66865331,66865596 +6 + chr15 66865550 66865732 chr15,66865550,66865732,+,MIRb,SINE,MIR,58,230,-38,66865493,66865770 +6 + chr15 66866092 66866156 chr15,66866092,66866156,+,MIR3,SINE,MIR,31,93,-115,66866062,66866271 +6 + chr15 66866298 66866333 chr15,66866298,66866333,+,(AGCGGA)n,Simple_repeat,Simple_repeat,1,35,0,66866298,66866333 +6 + chr15 66866484 66867023 chr15,66866484,66867037,+,MER41B,LTR,ERV1,1,562,-72,66866484,66867109 +5 + chr15 66931443 66931497 chr15,66931189,66931497,+,AluSz,SINE,Alu,1,309,-3,66931189,66931500 +2 + chr15 66931497 66931617 chr15,66931497,66931617,+,MER5B,DNA,hAT-Charlie,62,175,-3,66931436,66931620 +5 + chr15 66931537 66931617 chr15,66931497,66931617,+,MER5B,DNA,hAT-Charlie,62,175,-3,66931436,66931620 -5 + chr15 66942056 66942151 chr15,66942056,66942348,+,AluJb,SINE,Alu,21,307,-5,66942036,66942353 -2 + chr15 66987486 66987630 chr15,66987486,66987630,-,MLT1K,LTR,ERVL-MaLR,-44,551,403,66987442,66988032 +6 - chr15 67146051 67146092 chr15,67145862,67146092,+,MIRb,SINE,MIR,1,261,-7,67145862,67146099 -4 + chr15 67404539 67405130 chr15,67404539,67405130,-,L1ME4c,LINE,L1,-70,760,107,67404469,67405236 +6 - chr15 67405268 67405390 chr15,67405268,67405390,-,MamRTE1,LINE,RTE-BovB,-1274,2538,2397,67403994,67407786 +6 - chr15 67405390 67405429 chr15,67405390,67405429,+,(TCA)n,Simple_repeat,Simple_repeat,1,39,0,67405390,67405429 -6 + chr15 67405429 67405444 chr15,67405429,67405444,-,MamRTE1,LINE,RTE-BovB,-1416,2396,2379,67404013,67407822 +6 - chr15 67405441 67405691 chr15,67405441,67405691,-,MIRb,SINE,MIR,-22,246,21,67405419,67405711 +6 - chr15 67406275 67406527 chr15,67406275,67406527,+,AluJr,SINE,Alu,24,287,-25,67406252,67406552 -6 + chr15 67406694 67406918 chr15,67406694,67406918,+,MIRb,SINE,MIR,34,268,0,67406661,67406918 -6 + chr15 67406932 67407041 chr15,67406932,67407041,-,Tigger14a,DNA,TcMar-Tigger,-110,214,103,67406822,67407143 +6 - chr15 67421209 67421284 chr15,67421035,67421284,-,MIRb,SINE,MIR,-6,262,5,67421029,67421288 +5 - chr15 67430350 67430400 chr15,67430350,67430444,-,L2b,LINE,L2,-5,3370,3261,67430345,67433704 +2 - chr15 67459866 67459975 chr15,67459866,67460095,+,AluJb,SINE,Alu,2,227,-85,67459865,67460180 -2 + chr15 67466962 67467054 chr15,67466941,67467244,+,AluJb,SINE,Alu,1,304,-8,67466941,67467252 -3 + chr15 67519000 67519102 chr15,67519000,67519119,+,FLAM_A,SINE,Alu,1,131,-11,67519000,67519130 -3 + chr15 67520006 67520101 chr15,67519988,67520297,+,AluSg,SINE,Alu,1,309,-1,67519988,67520298 -5 + chr15 67520192 67520265 chr15,67519988,67520297,+,AluSg,SINE,Alu,1,309,-1,67519988,67520298 -5 + chr15 67541546 67541874 chr15,67541546,67541874,+,AluSg,SINE,Alu,1,298,-12,67541546,67541886 -6 + chr15 67834537 67834561 chr15,67834537,67834561,+,(TAA)n,Simple_repeat,Simple_repeat,1,24,0,67834537,67834561 -6 + chr15 67835347 67835498 chr15,67835347,67835498,+,MIRb,SINE,MIR,3,148,-120,67835345,67835618 -6 + chr15 67873697 67873866 chr15,67873523,67874173,+,LTR41,LTR,ERVL,1,767,-1,67873523,67874174 +5 + chr15 68267792 68268162 chr15,68267736,68268162,-,MLT1J2,LTR,ERVL-MaLR,0,448,9,68267736,68268170 +5 - chr15 68974729 68974763 chr15,68974704,68974763,-,AluJb,SINE,Alu,-3,299,243,68974701,68975005 -2 - chr15 68974768 68974832 chr15,68974768,68976233,-,LTR12C,LTR,ERV1,0,1579,3,68974768,68976235 -4 - chr15 69028710 69028779 chr15,69028710,69028779,-,HAL1b,LINE,L1,-37,2384,2315,69028673,69031093 -6 - chr15 69028780 69028889 chr15,69028780,69028968,-,L1ME4a,LINE,L1,-123,6001,5830,69028657,69034797 -5 - chr15 69037549 69038186 chr15,69037456,69038186,-,L2b,LINE,L2,-2,3373,2531,69037454,69040716 +5 - chr15 69038267 69038369 chr15,69038267,69038471,+,MIR,SINE,MIR,29,247,-21,69038239,69038492 -2 + chr15 69072926 69073190 chr15,69072763,69073273,+,MLT1F1,LTR,ERVL-MaLR,3,569,0,69072761,69073273 +1 + chr15 69074758 69074844 chr15,69074758,69074844,-,MamTip1,DNA,hAT-Tip100,0,267,175,69074758,69075018 -6 - chr15 69080850 69081232 chr15,69080204,69081232,-,L1M7,LINE,L1,-5053,1165,8,69075151,69081239 -1 - chr15 69081240 69081323 chr15,69081240,69081323,-,L2c,LINE,L2,-611,2808,2722,69080629,69084044 -6 - chr15 69089538 69089597 chr15,69089497,69089617,-,MIR,SINE,MIR,0,262,142,69089497,69089758 -3 - chr15 69091880 69092367 chr15,69091880,69092757,+,L1ME3A,LINE,L1,5241,6161,-12,69086640,69092769 +4 + chr15 69095155 69095751 chr15,69095155,69095751,+,L2c,LINE,L2,2618,3247,-140,69092538,69095891 +5 + chr15 69097584 69097673 chr15,69097571,69097695,-,AluJr,SINE,Alu,-187,125,1,69097384,69097695 -3 - chr15 69099596 69099735 chr15,69099468,69099735,-,MIRb,SINE,MIR,-7,261,5,69099461,69099739 -2 - chr15 69278894 69278933 chr15,69278894,69278933,+,(GT)n,Simple_repeat,Simple_repeat,1,39,0,69278894,69278933 -6 + chr15 69278967 69279075 chr15,69278967,69279517,+,L2a,LINE,L2,2750,3415,-11,69276218,69279528 -2 + chr15 69279655 69279754 chr15,69279651,69279789,+,MER5A1,DNA,hAT-Charlie,33,165,-1,69279619,69279790 +3 + chr15 69282963 69283122 chr15,69282900,69283122,+,ORSL,DNA,hAT-Tip100,1,236,-39,69282900,69283161 -5 + chr15 69283280 69283531 chr15,69283280,69283531,-,AluSx1,SINE,Alu,-10,302,1,69283270,69283531 +6 - chr15 69285919 69286069 chr15,69285663,69286069,+,MER21B,LTR,ERVL,309,733,-135,69285355,69286204 -4 + chr15 69286068 69286257 chr15,69286068,69286257,+,MER21B,LTR,ERVL,657,851,-17,69285412,69286274 -6 + chr15 69288408 69288474 chr15,69288004,69288474,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,69288002,69288474 -1 - chr15 69288422 69288474 chr15,69288004,69288474,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,69288002,69288474 +1 - chr15 69288479 69288546 chr15,69288479,69288546,+,L2b,LINE,L2,3308,3375,0,69285172,69288546 +6 + chr15 69288479 69288529 chr15,69288479,69288546,+,L2b,LINE,L2,3308,3375,0,69285172,69288546 -2 + chr15 69295073 69295198 chr15,69294921,69295198,+,MLT1C,LTR,ERVL-MaLR,8,331,-136,69294914,69295334 +2 + chr15 69295198 69295268 chr15,69295198,69295268,+,MIRc,SINE,MIR,180,253,-15,69295019,69295283 +6 + chr15 69296377 69296551 chr15,69296377,69296551,-,MIRc,SINE,MIR,0,268,90,69296377,69296640 +6 - chr15 69296917 69297047 chr15,69296917,69297047,+,MIR3,SINE,MIR,43,169,-39,69296875,69297086 -6 + chr15 69297564 69297653 chr15,69297564,69297653,-,MIRc,SINE,MIR,-43,225,134,69297521,69297786 +6 - chr15 69297815 69297860 chr15,69297815,69297860,+,(ACACGC)n,Simple_repeat,Simple_repeat,1,45,0,69297815,69297860 -6 + chr15 69297941 69298073 chr15,69297941,69298073,-,MIR3,SINE,MIR,-42,166,16,69297899,69298088 +6 - chr15 69391987 69392059 chr15,69391774,69392059,+,AluSq,SINE,Alu,1,298,-15,69391774,69392074 +2 + chr15 69397691 69397766 chr15,69397691,69397766,-,LTR5B,LTR,ERVK,0,1002,926,69397691,69398691 +6 - chr15 69397762 69397799 chr15,69397762,69397862,-,LTR5B,LTR,ERVK,-903,99,1,69396859,69397862 +2 - chr15 69400973 69401021 chr15,69400848,69401021,+,MER5A,DNA,hAT-Charlie,1,180,-9,69400848,69401030 -4 + chr15 69458695 69458820 chr15,69458695,69458997,-,AluSg,SINE,Alu,0,310,1,69458695,69458997 +2 - chr15 69461715 69461806 chr15,69461510,69461824,+,AluSp,SINE,Alu,1,313,0,69461510,69461824 -1 + chr15 69464851 69464891 chr15,69464851,69465150,+,L1ME4b,LINE,L1,590,924,0,69464262,69465150 +4 + chr15 69467430 69467466 chr15,69467397,69467466,+,MamTip2,DNA,hAT-Tip100,81,154,-151,69467317,69467617 +2 + chr15 69468333 69468393 chr15,69468333,69468401,+,MIR3,SINE,MIR,81,148,-60,69468253,69468461 +4 + chr15 69563116 69563181 chr15,69563010,69563181,+,MIRb,SINE,MIR,36,221,-47,69562975,69563228 +2 + chr15 69563671 69563744 chr15,69563671,69563744,-,MER45A,DNA,hAT-Tip100,-21,157,86,69563650,69563829 -6 - chr15 69563725 69563804 chr15,69563725,69563824,+,Zaphod3,DNA,hAT-Tip100,144,243,-2380,69563582,69566204 +4 + chr15 69564724 69565009 chr15,69564511,69565009,+,Zaphod3,DNA,hAT-Tip100,278,764,-1859,69564234,69566868 -5 + chr15 69565479 69565527 chr15,69565479,69565580,+,Zaphod3,DNA,hAT-Tip100,2523,2623,0,69562957,69565580 +4 + chr15 69565479 69565580 chr15,69565479,69565580,+,Zaphod3,DNA,hAT-Tip100,2523,2623,0,69562957,69565580 -6 + chr15 69565708 69565759 chr15,69565708,69565759,-,MLT1O,LTR,ERVL-MaLR,-5,537,484,69565703,69566242 +6 - chr15 69570740 69570782 chr15,69570547,69570782,+,LTR48B,LTR,ERV1,415,643,-1,69570133,69570783 +2 + chr15 69571042 69571440 chr15,69571042,69571567,+,MLT2C2,LTR,ERVL,1,567,0,69571042,69571567 +5 + chr15 69611490 69611678 chr15,69611490,69611678,+,MER117,DNA,hAT-Charlie,1,197,0,69611490,69611678 +6 + chr15 69611810 69611965 chr15,69611810,69611965,-,MER5A1,DNA,hAT-Charlie,0,166,1,69611810,69611965 -6 - chr15 69612164 69612234 chr15,69612164,69612234,-,MIRc,SINE,MIR,-144,124,47,69612020,69612280 -6 - chr15 69612494 69612607 chr15,69612494,69612607,+,MIRb,SINE,MIR,34,157,-111,69612461,69612718 +6 + chr15 69612607 69612890 chr15,69612607,69612911,+,AluSg,SINE,Alu,1,301,-9,69612607,69612920 +5 + chr15 69670150 69670183 chr15,69670150,69670257,-,MIRb,SINE,MIR,-97,171,20,69670053,69670276 -4 - chr15 69671740 69671813 chr15,69671430,69671813,+,L2c,LINE,L2,2950,3381,-6,69668481,69671819 +1 + chr15 69677551 69677640 chr15,69677551,69677667,+,MLT1I,LTR,ERVL-MaLR,81,200,-211,69677471,69677878 +4 + chr15 69684297 69684442 chr15,69684177,69684668,+,LTR67B,LTR,ERVL,34,527,-93,69684144,69684761 +3 + chr15 69695667 69695750 chr15,69695392,69696059,+,L2a,LINE,L2,2472,3181,-245,69692921,69696304 +5 + chr15 69820756 69820851 chr15,69820732,69820851,-,MIRb,SINE,MIR,-25,243,115,69820707,69820965 +5 - chr15 69821600 69821612 chr15,69821496,69821612,+,L2b,LINE,L2,3249,3375,0,69818248,69821612 -4 + chr15 69840746 69840828 chr15,69840656,69840847,+,MIRb,SINE,MIR,54,249,-19,69840603,69840866 +3 + chr15 69841889 69842030 chr15,69841889,69842287,+,MLT1B,LTR,ERVL-MaLR,1,467,0,69841889,69842287 +5 + chr15 69842061 69842287 chr15,69841889,69842287,+,MLT1B,LTR,ERVL-MaLR,1,467,0,69841889,69842287 +5 + chr15 69842998 69843054 chr15,69842998,69843054,+,(CCAC)n,Simple_repeat,Simple_repeat,1,56,0,69842998,69843054 +6 + chr15 69843055 69843101 chr15,69843055,69843101,+,(CATC)n,Simple_repeat,Simple_repeat,1,46,0,69843055,69843101 +6 + chr15 69843102 69843120 chr15,69843102,69843541,-,L2b,LINE,L2,-14,3361,2923,69843088,69846463 -5 - chr15 70504019 70504125 chr15,70504019,70504182,+,MIR3,SINE,MIR,25,187,-21,70503995,70504203 -2 + chr15 70749004 70749240 chr15,70749004,70749240,+,L1ME2z,LINE,L1,6308,6441,-3,70742697,70749243 +6 + chr15 70749244 70749295 chr15,70749244,70749549,+,AluYk2,SINE,Alu,1,306,-5,70749244,70749554 +4 + chr15 70754070 70754105 chr15,70753806,70754105,-,AluSx1,SINE,Alu,-13,299,1,70753793,70754105 -2 - chr15 70778828 70778868 chr15,70778828,70778961,+,L2a,LINE,L2,3288,3426,0,70775541,70778961 -1 + chr15 70848883 70849076 chr15,70848863,70849076,+,L1MC5a,LINE,L1,1093,1327,-1450,70847771,70850526 -5 + chr15 70849076 70849098 chr15,70849076,70849359,+,AluSq2,SINE,Alu,1,285,-28,70849076,70849387 -2 + chr15 70849232 70849359 chr15,70849076,70849359,+,AluSq2,SINE,Alu,1,285,-28,70849076,70849387 -4 + chr15 70849359 70849391 chr15,70849359,70849391,+,(AAAC)n,Simple_repeat,Simple_repeat,1,32,0,70849359,70849391 -6 + chr15 70849395 70849770 chr15,70849395,70850078,+,L1MC5a,LINE,L1,1328,1993,-784,70848068,70850862 -1 + chr15 71147694 71147790 chr15,71147694,71147995,+,AluJb,SINE,Alu,11,309,-3,71147684,71147998 -2 + chr15 71183106 71183216 chr15,71183022,71183387,-,THE1B,LTR,ERVL-MaLR,0,364,1,71183022,71183387 +3 - chr15 71183939 71183964 chr15,71183752,71183964,-,MER20,DNA,hAT-Charlie,0,219,4,71183752,71183967 +5 - chr15 71185766 71185940 chr15,71185766,71185940,-,L2c,LINE,L2,-20,3367,3182,71185746,71189121 +6 - chr15 71185959 71186101 chr15,71185959,71186101,-,MIRb,SINE,MIR,-8,260,117,71185951,71186217 +6 - chr15 71186623 71186653 chr15,71186623,71186653,+,MIRc,SINE,MIR,91,120,-148,71186533,71186801 -6 + chr15 71186686 71186740 chr15,71186686,71186740,+,L2b,LINE,L2,3289,3342,-33,71183398,71186773 -6 + chr15 71188996 71189038 chr15,71188996,71189038,+,(CCTT)n,Simple_repeat,Simple_repeat,1,45,0,71188996,71189038 -1 + chr15 71348233 71348378 chr15,71348233,71348378,-,MER5A1,DNA,hAT-Charlie,0,166,18,71348233,71348395 -6 - chr15 71818655 71818752 chr15,71818599,71818895,-,AluSp,SINE,Alu,-3,310,14,71818596,71818908 -3 - chr15 71822224 71822256 chr15,71822224,71822256,+,(TTGGAG)n,Simple_repeat,Simple_repeat,1,36,0,71822224,71822256 +6 + chr15 71972206 71972317 chr15,71971811,71972688,+,MER21A,LTR,ERVL,14,928,-3,71971798,71972691 +1 + chr15 71993693 71993788 chr15,71993687,71993971,+,AluSx1,SINE,Alu,1,299,-13,71993687,71993984 +3 + chr15 72036515 72036689 chr15,72036282,72036690,+,L1ME1,LINE,L1,1,403,-7114,72036282,72043804 +3 + chr15 72040095 72040265 chr15,72040095,72040310,+,MER61-int,LTR,ERV1,4999,5217,0,72035097,72040310 +5 + chr15 72278867 72279031 chr15,72278738,72279123,+,MLT1K,LTR,ERVL-MaLR,152,595,0,72278587,72279123 +1 + chr15 72345944 72346048 chr15,72345944,72346048,+,MIRc,SINE,MIR,84,194,-74,72345861,72346122 +6 + chr15 72350795 72351022 chr15,72350795,72351022,-,MIRc,SINE,MIR,-33,235,14,72350762,72351035 -6 - chr15 72376327 72376445 chr15,72376327,72376445,-,L2c,LINE,L2,-233,3154,3031,72376094,72379475 -6 - chr15 72377046 72377096 chr15,72377046,72377096,+,L2b,LINE,L2,3276,3325,-50,72373771,72377146 +6 + chr15 72377225 72377358 chr15,72377225,72377358,+,FLAM_A,SINE,Alu,2,124,-18,72377224,72377376 +6 + chr15 72377965 72378079 chr15,72377965,72378079,-,Kanga1b,DNA,TcMar-Tc2,-124,655,530,72377841,72378608 -6 - chr15 72378102 72378333 chr15,72378102,72378333,+,L1M5,LINE,L1,4767,5004,-1142,72373336,72379475 +6 + chr15 72378333 72378450 chr15,72378333,72378450,+,AluJb,SINE,Alu,1,117,-195,72378333,72378645 +6 + chr15 72378469 72378733 chr15,72378469,72378733,+,L1MA1,LINE,L1,6021,6302,0,72372449,72378733 +6 + chr15 72378742 72378788 chr15,72378742,72379019,+,AluSx1,SINE,Alu,1,290,-22,72378742,72379041 +5 + chr15 72421425 72421582 chr15,72421248,72421582,+,MLT1H,LTR,ERVL-MaLR,52,361,-188,72421197,72421770 -4 + chr15 72465376 72465473 chr15,72465376,72465473,-,L2c,LINE,L2,-266,3121,3023,72465110,72468495 +6 - chr15 72465564 72465692 chr15,72465564,72465692,-,FLAM_A,SINE,Alu,-11,131,4,72465553,72465695 +6 - chr15 72465818 72465884 chr15,72465818,72465884,+,L2c,LINE,L2,3355,3419,-7,72462464,72465891 -6 + chr15 72465944 72466252 chr15,72465944,72466252,+,AluSx1,SINE,Alu,2,312,0,72465943,72466252 -6 + chr15 72473189 72473375 chr15,72473189,72473375,+,L2b,LINE,L2,2920,3145,-242,72470270,72473617 -6 + chr15 72473555 72473674 chr15,72473555,72473674,+,MIRb,SINE,MIR,87,226,-42,72473469,72473716 -6 + chr15 72474427 72474462 chr15,72474427,72474462,+,(CCCT)n,Simple_repeat,Simple_repeat,1,36,0,72474427,72474462 -6 + chr15 72474518 72474578 chr15,72474518,72474578,+,(CGGAGC)n,Simple_repeat,Simple_repeat,1,62,0,72474518,72474578 -6 + chr15 72474641 72474752 chr15,72474641,72474752,+,(GGACGA)n,Simple_repeat,Simple_repeat,1,107,0,72474641,72474752 -6 + chr15 72474795 72474856 chr15,72474795,72474856,+,(GGCGGC)n,Simple_repeat,Simple_repeat,1,63,0,72474795,72474856 -6 + chr15 72474866 72474896 chr15,72474866,72474896,+,(CGG)n,Simple_repeat,Simple_repeat,1,30,0,72474866,72474896 -6 + chr15 72589792 72589827 chr15,72589792,72589827,-,MIRb,SINE,MIR,-48,220,184,72589744,72590010 -6 - chr15 72589827 72589957 chr15,72589827,72589957,-,FLAM_A,SINE,Alu,-11,131,1,72589816,72589957 -6 - chr15 72589957 72590092 chr15,72589957,72590092,-,MIRb,SINE,MIR,-85,183,51,72589872,72590142 -6 - chr15 72590193 72590236 chr15,72590193,72590236,-,MIRc,SINE,MIR,-161,107,65,72590032,72590300 -6 - chr15 72590580 72590746 chr15,72590580,72590746,-,FAM,SINE,Alu,-20,165,1,72590560,72590746 -6 - chr15 72590940 72591249 chr15,72590940,72591249,+,AluSg,SINE,Alu,1,310,0,72590940,72591249 +6 + chr15 72591667 72591705 chr15,72591667,72591705,-,MIR,SINE,MIR,0,262,225,72591667,72591929 -6 - chr15 72615810 72616304 chr15,72614568,72616304,-,L1M1,LINE,L1,-5811,1754,13,72608757,72616316 -1 - chr15 72616130 72616247 chr15,72614568,72616304,-,L1M1,LINE,L1,-5811,1754,13,72608757,72616316 +1 - chr15 72616305 72616414 chr15,72616305,72616414,-,MLT1A,LTR,ERVL-MaLR,-261,113,1,72616044,72616414 -6 - chr15 72617175 72617644 chr15,72617175,72617644,-,HAL1,LINE,L1,-720,1787,1304,72616455,72618947 -6 - chr15 72633338 72633406 chr15,72633218,72633576,-,THE1C,LTR,ERVL-MaLR,0,375,1,72633218,72633576 +3 - chr15 72782866 72782977 chr15,72782866,72782977,-,L2,LINE,L2,-1266,2153,2037,72781600,72785013 -6 - chr15 72787519 72787593 chr15,72787519,72787711,+,MIRb,SINE,MIR,19,234,-34,72787501,72787745 +4 + chr15 72792556 72792963 chr15,72792528,72793003,+,MLT1H,LTR,ERVL-MaLR,58,548,-1,72792471,72793004 +5 + chr15 72798004 72798133 chr15,72797980,72798133,-,AluJb,SINE,Alu,-14,298,145,72797966,72798277 -2 - chr15 72798143 72798199 chr15,72798143,72798330,-,LTR37A,LTR,ERV1,-13,413,210,72798130,72798539 -5 - chr15 73256020 73256109 chr15,73256020,73256206,-,L4_A_Mam,LINE,RTE-X,-3999,991,802,73252021,73257007 +1 - chr15 73335479 73335527 chr15,73335341,73335527,-,MER115,DNA,hAT-Tip100,0,693,505,73335341,73336031 -2 - chr15 73341013 73341036 chr15,73340940,73341036,+,MIRc,SINE,MIR,109,204,-64,73340832,73341100 +2 + chr15 73342325 73342387 chr15,73342325,73342760,+,LTR16A2,LTR,ERVL,32,493,-2,73342294,73342762 +5 + chr15 73730098 73730144 chr15,73730098,73730144,-,L2c,LINE,L2,-70,3317,3269,73730028,73733412 +6 - chr15 73730265 73730528 chr15,73730265,73730528,-,MER102c,DNA,hAT-Charlie,0,331,1,73730265,73730528 +6 - chr15 73731313 73731345 chr15,73731313,73731345,+,(CCTTCC)n,Simple_repeat,Simple_repeat,1,32,0,73731313,73731345 -6 + chr15 73731362 73731711 chr15,73731362,73732696,-,LTR12C,LTR,ERV1,0,1579,17,73731362,73732712 +1 - chr15 73768809 73768860 chr15,73768809,73769105,+,AluSx1,SINE,Alu,1,297,-15,73768809,73769120 +4 + chr15 73769713 73769754 chr15,73769713,73769754,+,(CCAGGAG)n,Simple_repeat,Simple_repeat,1,41,0,73769713,73769754 +6 + chr15 73770349 73770613 chr15,73770349,73770848,-,L1M5,LINE,L1,-1831,4315,3828,73768518,73774675 -5 - chr15 73870950 73871200 chr15,73870816,73871359,-,MER70C,LTR,ERVL,-29,549,2,73870787,73871360 +5 - chr15 73871943 73872052 chr15,73871922,73872052,-,MIRc,SINE,MIR,-103,165,38,73871819,73872089 +1 - chr15 73872085 73872103 chr15,73872085,73872152,-,Tigger19b,DNA,TcMar-Tigger,0,550,487,73872085,73872638 +2 - chr15 73908212 73908257 chr15,73908212,73908257,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,73908212,73908257 -6 + chr15 73912193 73912303 chr15,73912193,73912323,+,FLAM_A,SINE,Alu,5,134,-8,73912189,73912331 -2 + chr15 73916304 73916447 chr15,73916092,73916683,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,73916092,73916683 +5 - chr15 73917468 73917716 chr15,73917298,73917716,+,L1M5,LINE,L1,4704,5160,-986,73912595,73918702 -5 + chr15 73917717 73917882 chr15,73917717,73917882,+,L1M5,LINE,L1,5185,5352,-794,73912533,73918676 -6 + chr15 73917882 73918212 chr15,73917882,73918212,-,L2a,LINE,L2,0,3426,3076,73917882,73921287 +6 - chr15 73918255 73918446 chr15,73918255,73918446,-,L2a,LINE,L2,-475,2944,2740,73917780,73921185 +6 - chr15 73918446 73918728 chr15,73918446,73918728,+,L1M5,LINE,L1,5361,5667,-457,73913086,73919185 -6 + chr15 73918729 73918894 chr15,73918729,73918894,-,MIR,SINE,MIR,-8,254,38,73918721,73918931 +5 - chr15 73918912 73919027 chr15,73918912,73919027,+,L1M5,LINE,L1,5670,5797,-327,73913243,73919354 -6 + chr15 73919127 73919264 chr15,73919127,73919264,+,L1ME3A,LINE,L1,6034,6237,-5,73913094,73919269 -5 + chr15 73919267 73919565 chr15,73919267,73919565,+,AluY,SINE,Alu,1,295,-16,73919267,73919581 -6 + chr15 74126265 74126347 chr15,74126265,74126347,-,MIR,SINE,MIR,-16,246,160,74126249,74126506 +6 - chr15 74126347 74126647 chr15,74126347,74126647,-,AluSg,SINE,Alu,0,310,1,74126347,74126647 +5 - chr15 74126647 74126759 chr15,74126647,74126759,-,MIR,SINE,MIR,-109,159,45,74126538,74126803 +6 - chr15 74126896 74126958 chr15,74126896,74126958,+,(TG)n,Simple_repeat,Simple_repeat,1,62,0,74126896,74126958 -6 + chr15 74127060 74127356 chr15,74127060,74127356,-,ORSL-2a,DNA,hAT-Tip100,-3,339,40,74127057,74127395 +6 - chr15 74128629 74128653 chr15,74128629,74128653,+,(GAAA)n,Simple_repeat,Simple_repeat,1,24,0,74128629,74128653 -6 + chr15 74152800 74153173 chr15,74152467,74153173,-,HAL1,LINE,L1,-45,2462,1697,74152422,74154869 +5 - chr15 74153178 74153205 chr15,74153178,74153413,-,Arthur1B,DNA,hAT-Tip100,0,1225,944,74153178,74154356 +2 - chr15 74156127 74156203 chr15,74156094,74156504,+,MER92A,LTR,ERV1,1,412,0,74156094,74156504 -3 + chr15 74212610 74212679 chr15,74212610,74212679,+,MIR3,SINE,MIR,34,98,-110,74212577,74212789 +6 + chr15 74212679 74212936 chr15,74212679,74212936,+,MER39B,LTR,ERV1,1,273,-380,74212679,74213316 +6 + chr15 74212936 74212973 chr15,74212936,74213239,+,AluSz,SINE,Alu,5,306,-6,74212932,74213245 +5 + chr15 74213268 74213488 chr15,74213239,74213626,+,MER39B,LTR,ERV1,274,653,0,74212966,74213626 +5 + chr15 74299503 74299587 chr15,74299484,74299587,-,MIR3,SINE,MIR,-23,185,90,74299461,74299676 -1 - chr15 74299831 74299893 chr15,74299831,74299893,+,(ACTC)n,Simple_repeat,Simple_repeat,1,63,0,74299831,74299893 +6 + chr15 74301495 74301538 chr15,74301495,74301538,+,L2a,LINE,L2,3382,3425,-1,74298114,74301539 +6 + chr15 74301799 74301930 chr15,74301799,74301930,+,(TC)n,Simple_repeat,Simple_repeat,1,135,0,74301799,74301930 +6 + chr15 74302147 74302226 chr15,74302147,74302226,-,L3,LINE,CR1,-2174,1925,1844,74299973,74304069 -6 - chr15 74302603 74302714 chr15,74302603,74302714,-,MER81,DNA,hAT-Blackjack,0,114,1,74302603,74302714 -6 - chr15 74302848 74302961 chr15,74302848,74302961,+,MIR3,SINE,MIR,60,176,-32,74302789,74302993 +6 + chr15 74303401 74303439 chr15,74303401,74303439,+,(AGAGAC)n,Simple_repeat,Simple_repeat,1,38,0,74303401,74303439 +6 + chr15 74303963 74303990 chr15,74303963,74303990,+,(AGGG)n,Simple_repeat,Simple_repeat,1,27,0,74303963,74303990 +6 + chr15 74304081 74304266 chr15,74304081,74304266,+,MIRc,SINE,MIR,55,246,-22,74304027,74304288 +6 + chr15 74304407 74304431 chr15,74304407,74304431,+,(CCTC)n,Simple_repeat,Simple_repeat,1,25,0,74304407,74304431 +6 + chr15 74311516 74311874 chr15,74311467,74311874,-,MER90a,LTR,ERV1,-8,606,194,74311459,74312067 +5 - chr15 74365444 74365505 chr15,74365444,74365543,+,MIRb,SINE,MIR,112,220,-48,74365333,74365591 +4 + chr15 74366717 74367015 chr15,74366717,74367015,-,AluSx1,SINE,Alu,-14,298,1,74366703,74367015 -6 - chr15 74367178 74367199 chr15,74367178,74367199,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,74367178,74367199 +6 + chr15 74368058 74368111 chr15,74368058,74368111,-,Tigger3c,DNA,TcMar-Tigger,-1,601,549,74368057,74368659 -6 - chr15 74368111 74368153 chr15,74368111,74368153,+,(TATTT)n,Simple_repeat,Simple_repeat,1,42,0,74368111,74368153 +6 + chr15 74368153 74368171 chr15,74368153,74368171,-,Tigger3c,DNA,TcMar-Tigger,-54,548,535,74368099,74368705 -6 - chr15 74368156 74368202 chr15,74368156,74368202,-,AluSp,SINE,Alu,-36,277,232,74368120,74368433 -6 - chr15 74368491 74368526 chr15,74368491,74368526,+,(CCCACCA)n,Simple_repeat,Simple_repeat,1,36,0,74368491,74368526 +6 + chr15 74368749 74368987 chr15,74368749,74368987,+,L1MB8,LINE,L1,5944,6178,0,74362806,74368987 +6 + chr15 74368987 74369010 chr15,74368987,74369010,+,(AC)n,Simple_repeat,Simple_repeat,2,24,0,74368986,74369010 +6 + chr15 74369655 74369746 chr15,74369655,74369746,+,MLT1L,LTR,ERVL-MaLR,201,290,-320,74369455,74370066 +6 + chr15 74369784 74369897 chr15,74369784,74369897,-,MLT1F2,LTR,ERVL-MaLR,0,560,438,74369784,74370334 -6 - chr15 74369897 74369955 chr15,74369897,74369955,+,(CTGGGTGG)n,Simple_repeat,Simple_repeat,1,58,0,74369897,74369955 +6 + chr15 74369955 74370080 chr15,74369955,74370080,-,MLT1F2,LTR,ERVL-MaLR,-123,437,319,74369832,74370398 -6 - chr15 74370100 74370153 chr15,74370100,74370153,+,(AT)n,Simple_repeat,Simple_repeat,1,55,0,74370100,74370153 +6 + chr15 74370497 74370834 chr15,74370497,74370834,-,MLT1J,LTR,ERVL-MaLR,-33,479,142,74370464,74370975 -6 - chr15 74370834 74371211 chr15,74370834,74371284,+,MER51E,LTR,ERV1,1,482,0,74370834,74371284 +5 + chr15 74466036 74466130 chr15,74465980,74466287,-,AluSz,SINE,Alu,-2,310,1,74465978,74466287 -3 - chr15 74479044 74479083 chr15,74478872,74479083,-,L1ME1,LINE,L1,-14,6165,5913,74478858,74484995 -2 - chr15 74479083 74479278 chr15,74479083,74480909,-,LTR12C,LTR,ERV1,0,1579,3,74479083,74480911 -5 - chr15 74480621 74480909 chr15,74479083,74480909,-,LTR12C,LTR,ERV1,0,1579,3,74479083,74480911 -5 - chr15 74481159 74481283 chr15,74481159,74481283,+,FLAM_C,SINE,Alu,21,220,-82,74481139,74481365 +6 + chr15 74490996 74491035 chr15,74490996,74491412,+,L1M5,LINE,L1,4565,5010,-1130,74486432,74492542 +4 + chr15 74491464 74491582 chr15,74491421,74491741,-,AluJb,SINE,Alu,0,312,1,74491421,74491741 -3 - chr15 74516895 74516959 chr15,74516889,74517052,+,MLT1J1,LTR,ERVL-MaLR,240,477,-35,74516650,74517087 +5 + chr15 74599213 74599369 chr15,74599213,74599369,-,MLT1O,LTR,ERVL-MaLR,-279,263,93,74598934,74599461 +6 - chr15 74613442 74613497 chr15,74613442,74613497,-,MamTip2,DNA,hAT-Tip100,-138,167,113,74613304,74613609 +6 - chr15 74819399 74819491 chr15,74819399,74819491,+,MIRb,SINE,MIR,148,246,-22,74819252,74819513 +6 + chr15 74819849 74819893 chr15,74819849,74819893,+,(TCACCCC)n,Simple_repeat,Simple_repeat,1,44,0,74819849,74819893 +6 + chr15 74824673 74825013 chr15,74824673,74825013,-,L2b,LINE,L2,-88,3287,2930,74824585,74827942 -6 - chr15 74826535 74826607 chr15,74826535,74826607,+,G-rich,Low_complexity,Low_complexity,1,76,0,74826535,74826607 +6 + chr15 74826647 74826688 chr15,74826647,74826688,+,(GTGCCCG)n,Simple_repeat,Simple_repeat,1,41,0,74826647,74826688 +6 + chr15 74830204 74830235 chr15,74830204,74830235,+,GA-rich,Low_complexity,Low_complexity,1,31,0,74830204,74830235 +6 + chr15 74830802 74830960 chr15,74830802,74830960,+,MIR3,SINE,MIR,19,188,-20,74830784,74830980 +6 + chr15 75211336 75211435 chr15,75211336,75211495,+,MIRb,SINE,MIR,24,188,-80,75211313,75211575 -2 + chr15 75346744 75346781 chr15,75346668,75346781,-,L1MC5a,LINE,L1,-156,2621,2501,75346512,75349281 +5 - chr15 75346837 75347068 chr15,75346837,75347068,+,L2b,LINE,L2,2866,3093,-282,75343972,75347350 -6 + chr15 75600860 75600890 chr15,75600860,75600950,+,MIR3,SINE,MIR,107,193,-15,75600754,75600965 -2 + chr15 75624793 75625075 chr15,75624759,75625075,-,AluSq,SINE,Alu,0,313,1,75624759,75625075 -1 - chr15 75636139 75636236 chr15,75635946,75636236,-,AluJb,SINE,Alu,-15,297,1,75635931,75636236 -1 - chr15 75636236 75636304 chr15,75636236,75636304,-,L1MB4,LINE,L1,-119,6061,5991,75636117,75642294 -6 - chr15 75636306 75636453 chr15,75636306,75636453,-,MIR,SINE,MIR,-111,151,5,75636195,75636457 -6 - chr15 75636453 75636512 chr15,75636453,75636760,-,AluSx1,SINE,Alu,-4,308,2,75636449,75636761 -4 - chr15 75639045 75639075 chr15,75638777,75639075,+,AluSg,SINE,Alu,1,297,-13,75638777,75639088 +2 + chr15 75640757 75640876 chr15,75640757,75640876,+,MER5A,DNA,hAT-Charlie,62,183,-6,75640696,75640882 +6 + chr15 75645020 75645123 chr15,75644970,75645123,-,LTR33,LTR,ERVL,-58,457,317,75644912,75645439 -1 - chr15 75645381 75645442 chr15,75645381,75645450,+,MIRb,SINE,MIR,187,255,-13,75645195,75645463 +5 + chr15 75678548 75678653 chr15,75678351,75678653,-,AluJo,SINE,Alu,-11,301,1,75678340,75678653 -1 - chr15 75678653 75679339 chr15,75678653,75679339,+,L2,LINE,L2,1808,2600,-819,75676846,75680158 +6 + chr15 75679339 75679547 chr15,75679339,75679547,+,L2,LINE,L2,2706,2936,-483,75676634,75680030 +6 + chr15 75679689 75679983 chr15,75679689,75679983,-,AluSc8,SINE,Alu,-22,289,1,75679667,75679983 -6 - chr15 75680160 75680212 chr15,75680160,75680212,+,G-rich,Low_complexity,Low_complexity,1,53,0,75680160,75680212 +6 + chr15 75680377 75680531 chr15,75680377,75680531,-,MER102b,DNA,hAT-Charlie,-185,156,1,75680192,75680531 -6 - chr15 75680658 75680752 chr15,75680658,75680818,+,MIRc,SINE,MIR,3,185,-83,75680656,75680901 +5 + chr15 75727717 75727803 chr15,75727717,75727803,-,L2c,LINE,L2,-31,3356,3276,75727686,75731078 +6 - chr15 75727845 75727996 chr15,75727845,75727996,+,MIR3,SINE,MIR,29,184,-24,75727817,75728020 -6 + chr15 75728762 75728819 chr15,75728762,75728819,+,GA-rich,Low_complexity,Low_complexity,1,58,0,75728762,75728819 -6 + chr15 75728970 75729281 chr15,75728970,75729281,+,AluJr,SINE,Alu,1,308,-4,75728970,75729285 -6 + chr15 75729819 75730061 chr15,75729819,75730061,-,AluJr,SINE,Alu,-21,291,1,75729798,75730061 +6 - chr15 75741722 75741775 chr15,75741513,75741851,+,THE1A,LTR,ERVL-MaLR,1,355,0,75741513,75741851 +3 + chr15 75758853 75759114 chr15,75758853,75759114,+,AluJb,SINE,Alu,42,298,-14,75758812,75759128 +6 + chr15 75759132 75759309 chr15,75759132,75759309,-,L1ME3B,LINE,L1,-318,5924,5745,75758814,75765053 -6 - chr15 75759755 75759856 chr15,75759755,75759856,+,MIRc,SINE,MIR,1,105,-163,75759755,75760019 +6 + chr15 75759755 75759856 chr15,75759755,75759856,+,MIRc,SINE,MIR,1,105,-163,75759755,75760019 -6 + chr15 75760034 75760129 chr15,75760034,75760129,+,MIRc,SINE,MIR,164,253,-15,75759871,75760144 +6 + chr15 75760034 75760129 chr15,75760034,75760129,+,MIRc,SINE,MIR,164,253,-15,75759871,75760144 -6 + chr15 75760403 75760632 chr15,75760403,75760632,-,MamGypLTR3,LTR,Gypsy,-472,422,169,75759931,75760800 +6 - chr15 75760794 75761104 chr15,75760794,75761104,-,MER58B,DNA,hAT-Charlie,0,341,27,75760794,75761130 +6 - chr15 76174891 76175167 chr15,76174556,76175167,-,L1MB7,LINE,L1,-63,6121,5502,76174493,76180668 +5 - chr15 76175169 76175362 chr15,76175169,76175362,-,MLT1J,LTR,ERVL-MaLR,-290,222,30,76174879,76175391 +6 - chr15 76175732 76175926 chr15,76175732,76175926,-,MIRc,SINE,MIR,-6,202,2,76175726,76175927 +6 - chr15 76176215 76176332 chr15,76176215,76176332,+,MIR3,SINE,MIR,35,152,-56,76176181,76176388 -6 + chr15 76181077 76181268 chr15,76181077,76181268,-,MIR3,SINE,MIR,-7,201,5,76181070,76181272 +6 - chr15 77043680 77043837 chr15,77043398,77044101,+,L1MC4,LINE,L1,7353,8041,-1,77036046,77044102 +1 + chr15 77045077 77045160 chr15,77045077,77045369,+,L2c,LINE,L2,2429,2739,-680,77042649,77046049 +5 + chr15 77063397 77063511 chr15,77063384,77063511,-,FLAM_A,SINE,Alu,-14,128,1,77063370,77063511 +5 - chr15 77064139 77064176 chr15,77064139,77064176,+,GA-rich,Low_complexity,Low_complexity,1,37,0,77064139,77064176 -6 + chr15 77067894 77068100 chr15,77067894,77068100,+,MIRb,SINE,MIR,31,266,-2,77067864,77068102 -6 + chr15 77484322 77484347 chr15,77484322,77484347,+,(TTGTTT)n,Simple_repeat,Simple_repeat,1,25,0,77484322,77484347 -6 + chr15 77525888 77526035 chr15,77525888,77526035,-,MIR3,SINE,MIR,-39,191,25,77525849,77526059 -6 - chr15 77531103 77531211 chr15,77531100,77531211,+,MIR3,SINE,MIR,21,130,-78,77531080,77531289 +2 + chr15 77531334 77531422 chr15,77531334,77531422,+,MIRc,SINE,MIR,74,153,-115,77531261,77531537 +6 + chr15 77531927 77532016 chr15,77531927,77532016,-,Charlie4z,DNA,hAT-Charlie,-3,164,76,77531924,77532091 -6 - chr15 77532433 77532597 chr15,77532433,77532597,-,MIRb,SINE,MIR,-70,198,20,77532363,77532616 -6 - chr15 77532631 77532685 chr15,77532631,77532685,-,L2b,LINE,L2,-22,3353,3303,77532609,77535987 -6 - chr15 77532752 77532871 chr15,77532752,77532871,-,MIRb,SINE,MIR,0,268,148,77532752,77533018 -6 - chr15 77533684 77533788 chr15,77533684,77533788,+,(CCTCT)n,Simple_repeat,Simple_repeat,1,108,0,77533684,77533788 +6 + chr15 77568970 77568997 chr15,77568900,77568997,-,L1ME4b,LINE,L1,0,892,802,77568900,77569798 -1 - chr15 77572926 77573037 chr15,77572926,77573153,+,MIR,SINE,MIR,15,248,-14,77572912,77573167 +5 + chr15 77608540 77608888 chr15,77608431,77608930,+,MLT1G1,LTR,ERVL-MaLR,16,574,-5,77608416,77608935 +5 + chr15 77641864 77641957 chr15,77641864,77642096,+,MIRb,SINE,MIR,6,255,-13,77641859,77642109 +4 + chr15 77648103 77648162 chr15,77648103,77648162,-,MIR3,SINE,MIR,-25,183,115,77648078,77648276 -6 - chr15 77648198 77648398 chr15,77648198,77648398,-,MIRb,SINE,MIR,-1,261,42,77648197,77648439 -5 - chr15 77651732 77651860 chr15,77651732,77651860,-,OldhAT1,DNA,hAT-Ac,-1584,1264,1139,77650148,77652998 -6 - chr15 77652149 77652288 chr15,77652149,77652296,+,MIRc,SINE,MIR,92,268,0,77652058,77652296 +5 + chr15 77660081 77660183 chr15,77660081,77660202,+,MIRc,SINE,MIR,94,202,-60,77659988,77660262 +4 + chr15 77667940 77668074 chr15,77667940,77668114,+,MIRc,SINE,MIR,11,204,-64,77667930,77668178 +5 + chr15 77784847 77784889 chr15,77784847,77784889,+,MIRc,SINE,MIR,84,125,-143,77784764,77785032 -6 + chr15 77785057 77785070 chr15,77785057,77785207,+,MIRb,SINE,MIR,101,256,-12,77784957,77785219 -1 + chr15 77788294 77788535 chr15,77788294,77788535,-,MIR,SINE,MIR,-7,255,4,77788287,77788538 -6 - chr15 77788535 77788661 chr15,77788535,77788661,+,L2b,LINE,L2,3239,3375,0,77785297,77788661 +5 + chr15 77954083 77954344 chr15,77954083,77954350,-,AluJb,SINE,Alu,-5,307,37,77954078,77954386 +2 - chr15 77963557 77963654 chr15,77963557,77963934,+,MER77B,LTR,ERVL,6,406,-294,77963552,77964228 -1 + chr15 78141243 78141371 chr15,78140970,78141371,+,MER20B,DNA,hAT-Charlie,13,441,-342,78140958,78141713 +1 + chr15 78141427 78141633 chr15,78141427,78141633,+,AluJo,SINE,Alu,1,206,-106,78141427,78141739 +6 + chr15 78141671 78141728 chr15,78141671,78141728,+,MER20B,DNA,hAT-Charlie,452,508,-275,78141220,78142003 +6 + chr15 78141838 78142095 chr15,78141838,78142095,+,MER20B,DNA,hAT-Charlie,515,782,-1,78141324,78142096 +6 + chr15 78142096 78142209 chr15,78142096,78142209,+,L2a,LINE,L2,3311,3424,-2,78138786,78142211 +6 + chr15 78142212 78142371 chr15,78142212,78142371,-,L2,LINE,L2,-842,2577,2410,78141370,78144780 -6 - chr15 78143076 78143173 chr15,78143076,78143387,+,L1MB7,LINE,L1,5695,6015,-169,78137382,78143556 +5 + chr15 78250502 78250773 chr15,78250495,78250792,+,AluJr,SINE,Alu,2,294,-18,78250494,78250810 -5 + chr15 78339981 78340118 chr15,78339981,78340118,-,L1MC5,LINE,L1,-6,9298,9161,78339975,78349278 +6 - chr15 78340381 78340428 chr15,78340381,78340428,+,(CCG)n,Simple_repeat,Simple_repeat,1,48,0,78340381,78340428 -6 + chr15 78340782 78340956 chr15,78340782,78340956,+,MIR3,SINE,MIR,15,179,-29,78340768,78340985 -6 + chr15 78341535 78341568 chr15,78341535,78341568,+,GA-rich,Low_complexity,Low_complexity,1,33,0,78341535,78341568 -6 + chr15 78480068 78480177 chr15,78480068,78480177,+,L2a,LINE,L2,3311,3426,0,78476758,78480177 -6 + chr15 78481700 78481799 chr15,78481664,78481799,-,AluSz,SINE,Alu,-176,136,1,78481488,78481799 +4 - chr15 78481799 78481820 chr15,78481799,78481832,+,AluJr,SINE,Alu,269,299,-13,78481531,78481845 -1 + chr15 78537681 78537780 chr15,78537599,78537780,-,MLT1G3,LTR,ERVL-MaLR,-10,585,400,78537589,78538179 -1 - chr15 78537806 78538360 chr15,78537806,78538360,-,LTR38B,LTR,ERV1,-23,587,1,78537783,78538360 -6 - chr15 78538360 78538682 chr15,78538360,78538682,-,MLT1G3,LTR,ERVL-MaLR,-188,407,35,78538172,78538716 -6 - chr15 78589123 78589260 chr15,78589116,78589260,+,Charlie16a,DNA,hAT-Charlie,78,241,-101,78589039,78589361 -5 + chr15 78591087 78591276 chr15,78591087,78591391,+,AluSz,SINE,Alu,1,303,-9,78591087,78591400 -1 + chr15 78599892 78600013 chr15,78599733,78600031,+,AluSx1,SINE,Alu,1,297,-15,78599733,78600046 -1 + chr15 78626341 78626385 chr15,78626341,78626385,+,(GT)n,Simple_repeat,Simple_repeat,1,44,0,78626341,78626385 +6 + chr15 78626584 78626830 chr15,78626584,78626830,+,MIRb,SINE,MIR,22,266,-2,78626563,78626832 +6 + chr15 78626973 78627039 chr15,78626973,78627039,-,MER5A1,DNA,hAT-Charlie,0,166,100,78626973,78627138 -6 - chr15 78627251 78627401 chr15,78627251,78627401,-,MER5A1,DNA,hAT-Charlie,-2,164,15,78627249,78627415 -6 - chr15 78627885 78628188 chr15,78627883,78628188,+,AluSq2,SINE,Alu,1,305,-8,78627883,78628196 +2 + chr15 78906127 78906165 chr15,78906064,78906165,+,ERVL-E-int,LTR,ERVL,3892,3999,-1715,78902173,78907880 +1 + chr15 78906199 78906445 chr15,78906199,78906445,+,MLT1G1,LTR,ERVL-MaLR,304,579,0,78905896,78906445 +6 + chr15 78906445 78906723 chr15,78906445,78906723,+,ERVL-E-int,LTR,ERVL,4187,4476,-1238,78902259,78907961 +6 + chr15 78906736 78906809 chr15,78906736,78907419,+,ERVL-E-int,LTR,ERVL,4516,5241,-426,78902221,78907845 +5 + chr15 78985205 78985620 chr15,78985205,78985620,+,L1M5,LINE,L1,4130,4594,-1552,78981076,78987172 +6 + chr15 78985633 78985926 chr15,78985633,78985951,+,AluSz,SINE,Alu,1,309,-3,78985633,78985954 +5 + chr15 79192074 79192102 chr15,79192074,79192214,-,LTR104_Mam,LTR,Gypsy,-302,1207,1060,79191772,79193273 +2 - chr15 79236566 79236622 chr15,79236474,79236622,-,L2,LINE,L2,-527,2892,2750,79235947,79239371 +5 - chr15 79260225 79260264 chr15,79260049,79260264,+,MER20,DNA,hAT-Charlie,1,218,-1,79260049,79260265 -4 + chr15 79832705 79832768 chr15,79832705,79832768,+,MLT1O,LTR,ERVL-MaLR,146,210,-332,79832560,79833100 -6 + chr15 79832888 79832975 chr15,79832888,79833321,-,LTR16,LTR,ERVL,0,489,6,79832888,79833326 +2 - chr15 79843693 79844440 chr15,79843693,79844440,-,L2c,LINE,L2,-30,3357,2548,79843663,79846987 +1 - chr15 79875920 79876330 chr15,79875916,79876330,+,L1M4a1,LINE,L1,711,1141,-1438,79875206,79877768 -5 + chr15 79876330 79876642 chr15,79876330,79876642,+,AluY,SINE,Alu,1,309,-2,79876330,79876644 -6 + chr15 79876642 79876762 chr15,79876642,79876762,+,L1M4a1,LINE,L1,1142,1255,-1324,79875501,79878086 -6 + chr15 79876762 79877059 chr15,79876762,79877059,+,AluSc,SINE,Alu,1,295,-14,79876762,79877073 -6 + chr15 79877059 79877419 chr15,79877059,79877419,+,L1M4a1,LINE,L1,1256,1598,-981,79875804,79878400 -6 + chr15 79877419 79877718 chr15,79877419,79877718,+,AluSc,SINE,Alu,2,298,-11,79877418,79877729 -6 + chr15 79877718 79878179 chr15,79877718,79878217,+,L1M4a1,LINE,L1,1599,2135,-444,79876120,79878661 -1 + chr15 79892874 79892912 chr15,79892670,79892970,+,AluSc,SINE,Alu,1,298,-11,79892670,79892981 -1 + chr15 79920195 79920814 chr15,79920193,79920814,-,LTR10E,LTR,ERV1,0,633,1,79920193,79920814 +5 - chr15 79921030 79921329 chr15,79921030,79921329,+,AluSx4,SINE,Alu,1,309,-1,79921030,79921330 -6 + chr15 79921734 79921982 chr15,79921734,79921982,+,AluY,SINE,Alu,1,246,-65,79921734,79922047 -6 + chr15 79921990 79922150 chr15,79921990,79922150,-,MIR,SINE,MIR,-58,204,14,79921932,79922163 +6 - chr15 79923093 79923134 chr15,79923093,79923134,+,(CCGCC)n,Simple_repeat,Simple_repeat,1,41,0,79923093,79923134 +6 + chr15 79924367 79924633 chr15,79924367,79924633,-,AluSx,SINE,Alu,-45,267,1,79924322,79924633 -6 - chr15 79925118 79925416 chr15,79925118,79925416,-,AluYk2,SINE,Alu,-11,300,1,79925107,79925416 -6 - chr15 79925930 79926993 chr15,79925930,79927231,+,LTR12C,LTR,ERV1,2,1579,0,79925929,79927231 +5 + chr15 79989938 79990083 chr15,79989938,79990083,+,MIR3,SINE,MIR,32,195,-13,79989907,79990096 +6 + chr15 79990140 79990297 chr15,79990140,79990297,+,L1MC5a,LINE,L1,2600,2765,-12,79987541,79990309 +6 + chr15 80014157 80014436 chr15,80014138,80014436,-,AluY,SINE,Alu,-12,299,1,80014126,80014436 -1 - chr15 80014436 80015132 chr15,80014436,80015132,-,L1MC1,LINE,L1,-866,5455,4773,80013570,80019904 -6 - chr15 80015132 80015539 chr15,80015132,80015539,-,MSTB,LTR,ERVL-MaLR,0,426,1,80015132,80015539 -6 - chr15 80015539 80015707 chr15,80015539,80015901,-,L1MC1,LINE,L1,-1549,4772,4423,80013990,80020323 -5 - chr15 80165923 80165934 chr15,80165730,80165934,+,L1ME3E,LINE,L1,5981,6185,-57,80159750,80165991 +1 + chr15 80165988 80166121 chr15,80165988,80166121,-,L1ME4b,LINE,L1,-23,869,750,80165965,80166870 -6 - chr15 80166121 80166396 chr15,80166121,80166433,-,AluJb,SINE,Alu,-9,303,1,80166112,80166433 -4 - chr15 80166899 80166934 chr15,80166630,80166934,-,AluYm1,SINE,Alu,-6,305,1,80166624,80166934 -2 - chr15 80166934 80166980 chr15,80166934,80167152,-,L1ME4b,LINE,L1,-982,5164,4957,80165952,80172108 -5 - chr15 80195484 80195793 chr15,80195441,80195793,-,MSTD,LTR,ERVL-MaLR,-8,388,1,80195433,80195793 +5 - chr15 80195836 80196091 chr15,80195836,80196091,+,ERVL-E-int,LTR,ERVL,4766,5032,-635,80191071,80196726 -6 + chr15 80196114 80196214 chr15,80196114,80196214,-,MER5A1,DNA,hAT-Charlie,-60,106,6,80196054,80196219 +6 - chr15 80196360 80196498 chr15,80196360,80196498,+,ERVL-E-int,LTR,ERVL,5125,5263,-404,80191236,80196902 -6 + chr15 80196737 80197051 chr15,80196737,80197051,+,LTR33,LTR,ERVL,64,376,-139,80196674,80197190 -6 + chr15 80197051 80197364 chr15,80197051,80197364,-,AluJo,SINE,Alu,-7,305,6,80197044,80197369 +6 - chr15 80197364 80197496 chr15,80197364,80197496,+,LTR33,LTR,ERVL,377,507,-8,80196988,80197504 -6 + chr15 80197569 80198004 chr15,80197569,80198004,+,MamGypLTR3a,LTR,Gypsy,518,973,-8,80197052,80198012 -6 + chr15 80198020 80198486 chr15,80198020,80198486,-,LTR85c,LTR,Gypsy?,-122,701,191,80197898,80198676 +6 - chr15 80198778 80199075 chr15,80198778,80199075,+,L1ME4c,LINE,L1,462,770,-60,80198317,80199135 -6 + chr15 80199203 80199362 chr15,80199203,80199362,-,MER5A1,DNA,hAT-Charlie,0,166,4,80199203,80199365 +6 - chr15 80200262 80200450 chr15,80200262,80200450,-,MIRb,SINE,MIR,-52,216,14,80200210,80200463 +6 - chr15 80200467 80200516 chr15,80200467,80200516,+,G-rich,Low_complexity,Low_complexity,1,50,0,80200467,80200516 -6 + chr15 80200660 80200771 chr15,80200660,80200771,-,MIR1_Amn,SINE,MIR,-78,152,42,80200582,80200812 +6 - chr15 80201028 80201175 chr15,80201028,80201175,+,L1ME4a,LINE,L1,5960,6121,-3,80195069,80201178 -6 + chr15 80252106 80252154 chr15,80252106,80252154,+,(GGCGC)n,Simple_repeat,Simple_repeat,1,50,0,80252106,80252154 -6 + chr15 80263068 80263153 chr15,80263001,80263153,+,L1ME4c,LINE,L1,668,826,-4,80262334,80263157 -5 + chr15 80263274 80263591 chr15,80263274,80263591,+,MLT1I,LTR,ERVL-MaLR,106,400,-11,80263169,80263602 -6 + chr15 80264325 80264631 chr15,80264325,80264631,-,AluSx,SINE,Alu,-9,303,2,80264316,80264632 +6 - chr15 80264959 80265060 chr15,80264959,80265060,-,MIR3,SINE,MIR,-61,147,43,80264898,80265102 +6 - chr15 80265087 80265211 chr15,80265087,80265211,+,L2b,LINE,L2,3247,3373,-2,80261841,80265213 -6 + chr15 80280222 80280273 chr15,80280222,80280492,-,L2a,LINE,L2,-10,3416,3149,80280212,80283640 +2 - chr15 80320999 80321355 chr15,80320830,80321361,-,MLT1F2,LTR,ERVL-MaLR,-3,557,3,80320827,80321363 +5 - chr15 80374852 80374930 chr15,80374852,80374930,-,L1ME3Cz,LINE,L1,-362,635,547,80374490,80375476 +6 - chr15 80374930 80375242 chr15,80374930,80375242,-,AluY,SINE,Alu,-2,309,1,80374928,80375242 +6 - chr15 80375242 80375473 chr15,80375242,80375473,-,L1ME3Cz,LINE,L1,-451,546,310,80374791,80375782 +6 - chr15 80375696 80375912 chr15,80375696,80375912,-,MER20,DNA,hAT-Charlie,0,219,1,80375696,80375912 +6 - chr15 80376879 80376970 chr15,80376879,80376970,-,L2b,LINE,L2,-21,3354,3243,80376858,80380212 +6 - chr15 80377077 80377149 chr15,80377077,80377149,+,MIR,SINE,MIR,13,88,-174,80377065,80377323 -6 + chr15 80377149 80377506 chr15,80377149,80377506,-,THE1D,LTR,ERVL-MaLR,0,381,3,80377149,80377508 +6 - chr15 80377506 80377638 chr15,80377506,80377638,+,MIRb,SINE,MIR,89,211,-57,80377418,80377695 -6 + chr15 80377753 80377824 chr15,80377753,80377824,-,MIR,SINE,MIR,0,262,195,80377753,80378018 +6 - chr15 80377813 80378714 chr15,80377813,80378714,-,L2a,LINE,L2,0,3426,2371,80377813,80381084 +6 - chr15 80378726 80378809 chr15,80378726,80378809,-,MIR,SINE,MIR,-60,202,113,80378666,80378921 +6 - chr15 80378987 80379350 chr15,80378987,80379350,+,MSTB1,LTR,ERVL-MaLR,57,430,-2,80378931,80379352 -6 + chr15 80433795 80434300 chr15,80433656,80434300,-,MER39B,LTR,ERV1,0,653,1,80433656,80434300 +5 - chr15 80444331 80445152 chr15,80444331,80445558,+,(GT)n,Simple_repeat,Simple_repeat,1,1304,0,80444331,80445558 -1 + chr15 80555214 80555584 chr15,80555214,80555584,-,L2c,LINE,L2,-31,3356,2953,80555183,80558536 +6 - chr15 80555687 80555965 chr15,80555687,80555965,+,AluSz6,SINE,Alu,1,283,-29,80555687,80555994 -6 + chr15 80555965 80555989 chr15,80555965,80555989,+,(CTCA)n,Simple_repeat,Simple_repeat,1,24,0,80555965,80555989 -6 + chr15 80556003 80556308 chr15,80556003,80556308,+,AluSx1,SINE,Alu,1,308,-4,80556003,80556312 -6 + chr15 80556337 80556588 chr15,80556337,80556588,-,L2c,LINE,L2,-570,2849,2562,80555767,80559149 +6 - chr15 80556645 80556870 chr15,80556645,80556870,-,MIRb,SINE,MIR,-8,260,28,80556637,80556897 +6 - chr15 80560056 80560167 chr15,80559944,80560264,+,L2c,LINE,L2,3000,3314,-73,80556945,80560337 -3 + chr15 80693233 80693527 chr15,80693233,80693527,-,AluSz,SINE,Alu,-17,295,2,80693216,80693528 +6 - chr15 80693581 80693601 chr15,80693581,80693601,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,80693581,80693601 -6 + chr15 80990804 80990927 chr15,80990791,80990927,-,L1ME3G,LINE,L1,-354,570,424,80990437,80991350 +5 - chr15 80990935 80991424 chr15,80990935,80991424,-,MLT1J,LTR,ERVL-MaLR,-9,503,16,80990926,80991439 +6 - chr15 80992163 80992186 chr15,80992163,80992186,+,(GAT)n,Simple_repeat,Simple_repeat,1,24,0,80992163,80992186 -6 + chr15 80992187 80992315 chr15,80992187,80992315,-,MIRc,SINE,MIR,-118,150,23,80992069,80992337 +6 - chr15 80992703 80992869 chr15,80992703,80992869,+,MamRep38,DNA,hAT,1,173,-122,80992703,80992991 -6 + chr15 80993060 80993170 chr15,80993060,80993170,-,MLT1O,LTR,ERVL-MaLR,-347,195,87,80992713,80993256 +6 - chr15 80993193 80993258 chr15,80993193,80993491,+,AluSx,SINE,Alu,1,298,-14,80993193,80993505 -1 + chr15 80999593 80999682 chr15,80999578,80999682,+,MER94,DNA,hAT-Blackjack,36,134,0,80999543,80999682 -5 + chr15 80999878 80999981 chr15,80999878,80999995,+,MIRc,SINE,MIR,12,144,-124,80999867,81000119 -1 + chr15 81060953 81061172 chr15,81060557,81061172,-,HAL1b,LINE,L1,-1796,625,49,81058761,81061220 -1 - chr15 81061268 81061528 chr15,81061268,81061528,-,L5,LINE,RTE-X,-535,1730,1487,81060733,81063014 -6 - chr15 81061686 81061807 chr15,81061686,81061807,+,MLT1K,LTR,ERVL-MaLR,216,335,-260,81061471,81062067 +6 + chr15 81062566 81062678 chr15,81062566,81062678,+,MER5B,DNA,hAT-Charlie,67,178,0,81062500,81062678 +6 + chr15 81062718 81063481 chr15,81062718,81063481,+,L2a,LINE,L2,2556,3426,0,81060163,81063481 +6 + chr15 81303322 81303487 chr15,81303322,81303487,-,MIRb,SINE,MIR,-44,224,27,81303278,81303513 +6 - chr15 81309331 81309391 chr15,81309157,81309594,-,MLT1G1,LTR,ERVL-MaLR,-60,519,1,81309097,81309594 +1 - chr15 81331911 81332023 chr15,81331558,81332203,+,MER50,LTR,ERV1,55,722,-12,81331504,81332215 +1 + chr15 81392797 81392894 chr15,81392797,81392894,-,MIRb,SINE,MIR,0,268,175,81392797,81393068 -6 - chr15 81393098 81393165 chr15,81393098,81393165,+,MLT1J2,LTR,ERVL-MaLR,263,329,-119,81392836,81393284 +6 + chr15 81403126 81403334 chr15,81403126,81403334,+,Charlie25,DNA,hAT-Charlie,52,268,-2256,81403075,81405590 +6 + chr15 81403403 81403570 chr15,81403403,81403620,+,L1ME1,LINE,L1,5945,6177,-2,81397459,81403622 +5 + chr15 81418984 81419127 chr15,81418968,81419172,+,MLT1B,LTR,ERVL-MaLR,188,388,-2,81418781,81419174 +5 + chr15 81427448 81427545 chr15,81427253,81427626,+,THE1D,LTR,ERVL-MaLR,1,381,0,81427253,81427626 +1 + chr15 81633887 81634180 chr15,81633729,81634196,+,MLT1D,LTR,ERVL-MaLR,1,505,0,81633729,81634196 -5 + chr15 81652232 81652343 chr15,81651030,81652830,+,MER52A,LTR,ERV1,1,1755,0,81651030,81652830 +1 + chr15 81653193 81653240 chr15,81653193,81653658,-,L1MEb,LINE,L1,-5543,527,56,81647650,81653713 -4 - chr15 81667127 81667181 chr15,81667127,81667198,-,MIR,SINE,MIR,-91,171,97,81667036,81667294 -4 - chr15 81668195 81668282 chr15,81668195,81668404,+,MIRb,SINE,MIR,8,209,-59,81668188,81668463 +4 + chr15 81688410 81688545 chr15,81688378,81688592,+,LTR33,LTR,ERVL,1,213,-302,81688378,81688894 +5 + chr15 81696406 81696730 chr15,81696315,81696730,-,MSTB1,LTR,ERVL-MaLR,0,432,5,81696315,81696734 -2 - chr15 81696730 81696780 chr15,81696730,81697149,+,L1M5,LINE,L1,2813,3301,-2845,81693918,81699994 +5 + chr15 81753580 81753727 chr15,81753549,81753727,+,MER20,DNA,hAT-Charlie,7,219,0,81753543,81753727 +2 + chr15 81755127 81755217 chr15,81755127,81755246,+,MER5B,DNA,hAT-Charlie,1,121,-57,81755127,81755303 +5 + chr15 81797930 81798124 chr15,81797930,81803963,+,L1PA2,LINE,L1,125,6155,0,81797806,81803963 -1 + chr15 81870928 81871125 chr15,81870667,81876699,+,L1PA2,LINE,L1,124,6155,0,81870544,81876699 -1 + chr15 81995427 81995666 chr15,81995166,82000000,+,L1HS,LINE,L1,124,4958,-1188,81995043,82001188 -1 + chr15 82092169 82092264 chr15,82092169,82092264,-,MIRb,SINE,MIR,-131,137,41,82092038,82092304 -6 - chr15 82092353 82092480 chr15,82092353,82092480,+,Arthur1A,DNA,hAT-Tip100,2,134,-43,82092352,82092523 +6 + chr15 82093394 82093494 chr15,82093373,82093640,-,MLT1A0,LTR,ERVL-MaLR,-60,305,27,82093313,82093666 -3 - chr15 82093983 82094234 chr15,82093781,82094459,+,Tigger7,DNA,TcMar-Tigger,2,705,0,82093780,82094459 +3 + chr15 82095482 82095609 chr15,82095239,82095609,+,LTR78B,LTR,ERV1,885,1285,-11,82094355,82095620 +2 + chr15 82095770 82095892 chr15,82095770,82095892,-,L1MC4,LINE,L1,0,8042,7921,82095770,82103812 -6 - chr15 82096205 82096329 chr15,82096205,82096329,-,L1MC4,LINE,L1,-212,7830,7709,82095993,82104037 -6 - chr15 82096329 82096436 chr15,82096329,82096640,-,AluSp,SINE,Alu,-1,312,1,82096328,82096640 -4 - chr15 82097448 82097616 chr15,82097423,82097616,-,AluJb,SINE,Alu,-13,299,86,82097410,82097701 -2 - chr15 82097624 82097694 chr15,82097624,82097830,-,L1ME3Cz,LINE,L1,-303,5821,5620,82097321,82103449 -5 - chr15 82540916 82540979 chr15,82540916,82541131,+,L2a,LINE,L2,3105,3393,-33,82537812,82541164 +4 + chr15 82562338 82562374 chr15,82562338,82562447,+,MER5A1,DNA,hAT-Charlie,51,166,0,82562288,82562447 +5 + chr15 82648054 82648100 chr15,82648054,82648100,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,46,0,82648054,82648100 +6 + chr15 82648181 82648283 chr15,82648181,82648283,+,MIR3,SINE,MIR,33,147,-61,82648149,82648344 +6 + chr15 82650029 82650145 chr15,82649943,82650145,-,MIR,SINE,MIR,0,268,15,82649943,82650159 -1 - chr15 82650359 82650434 chr15,82650359,82650434,-,MIRc,SINE,MIR,-131,137,65,82650228,82650498 -6 - chr15 82650860 82651165 chr15,82650860,82651165,+,AluY,SINE,Alu,1,301,-10,82650860,82651175 +6 + chr15 82651172 82651398 chr15,82651172,82651398,+,L1ME3G,LINE,L1,4955,5180,-966,82646218,82652364 +6 + chr15 82651398 82651684 chr15,82651398,82651684,-,AluSg,SINE,Alu,-14,296,9,82651384,82651692 -6 - chr15 82651684 82652050 chr15,82651684,82652050,+,L1ME3G,LINE,L1,5181,5474,-768,82646504,82652818 +6 + chr15 82652097 82652115 chr15,82652097,82652115,-,L1ME3,LINE,L1,-30,6132,6116,82652067,82658230 -6 - chr15 82652115 82652428 chr15,82652115,82652428,-,AluY,SINE,Alu,0,311,1,82652115,82652428 -6 - chr15 82652428 82652813 chr15,82652428,82652813,-,L1ME3,LINE,L1,-47,6115,5691,82652381,82658503 -6 - chr15 82652820 82653022 chr15,82652820,82653431,+,L1ME3E,LINE,L1,5556,6151,-91,82647265,82653522 +5 + chr15 82712411 82712518 chr15,82712411,82712518,-,MIRb,SINE,MIR,-72,196,83,82712339,82712600 +6 - chr15 82713003 82713293 chr15,82713003,82713293,-,AluSx3,SINE,Alu,-19,292,1,82712984,82713293 +6 - chr15 82713355 82713456 chr15,82713355,82713456,+,MER81,DNA,hAT-Blackjack,4,114,0,82713352,82713456 -6 + chr15 82713915 82714026 chr15,82713915,82714076,+,MIRc,SINE,MIR,26,192,-76,82713890,82714152 -1 + chr15 82738439 82738810 chr15,82738439,82738810,-,MLT1A,LTR,ERVL-MaLR,-2,372,1,82738437,82738810 -6 - chr15 82738889 82739030 chr15,82738889,82739030,-,MIR,SINE,MIR,-116,146,1,82738773,82739030 -6 - chr15 82744223 82744319 chr15,82744177,82744484,+,AluSx1,SINE,Alu,1,306,-6,82744177,82744490 +1 + chr15 82749296 82749384 chr15,82749089,82749384,-,AluSq2,SINE,Alu,-16,297,1,82749073,82749384 -2 - chr15 82749521 82749958 chr15,82749521,82749958,+,MLT1C,LTR,ERVL-MaLR,6,467,0,82749516,82749958 +6 + chr15 82752884 82752933 chr15,82752810,82752933,+,AluJb,SINE,Alu,2,123,-189,82752809,82753122 +1 + chr15 82752946 82753011 chr15,82752946,82753011,+,(T)n,Simple_repeat,Simple_repeat,1,65,0,82752946,82753011 +6 + chr15 82753247 82753404 chr15,82753247,82753404,+,MERX,DNA,TcMar-Tigger,470,657,-99,82752778,82753503 +6 + chr15 82753440 82753506 chr15,82753440,82753506,-,U3,snRNA,snRNA,-145,72,5,82753295,82753510 -6 - chr15 82753707 82753799 chr15,82753707,82753799,-,Tigger12A,DNA,TcMar-Tigger,-4,815,722,82753703,82754520 -6 - chr15 82753812 82754025 chr15,82753812,82754025,-,Tigger12A,DNA,TcMar-Tigger,-368,225,5,82753444,82754029 -6 - chr15 82754204 82754499 chr15,82754204,82754499,-,AluSq2,SINE,Alu,-18,295,2,82754186,82754500 -6 - chr15 82754677 82754761 chr15,82754677,82754761,-,L2c,LINE,L2,-55,3332,3243,82754622,82758003 -6 - chr15 82755563 82755581 chr15,82755563,82755581,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,82755563,82755581 +6 + chr15 82925884 82926116 chr15,82925786,82926116,+,L2,LINE,L2,579,977,-2442,82925208,82928558 +1 + chr15 82926128 82926357 chr15,82926128,82926357,-,MLT1A0,LTR,ERVL-MaLR,0,365,136,82926128,82926492 -6 - chr15 82926357 82926405 chr15,82926357,82926405,+,MSTD,LTR,ERVL-MaLR,2,52,-344,82926356,82926749 +6 + chr15 82926405 82926617 chr15,82926405,82926707,+,AluSx,SINE,Alu,1,303,-9,82926405,82926716 +4 + chr15 83012661 83012722 chr15,83012170,83013331,-,L2c,LINE,L2,-560,2859,1363,83011610,83014693 -1 - chr15 83020115 83020278 chr15,83020007,83020278,+,AluJo,SINE,Alu,16,290,-22,83019992,83020300 +1 + chr15 83022236 83022349 chr15,83022052,83022349,-,AluJr,SINE,Alu,-22,290,2,83022030,83022350 +5 - chr15 83022571 83022607 chr15,83022390,83022679,+,AluSx,SINE,Alu,1,300,-12,83022390,83022691 +1 + chr15 83022390 83022478 chr15,83022390,83022679,+,AluSx,SINE,Alu,1,300,-12,83022390,83022691 -1 + chr15 83024126 83024170 chr15,83023882,83024170,-,AluJb,SINE,Alu,-27,285,1,83023855,83024170 +4 - chr15 83024170 83024336 chr15,83024170,83024415,-,L1M5,LINE,L1,-702,5422,5176,83023468,83029590 +1 - chr15 83061487 83061845 chr15,83061421,83061891,+,MLT1H2,LTR,ERVL-MaLR,3,489,0,83061419,83061891 +5 + chr15 83090321 83090396 chr15,83090112,83090396,+,AluSc,SINE,Alu,1,292,-17,83090112,83090413 +2 + chr15 83090568 83090709 chr15,83090568,83090709,+,MLT1L,LTR,ERVL-MaLR,115,271,-339,83090454,83091048 +6 + chr15 83090759 83090782 chr15,83090759,83090948,+,MLT1L,LTR,ERVL-MaLR,388,588,-22,83090372,83090970 +5 + chr15 83103424 83103443 chr15,83103211,83103521,+,AluSz,SINE,Alu,1,308,-4,83103211,83103525 +5 + chr15 83113617 83113663 chr15,83113585,83113663,-,MLT1H,LTR,ERVL-MaLR,-13,536,455,83113572,83114117 +5 - chr15 83179182 83179251 chr15,83178896,83179386,+,LTR53,LTR,ERVL,1,519,0,83178896,83179386 +1 + chr15 83179778 83179848 chr15,83179566,83179873,+,L2a,LINE,L2,3073,3424,-2,83176494,83179875 +3 + chr15 83180802 83180935 chr15,83180643,83180935,-,AluSz,SINE,Alu,-10,302,2,83180633,83180936 -1 - chr15 83185019 83185068 chr15,83185019,83185289,-,AluSx1,SINE,Alu,-11,301,35,83185008,83185323 -4 - chr15 83185934 83186068 chr15,83185711,83186261,+,MLT1F2,LTR,ERVL-MaLR,2,558,-2,83185710,83186263 +5 + chr15 83439420 83439445 chr15,83439383,83439688,-,AluY,SINE,Alu,-21,290,1,83439362,83439688 -5 - chr15 83962176 83962318 chr15,83961949,83962318,+,THE1B,LTR,ERVL-MaLR,1,364,0,83961949,83962318 +1 + chr15 83962318 83962583 chr15,83962318,83962589,+,HAL1b,LINE,L1,1883,2171,-250,83960436,83962839 +5 + chr15 84167343 84167375 chr15,84167343,84167375,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,84167343,84167375 -6 + chr15 84168278 84168312 chr15,84168278,84168312,+,(TG)n,Simple_repeat,Simple_repeat,1,34,0,84168278,84168312 -6 + chr15 84423735 84423791 chr15,84423656,84423791,+,MIRc,SINE,MIR,88,236,-32,84423569,84423823 +2 + chr15 84599572 84599803 chr15,84599572,84599816,+,AluSx,SINE,Alu,1,268,-44,84599572,84599860 -2 + chr15 84606362 84606404 chr15,84606256,84606404,-,MIRb,SINE,MIR,-38,230,47,84606218,84606450 +4 - chr15 84611689 84611763 chr15,84611466,84611763,+,AluSx1,SINE,Alu,1,307,-5,84611466,84611768 -5 + chr15 84611763 84611780 chr15,84611763,84611780,+,AluJb,SINE,Alu,297,311,-1,84611467,84611781 -6 + chr15 84614423 84614634 chr15,84614323,84614634,-,L1M7,LINE,L1,-4310,2001,1599,84610013,84616232 +4 - chr15 84614634 84614783 chr15,84614634,84614783,-,AluSx,SINE,Alu,-17,295,137,84614617,84614919 +6 - chr15 84614788 84614849 chr15,84614788,84614849,-,L1M7,LINE,L1,-4773,1538,1478,84610015,84616326 +6 - chr15 84614938 84614957 chr15,84614938,84614957,-,L1M7,LINE,L1,-4994,1317,1303,84609944,84616259 +6 - chr15 84614957 84614969 chr15,84614957,84615253,-,AluSx4,SINE,Alu,-16,294,1,84614941,84615253 +1 - chr15 84622097 84622164 chr15,84622097,84622164,-,X9_LINE,LINE,L1,-306,630,559,84621791,84622722 +6 - chr15 84622231 84622351 chr15,84622231,84622351,+,MIR1_Amn,SINE,MIR,23,151,-79,84622209,84622430 -6 + chr15 84623085 84623237 chr15,84623085,84623391,-,AluY,SINE,Alu,-10,301,1,84623075,84623391 +1 - chr15 84685884 84685938 chr15,84685793,84686101,-,AluSx1,SINE,Alu,-3,309,1,84685790,84686101 -1 - chr15 84686515 84686629 chr15,84686330,84686629,+,AluSz,SINE,Alu,3,303,-9,84686328,84686638 +2 + chr15 84686686 84686868 chr15,84686686,84686868,-,AluJo,SINE,Alu,0,312,133,84686686,84687000 -6 - chr15 84686868 84686946 chr15,84686868,84687171,-,AluSx1,SINE,Alu,-8,304,1,84686860,84687171 -5 - chr15 84753453 84753468 chr15,84753453,84753468,+,(TTTAA)n,Simple_repeat,Simple_repeat,1,15,0,84753453,84753468 +6 + chr15 84753468 84753517 chr15,84753468,84753772,-,AluSz,SINE,Alu,-8,304,1,84753460,84753772 -4 - chr15 84754470 84754502 chr15,84754277,84754571,+,AluSz,SINE,Alu,2,292,-20,84754276,84754591 +5 + chr15 85670688 85670750 chr15,85670688,85670750,+,L1MC4,LINE,L1,7536,7597,-445,85663153,85671195 -6 + chr15 85702144 85702239 chr15,85701963,85702239,+,AluSx3,SINE,Alu,1,274,-37,85701963,85702276 +2 + chr15 85702239 85702271 chr15,85702239,85702271,+,(CA)n,Simple_repeat,Simple_repeat,1,32,0,85702239,85702271 +6 + chr15 85744154 85744268 chr15,85744154,85744268,-,MIRb,SINE,MIR,-65,203,87,85744089,85744354 +6 - chr15 85750242 85750281 chr15,85750035,85750376,+,AluSz,SINE,Alu,1,293,-19,85750035,85750395 -5 + chr15 85750336 85750376 chr15,85750035,85750376,+,AluSz,SINE,Alu,1,293,-19,85750035,85750395 -5 + chr15 85754941 85755080 chr15,85754921,85755080,-,MIRb,SINE,MIR,-57,211,40,85754864,85755119 +5 - chr15 85756044 85756092 chr15,85756044,85756092,+,G-rich,Low_complexity,Low_complexity,1,49,0,85756044,85756092 -6 + chr15 85756208 85756237 chr15,85756208,85756276,+,AluSz,SINE,Alu,1,68,-244,85756208,85756520 -1 + chr15 86078883 86078985 chr15,86078883,86078985,-,MER5A1,DNA,hAT-Charlie,-30,136,6,86078853,86078990 +6 - chr15 86088108 86088190 chr15,86087978,86088190,-,MER58A,DNA,hAT-Charlie,0,224,1,86087978,86088190 +5 - chr15 86105040 86105200 chr15,86102338,86105200,-,L1MA4A,LINE,L1,-4143,3423,358,86098195,86105557 +5 - chr15 86109773 86109919 chr15,86109701,86109980,-,Arthur1B,DNA,hAT-Tip100,-657,568,265,86109044,86110244 +3 - chr15 86116581 86116717 chr15,86116373,86116894,+,MLT2B3,LTR,ERVL,1,554,0,86116373,86116894 -1 + chr15 86295679 86295747 chr15,86295679,86295747,-,MIRc,SINE,MIR,-195,73,5,86295484,86295751 +6 - chr15 86295916 86296003 chr15,86295916,86296003,+,(CA)n,Simple_repeat,Simple_repeat,1,87,0,86295916,86296003 -6 + chr15 86296215 86296248 chr15,86296215,86296248,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,86296215,86296248 -6 + chr15 86316880 86317036 chr15,86316880,86317036,+,LFSINE_Vert,SINE,tRNA,262,428,-31,86316619,86317067 -1 + chr15 86630488 86630610 chr15,86630488,86630610,-,MER5A1,DNA,hAT-Charlie,-2,164,8,86630486,86630617 +6 - chr15 86631057 86631136 chr15,86630853,86631251,-,MER48,LTR,ERV1,-4,403,1,86630849,86631251 +1 - chr15 86914443 86914506 chr15,86914339,86914506,-,MIRb,SINE,MIR,-72,196,14,86914267,86914519 -1 - chr15 86914578 86914763 chr15,86914578,86914763,-,MIR,SINE,MIR,-47,215,21,86914531,86914783 -6 - chr15 86915004 86915093 chr15,86915004,86915093,+,L2b,LINE,L2,3281,3375,0,86911724,86915093 +6 + chr15 86915426 86915777 chr15,86915426,86915777,+,L2a,LINE,L2,3016,3424,-2,86912411,86915779 +6 + chr15 86988337 86988426 chr15,86988223,86988479,-,L1M5,LINE,L1,-640,5603,5327,86987583,86993805 +1 - chr15 87042054 87042197 chr15,87041968,87043066,+,HERVH-int,LTR,ERV1,1911,2995,-4718,87040058,87047784 +1 + chr15 87046797 87046846 chr15,87046793,87046846,-,MER96,DNA,hAT-Tip100,0,175,123,87046793,87046968 -2 - chr15 87046881 87046924 chr15,87046881,87046924,+,MER96,DNA,hAT-Tip100,132,174,-1,87046750,87046925 +6 + chr15 87046924 87047161 chr15,87046924,87047348,+,MLT1H,LTR,ERVL-MaLR,76,627,0,87046849,87047348 +5 + chr15 87432058 87432102 chr15,87432016,87432224,-,MIR,SINE,MIR,-22,240,12,87431994,87432235 +5 - chr15 87576929 87577047 chr15,87576719,87577130,+,MSTC,LTR,ERVL-MaLR,3,428,0,87576717,87577130 +1 + chr15 87577725 87577764 chr15,87577725,87577829,-,MIRc,SINE,MIR,-154,114,28,87577571,87577856 -4 - chr15 87578180 87578326 chr15,87578180,87578326,+,(TC)n,Simple_repeat,Simple_repeat,1,146,0,87578180,87578326 +6 + chr15 87578325 87578349 chr15,87578325,87578349,+,(CA)n,Simple_repeat,Simple_repeat,1,24,0,87578325,87578349 +6 + chr15 87579572 87579866 chr15,87579572,87579978,+,L1MB8,LINE,L1,5790,6178,0,87573783,87579978 +5 + chr15 87703773 87703852 chr15,87703696,87704050,-,THE1A,LTR,ERVL-MaLR,0,355,1,87703696,87704050 +1 - chr15 88253382 88253478 chr15,88253382,88253488,+,MIRb,SINE,MIR,83,184,-84,88253300,88253572 +4 + chr15 88270139 88270261 chr15,88270139,88270261,-,MIRb,SINE,MIR,-109,159,26,88270030,88270286 -6 - chr15 88270586 88270629 chr15,88270586,88270629,+,(AGCATCC)n,Simple_repeat,Simple_repeat,1,44,0,88270586,88270629 +6 + chr15 88494440 88494583 chr15,88494267,88494583,-,AluY,SINE,Alu,-8,303,1,88494259,88494583 +5 - chr15 88494583 88494663 chr15,88494583,88494783,+,MIR,SINE,MIR,46,262,0,88494538,88494783 -2 + chr15 88501944 88502114 chr15,88501934,88502114,-,L1PB3,LINE,L1,-2,6152,5956,88501932,88508069 +5 - chr15 88502861 88502947 chr15,88502861,88502947,+,L2c,LINE,L2,3300,3386,-1,88499562,88502948 -6 + chr15 88502994 88503290 chr15,88502994,88503290,+,AluSz6,SINE,Alu,14,310,-2,88502981,88503292 -6 + chr15 88503519 88503599 chr15,88503519,88503599,+,MIRc,SINE,MIR,72,152,-116,88503448,88503715 -6 + chr15 88503650 88503715 chr15,88503650,88503715,-,MLT1F,LTR,ERVL-MaLR,0,548,485,88503650,88504199 +6 - chr15 88503715 88504007 chr15,88503715,88504007,+,AluJr,SINE,Alu,1,295,-17,88503715,88504024 -6 + chr15 88504007 88504431 chr15,88504007,88504431,-,MLT1F,LTR,ERVL-MaLR,-64,484,2,88503943,88504432 +6 - chr15 88504494 88504992 chr15,88504494,88504992,+,MER74A,LTR,ERVL,1,534,-24,88504494,88505016 -6 + chr15 88505057 88505714 chr15,88505057,88505714,-,Kanga1,DNA,TcMar-Tc2,-997,748,50,88504060,88505763 +6 - chr15 88505751 88505787 chr15,88505751,88505811,+,MIRb,SINE,MIR,204,259,-9,88505548,88505820 -1 + chr15 88585566 88586232 chr15,88585011,88586232,+,L1MC1,LINE,L1,5128,6332,-1,88579884,88586233 -5 + chr15 88603971 88604016 chr15,88603877,88604016,-,MER102b,DNA,hAT-Charlie,-190,151,2,88603687,88604017 +4 - chr15 88797795 88797877 chr15,88797795,88797877,+,(TGA)n,Simple_repeat,Simple_repeat,1,83,0,88797795,88797877 -6 + chr15 88798656 88798733 chr15,88798529,88798733,-,MIRb,SINE,MIR,-30,238,6,88798499,88798738 +4 - chr15 89041223 89041300 chr15,89040910,89041343,+,MLT1H2,LTR,ERVL-MaLR,32,463,-26,89040879,89041369 +1 + chr15 89070091 89070191 chr15,89070002,89070342,-,MLT1I,LTR,ERVL-MaLR,-10,401,44,89069992,89070385 -3 - chr15 89075296 89075322 chr15,89075295,89075322,+,(GAAT)n,Simple_repeat,Simple_repeat,1,27,0,89075295,89075322 +2 + chr15 89075329 89075384 chr15,89075329,89075709,-,L2c,LINE,L2,-222,3165,2787,89075107,89078495 -4 - chr15 89087563 89087736 chr15,89087534,89087736,-,MIR,SINE,MIR,-3,259,20,89087531,89087755 +5 - chr15 89335072 89335145 chr15,89335072,89335145,+,tRNA-Arg-CGA_,tRNA,tRNA,1,73,-3,89335072,89335148 +6 + chr15 89359169 89359203 chr15,89359169,89359203,+,(CCTC)n,Simple_repeat,Simple_repeat,1,34,0,89359169,89359203 +6 + chr15 89386596 89386661 chr15,89386335,89386661,-,AluJr4,SINE,Alu,-5,307,3,89386330,89386663 -1 - chr15 89395028 89395150 chr15,89394945,89395150,-,MIRb,SINE,MIR,-2,266,51,89394943,89395200 -5 - chr15 89395555 89395594 chr15,89395555,89395594,+,(TCC)n,Simple_repeat,Simple_repeat,1,39,0,89395555,89395594 +6 + chr15 89396258 89396714 chr15,89396258,89396714,+,L1MC4a,LINE,L1,5517,5925,-1957,89390742,89398671 +6 + chr15 89397558 89397593 chr15,89397558,89397593,+,(GGCAGG)n,Simple_repeat,Simple_repeat,1,35,0,89397558,89397593 +6 + chr15 89397742 89397931 chr15,89397742,89397931,-,MIR,SINE,MIR,-57,205,16,89397685,89397946 -6 - chr15 89505585 89505789 chr15,89505585,89505789,-,MIRb,SINE,MIR,-8,260,59,89505577,89505847 +6 - chr15 89508961 89509430 chr15,89507624,89509430,+,(TATATA)n,Simple_repeat,Simple_repeat,1,1983,0,89507624,89509430 +1 + chr15 89509466 89509506 chr15,89509466,89509506,+,(TA)n,Simple_repeat,Simple_repeat,1,40,0,89509466,89509506 +6 + chr15 89509652 89509963 chr15,89509652,89509963,+,MSTB2,LTR,ERVL-MaLR,15,364,-93,89509638,89510056 +6 + chr15 89510130 89510367 chr15,89510130,89510367,-,L2c,LINE,L2,-124,3251,3029,89510006,89513395 -6 - chr15 89510370 89510416 chr15,89510370,89510571,+,Charlie7a,DNA,hAT-Charlie,51,260,-12,89510320,89510583 +5 + chr15 89514773 89514833 chr15,89514773,89514972,+,L3b,LINE,CR1,4907,5094,-138,89509867,89515110 -2 + chr15 89518523 89518569 chr15,89518515,89518826,+,AluSg,SINE,Alu,2,308,-2,89518514,89518828 +1 + chr15 89523581 89523721 chr15,89523564,89523721,-,MER5A1,DNA,hAT-Charlie,-4,162,3,89523560,89523723 +4 - chr15 89523825 89524034 chr15,89523825,89524148,+,MLT1H,LTR,ERVL-MaLR,129,549,0,89523697,89524148 -1 + chr15 89579765 89579953 chr15,89579651,89579953,+,MSTC,LTR,ERVL-MaLR,1,423,-5,89579651,89579958 -5 + chr15 89580034 89580137 chr15,89580034,89580323,-,AluSq2,SINE,Alu,-30,283,1,89580004,89580323 +2 - chr15 89582212 89582297 chr15,89582041,89582340,+,AluSz,SINE,Alu,1,299,-13,89582041,89582353 -1 + chr15 89591503 89591757 chr15,89591447,89591757,+,AluSp,SINE,Alu,1,310,-3,89591447,89591760 +2 + chr15 89950760 89950878 chr15,89950583,89950878,-,AluY,SINE,Alu,-17,294,1,89950566,89950878 -1 - chr15 89950878 89951012 chr15,89950878,89951012,-,AluSg7,SINE,Alu,-175,134,1,89950703,89951012 -6 - chr15 89951079 89951183 chr15,89951079,89951183,-,L2c,LINE,L2,0,3426,3299,89951079,89954481 -6 - chr15 89951192 89951343 chr15,89951192,89951343,-,AluSx,SINE,Alu,-161,151,1,89951031,89951343 -6 - chr15 90025378 90025624 chr15,90025378,90025624,-,L1ME4a,LINE,L1,-8,6116,5863,90025370,90031486 -6 - chr15 90025818 90026003 chr15,90025818,90027073,+,L1MD,LINE,L1,2848,4201,-1945,90022971,90029018 +5 + chr15 90074518 90074690 chr15,90074518,90074690,-,MIR,SINE,MIR,0,262,66,90074518,90074755 +6 - chr15 90074739 90074985 chr15,90074739,90074985,-,L4_A_Mam,LINE,RTE-X,-87,4903,4647,90074652,90079631 +6 - chr15 90075238 90075539 chr15,90075238,90075539,+,AluJr,SINE,Alu,1,300,-12,90075238,90075551 -6 + chr15 90075585 90075802 chr15,90075585,90075802,-,L4_A_Mam,LINE,RTE-X,-1154,3836,3639,90074431,90079440 +6 - chr15 90075813 90075966 chr15,90075813,90075966,+,MER5A1,DNA,hAT-Charlie,1,166,0,90075813,90075966 -6 + chr15 90075976 90076144 chr15,90075976,90076144,-,MER5A,DNA,hAT-Charlie,-21,168,1,90075955,90076144 +6 - chr15 90076176 90076328 chr15,90076176,90076328,-,MER5B,DNA,hAT-Charlie,-18,160,6,90076158,90076333 +6 - chr15 90076424 90076452 chr15,90076424,90076452,+,U7,snRNA,snRNA,2,27,-36,90076423,90076488 -6 + chr15 90076452 90076644 chr15,90076452,90076758,+,AluSx,SINE,Alu,1,300,-12,90076452,90076770 -1 + chr15 90081735 90081759 chr15,90081735,90081759,+,(CCT)n,Simple_repeat,Simple_repeat,1,25,0,90081735,90081759 -6 + chr15 90103380 90103452 chr15,90103293,90103700,-,MER39B,LTR,ERV1,-208,445,5,90103085,90103704 -3 - chr15 90117980 90118076 chr15,90117950,90118076,-,FRAM,SINE,Alu,-6,170,33,90117944,90118108 -2 - chr15 90118086 90118097 chr15,90118086,90118485,-,L1MEd,LINE,L1,-3540,2606,2194,90114546,90120678 -4 - chr15 90133397 90133445 chr15,90133292,90133487,+,LTR7B,LTR,ERV1,206,463,-1,90133087,90133488 +5 + chr15 90393490 90393534 chr15,90393188,90393534,-,MER2,DNA,TcMar-Tigger,-1,344,1,90393187,90393534 +5 - chr15 90393534 90393583 chr15,90393534,90393583,-,MER5A,DNA,hAT-Charlie,-125,64,14,90393409,90393596 +6 - chr15 90393851 90393873 chr15,90393851,90394157,+,AluSp,SINE,Alu,1,305,-8,90393851,90394165 -2 + chr15 90397871 90397881 chr15,90397871,90398185,-,AluSq,SINE,Alu,-1,312,1,90397870,90398185 +1 - chr15 90595840 90596071 chr15,90595792,90596071,-,L2b,LINE,L2,0,3375,3100,90595792,90599170 +5 - chr15 90596086 90596200 chr15,90596086,90596283,-,L2a,LINE,L2,-5,3421,3216,90596081,90599498 +2 - chr15 90596335 90596369 chr15,90596255,90596369,-,L2a,LINE,L2,-268,3107,3000,90595987,90599368 +4 - chr15 90606777 90606872 chr15,90606591,90606969,-,Charlie1b,DNA,hAT-Charlie,-51,472,37,90606540,90607005 +3 - chr15 90620007 90620153 chr15,90619907,90620225,-,Tigger13a,DNA,TcMar-Tigger,-444,327,6,90619463,90620230 +5 - chr15 90650712 90650784 chr15,90650712,90650784,+,L2b,LINE,L2,3007,3082,-293,90647706,90651077 +6 + chr15 90650784 90651103 chr15,90650784,90651185,+,LTR47A,LTR,ERVL,3,452,0,90650782,90651185 +5 + chr15 90660234 90660493 chr15,90660024,90660493,+,MLT1F,LTR,ERVL-MaLR,1,526,-22,90660024,90660515 +1 + chr15 90661410 90661483 chr15,90661410,90661509,+,MER44A,DNA,TcMar-Tigger,2,101,-238,90661409,90661747 +4 + chr15 90664355 90664499 chr15,90664331,90664499,+,L1M6,LINE,L1,1560,1720,-4776,90662772,90669275 +2 + chr15 90664623 90664740 chr15,90664623,90664740,+,AluJb,SINE,Alu,1,117,-195,90664623,90664935 +5 + chr15 90664740 90664775 chr15,90664740,90664775,+,(ACAAA)n,Simple_repeat,Simple_repeat,1,35,0,90664740,90664775 +6 + chr15 90664775 90664950 chr15,90664775,90664950,+,AluJb,SINE,Alu,119,303,-9,90664657,90664959 +6 + chr15 90713280 90713299 chr15,90713280,90713538,-,L2c,LINE,L2,-101,3325,3032,90713179,90716569 +2 - chr15 90714921 90715042 chr15,90714762,90715063,+,AluSx,SINE,Alu,1,300,-12,90714762,90715075 -3 + chr15 90841250 90841308 chr15,90841250,90841308,+,L2b,LINE,L2,3028,3086,-289,90838223,90841597 +6 + chr15 90841308 90841378 chr15,90841308,90841501,-,LTR37A,LTR,ERV1,-3,423,233,90841305,90841733 -5 - chr15 90920861 90921186 chr15,90920861,90921223,+,L1M5,LINE,L1,3875,4272,-1874,90916987,90923097 -1 + chr15 90932756 90932806 chr15,90932756,90932953,-,L2c,LINE,L2,-47,3340,3137,90932709,90936089 +2 - chr15 90952239 90952424 chr15,90952190,90952424,-,MSTA,LTR,ERVL-MaLR,-1,427,203,90952189,90952626 +5 - chr15 90952424 90952724 chr15,90952424,90952724,-,AluSz,SINE,Alu,-17,295,1,90952407,90952724 +6 - chr15 90952724 90952900 chr15,90952724,90952900,-,MSTA,LTR,ERVL-MaLR,-226,202,2,90952498,90952901 +6 - chr15 90954335 90954607 chr15,90954333,90954607,+,AluSz6,SINE,Alu,3,288,-24,90954331,90954631 -4 + chr15 91022701 91022740 chr15,91022701,91022863,+,AluSx3,SINE,Alu,145,308,-3,91022557,91022866 +1 + chr15 91022766 91022863 chr15,91022701,91022863,+,AluSx3,SINE,Alu,145,308,-3,91022557,91022866 +1 + chr15 91022866 91023200 chr15,91022866,91023282,+,L1MC5a,LINE,L1,1998,2457,-320,91020869,91023602 +5 + chr15 91023313 91023592 chr15,91023282,91023592,-,AluSz,SINE,Alu,-7,305,1,91023275,91023592 -2 - chr15 91023592 91023716 chr15,91023592,91023716,+,L1MC5a,LINE,L1,2458,2589,-188,91021135,91023904 +5 + chr15 91023718 91023971 chr15,91023718,91023985,+,AluJr,SINE,Alu,1,281,-31,91023718,91024016 +4 + chr15 91030209 91030241 chr15,91030209,91030295,+,MIRb,SINE,MIR,19,106,-162,91030191,91030457 +4 + chr15 91035442 91035739 chr15,91035442,91035739,+,AluSz,SINE,Alu,1,300,-12,91035442,91035751 +6 + chr15 91035849 91035970 chr15,91035849,91035970,-,MER5A,DNA,hAT-Charlie,-32,146,20,91035817,91035989 -6 - chr15 91036550 91036611 chr15,91036550,91036659,+,AluSp,SINE,Alu,199,307,-6,91036352,91036665 +5 + chr15 91408708 91408747 chr15,91408656,91408747,-,MIRc,SINE,MIR,-109,159,78,91408547,91408824 -1 - chr15 91463337 91463631 chr15,91463280,91463713,+,MSTA,LTR,ERVL-MaLR,1,428,0,91463280,91463713 +1 + chr15 91473221 91473316 chr15,91473021,91473394,+,THE1D,LTR,ERVL-MaLR,1,381,0,91473021,91473394 +3 + chr15 91489387 91489477 chr15,91489302,91489968,-,L1ME1,LINE,L1,-142,6037,5357,91489160,91495324 -3 - chr15 91493299 91493361 chr15,91493299,91493361,-,MER44A,DNA,TcMar-Tigger,-277,62,1,91493022,91493361 -6 - chr15 91493361 91493952 chr15,91493361,91493952,+,L1MCa,LINE,L1,2105,2772,-4265,91491257,91498217 +6 + chr15 91493958 91494068 chr15,91493958,91494068,-,L1MC,LINE,L1,-1286,4860,4743,91492672,91498810 -6 - chr15 91494068 91494352 chr15,91494068,91494352,+,AluSc,SINE,Alu,26,309,0,91494043,91494352 +6 + chr15 91494352 91494850 chr15,91494352,91494995,-,L1MC,LINE,L1,-1404,4742,4031,91492948,91499025 -5 - chr15 91604989 91605130 chr15,91604989,91605130,+,L3b,LINE,CR1,4954,5094,-138,91600036,91605268 +6 + chr15 91643017 91643285 chr15,91642224,91643285,-,L1PA5,LINE,L1,-13,6141,5078,91642211,91648362 +5 - chr15 91644738 91644762 chr15,91644328,91644762,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,91644328,91644762 -4 + chr15 91644762 91644858 chr15,91644762,91644858,+,MLT1H1,LTR,ERVL-MaLR,485,554,-1,91644278,91644859 -6 + chr15 91644858 91644878 chr15,91644858,91644932,+,MIR3,SINE,MIR,114,187,-21,91644745,91644953 -2 + chr15 91649046 91649114 chr15,91648975,91649445,+,MLT1N2,LTR,ERVL-MaLR,3,459,-103,91648973,91649548 -1 + chr15 92148752 92148849 chr15,92148496,92148849,+,L1ME4c,LINE,L1,190,551,-279,92148307,92149128 -5 + chr15 92149550 92149650 chr15,92149550,92149650,-,MIRc,SINE,MIR,-145,123,25,92149405,92149674 +6 - chr15 92313048 92313185 chr15,92313048,92313219,+,AluJb,SINE,Alu,138,311,-1,92312911,92313220 -2 + chr15 92567818 92568188 chr15,92567771,92568188,-,MSTB,LTR,ERVL-MaLR,-2,424,3,92567769,92568190 +5 - chr15 92592574 92593204 chr15,92592441,92593204,-,Charlie21a,DNA,hAT-Charlie,-291,922,133,92592150,92593336 +5 - chr15 92593794 92594715 chr15,92593794,92594715,+,L1ME4a,LINE,L1,4179,5129,-1017,92589616,92595732 -6 + chr15 92595074 92595147 chr15,92595074,92595147,+,LTR16B1,LTR,ERVL,37,107,-373,92595038,92595520 -6 + chr15 92595318 92595384 chr15,92595318,92595384,+,ERV3-16A3_LTR,LTR,ERVL,294,361,-61,92595025,92595445 -6 + chr15 92595412 92595463 chr15,92595412,92595463,+,L1ME4a,LINE,L1,5522,5572,-552,92589891,92596015 -6 + chr15 92595463 92595811 chr15,92595463,92595811,+,L1ME4a,LINE,L1,5754,6119,-5,92589710,92595816 -5 + chr15 92600170 92600545 chr15,92600170,92600587,+,MLT1J1,LTR,ERVL-MaLR,27,423,-21,92600144,92600608 +5 + chr15 92619758 92620015 chr15,92619758,92620090,-,MER58B,DNA,hAT-Charlie,-1,340,1,92619757,92620090 -5 - chr15 92699040 92699163 chr15,92698378,92699164,-,MER57A-int,LTR,ERV1,-5414,773,1,92692964,92699164 +5 - chr15 92724218 92724277 chr15,92724218,92724390,-,LTR33,LTR,ERVL,-154,361,82,92724064,92724471 +1 - chr15 92779757 92780156 chr15,92779719,92780156,-,LTR7C,LTR,ERV1,-1,470,1,92779718,92780156 +5 - chr15 92780464 92780605 chr15,92780464,92780605,-,AluJr,SINE,Alu,-176,136,1,92780288,92780605 +6 - chr15 92780794 92780812 chr15,92780794,92780812,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,92780794,92780812 -6 + chr15 92781239 92781364 chr15,92781239,92781364,+,AluSx,SINE,Alu,6,133,-179,92781234,92781543 -6 + chr15 92781364 92781492 chr15,92781364,92781661,+,AluSx,SINE,Alu,1,298,-14,92781364,92781675 -1 + chr15 92805982 92806114 chr15,92805982,92806114,-,FLAM_C,SINE,Alu,-10,133,1,92805972,92806114 +2 - chr15 92808874 92809040 chr15,92808874,92809040,+,AluJr,SINE,Alu,138,306,-6,92808737,92809046 +6 + chr15 92882777 92882821 chr15,92882777,92882821,+,GA-rich,Low_complexity,Low_complexity,1,45,0,92882777,92882821 +6 + chr15 92883098 92883133 chr15,92883098,92883133,+,G-rich,Low_complexity,Low_complexity,1,35,0,92883098,92883133 +6 + chr15 92886569 92886588 chr15,92886569,92886588,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,92886569,92886588 +6 + chr15 93206066 93206089 chr15,93206062,93206089,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,93206062,93206089 +1 + chr15 93206669 93206766 chr15,93206669,93206766,-,L1PA17,LINE,L1,-10,6156,6060,93206659,93212825 -6 - chr15 93207284 93207482 chr15,93207284,93207482,+,MIRc,SINE,MIR,3,211,-57,93207282,93207539 +6 + chr15 93207484 93207783 chr15,93207484,93207783,+,AluSx1,SINE,Alu,1,294,-18,93207484,93207801 +6 + chr15 93207828 93208048 chr15,93207828,93208063,+,AluJr,SINE,Alu,71,299,-13,93207758,93208076 +5 + chr15 93257198 93257245 chr15,93257139,93257245,+,MIRb,SINE,MIR,84,185,-83,93257056,93257328 +1 + chr15 93257276 93257437 chr15,93257276,93257437,+,MER5A1,DNA,hAT-Charlie,1,165,-1,93257276,93257438 +6 + chr15 93260148 93260236 chr15,93259957,93260236,-,AluSx,SINE,Alu,-33,279,1,93259924,93260236 -2 - chr15 93260236 93260362 chr15,93260236,93260362,+,MER44B,DNA,TcMar-Tigger,428,541,-9,93259809,93260371 +6 + chr15 93416850 93416863 chr15,93416734,93416863,-,L1PB4,LINE,L1,-7,6149,6023,93416727,93422885 +5 - chr15 93417083 93417208 chr15,93417083,93417208,+,L2c,LINE,L2,3260,3382,-5,93413824,93417213 -6 + chr15 93418703 93419072 chr15,93418703,93419072,+,THE1C,LTR,ERVL-MaLR,4,375,0,93418700,93419072 -6 + chr15 93530311 93530437 chr15,93530311,93530453,+,MIRc,SINE,MIR,17,162,-106,93530295,93530559 +5 + chr15 93553808 93554110 chr15,93553808,93554110,+,L2c,LINE,L2,3084,3387,0,93550725,93554110 +6 + chr15 93554462 93554870 chr15,93554462,93554985,+,LTR12,LTR,ERV1,1,592,-234,93554462,93555219 +5 + chr15 93592582 93592705 chr15,93592568,93592705,+,MER5A1,DNA,hAT-Charlie,3,158,-8,93592566,93592713 +2 + chr15 93718542 93718575 chr15,93718533,93718575,+,(ATTGTCA)n,Simple_repeat,Simple_repeat,1,42,0,93718533,93718575 -5 + chr15 93719379 93719730 chr15,93719379,93719730,+,MER2,DNA,TcMar-Tigger,1,344,-1,93719379,93719731 -6 + chr15 93720040 93720605 chr15,93720040,93720605,+,Tigger3c,DNA,TcMar-Tigger,1,601,-1,93720040,93720606 -6 + chr15 93720869 93720965 chr15,93720869,93720966,-,MER91C,DNA,hAT-Tip100,-37,103,4,93720832,93720969 +2 - chr15 93760667 93760785 chr15,93760596,93760785,-,MIR,SINE,MIR,-12,250,32,93760584,93760816 -2 - chr15 93760615 93760785 chr15,93760596,93760785,-,MIR,SINE,MIR,-12,250,32,93760584,93760816 +4 - chr15 93801445 93801568 chr15,93801368,93801568,-,MIRb,SINE,MIR,-18,250,23,93801350,93801590 +4 - chr15 93829077 93829174 chr15,93829077,93829390,-,LTR32,LTR,ERVL,-135,322,1,93828942,93829390 +1 - chr15 93863109 93863216 chr15,93862951,93863252,+,LTR88a,LTR,Gypsy?,232,533,-283,93862720,93863535 +1 + chr15 93863742 93863862 chr15,93863493,93863862,+,MSTB1,LTR,ERVL-MaLR,2,376,-56,93863492,93863918 +2 + chr15 93864051 93864155 chr15,93864051,93864676,-,L1PA15,LINE,L1,-29,6136,5513,93864022,93870188 -4 - chr15 93865421 93865573 chr15,93865421,93865573,+,MIRc,SINE,MIR,6,161,-47,93865416,93865620 +1 + chr15 93867598 93867701 chr15,93867598,93867701,+,MIRb,SINE,MIR,116,214,-54,93867483,93867755 +6 + chr15 93869691 93869744 chr15,93869584,93869744,-,MIRb,SINE,MIR,-77,191,32,93869507,93869775 -2 - chr15 93874310 93874332 chr15,93873214,93874332,-,L1MEg,LINE,L1,-4498,2345,1197,93868716,93875528 +5 - chr15 93874426 93874453 chr15,93874426,93874526,+,MIRb,SINE,MIR,106,223,-45,93874321,93874571 -2 + chr15 93882839 93882897 chr15,93882801,93882897,-,L2b,LINE,L2,0,3375,3271,93882801,93886167 -2 - chr15 93886176 93886362 chr15,93886087,93886362,+,MLT1J2,LTR,ERVL-MaLR,121,422,-22,93885967,93886384 +2 + chr15 93886362 93886743 chr15,93886362,93886813,+,L1ME2z,LINE,L1,5818,6273,-171,93880545,93886984 +5 + chr15 93890715 93890775 chr15,93890715,93890842,+,L1M7,LINE,L1,6,132,-6086,93890710,93896928 -2 + chr15 93896115 93896142 chr15,93896115,93896142,+,A-rich,Low_complexity,Low_complexity,1,27,0,93896115,93896142 -6 + chr15 93900701 93900778 chr15,93899800,93901385,-,MER52A,LTR,ERV1,0,1755,1,93899800,93901385 -1 - chr15 93900036 93900337 chr15,93899800,93901385,-,MER52A,LTR,ERV1,0,1755,1,93899800,93901385 +1 - chr15 93900351 93900599 chr15,93899800,93901385,-,MER52A,LTR,ERV1,0,1755,1,93899800,93901385 +1 - chr15 93905405 93905464 chr15,93905291,93905464,+,MIRc,SINE,MIR,44,223,-45,93905248,93905509 -5 + chr15 93905622 93905671 chr15,93905622,93905671,-,L2a,LINE,L2,-18,3408,3360,93905604,93909030 +6 - chr15 93905735 93906180 chr15,93905735,93906180,+,L2,LINE,L2,2323,2796,-623,93903413,93906803 -6 + chr15 93906272 93906289 chr15,93906272,93906314,+,L2a,LINE,L2,3374,3415,-11,93902899,93906325 +4 + chr15 93906272 93906314 chr15,93906272,93906314,+,L2a,LINE,L2,3374,3415,-11,93902899,93906325 -6 + chr15 93969594 93969695 chr15,93969551,93971437,-,L2a,LINE,L2,-1,3425,1259,93969550,93972695 -3 - chr15 94030293 94030401 chr15,94030143,94030600,-,MamRTE1,LINE,RTE-BovB,-65,3747,3237,94030078,94033836 +3 - chr15 94038351 94038412 chr15,94038274,94038629,-,THE1A,LTR,ERVL-MaLR,0,355,1,94038274,94038629 +1 - chr15 94064369 94064397 chr15,94064368,94064397,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,94064368,94064397 -5 + chr15 94064416 94064654 chr15,94064416,94064654,-,L2a,LINE,L2,-337,3082,2828,94064079,94067481 +6 - chr15 94064767 94064890 chr15,94064767,94064890,+,MLT1J-int,LTR,ERVL-MaLR,24,153,-1234,94064744,94066124 -6 + chr15 94064915 94065074 chr15,94064915,94065074,+,MLT1J-int,LTR,ERVL-MaLR,219,391,-996,94064697,94066070 -6 + chr15 94065210 94065292 chr15,94065210,94065540,+,MLT1J1,LTR,ERVL-MaLR,1,383,-61,94065210,94065601 -2 + chr15 94066834 94066879 chr15,94066834,94067148,-,MLT1J,LTR,ERVL-MaLR,-197,315,3,94066637,94067150 +2 - chr15 94070524 94070669 chr15,94070430,94070669,-,AmnSINE1,SINE,5S-Deu-L2,-5,570,347,94070425,94071015 +4 - chr15 94082387 94082516 chr15,94082387,94082516,-,MER5A,DNA,hAT-Charlie,-59,130,1,94082328,94082516 +6 - chr15 94082603 94082750 chr15,94082603,94082750,-,MIRb,SINE,MIR,-89,179,17,94082514,94082766 +6 - chr15 94099257 94099350 chr15,94099050,94099714,+,L1M4a2,LINE,L1,5,699,-1957,94099046,94101671 -1 + chr15 94600032 94600276 chr15,94600032,94600276,-,AluSz,SINE,Alu,-7,305,68,94600025,94600343 -6 - chr15 94841059 94841251 chr15,94840700,94841392,+,LTR27C,LTR,ERV1,1,1020,0,94840700,94841392 +1 + chr15 94856623 94856680 chr15,94856623,94856680,+,(GGCGGA)n,Simple_repeat,Simple_repeat,1,58,0,94856623,94856680 +6 + chr15 94856966 94856987 chr15,94856966,94856987,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,94856966,94856987 -6 + chr15 94901778 94901804 chr15,94901778,94901883,+,L3b,LINE,CR1,3967,4082,-17,94897812,94901900 +4 + chr15 94904440 94904567 chr15,94904412,94904569,-,AluJb,SINE,Alu,-6,306,156,94904406,94904724 -3 - chr15 95024985 95025084 chr15,95024889,95025093,-,L2c,LINE,L2,-2,3385,3182,95024887,95028274 -1 - chr15 95034384 95034744 chr15,95034366,95034795,-,LTR33,LTR,ERVL,-56,459,5,95034310,95034799 +5 - chr15 95080095 95080261 chr15,95079859,95080272,+,LTR16D2,LTR,ERVL,99,580,-71,95079761,95080343 -5 + chr15 95112332 95112390 chr15,95112043,95112558,+,MER1A,DNA,hAT-Charlie,4,529,0,95112040,95112558 +5 + chr15 95122925 95123013 chr15,95122685,95123067,-,L3,LINE,CR1,-8,4091,3713,95122677,95126779 -5 - chr15 95209099 95209398 chr15,95209045,95209398,-,MSTD,LTR,ERVL-MaLR,0,396,1,95209045,95209398 +5 - chr15 95209398 95209483 chr15,95209398,95209483,-,MER5A,DNA,hAT-Charlie,-62,127,35,95209336,95209517 +6 - chr15 95210399 95210426 chr15,95210399,95210426,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,95210399,95210426 -6 + chr15 95212681 95212864 chr15,95212608,95212864,-,MLT1E3,LTR,ERVL-MaLR,-1,623,381,95212607,95213244 +4 - chr15 95255506 95255760 chr15,95254365,95255760,-,L1MD1,LINE,L1,-4890,1743,830,95249475,95256589 +5 - chr15 95256674 95256776 chr15,95256463,95256820,-,L1MD1,LINE,L1,-6239,394,36,95250224,95256855 +1 - chr15 95274333 95274373 chr15,95274333,95274373,+,(TTTATAA)n,Simple_repeat,Simple_repeat,1,42,0,95274333,95274373 -6 + chr15 95274431 95274557 chr15,95274431,95274557,-,UCON26,Unknown,Unknown,-5,338,216,95274426,95274772 +6 - chr15 95274900 95274933 chr15,95274900,95274933,+,(CT)n,Simple_repeat,Simple_repeat,1,33,0,95274900,95274933 -6 + chr15 95275478 95275787 chr15,95275478,95275787,+,AluSc,SINE,Alu,1,307,-2,95275478,95275789 -6 + chr15 95276124 95276164 chr15,95276124,95276164,+,MIRc,SINE,MIR,46,85,-183,95276079,95276347 -6 + chr15 95276247 95276291 chr15,95276247,95276291,-,L2a,LINE,L2,-43,3383,3340,95276204,95279630 +6 - chr15 95276612 95276696 chr15,95276612,95276696,+,MIRc,SINE,MIR,170,253,-15,95276443,95276711 -6 + chr15 95276714 95276774 chr15,95276714,95276774,+,(AT)n,Simple_repeat,Simple_repeat,1,63,0,95276714,95276774 -6 + chr15 95276945 95276999 chr15,95276945,95276999,+,(GT)n,Simple_repeat,Simple_repeat,1,55,0,95276945,95276999 -6 + chr15 95279759 95279865 chr15,95279759,95279865,+,L2a,LINE,L2,3314,3424,-2,95276446,95279867 -6 + chr15 95280753 95280872 chr15,95280699,95280872,-,MIRb,SINE,MIR,-8,260,45,95280691,95280916 +5 - chr15 95281566 95281641 chr15,95281566,95281641,+,MIRc,SINE,MIR,188,263,-5,95281379,95281646 -6 + chr15 95282544 95282646 chr15,95282544,95282646,+,MER5B,DNA,hAT-Charlie,69,173,-5,95282476,95282651 -6 + chr15 95288408 95288468 chr15,95288408,95288484,+,MIR1_Amn,SINE,MIR,74,154,-76,95288335,95288560 -2 + chr15 95433095 95433179 chr15,95433019,95433198,-,MIRb,SINE,MIR,-8,260,77,95433011,95433274 -1 - chr15 95451905 95451936 chr15,95451905,95452221,+,UCON1,Unknown,Unknown,681,1011,-375,95451225,95452596 +4 + chr15 95453833 95453865 chr15,95453833,95453865,+,A-rich,Low_complexity,Low_complexity,1,32,0,95453833,95453865 +6 + chr15 95493650 95493770 chr15,95493568,95493961,-,MSTB,LTR,ERVL-MaLR,0,426,19,95493568,95493979 +1 - chr15 95501591 95501651 chr15,95501591,95501652,-,L2a,LINE,L2,-71,3355,3296,95501520,95504947 -4 - chr15 95506479 95506600 chr15,95506479,95506600,+,MIRb,SINE,MIR,70,193,-75,95506410,95506675 +6 + chr15 95506644 95506930 chr15,95506644,95506930,+,(CTAT)n,Simple_repeat,Simple_repeat,1,298,0,95506644,95506930 +6 + chr15 95506973 95507282 chr15,95506973,95507282,+,AluY,SINE,Alu,1,301,-10,95506973,95507292 +6 + chr15 95507417 95507847 chr15,95507417,95508323,-,L1ME1,LINE,L1,-54,6298,5383,95507363,95513705 -5 - chr15 95638346 95638514 chr15,95638216,95638514,-,AluYm1,SINE,Alu,-12,299,1,95638204,95638514 -1 - chr15 95712577 95712657 chr15,95712567,95712672,-,MIRb,SINE,MIR,-120,148,40,95712447,95712711 -3 - chr15 95716837 95716890 chr15,95716837,95716947,+,GA-rich,Low_complexity,Low_complexity,1,112,0,95716837,95716947 +5 + chr15 95810079 95810116 chr15,95809493,95810379,-,L1ME5,LINE,L1,-40,6408,5445,95809453,95815823 -3 - chr15 96028089 96028157 chr15,96027498,96028157,+,L1ME2,LINE,L1,5217,5919,-245,96022282,96028402 -5 + chr15 96028211 96028293 chr15,96028211,96028293,+,L1ME2,LINE,L1,6089,6173,-6,96022123,96028299 -6 + chr15 96028394 96028507 chr15,96028394,96028714,+,AluJr,SINE,Alu,3,312,0,96028392,96028714 -2 + chr15 96064277 96064426 chr15,96064023,96064542,-,MER77,LTR,ERVL,-6,598,59,96064017,96064600 +1 - chr15 96081188 96081332 chr15,96081188,96081332,+,MamRTE1,LINE,RTE-BovB,2656,2795,-1017,96078533,96082349 -6 + chr15 96081973 96081997 chr15,96081973,96081997,+,(GTGT)n,Simple_repeat,Simple_repeat,1,24,0,96081973,96081997 -6 + chr15 96082004 96082555 chr15,96082004,96082555,-,MLT1F2,LTR,ERVL-MaLR,0,560,2,96082004,96082556 +6 - chr15 96084554 96084584 chr15,96084554,96084708,+,MIRb,SINE,MIR,42,200,-68,96084513,96084776 -1 + chr15 96110254 96110381 chr15,96110254,96110381,+,MIRc,SINE,MIR,75,201,-67,96110180,96110448 -6 + chr15 96113240 96113444 chr15,96113240,96113444,+,L1ME4a,LINE,L1,5725,5943,-181,96107516,96113625 -6 + chr15 96113525 96113878 chr15,96113525,96113878,-,AluJo,SINE,Alu,-9,303,1,96113516,96113878 +6 - chr15 96113998 96114196 chr15,96113998,96114196,-,AluJo,SINE,Alu,-131,181,2,96113867,96114197 +6 - chr15 96114518 96114613 chr15,96114518,96114613,-,Tigger16b,DNA,TcMar-Tigger,-1,335,242,96114517,96114854 +6 - chr15 96118843 96118893 chr15,96118591,96118893,-,AluSc8,SINE,Alu,-9,302,1,96118582,96118893 +5 - chr15 96125985 96126062 chr15,96125874,96126062,-,LTR81A,LTR,Gypsy,-1048,302,89,96124826,96126150 +1 - chr15 96131822 96131845 chr15,96131786,96131845,+,MLT1L,LTR,ERVL-MaLR,60,118,-492,96131727,96132337 -4 + chr15 96135303 96135324 chr15,96135159,96135324,+,MER6A,DNA,TcMar-Tigger,1,210,-395,96135159,96135719 -4 + chr15 96135324 96135469 chr15,96135324,96136168,-,LTR12,LTR,ERV1,0,826,1,96135324,96136168 +1 - chr15 96139912 96140188 chr15,96139912,96140188,+,L2c,LINE,L2,3098,3387,0,96136815,96140188 -6 + chr15 96140210 96140452 chr15,96140210,96140785,-,LTR12_,LTR,ERV1,-133,555,2,96140077,96140786 +1 - chr15 96153541 96153611 chr15,96153541,96153632,+,L2b,LINE,L2,3252,3342,-33,96150290,96153665 -2 + chr15 96156486 96156555 chr15,96156445,96156555,-,L2b,LINE,L2,-55,3320,3197,96156390,96159751 +4 - chr15 96173881 96173977 chr15,96173881,96173977,+,MIR3,SINE,MIR,105,203,-5,96173777,96173982 +5 + chr15 96191352 96191365 chr15,96191197,96191365,-,MLT1J,LTR,ERVL-MaLR,-229,283,110,96190968,96191474 +4 - chr15 96235785 96235909 chr15,96235759,96236064,-,AluSg7,SINE,Alu,-5,304,1,96235754,96236064 -1 - chr15 96236382 96236440 chr15,96236157,96236440,+,AluJr,SINE,Alu,5,285,-27,96236153,96236467 +2 + chr15 96269758 96269808 chr15,96269758,96269808,+,A-rich,Low_complexity,Low_complexity,1,50,0,96269758,96269808 -6 + chr15 96272762 96272816 chr15,96272580,96273096,-,L2c,LINE,L2,-4,3383,2830,96272576,96275925 +5 - chr15 96285138 96285310 chr15,96285138,96285310,-,L3b,LINE,CR1,-350,4882,4706,96284788,96290015 +5 - chr15 96285441 96285601 chr15,96285441,96285601,+,MamRTE1,LINE,RTE-BovB,3408,3582,-230,96282034,96285831 -6 + chr15 96285955 96286038 chr15,96285955,96286038,+,MamTip2,DNA,hAT-Tip100,65,148,-157,96285891,96286195 -6 + chr15 96286923 96287168 chr15,96286923,96287168,-,MIRc,SINE,MIR,-3,265,6,96286920,96287173 +6 - chr15 96287273 96287338 chr15,96287273,96287338,-,L2a,LINE,L2,0,3426,3360,96287273,96290697 +6 - chr15 96287449 96287647 chr15,96287449,96287647,+,L2a,LINE,L2,3220,3424,-2,96284230,96287649 -6 + chr15 96287850 96288251 chr15,96287850,96288251,+,CR1-13_AMi,LINE,CR1,299,692,-32,96287552,96288283 -6 + chr15 96288950 96289254 chr15,96288950,96289254,+,AluSz,SINE,Alu,1,300,-12,96288950,96289266 -6 + chr15 96290444 96290457 chr15,96290393,96290457,+,A-rich,Low_complexity,Low_complexity,1,65,0,96290393,96290457 -5 + chr15 96295366 96295660 chr15,96295366,96295660,+,AluSg7,SINE,Alu,1,304,-5,96295366,96295665 -6 + chr15 96295679 96295758 chr15,96295679,96295758,-,MIR3,SINE,MIR,-54,154,76,96295625,96295833 +6 - chr15 96296038 96296188 chr15,96296038,96296188,-,MIR3,SINE,MIR,-16,192,17,96296022,96296204 +6 - chr15 96297506 96297679 chr15,96297506,96297679,-,MIRb,SINE,MIR,-8,260,80,96297498,96297758 +6 - chr15 96300816 96300846 chr15,96300816,96300846,+,(CTTTT)n,Simple_repeat,Simple_repeat,1,32,0,96300816,96300846 +6 + chr15 96327104 96327116 chr15,96327104,96327156,+,GA-rich,Low_complexity,Low_complexity,1,53,0,96327104,96327156 -1 + chr15 96354280 96354350 chr15,96354280,96354350,+,(CCCGCCC)n,Simple_repeat,Simple_repeat,1,72,0,96354280,96354350 +6 + chr15 96390491 96390787 chr15,96390491,96390787,-,AluJb,SINE,Alu,-10,302,1,96390481,96390787 -6 - chr15 96390820 96391035 chr15,96390820,96391035,-,MIRc,SINE,MIR,-17,251,44,96390803,96391078 -6 - chr15 96391056 96391276 chr15,96391056,96391276,+,MIRb,SINE,MIR,2,232,-30,96391055,96391306 +6 + chr15 96392019 96392325 chr15,96392019,96392325,-,L2c,LINE,L2,-62,3325,2998,96391957,96395322 -6 - chr15 96392515 96392732 chr15,96392515,96392732,-,MIR,SINE,MIR,-6,256,31,96392509,96392762 -6 - chr15 96393953 96394514 chr15,96393953,96394514,-,X6B_LINE,LINE,CR1,0,1072,484,96393953,96394997 -6 - chr15 96401453 96401571 chr15,96401310,96401605,+,AluJo,SINE,Alu,1,309,-3,96401310,96401608 -1 + chr15 96403510 96403687 chr15,96403459,96403687,-,MamSINE1,SINE,tRNA-RTE,-42,248,16,96403417,96403702 -2 - chr15 96443950 96444265 chr15,96443871,96444265,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,96443871,96444265 -2 - chr15 97272177 97272483 chr15,97272176,97272483,-,MLT1J,LTR,ERVL-MaLR,-54,458,116,97272122,97272598 +5 - chr15 97295881 97296313 chr15,97289925,97296313,-,L1PA3,LINE,L1,-3,6152,9,97289922,97296321 -1 - chr15 97296307 97296323 chr15,97296307,97296485,-,L1PB4,LINE,L1,-1717,5848,5680,97294590,97302164 -4 - chr15 97370552 97370581 chr15,97370552,97370581,+,A-rich,Low_complexity,Low_complexity,1,29,0,97370552,97370581 -6 + chr15 97370842 97370884 chr15,97370842,97370884,+,A-rich,Low_complexity,Low_complexity,1,42,0,97370842,97370884 -6 + chr15 97415790 97415824 chr15,97413295,97419473,-,L1PA4,LINE,L1,0,6328,177,97413295,97419649 -5 - chr15 97427651 97427926 chr15,97427460,97427926,-,MLT1D,LTR,ERVL-MaLR,0,505,21,97427460,97427946 +4 - chr15 97429770 97429889 chr15,97429596,97429926,+,MSTA,LTR,ERVL-MaLR,1,428,0,97429596,97429926 +3 + chr15 97521581 97521640 chr15,97521399,97521640,+,LFSINE_Vert,SINE,tRNA,206,443,-16,97521194,97521656 -4 + chr15 97533738 97533776 chr15,97533516,97533776,-,L2b,LINE,L2,-569,2850,2592,97532947,97536367 +5 - chr15 97534218 97534247 chr15,97534218,97534247,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,97534218,97534247 -6 + chr15 97535395 97535697 chr15,97535395,97535697,-,AluYa5,SINE,Alu,-9,302,1,97535386,97535697 +6 - chr15 97537797 97537832 chr15,97537797,97537832,+,(TTCAT)n,Simple_repeat,Simple_repeat,1,37,0,97537797,97537832 -6 + chr15 97538019 97538226 chr15,97538019,97538226,-,MIRb,SINE,MIR,-6,262,58,97538013,97538283 +6 - chr15 97538747 97539389 chr15,97538747,97539389,-,L2a,LINE,L2,-4,3422,2793,97538743,97542181 +6 - chr15 97539390 97539701 chr15,97539390,97539701,+,AluSz,SINE,Alu,1,305,-7,97539390,97539708 -6 + chr15 97539702 97539926 chr15,97539702,97539926,+,A-rich,Low_complexity,Low_complexity,1,230,0,97539702,97539926 -6 + chr15 97540287 97540326 chr15,97540287,97540326,+,(GT)n,Simple_repeat,Simple_repeat,1,39,0,97540287,97540326 -6 + chr15 97540344 97540409 chr15,97540344,97540409,+,(CATA)n,Simple_repeat,Simple_repeat,1,65,0,97540344,97540409 -6 + chr15 97540489 97540914 chr15,97540489,97540914,-,LTR16A,LTR,ERVL,0,451,1,97540489,97540914 +5 - chr15 97541106 97541476 chr15,97541106,97541580,-,ERV3-16A3_I-int,LTR,ERVL,-499,5215,4737,97540607,97546316 +1 - chr15 97541643 97541748 chr15,97541643,97541950,-,ERV3-16A3_I-int,LTR,ERVL,-757,4469,4156,97540886,97546105 +2 - chr15 97572404 97572572 chr15,97572404,97572572,+,MLT1L,LTR,ERVL-MaLR,121,266,-344,97572284,97572916 -6 + chr15 97631023 97631165 chr15,97630262,97631165,-,L1PA10,LINE,L1,-98,6070,5162,97630164,97636326 +5 - chr15 97631165 97631223 chr15,97631165,97631353,-,L3,LINE,CR1,-414,3685,3495,97630751,97634847 +2 - chr15 97647983 97648063 chr15,97646488,97648063,+,L1MC2,LINE,L1,4724,6328,-16,97641765,97648079 -5 + chr15 97648105 97648228 chr15,97648105,97648228,-,L2a,LINE,L2,-318,3108,2975,97647787,97651202 +6 - chr15 97665604 97665715 chr15,97665442,97665778,+,MLT2B5,LTR,ERVL,1,365,-352,97665442,97666130 -5 + chr15 97670236 97670337 chr15,97670144,97670604,-,L1ME3C,LINE,L1,-4605,2523,2070,97665539,97672673 +3 - chr15 97673131 97673257 chr15,97672063,97674339,-,L1M1,LINE,L1,-5262,2303,17,97666801,97674355 +3 - chr15 97703719 97703792 chr15,97703522,97703805,+,L1MD2,LINE,L1,6064,6339,-20,97697459,97703825 -1 + chr15 97703929 97703982 chr15,97703917,97703982,+,L2b,LINE,L2,3013,3077,-298,97700905,97704280 -4 + chr15 97742218 97742349 chr15,97742026,97742349,-,AluSz6,SINE,Alu,0,312,5,97742026,97742353 +5 - chr15 97742407 97742564 chr15,97742407,97742564,-,L1M5,LINE,L1,-334,5790,5633,97742073,97748196 +6 - chr15 97742595 97742801 chr15,97742595,97742801,-,L2a,LINE,L2,-161,3214,3024,97742434,97745824 +5 - chr15 97742845 97743392 chr15,97742845,97743392,+,LTR12C,LTR,ERV1,1030,1578,-1,97741816,97743393 -6 + chr15 97758608 97758650 chr15,97758608,97758650,+,(TTTCAGC)n,Simple_repeat,Simple_repeat,1,46,0,97758608,97758650 -6 + chr15 97876289 97876737 chr15,97875560,97876737,+,LTR12D,LTR,ERV1,1,1238,-16,97875560,97876753 +1 + chr15 97877178 97877285 chr15,97877178,97877285,+,MER81,DNA,hAT-Blackjack,6,112,-2,97877173,97877287 +6 + chr15 97983127 97983245 chr15,97983127,97983428,+,AluSx1,SINE,Alu,1,298,-14,97983127,97983442 -2 + chr15 97983336 97983409 chr15,97983127,97983428,+,AluSx1,SINE,Alu,1,298,-14,97983127,97983442 -3 + chr15 98046667 98046739 chr15,98046657,98046804,+,ERVL-B4-int,LTR,ERVL,2349,2490,-2736,98044309,98049540 -5 + chr15 98088628 98088664 chr15,98088628,98088664,+,(CCCCCT)n,Simple_repeat,Simple_repeat,1,36,0,98088628,98088664 -6 + chr15 98103301 98103712 chr15,98103301,98104789,-,LTR12C,LTR,ERV1,0,1579,2,98103301,98104790 +1 - chr15 98122563 98122595 chr15,98122521,98122595,-,LTR16C,LTR,ERVL,-2,487,417,98122519,98123011 +5 - chr15 98122595 98122798 chr15,98122595,98122973,-,MLT1B,LTR,ERVL-MaLR,0,390,1,98122595,98122973 +2 - chr15 98131434 98131561 chr15,98131194,98131561,+,LTR16C,LTR,ERVL,148,484,-5,98131047,98131566 -4 + chr15 98282075 98282120 chr15,98281848,98282204,+,THE1B,LTR,ERVL-MaLR,4,364,0,98281845,98282204 +1 + chr15 98284234 98284308 chr15,98284234,98284443,-,L2a,LINE,L2,-3,3423,3196,98284231,98287638 -4 - chr15 98285887 98285907 chr15,98285887,98286188,+,AluY,SINE,Alu,1,304,-7,98285887,98286195 +5 + chr15 98291636 98291700 chr15,98291636,98291878,-,MLT1L,LTR,ERVL-MaLR,-207,403,109,98291429,98291986 +2 - chr15 98319687 98319825 chr15,98319571,98319825,+,ORSL,DNA,hAT-Tip100,1,269,-6,98319571,98319831 -5 + chr15 98324273 98324420 chr15,98324093,98324630,-,MLT1F2,LTR,ERVL-MaLR,-13,547,1,98324080,98324630 +5 - chr15 98327354 98327459 chr15,98327051,98327459,-,L3,LINE,CR1,-61,4038,3599,98326990,98331057 +4 - chr15 98660591 98660668 chr15,98660591,98660689,+,MamRep434,DNA,TcMar-Tigger,269,371,-55,98660323,98660744 +5 + chr15 98880706 98880773 chr15,98880706,98880773,-,MER2,DNA,TcMar-Tigger,0,345,279,98880706,98881051 +6 - chr15 98965999 98966070 chr15,98965999,98966112,-,MIRc,SINE,MIR,-19,249,127,98965980,98966238 +2 - chr15 99028538 99028582 chr15,99028511,99028582,+,(TAGTT)n,Simple_repeat,Simple_repeat,1,71,0,99028511,99028582 +1 + chr15 99028582 99028867 chr15,99028582,99028867,-,AluJb,SINE,Alu,-27,285,1,99028555,99028867 -6 - chr15 99030943 99030966 chr15,99030943,99030966,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,99030943,99030966 +6 + chr15 99030973 99031053 chr15,99030973,99031151,+,MER58A,DNA,hAT-Charlie,2,183,-41,99030972,99031192 +5 + chr15 99105696 99105732 chr15,99105696,99105732,+,(CCGCCG)n,Simple_repeat,Simple_repeat,1,38,0,99105696,99105732 -6 + chr15 99130001 99130070 chr15,99130001,99130070,+,GA-rich,Low_complexity,Low_complexity,1,69,0,99130001,99130070 -6 + chr15 99139993 99140382 chr15,99139993,99140382,+,L1ME3C,LINE,L1,4668,5067,-1079,99135326,99141461 +6 + chr15 99140382 99140669 chr15,99140382,99140669,-,AluSx1,SINE,Alu,-24,288,1,99140358,99140669 -6 - chr15 99140669 99141039 chr15,99140669,99141190,+,L1ME3C,LINE,L1,5068,5606,-636,99135602,99141826 +4 + chr15 99145210 99145370 chr15,99145210,99145505,-,L2a,LINE,L2,-12,3414,3113,99145198,99148617 -5 - chr15 99157231 99157511 chr15,99157211,99157511,-,AluSx1,SINE,Alu,-12,300,1,99157199,99157511 +5 - chr15 99158102 99158226 chr15,99158102,99158226,-,MIRb,SINE,MIR,-120,148,32,99157982,99158257 +6 - chr15 99158893 99159064 chr15,99158893,99159064,+,MER91A,DNA,hAT-Tip100,4,195,-1,99158890,99159065 -6 + chr15 99159339 99159988 chr15,99159339,99159988,-,L2c,LINE,L2,-76,3311,2584,99159263,99162571 +6 - chr15 99160428 99160636 chr15,99160428,99160636,+,MER2,DNA,TcMar-Tigger,135,344,-1,99160294,99160637 -6 + chr15 99160636 99160679 chr15,99160636,99160679,+,(ATGT)n,Simple_repeat,Simple_repeat,1,43,0,99160636,99160679 -6 + chr15 99160732 99161031 chr15,99160732,99161031,+,AluSg7,SINE,Alu,1,298,-11,99160732,99161042 -6 + chr15 99161090 99161140 chr15,99161090,99161216,+,(AT)n,Simple_repeat,Simple_repeat,1,126,0,99161090,99161216 -1 + chr15 99395179 99395347 chr15,99394398,99395347,+,L1MB7,LINE,L1,4009,5074,-1570,99390390,99396917 -5 + chr15 99395337 99395393 chr15,99395337,99396453,+,L1MB7,LINE,L1,5449,6663,-19,99389889,99396472 -2 + chr15 99401250 99401315 chr15,99401166,99401522,-,THE1B,LTR,ERVL-MaLR,0,364,1,99401166,99401522 +1 - chr15 99416872 99416950 chr15,99416872,99416950,+,LTR50,LTR,ERVL,711,792,-3,99416162,99416953 +6 + chr15 99808017 99808079 chr15,99808017,99808079,+,MLT1K,LTR,ERVL-MaLR,505,574,-21,99807513,99808100 +6 + chr15 99812973 99813086 chr15,99812952,99813244,-,AluJb,SINE,Alu,-17,295,1,99812935,99813244 -3 - chr15 99839044 99839219 chr15,99839044,99839277,+,L2c,LINE,L2,3081,3318,-69,99835964,99839346 +5 + chr15 99976536 99976608 chr15,99976536,99976857,+,MLT1A,LTR,ERVL-MaLR,1,372,-2,99976536,99976859 +4 + chr15 99978737 99978893 chr15,99978737,99978893,+,MER5B,DNA,hAT-Charlie,17,174,-4,99978721,99978897 +6 + chr15 99979108 99979402 chr15,99979108,99979402,+,AluSg,SINE,Alu,1,294,-16,99979108,99979418 +6 + chr15 99979789 99980018 chr15,99979789,99980018,+,Kanga2_a,DNA,TcMar-Tc2,653,887,-1,99979137,99980019 +6 + chr15 99980038 99980340 chr15,99980038,99980340,+,AluSz6,SINE,Alu,1,302,-10,99980038,99980350 +6 + chr15 100129462 100129743 chr15,100129462,100129757,+,AluSp,SINE,Alu,2,297,-16,100129461,100129773 +5 + chr15 100344457 100344472 chr15,100343868,100344472,+,L1ME3G,LINE,L1,131,771,-153,100343738,100344625 -5 + chr15 100344528 100344674 chr15,100344528,100344674,+,MER4C,LTR,ERV1,5,150,-315,100344524,100344989 -6 + chr15 100344921 100345081 chr15,100344921,100345081,-,LTR33A_,LTR,ERVL,-346,185,24,100344575,100345104 +6 - chr15 100345098 100345341 chr15,100345098,100345341,+,L2,LINE,L2,187,439,-2980,100344912,100348321 -6 + chr15 100345381 100345627 chr15,100345381,100345814,+,MLT1J,LTR,ERVL-MaLR,97,512,0,100345285,100345814 -2 + chr15 100348734 100348866 chr15,100348488,100348866,-,MER41B,LTR,ERV1,-305,329,6,100348183,100348871 +4 - chr15 100348866 100348966 chr15,100348866,100348966,+,L1MB4,LINE,L1,6074,6180,0,100342793,100348966 -6 + chr15 100372939 100372992 chr15,100372868,100372993,+,GA-rich,Low_complexity,Low_complexity,1,122,0,100372868,100372993 +1 + chr15 100399835 100399925 chr15,100399835,100399966,+,MER5A,DNA,hAT-Charlie,38,168,-21,100399798,100399987 +1 + chr15 100408567 100408579 chr15,100408492,100408579,+,MER20B,DNA,hAT-Charlie,635,723,-60,100407858,100408639 +2 + chr15 100425992 100426083 chr15,100425785,100426111,+,MSTA,LTR,ERVL-MaLR,1,374,-54,100425785,100426165 +3 + chr15 100437778 100437896 chr15,100437675,100437896,-,MIR,SINE,MIR,0,262,3,100437675,100437898 -2 - chr15 100548571 100548593 chr15,100548571,100548593,+,(AC)n,Simple_repeat,Simple_repeat,1,22,0,100548571,100548593 -6 + chr15 100549180 100549212 chr15,100549180,100549212,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,100549180,100549212 -6 + chr15 100549839 100550136 chr15,100549839,100550136,-,AluSx1,SINE,Alu,-12,300,1,100549827,100550136 +6 - chr15 100716291 100716371 chr15,100716291,100716469,+,MER5C1,DNA,hAT-Charlie,7,187,-2635,100716285,100719104 +4 + chr15 100828126 100828348 chr15,100828100,100828348,+,HAL1,LINE,L1,1659,1907,-600,100826442,100828948 +2 + chr15 100828348 100828497 chr15,100828348,100829067,+,MER63C,DNA,hAT-Blackjack,3,676,-254,100828346,100829321 +5 + chr15 100850211 100850468 chr15,100850193,100850488,-,AluY,SINE,Alu,-16,295,1,100850177,100850488 -1 - chr15 100855231 100855348 chr15,100855200,100855507,-,AluSx1,SINE,Alu,-7,305,1,100855193,100855507 -3 - chr15 100859800 100860037 chr15,100859596,100860114,+,MLT1F1,LTR,ERVL-MaLR,1,569,0,100859596,100860114 +5 + chr15 100860156 100860254 chr15,100860118,100860503,+,MLT1I,LTR,ERVL-MaLR,8,411,0,100860111,100860503 +5 + chr15 100862421 100862454 chr15,100862421,100862454,+,G-rich,Low_complexity,Low_complexity,1,36,0,100862421,100862454 +6 + chr15 100862459 100862510 chr15,100862459,100862510,+,Tigger19b,DNA,TcMar-Tigger,303,349,-201,100862157,100862711 +6 + chr15 100862583 100862672 chr15,100862583,100862672,-,L2b,LINE,L2,-74,3301,3192,100862509,100865863 -6 - chr15 100862692 100862995 chr15,100862692,100862995,+,AluSz,SINE,Alu,1,303,-9,100862692,100863004 +6 + chr15 100864276 100864320 chr15,100864276,100864320,+,(AAAAGA)n,Simple_repeat,Simple_repeat,1,45,0,100864276,100864320 +6 + chr15 100865237 100865457 chr15,100865237,100865504,+,MLT1J,LTR,ERVL-MaLR,233,504,-8,100865005,100865512 +5 + chr15 100874061 100874369 chr15,100874061,100874408,+,MER121,DNA,hAT?,4,361,-40,100874058,100874448 +5 + chr15 100888472 100888563 chr15,100888408,100888563,-,MER113A,DNA,hAT-Charlie,-100,214,47,100888308,100888609 +5 - chr15 100888614 100888853 chr15,100888614,100888853,+,MIRb,SINE,MIR,3,268,0,100888612,100888853 -6 + chr15 100893231 100893478 chr15,100893231,100893478,-,L2b,LINE,L2,-205,3170,2919,100893026,100896396 +6 - chr15 100895181 100895478 chr15,100895181,100895478,+,AluY,SINE,Alu,14,310,-1,100895168,100895479 -6 + chr15 100895557 100895599 chr15,100895557,100895599,+,(AC)n,Simple_repeat,Simple_repeat,1,43,0,100895557,100895599 -6 + chr15 100913203 100913220 chr15,100913175,100913220,-,MER5A,DNA,hAT-Charlie,-61,128,91,100913114,100913310 +5 - chr15 100913220 100913711 chr15,100913220,100913711,-,MLT1D,LTR,ERVL-MaLR,-2,503,5,100913218,100913715 +6 - chr15 100913711 100913810 chr15,100913711,100913810,-,MER5A,DNA,hAT-Charlie,-99,90,1,100913612,100913810 +6 - chr15 100915280 100915314 chr15,100915280,100915314,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,100915280,100915314 -6 + chr15 101043741 101043837 chr15,101043741,101043837,+,MIR,SINE,MIR,125,219,-43,101043617,101043880 -6 + chr15 101043896 101043926 chr15,101043896,101043926,+,MIR,SINE,MIR,195,224,-38,101043702,101043964 -6 + chr15 101085699 101085920 chr15,101085625,101085920,-,AluSp,SINE,Alu,-15,298,2,101085610,101085921 +4 - chr15 101086055 101086066 chr15,101086055,101086099,+,MIR3,SINE,MIR,107,150,-58,101085949,101086157 -1 + chr15 101116697 101116766 chr15,101116697,101116766,-,MLT1A1,LTR,ERVL-MaLR,-64,531,459,101116633,101117224 -6 - chr15 101168530 101168599 chr15,101168479,101168599,-,MIRb,SINE,MIR,-77,191,71,101168402,101168669 -1 - chr15 101168633 101168646 chr15,101168633,101168811,-,MER63A,DNA,hAT-Blackjack,0,210,1,101168633,101168811 -4 - chr15 101299656 101299845 chr15,101299342,101299845,+,L1MC4,LINE,L1,7340,7886,-156,101292003,101300001 -5 + chr15 101299878 101300202 chr15,101299878,101300202,-,AluSz6,SINE,Alu,-17,295,1,101299861,101300202 +6 - chr15 101300223 101300429 chr15,101300223,101300429,+,L1M2,LINE,L1,3077,3297,-2846,101297147,101303275 -6 + chr15 101300695 101300905 chr15,101300695,101300905,-,MER20,DNA,hAT-Charlie,0,219,2,101300695,101300906 +6 - chr15 101301537 101301609 chr15,101301537,101301609,+,(CTAT)n,Simple_repeat,Simple_repeat,1,74,0,101301537,101301609 -6 + chr15 101301632 101301648 chr15,101301632,101301749,-,AluJo,SINE,Alu,-196,116,1,101301436,101301749 +1 - chr15 101303459 101303481 chr15,101303405,101303481,+,MLT1O,LTR,ERVL-MaLR,523,595,0,101302883,101303481 +2 + chr15 101305195 101305224 chr15,101305195,101305224,+,(TGGA)n,Simple_repeat,Simple_repeat,1,31,0,101305195,101305224 +6 + chr15 101305425 101305737 chr15,101305425,101305737,+,AluSq,SINE,Alu,1,312,-1,101305425,101305738 +5 + chr15 101337027 101337296 chr15,101336995,101337296,-,AluY,SINE,Alu,-2,309,1,101336993,101337296 -2 - chr15 101495052 101495068 chr15,101494815,101495068,+,L4_B_Mam,LINE,RTE-X,4491,4755,-186,101490325,101495254 -5 + chr15 101495087 101495567 chr15,101495087,101495595,-,MLT1L,LTR,ERVL-MaLR,0,610,50,101495087,101495644 +1 - chr15 101522635 101522796 chr15,101522635,101522796,-,L1ME3A,LINE,L1,-52,6121,5972,101522583,101528767 +6 - chr15 101523302 101523395 chr15,101523302,101523395,-,L2b,LINE,L2,-47,3328,3229,101523255,101526623 +6 - chr15 101524064 101524114 chr15,101524064,101524114,+,Alu,SINE,Alu,248,295,-6,101523817,101524120 -6 + chr15 101524125 101524248 chr15,101524125,101524248,-,HAL1ME,LINE,L1,-167,2298,2174,101523958,101526421 +6 - chr15 101524398 101524589 chr15,101524398,101524589,-,HAL1ME,LINE,L1,-285,2180,1975,101524113,101526563 +6 - chr15 101524704 101524734 chr15,101524704,101524996,+,AluSc8,SINE,Alu,1,292,-19,101524704,101525015 -2 + chr15 101744767 101744803 chr15,101744767,101744803,+,(CAAAAA)n,Simple_repeat,Simple_repeat,1,37,0,101744767,101744803 -6 + chr15 101955485 101955599 chr15,101955466,101955599,-,AluJr,SINE,Alu,-179,133,1,101955287,101955599 -2 - chr15 101955599 101955721 chr15,101955599,101955749,+,MIRb,SINE,MIR,91,255,-13,101955509,101955762 +5 + chr15 101956044 101956401 chr15,101956044,101956401,+,MLT1J2,LTR,ERVL-MaLR,41,448,0,101956004,101956401 +6 + chr15 101959848 101959982 chr15,101959826,101960005,-,MLT1A,LTR,ERVL-MaLR,-25,349,173,101959801,101960177 +5 - chr15 101960429 101960582 chr15,101960429,101960619,+,MER53,DNA,hAT,1,193,0,101960429,101960619 -1 + chr15 101960923 101961060 chr15,101960763,101961060,-,L1MB3,LINE,L1,-2,6181,5883,101960761,101966942 +4 - chr16 24473 24778 chr16,24473,24778,-,AluSp,SINE,Alu,-7,306,1,24466,24778 -6 - chr16 24861 24935 chr16,24861,24935,+,AluJo,SINE,Alu,240,312,0,24622,24935 +6 + chr16 74683 74961 chr16,74662,75026,+,LTR7,LTR,ERV1,1,448,-2,74662,75028 +5 + chr16 90728 90763 chr16,90728,90763,+,G-rich,Low_complexity,Low_complexity,1,35,0,90728,90763 +6 + chr16 90845 91096 chr16,90845,91096,+,AluSz,SINE,Alu,49,299,-13,90797,91109 +6 + chr16 126095 126324 chr16,126095,126423,+,AluSp,SINE,Alu,2,285,-28,126094,126451 +4 + chr16 127007 127171 chr16,126879,127171,-,AluSx3,SINE,Alu,-22,289,1,126857,127171 -2 - chr16 186022 186066 chr16,186022,186066,+,(ACGGAC)n,Simple_repeat,Simple_repeat,1,46,0,186022,186066 -6 + chr16 525155 525212 chr16,525013,525212,-,AluJb,SINE,Alu,-20,292,84,524993,525295 +5 - chr16 525650 525743 chr16,525650,525743,-,Tigger19b,DNA,TcMar-Tigger,-63,487,383,525587,526125 +6 - chr16 547207 547264 chr16,547207,547264,+,GA-rich,Low_complexity,Low_complexity,1,57,0,547207,547264 -6 + chr16 654611 654749 chr16,654378,654749,-,AluY,SINE,Alu,-10,301,1,654368,654749 +5 - chr16 679010 679045 chr16,679010,679045,+,MamRTE1,LINE,RTE-BovB,1458,1492,-2320,677553,681365 +6 + chr16 679010 679045 chr16,679010,679045,+,MamRTE1,LINE,RTE-BovB,1458,1492,-2320,677553,681365 -6 + chr16 690599 690908 chr16,690599,690908,-,AluSx1,SINE,Alu,-12,300,1,690587,690908 -6 - chr16 691283 691473 chr16,691283,691473,+,L2a,LINE,L2,3136,3376,-50,688148,691523 +6 + chr16 691495 691800 chr16,691495,691800,-,AluSp,SINE,Alu,-14,299,1,691481,691800 -6 - chr16 691809 692091 chr16,691809,692091,-,AluSx1,SINE,Alu,-24,288,1,691785,692091 -6 - chr16 708285 708631 chr16,708285,708631,+,L2b,LINE,L2,3023,3373,-2,705263,708633 +6 + chr16 711262 711277 chr16,711262,711334,-,L3b,LINE,CR1,-199,5033,4947,711063,716280 +1 - chr16 769163 769269 chr16,769163,769269,+,(GCCCCA)n,Simple_repeat,Simple_repeat,1,106,0,769163,769269 -6 + chr16 848540 848913 chr16,848540,848913,-,L1MB5,LINE,L1,-1,6173,5797,848539,854709 +6 - chr16 883875 884161 chr16,883875,884262,-,L1MD,LINE,L1,-3492,2654,2234,880383,886495 -4 - chr16 884943 885090 chr16,884862,886073,+,L1MEc,LINE,L1,1790,3033,-3286,883073,889359 +5 + chr16 900498 900681 chr16,900498,900681,-,AluSx1,SINE,Alu,-1,311,128,900497,900808 +6 - chr16 900681 900732 chr16,900681,900732,+,(TG)n,Simple_repeat,Simple_repeat,1,51,0,900681,900732 -6 + chr16 900732 900855 chr16,900732,900855,-,AluSx1,SINE,Alu,-189,123,1,900543,900855 +6 - chr16 979025 979146 chr16,978934,979146,+,L2a,LINE,L2,3109,3416,-10,975826,979156 -4 + chr16 980344 980392 chr16,980344,980392,+,(GCGGT)n,Simple_repeat,Simple_repeat,1,50,0,980344,980392 -6 + chr16 981003 981066 chr16,981003,981066,+,(CCCCGC)n,Simple_repeat,Simple_repeat,1,63,0,981003,981066 -6 + chr16 981066 981084 chr16,981066,981084,+,(GCCCTC)n,Simple_repeat,Simple_repeat,2,83,0,981065,981084 -6 + chr16 981282 981303 chr16,981282,981303,+,(TG)n,Simple_repeat,Simple_repeat,1,21,0,981282,981303 -1 + chr16 981303 981348 chr16,981303,981348,+,(GA)n,Simple_repeat,Simple_repeat,1,45,0,981303,981348 -6 + chr16 981348 981391 chr16,981348,981391,+,(TG)n,Simple_repeat,Simple_repeat,2,44,0,981347,981391 -6 + chr16 981580 981596 chr16,981580,981632,+,(CGCGG)n,Simple_repeat,Simple_repeat,1,52,0,981580,981632 -1 + chr16 1064450 1064730 chr16,1064450,1064730,+,AluJr,SINE,Alu,2,287,-25,1064449,1064755 -6 + chr16 1064812 1065197 chr16,1064812,1065197,-,MLT1C,LTR,ERVL-MaLR,-47,420,6,1064765,1065202 +6 - chr16 1066919 1067098 chr16,1066736,1067098,+,MSTA,LTR,ERVL-MaLR,1,392,-36,1066736,1067134 -4 + chr16 1067098 1067236 chr16,1067098,1067434,-,AluSg,SINE,Alu,-1,309,1,1067097,1067434 +1 - chr16 1077624 1077712 chr16,1077431,1077724,-,AluJb,SINE,Alu,-20,292,1,1077411,1077724 +5 - chr16 1077736 1077827 chr16,1077736,1077827,-,L1ME3Cz,LINE,L1,-9,988,897,1077727,1078723 +6 - chr16 1111627 1111698 chr16,1111400,1111698,-,AluSg7,SINE,Alu,-13,296,1,1111387,1111698 -1 - chr16 1112055 1112140 chr16,1112055,1112140,+,L3,LINE,CR1,3948,4039,-60,1108108,1112200 +6 + chr16 1112581 1112699 chr16,1112581,1112699,+,MLT1A,LTR,ERVL-MaLR,2,127,-247,1112580,1112946 +6 + chr16 1112703 1112816 chr16,1112703,1112816,+,MLT1A,LTR,ERVL-MaLR,249,374,0,1112455,1112816 +6 + chr16 1148255 1148369 chr16,1148255,1148369,-,MIR,SINE,MIR,-121,141,29,1148134,1148397 +6 - chr16 1157960 1157974 chr16,1157960,1158021,+,(TGCCCT)n,Simple_repeat,Simple_repeat,1,68,0,1157960,1158021 -1 + chr16 1206647 1206677 chr16,1206647,1206677,+,(GGCA)n,Simple_repeat,Simple_repeat,1,31,0,1206647,1206677 -6 + chr16 1223745 1223853 chr16,1223745,1223853,+,L1MC4,LINE,L1,6702,6823,-1219,1217044,1225072 +6 + chr16 1223928 1224096 chr16,1223928,1224096,+,L1MB5,LINE,L1,6005,6166,-8,1217924,1224104 +6 + chr16 1305548 1305850 chr16,1305548,1305850,-,AluSz,SINE,Alu,-10,302,1,1305538,1305850 +6 - chr16 1305860 1305917 chr16,1305860,1305917,-,L1M3,LINE,L1,-1151,4989,4933,1304709,1310849 +6 - chr16 1306877 1307181 chr16,1306877,1307181,+,AluSz,SINE,Alu,2,305,-7,1306876,1307188 -6 + chr16 1308923 1309008 chr16,1308923,1309008,+,(CGCCCC)n,Simple_repeat,Simple_repeat,1,88,0,1308923,1309008 -6 + chr16 1318727 1319021 chr16,1318727,1319021,+,AluSx1,SINE,Alu,1,303,-9,1318727,1319030 -6 + chr16 1321484 1321776 chr16,1321484,1321776,+,AluSx3,SINE,Alu,1,294,-17,1321484,1321793 -6 + chr16 1322378 1322560 chr16,1322253,1322560,-,AluSx1,SINE,Alu,-2,310,3,1322251,1322562 +4 - chr16 1322573 1322707 chr16,1322573,1322707,+,AluJo,SINE,Alu,1,133,-179,1322573,1322886 -6 + chr16 1322710 1322845 chr16,1322710,1323002,+,AluJb,SINE,Alu,2,298,-14,1322709,1323016 -1 + chr16 1358900 1358975 chr16,1358860,1359135,-,AluSg,SINE,Alu,-11,299,21,1358849,1359155 +5 - chr16 1361047 1361229 chr16,1360951,1361229,-,AluJb,SINE,Alu,-31,281,12,1360920,1361240 +4 - chr16 1361250 1361362 chr16,1361250,1361362,-,L1M4c,LINE,L1,-5495,889,781,1355755,1362142 +6 - chr16 1361362 1361405 chr16,1361362,1361657,+,AluYm1,SINE,Alu,1,295,-16,1361362,1361673 -1 + chr16 1437266 1437406 chr16,1437266,1437406,+,L1MB7,LINE,L1,5898,6050,-134,1431369,1437540 +6 + chr16 1438772 1438810 chr16,1438772,1438810,+,(CCCG)n,Simple_repeat,Simple_repeat,1,40,0,1438772,1438810 +6 + chr16 1438968 1439017 chr16,1438968,1439017,+,(GCAGG)n,Simple_repeat,Simple_repeat,1,52,0,1438968,1439017 +6 + chr16 1446226 1446265 chr16,1446226,1446265,+,G-rich,Low_complexity,Low_complexity,1,40,0,1446226,1446265 +6 + chr16 1452267 1452352 chr16,1452215,1452352,-,L1MB5,LINE,L1,-168,6006,5856,1452047,1458207 -2 - chr16 1467802 1467824 chr16,1467802,1468117,+,AluJo,SINE,Alu,1,312,0,1467802,1468117 -2 + chr16 1512984 1513078 chr16,1512984,1513078,+,L3,LINE,CR1,2730,2824,-1275,1510255,1514353 +6 + chr16 1513207 1513252 chr16,1513207,1513523,+,AluSc8,SINE,Alu,1,307,-4,1513207,1513527 +4 + chr16 1514268 1514369 chr16,1514086,1514369,+,AluY,SINE,Alu,1,281,-30,1514086,1514399 +2 + chr16 1514369 1514396 chr16,1514369,1514396,+,(AAAT)n,Simple_repeat,Simple_repeat,1,27,0,1514369,1514396 +6 + chr16 1514396 1514675 chr16,1514396,1515416,+,L1M4a1,LINE,L1,372,1792,-787,1514025,1516203 +5 + chr16 1576716 1577552 chr16,1576609,1577552,+,Tigger2b_Pri,DNA,TcMar-Tigger,80,1063,-5,1576530,1577557 -5 + chr16 1577601 1577865 chr16,1577601,1577865,+,AluSq,SINE,Alu,31,293,-20,1577571,1577885 -6 + chr16 1579242 1579377 chr16,1579016,1579377,-,Tigger2a,DNA,TcMar-Tigger,-64,370,1,1578952,1579377 +5 - chr16 1579378 1579519 chr16,1579378,1579598,+,MLT1C,LTR,ERVL-MaLR,253,467,0,1579126,1579598 -2 + chr16 1580527 1580585 chr16,1580284,1580664,+,MSTA,LTR,ERVL-MaLR,1,426,-2,1580284,1580666 +1 + chr16 1580284 1580308 chr16,1580284,1580664,+,MSTA,LTR,ERVL-MaLR,1,426,-2,1580284,1580666 -1 + chr16 1688355 1688388 chr16,1688317,1688388,-,MIRc,SINE,MIR,-174,94,24,1688143,1688411 -1 - chr16 1688591 1688720 chr16,1688591,1688720,+,FLAM_C,SINE,Alu,1,129,-14,1688591,1688734 +6 + chr16 1689011 1689143 chr16,1689011,1689143,+,L1ME3B,LINE,L1,6077,6229,-13,1682935,1689156 +6 + chr16 1689348 1689460 chr16,1689348,1689460,-,MIR,SINE,MIR,-9,253,144,1689339,1689603 -6 - chr16 1689460 1689739 chr16,1689460,1689739,-,AluJr,SINE,Alu,-8,304,3,1689452,1689741 -6 - chr16 1689739 1689890 chr16,1689739,1689890,-,MIR,SINE,MIR,-119,143,2,1689620,1689891 -6 - chr16 1689931 1690017 chr16,1689931,1690017,+,Charlie4z,DNA,hAT-Charlie,14,109,-58,1689918,1690075 +6 + chr16 1690334 1690523 chr16,1690334,1690523,+,LTR24,LTR,ERV1,233,424,-43,1690102,1690566 +6 + chr16 1707641 1707774 chr16,1707641,1707774,+,MIR3,SINE,MIR,40,205,-3,1707602,1707777 +6 + chr16 1714002 1714129 chr16,1713797,1714129,-,L1ME1,LINE,L1,-11,6168,5842,1713786,1719970 +4 - chr16 1751566 1751995 chr16,1751566,1751995,-,L1MB8,LINE,L1,-3,6175,5706,1751563,1757700 +6 - chr16 1841020 1841130 chr16,1841003,1841317,-,AluSq2,SINE,Alu,0,313,1,1841003,1841317 +5 - chr16 1843439 1843547 chr16,1843416,1843717,+,AluSz,SINE,Alu,1,302,-10,1843416,1843727 -1 + chr16 1965348 1965388 chr16,1965348,1965388,+,(CTGACCC)n,Simple_repeat,Simple_repeat,1,41,0,1965348,1965388 +6 + chr16 1986813 1986853 chr16,1986813,1987085,-,L2,LINE,L2,-411,3008,2712,1986402,1989796 +1 - chr16 2094992 2095017 chr16,2094992,2095077,+,AluJb,SINE,Alu,1,85,-227,2094992,2095304 +5 + chr16 2094992 2095077 chr16,2094992,2095077,+,AluJb,SINE,Alu,1,85,-227,2094992,2095304 -5 + chr16 2095343 2095433 chr16,2095127,2095435,+,AluSg7,SINE,Alu,1,306,-3,2095127,2095438 +5 + chr16 2095127 2095214 chr16,2095127,2095435,+,AluSg7,SINE,Alu,1,306,-3,2095127,2095438 -5 + chr16 2113104 2113154 chr16,2113104,2113154,+,(CCCGC)n,Simple_repeat,Simple_repeat,1,50,0,2113104,2113154 +6 + chr16 2119931 2120224 chr16,2119931,2120224,+,AluJo,SINE,Alu,1,295,-17,2119931,2120241 +6 + chr16 2240487 2240510 chr16,2240207,2240510,-,AluSx,SINE,Alu,-8,304,1,2240199,2240510 -1 - chr16 2240514 2240672 chr16,2240514,2240672,-,AluJr,SINE,Alu,-5,307,150,2240509,2240821 -6 - chr16 2240687 2240993 chr16,2240687,2240993,-,AluSx1,SINE,Alu,-3,309,2,2240684,2240994 -6 - chr16 2241043 2241090 chr16,2241043,2241182,+,AluYk2,SINE,Alu,171,311,0,2240873,2241182 +4 + chr16 2241635 2241692 chr16,2241595,2241692,+,MER58B,DNA,hAT-Charlie,77,176,-165,2241519,2241857 +2 + chr16 2241692 2241818 chr16,2241692,2241857,-,AluSz,SINE,Alu,-13,299,135,2241679,2241991 -5 - chr16 2272987 2273262 chr16,2272963,2273262,-,AluY,SINE,Alu,-10,301,1,2272953,2273262 -5 - chr16 2273286 2273418 chr16,2273286,2273465,+,MLT1J,LTR,ERVL-MaLR,300,502,-10,2272987,2273475 +5 + chr16 2452581 2452977 chr16,2452559,2453131,-,L1MB7,LINE,L1,-43,6141,5542,2452516,2458672 +1 - chr16 2458810 2458840 chr16,2458744,2458840,+,MIRb,SINE,MIR,88,197,-71,2458657,2458911 -4 + chr16 2459713 2459744 chr16,2459644,2459744,+,L2,LINE,L2,2441,2546,-873,2457204,2460617 -4 + chr16 2464963 2465129 chr16,2464963,2465129,-,AluSx1,SINE,Alu,-9,303,135,2464954,2465263 +6 - chr16 2465129 2465160 chr16,2465129,2465160,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,2465129,2465160 -6 + chr16 2465160 2465279 chr16,2465160,2465279,-,AluSx1,SINE,Alu,-192,120,2,2464968,2465280 +6 - chr16 2465424 2465705 chr16,2465424,2465705,+,AluJr,SINE,Alu,1,284,-28,2465424,2465733 -6 + chr16 2466263 2466399 chr16,2466263,2466399,+,AluSx,SINE,Alu,1,136,-176,2466263,2466575 -6 + chr16 2466401 2466692 chr16,2466401,2466692,+,AluSc8,SINE,Alu,1,291,-20,2466401,2466712 -6 + chr16 2476572 2476710 chr16,2476572,2476710,+,L2b,LINE,L2,3215,3374,-1,2473358,2476711 +6 + chr16 2477278 2477295 chr16,2477278,2477295,-,L2c,LINE,L2,0,3375,3359,2477278,2480653 -6 - chr16 2477295 2477585 chr16,2477295,2477585,+,AluJo,SINE,Alu,6,303,-9,2477290,2477594 +6 + chr16 2477585 2478079 chr16,2477585,2478079,-,L2c,LINE,L2,-3,3384,2817,2477582,2480895 -6 - chr16 2478169 2478324 chr16,2478169,2478324,+,FRAM,SINE,Alu,1,165,-11,2478169,2478335 +6 + chr16 2478729 2478878 chr16,2478729,2478878,-,AluJb,SINE,Alu,-9,303,156,2478720,2479033 -6 - chr16 2478878 2479191 chr16,2478878,2479191,-,AluJb,SINE,Alu,-7,305,1,2478871,2479191 -6 - chr16 2479819 2480129 chr16,2479819,2480129,-,AluSq,SINE,Alu,0,313,1,2479819,2480129 -6 - chr16 2480134 2480428 chr16,2480134,2480428,-,AluJb,SINE,Alu,-16,296,1,2480118,2480428 -6 - chr16 2481261 2481392 chr16,2481261,2481392,+,AluJr,SINE,Alu,1,131,-181,2481261,2481573 +6 + chr16 2481454 2481495 chr16,2481454,2481495,-,L2b,LINE,L2,-10,3365,3325,2481444,2484819 -6 - chr16 2517713 2517754 chr16,2517713,2517754,+,(TG)n,Simple_repeat,Simple_repeat,1,41,0,2517713,2517754 +6 + chr16 2517769 2517999 chr16,2517769,2518065,-,AluSx,SINE,Alu,-15,297,1,2517754,2518065 -5 - chr16 2554975 2554991 chr16,2554696,2554991,+,L2a,LINE,L2,3100,3410,-16,2551597,2555007 +1 + chr16 2554696 2554991 chr16,2554696,2554991,+,L2a,LINE,L2,3100,3410,-16,2551597,2555007 -1 + chr16 2555265 2555439 chr16,2555265,2555549,+,AluJb,SINE,Alu,2,296,-16,2555264,2555565 +4 + chr16 2555265 2555549 chr16,2555265,2555549,+,AluJb,SINE,Alu,2,296,-16,2555264,2555565 -6 + chr16 2555553 2555670 chr16,2555553,2555670,+,AluSz6,SINE,Alu,3,120,-192,2555551,2555862 -6 + chr16 2556070 2556105 chr16,2556070,2556344,-,AluJb,SINE,Alu,0,312,43,2556070,2556386 -5 - chr16 2562904 2562939 chr16,2562904,2562939,+,(GGCAGG)n,Simple_repeat,Simple_repeat,1,35,0,2562904,2562939 -6 + chr16 2564570 2564871 chr16,2564570,2564871,+,AluSc,SINE,Alu,1,301,-8,2564570,2564879 -6 + chr16 2569059 2569114 chr16,2569059,2569114,-,L1PA17,LINE,L1,-9,6157,6103,2569050,2575216 +6 - chr16 2569220 2569474 chr16,2569220,2569519,+,AluJb,SINE,Alu,5,300,-12,2569216,2569531 -2 + chr16 2571570 2571654 chr16,2571517,2571654,+,AluSx1,SINE,Alu,1,136,-176,2571517,2571830 -5 + chr16 2571654 2571816 chr16,2571654,2571969,+,AluSp,SINE,Alu,1,313,0,2571654,2571969 -1 + chr16 2571910 2571936 chr16,2571654,2571969,+,AluSp,SINE,Alu,1,313,0,2571654,2571969 -1 + chr16 2572314 2572353 chr16,2572173,2572451,+,AluSz,SINE,Alu,1,291,-21,2572173,2572472 -1 + chr16 2576181 2576367 chr16,2576181,2576367,-,L1M5,LINE,L1,-802,5557,5352,2575379,2581718 +6 - chr16 2576466 2576766 chr16,2576466,2576766,-,AluJr,SINE,Alu,-9,303,3,2576457,2576768 +6 - chr16 2578943 2579074 chr16,2578943,2579074,-,FLAM_C,SINE,Alu,-17,126,1,2578926,2579074 -6 - chr16 2579114 2579275 chr16,2579114,2579275,+,MER20,DNA,hAT-Charlie,1,166,-53,2579114,2579328 +6 + chr16 2579277 2579301 chr16,2579277,2579301,+,(G)n,Simple_repeat,Simple_repeat,1,24,0,2579277,2579301 +6 + chr16 2579429 2579631 chr16,2579429,2579631,+,L1ME4b,LINE,L1,642,871,-21,2578788,2579652 +6 + chr16 2579648 2579669 chr16,2579648,2579669,-,L1ME4a,LINE,L1,-32,6092,6072,2579616,2585740 -6 - chr16 2579669 2579962 chr16,2579669,2579962,+,AluSz6,SINE,Alu,1,312,0,2579669,2579962 +6 + chr16 2592514 2592688 chr16,2592476,2592688,+,AluSx1,SINE,Alu,86,296,-16,2592391,2592704 +1 + chr16 2594262 2594563 chr16,2594262,2594573,+,AluSc8,SINE,Alu,1,305,-6,2594262,2594579 +5 + chr16 2620222 2620515 chr16,2620222,2620515,-,AluSz6,SINE,Alu,0,312,1,2620222,2620515 +5 - chr16 2620515 2620536 chr16,2620515,2620536,+,L1ME4a,LINE,L1,6072,6092,-32,2614444,2620568 -6 + chr16 2620553 2620755 chr16,2620553,2620755,-,L1ME4b,LINE,L1,-21,871,642,2620532,2621396 +6 - chr16 2620883 2620911 chr16,2620883,2620911,+,(C)n,Simple_repeat,Simple_repeat,1,28,0,2620883,2620911 -6 + chr16 2620913 2621074 chr16,2620913,2621074,-,MER20,DNA,hAT-Charlie,-53,166,1,2620860,2621074 +6 - chr16 2621114 2621245 chr16,2621114,2621245,+,FLAM_C,SINE,Alu,1,126,-17,2621114,2621262 -6 + chr16 2644084 2644118 chr16,2643844,2644118,+,AluJb,SINE,Alu,43,312,0,2643802,2644118 -5 + chr16 2644750 2644923 chr16,2644639,2644923,-,AluJb,SINE,Alu,-16,296,2,2644623,2644924 +4 - chr16 2645200 2645214 chr16,2645200,2645492,-,L2a,LINE,L2,-19,3407,3100,2645181,2648591 +1 - chr16 2660349 2661287 chr16,2660261,2661287,-,LTR13,LTR,ERVK,0,1007,1,2660261,2661287 +5 - chr16 2661287 2665350 chr16,2661287,2668373,-,HERVK13-int,LTR,ERVK,0,8116,963,2661287,2669335 +5 - chr16 2667975 2668040 chr16,2661287,2668373,-,HERVK13-int,LTR,ERVK,0,8116,963,2661287,2669335 +5 - chr16 2669411 2669524 chr16,2668787,2669524,-,HERVK13-int,LTR,ERVK,-7380,736,1,2661407,2669524 +4 - chr16 2669524 2670537 chr16,2669524,2670537,-,LTR13,LTR,ERVK,0,1007,1,2669524,2670537 +6 - chr16 2671178 2671321 chr16,2671178,2671321,+,MIRb,SINE,MIR,72,257,-11,2671107,2671332 -6 + chr16 2672109 2672204 chr16,2672109,2672204,+,Charlie4z,DNA,hAT-Charlie,21,116,-51,2672089,2672255 -6 + chr16 2672205 2672403 chr16,2672205,2672403,+,AluSx,SINE,Alu,108,308,-4,2672098,2672407 -5 + chr16 2684363 2684487 chr16,2684363,2684487,+,AluSx4,SINE,Alu,1,133,-177,2684363,2684664 +6 + chr16 2684487 2684764 chr16,2684487,2684791,+,AluYk4,SINE,Alu,5,308,-3,2684483,2684794 +5 + chr16 2738734 2738840 chr16,2738734,2738840,+,MIR3,SINE,MIR,12,132,-76,2738723,2738916 -6 + chr16 2744458 2744755 chr16,2744458,2744755,+,AluSz,SINE,Alu,1,297,-15,2744458,2744770 -6 + chr16 2749953 2750390 chr16,2749953,2750390,-,MLT1C,LTR,ERVL-MaLR,-2,465,1,2749951,2750390 +6 - chr16 2750393 2750437 chr16,2750393,2750437,+,L1M,LINE,L1,5293,5335,-965,2745101,2751402 -6 + chr16 2750437 2750734 chr16,2750437,2750734,+,AluSz6,SINE,Alu,1,305,-7,2750437,2750741 -6 + chr16 2750734 2750810 chr16,2750734,2750826,+,L1M,LINE,L1,5336,5428,-872,2745399,2751698 -1 + chr16 2778201 2778304 chr16,2778201,2778304,+,MIRc,SINE,MIR,61,171,-97,2778141,2778401 +6 + chr16 2778601 2778886 chr16,2778601,2778886,+,AluSz,SINE,Alu,1,285,-27,2778601,2778913 +6 + chr16 2779883 2780168 chr16,2779883,2780168,-,AluSx3,SINE,Alu,-16,295,2,2779867,2780169 -6 - chr16 2780280 2780399 chr16,2780280,2780399,+,MER21A,LTR,ERVL,149,270,-661,2780132,2781060 +6 + chr16 2780447 2780568 chr16,2780447,2780868,+,MER21A,LTR,ERVL,459,892,-39,2779989,2780907 +5 + chr16 2859588 2859668 chr16,2859537,2859668,-,MIRb,SINE,MIR,-62,206,57,2859475,2859724 -2 - chr16 2866348 2866728 chr16,2866338,2866728,+,MER110A,LTR,ERV1,50,468,0,2866289,2866728 -5 + chr16 2939889 2939980 chr16,2939889,2940064,-,Charlie24,DNA,hAT-Charlie,-560,1890,1713,2939329,2941776 +2 - chr16 2943327 2943484 chr16,2943000,2943487,+,MER68,LTR,ERVL,92,557,-6,2942909,2943493 -3 + chr16 2954192 2954276 chr16,2954136,2954414,-,MLT1E,LTR,ERVL-MaLR,-14,666,379,2954122,2954792 +1 - chr16 2981186 2981478 chr16,2981186,2981478,-,AluSz,SINE,Alu,-21,291,1,2981165,2981478 +6 - chr16 2981555 2981591 chr16,2981555,2981689,+,MIRc,SINE,MIR,55,172,-36,2981501,2981725 -1 + chr16 2989241 2989299 chr16,2989241,2989299,+,(CCCTCTA)n,Simple_repeat,Simple_repeat,1,58,0,2989241,2989299 +6 + chr16 2990498 2990548 chr16,2990498,2990548,+,(CCTGCCT)n,Simple_repeat,Simple_repeat,1,49,0,2990498,2990548 +6 + chr16 2992525 2992594 chr16,2992525,2992594,-,L2b,LINE,L2,-1,3374,3305,2992524,2995898 -6 - chr16 2992696 2992739 chr16,2992696,2992739,+,(GGCAGAG)n,Simple_repeat,Simple_repeat,1,43,0,2992696,2992739 +6 + chr16 2993360 2993671 chr16,2993360,2993671,+,AluJb,SINE,Alu,1,287,-25,2993360,2993696 +5 + chr16 2993677 2993984 chr16,2993677,2993984,+,AluY,SINE,Alu,1,308,-3,2993677,2993987 +6 + chr16 2994225 2994509 chr16,2994225,2994527,+,AluSq2,SINE,Alu,1,301,-12,2994225,2994539 +5 + chr16 3001778 3001900 chr16,3001778,3001900,-,L2b,LINE,L2,0,3387,3265,3001778,3005164 -6 - chr16 3003431 3003603 chr16,3003321,3003603,+,AluSx1,SINE,Alu,1,289,-23,3003321,3003626 -5 + chr16 3003603 3003797 chr16,3003603,3003820,+,AluJb,SINE,Alu,137,310,-2,3003467,3003822 -2 + chr16 3006396 3006531 chr16,3006396,3006531,-,AluY,SINE,Alu,-176,135,1,3006220,3006531 -6 - chr16 3006534 3006942 chr16,3006534,3006942,-,MLT1D,LTR,ERVL-MaLR,-18,487,34,3006516,3006975 -6 - chr16 3032481 3032551 chr16,3032436,3033022,-,L2b,LINE,L2,-17,3358,2746,3032419,3035767 -1 - chr16 3032671 3032742 chr16,3032436,3033022,-,L2b,LINE,L2,-17,3358,2746,3032419,3035767 -1 - chr16 3034898 3034994 chr16,3034713,3035008,-,AluJo,SINE,Alu,-20,292,2,3034693,3035009 -3 - chr16 3036789 3036826 chr16,3036789,3036826,+,(CCCCCG)n,Simple_repeat,Simple_repeat,1,38,0,3036789,3036826 +6 + chr16 3037279 3037395 chr16,3037261,3037552,-,AluJb,SINE,Alu,-14,298,1,3037247,3037552 -3 - chr16 3037630 3037706 chr16,3037586,3037877,-,AluSx3,SINE,Alu,-15,296,2,3037571,3037878 -3 - chr16 3037835 3037877 chr16,3037586,3037877,-,AluSx3,SINE,Alu,-15,296,2,3037571,3037878 -2 - chr16 3037877 3038012 chr16,3037877,3038052,-,MIR,SINE,MIR,-66,196,17,3037811,3038068 -4 - chr16 3038378 3038583 chr16,3038378,3038583,-,MER63A,DNA,hAT-Blackjack,0,210,1,3038378,3038583 -6 - chr16 3038983 3039120 chr16,3038983,3039120,-,L2c,LINE,L2,-16,3371,3244,3038967,3042363 -6 - chr16 3039120 3039133 chr16,3039120,3039299,+,MIR,SINE,MIR,1,175,-87,3039120,3039386 +5 + chr16 3051128 3051175 chr16,3051128,3051175,-,MLT2C1,LTR,ERVL,-2,561,516,3051126,3051690 +6 - chr16 3051175 3051238 chr16,3051175,3051238,+,(GT)n,Simple_repeat,Simple_repeat,1,64,0,3051175,3051238 -6 + chr16 3051239 3051592 chr16,3051239,3051592,-,MLT2C1,LTR,ERVL,-42,355,1,3051197,3051592 +6 - chr16 3051747 3051816 chr16,3051747,3051816,-,L2c,LINE,L2,-185,3202,3129,3051562,3054944 +6 - chr16 3051825 3051842 chr16,3051825,3051842,+,(AT)n,Simple_repeat,Simple_repeat,1,17,0,3051825,3051842 -6 + chr16 3051842 3052129 chr16,3051842,3052129,+,AluSq,SINE,Alu,1,286,-27,3051842,3052156 -5 + chr16 3052129 3052154 chr16,3052129,3052154,+,(AT)n,Simple_repeat,Simple_repeat,2,26,0,3052128,3052154 -6 + chr16 3052247 3052293 chr16,3052247,3052293,+,(CAGTGAGC)n,Simple_repeat,Simple_repeat,1,48,0,3052247,3052293 -6 + chr16 3052467 3052560 chr16,3052467,3052560,-,L2c,LINE,L2,-650,2769,2670,3051817,3055229 +6 - chr16 3052819 3053088 chr16,3052819,3053088,-,LTR16A1,LTR,ERVL,0,456,159,3052819,3053246 +6 - chr16 3053187 3053351 chr16,3053187,3053351,+,AluJb,SINE,Alu,137,300,-12,3053051,3053363 -6 + chr16 3053360 3053530 chr16,3053360,3053530,+,MIRb,SINE,MIR,50,229,-39,3053311,3053569 -6 + chr16 3056060 3056136 chr16,3056060,3056136,+,G-rich,Low_complexity,Low_complexity,1,76,0,3056060,3056136 -6 + chr16 3057703 3057992 chr16,3057703,3057992,-,AluJr,SINE,Alu,-17,295,11,3057686,3058002 +5 - chr16 3057997 3058065 chr16,3057997,3058065,-,MER81,DNA,hAT-Blackjack,-46,68,1,3057951,3058065 +6 - chr16 3076911 3077348 chr16,3076838,3077348,-,MER9a2,LTR,ERVK,0,513,1,3076838,3077348 +5 - chr16 3077352 3077443 chr16,3077352,3078786,-,HERVK9-int,LTR,ERVK,-3,6018,4582,3077349,3083367 +5 - chr16 3078231 3078690 chr16,3077352,3078786,-,HERVK9-int,LTR,ERVK,-3,6018,4582,3077349,3083367 +5 - chr16 3080964 3081056 chr16,3080480,3081056,-,HERVK9-int,LTR,ERVK,-5417,604,19,3075063,3081074 +4 - chr16 3081056 3081086 chr16,3081056,3081509,-,MER9a2,LTR,ERVK,-12,501,48,3081044,3081556 +2 - chr16 3087039 3087068 chr16,3087039,3087068,+,(CCTGT)n,Simple_repeat,Simple_repeat,1,29,0,3087039,3087068 -6 + chr16 3108249 3108312 chr16,3108004,3108312,-,AluSp,SINE,Alu,-4,309,1,3108000,3108312 -2 - chr16 3110546 3110588 chr16,3110546,3110588,-,MER102b,DNA,hAT-Charlie,-3,338,296,3110543,3110883 +6 - chr16 3110676 3110954 chr16,3110676,3110971,+,AluSp,SINE,Alu,1,297,-16,3110676,3110987 -2 + chr16 3114795 3114887 chr16,3114629,3115056,-,MLT1C,LTR,ERVL-MaLR,0,467,1,3114629,3115056 +3 - chr16 3114968 3115056 chr16,3114629,3115056,-,MLT1C,LTR,ERVL-MaLR,0,467,1,3114629,3115056 +4 - chr16 3125529 3125723 chr16,3125387,3125723,-,L2a,LINE,L2,-5,3421,3052,3125382,3128774 +5 - chr16 3128788 3128880 chr16,3128788,3128880,-,LTR41,LTR,ERVL,0,768,673,3128788,3129552 +5 - chr16 3128880 3129169 chr16,3128880,3129169,+,AluSx,SINE,Alu,1,304,-8,3128880,3129177 -6 + chr16 3129169 3129653 chr16,3129169,3129828,-,LTR41,LTR,ERVL,-96,672,2,3129073,3129829 +1 - chr16 3131405 3131454 chr16,3131196,3131454,+,AluY,SINE,Alu,43,300,-11,3131154,3131465 -5 + chr16 3131454 3131600 chr16,3131454,3131622,+,AluY,SINE,Alu,133,300,-11,3131322,3131633 -2 + chr16 3131734 3131810 chr16,3131734,3131810,+,LTR41C,LTR,ERVL,1,75,-626,3131734,3132436 -5 + chr16 3131836 3131956 chr16,3131836,3131956,+,LTR41C,LTR,ERVL,56,168,-533,3131781,3132489 -5 + chr16 3132016 3132103 chr16,3132016,3132121,+,MIRb,SINE,MIR,53,153,-115,3131964,3132236 -1 + chr16 3132323 3132349 chr16,3132300,3132594,+,AluSx1,SINE,Alu,1,294,-18,3132300,3132612 -1 + chr16 3132850 3133078 chr16,3132831,3133078,+,AluSz,SINE,Alu,5,249,-63,3132827,3133141 -4 + chr16 3133079 3133097 chr16,3133079,3133097,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,3133079,3133097 -6 + chr16 3156736 3156948 chr16,3156636,3156948,-,AluY,SINE,Alu,0,311,1,3156636,3156948 +5 - chr16 3156950 3157195 chr16,3156950,3157195,-,AluJb,SINE,Alu,-10,302,61,3156940,3157255 +6 - chr16 3157404 3157477 chr16,3157404,3157477,-,tRNA-Lys-AAG,tRNA,tRNA,-3,73,1,3157401,3157477 +6 - chr16 3181233 3181445 chr16,3181124,3181539,-,L1MEd,LINE,L1,-6091,995,557,3175033,3182095 +5 - chr16 3273609 3273648 chr16,3273370,3273648,+,L1ME3G,LINE,L1,355,658,-266,3273016,3273914 +1 + chr16 3273770 3274063 chr16,3273770,3274063,-,AluSx1,SINE,Alu,-16,296,3,3273754,3274065 -6 - chr16 3274135 3274310 chr16,3274135,3274310,-,MLT1G,LTR,ERVL-MaLR,0,591,411,3274135,3274720 -6 - chr16 3274465 3274963 chr16,3274465,3274963,-,MER51A,LTR,ERV1,0,634,1,3274465,3274963 -6 - chr16 3275077 3275354 chr16,3275077,3275354,-,MLT1G,LTR,ERVL-MaLR,-262,293,7,3274815,3275360 -6 - chr16 3275562 3275713 chr16,3275562,3275713,+,FLAM_C,SINE,Alu,6,220,-82,3275557,3275795 +6 + chr16 3293081 3293403 chr16,3293081,3293439,+,THE1D,LTR,ERVL-MaLR,1,369,-12,3293081,3293451 +5 + chr16 3307573 3307829 chr16,3307513,3307829,-,AluJr4,SINE,Alu,-11,301,1,3307502,3307829 +5 - chr16 3534047 3534258 chr16,3534047,3535439,-,L2a,LINE,L2,-1,3425,1749,3534046,3537187 +1 - chr16 3543871 3544179 chr16,3543871,3544179,+,AluSx,SINE,Alu,1,303,-9,3543871,3544188 +6 + chr16 3544665 3544993 chr16,3544665,3544993,-,AluJb,SINE,Alu,-6,306,1,3544659,3544993 -6 - chr16 3545134 3545163 chr16,3545134,3545163,-,L2b,LINE,L2,0,3375,3349,3545134,3548511 -6 - chr16 3545163 3545513 chr16,3545163,3545523,+,AluSx1,SINE,Alu,1,306,-6,3545163,3545529 +5 + chr16 3545606 3545785 chr16,3545523,3546118,-,L2b,LINE,L2,-27,3348,2586,3545496,3548703 -5 - chr16 3650636 3650737 chr16,3650627,3650737,-,MER119,DNA,hAT-Charlie,-73,510,396,3650554,3651132 +5 - chr16 3650749 3651054 chr16,3650749,3651054,-,MER119,DNA,hAT-Charlie,-227,356,1,3650522,3651054 +6 - chr16 3687060 3687380 chr16,3687060,3687432,+,THE1B,LTR,ERVL-MaLR,1,364,0,3687060,3687432 +5 + chr16 3931217 3931296 chr16,3930982,3931296,+,AluSq2,SINE,Alu,1,313,0,3930982,3931296 -5 + chr16 3931296 3931466 chr16,3931296,3931466,+,L1MEg,LINE,L1,3473,3632,-2687,3927824,3934153 -6 + chr16 3931466 3931721 chr16,3931466,3931752,+,AluSq2,SINE,Alu,1,294,-19,3931466,3931771 -2 + chr16 3947609 3947747 chr16,3947414,3947747,-,AluJo,SINE,Alu,-23,289,1,3947391,3947747 +5 - chr16 3947774 3948074 chr16,3947774,3948074,-,AluSz,SINE,Alu,-9,303,5,3947765,3948078 +6 - chr16 3948091 3948162 chr16,3948091,3948162,-,L1MB7,LINE,L1,-16,6168,6091,3948075,3954252 +6 - chr16 3948273 3948687 chr16,3948273,3948687,-,L1ME4b,LINE,L1,-133,759,277,3948140,3948963 +6 - chr16 3948719 3948829 chr16,3948719,3949152,+,L1ME3,LINE,L1,5689,6160,-2,3943031,3949154 -2 + chr16 3950272 3950289 chr16,3950253,3950289,+,(CTTC)n,Simple_repeat,Simple_repeat,1,36,0,3950253,3950289 -4 + chr16 4032014 4032107 chr16,4032014,4032320,+,AluSg,SINE,Alu,3,310,0,4032012,4032320 +4 + chr16 4032789 4032810 chr16,4032511,4032810,-,AluSq2,SINE,Alu,-15,298,1,4032496,4032810 -2 - chr16 4180117 4180147 chr16,4180036,4180147,+,MIRb,SINE,MIR,127,267,-1,4179910,4180148 -5 + chr16 4180174 4180311 chr16,4180174,4180381,+,LTR33,LTR,ERVL,4,215,-300,4180171,4180681 -2 + chr16 4245825 4245914 chr16,4245645,4245914,-,AluJo,SINE,Alu,-5,307,14,4245640,4245927 +5 - chr16 4246029 4246266 chr16,4246029,4246266,+,L3,LINE,CR1,3748,3994,-105,4242282,4246371 -6 + chr16 4248252 4248428 chr16,4248236,4248432,-,AluSx3,SINE,Alu,-30,281,83,4248206,4248514 +3 - chr16 4251322 4251362 chr16,4251164,4251362,+,L1ME2,LINE,L1,5755,5948,-216,4245410,4251578 -4 + chr16 4251362 4251415 chr16,4251362,4251415,+,AluSx3,SINE,Alu,83,135,-176,4251280,4251591 -6 + chr16 4251415 4251713 chr16,4251415,4251713,+,AluSq,SINE,Alu,1,302,-11,4251415,4251724 -1 + chr16 4251713 4251864 chr16,4251713,4251864,+,AluSx3,SINE,Alu,136,283,-28,4251578,4251892 -6 + chr16 4251903 4251918 chr16,4251903,4251918,+,L1MC,LINE,L1,5414,5424,-2361,4246490,4254279 -6 + chr16 4251918 4252034 chr16,4251918,4252058,+,FLAM_C,SINE,Alu,1,133,-10,4251918,4252068 -2 + chr16 4324667 4324710 chr16,4324651,4324710,-,L2a,LINE,L2,-4,3422,3363,4324647,4328072 +5 - chr16 4324749 4324775 chr16,4324749,4324900,-,MIRb,SINE,MIR,-61,207,50,4324688,4324949 +2 - chr16 4325270 4325354 chr16,4325248,4325391,+,MIR,SINE,MIR,22,169,-93,4325227,4325484 -3 + chr16 4335870 4336007 chr16,4335731,4336007,-,MER33,DNA,hAT-Charlie,-27,297,28,4335704,4336034 +5 - chr16 4336153 4336446 chr16,4336153,4336446,-,AluSx1,SINE,Alu,-17,295,1,4336136,4336446 +6 - chr16 4337040 4337110 chr16,4337040,4337110,+,(CCCTGGC)n,Simple_repeat,Simple_repeat,1,73,0,4337040,4337110 -6 + chr16 4346694 4346712 chr16,4346690,4346712,-,AluJb,SINE,Alu,-2,310,292,4346688,4347003 +5 - chr16 4346712 4347018 chr16,4346712,4347018,-,AluSx,SINE,Alu,-5,307,1,4346707,4347018 +6 - chr16 4347018 4347151 chr16,4347018,4347151,-,AluJb,SINE,Alu,-21,291,160,4346997,4347310 +6 - chr16 4347284 4347439 chr16,4347284,4347439,-,AluJb,SINE,Alu,-155,157,1,4347129,4347439 +6 - chr16 4347441 4347520 chr16,4347441,4347520,+,MIRb,SINE,MIR,125,203,-65,4347317,4347585 -6 + chr16 4348417 4348636 chr16,4348417,4348636,+,L2b,LINE,L2,2935,3162,-213,4345483,4348849 -6 + chr16 4426905 4427217 chr16,4426905,4427217,-,AluSx,SINE,Alu,0,312,2,4426905,4427218 -6 - chr16 4430522 4430582 chr16,4430285,4430582,+,AluSq,SINE,Alu,1,302,-11,4430285,4430593 +1 + chr16 4430761 4431061 chr16,4430761,4431061,+,AluSz,SINE,Alu,1,300,-12,4430761,4431073 +6 + chr16 4532234 4532485 chr16,4532234,4532485,-,L2a,LINE,L2,-5,3421,3130,4532229,4535614 +6 - chr16 4533058 4533128 chr16,4533058,4533128,-,L2b,LINE,L2,-73,3314,3247,4532985,4536374 +6 - chr16 4560011 4560186 chr16,4560011,4560186,-,AluSz6,SINE,Alu,-6,306,132,4560005,4560317 +6 - chr16 4560186 4560499 chr16,4560186,4560499,-,AluSg7,SINE,Alu,0,309,1,4560186,4560499 +6 - chr16 4560548 4560665 chr16,4560548,4560665,+,L1M4,LINE,L1,2176,2267,-3879,4558373,4564544 -6 + chr16 4560665 4560872 chr16,4560665,4560872,+,AluSq2,SINE,Alu,1,133,-180,4560665,4561052 -6 + chr16 4560872 4561156 chr16,4560872,4561156,+,AluSp,SINE,Alu,2,295,-18,4560871,4561174 -6 + chr16 4561156 4561329 chr16,4561156,4561329,+,AluSq2,SINE,Alu,134,305,-8,4561023,4561337 -6 + chr16 4561329 4561415 chr16,4561329,4561415,+,L1M4,LINE,L1,2268,2385,-3761,4559062,4565176 -6 + chr16 4735082 4735183 chr16,4735082,4735183,+,L2c,LINE,L2,2978,3084,-303,4732105,4735486 -6 + chr16 4746145 4746195 chr16,4745994,4746195,-,MER3,DNA,hAT-Charlie,0,209,1,4745994,4746195 +4 - chr16 4795573 4795606 chr16,4795573,4795606,+,G-rich,Low_complexity,Low_complexity,1,33,0,4795573,4795606 -6 + chr16 4796435 4796532 chr16,4796435,4796733,+,AluY,SINE,Alu,1,298,-13,4796435,4796746 -1 + chr16 4839259 4839392 chr16,4839259,4839392,-,AluJb,SINE,Alu,-178,134,1,4839081,4839392 +6 - chr16 4840012 4840142 chr16,4840012,4840142,-,X7C_LINE,LINE,CR1,-7,229,99,4840005,4840240 +6 - chr16 4840223 4840334 chr16,4840223,4840422,-,X6A_LINE,LINE,CR1,-359,721,523,4839864,4840944 +1 - chr16 5098949 5098985 chr16,5098949,5099153,-,L2c,LINE,L2,-3,3423,3206,5098946,5102358 -4 - chr16 5215394 5215444 chr16,5215329,5215550,+,MIR,SINE,MIR,13,251,-17,5215317,5215567 -5 + chr16 5220551 5220577 chr16,5220551,5220577,+,(AAAC)n,Simple_repeat,Simple_repeat,1,26,0,5220551,5220577 -6 + chr16 5599634 5599854 chr16,5599634,5599854,+,MER113,DNA,hAT-Charlie,291,505,-16,5599344,5599870 +6 + chr16 5599884 5600007 chr16,5599884,5600007,+,AluJo,SINE,Alu,1,127,-185,5599884,5600192 +6 + chr16 5600007 5600151 chr16,5600007,5600326,+,AluY,SINE,Alu,1,309,-2,5600007,5600328 +5 + chr16 5601169 5601596 chr16,5601093,5601596,-,MLT1F,LTR,ERVL-MaLR,0,548,1,5601093,5601596 +5 - chr16 5610300 5610470 chr16,5610284,5610470,-,MIR,SINE,MIR,-19,243,38,5610265,5610507 +5 - chr16 5610544 5610674 chr16,5610544,5610897,+,AluJr,SINE,Alu,1,310,-2,5610544,5610899 -2 + chr16 6037210 6037584 chr16,6036894,6037584,-,Charlie20a,DNA,hAT-Charlie,0,807,122,6036894,6037705 -1 - chr16 6037584 6037894 chr16,6037584,6037894,-,AluSx1,SINE,Alu,-2,310,1,6037582,6037894 -6 - chr16 6037894 6037976 chr16,6037894,6037976,-,Charlie20a,DNA,hAT-Charlie,-686,121,45,6037208,6038020 -6 - chr16 6038169 6038481 chr16,6038169,6038481,-,AluSz,SINE,Alu,-4,308,1,6038165,6038481 -6 - chr16 6038531 6038608 chr16,6038531,6038608,+,(AT)n,Simple_repeat,Simple_repeat,1,78,0,6038531,6038608 +6 + chr16 6090074 6090137 chr16,6089876,6090392,-,MLT1D,LTR,ERVL-MaLR,0,505,1,6089876,6090392 -3 - chr16 6092543 6092918 chr16,6092543,6092918,-,L1PREC2,LINE,L1,-1148,4998,4624,6091395,6097541 -6 - chr16 6092922 6092954 chr16,6092922,6093078,+,L1PA15,LINE,L1,6002,6158,-7,6086921,6093085 +5 + chr16 6576936 6577202 chr16,6576936,6577202,+,MLT1J1,LTR,ERVL-MaLR,54,331,-113,6576883,6577315 +6 + chr16 6704076 6704280 chr16,6704076,6704280,-,MIR,SINE,MIR,-29,233,31,6704047,6704310 -6 - chr16 6704628 6704659 chr16,6704628,6704659,+,(GA)n,Simple_repeat,Simple_repeat,1,31,0,6704628,6704659 +6 + chr16 6705278 6705558 chr16,6705278,6705695,+,L1MC3,LINE,L1,6456,6884,-901,6698823,6706596 +5 + chr16 7614337 7614365 chr16,7614337,7614365,+,(CTCCT)n,Simple_repeat,Simple_repeat,1,28,0,7614337,7614365 -6 + chr16 7888741 7888790 chr16,7888741,7889156,-,L2c,LINE,L2,-4,3383,2979,7888737,7892134 +2 - chr16 8276992 8277066 chr16,8276728,8277066,-,MER1B,DNA,hAT-Charlie,0,339,1,8276728,8277066 +4 - chr16 8298499 8298539 chr16,8298499,8298539,-,MIR,SINE,MIR,-118,144,110,8298381,8298648 -6 - chr16 8298558 8298827 chr16,8298558,8298827,-,L2b,LINE,L2,-162,3225,2970,8298396,8301796 -6 - chr16 8298903 8299167 chr16,8298903,8299167,-,L2c,LINE,L2,-1,3386,3089,8298902,8302255 -6 - chr16 8299347 8299772 chr16,8299347,8299813,+,MLT1L,LTR,ERVL-MaLR,121,594,-16,8299227,8299829 +5 + chr16 8313630 8313753 chr16,8313594,8313771,+,L2c,LINE,L2,3003,3192,-195,8310592,8313966 +3 + chr16 8369864 8369988 chr16,8369721,8370007,-,L2b,LINE,L2,-56,3370,3073,8369665,8373079 -1 - chr16 8371304 8371365 chr16,8371284,8371825,-,L4_A_Mam,LINE,RTE-X,0,4990,4400,8371284,8376224 -3 - chr16 8526603 8526678 chr16,8526603,8526770,+,MSTA,LTR,ERVL-MaLR,254,428,0,8526350,8526770 -2 + chr16 8666773 8667094 chr16,8666773,8667094,-,AluSq2,SINE,Alu,0,313,2,8666773,8667095 -6 - chr16 8667255 8667271 chr16,8667255,8667283,+,(TTTA)n,Simple_repeat,Simple_repeat,1,28,0,8667255,8667283 +5 + chr16 8849321 8849355 chr16,8849321,8849355,+,(TGTTTCC)n,Simple_repeat,Simple_repeat,1,36,0,8849321,8849355 +6 + chr16 8850933 8851050 chr16,8850877,8851193,-,AluSq2,SINE,Alu,0,313,1,8850877,8851193 -3 - chr16 8859813 8859987 chr16,8859695,8859987,+,AluSx1,SINE,Alu,1,293,-19,8859695,8860006 +1 + chr16 8869613 8869709 chr16,8869581,8869709,-,MIRb,SINE,MIR,-61,169,29,8869520,8869737 -2 - chr16 8869877 8870032 chr16,8869877,8870048,+,L1MB7,LINE,L1,5521,5688,-496,8864357,8870544 +5 + chr16 8966753 8966856 chr16,8966732,8966856,+,L2b,LINE,L2,3237,3375,0,8963496,8966856 +2 + chr16 9068554 9068620 chr16,9068535,9068620,+,MLT1J1,LTR,ERVL-MaLR,269,367,-145,9068267,9068765 +1 + chr16 9070853 9070983 chr16,9070824,9071140,-,AluSx,SINE,Alu,-5,307,1,9070819,9071140 -3 - chr16 9071891 9072012 chr16,9071854,9072012,-,AluSz,SINE,Alu,-17,295,136,9071837,9072147 -2 - chr16 9072012 9072317 chr16,9072012,9072317,-,AluSz6,SINE,Alu,-7,305,1,9072005,9072317 -6 - chr16 9072317 9072412 chr16,9072317,9072451,-,AluSz,SINE,Alu,-177,135,1,9072140,9072451 -5 - chr16 9105318 9105378 chr16,9105318,9105378,+,LFSINE_Vert,SINE,tRNA,267,325,-134,9105052,9105512 +6 + chr16 9106020 9106103 chr16,9106020,9106103,-,L2c,LINE,L2,-53,3334,3257,9105967,9109359 -6 - chr16 9106126 9106262 chr16,9106126,9106262,+,AluSz,SINE,Alu,1,136,-176,9106126,9106438 +6 + chr16 9106511 9106579 chr16,9106292,9106579,-,AluSx1,SINE,Alu,-13,299,7,9106279,9106585 +4 - chr16 9106292 9106579 chr16,9106292,9106579,-,AluSx1,SINE,Alu,-13,299,7,9106279,9106585 -6 - chr16 9106959 9107174 chr16,9106959,9107205,+,L2,LINE,L2,2234,2482,-937,9104726,9108142 -1 + chr16 9106959 9107205 chr16,9106959,9107205,+,L2,LINE,L2,2234,2482,-937,9104726,9108142 +1 + chr16 9108124 9108310 chr16,9108124,9108310,-,MIRb,SINE,MIR,-5,263,25,9108119,9108334 -6 - chr16 9108350 9108485 chr16,9108350,9108485,-,AluJo,SINE,Alu,-176,136,1,9108174,9108485 -6 - chr16 9108771 9108857 chr16,9108771,9108857,+,MIRb,SINE,MIR,92,197,-71,9108680,9108928 +6 + chr16 9109467 9109573 chr16,9109467,9109573,+,MIR3,SINE,MIR,34,142,-66,9109434,9109639 +6 + chr16 9110158 9110175 chr16,9110158,9110175,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,9110158,9110175 +6 + chr16 9110767 9111055 chr16,9110767,9111055,+,AluSp,SINE,Alu,13,300,-13,9110755,9111068 +6 + chr16 9111155 9111231 chr16,9111155,9111231,+,L2a,LINE,L2,3343,3419,-7,9107813,9111238 +6 + chr16 9111744 9111980 chr16,9111744,9111980,-,L1ME4a,LINE,L1,-46,6078,5828,9111698,9117807 -6 - chr16 9113005 9113045 chr16,9113005,9113045,+,(TTTTGTTTT)n,Simple_repeat,Simple_repeat,1,41,0,9113005,9113045 +6 + chr16 9355588 9355780 chr16,9355492,9355859,+,THE1C,LTR,ERVL-MaLR,1,375,0,9355492,9355859 +1 + chr16 9401730 9401783 chr16,9401709,9401812,+,LTR16E2,LTR,ERVL,151,253,-315,9401559,9402127 +3 + chr16 9403043 9403168 chr16,9403026,9403168,-,MIRc,SINE,MIR,-116,152,2,9402910,9403169 -2 - chr16 9403509 9403657 chr16,9403509,9403657,+,MER5A1,DNA,hAT-Charlie,9,161,-5,9403501,9403662 +6 + chr16 9404346 9404461 chr16,9404346,9404461,+,L2a,LINE,L2,3301,3404,-22,9401046,9404483 +6 + chr16 9404462 9404761 chr16,9404462,9404761,+,AluSx1,SINE,Alu,1,299,-13,9404462,9404774 +6 + chr16 9404908 9405201 chr16,9404908,9405201,+,(AC)n,Simple_repeat,Simple_repeat,1,294,0,9404908,9405201 +6 + chr16 9405226 9405607 chr16,9405226,9405607,+,L1MA5,LINE,L1,5912,6300,0,9399315,9405607 +6 + chr16 9405624 9405664 chr16,9405624,9405664,+,(CACATG)n,Simple_repeat,Simple_repeat,1,42,0,9405624,9405664 +6 + chr16 9405686 9405741 chr16,9405686,9405741,-,MER4-int,LTR,ERV1,-5433,1165,1111,9400253,9406851 -6 - chr16 9405744 9406152 chr16,9405744,9406152,+,(CATGCA)n,Simple_repeat,Simple_repeat,1,435,0,9405744,9406152 +6 + chr16 9406656 9406681 chr16,9406656,9406681,+,(TAA)n,Simple_repeat,Simple_repeat,1,26,0,9406656,9406681 +6 + chr16 9406715 9406912 chr16,9406715,9406912,+,MIRc,SINE,MIR,16,230,-38,9406700,9406950 +6 + chr16 9406994 9407134 chr16,9406994,9407134,-,MLT1J2,LTR,ERVL-MaLR,-18,531,341,9406976,9407474 -6 - chr16 9407278 9407371 chr16,9407278,9407371,-,MLT1J2,LTR,ERVL-MaLR,-388,161,72,9406890,9407442 -6 - chr16 9407475 9407613 chr16,9407475,9407613,+,MIRb,SINE,MIR,48,189,-79,9407428,9407692 +6 + chr16 9407690 9407868 chr16,9407690,9407868,+,L1MB7,LINE,L1,5929,6113,-246,9401762,9408114 +6 + chr16 9407870 9408093 chr16,9407870,9408254,+,L2a,LINE,L2,3056,3424,-2,9404815,9408256 +5 + chr16 9442504 9442589 chr16,9441993,9442589,+,LTR48B,LTR,ERV1,1,644,0,9441993,9442589 -4 + chr16 9446010 9446022 chr16,9445775,9446022,+,MIRb,SINE,MIR,26,268,0,9445750,9446022 -5 + chr16 9447909 9448042 chr16,9447877,9448373,-,L2b,LINE,L2,-1,3374,2829,9447876,9451201 +3 - chr16 9449771 9449824 chr16,9449771,9449950,-,MIR1_Amn,SINE,MIR,-71,197,19,9449700,9449968 +2 - chr16 9466655 9466788 chr16,9466587,9466788,+,MIRb,SINE,MIR,41,265,-3,9466547,9466791 +1 + chr16 9676674 9676819 chr16,9671560,9676819,-,HERVH-int,LTR,ERV1,-2564,5149,1,9668996,9676819 +4 - chr16 9676821 9676843 chr16,9676821,9677301,-,LTR7,LTR,ERV1,-2,448,1,9676819,9677301 +1 - chr16 9754148 9754187 chr16,9754148,9754187,+,A-rich,Low_complexity,Low_complexity,1,39,0,9754148,9754187 -6 + chr16 9756601 9756675 chr16,9756601,9756675,+,MIRb,SINE,MIR,120,193,-75,9756482,9756750 -6 + chr16 9757512 9757569 chr16,9757512,9757569,+,L2c,LINE,L2,3281,3336,-51,9754232,9757620 -6 + chr16 9757871 9757899 chr16,9757871,9757899,+,A-rich,Low_complexity,Low_complexity,1,28,0,9757871,9757899 -6 + chr16 9758020 9758038 chr16,9758020,9758107,+,MIR3,SINE,MIR,49,135,-73,9757972,9758180 -1 + chr16 10351440 10351745 chr16,10351392,10351745,-,AluJb,SINE,Alu,0,312,1,10351392,10351745 +5 - chr16 10351745 10352125 chr16,10351745,10352125,-,MER67C,LTR,ERV1,-165,546,195,10351580,10352319 +6 - chr16 10352348 10352622 chr16,10352348,10352622,-,L1MB3,LINE,L1,-8,6175,5906,10352340,10358527 +6 - chr16 10352633 10352752 chr16,10352633,10352928,-,AluSx1,SINE,Alu,-14,298,1,10352619,10352928 +1 - chr16 10445309 10445502 chr16,10443659,10445502,-,HERVIP10B3-int,LTR,ERV1,0,6284,4354,10443659,10449855 +5 - chr16 10445502 10445806 chr16,10445502,10445806,-,AluSp,SINE,Alu,-11,302,1,10445491,10445806 +6 - chr16 10445806 10446439 chr16,10445806,10446439,-,HERVIP10B3-int,LTR,ERV1,-3250,4353,3751,10442556,10450189 +6 - chr16 10446456 10447438 chr16,10446456,10447438,-,HERVI-int,LTR,ERV1,-6781,1004,2,10439675,10447439 +6 - chr16 10447438 10447680 chr16,10447438,10447680,-,LTR10B2,LTR,ERV1,0,503,268,10447438,10447947 +6 - chr16 10447870 10449747 chr16,10447870,10451776,-,L1P2,LINE,L1,-1092,5369,1534,10446778,10453309 +1 - chr16 10528156 10528202 chr16,10528156,10528284,+,AluJr,SINE,Alu,2,125,-187,10528155,10528471 -1 + chr16 10529648 10529699 chr16,10529648,10529961,+,AluSp,SINE,Alu,1,313,0,10529648,10529961 +4 + chr16 10691273 10691327 chr16,10691057,10691327,+,AluJb,SINE,Alu,1,285,-27,10691057,10691354 +1 + chr16 10691327 10691399 chr16,10691327,10691591,-,L2a,LINE,L2,-145,3281,2965,10691182,10694555 -4 - chr16 10692832 10692973 chr16,10692832,10693019,+,MLT1J,LTR,ERVL-MaLR,313,508,-4,10692520,10693023 +5 + chr16 10864914 10864990 chr16,10864745,10864990,-,L1MEf,LINE,L1,-5816,320,69,10858929,10865058 +5 - chr16 10934203 10934457 chr16,10934203,10934457,-,MER113,DNA,hAT-Charlie,-47,474,186,10934156,10934642 -5 - chr16 10934258 10934457 chr16,10934203,10934457,-,MER113,DNA,hAT-Charlie,-47,474,186,10934156,10934642 +5 - chr16 10934545 10934675 chr16,10934545,10934675,+,MIRc,SINE,MIR,42,182,-86,10934504,10934761 +6 + chr16 10934545 10934675 chr16,10934545,10934675,+,MIRc,SINE,MIR,42,182,-86,10934504,10934761 -6 + chr16 10935048 10935202 chr16,10935048,10935202,-,MIRb,SINE,MIR,-62,206,32,10934986,10935233 -6 - chr16 10935210 10935450 chr16,10935210,10935450,+,MER113,DNA,hAT-Charlie,50,292,-229,10935161,10935679 +6 + chr16 10935548 10935988 chr16,10935548,10935988,+,L1MC4,LINE,L1,7303,7713,-329,10928246,10936317 +6 + chr16 10935988 10936245 chr16,10935988,10936245,-,AluJo,SINE,Alu,-10,302,43,10935978,10936287 -6 - chr16 10936245 10936280 chr16,10936245,10936600,+,L1MC4,LINE,L1,7714,8039,-3,10928532,10936603 +5 + chr16 10939031 10939092 chr16,10939031,10939092,+,L2b,LINE,L2,3314,3375,0,10935718,10939092 -6 + chr16 10939157 10939681 chr16,10939157,10939681,+,L2b,LINE,L2,2615,3201,-225,10936543,10939906 -6 + chr16 10939703 10939791 chr16,10939703,10939791,-,L2a,LINE,L2,-26,3400,3288,10939677,10943078 +6 - chr16 10939967 10939989 chr16,10939967,10939989,+,(GGCA)n,Simple_repeat,Simple_repeat,1,22,0,10939967,10939989 -6 + chr16 11056865 11057034 chr16,11056865,11057192,-,L1ME4c,LINE,L1,-191,639,291,11056674,11057482 -5 - chr16 11070524 11070668 chr16,11070505,11070802,+,L2a,LINE,L2,2701,3061,-358,11067805,11071160 -3 + chr16 11196177 11196307 chr16,11196018,11196540,+,MLT1F1,LTR,ERVL-MaLR,3,569,0,11196016,11196540 +1 + chr16 11196619 11196673 chr16,11196546,11196709,-,MIR,SINE,MIR,-38,224,54,11196508,11196762 -3 - chr16 11224101 11224193 chr16,11224050,11224193,-,MIRb,SINE,MIR,-79,189,45,11223971,11224237 -2 - chr16 11224721 11224759 chr16,11224721,11224759,+,(TCCC)n,Simple_repeat,Simple_repeat,1,38,0,11224721,11224759 +6 + chr16 11224767 11224886 chr16,11224767,11224886,-,L2a,LINE,L2,-5,3421,3310,11224762,11228195 -6 - chr16 11224886 11224916 chr16,11224886,11224916,+,(GT)n,Simple_repeat,Simple_repeat,1,30,0,11224886,11224916 +6 + chr16 11224916 11224948 chr16,11224916,11224948,-,L2a,LINE,L2,-117,3309,3282,11224799,11228229 -6 - chr16 11224940 11224969 chr16,11224940,11225157,-,MIR,SINE,MIR,-1,261,14,11224939,11225170 -5 - chr16 11341851 11342058 chr16,11341851,11342058,+,MER20,DNA,hAT-Charlie,1,215,-4,11341851,11342062 -6 + chr16 11342114 11342257 chr16,11342114,11342257,-,L2c,LINE,L2,-223,3164,3029,11341891,11345285 +6 - chr16 11342305 11342423 chr16,11342305,11342440,+,MIRb,SINE,MIR,17,156,-112,11342289,11342552 -2 + chr16 11344351 11344492 chr16,11344307,11344492,+,L1ME4a,LINE,L1,5714,5914,-210,11338594,11344702 -5 + chr16 11344495 11344770 chr16,11344495,11344785,+,AluJb,SINE,Alu,1,290,-22,11344495,11344807 -2 + chr16 11348143 11348301 chr16,11348069,11348301,+,MER58B,DNA,hAT-Charlie,77,341,0,11347993,11348301 -5 + chr16 11348569 11348717 chr16,11348569,11348717,-,L2b,LINE,L2,-126,3249,3095,11348443,11351811 +6 - chr16 11348726 11348807 chr16,11348726,11348807,-,MER81,DNA,hAT-Blackjack,-6,108,25,11348720,11348831 +6 - chr16 11348849 11348901 chr16,11348849,11348901,-,L2b,LINE,L2,-330,3057,3003,11348519,11351903 +6 - chr16 11465260 11465388 chr16,11465166,11465388,-,AluSz,SINE,Alu,-52,260,39,11465114,11465426 -1 - chr16 11465398 11465532 chr16,11465398,11465542,-,Charlie4z,DNA,hAT-Charlie,-14,153,4,11465384,11465545 -4 - chr16 11470615 11470723 chr16,11470586,11471206,-,L2a,LINE,L2,-10,3365,2726,11470576,11473931 -3 - chr16 11471278 11471521 chr16,11471203,11471521,-,L2b,LINE,L2,-32,3343,3029,11471171,11474549 -2 - chr16 11471979 11472182 chr16,11471979,11472182,-,MER20,DNA,hAT-Charlie,0,219,1,11471979,11472182 -6 - chr16 11472188 11472492 chr16,11472188,11472492,-,AluSx,SINE,Alu,-8,304,1,11472180,11472492 -6 - chr16 11472533 11472647 chr16,11472533,11472647,+,MIR,SINE,MIR,21,133,-129,11472513,11472776 +6 + chr16 11472675 11472799 chr16,11472675,11472799,+,MIR,SINE,MIR,109,236,-26,11472567,11472825 +6 + chr16 11472846 11473116 chr16,11472846,11473116,+,AluSx1,SINE,Alu,2,283,-29,11472845,11473145 +6 + chr16 11473116 11473148 chr16,11473116,11473148,+,(AAAT)n,Simple_repeat,Simple_repeat,1,32,0,11473116,11473148 +6 + chr16 11741910 11742041 chr16,11741751,11742041,+,AluSx,SINE,Alu,1,292,-20,11741751,11742061 +1 + chr16 11742652 11742720 chr16,11742652,11742720,+,(GCC)n,Simple_repeat,Simple_repeat,1,68,0,11742652,11742720 +6 + chr16 11743273 11743574 chr16,11743273,11743574,+,AluSx1,SINE,Alu,1,295,-17,11743273,11743591 +6 + chr16 11743692 11743779 chr16,11743692,11743779,+,MIR1_Amn,SINE,MIR,67,151,-79,11743626,11743858 +6 + chr16 11743854 11743895 chr16,11743854,11743895,-,L1M4b,LINE,L1,-135,3304,3266,11743719,11747160 -6 - chr16 11743895 11744198 chr16,11743895,11744198,-,AluJo,SINE,Alu,-4,308,5,11743891,11744202 -6 - chr16 11744198 11744316 chr16,11744198,11744316,-,L1M4b,LINE,L1,-174,3265,3165,11744024,11747480 -6 - chr16 11744291 11744466 chr16,11744291,11744466,-,L1M4b,LINE,L1,-4056,2811,2602,11740235,11747067 -6 - chr16 11797679 11797737 chr16,11797679,11797737,-,MIRb,SINE,MIR,-80,188,118,11797599,11797854 -6 - chr16 11797969 11798275 chr16,11797969,11798400,-,L2a,LINE,L2,-183,3192,2708,11797786,11801107 -5 - chr16 11821634 11821755 chr16,11821605,11821788,+,AluJo,SINE,Alu,127,302,-10,11821479,11821798 -3 + chr16 11828648 11828680 chr16,11828648,11828680,+,(ATAACA)n,Simple_repeat,Simple_repeat,1,34,0,11828648,11828680 -6 + chr16 11881075 11881187 chr16,11880899,11881187,-,AluSx3,SINE,Alu,-13,298,11,11880886,11881197 +5 - chr16 11881429 11881642 chr16,11881429,11881642,-,L1MB5,LINE,L1,0,6180,5961,11881429,11887602 +6 - chr16 11881655 11881949 chr16,11881655,11881949,-,AluJo,SINE,Alu,-13,299,2,11881642,11881950 +6 - chr16 11882000 11882251 chr16,11882000,11882251,+,AluSg,SINE,Alu,1,284,-26,11882000,11882277 -6 + chr16 11908208 11908263 chr16,11907959,11908263,+,AluSz,SINE,Alu,1,305,-7,11907959,11908270 +1 + chr16 11908341 11908478 chr16,11908341,11908478,+,AluSz,SINE,Alu,2,136,-176,11908340,11908654 +6 + chr16 11908805 11908916 chr16,11908789,11908962,+,AluSz,SINE,Alu,137,295,-17,11908653,11908979 +5 + chr16 12087112 12087447 chr16,12087112,12087447,+,AluSx1,SINE,Alu,1,311,-1,12087112,12087448 -6 + chr16 12087447 12087595 chr16,12087447,12087595,+,AluJo,SINE,Alu,134,282,-30,12087314,12087625 -6 + chr16 12087680 12087781 chr16,12087680,12087781,-,MIRb,SINE,MIR,-82,186,85,12087598,12087865 +6 - chr16 12089831 12089870 chr16,12089831,12089870,+,(TCCC)n,Simple_repeat,Simple_repeat,1,41,0,12089831,12089870 -6 + chr16 12090062 12090261 chr16,12090062,12090261,+,MIRb,SINE,MIR,8,215,-47,12090055,12090308 -6 + chr16 12093627 12093724 chr16,12093614,12093724,+,MIRb,SINE,MIR,85,198,-70,12093530,12093794 -5 + chr16 12093750 12093891 chr16,12093750,12093914,+,Charlie4z,DNA,hAT-Charlie,17,165,-2,12093734,12093916 -2 + chr16 12367163 12367286 chr16,12367163,12367286,+,L2c,LINE,L2,3207,3362,-25,12363957,12367311 -6 + chr16 12372912 12373028 chr16,12372912,12373082,-,MIR,SINE,MIR,-16,246,62,12372896,12373143 -4 - chr16 12373669 12373709 chr16,12373639,12373709,+,L2c,LINE,L2,3286,3387,0,12370354,12373709 +2 + chr16 12374686 12374844 chr16,12374686,12374844,+,MER5B,DNA,hAT-Charlie,6,177,-1,12374681,12374845 +6 + chr16 12374850 12374966 chr16,12374850,12374966,+,MER113,DNA,hAT-Charlie,275,412,-109,12374576,12375075 +6 + chr16 12374990 12375059 chr16,12374990,12375059,+,FLAM_A,SINE,Alu,56,125,-17,12374935,12375076 +6 + chr16 12375331 12375750 chr16,12375331,12375750,-,MLT1F2,LTR,ERVL-MaLR,-9,551,147,12375322,12375896 -6 - chr16 12375750 12376032 chr16,12375750,12376053,+,AluSz,SINE,Alu,1,303,-9,12375750,12376062 +5 + chr16 12546285 12546554 chr16,12546263,12546554,-,THE1B,LTR,ERVL-MaLR,0,364,56,12546263,12546609 -2 - chr16 12557418 12557661 chr16,12557418,12557661,-,AluSz,SINE,Alu,-69,243,1,12557349,12557661 +6 - chr16 12557669 12557694 chr16,12557669,12557852,-,Tigger3,DNA,TcMar-Tigger,-2827,202,3,12554842,12557854 +1 - chr16 12560756 12560893 chr16,12560692,12560893,+,MIR,SINE,MIR,25,234,-28,12560668,12560921 -5 + chr16 12610769 12610872 chr16,12610769,12610872,-,MIRb,SINE,MIR,-62,206,88,12610707,12610959 +6 - chr16 12614539 12614852 chr16,12614539,12614878,+,MER4A1,LTR,ERV1,166,472,0,12614374,12614878 +5 + chr16 12745873 12745978 chr16,12745862,12746092,+,L1MEc,LINE,L1,1406,1657,-4743,12744457,12750835 +1 + chr16 12753221 12753232 chr16,12753167,12753232,+,MLT1A,LTR,ERVL-MaLR,1,67,-307,12753167,12753539 +2 + chr16 12759336 12759415 chr16,12759336,12759477,-,MLT1N2,LTR,ERVL-MaLR,-298,264,119,12759038,12759595 -4 - chr16 12761135 12761162 chr16,12761135,12761333,+,AluSx1,SINE,Alu,142,312,0,12760994,12761333 +5 + chr16 13204805 13204884 chr16,13204657,13204884,-,MIRb,SINE,MIR,-5,263,19,13204652,13204902 +4 - chr16 13246316 13246390 chr16,13246112,13246474,+,THE1B,LTR,ERVL-MaLR,1,364,0,13246112,13246474 +1 + chr16 13258333 13258435 chr16,13258261,13258451,+,MIRb,SINE,MIR,45,245,-23,13258217,13258474 +3 + chr16 13331723 13331900 chr16,13331723,13331900,+,MIRb,SINE,MIR,51,236,-32,13331673,13331932 -6 + chr16 13350180 13350421 chr16,13349944,13350514,+,MLT2B3,LTR,ERVL,1,554,0,13349944,13350514 +3 + chr16 13562894 13562918 chr16,13562894,13562919,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,13562894,13562919 +5 + chr16 13730137 13730436 chr16,13728867,13730771,-,L1MA10,LINE,L1,-174,6160,4287,13728693,13735057 +5 - chr16 13778901 13779095 chr16,13778829,13779123,-,MLT1C,LTR,ERVL-MaLR,-2,465,177,13778827,13779299 +3 - chr16 13779698 13779760 chr16,13779489,13780125,+,LTR9,LTR,ERV1,1,612,0,13779489,13780125 -1 + chr16 13931150 13931222 chr16,13931150,13931222,-,Tigger16a,DNA,TcMar-Tigger,0,957,875,13931150,13932096 +6 - chr16 13931373 13931410 chr16,13931373,13931410,+,Charlie1b,DNA,hAT-Charlie,1,37,-486,13931373,13931896 -6 + chr16 13931407 13931553 chr16,13931407,13931553,-,Charlie1a,DNA,hAT-Charlie,-1131,324,165,13930276,13931717 +6 - chr16 13931846 13931997 chr16,13931846,13931997,-,Charlie1a,DNA,hAT-Charlie,-1304,151,1,13930542,13931997 +6 - chr16 13932402 13932478 chr16,13932402,13932478,+,(ATGT)n,Simple_repeat,Simple_repeat,1,79,0,13932402,13932478 -6 + chr16 13932633 13932762 chr16,13932633,13932762,+,AluJr4,SINE,Alu,5,130,-182,13932629,13932944 -6 + chr16 13932762 13933075 chr16,13932762,13933075,+,AluSx1,SINE,Alu,1,312,0,13932762,13933075 -6 + chr16 13933075 13933223 chr16,13933075,13933223,+,AluJr4,SINE,Alu,131,286,-26,13932945,13933249 -6 + chr16 13933426 13933719 chr16,13933426,13933719,+,AluSq2,SINE,Alu,1,295,-18,13933426,13933737 -6 + chr16 13934376 13934424 chr16,13934376,13934424,+,AluSx3,SINE,Alu,71,118,-193,13934306,13934617 -6 + chr16 13953155 13953413 chr16,13953114,13953413,-,AluSc8,SINE,Alu,-12,299,1,13953102,13953413 -1 - chr16 14009280 14009720 chr16,14009249,14009720,-,L1MB7,LINE,L1,-1736,4410,3943,14007513,14013662 +5 - chr16 14009781 14009797 chr16,14009781,14009881,-,LTR103b_Mam,LTR,ERV1?,-105,443,339,14009676,14010219 +2 - chr16 14018882 14018936 chr16,14018882,14018936,+,MER102c,DNA,hAT-Charlie,274,328,-3,14018609,14018939 -6 + chr16 14018980 14019463 chr16,14018980,14019463,-,ERVL-B4-int,LTR,ERVL,-735,4979,4498,14018245,14023960 +6 - chr16 14020348 14020487 chr16,14020348,14020671,-,L2a,LINE,L2,-1,3425,3031,14020347,14023701 +2 - chr16 14020933 14021061 chr16,14020901,14021061,-,MamTip2,DNA,hAT-Tip100,-64,241,79,14020837,14021139 +4 - chr16 14150833 14151479 chr16,14150337,14151479,-,Tigger2b_Pri,DNA,TcMar-Tigger,-2,1066,1,14150335,14151479 -1 - chr16 14152312 14152357 chr16,14152312,14152357,+,(AT)n,Simple_repeat,Simple_repeat,1,42,0,14152312,14152357 +6 + chr16 14153092 14153122 chr16,14153092,14153122,+,A-rich,Low_complexity,Low_complexity,1,31,0,14153092,14153122 +6 + chr16 14200045 14200216 chr16,14200001,14200216,+,L1ME4b,LINE,L1,5513,5728,-2154,14194489,14202370 -4 + chr16 14323294 14323383 chr16,14323091,14323406,+,L2a,LINE,L2,3056,3426,0,14320036,14323406 +1 + chr16 14363109 14363295 chr16,14362995,14363542,+,L1MD2,LINE,L1,5557,6141,-218,14357439,14363760 -5 + chr16 14369936 14370018 chr16,14369928,14370018,-,MIR,SINE,MIR,-12,250,160,14369916,14370177 +4 - chr16 14408039 14408069 chr16,14407786,14408069,+,MLT1K,LTR,ERVL-MaLR,252,564,-31,14407535,14408100 -5 + chr16 14410239 14410387 chr16,14410103,14410387,-,AluJb,SINE,Alu,-28,284,1,14410075,14410387 +4 - chr16 14418634 14418716 chr16,14418594,14418716,-,MIRb,SINE,MIR,-127,141,18,14418467,14418733 +4 - chr16 14695567 14695759 chr16,14695457,14695759,+,AluSq2,SINE,Alu,1,300,-13,14695457,14695772 -5 + chr16 14695759 14695782 chr16,14695759,14695782,+,AluSz6,SINE,Alu,275,293,-19,14695485,14695801 -6 + chr16 14695784 14695965 chr16,14695784,14696314,-,MER57-int,LTR,ERV1,-1382,6155,5552,14694402,14701865 +2 - chr16 14701774 14701855 chr16,14701610,14701891,+,AluJo,SINE,Alu,7,291,-21,14701604,14701912 -3 + chr16 14734685 14734877 chr16,14734575,14734877,+,AluSq2,SINE,Alu,1,300,-13,14734575,14734890 -5 + chr16 14734877 14734900 chr16,14734877,14734900,+,AluSz6,SINE,Alu,275,293,-19,14734603,14734919 -6 + chr16 14734902 14735083 chr16,14734902,14735432,-,MER57-int,LTR,ERV1,-1382,6155,5552,14733520,14740983 +2 - chr16 14740892 14740973 chr16,14740728,14741009,+,AluJo,SINE,Alu,7,291,-21,14740722,14741030 -3 + chr16 14902132 14902174 chr16,14902132,14902301,+,MER58A,DNA,hAT-Charlie,37,208,-16,14902096,14902317 +5 + chr16 14909887 14910042 chr16,14909847,14910042,-,MLT1J1,LTR,ERVL-MaLR,-21,423,235,14909826,14910276 +5 - chr16 14910074 14910372 chr16,14910074,14910372,-,AluSx1,SINE,Alu,-14,298,1,14910060,14910372 +6 - chr16 14910377 14910685 chr16,14910377,14910685,-,AluJb,SINE,Alu,0,312,2,14910377,14910686 +6 - chr16 14910686 14910784 chr16,14910686,14910784,+,MIR,SINE,MIR,94,198,-64,14910593,14910848 -6 + chr16 14910876 14910912 chr16,14910876,14910912,+,(TC)n,Simple_repeat,Simple_repeat,1,37,0,14910876,14910912 -6 + chr16 15015828 15015915 chr16,15015730,15015915,+,L1M5,LINE,L1,2446,2626,-3520,15013285,15019435 -5 + chr16 15016311 15016390 chr16,15016311,15016546,-,MLT1K,LTR,ERVL-MaLR,-16,594,353,15016295,15016898 +1 - chr16 15018118 15018419 chr16,15018118,15018419,+,AluJb,SINE,Alu,1,288,-24,15018118,15018443 -6 + chr16 15018601 15018778 chr16,15018601,15018778,+,MIRb,SINE,MIR,55,260,-8,15018547,15018786 -6 + chr16 15019473 15019811 chr16,15019473,15019811,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,15019473,15019811 +6 - chr16 15019830 15020139 chr16,15019830,15020139,+,AluY,SINE,Alu,1,309,-2,15019830,15020141 -6 + chr16 15020206 15020316 chr16,15020206,15020316,+,MIR,SINE,MIR,118,237,-25,15020089,15020341 -6 + chr16 15020408 15020488 chr16,15020408,15020699,+,AluY,SINE,Alu,1,298,-13,15020408,15020712 -1 + chr16 15108431 15108510 chr16,15108431,15108510,-,L2c,LINE,L2,-44,3343,3269,15108387,15111778 -6 - chr16 15108632 15109197 chr16,15108632,15109247,+,L1MEg,LINE,L1,46,686,-5398,15108587,15114645 +5 + chr16 15125899 15125948 chr16,15125899,15126034,+,MER3,DNA,hAT-Charlie,1,136,-73,15125899,15126107 -1 + chr16 15155335 15155371 chr16,15155335,15155371,+,GA-rich,Low_complexity,Low_complexity,1,37,0,15155335,15155371 +6 + chr16 15155463 15155561 chr16,15155463,15155561,-,MIR,SINE,MIR,-64,198,94,15155399,15155654 -6 - chr16 15155562 15155870 chr16,15155562,15155870,+,AluJb,SINE,Alu,2,312,0,15155561,15155870 +6 + chr16 15155875 15156171 chr16,15155875,15156171,+,AluSx1,SINE,Alu,1,296,-16,15155875,15156187 +6 + chr16 15156203 15156398 chr16,15156203,15156398,+,MLT1J1,LTR,ERVL-MaLR,235,423,-21,15155969,15156419 +6 + chr16 15156420 15156642 chr16,15156420,15156642,+,MIRc,SINE,MIR,1,253,-15,15156420,15156657 +6 + chr16 15156711 15157020 chr16,15156711,15157140,+,MER57A1,LTR,ERV1,1,432,0,15156711,15157140 +5 + chr16 15608620 15608739 chr16,15608620,15608779,+,L1MB2,LINE,L1,6012,6170,-1,15602609,15608780 +4 + chr16 15610300 15610318 chr16,15609888,15610318,-,Charlie22a,DNA,hAT-Charlie,-1,490,4,15609887,15610321 -2 - chr16 15610344 15610512 chr16,15610344,15610512,-,MER8,DNA,TcMar-Tigger,0,239,73,15610344,15610584 -6 - chr16 15683343 15683388 chr16,15683343,15683625,-,AluY,SINE,Alu,-12,299,21,15683331,15683645 -4 - chr16 15684167 15684246 chr16,15683949,15684246,+,AluSx1,SINE,Alu,2,298,-14,15683948,15684260 +2 + chr16 15684310 15684570 chr16,15684310,15684586,+,AluSq2,SINE,Alu,1,301,-12,15684310,15684598 +5 + chr16 15701237 15701252 chr16,15700953,15701252,+,AluSx,SINE,Alu,1,298,-14,15700953,15701266 +1 + chr16 15704846 15704978 chr16,15704846,15704978,-,FLAM_C,SINE,Alu,-16,127,1,15704830,15704978 -6 - chr16 15705011 15705281 chr16,15705011,15705281,-,AluSz6,SINE,Alu,-44,268,1,15704967,15705281 -6 - chr16 15705699 15705984 chr16,15705699,15706005,+,AluY,SINE,Alu,1,302,-9,15705699,15706014 +5 + chr16 15732761 15732993 chr16,15732761,15733017,+,MIRc,SINE,MIR,6,265,-3,15732756,15733020 +5 + chr16 15741151 15741205 chr16,15740701,15741205,+,MLT1F1,LTR,ERVL-MaLR,3,569,0,15740699,15741205 +1 + chr16 15741205 15741275 chr16,15741205,15741275,+,MIR,SINE,MIR,160,219,-43,15741046,15741318 +6 + chr16 15741285 15741424 chr16,15741285,15741424,+,MIRc,SINE,MIR,49,201,-67,15741237,15741491 +6 + chr16 15745605 15745886 chr16,15745574,15745886,-,AluSq,SINE,Alu,0,313,1,15745574,15745886 +5 - chr16 15745909 15746226 chr16,15745909,15746226,-,AluJo,SINE,Alu,-5,307,1,15745904,15746226 +6 - chr16 15746805 15747111 chr16,15746805,15747111,+,AluSz6,SINE,Alu,1,298,-14,15746805,15747125 -6 + chr16 15747111 15747157 chr16,15747111,15747157,+,(GGGA)n,Simple_repeat,Simple_repeat,1,46,0,15747111,15747157 -6 + chr16 15747161 15747392 chr16,15747161,15747392,-,MIRb,SINE,MIR,0,262,16,15747161,15747407 +6 - chr16 15747410 15747502 chr16,15747410,15747502,+,Kanga11a,DNA,TcMar-Tc2,878,964,-6,15746533,15747508 -6 + chr16 15790975 15791255 chr16,15790944,15791255,-,AluSx1,SINE,Alu,0,312,1,15790944,15791255 +5 - chr16 15791255 15791301 chr16,15791255,15791301,+,MER45A,DNA,hAT-Tip100,138,178,0,15791118,15791301 -6 + chr16 15791513 15791672 chr16,15791513,15791672,+,MIR,SINE,MIR,2,165,-97,15791512,15791769 -6 + chr16 15791672 15791973 chr16,15791672,15791973,-,AluJr,SINE,Alu,-11,301,1,15791661,15791973 +6 - chr16 15791973 15792064 chr16,15791973,15792064,+,MIR,SINE,MIR,166,262,0,15791808,15792064 -6 + chr16 15792066 15792346 chr16,15792066,15792346,-,AluJr,SINE,Alu,-19,293,5,15792047,15792350 +6 - chr16 15792469 15792674 chr16,15792469,15792674,-,MER58A,DNA,hAT-Charlie,-1,223,9,15792468,15792682 +6 - chr16 15885029 15885074 chr16,15885024,15885313,+,AluSc8,SINE,Alu,1,287,-24,15885024,15885337 +1 + chr16 15885669 15885686 chr16,15885392,15885686,-,AluSc5,SINE,Alu,-10,299,5,15885382,15885690 -2 - chr16 16290135 16290308 chr16,16289525,16290308,-,L1MC5,LINE,L1,-2168,7136,6611,16287357,16296918 +5 - chr16 16290308 16290469 chr16,16290308,16290469,-,MIRc,SINE,MIR,-64,204,39,16290244,16290507 +6 - chr16 16292129 16292139 chr16,16291835,16292139,-,AluSx,SINE,Alu,0,312,1,16291835,16292139 +4 - chr16 16292312 16292450 chr16,16292312,16292450,-,Charlie1a,DNA,hAT-Charlie,0,1455,1316,16292312,16293765 +6 - chr16 16292445 16292600 chr16,16292445,16292629,-,Charlie1,DNA,hAT-Charlie,-2553,228,42,16289892,16292670 +2 - chr16 16292952 16293172 chr16,16292761,16293172,-,MLT1J,LTR,ERVL-MaLR,-37,475,5,16292724,16293176 +4 - chr16 16293843 16294043 chr16,16293843,16294043,-,L3,LINE,CR1,-5,4094,3872,16293838,16297914 +6 - chr16 16308542 16308697 chr16,16308502,16308697,-,MLT1J1,LTR,ERVL-MaLR,-21,423,235,16308481,16308931 +5 - chr16 16308729 16309027 chr16,16308729,16309027,-,AluSx1,SINE,Alu,-14,298,1,16308715,16309027 +6 - chr16 16309032 16309340 chr16,16309032,16309340,-,AluJb,SINE,Alu,0,312,2,16309032,16309341 +6 - chr16 16309341 16309439 chr16,16309341,16309439,+,MIR,SINE,MIR,94,198,-64,16309248,16309503 -6 + chr16 16309531 16309567 chr16,16309531,16309567,+,(TC)n,Simple_repeat,Simple_repeat,1,37,0,16309531,16309567 -6 + chr16 16658227 16658249 chr16,16658020,16658249,-,AluJr,SINE,Alu,-87,225,1,16657933,16658249 -1 - chr16 16658273 16658338 chr16,16658273,16658551,-,L1MC3,LINE,L1,-597,7188,6875,16657676,16665425 -4 - chr16 16659505 16659597 chr16,16659335,16659618,-,AluJb,SINE,Alu,-27,285,2,16659308,16659619 -3 - chr16 16663667 16663846 chr16,16663462,16663846,+,THE1D,LTR,ERVL-MaLR,1,381,0,16663462,16663846 +2 + chr16 16663932 16663968 chr16,16663932,16663968,+,(TATGA)n,Simple_repeat,Simple_repeat,1,35,0,16663932,16663968 +6 + chr16 16663968 16664135 chr16,16663968,16664282,-,AluJb,SINE,Alu,-5,307,1,16663963,16664282 -5 - chr16 16761126 16761472 chr16,16761126,16761472,-,L1ME4b,LINE,L1,-218,674,331,16760908,16761802 -6 - chr16 17082295 17082628 chr16,17081985,17082628,-,MER41B,LTR,ERV1,-38,596,3,17081947,17082630 +5 - chr16 17082628 17082940 chr16,17082628,17082940,-,MER41B,LTR,ERV1,-241,393,112,17082387,17083051 +6 - chr16 17082965 17083078 chr16,17082965,17083078,+,L2a,LINE,L2,3307,3421,-5,17079659,17083083 -6 + chr16 17084137 17084290 chr16,17084137,17084290,+,MIR,SINE,MIR,56,206,-56,17084082,17084346 -6 + chr16 17084277 17084421 chr16,17084277,17084421,-,L2a,LINE,L2,-2,3424,3286,17084275,17087706 +6 - chr16 17084443 17084489 chr16,17084443,17084489,-,L2a,LINE,L2,-266,3160,3114,17084177,17087602 +6 - chr16 17084555 17084609 chr16,17084555,17084609,+,(TTTA)n,Simple_repeat,Simple_repeat,1,54,0,17084555,17084609 -6 + chr16 17084645 17084676 chr16,17084645,17084676,+,(CATT)n,Simple_repeat,Simple_repeat,1,31,0,17084645,17084676 -6 + chr16 17084766 17084952 chr16,17084766,17084952,-,MER20,DNA,hAT-Charlie,0,219,32,17084766,17084983 +6 - chr16 17138588 17138659 chr16,17138588,17138659,+,MSTB,LTR,ERVL-MaLR,134,206,-226,17138455,17138885 +6 + chr16 17138656 17138736 chr16,17138656,17138779,+,MSTB,LTR,ERVL-MaLR,289,426,0,17138368,17138779 +5 + chr16 17192863 17193112 chr16,17192808,17193112,-,AluSz,SINE,Alu,-8,304,1,17192800,17193112 +5 - chr16 17193112 17193187 chr16,17193112,17193187,-,Charlie8,DNA,hAT-Charlie,-2046,382,318,17191066,17193504 +6 - chr16 17193238 17193443 chr16,17193238,17193443,-,MIRb,SINE,MIR,-14,254,35,17193224,17193477 +6 - chr16 17194186 17194232 chr16,17194186,17194313,-,MIR,SINE,MIR,-101,161,16,17194085,17194328 +1 - chr16 17227023 17227038 chr16,17226864,17227038,+,MIRb,SINE,MIR,88,265,-3,17226777,17227041 -5 + chr16 17227138 17227457 chr16,17227138,17227457,-,L2c,LINE,L2,-116,3271,2917,17227022,17230373 +6 - chr16 17227524 17227624 chr16,17227524,17227624,+,MER117,DNA,hAT-Charlie,85,187,-10,17227440,17227634 -6 + chr16 17227635 17228000 chr16,17227635,17228011,-,L2c,LINE,L2,-570,2849,2454,17227065,17230464 +1 - chr16 17249674 17249685 chr16,17249645,17249685,+,(GTTT)n,Simple_repeat,Simple_repeat,1,40,0,17249645,17249685 -5 + chr16 17249685 17249975 chr16,17249685,17249975,-,AluSz6,SINE,Alu,-29,283,1,17249656,17249975 +6 - chr16 17250202 17250253 chr16,17250202,17250253,+,L2a,LINE,L2,3335,3384,-42,17246868,17250295 -6 + chr16 17250253 17250552 chr16,17250253,17250552,+,MER58B,DNA,hAT-Charlie,30,324,-17,17250224,17250569 -6 + chr16 17250882 17250977 chr16,17250882,17250977,-,MIRc,SINE,MIR,-51,217,122,17250831,17251098 +6 - chr16 17446151 17446250 chr16,17446151,17446250,+,MER91A,DNA,hAT-Tip100,2,111,-85,17446150,17446335 -6 + chr16 17446260 17446283 chr16,17446260,17446283,+,(AAAT)n,Simple_repeat,Simple_repeat,1,23,0,17446260,17446283 -6 + chr16 17446342 17446380 chr16,17446342,17446513,-,MIR,SINE,MIR,-55,207,34,17446287,17446546 +1 - chr16 17540331 17540344 chr16,17540208,17540344,+,MamTip2,DNA,hAT-Tip100,10,143,-162,17540199,17540506 -5 + chr16 17540360 17540577 chr16,17540360,17540577,+,MLT1K,LTR,ERVL-MaLR,136,378,-217,17540225,17540794 -6 + chr16 17540577 17540842 chr16,17540577,17540863,+,AluJo,SINE,Alu,17,300,-12,17540561,17540875 -2 + chr16 17540947 17540958 chr16,17540863,17540958,+,MLT1K,LTR,ERVL-MaLR,379,471,-124,17540485,17541082 -4 + chr16 17540963 17540985 chr16,17540963,17541400,+,L2b,LINE,L2,2985,3426,0,17537979,17541400 -1 + chr16 17825286 17825464 chr16,17825286,17825464,-,MIRb,SINE,MIR,-48,220,36,17825238,17825499 -6 - chr16 17825956 17826214 chr16,17825956,17826214,+,L1ME4a,LINE,L1,5818,6084,-40,17820139,17826254 +6 + chr16 17961723 17961801 chr16,17961723,17961801,+,GA-rich,Low_complexity,Low_complexity,1,80,0,17961723,17961801 +6 + chr16 17961878 17962370 chr16,17961878,17962428,+,LTR12_,LTR,ERV1,1,688,0,17961878,17962428 +5 + chr16 17967393 17967520 chr16,17967105,17967520,+,MSTA,LTR,ERVL-MaLR,1,427,-1,17967105,17967521 -5 + chr16 17967520 17967580 chr16,17967520,17967580,+,MIRc,SINE,MIR,148,209,-59,17967373,17967639 -6 + chr16 17971840 17971869 chr16,17971652,17971869,-,MIR,SINE,MIR,-28,234,15,17971624,17971883 +4 - chr16 17972478 17972525 chr16,17972478,17972525,+,(GGAGGCA)n,Simple_repeat,Simple_repeat,1,47,0,17972478,17972525 -6 + chr16 18002806 18002999 chr16,18002715,18002999,-,MER90,LTR,ERV1,0,575,269,18002715,18003267 +5 - chr16 18002999 18003034 chr16,18002999,18003034,+,(TTA)n,Simple_repeat,Simple_repeat,1,35,0,18002999,18003034 -6 + chr16 18003034 18003293 chr16,18003034,18003293,-,MER90,LTR,ERV1,-307,268,2,18002727,18003294 +6 - chr16 18151452 18151557 chr16,18151448,18151557,+,L2c,LINE,L2,3029,3153,-234,18148420,18151791 -4 + chr16 18201501 18201525 chr16,18201489,18201525,+,(T)n,Simple_repeat,Simple_repeat,1,36,0,18201489,18201525 +1 + chr16 18201525 18201629 chr16,18201525,18201629,-,AluSz6,SINE,Alu,-34,278,175,18201491,18201803 -6 - chr16 18201675 18201742 chr16,18201675,18201742,+,MER103C,DNA,hAT-Charlie,78,161,-136,18201598,18201878 +6 + chr16 18201779 18201956 chr16,18201779,18202023,-,MLT1A0,LTR,ERVL-MaLR,0,365,133,18201779,18202155 -5 - chr16 18402578 18402614 chr16,18402578,18402614,+,GA-rich,Low_complexity,Low_complexity,1,37,0,18402578,18402614 +6 + chr16 18402706 18402804 chr16,18402706,18402804,-,MIR,SINE,MIR,-64,198,94,18402642,18402897 -6 - chr16 18402805 18403113 chr16,18402805,18403113,+,AluJb,SINE,Alu,2,312,0,18402804,18403113 +6 + chr16 18403118 18403416 chr16,18403118,18403416,+,AluSx1,SINE,Alu,1,298,-14,18403118,18403430 +6 + chr16 18403448 18403604 chr16,18403448,18403643,+,MLT1J1,LTR,ERVL-MaLR,235,423,-21,18403214,18403664 +5 + chr16 18411309 18411360 chr16,18411182,18411360,-,MER58A,DNA,hAT-Charlie,-16,208,28,18411166,18411387 +5 - chr16 18803083 18803141 chr16,18803059,18803141,-,AluSz6,SINE,Alu,0,312,240,18803059,18803380 -1 - chr16 18927068 18927137 chr16,18927068,18927375,+,AluSq2,SINE,Alu,1,307,-6,18927068,18927381 +4 + chr16 18936856 18937043 chr16,18936806,18937237,+,LTR33,LTR,ERVL,10,461,-54,18936797,18937291 +5 + chr16 19062499 19062598 chr16,19062345,19062635,+,AluSp,SINE,Alu,1,294,-19,19062345,19062654 -5 + chr16 19065991 19066038 chr16,19065917,19066038,-,L1ME4a,LINE,L1,-340,5784,5654,19065577,19071691 -1 - chr16 19066038 19066333 chr16,19066038,19066333,+,AluSz,SINE,Alu,1,312,0,19066038,19066333 +6 + chr16 19066333 19066394 chr16,19066333,19066394,-,L1ME4a,LINE,L1,-471,5653,5593,19065862,19071986 -6 - chr16 19093221 19093306 chr16,19093209,19093306,-,AluSx3,SINE,Alu,-46,265,155,19093163,19093460 -2 - chr16 19093308 19093477 chr16,19093308,19093556,+,MSTC,LTR,ERVL-MaLR,179,428,0,19093130,19093556 +4 + chr16 19097672 19097865 chr16,19097666,19097865,-,MLT1K,LTR,ERVL-MaLR,-115,480,249,19097551,19098113 -2 - chr16 19097892 19098110 chr16,19097892,19098372,+,MLT1H,LTR,ERVL-MaLR,72,548,-1,19097821,19098373 +5 + chr16 19111035 19111098 chr16,19111033,19111098,-,MIR1_Amn,SINE,MIR,-65,165,97,19110968,19111194 +5 - chr16 19111103 19111255 chr16,19111103,19111255,+,MLT1K,LTR,ERVL-MaLR,5,158,-437,19111099,19111692 -6 + chr16 19111260 19111484 chr16,19111260,19111618,-,MLT1A,LTR,ERVL-MaLR,0,374,20,19111260,19111637 +1 - chr16 19120081 19120191 chr16,19120081,19120381,-,AluJo,SINE,Alu,-12,300,1,19120069,19120381 +2 - chr16 19120709 19120767 chr16,19120427,19120767,-,AluSq,SINE,Alu,-4,309,1,19120423,19120767 +4 - chr16 19304881 19305078 chr16,19304715,19305078,-,LTR16B1,LTR,ERVL,-28,452,87,19304687,19305164 -1 - chr16 19309246 19309347 chr16,19309246,19309347,-,MLT1K,LTR,ERVL-MaLR,-26,569,476,19309220,19309822 -6 - chr16 19309344 19309407 chr16,19309344,19309407,-,MLT1K,LTR,ERVL-MaLR,-334,261,199,19309010,19309605 -6 - chr16 19309478 19309632 chr16,19309478,19309632,+,L1MA9,LINE,L1,5981,6134,-178,19303498,19309810 +6 + chr16 19309632 19309943 chr16,19309632,19309943,-,AluJb,SINE,Alu,-19,293,1,19309613,19309943 -6 - chr16 19309943 19309970 chr16,19309943,19309970,+,L1MA9,LINE,L1,6135,6153,-159,19303809,19310129 +6 + chr16 19309971 19310027 chr16,19309971,19310027,-,MLT1K,LTR,ERVL-MaLR,-482,113,61,19309489,19310087 -6 - chr16 19310027 19310186 chr16,19310027,19310186,+,L1MB5,LINE,L1,5527,5690,-484,19304501,19310670 +6 + chr16 19310186 19310490 chr16,19310186,19310490,+,AluJr,SINE,Alu,1,302,-10,19310186,19310500 +6 + chr16 19310490 19310947 chr16,19310490,19310953,+,L1MB5,LINE,L1,5691,6153,-21,19304800,19310974 +5 + chr16 19315164 19315257 chr16,19315146,19315257,+,(AATAGAT)n,Simple_repeat,Simple_repeat,1,117,0,19315146,19315257 +1 + chr16 19315462 19315640 chr16,19315462,19315640,-,L1M5,LINE,L1,-326,5798,5601,19315136,19321240 -6 - chr16 19315678 19315829 chr16,19315678,19315829,+,L1MA10,LINE,L1,6186,6332,-2,19309493,19315831 +6 + chr16 19315858 19315889 chr16,19315858,19315889,+,(TG)n,Simple_repeat,Simple_repeat,1,31,0,19315858,19315889 +6 + chr16 19315961 19316254 chr16,19315961,19316254,+,LTR16B2,LTR,ERVL,1,340,-122,19315961,19316376 +6 + chr16 19316268 19316521 chr16,19316268,19316521,+,L1ME3G,LINE,L1,654,924,0,19315615,19316521 +6 + chr16 19343647 19343845 chr16,19343631,19343845,+,MER20,DNA,hAT-Charlie,2,218,-1,19343630,19343846 -5 + chr16 19343845 19344219 chr16,19343845,19344219,+,MLT1J,LTR,ERVL-MaLR,55,475,-37,19343791,19344256 -6 + chr16 19367811 19367878 chr16,19367730,19368075,-,MSTD,LTR,ERVL-MaLR,0,396,19,19367730,19368093 +1 - chr16 19392213 19392479 chr16,19392202,19392479,-,AluJr,SINE,Alu,-12,300,3,19392190,19392481 +5 - chr16 19392513 19392596 chr16,19392513,19392596,+,MIRc,SINE,MIR,173,258,-10,19392341,19392606 -6 + chr16 19392725 19392911 chr16,19392725,19392911,-,L2a,LINE,L2,-4,3422,3216,19392721,19396126 +6 - chr16 19392913 19393172 chr16,19392913,19393172,+,AluJr4,SINE,Alu,2,263,-49,19392912,19393221 -6 + chr16 19393177 19393473 chr16,19393177,19393473,+,MER41G,LTR,ERV1,593,885,0,19392585,19393473 -1 + chr16 19393474 19393547 chr16,19393474,19393581,-,L2a,LINE,L2,-799,2620,2502,19392675,19396082 +2 - chr16 19395983 19396249 chr16,19394166,19401565,-,HERVK14C-int,LTR,ERVK,0,7434,1,19394166,19401565 +3 - chr16 19401440 19401565 chr16,19394166,19401565,-,HERVK14C-int,LTR,ERVK,0,7434,1,19394166,19401565 +4 - chr16 19401565 19401693 chr16,19401565,19402152,-,LTR14C,LTR,ERVK,0,587,1,19401565,19402152 +1 - chr16 19411245 19411298 chr16,19411245,19411302,+,MIR,SINE,MIR,80,136,-126,19411166,19411428 -2 + chr16 19411568 19411662 chr16,19411514,19411690,+,MIR,SINE,MIR,28,204,-58,19411487,19411748 -1 + chr16 19476916 19476965 chr16,19476696,19476965,-,MLT1I,LTR,ERVL-MaLR,0,411,140,19476696,19477104 +5 - chr16 19476965 19477080 chr16,19476965,19477267,+,AluY,SINE,Alu,2,301,-10,19476964,19477277 -2 + chr16 19487824 19487899 chr16,19487758,19488251,-,MER74A,LTR,ERVL,-39,519,2,19487719,19488252 +1 - chr16 19502123 19502286 chr16,19502123,19502373,+,MIRb,SINE,MIR,4,258,-4,19502120,19502377 +5 + chr16 19503879 19504362 chr16,19503879,19504362,+,L2b,LINE,L2,2912,3366,-9,19500968,19504371 +6 + chr16 19694035 19694228 chr16,19693976,19694228,+,L1MA4A,LINE,L1,6056,6294,-9,19687921,19694237 -5 + chr16 19706351 19706526 chr16,19706343,19706526,+,MIR,SINE,MIR,65,258,-4,19706279,19706530 +1 + chr16 19706733 19706861 chr16,19706733,19706861,+,MER85,DNA,PiggyBac,1,138,-1,19706733,19706862 +6 + chr16 19714819 19714844 chr16,19714819,19714844,+,(CTT)n,Simple_repeat,Simple_repeat,1,25,0,19714819,19714844 +6 + chr16 19714976 19714995 chr16,19714976,19714995,+,(TTC)n,Simple_repeat,Simple_repeat,1,19,0,19714976,19714995 +6 + chr16 19715197 19715383 chr16,19715197,19715390,+,MIRb,SINE,MIR,24,225,-43,19715174,19715433 +5 + chr16 19761172 19761227 chr16,19760681,19761227,-,MER41A,LTR,ERV1,0,554,1,19760681,19761227 +5 - chr16 19761227 19761302 chr16,19761227,19761302,-,MLT1C,LTR,ERVL-MaLR,-382,85,3,19760845,19761304 +6 - chr16 19761314 19761476 chr16,19761314,19761476,-,LTR33,LTR,ERVL,-337,178,1,19760977,19761476 +5 - chr16 19761780 19762036 chr16,19761780,19762277,-,MLT1J,LTR,ERVL-MaLR,-19,493,1,19761761,19762277 +2 - chr16 20209253 20209525 chr16,20209195,20209572,+,MLT1B,LTR,ERVL-MaLR,1,390,0,20209195,20209572 +5 + chr16 20390608 20390720 chr16,20390262,20390720,+,L2a,LINE,L2,2916,3425,-1,20387347,20390721 +2 + chr16 20390757 20390881 chr16,20390757,20390881,+,MIRb,SINE,MIR,29,156,-112,20390729,20390993 +6 + chr16 20390933 20391164 chr16,20390933,20391427,+,(ATC)n,Simple_repeat,Simple_repeat,1,495,0,20390933,20391427 +5 + chr16 20441406 20441586 chr16,20441406,20441911,-,MLT2B1,LTR,ERVL,0,520,1,20441406,20441911 +1 - chr16 20442226 20442388 chr16,20442154,20442558,-,MLT1B,LTR,ERVL-MaLR,-6,384,6,20442148,20442563 +3 - chr16 20446867 20447000 chr16,20446813,20447004,+,MIRb,SINE,MIR,22,222,-46,20446792,20447050 -1 + chr16 20488007 20488178 chr16,20488007,20488178,-,MIR,SINE,MIR,0,262,99,20488007,20488276 -6 - chr16 20488293 20488343 chr16,20488293,20488343,-,MLT2B1,LTR,ERVL,0,520,474,20488293,20488816 -6 - chr16 20488343 20488437 chr16,20488343,20488437,-,MER47C,DNA,TcMar-Tigger,-4,93,1,20488339,20488437 -6 - chr16 20488437 20488471 chr16,20488437,20488471,-,MLT2B1,LTR,ERVL,-47,473,442,20488390,20488912 -6 - chr16 20488471 20488521 chr16,20488471,20488521,+,(GA)n,Simple_repeat,Simple_repeat,1,50,0,20488471,20488521 +6 + chr16 20488521 20488922 chr16,20488521,20488922,-,MLT2B1,LTR,ERVL,-79,441,1,20488442,20488922 -6 - chr16 20580888 20581021 chr16,20580883,20581074,-,MIRb,SINE,MIR,-46,222,22,20580837,20581095 -1 - chr16 20585500 20585662 chr16,20585329,20585733,+,MLT1B,LTR,ERVL-MaLR,6,384,-6,20585324,20585739 +3 + chr16 20586302 20586481 chr16,20585976,20586481,+,MLT2B1,LTR,ERVL,1,520,0,20585976,20586481 +2 + chr16 20586569 20586684 chr16,20586569,20587121,-,L1ME4a,LINE,L1,-4,6120,5520,20586565,20592640 -5 - chr16 20766601 20766620 chr16,20766491,20766718,+,AluJr,SINE,Alu,53,276,-36,20766439,20766754 -1 + chr16 21129220 21129360 chr16,21128993,21129360,+,L2a,LINE,L2,2799,3157,-269,21126195,21129629 +2 + chr16 21129982 21130070 chr16,21129869,21130070,+,L2a,LINE,L2,3196,3426,0,21126674,21130070 +2 + chr16 21130071 21130082 chr16,21130071,21130082,+,(AATA)n,Simple_repeat,Simple_repeat,1,42,0,21130071,21130082 +6 + chr16 21130082 21130108 chr16,21130082,21130113,+,(A)n,Simple_repeat,Simple_repeat,1,31,0,21130082,21130113 +5 + chr16 21303247 21303327 chr16,21303245,21303327,-,MER67D,LTR,ERV1,-419,95,4,21302826,21303330 -1 - chr16 21317663 21317966 chr16,21317663,21317966,+,AluSz6,SINE,Alu,1,300,-12,21317663,21317978 +5 + chr16 21318018 21318050 chr16,21318018,21318050,+,(CA)n,Simple_repeat,Simple_repeat,1,32,0,21318018,21318050 +6 + chr16 21318286 21318591 chr16,21318286,21318665,-,L1MEg,LINE,L1,-3213,2933,2554,21315073,21321218 -5 - chr16 21531102 21531141 chr16,21530885,21531270,+,L2a,LINE,L2,2942,3425,-1,21527944,21531271 -1 + chr16 21794095 21794265 chr16,21794019,21794265,+,MER113B,DNA,hAT-Charlie,3,258,-44,21794017,21794309 -5 + chr16 21794273 21794421 chr16,21794273,21794421,-,MLT1H,LTR,ERVL-MaLR,-212,337,199,21794061,21794619 +6 - chr16 21794563 21795094 chr16,21794563,21795094,+,MamRep1527,LTR,LTR,259,854,-115,21794305,21795209 -6 + chr16 21950218 21950326 chr16,21950103,21950326,+,L1M5,LINE,L1,3686,3925,-2221,21946418,21952547 -5 + chr16 21950385 21950674 chr16,21950385,21950674,-,AluSx1,SINE,Alu,-30,282,1,21950355,21950674 +6 - chr16 21951165 21951219 chr16,21951165,21951219,-,MamRep564,Unknown,Unknown,-63,294,240,21951102,21951458 +6 - chr16 21951263 21951300 chr16,21951263,21951300,+,(GATATTAT)n,Simple_repeat,Simple_repeat,1,41,0,21951263,21951300 -6 + chr16 21951391 21951424 chr16,21951391,21951424,+,(GT)n,Simple_repeat,Simple_repeat,1,33,0,21951391,21951424 -6 + chr16 21951552 21951643 chr16,21951552,21951643,-,L2,LINE,L2,-511,2908,2817,21951041,21954459 +6 - chr16 22007480 22007647 chr16,22006872,22007647,+,L2a,LINE,L2,2507,3419,-7,22004366,22007654 -5 + chr16 22007898 22007945 chr16,22007898,22007945,+,G-rich,Low_complexity,Low_complexity,1,50,0,22007898,22007945 -6 + chr16 22085943 22086135 chr16,22085943,22086135,-,MIR3,SINE,MIR,-3,205,14,22085940,22086148 +6 - chr16 22086090 22086194 chr16,22086090,22086383,+,L2,LINE,L2,2683,2997,-422,22083408,22086805 -2 + chr16 22090023 22090248 chr16,22089992,22090415,+,MLT1K,LTR,ERVL-MaLR,70,578,-17,22089923,22090432 -1 + chr16 22286708 22286793 chr16,22286670,22286793,+,L2a,LINE,L2,3248,3412,-14,22283423,22286807 -5 + chr16 22288391 22288441 chr16,22288290,22288441,-,AluJr4,SINE,Alu,-167,145,1,22288123,22288441 +4 - chr16 22367046 22367166 chr16,22367021,22367327,-,AluJr,SINE,Alu,-9,303,1,22367012,22367327 -3 - chr16 22375473 22375564 chr16,22375473,22375564,+,HAL1,LINE,L1,2045,2137,-328,22373429,22375892 +6 + chr16 22375702 22375854 chr16,22375702,22375854,+,HAL1,LINE,L1,2225,2382,-125,22373478,22375979 +6 + chr16 22375854 22376151 chr16,22375854,22376151,+,AluSp,SINE,Alu,1,305,-8,22375854,22376159 +6 + chr16 22376151 22376211 chr16,22376151,22376211,+,HAL1,LINE,L1,2383,2451,-56,22373769,22376267 +6 + chr16 22378141 22378180 chr16,22378121,22378415,-,AluSz6,SINE,Alu,-14,298,1,22378107,22378415 -5 - chr16 22610531 22610701 chr16,22610455,22610701,+,MER113B,DNA,hAT-Charlie,3,258,-44,22610453,22610745 -5 + chr16 22610709 22610857 chr16,22610709,22610857,-,MLT1H,LTR,ERVL-MaLR,-212,337,199,22610497,22611055 +6 - chr16 22610999 22611531 chr16,22610999,22611531,+,MamRep1527,LTR,LTR,259,854,-115,22610741,22611646 -6 + chr16 22612543 22612632 chr16,22612399,22612632,-,LTR89,LTR,ERVL?,-341,538,273,22612058,22612904 +5 - chr16 22612650 22612887 chr16,22612650,22612935,+,AluSq,SINE,Alu,6,303,-10,22612645,22612945 -2 + chr16 22613454 22613483 chr16,22613414,22613772,-,L1MB3,LINE,L1,0,6183,5827,22613414,22619598 +1 - chr16 23020372 23020555 chr16,23020372,23020555,-,MLT1K,LTR,ERVL-MaLR,-321,274,80,23020051,23020634 -6 - chr16 23022963 23022994 chr16,23022895,23022994,-,MLT1K,LTR,ERVL-MaLR,-150,445,350,23022745,23023343 -2 - chr16 23023384 23023425 chr16,23023384,23023425,+,(AC)n,Simple_repeat,Simple_repeat,1,41,0,23023384,23023425 +6 + chr16 23023425 23023484 chr16,23023425,23023484,-,L1MD2,LINE,L1,-16,6343,6291,23023409,23029774 -6 - chr16 23023484 23023611 chr16,23023484,23023785,+,AluSz,SINE,Alu,1,303,-9,23023484,23023794 +5 + chr16 23062316 23062357 chr16,23062316,23062357,+,A-rich,Low_complexity,Low_complexity,1,41,0,23062316,23062357 -6 + chr16 23062957 23063109 chr16,23062957,23063109,+,MER5B,DNA,hAT-Charlie,2,153,-25,23062956,23063134 -6 + chr16 23194878 23195021 chr16,23194826,23195214,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,23194824,23195214 +5 - chr16 23195925 23196016 chr16,23195906,23196519,-,L2a,LINE,L2,0,3426,2798,23195906,23199316 +3 - chr16 23196404 23196519 chr16,23195906,23196519,-,L2a,LINE,L2,0,3426,2798,23195906,23199316 +4 - chr16 23412380 23412502 chr16,23412259,23412502,-,MER102b,DNA,hAT-Charlie,-86,255,13,23412173,23412514 -1 - chr16 23412692 23412985 chr16,23412692,23412985,-,AluSz,SINE,Alu,-19,293,1,23412673,23412985 -6 - chr16 23413262 23413299 chr16,23413262,23413299,+,(GTTGG)n,Simple_repeat,Simple_repeat,1,38,0,23413262,23413299 +6 + chr16 23413656 23413810 chr16,23413656,23413810,-,7SK,RNA,RNA,-85,246,90,23413571,23413899 -6 - chr16 23414214 23414344 chr16,23414214,23414344,+,FLAM_C,SINE,Alu,5,133,-10,23414210,23414354 +6 + chr16 23414349 23414640 chr16,23414349,23414640,+,AluJb,SINE,Alu,4,294,-18,23414346,23414658 +6 + chr16 23414651 23414751 chr16,23414651,23414751,+,L2c,LINE,L2,3237,3352,-35,23411415,23414786 +6 + chr16 23415531 23415676 chr16,23415531,23415676,-,MIRb,SINE,MIR,-36,232,71,23415495,23415746 -6 - chr16 23416024 23416328 chr16,23416024,23416328,-,AluSq2,SINE,Alu,-7,306,1,23416017,23416328 -6 - chr16 23416515 23416632 chr16,23416515,23416632,-,AluSz,SINE,Alu,-195,117,1,23416320,23416632 -6 - chr16 23416642 23416680 chr16,23416642,23416695,+,MER57D,LTR,ERV1,355,407,-4,23416288,23416699 +5 + chr16 23446446 23446751 chr16,23446445,23446751,-,AluSx1,SINE,Alu,-6,306,1,23446439,23446751 +5 - chr16 23446761 23447049 chr16,23446761,23447049,-,AluJb,SINE,Alu,-22,290,1,23446739,23447049 +6 - chr16 23447050 23447167 chr16,23447050,23447167,+,L2,LINE,L2,2636,2750,-669,23444415,23447836 -6 + chr16 23447215 23447282 chr16,23447215,23447510,-,AluSz6,SINE,Alu,-16,296,1,23447199,23447510 +1 - chr16 23455470 23455769 chr16,23455468,23455769,+,AluSg,SINE,Alu,6,302,-8,23455463,23455777 +2 + chr16 23455769 23455789 chr16,23455769,23455854,-,L1M4b,LINE,L1,-1741,5265,5194,23454028,23461047 -5 - chr16 23457428 23457551 chr16,23457422,23457551,+,AluSx3,SINE,Alu,158,289,-22,23457265,23457573 +2 + chr16 23457551 23457606 chr16,23457551,23457739,-,L1M4b,LINE,L1,-2745,4261,4060,23454806,23461798 -5 - chr16 23568673 23568853 chr16,23568538,23568853,+,AluSx1,SINE,Alu,1,312,0,23568538,23568853 +1 + chr16 23569237 23569271 chr16,23569237,23569271,-,L1ME3Cz,LINE,L1,0,997,960,23569237,23570230 -6 - chr16 23569271 23569582 chr16,23569271,23569582,+,AluSz,SINE,Alu,1,310,-2,23569271,23569584 +6 + chr16 23569582 23569696 chr16,23569582,23570098,-,L1ME3Cz,LINE,L1,-38,959,392,23569544,23570489 -5 - chr16 23605841 23605956 chr16,23605724,23606033,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,23605724,23606033 +1 + chr16 23607315 23607383 chr16,23607288,23607585,-,AluJr,SINE,Alu,-11,301,11,23607277,23607595 -3 - chr16 23617600 23617764 chr16,23617437,23617764,+,AluJb,SINE,Alu,1,303,-9,23617437,23617773 +2 + chr16 23670011 23670095 chr16,23669942,23670095,+,L2c,LINE,L2,3193,3384,-42,23666750,23670137 +1 + chr16 23670897 23671069 chr16,23670897,23671069,-,L2b,LINE,L2,0,3375,3186,23670897,23674254 -6 - chr16 23671082 23671307 chr16,23671082,23671307,+,MIR,SINE,MIR,10,260,-2,23671073,23671309 +6 + chr16 23671488 23671671 chr16,23671488,23671671,-,MIRb,SINE,MIR,-74,194,13,23671414,23671683 -6 - chr16 23672852 23673144 chr16,23672845,23673144,+,AluYm1,SINE,Alu,1,298,-13,23672845,23673157 +2 + chr16 23673146 23673165 chr16,23673146,23673165,+,(ACA)n,Simple_repeat,Simple_repeat,1,19,0,23673146,23673165 +6 + chr16 23673278 23673406 chr16,23673278,23673406,-,AluJb,SINE,Alu,-178,134,1,23673100,23673406 -6 - chr16 23673525 23673579 chr16,23673525,23673579,+,AluSc,SINE,Alu,120,173,-136,23673406,23673715 +6 + chr16 23673590 23673673 chr16,23673590,23674137,+,MER68-int,LTR,ERVL,723,1334,-1656,23672868,23675793 +5 + chr16 23675218 23675499 chr16,23675218,23675517,+,AluJb,SINE,Alu,1,300,-12,23675218,23675529 +5 + chr16 23696730 23696813 chr16,23696730,23696813,-,MER91C,DNA,hAT-Tip100,-19,121,32,23696711,23696844 +6 - chr16 23696903 23697170 chr16,23696903,23697170,+,AluJb,SINE,Alu,1,282,-30,23696903,23697200 -6 + chr16 23697170 23697215 chr16,23697170,23697215,+,(AAT)n,Simple_repeat,Simple_repeat,1,45,0,23697170,23697215 -6 + chr16 23712383 23712439 chr16,23712232,23712439,+,MER102c,DNA,hAT-Charlie,2,202,-2226,23712231,23714665 +2 + chr16 23712631 23712783 chr16,23712631,23712783,+,Charlie4z,DNA,hAT-Charlie,5,160,-7,23712627,23712790 +6 + chr16 23753689 23753807 chr16,23753507,23753807,-,AluJo,SINE,Alu,-20,292,1,23753487,23753807 +5 - chr16 23753807 23753881 chr16,23753807,23753881,-,MER106B,DNA,hAT-Charlie,-82,977,903,23753725,23754783 +6 - chr16 23754264 23754391 chr16,23754264,23754391,-,Charlie8,DNA,hAT-Charlie,-2255,173,40,23752009,23754430 +6 - chr16 23754403 23754500 chr16,23754403,23754500,-,MIRb,SINE,MIR,-151,117,3,23754252,23754502 +6 - chr16 23962951 23963138 chr16,23962752,23963138,-,L1PB2,LINE,L1,-2,6149,5762,23962750,23968899 -1 - chr16 23963140 23963350 chr16,23963140,23963350,+,MIRb,SINE,MIR,47,254,-14,23963094,23963364 +6 + chr16 24098239 24098467 chr16,24098183,24098467,-,LTR37B,LTR,ERV1,0,468,199,24098183,24098665 -1 - chr16 24098467 24098730 chr16,24098467,24098730,+,AluSq,SINE,Alu,1,263,-50,24098467,24098780 +6 + chr16 24098730 24098948 chr16,24098730,24098948,-,LTR37B,LTR,ERV1,-270,198,1,24098460,24098948 -6 - chr16 24099102 24099162 chr16,24099102,24099162,-,MIRb,SINE,MIR,0,268,209,24099102,24099370 -6 - chr16 24099356 24099684 chr16,24099356,24099684,-,MER4D,LTR,ERV1,0,903,563,24099356,24100246 -6 - chr16 24099690 24099971 chr16,24099690,24099990,+,AluSz,SINE,Alu,1,301,-11,24099690,24100001 +5 + chr16 24208105 24208121 chr16,24207748,24208121,-,L2c,LINE,L2,-226,3161,2795,24207522,24210915 -1 - chr16 24208121 24208299 chr16,24208121,24208299,+,AluJo,SINE,Alu,134,310,-2,24207988,24208301 +6 + chr16 24208369 24208405 chr16,24208369,24208405,+,A-rich,Low_complexity,Low_complexity,1,36,0,24208369,24208405 +6 + chr16 24237982 24238033 chr16,24237920,24238061,-,L2a,LINE,L2,0,3426,3266,24237920,24241326 -1 - chr16 24247092 24247191 chr16,24247066,24247191,-,MLT1J,LTR,ERVL-MaLR,-154,358,231,24246912,24247421 -2 - chr16 24247286 24247545 chr16,24247286,24247734,-,L1MB4,LINE,L1,-6,6174,5716,24247280,24253449 -5 - chr16 24251933 24251960 chr16,24251890,24251960,-,HAL1ME,LINE,L1,-366,2099,2030,24251524,24253989 -2 - chr16 24252707 24252828 chr16,24252695,24252828,+,MLT1O,LTR,ERVL-MaLR,389,523,-19,24252307,24252847 +2 + chr16 24472798 24472854 chr16,24472673,24472854,+,LTR50,LTR,ERVL,551,716,-79,24472123,24472933 -5 + chr16 24472854 24473165 chr16,24472854,24473165,+,AluSz,SINE,Alu,1,308,-4,24472854,24473169 -6 + chr16 24473165 24473180 chr16,24473165,24473180,+,LTR50,LTR,ERVL,717,731,-64,24472449,24473244 -6 + chr16 24473180 24473304 chr16,24473180,24473304,-,FLAM_C,SINE,Alu,-15,128,3,24473165,24473306 +6 - chr16 24473304 24473342 chr16,24473304,24473342,+,LTR50,LTR,ERVL,732,755,-40,24472573,24473382 -6 + chr16 24473342 24473475 chr16,24473342,24473475,+,FLAM_C,SINE,Alu,1,133,-10,24473342,24473485 -6 + chr16 24473475 24473538 chr16,24473475,24473538,+,LTR50,LTR,ERVL,756,794,-1,24472720,24473539 -6 + chr16 24473852 24473907 chr16,24473852,24473907,-,L2c,LINE,L2,-4,3383,3328,24473848,24477234 +6 - chr16 24474095 24474302 chr16,24474095,24474302,+,MLT1J2,LTR,ERVL-MaLR,64,290,-158,24474032,24474460 -6 + chr16 24474302 24474788 chr16,24474302,24474788,+,MLT1F,LTR,ERVL-MaLR,5,546,-2,24474298,24474790 -6 + chr16 24474788 24474928 chr16,24474788,24474928,+,MLT1J2,LTR,ERVL-MaLR,291,422,-26,24474498,24474954 -6 + chr16 24475341 24475740 chr16,24475341,24475740,-,MLT1B,LTR,ERVL-MaLR,-2,388,11,24475339,24475750 +6 - chr16 24475741 24475843 chr16,24475741,24475843,+,(TCTC)n,Simple_repeat,Simple_repeat,1,104,0,24475741,24475843 -6 + chr16 24475890 24476181 chr16,24475890,24476181,+,AluSz,SINE,Alu,1,291,-21,24475890,24476202 -6 + chr16 24476511 24476552 chr16,24476511,24476552,+,(AT)n,Simple_repeat,Simple_repeat,1,42,0,24476511,24476552 -6 + chr16 24476822 24476956 chr16,24476822,24476956,+,AluJr,SINE,Alu,1,132,-180,24476822,24477136 -6 + chr16 24476957 24476992 chr16,24476957,24476992,+,A-rich,Low_complexity,Low_complexity,1,35,0,24476957,24476992 -6 + chr16 24477033 24477296 chr16,24477033,24477296,-,MLT1L,LTR,ERVL-MaLR,0,610,291,24477033,24477586 +6 - chr16 24477296 24477616 chr16,24477296,24477616,-,AluJo,SINE,Alu,0,312,2,24477296,24477617 +6 - chr16 24477616 24477815 chr16,24477616,24477815,-,MLT1L,LTR,ERVL-MaLR,-320,290,88,24477296,24477902 +6 - chr16 24477872 24478068 chr16,24477872,24478068,-,MamGypLTR2c,LTR,Gypsy,-25,1043,862,24477847,24478929 +6 - chr16 24478295 24478907 chr16,24478295,24478907,+,LTR9D,LTR,ERV1,1,645,0,24478295,24478907 -6 + chr16 24494984 24494998 chr16,24494931,24494998,+,MIR,SINE,MIR,27,93,-115,24494905,24495113 -4 + chr16 24494999 24495177 chr16,24494999,24495637,-,LTR9D,LTR,ERV1,0,645,1,24494999,24495637 +1 - chr16 24640884 24640957 chr16,24640856,24640979,-,MIR3,SINE,MIR,-48,160,34,24640808,24641012 -5 - chr16 24661422 24661711 chr16,24661408,24661711,-,AluSc,SINE,Alu,-6,303,1,24661402,24661711 +5 - chr16 24661935 24662066 chr16,24661935,24662066,+,AluJo,SINE,Alu,158,288,-24,24661778,24662090 -6 + chr16 24662167 24662503 chr16,24662167,24662503,+,AluJb,SINE,Alu,1,302,-10,24662167,24662513 -6 + chr16 24662542 24662668 chr16,24662542,24662668,+,L1MC5a,LINE,L1,454,547,-2230,24662089,24664898 -6 + chr16 24663101 24663137 chr16,24663101,24663137,+,GA-rich,Low_complexity,Low_complexity,1,38,0,24663101,24663137 -6 + chr16 24663137 24663270 chr16,24663137,24663270,-,MER77,LTR,ERVL,0,604,473,24663137,24663742 +6 - chr16 24663270 24663581 chr16,24663270,24663581,+,AluSx1,SINE,Alu,1,308,-4,24663270,24663585 -6 + chr16 24663581 24664004 chr16,24663581,24664016,-,MER77,LTR,ERVL,-132,472,1,24663449,24664016 +2 - chr16 24803451 24803490 chr16,24803440,24803490,+,MIR,SINE,MIR,210,256,-6,24803231,24803496 -5 + chr16 24803617 24803895 chr16,24803617,24803918,+,AluSz,SINE,Alu,1,302,-10,24803617,24803928 -2 + chr16 24819606 24819621 chr16,24819545,24819621,+,MIR,SINE,MIR,44,131,-137,24819502,24819758 -4 + chr16 25067779 25067906 chr16,25067769,25067906,+,AluJb,SINE,Alu,155,291,-21,25067615,25067927 +2 + chr16 25068036 25068368 chr16,25068036,25068368,+,L1M5,LINE,L1,5256,5627,-497,25062781,25068865 +6 + chr16 25068509 25068826 chr16,25068509,25068826,+,L2,LINE,L2,1193,1520,-1899,25067317,25070725 +6 + chr16 25068850 25068943 chr16,25068850,25068943,+,AluJb,SINE,Alu,210,300,-12,25068641,25068955 +5 + chr16 25085633 25085772 chr16,25085633,25085888,+,MIRb,SINE,MIR,2,250,-18,25085632,25085906 -2 + chr16 25086378 25086403 chr16,25086378,25086403,+,(ACTT)n,Simple_repeat,Simple_repeat,1,25,0,25086378,25086403 -6 + chr16 25086403 25086687 chr16,25086403,25086687,-,AluSz,SINE,Alu,-28,284,1,25086375,25086687 +6 - chr16 25086687 25086706 chr16,25086687,25086706,+,(ACTT)n,Simple_repeat,Simple_repeat,2,19,0,25086686,25086706 -6 + chr16 25100564 25100599 chr16,25100530,25100599,-,FLAM_A,SINE,Alu,-25,117,49,25100505,25100647 +5 - chr16 25103482 25103572 chr16,25103482,25103572,+,L3,LINE,CR1,3771,3860,-239,25099712,25103811 -1 + chr16 25140577 25140890 chr16,25140441,25140890,-,LTR35,LTR,ERV1,0,608,157,25140441,25141046 +5 - chr16 25140925 25141348 chr16,25140925,25141348,-,PRIMA41-int,LTR,ERV1,0,6918,6240,25140925,25147587 +6 - chr16 25141348 25141656 chr16,25141348,25141656,-,AluJb,SINE,Alu,-15,297,1,25141333,25141656 +6 - chr16 25141656 25141960 chr16,25141656,25141960,-,PRIMA41-int,LTR,ERV1,-437,6239,5922,25141219,25147881 +6 - chr16 25142506 25142814 chr16,25142506,25142814,-,PRIMA41-int,LTR,ERV1,-2111,6315,6148,25140395,25148961 +6 - chr16 25142910 25147276 chr16,25142910,25147276,-,PRIMA41-int,LTR,ERV1,-1611,6145,1691,25141299,25148966 +1 - chr16 25147515 25147687 chr16,25147515,25147687,-,PRIMA41-int,LTR,ERV1,-3864,1510,1339,25143651,25149025 +6 - chr16 25147705 25147906 chr16,25147705,25147906,-,AluJo,SINE,Alu,-26,286,85,25147679,25147990 +6 - chr16 25148706 25148818 chr16,25148525,25148818,-,PRIMA41-int,LTR,ERV1,-6560,358,37,25141965,25148854 +4 - chr16 25148832 25149032 chr16,25148832,25149129,-,LTR35,LTR,ERV1,-22,586,276,25148810,25149404 +1 - chr16 25239190 25239287 chr16,25239066,25239326,+,Plat_L3,LINE,CR1,3183,3455,-131,25235884,25239457 +5 + chr16 25258548 25258604 chr16,25258548,25258604,-,L2a,LINE,L2,-24,3402,3349,25258524,25261952 -6 - chr16 25258622 25258796 chr16,25258622,25258796,-,LTR73,LTR,ERV1,-18,554,383,25258604,25259178 -6 - chr16 25258796 25259581 chr16,25258796,25259581,-,MER4E1,LTR,ERV1,0,781,20,25258796,25259600 -6 - chr16 25259581 25259892 chr16,25259581,25259892,+,AluSz6,SINE,Alu,1,310,-2,25259581,25259894 +6 + chr16 25259892 25259917 chr16,25259892,25259917,-,MER4E1,LTR,ERV1,-762,19,1,25259130,25259917 -6 - chr16 25259917 25259961 chr16,25259917,25259961,-,LTR73,LTR,ERV1,-190,382,339,25259727,25260299 -6 - chr16 25259959 25260042 chr16,25259959,25260042,+,FLAM_A,SINE,Alu,48,130,-12,25259912,25260054 +6 + chr16 25260041 25260357 chr16,25260041,25260357,-,LTR73,LTR,ERV1,-215,357,1,25259826,25260357 -6 - chr16 25260653 25260915 chr16,25260653,25260915,-,AluSz,SINE,Alu,-11,301,1,25260642,25260915 -6 - chr16 25260986 25261066 chr16,25260986,25261127,+,LTR38A1,LTR,ERV1,405,543,0,25260582,25261127 +5 + chr16 26319147 26319158 chr16,26319005,26319158,-,MIRb,SINE,MIR,-20,248,84,26318985,26319241 -2 - chr16 26319220 26319355 chr16,26319220,26319526,-,AluSc8,SINE,Alu,-20,291,1,26319200,26319526 -4 - chr16 26321252 26321341 chr16,26321233,26321521,-,AluSz,SINE,Alu,-15,297,1,26321218,26321521 -5 - chr16 26322366 26322824 chr16,26322366,26322824,+,L1ME4c,LINE,L1,232,685,-145,26322135,26322969 +1 + chr16 26322833 26323065 chr16,26322833,26323102,+,L1MB5,LINE,L1,5925,6174,0,26316909,26323102 +5 + chr16 26324145 26324263 chr16,26324063,26325334,+,L1MCb,LINE,L1,3,1420,-5331,26324061,26330665 +3 + chr16 26584755 26584944 chr16,26584708,26585075,-,MLT1J2,LTR,ERVL-MaLR,-2,446,42,26584706,26585116 +5 - chr16 26721874 26721971 chr16,26721683,26721971,+,AluSx1,SINE,Alu,1,287,-25,26721683,26721996 +1 + chr16 26721973 26722085 chr16,26721973,26722085,+,(AAGG)n,Simple_repeat,Simple_repeat,1,112,0,26721973,26722085 +6 + chr16 26722085 26722164 chr16,26722085,26722164,+,MLT1I,LTR,ERVL-MaLR,338,405,-6,26721748,26722170 +6 + chr16 26722176 26722223 chr16,26722176,26722281,+,MER112,DNA,hAT-Charlie,84,195,-66,26722093,26722347 +4 + chr16 26728828 26728918 chr16,26728828,26728918,-,MamGypLTR1c,LTR,Gypsy,-591,212,128,26728237,26729045 -6 - chr16 26728954 26728978 chr16,26728954,26728978,+,(CT)n,Simple_repeat,Simple_repeat,1,25,0,26728954,26728978 +6 + chr16 27158451 27158501 chr16,27158360,27158501,+,L1MC5a,LINE,L1,734,873,-1904,27157627,27160405 -5 + chr16 27158672 27158692 chr16,27158672,27159027,-,THE1B,LTR,ERVL-MaLR,0,364,1,27158672,27159027 +2 - chr16 27161398 27161418 chr16,27161272,27161418,-,MIR,SINE,MIR,-69,193,31,27161203,27161448 +4 - chr16 27161569 27161652 chr16,27161569,27161652,-,MLT1J1,LTR,ERVL-MaLR,-308,136,50,27161261,27161701 +6 - chr16 27171830 27171960 chr16,27171765,27171960,-,MLT1J2,LTR,ERVL-MaLR,-2,446,257,27171763,27172216 +4 - chr16 27171960 27171979 chr16,27171960,27172180,-,MER58A,DNA,hAT-Charlie,0,224,4,27171960,27172183 +2 - chr16 27176563 27176587 chr16,27176540,27176758,+,AluJr,SINE,Alu,1,229,-83,27176540,27176841 -1 + chr16 27214385 27214499 chr16,27214385,27214499,-,MIRc,SINE,MIR,-102,166,51,27214283,27214549 +6 - chr16 27214681 27214841 chr16,27214681,27214841,+,MIRb,SINE,MIR,82,239,-29,27214600,27214870 -6 + chr16 27268205 27268238 chr16,27268040,27268238,+,MER46C,DNA,TcMar-Tigger,160,338,0,27267881,27268238 +1 + chr16 27269134 27269156 chr16,27269134,27269427,+,AluSz,SINE,Alu,3,302,-10,27269132,27269437 +4 + chr16 27269858 27269947 chr16,27269858,27269947,+,MIRb,SINE,MIR,61,153,-115,27269798,27270062 +6 + chr16 27270049 27270297 chr16,27270049,27270297,+,MER2,DNA,TcMar-Tigger,1,256,-89,27270049,27270386 +6 + chr16 27270297 27271012 chr16,27270297,27271012,-,LTR8,LTR,ERV1,0,691,3,27270297,27271014 -6 - chr16 27271012 27271101 chr16,27271012,27271101,+,MER2,DNA,TcMar-Tigger,257,345,0,27270756,27271101 +6 + chr16 27271115 27271251 chr16,27271115,27271251,+,MIR,SINE,MIR,117,251,-11,27270999,27271262 +6 + chr16 27271336 27271414 chr16,27271336,27271414,+,Charlie8,DNA,hAT-Charlie,36,101,-2327,27271301,27273741 +6 + chr16 27271414 27271559 chr16,27271414,27271559,+,AluJb,SINE,Alu,1,128,-184,27271414,27271743 +6 + chr16 27271559 27271586 chr16,27271559,27271586,+,(CA)n,Simple_repeat,Simple_repeat,1,27,0,27271559,27271586 +6 + chr16 27271586 27271759 chr16,27271586,27271759,+,AluJb,SINE,Alu,129,299,-13,27271458,27271772 +6 + chr16 27271759 27271906 chr16,27271759,27271906,+,Charlie8,DNA,hAT-Charlie,102,245,-2183,27271658,27274089 +6 + chr16 27281536 27281635 chr16,27281531,27281671,+,MER5A1,DNA,hAT-Charlie,29,166,0,27281503,27281671 +3 + chr16 27284636 27284654 chr16,27284570,27284903,-,MLT1I,LTR,ERVL-MaLR,0,411,67,27284570,27284969 -5 - chr16 27286733 27286744 chr16,27286733,27286826,-,LTR47A,LTR,ERVL,-5,447,361,27286728,27287186 -4 - chr16 27288800 27288846 chr16,27288797,27288846,+,L1ME3G,LINE,L1,746,795,-129,27288052,27288975 +2 + chr16 27290415 27290492 chr16,27290415,27290765,-,MLT1L,LTR,ERVL-MaLR,-11,599,210,27290404,27290974 -5 - chr16 27313387 27313440 chr16,27313288,27313440,+,MIR,SINE,MIR,98,267,-1,27313191,27313441 -5 + chr16 27313781 27313907 chr16,27313781,27313907,+,G-rich,Low_complexity,Low_complexity,1,130,0,27313781,27313907 -6 + chr16 27447669 27447787 chr16,27447663,27447787,-,L2a,LINE,L2,0,3426,3266,27447663,27451052 +5 - chr16 27447964 27448002 chr16,27447964,27448002,-,MIR3,SINE,MIR,-56,152,112,27447908,27448113 +6 - chr16 27448172 27448480 chr16,27448172,27448480,+,AluSx1,SINE,Alu,1,310,-2,27448172,27448482 -6 + chr16 27449415 27449477 chr16,27449415,27449477,+,(GT)n,Simple_repeat,Simple_repeat,1,62,0,27449415,27449477 -6 + chr16 27452761 27452912 chr16,27452761,27452912,-,MIR3,SINE,MIR,-61,169,12,27452700,27452923 +6 - chr16 27453097 27453145 chr16,27453000,27453145,+,MLT1K,LTR,ERVL-MaLR,124,327,-268,27452877,27453413 -4 + chr16 27453168 27453270 chr16,27453168,27453270,+,MLT1K,LTR,ERVL-MaLR,395,515,-80,27452774,27453350 -6 + chr16 27453270 27453393 chr16,27453270,27453654,+,MLT1I,LTR,ERVL-MaLR,1,407,-4,27453270,27453658 -1 + chr16 27643199 27643280 chr16,27643191,27643280,+,MIR,SINE,MIR,38,137,-131,27643154,27643411 +1 + chr16 27643308 27643359 chr16,27643308,27643620,+,AluSx1,SINE,Alu,1,312,0,27643308,27643620 +4 + chr16 27644233 27644321 chr16,27644019,27644321,-,AluSz,SINE,Alu,-9,303,1,27644010,27644321 -2 - chr16 27644513 27644663 chr16,27644513,27644808,-,AluJo,SINE,Alu,-20,292,1,27644493,27644808 -5 - chr16 27681249 27681314 chr16,27681249,27681314,+,L2c,LINE,L2,3317,3387,0,27677933,27681314 -6 + chr16 27685266 27685383 chr16,27685104,27685419,+,AluSz6,SINE,Alu,1,309,-3,27685104,27685422 -3 + chr16 27687182 27687411 chr16,27687108,27687411,-,L1MEg,LINE,L1,-5803,507,227,27681305,27687637 -1 - chr16 27708466 27708671 chr16,27708466,27708671,-,MIR,SINE,MIR,-22,246,43,27708444,27708713 +6 - chr16 27709036 27709151 chr16,27709036,27709337,+,AluJb,SINE,Alu,1,299,-13,27709036,27709350 -2 + chr16 27718243 27718253 chr16,27718130,27718253,+,MIRb,SINE,MIR,58,177,-91,27718073,27718344 -4 + chr16 28284952 28285237 chr16,28284952,28285237,-,AluJb,SINE,Alu,-18,294,2,28284934,28285238 +6 - chr16 28285273 28285584 chr16,28285273,28285584,+,AluSx3,SINE,Alu,1,311,0,28285273,28285584 -6 + chr16 28285682 28285783 chr16,28285682,28285783,-,AluJo,SINE,Alu,-182,130,31,28285500,28285813 +6 - chr16 28286258 28286387 chr16,28286258,28286387,+,FLAM_A,SINE,Alu,1,131,-11,28286258,28286398 -6 + chr16 28286392 28286675 chr16,28286392,28286675,+,AluSx,SINE,Alu,1,290,-22,28286392,28286697 -6 + chr16 28286829 28287067 chr16,28286829,28287098,+,AluSq2,SINE,Alu,3,285,-28,28286827,28287126 -2 + chr16 28291960 28292015 chr16,28291960,28292015,+,(GGAT)n,Simple_repeat,Simple_repeat,1,55,0,28291960,28292015 -6 + chr16 28454141 28454275 chr16,28454129,28454275,-,AluJr,SINE,Alu,-174,138,1,28453955,28454275 +5 - chr16 28454340 28454511 chr16,28454340,28454515,-,L2b,LINE,L2,-209,3166,2974,28454131,28457488 +1 - chr16 28553719 28553741 chr16,28553719,28553741,+,(TTTA)n,Simple_repeat,Simple_repeat,1,22,0,28553719,28553741 -6 + chr16 28802743 28803012 chr16,28802578,28803053,+,LTR41B,LTR,ERVL,2,631,-127,28802577,28803180 +1 + chr16 28816136 28816280 chr16,28816102,28816280,-,AluJb,SINE,Alu,-2,310,134,28816100,28816413 -2 - chr16 28816319 28816644 chr16,28816319,28816644,-,L1MA3,LINE,L1,-224,6081,5754,28816095,28822397 -6 - chr16 28816652 28816956 chr16,28816652,28816956,-,AluSx1,SINE,Alu,-10,302,3,28816642,28816958 -6 - chr16 28816960 28817259 chr16,28816960,28817259,-,AluY,SINE,Alu,-13,298,1,28816947,28817259 -6 - chr16 28817319 28817614 chr16,28817319,28817614,-,AluSp,SINE,Alu,-15,298,3,28817304,28817616 -6 - chr16 28817623 28817779 chr16,28817623,28817779,-,L1MC4a,LINE,L1,0,8042,7902,28817623,28825680 -6 - chr16 28817779 28817817 chr16,28817779,28817817,+,(AT)n,Simple_repeat,Simple_repeat,1,38,0,28817779,28817817 +6 + chr16 28820669 28820758 chr16,28820669,28820968,+,AluSp,SINE,Alu,1,300,-13,28820669,28820981 -2 + chr16 28821908 28822033 chr16,28821908,28822040,-,FLAM_C,SINE,Alu,-11,132,1,28821897,28822040 +1 - chr16 28822935 28822959 chr16,28822935,28822959,+,(C)n,Simple_repeat,Simple_repeat,1,24,0,28822935,28822959 -6 + chr16 28823491 28823515 chr16,28823491,28823515,+,(CGC)n,Simple_repeat,Simple_repeat,1,24,0,28823491,28823515 -6 + chr16 28837188 28837200 chr16,28837188,28837221,+,A-rich,Low_complexity,Low_complexity,1,33,0,28837188,28837221 -1 + chr16 28862289 28862530 chr16,28862289,28862599,-,AluSx1,SINE,Alu,-7,305,1,28862282,28862599 +2 - chr16 28863162 28863230 chr16,28862926,28863230,-,AluSx,SINE,Alu,-10,302,1,28862916,28863230 +4 - chr16 28863249 28863276 chr16,28863249,28863276,+,(CCA)n,Simple_repeat,Simple_repeat,1,27,0,28863249,28863276 -6 + chr16 28863276 28863294 chr16,28863276,28863294,+,(CCCACC)n,Simple_repeat,Simple_repeat,2,46,0,28863275,28863294 -6 + chr16 28956687 28956708 chr16,28956589,28956708,-,FLAM_C,SINE,Alu,-10,133,11,28956579,28956718 +5 - chr16 28957008 28957021 chr16,28957008,28957021,+,(TTATT)n,Simple_repeat,Simple_repeat,1,15,0,28957008,28957021 -6 + chr16 28957021 28957074 chr16,28957021,28957332,-,AluSx1,SINE,Alu,0,312,1,28957021,28957332 +2 - chr16 28957602 28957659 chr16,28957360,28957659,+,AluJr,SINE,Alu,1,299,-13,28957360,28957672 -4 + chr16 28957659 28957777 chr16,28957659,28957777,-,AluJr,SINE,Alu,-194,118,1,28957465,28957777 +6 - chr16 28966416 28966464 chr16,28966361,28966464,+,FLAM_C,SINE,Alu,35,166,0,28966327,28966464 -4 + chr16 28966476 28966777 chr16,28966476,28966777,+,AluSq2,SINE,Alu,1,300,-13,28966476,28966790 -6 + chr16 28973962 28974039 chr16,28973907,28974039,+,MamRep1879,DNA,hAT-Tip100?,58,203,-13,28973850,28974052 -5 + chr16 28974278 28974328 chr16,28974278,28974328,+,(TCCA)n,Simple_repeat,Simple_repeat,1,51,0,28974278,28974328 -6 + chr16 28974341 28974376 chr16,28974341,28974376,+,(TCCA)n,Simple_repeat,Simple_repeat,1,35,0,28974341,28974376 -6 + chr16 28978474 28978728 chr16,28978408,28978728,+,L2-3_Crp,LINE,L2,704,1045,-1051,28977705,28979779 -4 + chr16 28985269 28985326 chr16,28985269,28985326,+,(CTGCCCC)n,Simple_repeat,Simple_repeat,1,59,0,28985269,28985326 +6 + chr16 28990437 28990536 chr16,28990437,28990536,+,(TG)n,Simple_repeat,Simple_repeat,1,101,0,28990437,28990536 +6 + chr16 28990437 28990536 chr16,28990437,28990536,+,(TG)n,Simple_repeat,Simple_repeat,1,101,0,28990437,28990536 -6 + chr16 28990682 28990759 chr16,28990682,28990759,+,MIR3,SINE,MIR,124,201,-7,28990559,28990766 +6 + chr16 28990682 28990759 chr16,28990682,28990759,+,MIR3,SINE,MIR,124,201,-7,28990559,28990766 -6 + chr16 29204633 29204963 chr16,29204193,29204963,-,L1MA9,LINE,L1,-1,6311,5506,29204192,29210468 -1 - chr16 29212059 29212087 chr16,29211782,29212087,-,AluSx,SINE,Alu,-10,302,1,29211772,29212087 -1 - chr16 29213220 29213627 chr16,29213220,29213627,+,MSTB1,LTR,ERVL-MaLR,1,419,-13,29213220,29213640 +6 + chr16 29213630 29213767 chr16,29213630,29213767,+,MER5A,DNA,hAT-Charlie,44,189,0,29213587,29213767 +6 + chr16 29213774 29213841 chr16,29213774,29213841,+,L1MB8,LINE,L1,6111,6178,0,29207664,29213841 +6 + chr16 29213847 29214130 chr16,29213847,29214130,+,L1ME1,LINE,L1,1916,2212,-4107,29211932,29218237 +6 + chr16 29216437 29216706 chr16,29215883,29217729,+,L1ME1,LINE,L1,4241,6194,-158,29211643,29217887 +5 + chr16 29217481 29217729 chr16,29215883,29217729,+,L1ME1,LINE,L1,4241,6194,-158,29211643,29217887 +5 + chr16 29217170 29217664 chr16,29215883,29217729,+,L1ME1,LINE,L1,4241,6194,-158,29211643,29217887 -5 + chr16 29217781 29217857 chr16,29217781,29217857,+,L1ME1,LINE,L1,6274,6350,-2,29211508,29217859 +6 + chr16 29225774 29225818 chr16,29225774,29225818,+,(CTTC)n,Simple_repeat,Simple_repeat,1,45,0,29225774,29225818 -6 + chr16 29226244 29226311 chr16,29225988,29226311,+,MLT1A,LTR,ERVL-MaLR,1,336,-38,29225988,29226349 -4 + chr16 29264339 29264479 chr16,29264339,29264630,-,L1MC1,LINE,L1,-311,6022,5713,29264028,29270342 +1 - chr16 29272760 29272772 chr16,29272760,29272809,+,(TTCA)n,Simple_repeat,Simple_repeat,1,50,0,29272760,29272809 +5 + chr16 29291580 29291678 chr16,29291580,29291678,+,MIRc,SINE,MIR,104,203,-65,29291477,29291743 +6 + chr16 29364970 29365002 chr16,29364970,29365002,+,(GAAGAT)n,Simple_repeat,Simple_repeat,1,32,0,29364970,29365002 +6 + chr16 29369535 29369815 chr16,29369503,29369815,-,AluSx,SINE,Alu,0,312,1,29369503,29369815 -2 - chr16 29369815 29369907 chr16,29369815,29369907,+,MLT1K,LTR,ERVL-MaLR,493,589,-6,29369323,29369913 +6 + chr16 29370140 29370272 chr16,29370140,29370272,+,AluJo,SINE,Alu,3,125,-187,29370138,29370459 +6 + chr16 29370272 29370565 chr16,29370272,29370565,-,AluSc,SINE,Alu,-17,292,1,29370255,29370565 -6 - chr16 29370565 29370619 chr16,29370565,29370619,+,AluJo,SINE,Alu,126,168,-144,29370440,29370763 +6 + chr16 29370635 29370713 chr16,29370635,29370713,-,MLT1K,LTR,ERVL-MaLR,-412,183,95,29370223,29370807 -6 - chr16 29370751 29370821 chr16,29370751,29370821,+,MLT1H,LTR,ERVL-MaLR,23,91,-458,29370729,29371279 +6 + chr16 29370844 29371143 chr16,29370844,29371143,-,AluSx1,SINE,Alu,-17,295,1,29370827,29371143 -6 - chr16 29371149 29371223 chr16,29371149,29371223,+,AluJo,SINE,Alu,64,136,-176,29371086,29371399 +6 + chr16 29371303 29371493 chr16,29371303,29371493,+,MLT1H,LTR,ERVL-MaLR,109,308,-234,29371195,29371727 +6 + chr16 29371501 29371847 chr16,29371501,29371847,-,MLT1J1,LTR,ERVL-MaLR,-2,446,30,29371499,29371876 -6 - chr16 29371853 29371923 chr16,29371853,29371923,+,GA-rich,Low_complexity,Low_complexity,1,75,0,29371853,29371923 +6 + chr16 29371949 29372070 chr16,29371949,29372070,+,AluJr,SINE,Alu,3,124,-188,29371947,29372258 +6 + chr16 29455716 29455791 chr16,29455716,29455791,+,(CCCGGCC)n,Simple_repeat,Simple_repeat,1,76,0,29455716,29455791 +6 + chr16 29456448 29456713 chr16,29456445,29456713,-,AluSz,SINE,Alu,-18,294,3,29456427,29456715 -1 - chr16 29456937 29457249 chr16,29456937,29457249,-,AluSx1,SINE,Alu,-2,310,1,29456935,29457249 -6 - chr16 29457456 29457533 chr16,29457456,29457533,+,MIR,SINE,MIR,93,172,-90,29457364,29457623 +6 + chr16 29457557 29457625 chr16,29457557,29457625,+,(TGCCTGC)n,Simple_repeat,Simple_repeat,1,72,0,29457557,29457625 +6 + chr16 29464656 29464961 chr16,29464656,29464961,+,AluJr,SINE,Alu,2,304,-8,29464655,29464969 +5 + chr16 29467297 29467396 chr16,29467297,29467396,+,L2a,LINE,L2,3073,3180,-246,29464225,29467642 +6 + chr16 29467406 29467565 chr16,29467406,29467565,+,AluJr,SINE,Alu,137,295,-17,29467270,29467582 +6 + chr16 29595281 29595316 chr16,29595281,29595316,+,GA-rich,Low_complexity,Low_complexity,1,35,0,29595281,29595316 -6 + chr16 29596004 29596137 chr16,29596004,29596313,+,AluSq2,SINE,Alu,1,309,-4,29596004,29596317 -1 + chr16 29745247 29745346 chr16,29745050,29745346,+,AluJb,SINE,Alu,1,297,-15,29745050,29745361 +1 + chr16 29746783 29746896 chr16,29746762,29746896,-,FLAM_C,SINE,Alu,-8,135,1,29746754,29746896 -2 - chr16 29747157 29747250 chr16,29747157,29747250,-,MIR3,SINE,MIR,-35,173,77,29747122,29747326 -6 - chr16 29747308 29747604 chr16,29747308,29747604,+,AluSx,SINE,Alu,1,307,-5,29747308,29747609 +6 + chr16 29747690 29748134 chr16,29747690,29748134,+,LTR8,LTR,ERV1,2,482,-209,29747689,29748343 +6 + chr16 29748137 29748184 chr16,29748137,29748184,+,AluY,SINE,Alu,28,74,-237,29748110,29748421 +6 + chr16 29748184 29748299 chr16,29748184,29749320,+,LTR12C,LTR,ERV1,3,1579,0,29748182,29749320 +5 + chr16 29804522 29804605 chr16,29804522,29804605,-,MIR,SINE,MIR,-30,238,145,29804492,29804749 +6 - chr16 29807231 29807278 chr16,29807051,29807278,+,(CGC)n,Simple_repeat,Simple_repeat,1,230,0,29807051,29807278 -4 + chr16 29807509 29807578 chr16,29807509,29807578,+,(GCG)n,Simple_repeat,Simple_repeat,1,71,0,29807509,29807578 -6 + chr16 29810098 29810149 chr16,29810098,29810149,+,(GGCAGC)n,Simple_repeat,Simple_repeat,1,51,0,29810098,29810149 -6 + chr16 29810588 29810615 chr16,29810588,29810615,+,(TCCTC)n,Simple_repeat,Simple_repeat,1,28,0,29810588,29810615 -6 + chr16 29810652 29810676 chr16,29810652,29810676,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,29810652,29810676 -6 + chr16 29818191 29818335 chr16,29818191,29818335,-,FLAM_C,SINE,Alu,-8,135,1,29818183,29818335 +6 - chr16 29818335 29818544 chr16,29818335,29818568,+,L2b,LINE,L2,2558,2824,-595,29815778,29819163 -2 + chr16 29819417 29819430 chr16,29819266,29819430,+,L2b,LINE,L2,2915,3167,-208,29816352,29819638 -5 + chr16 29819442 29819482 chr16,29819442,29819482,-,MER5B,DNA,hAT-Charlie,-108,70,32,29819334,29819513 +6 - chr16 29913144 29913233 chr16,29913121,29913233,-,AluJb,SINE,Alu,-8,304,190,29913113,29913422 +5 - chr16 29913244 29913430 chr16,29913244,29913430,+,L1M4,LINE,L1,4685,4873,-1273,29908560,29914703 -6 + chr16 29913457 29913830 chr16,29913457,29913830,-,MLT1F,LTR,ERVL-MaLR,0,548,166,29913457,29913995 +6 - chr16 29913830 29914129 chr16,29913830,29914129,-,AluSx,SINE,Alu,-13,299,1,29913817,29914129 +6 - chr16 29914129 29914153 chr16,29914129,29914153,-,MLT1F,LTR,ERVL-MaLR,-383,165,145,29913746,29914297 +6 - chr16 29914253 29914431 chr16,29914253,29914431,-,MLT1F-int,LTR,ERVL-MaLR,-6,1483,1299,29914247,29915729 +6 - chr16 29914431 29914732 chr16,29914431,29914732,-,AluSx,SINE,Alu,-8,304,1,29914423,29914732 +6 - chr16 29914732 29914860 chr16,29914732,29914860,-,MLT1F-int,LTR,ERVL-MaLR,-191,1298,1173,29914541,29916032 +6 - chr16 29914860 29914989 chr16,29914860,29914989,+,FLAM_A,SINE,Alu,1,129,-13,29914860,29915002 -6 + chr16 29914989 29915337 chr16,29914989,29915369,-,MLT1F-int,LTR,ERVL-MaLR,-317,1172,780,29914672,29916148 +1 - chr16 29919634 29919648 chr16,29919532,29919648,+,L1MC5,LINE,L1,8892,9003,-301,29910641,29919949 -5 + chr16 29919650 29919792 chr16,29919650,29919792,+,L1ME4a,LINE,L1,5840,5987,-137,29913811,29919929 -6 + chr16 29919988 29920040 chr16,29919988,29920040,-,MER105,DNA,hAT-Charlie,0,203,165,29919988,29920204 +6 - chr16 29920040 29920353 chr16,29920040,29920353,+,AluSz,SINE,Alu,1,312,0,29920040,29920353 -6 + chr16 29920353 29920468 chr16,29920353,29920468,-,MER105,DNA,hAT-Charlie,-39,164,43,29920314,29920510 +6 - chr16 29920519 29921375 chr16,29920519,29921375,+,L1ME5,LINE,L1,5261,6156,-38,29915259,29921413 -6 + chr16 29921455 29921562 chr16,29921455,29921562,+,MIRb,SINE,MIR,43,155,-113,29921413,29921675 -6 + chr16 29921696 29921905 chr16,29921696,29921983,+,AluSx1,SINE,Alu,10,297,-15,29921687,29921998 -1 + chr16 29926836 29926991 chr16,29926817,29926991,-,L2a,LINE,L2,-270,3156,2963,29926547,29929953 -1 - chr16 29927421 29927711 chr16,29927421,29927711,+,MER90a,LTR,ERV1,5,290,-324,29927417,29928035 +6 + chr16 29927711 29927931 chr16,29927711,29928020,-,AluSx1,SINE,Alu,-2,310,1,29927709,29928020 -4 - chr16 29928268 29928300 chr16,29928020,29928300,+,MER90a,LTR,ERV1,291,610,-4,29927730,29928304 +2 + chr16 29928508 29928793 chr16,29928508,29928793,-,AluSp,SINE,Alu,-25,288,1,29928483,29928793 -6 - chr16 29928796 29928933 chr16,29928796,29928964,-,AluJb,SINE,Alu,-3,309,146,29928793,29929109 -5 - chr16 30064327 30064383 chr16,30064327,30064383,+,G-rich,Low_complexity,Low_complexity,1,57,0,30064327,30064383 -6 + chr16 30096557 30096687 chr16,30096557,30096687,-,MIR,SINE,MIR,-70,192,56,30096487,30096742 -6 - chr16 30096875 30097207 chr16,30096875,30097207,+,LTR10B2,LTR,ERV1,187,503,0,30096689,30097207 +6 + chr16 30097208 30097419 chr16,30097208,30099040,+,HERVIP10B3-int,LTR,ERV1,1,1864,-5739,30097208,30104779 +4 + chr16 30103457 30103835 chr16,30102243,30103835,+,HERVIP10B3-int,LTR,ERV1,5996,7603,0,30096248,30103835 +2 + chr16 30103883 30104116 chr16,30103883,30104167,+,LTR10B2,LTR,ERV1,211,503,0,30103673,30104167 +5 + chr16 30107707 30107983 chr16,30107707,30107983,+,AluSx1,SINE,Alu,1,276,-36,30107707,30108019 +6 + chr16 30107986 30108017 chr16,30107986,30108017,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,30107986,30108017 +6 + chr16 30108029 30108058 chr16,30108029,30108058,+,(TG)n,Simple_repeat,Simple_repeat,1,29,0,30108029,30108058 +6 + chr16 30108058 30108176 chr16,30108058,30108190,-,MIR3,SINE,MIR,-92,176,31,30107966,30108220 -4 - chr16 30111040 30111157 chr16,30111040,30111157,+,L2a,LINE,L2,3291,3419,-7,30107750,30111164 +6 + chr16 30111650 30111952 chr16,30111650,30111952,+,AluSx,SINE,Alu,1,302,-10,30111650,30111962 +6 + chr16 30183645 30183689 chr16,30183645,30183689,+,(CTC)n,Simple_repeat,Simple_repeat,1,44,0,30183645,30183689 -6 + chr16 30206646 30206755 chr16,30206646,30206755,+,L2a,LINE,L2,3073,3189,-237,30203574,30206992 +6 + chr16 30206755 30206919 chr16,30206755,30206919,+,AluJr,SINE,Alu,137,300,-12,30206619,30206931 +6 + chr16 30357039 30357075 chr16,30357039,30357075,+,(TCCC)n,Simple_repeat,Simple_repeat,1,38,0,30357039,30357075 +6 + chr16 30379763 30379906 chr16,30379701,30379906,-,AluSx1,SINE,Alu,-107,205,1,30379594,30379906 +5 - chr16 30379928 30379973 chr16,30379928,30379973,+,(CATCTT)n,Simple_repeat,Simple_repeat,1,45,0,30379928,30379973 -6 + chr16 30380095 30380110 chr16,30380095,30380188,+,GA-rich,Low_complexity,Low_complexity,1,93,0,30380095,30380188 -1 + chr16 30430952 30431108 chr16,30430952,30431162,+,L1ME3G,LINE,L1,5624,5816,-307,30425329,30431469 +5 + chr16 30477270 30477374 chr16,30477270,30477568,+,AluJr,SINE,Alu,1,311,-1,30477270,30477569 -2 + chr16 30480717 30480989 chr16,30480717,30481008,+,AluJr,SINE,Alu,2,294,-18,30480716,30481026 -2 + chr16 30481221 30481346 chr16,30481195,30481370,+,AluSq,SINE,Alu,125,307,-6,30481071,30481376 -1 + chr16 30498766 30498918 chr16,30498616,30498918,+,AluJr,SINE,Alu,1,300,-12,30498616,30498930 -5 + chr16 30499510 30499554 chr16,30499510,30499629,+,MIR1_Amn,SINE,MIR,31,161,-69,30499480,30499698 -1 + chr16 30527309 30527343 chr16,30527309,30527343,+,(CTC)n,Simple_repeat,Simple_repeat,1,35,0,30527309,30527343 +6 + chr16 30528274 30528294 chr16,30528274,30528569,+,AluSg4,SINE,Alu,5,296,-14,30528270,30528583 +5 + chr16 30535226 30535480 chr16,30535226,30535680,-,MER4A1,LTR,ERV1,0,472,1,30535226,30535680 -4 - chr16 30536082 30536160 chr16,30536082,30536160,-,MER34D,LTR,ERV1,0,579,499,30536082,30536658 -6 - chr16 30536164 30536199 chr16,30536164,30536276,+,FLAM_C,SINE,Alu,20,133,-10,30536145,30536286 +5 + chr16 30536749 30537049 chr16,30536749,30537049,-,AluSp,SINE,Alu,-12,301,2,30536737,30537050 -6 - chr16 30581805 30582100 chr16,30581805,30582100,+,AluSg7,SINE,Alu,1,295,-14,30581805,30582114 +6 + chr16 30583710 30583860 chr16,30583710,30583860,+,FRAM,SINE,Alu,1,165,-11,30583710,30583871 +5 + chr16 30608300 30608571 chr16,30608270,30608571,-,AluSx1,SINE,Alu,-4,308,11,30608266,30608581 -2 - chr16 30608579 30608593 chr16,30608579,30608717,-,MER5A,DNA,hAT-Charlie,-4,185,43,30608575,30608759 -5 - chr16 30697876 30697931 chr16,30697876,30697933,+,MIR1_Amn,SINE,MIR,39,97,-133,30697838,30698066 -2 + chr16 30698184 30698212 chr16,30698184,30698212,+,(GTG)n,Simple_repeat,Simple_repeat,1,28,0,30698184,30698212 -6 + chr16 30698718 30698742 chr16,30698718,30698742,+,(GAGC)n,Simple_repeat,Simple_repeat,1,24,0,30698718,30698742 -6 + chr16 30773705 30773834 chr16,30773705,30773834,+,MIR,SINE,MIR,37,190,-72,30773669,30773906 -6 + chr16 30775720 30775772 chr16,30775720,30775772,+,(CTGGCG)n,Simple_repeat,Simple_repeat,1,54,0,30775720,30775772 -6 + chr16 30775914 30775965 chr16,30775914,30775965,+,G-rich,Low_complexity,Low_complexity,1,54,0,30775914,30775965 -6 + chr16 30821515 30821884 chr16,30821515,30821945,+,LTR3B,LTR,ERVK,1,432,-5,30821515,30821950 +5 + chr16 30875869 30876035 chr16,30875869,30876035,-,MIRc,SINE,MIR,-98,170,3,30875771,30876037 -1 - chr16 30875869 30876033 chr16,30875869,30876035,-,MIRc,SINE,MIR,-98,170,3,30875771,30876037 +1 - chr16 30894548 30894562 chr16,30894499,30894562,-,L2c,LINE,L2,0,3387,3327,30894499,30897888 -2 - chr16 30894573 30895183 chr16,30894573,30895183,+,L1ME3A,LINE,L1,5456,6103,-70,30889118,30895253 +5 + chr16 30894924 30895183 chr16,30894573,30895183,+,L1ME3A,LINE,L1,5456,6103,-70,30889118,30895253 -5 + chr16 30919319 30919600 chr16,30919297,30919600,-,AluSz,SINE,Alu,-9,303,1,30919288,30919600 +5 - chr16 30919600 30919612 chr16,30919600,30919612,+,(CTT)n,Simple_repeat,Simple_repeat,3,14,0,30919598,30919612 -6 + chr16 30919755 30919895 chr16,30919755,30919895,+,MIRc,SINE,MIR,14,174,-94,30919742,30919989 -6 + chr16 30919895 30920188 chr16,30919895,30920188,-,AluSx,SINE,Alu,-17,295,1,30919878,30920188 +6 - chr16 30920188 30920235 chr16,30920188,30920235,+,MIRc,SINE,MIR,175,227,-41,30920014,30920276 -6 + chr16 30920248 30920515 chr16,30920248,30920515,-,AluJr,SINE,Alu,-34,278,1,30920214,30920515 +6 - chr16 30920522 30920544 chr16,30920522,30920544,+,(TGAT)n,Simple_repeat,Simple_repeat,1,22,0,30920522,30920544 -6 + chr16 30920545 30920808 chr16,30920545,30920808,-,AluSg,SINE,Alu,-27,283,23,30920518,30920830 +6 - chr16 30920843 30920875 chr16,30920843,30920875,+,A-rich,Low_complexity,Low_complexity,1,33,0,30920843,30920875 -6 + chr16 30921290 30921591 chr16,30921290,30921591,+,AluJr,SINE,Alu,13,309,-3,30921278,30921594 -6 + chr16 30921895 30921941 chr16,30921895,30921941,-,MIR3,SINE,MIR,0,208,163,30921895,30922103 +6 - chr16 30921951 30922100 chr16,30921951,30922100,-,MIRb,SINE,MIR,-30,238,96,30921921,30922195 +6 - chr16 30954228 30954319 chr16,30954228,30954488,-,AluJb,SINE,Alu,-15,297,27,30954213,30954514 -5 - chr16 30956200 30956277 chr16,30956100,30956277,-,MIR,SINE,MIR,-14,248,61,30956086,30956337 -2 - chr16 30956923 30957044 chr16,30956923,30957044,+,MIR1_Amn,SINE,MIR,31,153,-77,30956893,30957121 -6 + chr16 30985332 30985399 chr16,30985332,30985399,+,(TCCC)n,Simple_repeat,Simple_repeat,1,67,0,30985332,30985399 -6 + chr16 30985992 30986035 chr16,30985992,30986035,+,(GCCTCTG)n,Simple_repeat,Simple_repeat,1,47,0,30985992,30986035 -6 + chr16 30987300 30987451 chr16,30987300,30987451,+,FRAM,SINE,Alu,1,151,-25,30987300,30987476 -6 + chr16 31049513 31049700 chr16,31049373,31049700,+,MLT1I-int,LTR,ERVL-MaLR,1100,1387,0,31048274,31049700 +2 + chr16 31049743 31049868 chr16,31049743,31050061,+,AluJr,SINE,Alu,7,307,-5,31049737,31050066 +5 + chr16 31056460 31056510 chr16,31056169,31056510,-,AluSc,SINE,Alu,0,309,1,31056169,31056510 -1 - chr16 31056514 31056725 chr16,31056514,31056778,-,AluSz,SINE,Alu,-13,299,36,31056501,31056813 -4 - chr16 31059477 31059491 chr16,31059461,31059491,+,(TTAT)n,Simple_repeat,Simple_repeat,1,30,0,31059461,31059491 +1 + chr16 31059491 31059776 chr16,31059491,31059776,-,AluSx1,SINE,Alu,-27,285,3,31059464,31059778 -6 - chr16 31059776 31060020 chr16,31059776,31060020,-,L1M5,LINE,L1,-1590,4556,4315,31058186,31064334 -6 - chr16 31060057 31060149 chr16,31060057,31060149,+,MER103C,DNA,hAT-Charlie,59,160,-137,31059999,31060286 +6 + chr16 31060150 31060441 chr16,31060150,31060441,-,AluSx,SINE,Alu,-13,299,9,31060137,31060449 -6 - chr16 31062498 31062793 chr16,31062498,31062793,+,AluY,SINE,Alu,1,311,0,31062498,31062793 +5 + chr16 31065571 31065582 chr16,31065571,31065874,+,AluY,SINE,Alu,1,302,-9,31065571,31065883 +4 + chr16 31068831 31068909 chr16,31068606,31068909,-,AluJb,SINE,Alu,-12,300,1,31068594,31068909 -2 - chr16 31068929 31069129 chr16,31068929,31069129,-,MIRc,SINE,MIR,-55,213,12,31068874,31069140 -6 - chr16 31069195 31069246 chr16,31069195,31069268,+,AluSz,SINE,Alu,54,126,-186,31069142,31069454 +5 + chr16 31093727 31094003 chr16,31093699,31094003,-,AluSx1,SINE,Alu,0,312,1,31093699,31094003 -1 - chr16 31095049 31095354 chr16,31095049,31095354,+,AluSx,SINE,Alu,1,305,-7,31095049,31095361 +6 + chr16 31095736 31095944 chr16,31095736,31096063,+,L2,LINE,L2,1680,2032,-1387,31094057,31097450 +5 + chr16 31118415 31118576 chr16,31118415,31118797,+,L2c,LINE,L2,3007,3368,-7,31115409,31118804 +5 + chr16 31118704 31118747 chr16,31118415,31118797,+,L2c,LINE,L2,3007,3368,-7,31115409,31118804 +5 + chr16 31122468 31122598 chr16,31122468,31122598,+,MER3,DNA,hAT-Charlie,6,134,-75,31122463,31122673 +4 + chr16 31123673 31123804 chr16,31123512,31123804,-,AluSz6,SINE,Alu,-18,294,8,31123494,31123811 -1 - chr16 31123804 31123867 chr16,31123804,31123867,+,MER3,DNA,hAT-Charlie,153,209,0,31123652,31123867 +6 + chr16 31123824 31123883 chr16,31123824,31123883,-,MER3,DNA,hAT-Charlie,-119,90,33,31123705,31123915 -6 - chr16 31182713 31182839 chr16,31182713,31183004,-,AluSx1,SINE,Alu,-9,303,5,31182704,31183008 +2 - chr16 31183152 31183285 chr16,31183119,31183297,+,FAM,SINE,Alu,4,185,0,31183116,31183297 -1 + chr16 31196653 31196952 chr16,31196653,31196952,+,AluSx3,SINE,Alu,2,305,-6,31196652,31196958 +6 + chr16 31202706 31202740 chr16,31202706,31202740,+,(GCC)n,Simple_repeat,Simple_repeat,1,35,0,31202706,31202740 +6 + chr16 31203236 31203280 chr16,31203236,31203280,+,MIRc,SINE,MIR,110,153,-115,31203127,31203395 +6 + chr16 31203405 31203452 chr16,31203405,31203480,+,MIRb,SINE,MIR,2,77,-191,31203404,31203671 +5 + chr16 31225967 31226102 chr16,31225967,31226102,-,AluJr,SINE,Alu,-179,133,1,31225788,31226102 -6 - chr16 31226102 31226143 chr16,31226102,31226143,-,MER5A,DNA,hAT-Charlie,-113,76,37,31225989,31226179 -6 - chr16 31226326 31226444 chr16,31226326,31226444,+,AluJr,SINE,Alu,16,133,-179,31226311,31226623 +6 + chr16 31402610 31402868 chr16,31402610,31402905,-,AluJo,SINE,Alu,-20,292,1,31402590,31402905 -4 - chr16 31403237 31403417 chr16,31403191,31403417,+,AluJo,SINE,Alu,1,218,-94,31403191,31403511 +2 + chr16 31403914 31404040 chr16,31403914,31404040,+,MIRb,SINE,MIR,19,156,-112,31403896,31404152 +6 + chr16 31404185 31404222 chr16,31404185,31404222,+,(CTCACCC)n,Simple_repeat,Simple_repeat,1,38,0,31404185,31404222 +6 + chr16 31428566 31428646 chr16,31428566,31428650,+,L2c,LINE,L2,3303,3386,-1,31425264,31428651 +5 + chr16 31449535 31449627 chr16,31449420,31449627,+,L1MB8,LINE,L1,5790,6000,-178,31443631,31449805 -5 + chr16 31449627 31449709 chr16,31449627,31449709,+,MLT1A,LTR,ERVL-MaLR,1,78,-296,31449627,31450005 -6 + chr16 31449709 31449773 chr16,31449709,31450018,+,AluSq2,SINE,Alu,1,307,-6,31449709,31450024 -2 + chr16 31456834 31456877 chr16,31456834,31456877,+,G-rich,Low_complexity,Low_complexity,1,44,0,31456834,31456877 -6 + chr16 31457304 31457455 chr16,31457304,31457455,-,L3,LINE,CR1,-223,3876,3717,31457081,31461171 +6 - chr16 31457463 31457757 chr16,31457463,31457757,-,AluSz,SINE,Alu,-11,301,1,31457452,31457757 +6 - chr16 31458759 31458787 chr16,31458759,31458787,+,(CCCGC)n,Simple_repeat,Simple_repeat,1,28,0,31458759,31458787 -6 + chr16 31470204 31470375 chr16,31470061,31470375,-,AluSx1,SINE,Alu,-1,311,1,31470060,31470375 +5 - chr16 31470375 31470390 chr16,31470375,31470390,-,L1MB8,LINE,L1,-688,5490,5490,31469687,31475879 +6 - chr16 31470390 31470684 chr16,31470390,31470684,-,AluSx1,SINE,Alu,-21,291,1,31470369,31470684 +6 - chr16 31470684 31470851 chr16,31470684,31470851,-,L1MB8,LINE,L1,-688,5490,5323,31469996,31476173 +6 - chr16 31470851 31471152 chr16,31470851,31471152,-,AluSx1,SINE,Alu,-2,310,4,31470849,31471155 +6 - chr16 31471158 31471211 chr16,31471158,31471211,-,MER5B,DNA,hAT-Charlie,-123,55,3,31471035,31471213 +6 - chr16 31508624 31508714 chr16,31508624,31508714,+,MIRc,SINE,MIR,53,139,-129,31508572,31508843 +6 + chr16 31508717 31508810 chr16,31508717,31508810,+,L2c,LINE,L2,3298,3387,0,31505420,31508810 +6 + chr16 31546951 31547057 chr16,31546951,31547057,-,OldhAT1,DNA,hAT-Ac,-586,2262,2152,31546365,31549208 +6 - chr16 31547185 31547237 chr16,31547185,31547260,-,L3,LINE,CR1,-414,3685,3613,31546771,31550872 +1 - chr16 31566922 31566948 chr16,31566922,31566948,+,(GTAT)n,Simple_repeat,Simple_repeat,1,26,0,31566922,31566948 -6 + chr16 31566963 31567000 chr16,31566963,31567121,-,AluJo,SINE,Alu,-14,298,137,31566949,31567257 +1 - chr16 31699878 31699954 chr16,31699878,31700180,+,MER33,DNA,hAT-Charlie,5,318,-6,31699874,31700186 -2 + chr16 31700109 31700180 chr16,31699878,31700180,+,MER33,DNA,hAT-Charlie,5,318,-6,31699874,31700186 -4 + chr16 31705122 31705153 chr16,31705122,31705153,+,(GT)n,Simple_repeat,Simple_repeat,1,32,0,31705122,31705153 +6 + chr16 31709181 31709231 chr16,31709181,31709231,+,G-rich,Low_complexity,Low_complexity,1,55,0,31709181,31709231 -6 + chr16 31788202 31789064 chr16,31784480,31789064,-,L1MA3,LINE,L1,0,7007,2472,31784480,31791535 -1 - chr16 31789067 31789187 chr16,31789067,31789187,-,L1MC5,LINE,L1,-24,9280,9149,31789043,31798335 -6 - chr16 31789319 31789626 chr16,31789319,31789626,+,AluSx,SINE,Alu,2,309,-3,31789318,31789629 +6 + chr16 31790028 31790197 chr16,31790028,31790197,+,L1ME3G,LINE,L1,6,177,-747,31790023,31790944 +6 + chr16 31790237 31790375 chr16,31790237,31790375,+,AluJo,SINE,Alu,135,276,-36,31790103,31790411 +6 + chr16 31790380 31790428 chr16,31790380,31790428,+,A-rich,Low_complexity,Low_complexity,1,48,0,31790380,31790428 +6 + chr16 32185624 32185651 chr16,32185354,32185651,+,AluSx1,SINE,Alu,1,298,-14,32185354,32185665 +1 + chr16 32185811 32186116 chr16,32185811,32186116,+,AluSg7,SINE,Alu,1,305,-4,32185811,32186120 +6 + chr16 32188389 32188417 chr16,32188389,32188465,+,L1MC5a,LINE,L1,2044,2120,-657,32186346,32189122 +4 + chr16 32193102 32193268 chr16,32193102,32193268,-,MER103C,DNA,hAT-Charlie,-42,255,74,32193060,32193341 -6 - chr16 32193324 32193530 chr16,32193324,32193698,-,L2,LINE,L2,-563,2856,2430,32192761,32196127 -5 - chr16 32265190 32265435 chr16,32265190,32265435,-,BSR/Beta,Satellite,Satellite,0,241,1,32265190,32265435 +6 - chr16 32265435 32265514 chr16,32265435,32265582,-,L1MC,LINE,L1,-1568,4578,4443,32263867,32270024 +1 - chr16 32455066 32455351 chr16,32455066,32455351,+,AluJr,SINE,Alu,3,286,-26,32455064,32455377 -6 + chr16 32455911 32456198 chr16,32455911,32456198,-,Tigger15a,DNA,TcMar-Tigger,-193,522,174,32455718,32456371 +6 - chr16 32456567 32456855 chr16,32456567,32456855,-,AluJb,SINE,Alu,-21,291,6,32456546,32456860 +6 - chr16 32457776 32457839 chr16,32457776,32457839,+,Charlie18a,DNA,hAT-Charlie,140,205,-137,32457637,32457976 -6 + chr16 32458336 32458413 chr16,32458336,32458413,+,MIR,SINE,MIR,187,262,0,32458150,32458413 -6 + chr16 32458633 32458754 chr16,32458633,32458754,-,FLAM_A,SINE,Alu,-26,116,1,32458607,32458754 +6 - chr16 32649277 32649328 chr16,32649277,32649465,+,MER30B,DNA,hAT-Charlie,1,190,0,32649277,32649465 +4 + chr16 32649755 32649849 chr16,32649574,32649849,-,AluJr,SINE,Alu,-2,310,1,32649572,32649849 -2 - chr16 32650323 32650389 chr16,32650323,32650389,+,MIR3,SINE,MIR,95,161,-47,32650229,32650436 +6 + chr16 32663581 32663803 chr16,32662473,32663803,+,L1MB4,LINE,L1,1,787,-5820,32662473,32669623 +2 + chr16 32663856 32664003 chr16,32663856,32664003,+,L1MC,LINE,L1,4443,4578,-1568,32659414,32665571 +5 + chr16 32664003 32664248 chr16,32664003,32664248,+,BSR/Beta,Satellite,Satellite,1,239,0,32664003,32664248 +6 + chr16 32736170 32736336 chr16,32736170,32736336,+,MER103C,DNA,hAT-Charlie,74,255,-42,32736097,32736378 -6 + chr16 32741010 32741037 chr16,32740961,32741037,-,L1MC5a,LINE,L1,-657,2120,2044,32740304,32743080 +4 - chr16 32782352 32782678 chr16,32782352,32782678,+,LTR49,LTR,ERV1,1,338,-257,32782352,32782935 +6 + chr16 32782687 32782894 chr16,32782687,32782894,+,LTR29,LTR,ERV1,413,648,-5,32782275,32782899 +6 + chr16 32783083 32783514 chr16,32783083,32783514,+,LTR56,LTR,ERV1,1,445,0,32783083,32783514 +6 + chr16 32783654 32783837 chr16,32783654,32783837,-,MER20,DNA,hAT-Charlie,-3,216,10,32783651,32783846 -6 - chr16 32783894 32784072 chr16,32783894,32784072,-,L1MEb,LINE,L1,-3269,3050,2873,32780625,32786944 -6 - chr16 32787121 32787252 chr16,32787121,32787252,+,MSTB1,LTR,ERVL-MaLR,1,135,-297,32787121,32787549 +6 + chr16 32787334 32787379 chr16,32787334,32787669,-,L1MEb,LINE,L1,-4983,1326,974,32782351,32788642 -5 - chr16 32787962 32787998 chr16,32787686,32787998,-,L1MEb,LINE,L1,-5500,900,587,32782186,32788584 -1 - chr16 32788139 32788358 chr16,32788139,32788358,-,L1MB3,LINE,L1,-1,6182,5964,32788138,32794321 -6 - chr16 32809614 32809665 chr16,32809614,32809808,+,MER30B,DNA,hAT-Charlie,1,190,0,32809614,32809808 +4 + chr16 32810673 32810739 chr16,32810673,32810739,+,MIR3,SINE,MIR,95,161,-47,32810579,32810786 +6 + chr16 32824470 32824598 chr16,32824470,32824598,+,FLAM_C,SINE,Alu,11,135,-8,32824460,32824606 +6 + chr16 32824598 32824645 chr16,32824598,32825256,-,L1PA2,LINE,L1,-627,5528,4871,32823971,32830126 -5 - chr16 32885194 32885228 chr16,32885161,32885228,+,G-rich,Low_complexity,Low_complexity,1,67,0,32885161,32885228 +1 + chr16 32887764 32887856 chr16,32887764,32887856,+,L1MCa,LINE,L1,573,645,-6106,32887192,32893962 +6 + chr16 32996448 32996762 chr16,32996448,32996762,+,MER65A,LTR,ERV1,1,318,-127,32996448,32996889 +6 + chr16 33043609 33043948 chr16,33043555,33043948,+,MER54A,LTR,ERVL,490,901,0,33043066,33043948 -5 + chr16 33046529 33046577 chr16,33045918,33046577,+,L1PA2,LINE,L1,4871,5530,-625,33041048,33047202 -5 + chr16 33046577 33046704 chr16,33046577,33046704,-,FLAM_C,SINE,Alu,-8,135,11,33046569,33046714 +6 - chr16 33060387 33060453 chr16,33060387,33060453,-,MIR3,SINE,MIR,-47,161,95,33060340,33060547 +6 - chr16 33061457 33061507 chr16,33061312,33061507,-,MER30B,DNA,hAT-Charlie,0,190,1,33061312,33061507 +4 - chr16 33129372 33129400 chr16,33129372,33129448,+,L1MC5a,LINE,L1,2044,2120,-657,33127329,33130105 +4 + chr16 33134071 33134237 chr16,33134071,33134237,-,MER103C,DNA,hAT-Charlie,-42,255,74,33134029,33134310 -6 - chr16 33134293 33134499 chr16,33134293,33134667,-,L2,LINE,L2,-563,2856,2430,33133730,33137096 -5 - chr16 33206138 33206383 chr16,33206138,33206383,-,BSR/Beta,Satellite,Satellite,0,241,1,33206138,33206383 +6 - chr16 33206383 33206530 chr16,33206383,33206530,-,L1MC,LINE,L1,-1568,4578,4443,33204815,33210972 +5 - chr16 33206583 33206806 chr16,33206583,33207913,-,L1MB4,LINE,L1,-5820,787,1,33200763,33207913 +2 - chr16 33330094 33330160 chr16,33330094,33330160,-,MIR3,SINE,MIR,-47,161,95,33330047,33330254 +6 - chr16 33372757 33372915 chr16,33372757,33373002,-,BSR/Beta,Satellite,Satellite,0,241,1,33372757,33373002 +1 - chr16 33533926 33534163 chr16,33533926,33534235,-,AluSq2,SINE,Alu,-9,304,1,33533917,33534235 +2 - chr16 33534765 33534901 chr16,33534607,33534901,+,AluSx,SINE,Alu,1,294,-18,33534607,33534919 -4 + chr16 33541842 33541938 chr16,33541810,33541938,-,AluJr,SINE,Alu,-181,131,1,33541629,33541938 +5 - chr16 33541938 33541995 chr16,33541938,33541995,+,(TATTTA)n,Simple_repeat,Simple_repeat,2,56,0,33541937,33541995 -6 + chr16 33544069 33544130 chr16,33544069,33544130,+,(GCCCTG)n,Simple_repeat,Simple_repeat,1,65,0,33544069,33544130 -6 + chr16 33544196 33544315 chr16,33544196,33544315,-,AluSz,SINE,Alu,-179,133,17,33544017,33544331 +6 - chr16 33544317 33544499 chr16,33544317,33544499,+,MIR,SINE,MIR,92,262,0,33544226,33544499 -6 + chr16 33544632 33544763 chr16,33544632,33544763,+,(GCCCTG)n,Simple_repeat,Simple_repeat,1,137,0,33544632,33544763 -6 + chr16 33544783 33545812 chr16,33544783,33546127,+,G-rich,Low_complexity,Low_complexity,1,1424,0,33544783,33546127 -1 + chr16 33548297 33548307 chr16,33546178,33548307,+,G-rich,Low_complexity,Low_complexity,1425,3685,0,33544754,33548307 -5 + chr16 33548349 33548559 chr16,33548349,33548564,-,REP522,Satellite,telo,-545,247,1,33547804,33548564 +2 - chr16 33549423 33549580 chr16,33549107,33549580,-,REP522,Satellite,telo,-148,1669,1155,33548959,33550734 +4 - chr16 33857935 33857952 chr16,33857638,33857952,-,MER65A,LTR,ERV1,-127,318,1,33857511,33857952 +5 - chr16 33973683 33973775 chr16,33973683,33973775,-,L1MCa,LINE,L1,-6106,645,573,33967577,33974347 +6 - chr16 33975071 33975117 chr16,33975071,33975117,+,G-rich,Low_complexity,Low_complexity,1,46,0,33975071,33975117 -1 + chr16 33976311 33976346 chr16,33976311,33976379,+,(CCCCCGG)n,Simple_repeat,Simple_repeat,1,68,0,33976311,33976379 -1 + chr16 34158585 34158613 chr16,34158523,34158613,-,AluSx3,SINE,Alu,-23,288,199,34158500,34158811 +5 - chr16 34941977 34942411 chr16,34941674,34942411,+,GA-rich,Low_complexity,Low_complexity,1,750,0,34941674,34942411 +1 + chr16 34942507 34942895 chr16,34942507,34942895,-,L1MCa,LINE,L1,-3510,3431,3035,34938997,34945929 -6 - chr16 34942932 34943100 chr16,34942932,34943100,-,L1MCa,LINE,L1,-5101,2027,1851,34937831,34944950 -6 - chr16 34943333 34943627 chr16,34943333,34943627,-,MLT1A0,LTR,ERVL-MaLR,0,365,73,34943333,34943699 -6 - chr16 34943697 34943880 chr16,34943697,34943880,-,L1MCa,LINE,L1,-6035,388,181,34937662,34944060 -5 - chr16 34979741 34979844 chr16,34979572,34980201,-,SST1,Satellite,centr,0,1563,912,34979572,34981112 +1 - chr16 35143722 35143963 chr16,35143696,35144184,+,SST1,Satellite,centr,1053,1553,-10,35142644,35144194 +1 + chr16 35153436 35154366 chr16,35153436,35154456,+,LTR5A,LTR,ERVK,1,1033,0,35153436,35154456 +5 + chr16 35195630 35195661 chr16,35195630,35195673,+,(CCT)n,Simple_repeat,Simple_repeat,1,44,0,35195630,35195673 -1 + chr16 35253637 35253649 chr16,35253637,35253850,+,AluY,SINE,Alu,1,213,-98,35253637,35253948 +5 + chr16 35363412 35363528 chr16,35363256,35365075,-,BSR/Beta,Satellite,Satellite,-21,1810,1,35363235,35365075 -1 - chr16 35363531 35363830 chr16,35363256,35365075,-,BSR/Beta,Satellite,Satellite,-21,1810,1,35363235,35365075 -1 - chr16 35376506 35376537 chr16,35375934,35376537,+,L2b,LINE,L2,2476,3137,-238,35373459,35376775 +2 + chr16 35376547 35376649 chr16,35376547,35376688,+,MLT1B,LTR,ERVL-MaLR,1,123,-267,35376547,35376955 +4 + chr16 35378572 35378615 chr16,35378246,35378615,+,THE1B,LTR,ERVL-MaLR,1,364,0,35378246,35378615 +2 + chr16 35381604 35381762 chr16,35381604,35381762,-,L1P3,LINE,L1,-1502,4644,4477,35380102,35386238 -6 - chr16 35381842 35381889 chr16,35381842,35381889,-,MER57F,LTR,ERV1,0,435,394,35381842,35382282 -6 - chr16 35381889 35382177 chr16,35381889,35382177,+,AluJb,SINE,Alu,1,287,-25,35381889,35382202 +6 + chr16 35382177 35382261 chr16,35382177,35382555,-,MER57F,LTR,ERV1,-42,393,4,35382135,35382558 -5 - chr16 35382424 35382466 chr16,35382177,35382555,-,MER57F,LTR,ERV1,-42,393,4,35382135,35382558 -5 - chr16 35382469 35382555 chr16,35382177,35382555,-,MER57F,LTR,ERV1,-42,393,4,35382135,35382558 -5 - chr16 35382711 35382837 chr16,35382669,35382837,+,Tigger1,DNA,TcMar-Tigger,1,173,-2245,35382669,35385082 +2 + chr16 35382817 35382855 chr16,35382817,35383030,+,Tigger1,DNA,TcMar-Tigger,2202,2418,0,35380616,35383030 +4 + chr16 35390076 35390584 chr16,35390076,35390612,+,L1M4,LINE,L1,3836,4426,-1720,35386241,35392332 +5 + chr16 35494045 35494197 chr16,35494045,35494229,+,AluJb,SINE,Alu,129,311,-1,35493917,35494230 -2 + chr16 35496377 35496457 chr16,35495634,35496738,+,BSR/Beta,Satellite,Satellite,1,1104,-1,35495634,35496739 -1 + chr16 35640044 35640271 chr16,35640044,35640271,+,MIR,SINE,MIR,13,241,-21,35640032,35640292 +6 + chr16 35743268 35743402 chr16,35739756,35745299,-,HERVH-int,LTR,ERV1,-2198,5515,1,35737558,35745299 -1 - chr16 35745699 35745766 chr16,35745300,35745766,-,LTR7C,LTR,ERV1,-1,470,1,35745299,35745766 -2 - chr16 35745769 35745832 chr16,35745769,35745847,+,5S,rRNA,rRNA,44,121,0,35745726,35745847 +4 + chr16 35746552 35746646 chr16,35746543,35746646,+,5S,rRNA,rRNA,8,121,0,35746536,35746646 +1 + chr16 35748357 35748395 chr16,35748320,35748395,+,5S,rRNA,rRNA,44,121,0,35748277,35748395 +1 + chr16 35748803 35748837 chr16,35748803,35748907,+,5S,rRNA,rRNA,8,121,0,35748796,35748907 +4 + chr16 35755515 35756515 chr16,35755515,35763545,-,ALR/Alpha,Satellite,centr,-49,8050,1,35755466,35763545 -5 - chr16 35785569 35786195 chr16,35784918,35786195,-,ALR/Alpha,Satellite,centr,-35,1288,1,35784883,35786195 +5 - chr16 35786547 35786887 chr16,35786547,35787075,-,SST1,Satellite,centr,-964,599,63,35785583,35787137 +1 - chr16 35903117 35903558 chr16,35903114,35903558,-,HERVH48-int,LTR,ERV1,-467,6187,5794,35902647,35909351 -1 - chr16 35904669 35904916 chr16,35904669,35910398,-,HERVH48-int,LTR,ERV1,-831,5823,2,35903838,35910399 -5 - chr16 46622861 46622879 chr16,46622860,46622879,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,46622860,46622879 -5 + chr16 46623228 46623284 chr16,46623228,46623284,+,(CTGCCCC)n,Simple_repeat,Simple_repeat,1,58,0,46623228,46623284 -6 + chr16 46660820 46660842 chr16,46660820,46660842,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,46660820,46660842 -6 + chr16 46660863 46660953 chr16,46660863,46661164,+,AluSx1,SINE,Alu,1,304,-8,46660863,46661172 -2 + chr16 46673836 46673927 chr16,46673836,46674057,+,MER30,DNA,hAT-Charlie,1,230,0,46673836,46674057 -1 + chr16 46703369 46703455 chr16,46702940,46703455,-,L1ME4a,LINE,L1,-23,6101,5586,46702917,46709040 +5 - chr16 46703820 46703942 chr16,46703820,46703942,+,MER3,DNA,hAT-Charlie,41,162,-47,46703780,46703989 -6 + chr16 46703946 46704025 chr16,46703946,46704087,+,Charlie5,DNA,hAT-Charlie,2235,2374,-250,46701712,46704337 -1 + chr16 46978605 46978983 chr16,46978584,46979271,+,MER21A,LTR,ERVL,187,870,-61,46978398,46979332 +5 + chr16 47004724 47004768 chr16,47004724,47005092,-,MLT1A1,LTR,ERVL-MaLR,0,408,26,47004724,47005117 -4 - chr16 47035048 47035338 chr16,47035048,47035338,+,AluJb,SINE,Alu,14,302,-10,47035035,47035348 +6 + chr16 47153735 47153796 chr16,47153735,47153938,-,MIRb,SINE,MIR,-42,226,17,47153693,47153954 -4 - chr16 47196311 47196357 chr16,47195955,47196357,-,L1MCa,LINE,L1,-4878,1873,1477,47191077,47197833 -1 - chr16 47196366 47196490 chr16,47196366,47196490,-,L1MCa,LINE,L1,-5309,736,620,47191057,47197109 -6 - chr16 47196490 47196674 chr16,47196490,47196674,+,MER4D,LTR,ERV1,1,188,-715,47196490,47197389 +6 + chr16 47196674 47196719 chr16,47196674,47196951,+,AluSz,SINE,Alu,1,304,-8,47196674,47196959 +4 + chr16 47202248 47202338 chr16,47202248,47202338,-,MER135,DNA,DNA,-59,169,76,47202189,47202413 -6 - chr16 47299447 47299663 chr16,47299233,47299663,-,L1PB4,LINE,L1,-5311,1542,1143,47293922,47300805 -1 - chr16 47299920 47299948 chr16,47299920,47300366,-,L1M2,LINE,L1,-6466,743,1,47293454,47300366 -4 - chr16 47317549 47317689 chr16,47317535,47317689,+,MER5A,DNA,hAT-Charlie,7,166,-23,47317529,47317712 +2 + chr16 47529207 47529241 chr16,47529207,47529331,+,AluJr,SINE,Alu,1,124,-188,47529207,47529519 +4 + chr16 47529476 47529644 chr16,47529345,47529644,-,AluSc,SINE,Alu,-9,300,1,47529336,47529644 -2 - chr16 47529668 47529833 chr16,47529668,47529833,-,MLT1J,LTR,ERVL-MaLR,-311,201,3,47529357,47529835 -6 - chr16 47529834 47529916 chr16,47529834,47530132,+,L1M5,LINE,L1,3793,4103,-2043,47526042,47532175 +5 + chr16 47724620 47724777 chr16,47724620,47724777,+,MamTip2,DNA,hAT-Tip100,19,194,-111,47724602,47724888 +6 + chr16 47814630 47814743 chr16,47814614,47814900,-,AluSz,SINE,Alu,-21,291,2,47814593,47814901 -3 - chr16 47849314 47849689 chr16,47849243,47849689,-,LTR32,LTR,ERVL,-11,446,3,47849232,47849691 +5 - chr16 47849884 47849948 chr16,47849884,47850116,+,MLT1I,LTR,ERVL-MaLR,179,409,-2,47849706,47850118 -2 + chr16 47859075 47859119 chr16,47859075,47859119,-,L2a,LINE,L2,-11,3415,3375,47859064,47862493 -6 - chr16 47859088 47859332 chr16,47859088,47859332,-,MIRb,SINE,MIR,-17,251,1,47859071,47859332 -6 - chr16 47859378 47859554 chr16,47859378,47859554,-,MIRb,SINE,MIR,-64,204,16,47859314,47859569 -6 - chr16 47859576 47859929 chr16,47859576,47859972,+,MLT2A1,LTR,ERVL,3,404,-40,47859574,47860012 +4 + chr16 47907789 47907953 chr16,47907772,47907953,-,L2a,LINE,L2,-1,3425,3248,47907771,47911200 -2 - chr16 47907964 47908431 chr16,47907964,47908768,-,L1ME2,LINE,L1,-4,6160,5335,47907960,47914102 -5 - chr16 48165693 48165786 chr16,48165391,48165786,+,L2b,LINE,L2,2976,3422,-4,48162416,48165790 -4 + chr16 48344632 48344931 chr16,48344632,48344931,+,AluJb,SINE,Alu,1,295,-17,48344632,48344948 -6 + chr16 48344940 48345248 chr16,48344940,48345248,+,AluSz,SINE,Alu,1,311,-1,48344940,48345249 -6 + chr16 48345762 48346058 chr16,48345762,48346072,+,AluSx,SINE,Alu,1,310,-2,48345762,48346074 -1 + chr16 48559661 48559702 chr16,48559471,48559884,+,MER57C2,LTR,ERV1,1,434,0,48559471,48559884 +1 + chr16 48587139 48587403 chr16,48586653,48588129,+,LTR37-int,LTR,ERV1,2375,3968,-1250,48584279,48589379 +5 + chr16 48620319 48620338 chr16,48620152,48620338,+,MLT1G3,LTR,ERVL-MaLR,112,282,-313,48620041,48620651 +1 + chr16 48638392 48638719 chr16,48638392,48638804,+,MLT1B,LTR,ERVL-MaLR,5,390,0,48638388,48638804 +5 + chr16 48640929 48640950 chr16,48640929,48640950,+,(TTA)n,Simple_repeat,Simple_repeat,1,21,0,48640929,48640950 +6 + chr16 48640950 48641052 chr16,48640950,48641765,-,L1MA8,LINE,L1,-6,6285,5455,48640944,48647219 -5 - chr16 48671861 48671933 chr16,48671771,48671933,-,MLT1J2,LTR,ERVL-MaLR,-6,442,275,48671765,48672207 -2 - chr16 48672013 48672033 chr16,48672013,48672080,+,L2c,LINE,L2,3268,3332,-55,48668746,48672135 +4 + chr16 48673313 48673478 chr16,48673313,48673523,-,MIRb,SINE,MIR,-19,249,18,48673294,48673540 -5 - chr16 48676394 48676497 chr16,48676260,48676497,+,Tigger1,DNA,TcMar-Tigger,1953,2183,-235,48674308,48676732 +2 + chr16 48676497 48676752 chr16,48676497,48676785,+,AluSq2,SINE,Alu,3,290,-23,48676495,48676808 +5 + chr16 48744247 48744304 chr16,48744166,48744304,+,MLT1J,LTR,ERVL-MaLR,1,142,-370,48744166,48744674 +2 + chr16 48744467 48744604 chr16,48744432,48744604,+,MLT1J,LTR,ERVL-MaLR,232,408,-104,48744201,48744708 +2 + chr16 49159508 49159527 chr16,49159369,49159527,-,MIRb,SINE,MIR,-107,161,6,49159262,49159532 -1 - chr16 49170552 49170732 chr16,49170186,49170732,-,MLT1K,LTR,ERVL-MaLR,0,595,1,49170186,49170732 -1 - chr16 49171038 49171105 chr16,49171038,49171105,+,L3,LINE,CR1,3865,3930,-169,49167174,49171274 +6 + chr16 49171234 49171593 chr16,49171234,49171593,-,LTR16,LTR,ERVL,-53,385,2,49171181,49171594 -6 - chr16 49289853 49289964 chr16,49289853,49289964,-,L2a,LINE,L2,-4,3422,3316,49289849,49293279 -6 - chr16 49294886 49295015 chr16,49294858,49295015,-,MIRb,SINE,MIR,-82,186,20,49294776,49295034 -1 - chr16 49295955 49296259 chr16,49295955,49296259,-,LTR16C,LTR,ERVL,0,489,171,49295955,49296429 -6 - chr16 49296572 49296736 chr16,49296572,49296772,+,hAT-N1_Mam,DNA,hAT-Tip100?,94,302,-38,49296479,49296810 +5 + chr16 49298263 49298571 chr16,49298263,49298571,-,AluSc8,SINE,Alu,0,311,1,49298263,49298571 -6 - chr16 49299170 49299592 chr16,49299170,49299592,-,MLT1N2,LTR,ERVL-MaLR,-2,560,100,49299168,49299691 -6 - chr16 49299643 49299762 chr16,49299643,49299926,+,AluJr,SINE,Alu,4,279,-33,49299640,49299959 +5 + chr16 49336683 49336766 chr16,49336671,49336766,-,MIRc,SINE,MIR,-144,124,23,49336527,49336788 -1 - chr16 49337167 49337198 chr16,49336972,49337198,-,L2a,LINE,L2,0,3426,3202,49336972,49340399 -1 - chr16 49337210 49337676 chr16,49337210,49337676,+,MLT1L,LTR,ERVL-MaLR,40,536,-74,49337171,49337750 +5 + chr16 49337750 49337828 chr16,49337750,49337828,+,L2a,LINE,L2,3345,3423,-3,49334406,49337831 +6 + chr16 49337835 49338166 chr16,49337835,49338166,-,LTR16A2,LTR,ERVL,-4,491,173,49337831,49338338 -6 - chr16 49341663 49342005 chr16,49341645,49342005,-,L2a,LINE,L2,-143,3283,2866,49341502,49344870 -1 - chr16 49342950 49343183 chr16,49342950,49343183,+,MIRb,SINE,MIR,2,230,-38,49342949,49343221 +6 + chr16 49343258 49343777 chr16,49343258,49343777,+,MLT1F,LTR,ERVL-MaLR,10,548,0,49343249,49343777 +6 + chr16 49343897 49343973 chr16,49343897,49343973,+,L2c,LINE,L2,3117,3202,-185,49340781,49344158 +6 + chr16 49344003 49344081 chr16,49344003,49344081,+,L4_A_Mam,LINE,RTE-X,4721,4799,-191,49339283,49344272 +6 + chr16 49344650 49344958 chr16,49344650,49344958,+,MamRep605,LTR?,LTR?,263,590,-259,49344388,49345217 +6 + chr16 49345190 49345303 chr16,49345190,49345303,+,Charlie19a,DNA,hAT-Charlie,34,147,-239,49345157,49345542 +6 + chr16 49345350 49345508 chr16,49345350,49345508,+,Charlie19a,DNA,hAT-Charlie,230,385,-1,49345121,49345509 +6 + chr16 49345519 49345565 chr16,49345519,49345565,-,MIR1_Amn,SINE,MIR,-73,157,116,49345446,49345680 -6 - chr16 49345821 49345992 chr16,49345821,49345992,-,MIRb,SINE,MIR,-73,195,9,49345748,49346000 -6 - chr16 49346365 49346657 chr16,49346365,49346657,-,MLT1J1,LTR,ERVL-MaLR,-26,418,129,49346339,49346785 -6 - chr16 49347073 49347608 chr16,49347073,49347608,-,MLT1K,LTR,ERVL-MaLR,-8,587,12,49347065,49347619 -6 - chr16 49347876 49347943 chr16,49347876,49347943,-,MamTip2,DNA,hAT-Tip100,-12,293,219,49347864,49348161 -6 - chr16 49348234 49348386 chr16,49348234,49348386,+,MER103C,DNA,hAT-Charlie,1,150,-147,49348234,49348533 +6 + chr16 49348686 49348886 chr16,49348686,49348886,+,MIRb,SINE,MIR,19,252,-16,49348668,49348902 +6 + chr16 49350179 49350237 chr16,49350179,49350237,+,(TC)n,Simple_repeat,Simple_repeat,1,62,0,49350179,49350237 +6 + chr16 49350239 49350554 chr16,49350239,49350593,+,MLT1B,LTR,ERVL-MaLR,1,384,-6,49350239,49350599 +5 + chr16 49456984 49457255 chr16,49456984,49457255,+,AluJo,SINE,Alu,42,309,-3,49456943,49457258 +6 + chr16 49466106 49466137 chr16,49466020,49466137,+,MIRb,SINE,MIR,63,174,-94,49465958,49466231 +1 + chr16 49466137 49466664 chr16,49466137,49466664,-,MER90,LTR,ERV1,-3,572,1,49466134,49466664 -6 - chr16 49466664 49466678 chr16,49466664,49466678,+,MIRb,SINE,MIR,175,188,-80,49466490,49466758 +6 + chr16 49466807 49466893 chr16,49466807,49466893,-,L2c,LINE,L2,-229,3158,3059,49466578,49469951 -6 - chr16 49467361 49467499 chr16,49467361,49467499,-,MIRb,SINE,MIR,-80,188,7,49467281,49467505 -6 - chr16 49467862 49467983 chr16,49467862,49467983,+,MIRb,SINE,MIR,35,173,-57,49467828,49468040 +6 + chr16 49468324 49468449 chr16,49468324,49468449,+,L2a,LINE,L2,3300,3426,0,49465025,49468449 +6 + chr16 49468605 49468723 chr16,49468605,49468723,-,MER102c,DNA,hAT-Charlie,-9,322,203,49468596,49468925 -6 - chr16 49468904 49468953 chr16,49468904,49468953,+,(TCCAGC)n,Simple_repeat,Simple_repeat,1,49,0,49468904,49468953 +6 + chr16 49469168 49469407 chr16,49469168,49469407,+,L2b,LINE,L2,3108,3368,-7,49466061,49469414 +6 + chr16 49469440 49469558 chr16,49469440,49469558,+,MIR,SINE,MIR,41,159,-103,49469400,49469661 +6 + chr16 49469558 49469841 chr16,49469558,49469841,+,AluSq2,SINE,Alu,1,283,-30,49469558,49469871 +6 + chr16 49469841 49469875 chr16,49469841,49469885,+,(AATA)n,Simple_repeat,Simple_repeat,1,45,0,49469841,49469885 +5 + chr16 49711273 49711525 chr16,49711194,49711525,+,L1ME3G,LINE,L1,363,720,-204,49710832,49711729 +1 + chr16 49711525 49711699 chr16,49711525,49711699,-,MER104,DNA,TcMar-Tc2,0,181,1,49711525,49711699 -6 - chr16 49711699 49711779 chr16,49711699,49711779,+,L1ME3G,LINE,L1,721,800,-124,49710979,49711903 +6 + chr16 49711826 49711914 chr16,49711826,49712144,+,AluJo,SINE,Alu,1,305,-7,49711826,49712151 +5 + chr16 49900344 49900460 chr16,49900344,49900460,-,Plat_L3,LINE,CR1,-123,3463,3343,49900221,49903802 -6 - chr16 49921492 49921526 chr16,49921492,49921526,-,MamRep1879,DNA,hAT-Tip100?,0,216,187,49921492,49921712 +6 - chr16 49921526 49921655 chr16,49921526,49921655,-,AluJo,SINE,Alu,-179,133,2,49921347,49921656 +6 - chr16 49921655 49921810 chr16,49921655,49921810,-,MamRep1879,DNA,hAT-Tip100?,-30,186,33,49921625,49921842 +6 - chr16 49922179 49922313 chr16,49922179,49922495,-,MamRep4096,DNA,hAT-Tip100,-56,370,28,49922123,49922522 +2 - chr16 49923885 49924154 chr16,49923885,49924329,-,MLT1K,LTR,ERVL-MaLR,-26,569,122,49923859,49924450 +1 - chr16 50064691 50064807 chr16,50064527,50064838,+,AluSz,SINE,Alu,3,306,-6,50064525,50064844 -3 + chr16 50066193 50066224 chr16,50066193,50066255,+,(GGC)n,Simple_repeat,Simple_repeat,1,64,0,50066193,50066255 -1 + chr16 50073743 50073779 chr16,50073743,50073779,+,(TTTAGTT)n,Simple_repeat,Simple_repeat,1,39,0,50073743,50073779 +6 + chr16 50074295 50074340 chr16,50074295,50074340,+,MER5C1,DNA,hAT-Charlie,47,95,-168,50074249,50074508 +6 + chr16 50074340 50074639 chr16,50074340,50074639,-,AluSz,SINE,Alu,-14,298,1,50074326,50074639 -6 - chr16 50074639 50074700 chr16,50074639,50074700,+,MER5C1,DNA,hAT-Charlie,96,159,-104,50074544,50074804 +6 + chr16 50074700 50074986 chr16,50074700,50074996,+,AluY,SINE,Alu,1,296,-15,50074700,50075011 +5 + chr16 50371159 50371412 chr16,50370973,50371412,+,MLT1F2,LTR,ERVL-MaLR,33,474,-86,50370941,50371498 +2 + chr16 50394935 50395053 chr16,50394911,50395053,+,MLT1K,LTR,ERVL-MaLR,438,593,-2,50394474,50395055 -4 + chr16 50551824 50551906 chr16,50551670,50551906,+,MER113A,DNA,hAT-Charlie,45,313,-1,50551626,50551907 -5 + chr16 50552185 50552264 chr16,50552185,50552264,-,MIRb,SINE,MIR,0,268,171,50552185,50552434 +6 - chr16 50555921 50555971 chr16,50555921,50555971,+,(CTCTCC)n,Simple_repeat,Simple_repeat,1,48,0,50555921,50555971 +6 + chr16 50556737 50556873 chr16,50556737,50556873,-,FLAM_C,SINE,Alu,-10,133,1,50556727,50556873 -6 - chr16 50556882 50557069 chr16,50556882,50557069,-,L1PA15,LINE,L1,-7,6158,5970,50556875,50563038 -6 - chr16 50557077 50557274 chr16,50557077,50557274,-,L2a,LINE,L2,-23,3403,3163,50557054,50560436 -6 - chr16 50557279 50557371 chr16,50557279,50557371,-,L2c,LINE,L2,-5,3370,3274,50557274,50560644 -6 - chr16 50557494 50557766 chr16,50557494,50557766,-,L1M5,LINE,L1,-2138,4008,3725,50555356,50561490 -6 - chr16 50557899 50558193 chr16,50557899,50558193,-,MER102c,DNA,hAT-Charlie,0,331,58,50557899,50558250 -6 - chr16 50558335 50558463 chr16,50558335,50558463,-,MIRb,SINE,MIR,-32,236,99,50558303,50558561 -6 - chr16 50558632 50558719 chr16,50558632,50558944,+,AluSq2,SINE,Alu,42,313,0,50558591,50558944 +5 + chr16 50606076 50606345 chr16,50606058,50606345,-,AluSx3,SINE,Alu,-13,298,2,50606045,50606346 +5 - chr16 50607376 50607413 chr16,50607376,50607413,+,(T)n,Simple_repeat,Simple_repeat,1,37,0,50607376,50607413 -6 + chr16 50607537 50607752 chr16,50607537,50607752,-,MER103C,DNA,hAT-Charlie,-1,296,67,50607536,50607818 +6 - chr16 50645809 50645854 chr16,50645803,50645854,+,A-rich,Low_complexity,Low_complexity,1,52,0,50645803,50645854 +1 + chr16 50646935 50647018 chr16,50646935,50647018,+,L2a,LINE,L2,3342,3426,0,50643594,50647018 +6 + chr16 50647185 50647304 chr16,50647185,50647304,+,MLT1L,LTR,ERVL-MaLR,143,259,-351,50647043,50647655 +6 + chr16 50647444 50647679 chr16,50647444,50647679,-,LTR16C,LTR,ERVL,-8,481,182,50647436,50647860 -6 - chr16 50647700 50647792 chr16,50647700,50647792,-,LTR16C,LTR,ERVL,-392,97,2,50647308,50647793 -6 - chr16 50648463 50648590 chr16,50648463,50648590,+,L2b,LINE,L2,1996,2126,-1293,50646468,50649883 +6 + chr16 50648602 50649061 chr16,50648602,50649061,+,MLT1J,LTR,ERVL-MaLR,14,508,-4,50648589,50649065 +6 + chr16 50649160 50649247 chr16,50649160,50649247,+,L1MD3,LINE,L1,7908,7995,0,50641253,50649247 +6 + chr16 50666492 50666639 chr16,50666492,50666639,+,L1ME4a,LINE,L1,5753,5906,-218,50660740,50666857 +6 + chr16 50666837 50667089 chr16,50666837,50667089,+,MLT1K,LTR,ERVL-MaLR,335,583,-12,50666503,50667101 +6 + chr16 50667318 50667618 chr16,50667318,50667618,+,L2b,LINE,L2,3024,3369,-6,50664295,50667624 +6 + chr16 50668230 50668595 chr16,50668230,50668595,+,MER113,DNA,hAT-Charlie,93,456,-65,50668138,50668660 +6 + chr16 50669042 50669182 chr16,50669042,50669182,+,MIR3,SINE,MIR,24,171,-37,50669019,50669219 +6 + chr16 50669184 50669593 chr16,50669184,50669593,-,MSTB,LTR,ERVL-MaLR,-1,425,1,50669183,50669593 -6 - chr16 50669661 50669886 chr16,50669661,50669886,+,MIRb,SINE,MIR,16,242,-26,50669646,50669912 +6 + chr16 50670307 50670436 chr16,50670307,50670436,-,MER5A1,DNA,hAT-Charlie,-4,162,51,50670303,50670486 -6 - chr16 50671148 50671174 chr16,50671113,50671174,+,Kanga1,DNA,TcMar-Tc2,13,75,-1670,50671101,50672844 +2 + chr16 50671244 50671518 chr16,50671244,50671518,-,L1MEd,LINE,L1,-6489,597,314,50664755,50671831 -6 - chr16 50671613 50671639 chr16,50671613,50672409,-,MamGypLTR3a,LTR,Gypsy,-3,978,36,50671610,50672444 -5 - chr16 50712903 50713146 chr16,50712903,50713146,-,LTR84a,LTR,ERVL,-72,685,440,50712831,50713585 -6 - chr16 50713545 50713589 chr16,50713545,50713978,-,LTR33,LTR,ERVL,0,515,2,50713545,50713979 -5 - chr16 50735713 50736099 chr16,50735407,50736099,-,L2b,LINE,L2,-418,3001,2247,50734989,50738345 +5 - chr16 50741030 50741064 chr16,50741030,50741064,+,(AC)n,Simple_repeat,Simple_repeat,1,34,0,50741030,50741064 -6 + chr16 50783967 50784012 chr16,50783967,50784012,+,(CTGTTGT)n,Simple_repeat,Simple_repeat,1,45,0,50783967,50784012 -6 + chr16 50803196 50803336 chr16,50803196,50803336,+,MER5B,DNA,hAT-Charlie,1,141,-37,50803196,50803373 -6 + chr16 50807418 50807452 chr16,50807331,50807452,+,MER5A,DNA,hAT-Charlie,78,189,0,50807254,50807452 +2 + chr16 50807543 50807591 chr16,50807543,50807591,+,MER31A,LTR,ERV1,353,400,-85,50807191,50807676 +6 + chr16 50856614 50857169 chr16,50856570,50857169,-,MLT1E2,LTR,ERVL-MaLR,-8,619,9,50856562,50857177 +5 - chr16 50857167 50857308 chr16,50857167,50857326,-,MLT1G3,LTR,ERVL-MaLR,-188,407,242,50856979,50857567 +2 - chr16 50879055 50879140 chr16,50879055,50879140,+,LTR16C,LTR,ERVL,230,326,-163,50878826,50879303 -6 + chr16 50880218 50880261 chr16,50880218,50880451,-,MER20,DNA,hAT-Charlie,0,219,1,50880218,50880451 -4 - chr16 50882551 50882616 chr16,50882551,50882616,+,MIRb,SINE,MIR,107,178,-90,50882445,50882706 +6 + chr16 50882634 50882709 chr16,50882634,50882709,-,MER113,DNA,hAT-Charlie,-3,518,443,50882631,50883151 -6 - chr16 50882709 50882996 chr16,50882709,50882996,-,AluJr,SINE,Alu,-14,298,5,50882695,50883000 -6 - chr16 50882996 50883048 chr16,50882996,50883048,-,MER113,DNA,hAT-Charlie,-79,442,383,50882917,50883430 -6 - chr16 50883234 50883297 chr16,50883234,50883297,+,MIRb,SINE,MIR,200,264,-4,50883035,50883301 +6 + chr16 50883428 50883905 chr16,50883428,50883905,+,MLT1H,LTR,ERVL-MaLR,2,539,-10,50883427,50883915 +6 + chr16 50884237 50884307 chr16,50884237,50884307,-,MIRc,SINE,MIR,-192,76,5,50884045,50884311 -6 - chr16 50884502 50884627 chr16,50884502,50884627,+,L2a,LINE,L2,2497,2617,-802,50882006,50885429 +6 + chr16 50893678 50893817 chr16,50893678,50893817,-,LTR78B,LTR,ERV1,-686,610,470,50892992,50894286 -6 - chr16 50900694 50901061 chr16,50900694,50901107,+,LTR16C,LTR,ERVL,51,489,0,50900644,50901107 +5 + chr16 51017758 51017830 chr16,51017640,51017830,+,MIRc,SINE,MIR,23,255,-7,51017618,51017837 +1 + chr16 51035232 51035450 chr16,51035232,51035480,-,MLT1H,LTR,ERVL-MaLR,-246,303,6,51034986,51035485 +2 - chr16 51035536 51035680 chr16,51035486,51035680,-,MIRb,SINE,MIR,-39,229,23,51035447,51035702 -2 - chr16 51038071 51038119 chr16,51037998,51038154,-,MIRb,SINE,MIR,-32,236,67,51037966,51038220 +3 - chr16 51054728 51055028 chr16,51054673,51055028,-,THE1B,LTR,ERVL-MaLR,0,364,2,51054673,51055029 +5 - chr16 51176066 51176121 chr16,51175740,51176121,+,MSTB,LTR,ERVL-MaLR,1,426,0,51175740,51176121 +1 + chr16 51176995 51177273 chr16,51176995,51177273,-,AluJr,SINE,Alu,-10,302,25,51176985,51177297 -6 - chr16 51177559 51177691 chr16,51177559,51177691,+,MIR,SINE,MIR,32,166,-96,51177528,51177787 +6 + chr16 51177742 51177899 chr16,51177742,51177899,+,MIRb,SINE,MIR,11,175,-87,51177732,51177986 +6 + chr16 51178009 51178062 chr16,51178009,51178062,+,AluYk11,SINE,Alu,2,54,-257,51178008,51178319 +6 + chr16 51178251 51178347 chr16,51178251,51178347,+,L2a,LINE,L2,3328,3426,0,51174924,51178347 +6 + chr16 51178486 51178667 chr16,51178486,51178667,+,MIR,SINE,MIR,24,202,-60,51178463,51178727 +6 + chr16 51354456 51354490 chr16,51354454,51354490,-,L2a,LINE,L2,0,3426,3391,51354454,51357880 +5 - chr16 51771570 51771613 chr16,51771570,51771613,-,Penelope1_Vert,LINE,Penelope,-61,1026,984,51771509,51772596 -6 - chr16 51773040 51773173 chr16,51773040,51773778,+,LTR1,LTR,ERV1,1,783,0,51773040,51773778 +5 + chr16 52083326 52083515 chr16,52083326,52083515,-,MER20,DNA,hAT-Charlie,0,219,24,52083326,52083538 +6 - chr16 52085309 52085406 chr16,52085309,52085451,-,MIR,SINE,MIR,-1,261,128,52085308,52085578 -4 - chr16 52094966 52095073 chr16,52094966,52095112,-,MER5A1,DNA,hAT-Charlie,-7,159,9,52094959,52095120 -4 - chr16 52098300 52098470 chr16,52097942,52098470,-,LTR85a,LTR,Gypsy?,-204,498,4,52097738,52098473 -2 - chr16 52098481 52098532 chr16,52098481,52098532,+,A-rich,Low_complexity,Low_complexity,1,54,0,52098481,52098532 +6 + chr16 52198012 52198215 chr16,52195283,52198215,-,L1PA4,LINE,L1,-8,6147,3215,52195275,52201429 +5 - chr16 52240192 52240243 chr16,52239943,52240325,+,MSTD,LTR,ERVL-MaLR,1,396,0,52239943,52240325 +3 + chr16 52243404 52243506 chr16,52243313,52243754,+,ERV3-16A3_I-int,LTR,ERVL,4785,5226,0,52238529,52243754 +3 + chr16 52258564 52258583 chr16,52258285,52258719,+,MLT1O,LTR,ERVL-MaLR,83,523,-19,52258203,52258738 +1 + chr16 52269128 52269166 chr16,52268221,52269166,+,Tigger1,DNA,TcMar-Tigger,1419,2416,-2,52266803,52269168 +2 + chr16 52269215 52269274 chr16,52269215,52269274,+,L2c,LINE,L2,3280,3338,-49,52265936,52269323 +6 + chr16 52269410 52269440 chr16,52269410,52269445,+,(TATA)n,Simple_repeat,Simple_repeat,1,35,0,52269410,52269445 +5 + chr16 52590936 52591067 chr16,52590893,52591263,+,MLT1J2,LTR,ERVL-MaLR,41,447,-1,52590853,52591264 -3 + chr16 52606504 52606610 chr16,52606274,52606610,+,L2a,LINE,L2,3048,3403,-23,52603227,52606633 -4 + chr16 52606611 52606793 chr16,52606611,52606793,-,MER104,DNA,TcMar-Tc2,0,181,1,52606611,52606793 +6 - chr16 52608836 52608856 chr16,52608714,52608856,+,MIRb,SINE,MIR,6,150,-118,52608709,52608974 +2 + chr16 52610758 52611059 chr16,52610758,52611125,+,Charlie29a,DNA,hAT-Charlie,327,718,-1,52610432,52611126 +5 + chr16 52613653 52613753 chr16,52613614,52613753,+,MLT1I,LTR,ERVL-MaLR,20,166,-245,52613595,52613998 +2 + chr16 52613802 52613847 chr16,52613802,52613847,+,(GGAGACA)n,Simple_repeat,Simple_repeat,1,46,0,52613802,52613847 +6 + chr16 52622817 52622894 chr16,52622817,52623053,-,MIR,SINE,MIR,-1,261,5,52622816,52623057 -1 - chr16 52630861 52630883 chr16,52630861,52630948,-,MLT1I,LTR,ERVL-MaLR,0,411,320,52630861,52631267 -4 - chr16 52630972 52631088 chr16,52630972,52631208,-,MLT1I,LTR,ERVL-MaLR,-234,315,51,52630738,52631258 -5 - chr16 52630972 52631046 chr16,52630972,52631208,-,MLT1I,LTR,ERVL-MaLR,-234,315,51,52630738,52631258 +5 - chr16 52651952 52651995 chr16,52651828,52651995,+,MER45A,DNA,hAT-Tip100,1,177,-1,52651828,52651996 -4 + chr16 52652000 52652105 chr16,52652000,52652194,+,MIRb,SINE,MIR,15,229,-39,52651986,52652233 -1 + chr16 53035690 53035961 chr16,53035681,53035979,+,AluJr,SINE,Alu,2,297,-15,53035680,53035994 -5 + chr16 53047205 53047283 chr16,53047170,53047331,+,L1MC5a,LINE,L1,5476,5618,-561,53041695,53047892 -3 + chr16 53168604 53168634 chr16,53168604,53168634,-,L2b,LINE,L2,-12,3363,3334,53168592,53171967 -6 - chr16 53168634 53168690 chr16,53168634,53168690,+,MADE1,DNA,TcMar-Mariner,1,79,-1,53168634,53168691 +6 + chr16 53168690 53168711 chr16,53168690,53168711,-,L2b,LINE,L2,-42,3333,3313,53168648,53172023 -6 - chr16 53169182 53169212 chr16,53168958,53169212,+,AluJb,SINE,Alu,31,286,-26,53168928,53169238 +2 + chr16 53169235 53169358 chr16,53169235,53169358,-,AluJr,SINE,Alu,-187,125,2,53169048,53169359 -6 - chr16 53227146 53227194 chr16,53227019,53227194,+,MIR,SINE,MIR,65,257,-5,53226955,53227199 +1 + chr16 53227217 53227309 chr16,53227217,53227309,+,L2a,LINE,L2,3322,3418,-8,53223896,53227317 +6 + chr16 53310797 53310856 chr16,53310565,53310856,+,AluSq2,SINE,Alu,1,288,-25,53310565,53310881 +1 + chr16 53310857 53310891 chr16,53310857,53310891,+,(AAT)n,Simple_repeat,Simple_repeat,1,34,0,53310857,53310891 +6 + chr16 53310905 53311191 chr16,53310905,53311191,+,AluJr,SINE,Alu,2,299,-13,53310904,53311204 +6 + chr16 53311321 53311493 chr16,53311321,53311493,+,MIRb,SINE,MIR,88,257,-11,53311234,53311504 +6 + chr16 53311704 53311925 chr16,53311704,53311925,+,MIRb,SINE,MIR,4,250,-18,53311701,53311943 +6 + chr16 53384174 53384745 chr16,53384165,53385236,+,MER11B,LTR,ERVK,1,1232,-4,53384165,53385240 +5 + chr16 53386944 53386960 chr16,53386557,53386960,-,L1MDa,LINE,L1,-6171,462,3,53380386,53386962 -1 - chr16 53387117 53387543 chr16,53387117,53387543,-,HAL1b,LINE,L1,-188,2233,1752,53386929,53389294 -6 - chr16 53387629 53387706 chr16,53387629,53387706,+,L1M5,LINE,L1,4129,4206,-1940,53383501,53389646 +6 + chr16 53387975 53388584 chr16,53387975,53388584,-,HAL1b,LINE,L1,-1516,905,229,53386459,53388812 -6 - chr16 53389021 53389085 chr16,53389021,53389264,+,AluSx,SINE,Alu,56,296,-16,53388966,53389280 +5 + chr16 53390082 53390191 chr16,53390082,53390191,-,MamRTE1,LINE,RTE-BovB,-3303,509,395,53386779,53390585 -6 - chr16 53390472 53390517 chr16,53390472,53390517,+,(CTTCT)n,Simple_repeat,Simple_repeat,1,48,0,53390472,53390517 +6 + chr16 53391198 53391228 chr16,53391198,53391228,-,L2c,LINE,L2,-3,3384,3355,53391195,53394582 -6 - chr16 53391304 53391336 chr16,53391304,53391336,+,(TTTC)n,Simple_repeat,Simple_repeat,1,32,0,53391304,53391336 +6 + chr16 53391770 53392051 chr16,53391770,53392051,-,L1ME4a,LINE,L1,-297,5827,5551,53391473,53397601 -6 - chr16 53392255 53392473 chr16,53392255,53392579,+,MER33,DNA,hAT-Charlie,1,324,0,53392255,53392579 +5 + chr16 53448748 53448782 chr16,53448473,53448782,-,AluSz6,SINE,Alu,-2,310,1,53448471,53448782 -1 - chr16 53448820 53448884 chr16,53448820,53448884,-,MIR3,SINE,MIR,-125,83,22,53448695,53448905 -6 - chr16 53449493 53449590 chr16,53449451,53449610,+,AluSx,SINE,Alu,140,307,-5,53449312,53449615 +5 + chr16 53478957 53479102 chr16,53478926,53479102,-,L1MB5,LINE,L1,-6651,216,26,53472275,53479127 +5 - chr16 53480876 53481163 chr16,53480876,53481163,+,AluSz,SINE,Alu,1,287,-25,53480876,53481188 -6 + chr16 53481301 53481517 chr16,53481301,53481517,+,MIR,SINE,MIR,36,260,-2,53481266,53481519 -6 + chr16 53487607 53487881 chr16,53486570,53487881,+,L1MD,LINE,L1,3916,5352,-794,53482655,53488675 -5 + chr16 53487880 53488410 chr16,53487880,53488410,+,L1ME1,LINE,L1,5445,6034,-145,53482436,53488555 -6 + chr16 53488697 53488739 chr16,53488697,53488739,-,L2,LINE,L2,-1409,2010,1969,53487288,53490707 +6 - chr16 53488934 53489074 chr16,53488934,53489074,+,FLAM_C,SINE,Alu,1,135,-8,53488934,53489082 -6 + chr16 53489189 53489342 chr16,53489189,53489342,+,L1MC5,LINE,L1,9121,9288,-16,53480069,53489358 -6 + chr16 53489526 53489708 chr16,53489526,53489708,-,MER105,DNA,hAT-Charlie,-2,201,1,53489524,53489708 +6 - chr16 53981229 53981333 chr16,53981054,53981333,+,AluJr,SINE,Alu,13,291,-21,53981042,53981354 -5 + chr16 53981490 53981512 chr16,53981490,53981629,+,AluSx,SINE,Alu,1,137,-175,53981490,53981804 -2 + chr16 53981650 53981912 chr16,53981629,53981930,+,AluSq,SINE,Alu,3,302,-11,53981627,53981941 -1 + chr16 53994335 53994454 chr16,53994335,53994662,-,AluJr,SINE,Alu,-3,309,1,53994332,53994662 -5 - chr16 53998483 53998769 chr16,53998483,53998868,-,MLT1K,LTR,ERVL-MaLR,-8,587,195,53998475,53999062 +2 - chr16 53999922 53999969 chr16,53999922,53999991,-,MamRTE1,LINE,RTE-BovB,-1679,2133,2064,53998243,54002054 +1 - chr16 54039546 54039633 chr16,54039533,54039633,-,L2b,LINE,L2,-5,3370,3259,54039528,54042891 -2 - chr16 54039674 54039770 chr16,54039674,54039770,-,L2b,LINE,L2,-17,3370,3275,54039657,54043044 -6 - chr16 54040469 54040726 chr16,54040469,54040792,-,L2b,LINE,L2,-99,3276,2934,54040370,54043725 -5 - chr16 54153079 54153448 chr16,54153079,54153490,+,MLT1B,LTR,ERVL-MaLR,1,390,0,54153079,54153490 +5 + chr16 54270515 54270529 chr16,54270267,54270529,+,Charlie16a,DNA,hAT-Charlie,5,278,-64,54270263,54270593 -4 + chr16 54292108 54292370 chr16,54292108,54292370,-,MER113,DNA,hAT-Charlie,-60,461,179,54292048,54292548 -6 - chr16 54366007 54366020 chr16,54365622,54366020,-,L1ME4a,LINE,L1,-122,6002,5604,54365500,54371623 +5 - chr16 54366898 54367008 chr16,54366898,54367008,+,MIR3,SINE,MIR,46,161,-47,54366853,54367055 -6 + chr16 54848141 54848213 chr16,54847986,54848213,+,MIRb,SINE,MIR,14,252,-16,54847973,54848229 -4 + chr16 54852144 54852371 chr16,54852144,54852371,+,MIRc,SINE,MIR,2,231,-31,54852143,54852402 -6 + chr16 54852578 54852733 chr16,54852578,54852866,+,AluJb,SINE,Alu,1,304,-8,54852578,54852874 -1 + chr16 54928777 54928851 chr16,54928777,54928851,+,(CG)n,Simple_repeat,Simple_repeat,1,79,0,54928777,54928851 -1 + chr16 54954486 54954665 chr16,54954339,54954715,+,MLT1J1,LTR,ERVL-MaLR,71,442,-2,54954269,54954717 +5 + chr16 55282538 55282664 chr16,55282485,55282855,-,MLT1J2,LTR,ERVL-MaLR,-14,434,33,55282471,55282887 +3 - chr16 55332622 55332769 chr16,55332622,55332769,+,MIR1_Amn,SINE,MIR,4,156,-74,55332619,55332843 +6 + chr16 55333501 55333588 chr16,55333420,55333769,-,MLT1A0,LTR,ERVL-MaLR,0,365,10,55333420,55333778 +1 - chr16 55425577 55425721 chr16,55425577,55425721,+,L2a,LINE,L2,3280,3423,-3,55422298,55425724 -6 + chr16 55426797 55426970 chr16,55426741,55427216,-,MLT1J,LTR,ERVL-MaLR,-4,508,13,55426737,55427228 +5 - chr16 55427501 55427620 chr16,55427294,55427620,-,MLT1F2,LTR,ERVL-MaLR,-9,551,196,55427285,55427815 +5 - chr16 55427620 55427668 chr16,55427620,55427668,+,(AG)n,Simple_repeat,Simple_repeat,1,49,0,55427620,55427668 -6 + chr16 55427668 55427839 chr16,55427668,55427839,-,MLT1F2,LTR,ERVL-MaLR,-365,195,3,55427303,55427841 +6 - chr16 55446864 55446948 chr16,55446652,55447017,-,MLT1K,LTR,ERVL-MaLR,-20,575,205,55446632,55447221 +3 - chr16 55452772 55452860 chr16,55452750,55452878,+,FLAM_A,SINE,Alu,1,132,-10,55452750,55452888 -3 + chr16 55487851 55487896 chr16,55487851,55487896,+,(CCTT)n,Simple_repeat,Simple_repeat,1,45,0,55487851,55487896 +6 + chr16 55488078 55488169 chr16,55488078,55488169,+,MIRc,SINE,MIR,88,173,-95,55487991,55488264 +6 + chr16 55488213 55488438 chr16,55488213,55488438,+,MamRep38,DNA,hAT,32,251,-44,55488182,55488482 +6 + chr16 55538679 55538708 chr16,55538679,55538708,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,55538679,55538708 +6 + chr16 55538818 55538908 chr16,55538818,55538908,-,MER103C,DNA,hAT-Charlie,-190,107,5,55538628,55538912 -6 - chr16 55539243 55539275 chr16,55539243,55539275,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,55539243,55539275 +6 + chr16 55540723 55541003 chr16,55540723,55541003,-,MER44D,DNA,TcMar-Tigger,-4,701,427,55540719,55541429 -6 - chr16 55541008 55541176 chr16,55541008,55541176,-,MER44D,DNA,TcMar-Tigger,-535,170,1,55540473,55541176 -6 - chr16 55541510 55541537 chr16,55541510,55541537,+,(CA)n,Simple_repeat,Simple_repeat,1,28,0,55541510,55541537 +6 + chr16 55541537 55541550 chr16,55541537,55541550,+,(CATA)n,Simple_repeat,Simple_repeat,1,42,0,55541537,55541550 +6 + chr16 55541634 55541807 chr16,55541634,55541807,+,MIR,SINE,MIR,50,247,-15,55541585,55541822 +6 + chr16 55704170 55704195 chr16,55704170,55704195,+,(TTTG)n,Simple_repeat,Simple_repeat,1,25,0,55704170,55704195 +6 + chr16 55704196 55704410 chr16,55704196,55704410,-,MIRc,SINE,MIR,-42,226,9,55704154,55704418 -6 - chr16 55705473 55705618 chr16,55705473,55705618,+,MIRb,SINE,MIR,1,158,-110,55705473,55705728 +6 + chr16 55705904 55705995 chr16,55705904,55705995,-,OldhAT1,DNA,hAT-Ac,-1320,1528,1431,55704584,55707425 -6 - chr16 56092987 56093205 chr16,56092837,56093205,+,L1ME2,LINE,L1,879,1277,-5138,56091959,56098343 -5 + chr16 56093207 56093518 chr16,56093207,56093587,-,MLT2B3,LTR,ERVL,0,554,177,56093207,56093763 +2 - chr16 56101046 56101072 chr16,56100955,56101072,-,MIRb,SINE,MIR,-124,144,15,56100831,56101086 +4 - chr16 56101098 56101212 chr16,56101098,56101445,-,L1PA11,LINE,L1,0,6174,5830,56101098,56107274 +2 - chr16 56102032 56102095 chr16,56101985,56102095,-,Tigger15a,DNA,TcMar-Tigger,-594,121,8,56101391,56102102 +4 - chr16 56109761 56109790 chr16,56109761,56109790,+,A-rich,Low_complexity,Low_complexity,1,29,0,56109761,56109790 +6 + chr16 56151690 56151769 chr16,56151576,56151787,-,HAL1,LINE,L1,-609,1898,1672,56150967,56153458 +3 - chr16 56169735 56169774 chr16,56169735,56169774,+,A-rich,Low_complexity,Low_complexity,1,39,0,56169735,56169774 -6 + chr16 56169950 56170060 chr16,56169950,56170262,+,AluSq2,SINE,Alu,2,302,-11,56169949,56170273 -2 + chr16 56183911 56184018 chr16,56183911,56184018,-,MIR3,SINE,MIR,-76,132,6,56183835,56184023 +6 - chr16 56187074 56187160 chr16,56187035,56187160,+,MER5A,DNA,hAT-Charlie,60,187,-2,56186976,56187162 -5 + chr16 56187457 56187700 chr16,56187457,56187730,+,AluSz,SINE,Alu,14,285,-27,56187444,56187757 -2 + chr16 56190136 56190196 chr16,56190136,56190196,+,(TTGCCCC)n,Simple_repeat,Simple_repeat,1,60,0,56190136,56190196 -6 + chr16 56192726 56192751 chr16,56192726,56192751,+,(CA)n,Simple_repeat,Simple_repeat,1,25,0,56192726,56192751 -6 + chr16 56193218 56193264 chr16,56193218,56193264,+,G-rich,Low_complexity,Low_complexity,1,48,0,56193218,56193264 -6 + chr16 56300616 56300626 chr16,56300418,56300626,-,MIRb,SINE,MIR,-1,267,18,56300417,56300643 -1 - chr16 56300621 56300676 chr16,56300621,56300676,+,MIR,SINE,MIR,89,144,-118,56300533,56300794 +6 + chr16 56301775 56301921 chr16,56301775,56301921,-,MIR,SINE,MIR,-2,260,108,56301773,56302028 -6 - chr16 56302304 56302445 chr16,56302304,56302445,+,MIR3,SINE,MIR,60,193,-15,56302245,56302460 +6 + chr16 56302444 56302673 chr16,56302444,56302673,+,L2,LINE,L2,2689,2922,-497,56299756,56303170 +6 + chr16 56307513 56307662 chr16,56307513,56307662,-,MIRc,SINE,MIR,-27,241,80,56307486,56307741 -6 - chr16 56308178 56308335 chr16,56308178,56308392,+,MER113A,DNA,hAT-Charlie,3,224,-78,56308176,56308470 +5 + chr16 56352900 56352984 chr16,56352900,56352984,+,MIR,SINE,MIR,95,183,-79,56352806,56353063 -6 + chr16 56411429 56411503 chr16,56411235,56411503,-,AluJr,SINE,Alu,-14,298,38,56411221,56411540 -2 - chr16 56411503 56411575 chr16,56411503,56411575,+,L1MC5a,LINE,L1,837,914,-1863,56410667,56413438 +6 + chr16 56465642 56465959 chr16,56465575,56465959,+,L1ME4a,LINE,L1,5637,6047,-77,56459939,56466036 -5 + chr16 56609870 56609884 chr16,56609870,56610110,-,Charlie10,DNA,hAT-Charlie,-4,2818,2556,56609866,56612665 +2 - chr16 56683355 56683386 chr16,56683355,56683510,-,MIR3,SINE,MIR,-15,193,15,56683340,56683524 -4 - chr16 56708828 56708961 chr16,56708828,56708961,-,LTR16A1,LTR,ERVL,-160,296,146,56708668,56709106 +6 - chr16 56710043 56710177 chr16,56710043,56710236,+,MIR,SINE,MIR,1,207,-23,56710043,56710259 -2 + chr16 56729506 56729879 chr16,56729487,56729879,+,L2b,LINE,L2,2952,3354,-21,56726536,56729900 -4 + chr16 56940302 56940401 chr16,56940302,56940608,-,AluSx1,SINE,Alu,-1,311,1,56940301,56940608 -4 - chr16 56940866 56940965 chr16,56940679,56940965,+,AluSx,SINE,Alu,1,290,-22,56940679,56940987 +2 + chr16 56941299 56941517 chr16,56941299,56941517,+,MER20,DNA,hAT-Charlie,1,219,0,56941299,56941517 +5 + chr16 57052984 57053097 chr16,57052984,57053525,-,L2a,LINE,L2,-8,3418,2822,57052976,57056346 +2 - chr16 57091213 57091300 chr16,57091095,57091300,+,L2b,LINE,L2,3093,3322,-53,57088003,57091353 -5 + chr16 57141641 57141817 chr16,57141641,57141817,+,MIR,SINE,MIR,51,241,-21,57141591,57141838 -6 + chr16 57142077 57142580 chr16,57142077,57142580,-,L2b,LINE,L2,0,3375,2827,57142077,57145406 +6 - chr16 57143514 57143637 chr16,57143514,57143637,+,MIRb,SINE,MIR,22,154,-114,57143493,57143751 +6 + chr16 57143514 57143637 chr16,57143514,57143637,+,MIRb,SINE,MIR,22,154,-114,57143493,57143751 -6 + chr16 57144454 57144535 chr16,57144454,57144535,+,MIRc,SINE,MIR,49,144,-124,57144406,57144659 +6 + chr16 57144454 57144535 chr16,57144454,57144535,+,MIRc,SINE,MIR,49,144,-124,57144406,57144659 -6 + chr16 57144665 57144936 chr16,57144665,57144955,+,AluSx1,SINE,Alu,1,300,-12,57144665,57144967 +5 + chr16 57245943 57246026 chr16,57245943,57246026,+,L1MC5a,LINE,L1,2676,2765,-12,57243268,57246038 -6 + chr16 57246365 57246396 chr16,57246365,57246520,-,Charlie22a,DNA,hAT-Charlie,-13,478,340,57246352,57246859 +1 - chr16 57247406 57247457 chr16,57247406,57247535,+,FLAM_C,SINE,Alu,5,129,-14,57247402,57247549 +4 + chr16 57248243 57248340 chr16,57248031,57248340,+,AluSq2,SINE,Alu,1,312,-1,57248031,57248341 +2 + chr16 57622034 57622121 chr16,57621978,57622142,+,FRAM,SINE,Alu,1,166,-10,57621978,57622152 -5 + chr16 57681138 57681210 chr16,57681138,57681326,-,L1MC4a,LINE,L1,-10,7872,7678,57681128,57689003 +2 - chr16 57686733 57686784 chr16,57686733,57686784,-,MLT1O,LTR,ERVL-MaLR,-398,144,94,57686335,57686877 +6 - chr16 57697963 57698007 chr16,57697963,57698007,+,GA-rich,Low_complexity,Low_complexity,1,44,0,57697963,57698007 -6 + chr16 57759520 57759641 chr16,57759520,57759641,+,MIRc,SINE,MIR,119,237,-31,57759402,57759672 +6 + chr16 57759877 57760019 chr16,57759877,57760019,+,MIR,SINE,MIR,67,211,-57,57759811,57760076 +6 + chr16 57807702 57807952 chr16,57807702,57807959,+,AluJr,SINE,Alu,49,312,0,57807654,57807959 +5 + chr16 57810709 57810784 chr16,57810709,57810827,-,MIRb,SINE,MIR,-36,232,124,57810673,57810950 -4 - chr16 57816220 57816249 chr16,57816179,57816249,-,MIR3,SINE,MIR,-38,170,108,57816141,57816356 -2 - chr16 58119133 58119172 chr16,58118953,58119172,+,MamRep605,LTR?,LTR?,394,651,-198,58118560,58119370 +2 + chr16 58119302 58119353 chr16,58119302,58119369,+,L2a,LINE,L2,3348,3416,-10,58115955,58119379 +5 + chr16 58129650 58129663 chr16,58129650,58129688,+,(ACGTG)n,Simple_repeat,Simple_repeat,1,39,0,58129650,58129688 +4 + chr16 58137951 58138050 chr16,58137417,58138174,+,L1MEg,LINE,L1,1136,2037,-4378,58136282,58142552 +3 + chr16 58217553 58217805 chr16,58217312,58217842,+,MLT1G1,LTR,ERVL-MaLR,1,563,-6,58217312,58217848 +5 + chr16 58382989 58383169 chr16,58382967,58383388,-,MLT1H1,LTR,ERVL-MaLR,-24,531,109,58382943,58383496 +5 - chr16 58383606 58383747 chr16,58383477,58383747,-,AluJb,SINE,Alu,-45,267,1,58383432,58383747 +4 - chr16 58383766 58383798 chr16,58383766,58383867,-,MLT1H1-int,LTR,ERVL-MaLR,-1,1408,1306,58383765,58385172 +1 - chr16 58421326 58421421 chr16,58421130,58421503,+,THE1C,LTR,ERVL-MaLR,1,375,0,58421130,58421503 +1 + chr16 58435719 58435927 chr16,58435719,58435927,-,LTR33,LTR,ERVL,-293,222,6,58435426,58435932 -6 - chr16 58436007 58436101 chr16,58436007,58436101,+,MIR3,SINE,MIR,104,206,-2,58435904,58436103 +6 + chr16 58450393 58450538 chr16,58450393,58450538,+,MER5A,DNA,hAT-Charlie,7,163,-26,58450387,58450564 +6 + chr16 58461471 58461582 chr16,58461441,58461738,-,AluSx,SINE,Alu,-4,308,1,58461437,58461738 -3 - chr16 58462154 58462283 chr16,58462054,58462283,-,MIRb,SINE,MIR,0,268,35,58462054,58462317 -2 - chr16 58522970 58523262 chr16,58522963,58523262,+,AluSx1,SINE,Alu,1,300,-12,58522963,58523274 +1 + chr16 58523628 58523842 chr16,58523628,58523965,-,Charlie1b,DNA,hAT-Charlie,-261,262,77,58523367,58524041 -5 - chr16 58706269 58706297 chr16,58706269,58706579,-,AluSp,SINE,Alu,-2,311,1,58706267,58706579 +1 - chr16 58749638 58750043 chr16,58748675,58750043,+,LTR12C,LTR,ERV1,2,1578,-1,58748674,58750044 +1 + chr16 58750043 58750113 chr16,58750043,58750226,-,AluSx3,SINE,Alu,-105,206,25,58749938,58750250 -4 - chr16 58755976 58756071 chr16,58755907,58756071,+,MIRb,SINE,MIR,14,185,-83,58755894,58756154 +2 + chr16 58862059 58862170 chr16,58862059,58862421,-,THE1B,LTR,ERVL-MaLR,0,364,1,58862059,58862421 -5 - chr16 58879879 58880025 chr16,58879768,58880025,+,L1ME3Cz,LINE,L1,169,291,-706,58879600,58880731 -4 + chr16 58880168 58880213 chr16,58880114,58880623,-,MLT1J,LTR,ERVL-MaLR,-2,510,4,58880112,58880626 +1 - chr16 59107428 59107830 chr16,59107415,59107830,-,MLT2B1,LTR,ERVL,-65,455,1,59107350,59107830 -2 - chr16 59107869 59108127 chr16,59107869,59108127,-,MIR,SINE,MIR,-1,261,7,59107868,59108133 -6 - chr16 59108237 59108357 chr16,59108237,59108357,-,MIRb,SINE,MIR,-23,245,126,59108214,59108482 -6 - chr16 59855478 59855525 chr16,59855478,59855590,+,L3,LINE,CR1,3786,3914,-185,59851693,59855775 +4 + chr16 60048008 60048306 chr16,60048008,60048306,+,AluSg,SINE,Alu,1,296,-14,60048008,60048320 +6 + chr16 60048306 60048333 chr16,60048306,60048333,+,(CAA)n,Simple_repeat,Simple_repeat,1,28,0,60048306,60048333 +6 + chr16 60050369 60050549 chr16,60050369,60050549,-,L1PA7,LINE,L1,-167,5987,5807,60050202,60056355 -6 - chr16 60052042 60052082 chr16,60052042,60052082,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,41,0,60052042,60052082 +6 + chr16 60052092 60052397 chr16,60052092,60052397,-,L3,LINE,CR1,-23,4076,3769,60052069,60056165 -6 - chr16 60052935 60053038 chr16,60052935,60053038,+,(TC)n,Simple_repeat,Simple_repeat,1,109,0,60052935,60053038 +6 + chr16 60053044 60053150 chr16,60053044,60053150,-,MIRb,SINE,MIR,-108,160,48,60052936,60053197 -6 - chr16 60053821 60053861 chr16,60053821,60053861,+,A-rich,Low_complexity,Low_complexity,1,40,0,60053821,60053861 +6 + chr16 60364817 60364853 chr16,60364800,60364853,-,MIRc,SINE,MIR,-116,152,96,60364684,60364948 -2 - chr16 60365029 60365143 chr16,60365029,60365143,-,L2c,LINE,L2,-284,3103,2989,60364745,60368131 -6 - chr16 60365588 60365639 chr16,60365588,60365639,+,(TCAAT)n,Simple_repeat,Simple_repeat,1,52,0,60365588,60365639 +6 + chr16 60486986 60487009 chr16,60486986,60487009,+,(TTGC)n,Simple_repeat,Simple_repeat,1,23,0,60486986,60487009 -6 + chr16 60487016 60487070 chr16,60487016,60487114,+,(ATGA)n,Simple_repeat,Simple_repeat,1,101,0,60487016,60487114 -2 + chr16 60521731 60521798 chr16,60521368,60522334,+,L1MA4A,LINE,L1,6745,7711,-11,60514624,60522345 -3 + chr16 60523006 60523250 chr16,60522745,60528760,+,L1PA2,LINE,L1,124,6144,-11,60522622,60528771 -1 + chr16 61692020 61692113 chr16,61692020,61692113,-,MER94,DNA,hAT-Blackjack,-2,132,35,61692018,61692147 +6 - chr16 61692776 61693268 chr16,61692776,61693268,+,MLT1H-int,LTR,ERVL-MaLR,37,502,-907,61692740,61694175 -6 + chr16 61693263 61693461 chr16,61693263,61693461,+,MER58A,DNA,hAT-Charlie,10,214,-10,61693254,61693471 -6 + chr16 61918321 61918399 chr16,61918303,61919817,+,L1HS,LINE,L1,829,2340,-4513,61917475,61924330 +1 + chr16 61940398 61940697 chr16,61940398,61940700,-,AluSc,SINE,Alu,-11,298,1,61940387,61940700 -5 - chr16 63057311 63057344 chr16,63057311,63057344,+,A-rich,Low_complexity,Low_complexity,1,34,0,63057311,63057344 -6 + chr16 63058966 63059044 chr16,63058966,63059044,-,L3,LINE,CR1,-193,3906,3825,63058773,63062868 +6 - chr16 63066526 63066784 chr16,63066503,63066784,-,LTR109A2,LTR,ERV1,0,419,131,63066503,63066914 +5 - chr16 63090262 63090322 chr16,63089679,63090591,+,L1MA6,LINE,L1,5274,6144,-12,63084406,63090603 -3 + chr16 63119323 63119365 chr16,63118512,63119671,+,L1ME1,LINE,L1,1517,2959,-557,63116996,63120228 -3 + chr16 63129174 63129273 chr16,63129014,63129273,-,THE1C,LTR,ERVL-MaLR,0,428,155,63129014,63129427 +4 - chr16 63129273 63129466 chr16,63129273,63129466,+,AluSx,SINE,Alu,1,194,-118,63129273,63129584 -6 + chr16 63129466 63129654 chr16,63129466,63130870,+,LTR12E,LTR,ERV1,6,1560,-19,63129461,63130889 -1 + chr16 63314264 63314322 chr16,63313706,63314591,+,L1PB3,LINE,L1,5230,6150,-4,63308477,63314595 -5 + chr16 63334609 63334667 chr16,63334609,63335078,-,MER119,DNA,hAT-Charlie,0,583,54,63334609,63335131 +2 - chr16 63368844 63369037 chr16,63368795,63369037,-,L1ME3A,LINE,L1,-336,5837,5597,63368459,63374633 -1 - chr16 63397887 63397919 chr16,63397887,63397919,-,L2b,LINE,L2,-16,3359,3328,63397871,63401246 -6 - chr16 63532817 63532931 chr16,63532590,63534949,-,Tigger1,DNA,TcMar-Tigger,-1,2417,2,63532589,63534950 +3 - chr16 63617693 63618046 chr16,63617691,63618801,-,MER52A,LTR,ERV1,-345,1410,1,63617346,63618801 +1 - chr16 63730277 63730312 chr16,63729845,63730540,-,MER44D,DNA,TcMar-Tigger,-1,704,1,63729844,63730540 -1 - chr16 63730476 63730540 chr16,63729845,63730540,-,MER44D,DNA,TcMar-Tigger,-1,704,1,63729844,63730540 -1 - chr16 63730544 63730650 chr16,63730544,63730888,+,MER2,DNA,TcMar-Tigger,1,344,-1,63730544,63730889 +4 + chr16 63754606 63754647 chr16,63754155,63754647,+,MER4CL34,LTR,ERV1,4,750,-15,63754152,63754662 +2 + chr16 63754662 63754757 chr16,63754662,63756045,+,L1MA4,LINE,L1,2017,3431,-4134,63752646,63760179 +5 + chr16 63935778 63936411 chr16,63935654,63936411,+,L2a,LINE,L2,2516,3295,-92,63933139,63936503 +1 + chr16 63936625 63936906 chr16,63936625,63936928,+,AluYm1,SINE,Alu,1,303,-8,63936625,63936936 +5 + chr16 64155169 64155291 chr16,64155061,64155291,-,L2,LINE,L2,-1039,2380,2139,64154022,64157429 -1 - chr16 64245744 64245777 chr16,64244854,64246362,+,L1PA16,LINE,L1,4671,6157,-9,64240184,64246371 -3 + chr16 64317566 64317681 chr16,64317429,64317699,+,AluJr4,SINE,Alu,2,273,-39,64317428,64317738 -3 + chr16 64343577 64343688 chr16,64343577,64343688,+,MER52A,LTR,ERV1,2,102,-1653,64343576,64345341 -6 + chr16 64343676 64343711 chr16,64343676,64343711,+,MER52A,LTR,ERV1,228,276,-1479,64343449,64345190 -6 + chr16 64343711 64343909 chr16,64343711,64345204,+,LTR12C,LTR,ERV1,2,1579,0,64343710,64345204 -1 + chr16 64479102 64479185 chr16,64479102,64479359,+,MIR,SINE,MIR,5,259,-3,64479098,64479362 +4 + chr16 64534992 64535076 chr16,64534769,64535157,+,THE1D,LTR,ERVL-MaLR,2,381,0,64534768,64535157 +3 + chr16 64600139 64600247 chr16,64600110,64600416,-,AluSz,SINE,Alu,-7,305,1,64600103,64600416 -5 - chr16 64735925 64735993 chr16,64735313,64735997,-,L2a,LINE,L2,-1,3425,2638,64735312,64738634 -1 - chr16 64736432 64736503 chr16,64736432,64736503,+,L2b,LINE,L2,3128,3198,-177,64733305,64736680 +6 + chr16 64981123 64981406 chr16,64981079,64981406,-,AluSx,SINE,Alu,0,312,1,64981079,64981406 +5 - chr16 64981498 64981730 chr16,64981498,64981730,+,MIRb,SINE,MIR,23,268,0,64981476,64981730 -6 + chr16 64982797 64983097 chr16,64982797,64983097,+,MER113,DNA,hAT-Charlie,4,345,-176,64982794,64983273 -6 + chr16 65141938 65141996 chr16,65141938,65141996,-,MLT1J2,LTR,ERVL-MaLR,-320,128,67,65141618,65142062 +6 - chr16 65176094 65176200 chr16,65176094,65176242,+,MIRb,SINE,MIR,26,181,-87,65176069,65176329 -5 + chr16 65190973 65191069 chr16,65190571,65191069,-,L1MC3,LINE,L1,0,7785,7287,65190571,65198355 +5 - chr16 65191069 65191215 chr16,65191069,65191228,+,AluJr4,SINE,Alu,136,292,-20,65190934,65191248 -2 + chr16 65227897 65227928 chr16,65227897,65227928,+,(TTAT)n,Simple_repeat,Simple_repeat,1,31,0,65227897,65227928 -6 + chr16 65233056 65233180 chr16,65232144,65234891,-,HERVH-int,LTR,ERV1,-4718,2995,141,65227426,65235031 -1 - chr16 65233015 65233885 chr16,65232144,65234891,-,HERVH-int,LTR,ERV1,-4718,2995,141,65227426,65235031 +1 - chr16 65234899 65234914 chr16,65234899,65235349,-,LTR7,LTR,ERV1,-2,448,1,65234897,65235349 +1 - chr16 65284526 65284558 chr16,65284526,65284558,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,33,0,65284526,65284558 -6 + chr16 65356431 65356480 chr16,65356289,65356480,-,MLT2B4,LTR,ERVL,-347,209,1,65355942,65356480 +4 - chr16 65363382 65363503 chr16,65363382,65363514,+,MIRc,SINE,MIR,14,147,-121,65363369,65363635 -2 + chr16 65363738 65363808 chr16,65363738,65364089,-,LTR16A,LTR,ERVL,-18,433,60,65363720,65364148 +2 - chr16 65375204 65375326 chr16,65375063,65375328,+,AluSp,SINE,Alu,2,282,-31,65375062,65375359 -3 + chr16 65396130 65396195 chr16,65396130,65396278,+,MIRb,SINE,MIR,8,176,-92,65396123,65396370 +4 + chr16 65576239 65576300 chr16,65576119,65576487,-,THE1D,LTR,ERVL-MaLR,0,381,1,65576119,65576487 +1 - chr16 65580668 65580750 chr16,65580545,65580908,-,L1ME2,LINE,L1,-17,6147,5780,65580528,65586687 -1 - chr16 65601164 65601454 chr16,65601164,65601484,+,L2c,LINE,L2,3024,3377,-10,65598141,65601494 -2 + chr16 65646688 65646947 chr16,65646688,65646987,+,MLT1H,LTR,ERVL-MaLR,245,672,-8,65646444,65646995 +5 + chr16 65861704 65862050 chr16,65861704,65862050,+,MER47A,DNA,TcMar-Tigger,1,366,0,65861704,65862050 -6 + chr16 65862418 65862749 chr16,65862418,65862749,-,L2c,LINE,L2,0,3387,3039,65862418,65865787 +6 - chr16 65862797 65862830 chr16,65862797,65862830,-,L2c,LINE,L2,-445,2942,2910,65862352,65865739 +6 - chr16 65862916 65863071 chr16,65862916,65863071,-,MER103C,DNA,hAT-Charlie,-73,224,79,65862843,65863149 +6 - chr16 65863130 65863344 chr16,65863130,65863344,-,L2c,LINE,L2,-540,2879,2663,65862590,65866006 +6 - chr16 66408524 66408538 chr16,66408442,66408538,-,LTR91,LTR,ERVL,-56,143,42,66408386,66408579 -1 - chr16 66410280 66410653 chr16,66410159,66410653,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,66410159,66410653 -2 - chr16 66410792 66411382 chr16,66410792,66411382,-,Tigger18a,DNA,TcMar-Tigger,-40,812,150,66410752,66411531 -6 - chr16 66411403 66412135 chr16,66411403,66412616,+,L1ME1,LINE,L1,4401,5605,-574,66407003,66413190 +5 + chr16 66469796 66469832 chr16,66469783,66469832,+,(CAC)n,Simple_repeat,Simple_repeat,1,49,0,66469783,66469832 -5 + chr16 66475739 66475828 chr16,66475739,66475828,-,L1ME4a,LINE,L1,-4,6120,6051,66475735,66481878 +6 - chr16 66475828 66475867 chr16,66475828,66476139,+,AluY,SINE,Alu,1,311,0,66475828,66476139 -1 + chr16 66476264 66476315 chr16,66476139,66476315,-,L1ME4a,LINE,L1,-74,6050,5861,66476065,66482175 +4 - chr16 66476325 66476402 chr16,66476325,66476477,+,MIRb,SINE,MIR,10,188,-80,66476316,66476557 -1 + chr16 66479008 66479131 chr16,66478982,66479155,+,MIRb,SINE,MIR,30,208,-60,66478953,66479215 -3 + chr16 66550352 66550498 chr16,66550352,66550498,-,MIRb,SINE,MIR,-15,253,93,66550337,66550590 -6 - chr16 66550504 66550572 chr16,66550504,66550572,+,HY1,scRNA,scRNA,51,118,-1,66550454,66550573 +6 + chr16 66550584 66550884 chr16,66550584,66550884,+,AluSx1,SINE,Alu,1,292,-20,66550584,66550904 +6 + chr16 66550906 66551189 chr16,66550906,66551212,+,AluSz6,SINE,Alu,1,305,-7,66550906,66551219 +5 + chr16 66731585 66731701 chr16,66731585,66731701,+,L2c,LINE,L2,3266,3385,-2,66728320,66731703 +6 + chr16 66738263 66738318 chr16,66738241,66738549,-,AluSg7,SINE,Alu,0,309,1,66738241,66738549 -1 - chr16 66738847 66738881 chr16,66738594,66738881,+,AluSx1,SINE,Alu,1,291,-21,66738594,66738902 +2 + chr16 66738884 66738935 chr16,66738884,66738935,+,(AC)n,Simple_repeat,Simple_repeat,1,51,0,66738884,66738935 +6 + chr16 66751776 66751850 chr16,66751776,66751850,+,(GGC)n,Simple_repeat,Simple_repeat,1,75,0,66751776,66751850 +6 + chr16 66752067 66752151 chr16,66752067,66752151,-,MIRc,SINE,MIR,-115,153,72,66751952,66752222 -6 - chr16 66752167 66752399 chr16,66752167,66752399,+,MER110A,LTR,ERV1,265,484,-7,66751903,66752406 +6 + chr16 66752462 66752497 chr16,66752462,66752497,+,A-rich,Low_complexity,Low_complexity,1,36,0,66752462,66752497 +6 + chr16 66752801 66752900 chr16,66752801,66753363,+,L3,LINE,CR1,2644,3352,-747,66750158,66754110 +4 + chr16 66752996 66753363 chr16,66752801,66753363,+,L3,LINE,CR1,2644,3352,-747,66750158,66754110 +2 + chr16 66753392 66753680 chr16,66753392,66753680,+,AluSz6,SINE,Alu,1,275,-37,66753392,66753717 +6 + chr16 66754213 66754495 chr16,66754213,66754495,-,AluJr4,SINE,Alu,-24,288,9,66754189,66754503 -6 - chr16 66841459 66841546 chr16,66841459,66841546,-,L1ME4b,LINE,L1,0,892,801,66841459,66842346 +6 - chr16 66841714 66841822 chr16,66841714,66841890,+,MIRb,SINE,MIR,26,216,-52,66841689,66841942 -2 + chr16 66888015 66888059 chr16,66887991,66888059,+,(TCCT)n,Simple_repeat,Simple_repeat,1,68,0,66887991,66888059 +1 + chr16 66888060 66888118 chr16,66888060,66888362,-,AluJb,SINE,Alu,0,312,1,66888060,66888362 -4 - chr16 66888274 66888362 chr16,66888060,66888362,-,AluJb,SINE,Alu,0,312,1,66888060,66888362 -2 - chr16 66888456 66888675 chr16,66888456,66888675,-,AluJr,SINE,Alu,-10,302,84,66888446,66888758 -6 - chr16 66889299 66889591 chr16,66889299,66889591,-,AluSz,SINE,Alu,-9,303,6,66889290,66889596 -6 - chr16 66889687 66889994 chr16,66889687,66889994,+,AluJb,SINE,Alu,1,312,0,66889687,66889994 +6 + chr16 66889997 66890304 chr16,66889997,66890304,+,AluSq2,SINE,Alu,1,307,-6,66889997,66890310 +6 + chr16 66944660 66944776 chr16,66944463,66944776,+,AluSq,SINE,Alu,1,309,-4,66944463,66944780 -5 + chr16 66944916 66944969 chr16,66944916,66944969,+,(CCCTCCT)n,Simple_repeat,Simple_repeat,1,54,0,66944916,66944969 -6 + chr16 66960678 66960769 chr16,66960511,66960791,-,AluJo,SINE,Alu,-24,288,1,66960487,66960791 -3 - chr16 67007035 67007254 chr16,67007035,67007254,-,L2c,LINE,L2,0,3375,3152,67007035,67010405 +6 - chr16 67007300 67007565 chr16,67007300,67007565,-,AluSz,SINE,Alu,-37,275,1,67007263,67007565 +6 - chr16 67007568 67007607 chr16,67007568,67007607,+,L2c,LINE,L2,2762,2798,-621,67004807,67008228 -6 + chr16 67007607 67007787 chr16,67007607,67007787,-,AluJo,SINE,Alu,-2,310,137,67007605,67007923 +6 - chr16 67007787 67008084 chr16,67007787,67008084,-,AluY,SINE,Alu,-15,296,1,67007772,67008084 +6 - chr16 67008084 67008220 chr16,67008084,67008220,-,AluJo,SINE,Alu,-176,136,1,67007908,67008220 +6 - chr16 67008220 67008392 chr16,67008220,67008392,+,L2c,LINE,L2,2799,2963,-456,67005422,67008848 -6 + chr16 67008392 67008699 chr16,67008392,67008699,-,AluYf1,SINE,Alu,-2,309,1,67008390,67008699 +6 - chr16 67008699 67008884 chr16,67008699,67008884,+,L2c,LINE,L2,2964,3170,-217,67005736,67009101 -6 + chr16 67205175 67205454 chr16,67205144,67205454,-,AluSq2,SINE,Alu,0,313,4,67205144,67205457 +5 - chr16 67205468 67205780 chr16,67205468,67205780,-,AluSp,SINE,Alu,0,313,1,67205468,67205780 +6 - chr16 67205837 67205873 chr16,67205837,67205873,+,(CTCAGTC)n,Simple_repeat,Simple_repeat,1,37,0,67205837,67205873 -6 + chr16 67206784 67206849 chr16,67206784,67206849,+,MIR3,SINE,MIR,142,208,0,67206643,67206849 -1 + chr16 67261108 67261338 chr16,67260813,67261338,-,L3,LINE,CR1,-58,4041,3384,67260755,67264721 -1 - chr16 67261373 67261561 chr16,67261373,67261561,-,L1MC5,LINE,L1,-45,9259,9065,67261328,67270625 -6 - chr16 67261576 67261927 chr16,67261576,67261927,-,L1MC5a,LINE,L1,-340,2437,2053,67261236,67263979 -6 - chr16 67261927 67261968 chr16,67261927,67261968,+,(GT)n,Simple_repeat,Simple_repeat,1,42,0,67261927,67261968 +6 + chr16 67261968 67261997 chr16,67261968,67261997,-,L1MC5a,LINE,L1,-725,2052,2025,67261243,67264021 -6 - chr16 67262044 67262371 chr16,67262044,67262371,-,CR1-3_Croc,LINE,CR1,-1276,2329,1972,67260768,67264342 -6 - chr16 67262494 67262633 chr16,67262494,67262633,-,MER5A1,DNA,hAT-Charlie,-29,137,3,67262465,67262635 -6 - chr16 67263502 67263784 chr16,67263502,67263803,+,AluSq2,SINE,Alu,1,302,-11,67263502,67263814 +5 + chr16 67481515 67481956 chr16,67481515,67482239,+,MER51C,LTR,ERV1,1,640,0,67481515,67482239 +5 + chr16 67484526 67484669 chr16,67484526,67484812,+,AluJr,SINE,Alu,1,301,-11,67484526,67484823 +5 + chr16 67487108 67487250 chr16,67487108,67487255,+,MLT2B2,LTR,ERVL,1,211,-309,67487108,67487564 +5 + chr16 67518016 67518072 chr16,67518016,67518072,+,(ACAGGC)n,Simple_repeat,Simple_repeat,1,58,0,67518016,67518072 -6 + chr16 67539266 67539430 chr16,67539255,67539430,-,L2b,LINE,L2,-87,3288,3102,67539168,67542531 +4 - chr16 67549263 67549335 chr16,67549263,67549335,+,(CCTCT)n,Simple_repeat,Simple_repeat,1,76,0,67549263,67549335 -6 + chr16 67550815 67551095 chr16,67550788,67551095,-,AluSp,SINE,Alu,-4,309,1,67550784,67551095 +5 - chr16 67551216 67551481 chr16,67551216,67551481,-,AluJr4,SINE,Alu,-15,297,1,67551201,67551481 +6 - chr16 67551490 67551559 chr16,67551490,67551559,-,L1MB8,LINE,L1,0,6178,6127,67551490,67557685 +6 - chr16 67551559 67551861 chr16,67551559,67551861,+,AluSx1,SINE,Alu,1,297,-15,67551559,67551876 -6 + chr16 67551861 67552079 chr16,67551861,67552079,-,L1MB8,LINE,L1,-52,6126,5912,67551809,67557990 +6 - chr16 67552127 67552181 chr16,67552127,67552181,-,MER5A,DNA,hAT-Charlie,-74,115,63,67552053,67552243 +6 - chr16 67552174 67552264 chr16,67552174,67552264,+,L2b,LINE,L2,3287,3371,-4,67548888,67552268 -6 + chr16 67552543 67552812 chr16,67552543,67552812,-,L2,LINE,L2,-421,2998,2705,67552122,67555516 +6 - chr16 67552812 67552935 chr16,67552812,67553112,+,AluJb,SINE,Alu,3,303,-9,67552810,67553121 -1 + chr16 67561411 67561523 chr16,67561308,67561523,+,Charlie8,DNA,hAT-Charlie,1,223,-2205,67561308,67563728 -5 + chr16 67562047 67562096 chr16,67562047,67562096,+,(GGCCG)n,Simple_repeat,Simple_repeat,1,49,0,67562047,67562096 -6 + chr16 67563295 67563331 chr16,67563294,67563331,+,(CCTG)n,Simple_repeat,Simple_repeat,1,37,0,67563294,67563331 -4 + chr16 67563893 67563958 chr16,67563893,67564072,-,X6A_LINE,LINE,CR1,-6,1074,870,67563887,67564941 +1 - chr16 67614414 67614451 chr16,67614414,67614556,+,AluSz,SINE,Alu,1,142,-170,67614414,67614726 -2 + chr16 67614892 67615153 chr16,67614855,67615153,+,AluSc8,SINE,Alu,2,291,-20,67614854,67615173 -4 + chr16 67615332 67615342 chr16,67615332,67615636,+,AluJb,SINE,Alu,1,305,-7,67615332,67615643 -1 + chr16 67738588 67738751 chr16,67738444,67738751,-,AluY,SINE,Alu,-4,307,1,67738440,67738751 +5 - chr16 67738939 67738971 chr16,67738939,67738971,-,MIRb,SINE,MIR,-15,253,215,67738924,67739185 +6 - chr16 67738971 67739073 chr16,67738971,67739265,-,AluSz,SINE,Alu,-23,289,1,67738948,67739265 +2 - chr16 67883748 67883784 chr16,67883748,67883784,+,G-rich,Low_complexity,Low_complexity,1,38,0,67883748,67883784 +6 + chr16 67884904 67884936 chr16,67884904,67884936,+,(TGC)n,Simple_repeat,Simple_repeat,1,33,0,67884904,67884936 +6 + chr16 68077340 68077359 chr16,68077252,68077359,-,AluJo,SINE,Alu,-197,115,14,68077055,68077372 -1 - chr16 68077391 68077529 chr16,68077391,68077688,-,AluSx,SINE,Alu,-16,296,1,68077375,68077688 -4 - chr16 68199795 68199885 chr16,68199580,68199885,-,AluY,SINE,Alu,-4,307,1,68199576,68199885 -5 - chr16 68199841 68199885 chr16,68199580,68199885,-,AluY,SINE,Alu,-4,307,1,68199576,68199885 +5 - chr16 68200402 68200419 chr16,68200402,68200419,+,(TA)n,Simple_repeat,Simple_repeat,1,17,0,68200402,68200419 +6 + chr16 68200402 68200419 chr16,68200402,68200419,+,(TA)n,Simple_repeat,Simple_repeat,1,17,0,68200402,68200419 -6 + chr16 68200424 68200512 chr16,68200424,68200512,-,L3,LINE,CR1,-730,3369,3281,68199694,68203792 -6 - chr16 68200424 68200512 chr16,68200424,68200512,-,L3,LINE,CR1,-730,3369,3281,68199694,68203792 +6 - chr16 68200929 68200981 chr16,68200929,68201231,-,AluSx1,SINE,Alu,-9,303,1,68200920,68201231 -1 - chr16 68200929 68200981 chr16,68200929,68201231,-,AluSx1,SINE,Alu,-9,303,1,68200920,68201231 +1 - chr16 68212482 68212503 chr16,68212482,68212503,+,(GTT)n,Simple_repeat,Simple_repeat,1,21,0,68212482,68212503 -6 + chr16 68212607 68212637 chr16,68212607,68212779,-,MER112,DNA,hAT-Charlie,0,261,95,68212607,68212873 +2 - chr16 68221512 68221658 chr16,68221512,68221658,-,L2a,LINE,L2,-4,3422,3255,68221508,68224912 +6 - chr16 68224826 68224964 chr16,68224826,68224964,-,L1MB7,LINE,L1,-8,6176,6056,68224818,68231019 -6 - chr16 68224964 68225250 chr16,68224964,68225250,-,AluSp,SINE,Alu,-24,289,2,68224940,68225251 -6 - chr16 68225250 68225676 chr16,68225250,68225676,-,L1MB7,LINE,L1,-129,6055,5628,68225121,68231303 -6 - chr16 68226897 68226960 chr16,68226897,68226960,+,(A)n,Simple_repeat,Simple_repeat,1,63,0,68226897,68226960 +6 + chr16 68226897 68226960 chr16,68226897,68226960,+,(A)n,Simple_repeat,Simple_repeat,1,63,0,68226897,68226960 -6 + chr16 68256162 68256416 chr16,68256087,68256481,-,LTR47A,LTR,ERVL,0,452,1,68256087,68256481 +5 - chr16 68258835 68258867 chr16,68258637,68258976,+,AluJb,SINE,Alu,3,299,-13,68258635,68258989 -1 + chr16 68290227 68290302 chr16,68290227,68290302,+,(CTT)n,Simple_repeat,Simple_repeat,1,78,0,68290227,68290302 -6 + chr16 68291762 68291800 chr16,68291762,68291800,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,68291762,68291800 -6 + chr16 68292132 68292187 chr16,68292132,68292187,-,L2b,LINE,L2,0,3375,3320,68292132,68295506 +6 - chr16 68292281 68292407 chr16,68292281,68292407,+,L2,LINE,L2,1600,1725,-1694,68290682,68294101 -6 + chr16 68292536 68292661 chr16,68292536,68292661,-,FLAM_A,SINE,Alu,-18,124,1,68292518,68292661 +6 - chr16 68292704 68292790 chr16,68292704,68292876,+,L2,LINE,L2,1925,2133,-1286,68290780,68294162 -1 + chr16 68316801 68316930 chr16,68316793,68316930,-,L2c,LINE,L2,-16,3359,3213,68316777,68320142 -1 - chr16 68318744 68318832 chr16,68318530,68318832,-,AluSx1,SINE,Alu,-9,303,1,68318521,68318832 -2 - chr16 68318988 68319036 chr16,68318988,68319164,-,L2c,LINE,L2,-801,2618,2428,68318187,68321591 -5 - chr16 68367325 68367470 chr16,68367277,68367470,-,MIRc,SINE,MIR,-54,214,1,68367223,68367470 +5 - chr16 68368935 68369235 chr16,68368935,68369235,+,AluSp,SINE,Alu,1,301,-12,68368935,68369247 -6 + chr16 68450430 68450603 chr16,68450430,68450603,-,AluSp,SINE,Alu,0,313,137,68450430,68450739 -6 - chr16 68450843 68450952 chr16,68450843,68450952,+,L3,LINE,CR1,1785,1922,-2177,68449059,68453129 +6 + chr16 68451457 68451545 chr16,68451457,68451545,+,MIR3,SINE,MIR,37,143,-65,68451421,68451610 +6 + chr16 68451588 68451897 chr16,68451588,68451897,+,AluJr,SINE,Alu,1,296,-16,68451588,68451913 +6 + chr16 68451930 68452067 chr16,68451930,68452067,+,MIRc,SINE,MIR,73,254,-14,68451858,68452081 +6 + chr16 68452144 68452318 chr16,68452144,68452329,+,MIRb,SINE,MIR,48,256,-6,68452097,68452335 +5 + chr16 68589408 68589505 chr16,68583448,68589505,-,L1HS,LINE,L1,0,6155,124,68583448,68589628 +4 - chr16 68591382 68591682 chr16,68591319,68591682,-,L1MC4,LINE,L1,-3,8039,7689,68591316,68599370 -1 - chr16 68591681 68591900 chr16,68591681,68591900,-,L1MC4,LINE,L1,-456,7586,7359,68591225,68599258 -6 - chr16 68592033 68592219 chr16,68592033,68592219,+,L2a,LINE,L2,2983,3195,-231,68589051,68592450 +6 + chr16 68592219 68592579 chr16,68592219,68592579,+,THE1B,LTR,ERVL-MaLR,4,364,0,68592216,68592579 +6 + chr16 68592579 68592733 chr16,68592579,68592733,+,L2a,LINE,L2,3196,3360,-66,68589384,68592799 +6 + chr16 68592746 68592815 chr16,68592746,68592815,+,L2a,LINE,L2,3081,3162,-213,68589666,68593028 +6 + chr16 68592892 68593048 chr16,68592892,68593048,-,AluJb,SINE,Alu,-10,302,142,68592882,68593189 -6 - chr16 68593084 68593183 chr16,68593084,68593183,+,L2a,LINE,L2,3315,3426,0,68589770,68593183 +6 + chr16 68593483 68593795 chr16,68593483,68593795,-,AluSx,SINE,Alu,-1,311,3,68593482,68593797 -6 - chr16 68593838 68594007 chr16,68593838,68594007,+,MLT1F,LTR,ERVL-MaLR,211,380,-168,68593628,68594175 +6 + chr16 68594007 68594303 chr16,68594007,68594303,-,AluY,SINE,Alu,-16,295,1,68593991,68594303 -6 - chr16 68594303 68594424 chr16,68594303,68594465,+,MLT1F,LTR,ERVL-MaLR,381,542,-6,68593923,68594471 +5 + chr16 68644273 68644379 chr16,68644273,68644379,-,MamRep488,DNA,hAT-Tip100,-100,119,3,68644173,68644381 +6 - chr16 68644446 68644758 chr16,68644446,68644758,+,AluJb,SINE,Alu,3,306,-6,68644444,68644764 -6 + chr16 68814330 68814544 chr16,68814275,68814561,+,AluSx,SINE,Alu,11,296,-16,68814265,68814577 -5 + chr16 68933820 68933833 chr16,68933430,68933833,-,MLT1H,LTR,ERVL-MaLR,-24,525,46,68933406,68933878 -1 - chr16 68937378 68937725 chr16,68937378,68937825,-,L1MB7,LINE,L1,0,6184,5735,68937378,68943559 -5 - chr16 69240853 69240905 chr16,69240853,69241159,-,AluSq2,SINE,Alu,-6,307,1,69240847,69241159 -4 - chr16 69241859 69241929 chr16,69241651,69241955,+,AluSz6,SINE,Alu,5,309,-3,69241647,69241958 +5 + chr16 69465197 69465220 chr16,69465197,69465220,+,(GCT)n,Simple_repeat,Simple_repeat,1,23,0,69465197,69465220 +6 + chr16 69632251 69632330 chr16,69632251,69632330,-,MIR,SINE,MIR,-3,259,180,69632248,69632509 -6 - chr16 69703065 69703163 chr16,69703044,69703163,-,LFSINE_Vert,SINE,tRNA,-54,405,294,69702990,69703456 -1 - chr16 69704009 69704038 chr16,69704009,69704038,+,(AC)n,Simple_repeat,Simple_repeat,1,29,0,69704009,69704038 +6 + chr16 69710050 69710101 chr16,69710050,69710339,+,AluSx1,SINE,Alu,1,291,-21,69710050,69710360 +4 + chr16 69710237 69710339 chr16,69710050,69710339,+,AluSx1,SINE,Alu,1,291,-21,69710050,69710360 +2 + chr16 69976297 69976338 chr16,69976290,69976338,+,(TATT)n,Simple_repeat,Simple_repeat,1,50,0,69976290,69976338 -5 + chr16 69976350 69976505 chr16,69976350,69976505,-,AluSq2,SINE,Alu,0,313,164,69976350,69976668 +5 - chr16 69977198 69977359 chr16,69977198,69977359,-,MIRb,SINE,MIR,-56,212,46,69977142,69977404 +6 - chr16 69990085 69990196 chr16,69990085,69990196,+,G-rich,Low_complexity,Low_complexity,1,117,0,69990085,69990196 -6 + chr16 69996390 69996468 chr16,69996297,69996477,+,MIRb,SINE,MIR,31,212,-56,69996267,69996533 -3 + chr16 70017890 70017923 chr16,70017889,70017923,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,70017889,70017923 -5 + chr16 70018537 70018674 chr16,70018537,70018674,+,MIR,SINE,MIR,98,234,-28,70018440,70018702 -6 + chr16 70018870 70018941 chr16,70018870,70018941,+,MIRb,SINE,MIR,178,251,-17,70018693,70018958 -6 + chr16 70018957 70018997 chr16,70018957,70018997,+,GA-rich,Low_complexity,Low_complexity,1,40,0,70018957,70018997 -6 + chr16 70317256 70317373 chr16,70317231,70317399,+,AluSz,SINE,Alu,138,302,-10,70317094,70317409 -3 + chr16 70341940 70341985 chr16,70341713,70341985,+,L2b,LINE,L2,2681,2990,-429,70339033,70342414 -4 + chr16 70346333 70346636 chr16,70346333,70346636,+,AluSg,SINE,Alu,1,309,-1,70346333,70346637 -6 + chr16 70379632 70379666 chr16,70379632,70379937,-,AluSz,SINE,Alu,-23,289,2,70379609,70379938 -4 - chr16 70662183 70662213 chr16,70662183,70662213,+,(CAAT)n,Simple_repeat,Simple_repeat,1,31,0,70662183,70662213 +6 + chr16 70663559 70663606 chr16,70663559,70663606,+,(GCCTCT)n,Simple_repeat,Simple_repeat,1,50,0,70663559,70663606 +6 + chr16 70664146 70664236 chr16,70664146,70664236,+,(GGACGGT)n,Simple_repeat,Simple_repeat,1,91,0,70664146,70664236 +6 + chr16 70665778 70665836 chr16,70665778,70666178,-,L2,LINE,L2,-780,2639,2182,70664998,70668359 -5 - chr16 70715164 70715474 chr16,70715164,70715474,+,L2b,LINE,L2,3028,3369,-6,70712137,70715480 +6 + chr16 70716110 70716323 chr16,70716110,70716323,+,L2a,LINE,L2,3148,3419,-7,70712963,70716330 +6 + chr16 70747057 70747253 chr16,70746928,70747495,+,L1MB7,LINE,L1,5584,6158,-26,70741345,70747521 +1 + chr16 70755098 70755144 chr16,70754960,70755144,-,MIR3,SINE,MIR,-7,201,4,70754953,70755147 -1 - chr16 70768724 70768785 chr16,70768724,70768802,+,Charlie4z,DNA,hAT-Charlie,12,80,-87,70768713,70768889 +5 + chr16 70768846 70769114 chr16,70768802,70769114,-,AluSx,SINE,Alu,-14,298,2,70768788,70769115 -5 - chr16 70768967 70769114 chr16,70768802,70769114,-,AluSx,SINE,Alu,-14,298,2,70768788,70769115 +5 - chr16 70769114 70769172 chr16,70769114,70769172,+,Charlie4z,DNA,hAT-Charlie,81,135,-32,70769034,70769204 +6 + chr16 70769114 70769172 chr16,70769114,70769172,+,Charlie4z,DNA,hAT-Charlie,81,135,-32,70769034,70769204 -6 + chr16 70769890 70770003 chr16,70769890,70770003,+,L2,LINE,L2,2787,2909,-510,70767104,70770513 +6 + chr16 70769890 70770003 chr16,70769890,70770003,+,L2,LINE,L2,2787,2909,-510,70767104,70770513 -6 + chr16 70770007 70770413 chr16,70770007,70770413,+,L2,LINE,L2,2347,2792,-627,70767661,70771040 +1 + chr16 70770007 70770221 chr16,70770007,70770413,+,L2,LINE,L2,2347,2792,-627,70767661,70771040 -1 + chr16 70771576 70771880 chr16,70771576,70771880,-,AluJo,SINE,Alu,-2,310,1,70771574,70771880 -6 - chr16 70772477 70773248 chr16,70772477,70773248,+,L1MB8,LINE,L1,5391,6178,0,70767087,70773248 +5 + chr16 70778436 70778666 chr16,70778436,70778666,-,L1MB7,LINE,L1,-19,6165,5946,70778417,70784611 -6 - chr16 70778734 70778853 chr16,70778734,70778853,+,L1ME4a,LINE,L1,5953,6096,-28,70772782,70778881 +6 + chr16 70779035 70779109 chr16,70779035,70779109,-,tRNA-Gly-GGY,tRNA,tRNA,0,74,1,70779035,70779109 -6 - chr16 70802197 70802748 chr16,70802197,70802748,+,MLT1E1,LTR,ERVL-MaLR,5,654,0,70802193,70802748 -6 + chr16 71080866 71080981 chr16,71080652,71081152,+,MLT1D,LTR,ERVL-MaLR,5,500,-5,71080648,71081157 +1 + chr16 71087726 71087783 chr16,71087652,71087783,+,LTR89,LTR,ERVL?,758,878,-1,71086895,71087784 +2 + chr16 71090236 71090469 chr16,71090236,71090469,+,MIR,SINE,MIR,7,250,-12,71090230,71090481 +6 + chr16 71113465 71113591 chr16,71113465,71113591,-,L1MC4,LINE,L1,-333,7709,7579,71113132,71121169 -6 - chr16 71113591 71113638 chr16,71113591,71113893,-,AluJr,SINE,Alu,-10,302,1,71113581,71113893 -4 - chr16 71113805 71113893 chr16,71113591,71113893,-,AluJr,SINE,Alu,-10,302,1,71113581,71113893 -2 - chr16 71113893 71114000 chr16,71113893,71114266,-,L1MC4,LINE,L1,-464,7578,7168,71113429,71121433 -5 - chr16 71302649 71302741 chr16,71302576,71302741,-,MIRb,SINE,MIR,-52,216,39,71302524,71302779 -2 - chr16 71302765 71302869 chr16,71302765,71303359,-,MLT1F2,LTR,ERVL-MaLR,0,560,2,71302765,71303360 -5 - chr16 71414865 71414904 chr16,71414761,71414904,+,MIRb,SINE,MIR,116,265,-3,71414646,71414907 -4 + chr16 71463374 71463683 chr16,71463374,71463683,+,L2b,LINE,L2,3047,3364,-11,71460328,71463694 +6 + chr16 71464174 71464620 chr16,71464174,71464620,+,MLT1J,LTR,ERVL-MaLR,19,511,-1,71464156,71464621 +6 + chr16 71464880 71465176 chr16,71464880,71465176,+,AluSp,SINE,Alu,1,296,-17,71464880,71465193 +6 + chr16 71465560 71465650 chr16,71465560,71465650,+,L1M5,LINE,L1,4570,4659,-1487,71460991,71467137 +6 + chr16 71465670 71465941 chr16,71465670,71465952,+,AluSx,SINE,Alu,10,293,-19,71465661,71465971 +5 + chr16 71514700 71514754 chr16,71514259,71514754,-,Charlie1b,DNA,hAT-Charlie,-7,516,6,71514252,71514759 -2 - chr16 71514794 71514821 chr16,71514794,71514881,+,MIRc,SINE,MIR,72,158,-110,71514723,71514991 +4 + chr16 71541512 71541522 chr16,71541247,71541522,-,AluSx1,SINE,Alu,-39,273,1,71541208,71541522 +4 - chr16 71565789 71565888 chr16,71565726,71565888,+,L1ME4b,LINE,L1,710,881,-11,71565017,71565899 +1 + chr16 71578092 71578187 chr16,71578092,71578214,-,MER44B,DNA,TcMar-Tigger,0,550,445,71578092,71578658 -5 - chr16 71623802 71623886 chr16,71623802,71623886,+,L2a,LINE,L2,3336,3417,-9,71620467,71623895 -6 + chr16 71723716 71723749 chr16,71723695,71723749,+,(CTCG)n,Simple_repeat,Simple_repeat,1,54,0,71723695,71723749 +2 + chr16 71727854 71727992 chr16,71727854,71728152,+,AluJb,SINE,Alu,2,289,-23,71727853,71728175 +5 + chr16 71859954 71860017 chr16,71859954,71860017,+,(GTGG)n,Simple_repeat,Simple_repeat,1,63,0,71859954,71860017 +6 + chr16 71881692 71881800 chr16,71881692,71881986,+,AluSz,SINE,Alu,1,298,-14,71881692,71882000 -2 + chr16 71882096 71882273 chr16,71881995,71882296,+,AluSx,SINE,Alu,9,310,-2,71881987,71882298 -1 + chr16 72084857 72085036 chr16,72084832,72085036,-,MLT1J,LTR,ERVL-MaLR,-33,479,269,72084799,72085304 -1 - chr16 72087326 72087374 chr16,72087326,72087374,+,(TG)n,Simple_repeat,Simple_repeat,1,48,0,72087326,72087374 +6 + chr16 72224565 72224859 chr16,72224447,72224934,+,L2c,LINE,L2,2917,3368,-19,72221531,72224953 -5 + chr16 72225075 72225136 chr16,72225075,72225136,-,MIRc,SINE,MIR,-190,78,7,72224885,72225142 +6 - chr16 72291170 72291413 chr16,72291091,72291492,-,MLT1C,LTR,ERVL-MaLR,0,467,1,72291091,72291492 +3 - chr16 72426275 72426330 chr16,72426275,72426330,+,A-rich,Low_complexity,Low_complexity,1,55,0,72426275,72426330 +6 + chr16 72426275 72426330 chr16,72426275,72426330,+,A-rich,Low_complexity,Low_complexity,1,55,0,72426275,72426330 -6 + chr16 72426837 72426955 chr16,72426837,72426955,+,(TGTATA)n,Simple_repeat,Simple_repeat,1,115,0,72426837,72426955 +6 + chr16 72426837 72426955 chr16,72426837,72426955,+,(TGTATA)n,Simple_repeat,Simple_repeat,1,115,0,72426837,72426955 -6 + chr16 72426971 72427001 chr16,72426971,72427001,+,GA-rich,Low_complexity,Low_complexity,1,32,0,72426971,72427001 +6 + chr16 72426971 72427001 chr16,72426971,72427001,+,GA-rich,Low_complexity,Low_complexity,1,32,0,72426971,72427001 -6 + chr16 72428555 72428590 chr16,72428555,72428590,+,(TTTGTG)n,Simple_repeat,Simple_repeat,1,35,0,72428555,72428590 +6 + chr16 72479683 72479790 chr16,72479681,72479974,+,AluJr,SINE,Alu,3,287,-25,72479679,72479999 -5 + chr16 72522138 72522295 chr16,72521852,72522295,-,L1MC5a,LINE,L1,-1966,811,400,72519886,72522694 +5 - chr16 72522295 72522621 chr16,72522295,72522621,-,MER1B,DNA,hAT-Charlie,0,339,1,72522295,72522621 +6 - chr16 72523332 72523344 chr16,72523246,72523344,-,MLT1J1,LTR,ERVL-MaLR,-4,440,344,72523242,72523687 +5 - chr16 72532959 72533071 chr16,72532931,72533071,-,Charlie15a,DNA,hAT-Charlie,-2,222,66,72532929,72533136 -2 - chr16 72533182 72533273 chr16,72533182,72533273,-,Tigger8,DNA,TcMar-Tigger,-479,188,94,72532703,72533366 -6 - chr16 72533310 72533618 chr16,72533310,72533618,-,AluSz,SINE,Alu,-14,298,1,72533296,72533618 -6 - chr16 72533622 72533658 chr16,72533622,72533658,+,(TGTT)n,Simple_repeat,Simple_repeat,1,38,0,72533622,72533658 +6 + chr16 72533658 72533892 chr16,72533658,72533932,-,AluSx,SINE,Alu,-31,281,6,72533627,72533937 -5 - chr16 72540578 72540611 chr16,72539793,72540665,+,MER21A,LTR,ERVL,24,931,0,72539770,72540665 -3 + chr16 72555266 72555326 chr16,72555266,72555357,-,L1MD,LINE,L1,-1461,4685,4601,72553805,72559957 +2 - chr16 72561973 72562086 chr16,72561777,72562114,+,AluJo,SINE,Alu,3,304,-8,72561775,72562122 -3 + chr16 72617223 72617234 chr16,72617223,72617726,-,MLT1D,LTR,ERVL-MaLR,-7,498,2,72617216,72617727 +2 - chr16 72617339 72617553 chr16,72617223,72617726,-,MLT1D,LTR,ERVL-MaLR,-7,498,2,72617216,72617727 +3 - chr16 72627535 72627686 chr16,72627274,72633298,+,L1PA2,LINE,L1,124,6149,-6,72627151,72633304 -1 + chr16 72772673 72772695 chr16,72771929,72772695,+,LTR12,LTR,ERV1,1,826,0,72771929,72772695 +1 + chr16 72772695 72772948 chr16,72772695,72772948,-,L1MEg,LINE,L1,-5505,1532,1304,72767190,72774251 -6 - chr16 72773024 72773272 chr16,72773024,72773340,-,L1MC5,LINE,L1,-281,9023,8719,72772743,72782058 -5 - chr16 72787694 72787758 chr16,72787694,72787758,+,(GCC)n,Simple_repeat,Simple_repeat,1,64,0,72787694,72787758 +6 + chr16 72788089 72788193 chr16,72788089,72788193,+,(GCT)n,Simple_repeat,Simple_repeat,1,105,0,72788089,72788193 +6 + chr16 72788519 72788579 chr16,72788519,72788579,+,(TTTCCT)n,Simple_repeat,Simple_repeat,1,61,0,72788519,72788579 +6 + chr16 72788583 72788687 chr16,72788583,72788687,+,(TGC)n,Simple_repeat,Simple_repeat,1,106,0,72788583,72788687 +6 + chr16 72790934 72791007 chr16,72790934,72791007,-,L2b,LINE,L2,-9,3366,3294,72790925,72794300 -6 - chr16 72791195 72791278 chr16,72791195,72791278,+,MIRb,SINE,MIR,174,252,-16,72791022,72791294 +6 + chr16 72791471 72791605 chr16,72791471,72791605,+,MIRc,SINE,MIR,12,156,-112,72791460,72791717 +6 + chr16 72805998 72806032 chr16,72805880,72806157,-,AluJo,SINE,Alu,-1,311,42,72805879,72806198 -1 - chr16 72973596 72973832 chr16,72973596,72973882,+,AluSx1,SINE,Alu,1,292,-20,72973596,72973902 -1 + chr16 73005601 73005801 chr16,73005511,73005801,+,AluY,SINE,Alu,1,293,-18,73005511,73005819 -5 + chr16 73005801 73005839 chr16,73005801,73005839,+,MIRb,SINE,MIR,213,248,-20,73005589,73005859 -6 + chr16 73015047 73015345 chr16,73015040,73015345,-,AluJb,SINE,Alu,-6,306,1,73015034,73015345 +5 - chr16 73060494 73060539 chr16,73060494,73060539,+,(TC)n,Simple_repeat,Simple_repeat,1,47,0,73060494,73060539 +6 + chr16 73061355 73061390 chr16,73061355,73061390,+,(T)n,Simple_repeat,Simple_repeat,1,35,0,73061355,73061390 +6 + chr16 73131002 73131094 chr16,73131002,73131196,+,MIR,SINE,MIR,24,239,-29,73130979,73131225 -2 + chr16 73293986 73294013 chr16,73293986,73294013,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,73293986,73294013 -6 + chr16 73389177 73389241 chr16,73389177,73389384,+,MER58A,DNA,hAT-Charlie,1,223,-1,73389177,73389385 +5 + chr16 73400139 73400229 chr16,73400051,73400229,-,MIRc,SINE,MIR,-8,200,38,73400043,73400266 -2 - chr16 73400689 73400714 chr16,73400689,73400714,+,(AAAC)n,Simple_repeat,Simple_repeat,1,25,0,73400689,73400714 +6 + chr16 73401371 73401407 chr16,73401371,73401407,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,73401371,73401407 +6 + chr16 73401598 73401727 chr16,73401598,73401727,+,MIRc,SINE,MIR,140,268,0,73401459,73401727 +6 + chr16 73402331 73402480 chr16,73402331,73402599,-,MER5C1,DNA,hAT-Charlie,-3,260,1,73402328,73402599 -5 - chr16 73420093 73420207 chr16,73419908,73420207,-,AluJb,SINE,Alu,-14,298,1,73419894,73420207 -2 - chr16 73483317 73483369 chr16,73483298,73483369,+,(GAGA)n,Simple_repeat,Simple_repeat,1,71,0,73483298,73483369 +1 + chr16 73487428 73487703 chr16,73487408,73487703,-,AluJo,SINE,Alu,-16,296,2,73487392,73487704 -2 - chr16 73487703 73487744 chr16,73487703,73488126,+,MLT1H2,LTR,ERVL-MaLR,58,489,0,73487646,73488126 +5 + chr16 73511176 73511336 chr16,73511118,73511336,+,LTR16E2,LTR,ERVL,285,501,-67,73510834,73511403 +1 + chr16 73511541 73511654 chr16,73511541,73511919,+,ERVL-E-int,LTR,ERVL,268,653,-4343,73511274,73516262 +5 + chr16 73543941 73543988 chr16,73543844,73543988,+,GA-rich,Low_complexity,Low_complexity,1,149,0,73543844,73543988 +1 + chr16 73812621 73812639 chr16,73812520,73812639,+,MER102c,DNA,hAT-Charlie,207,328,-3,73812314,73812642 +1 + chr16 73815588 73815688 chr16,73815555,73815860,-,AluSx,SINE,Alu,-5,307,5,73815550,73815864 -3 - chr16 74054200 74054351 chr16,74054200,74054351,+,L2a,LINE,L2,3243,3426,0,74050958,74054351 -6 + chr16 74150900 74151101 chr16,74150900,74151101,+,LTR33B,LTR,ERVL,47,229,-391,74150854,74151492 +6 + chr16 74151176 74151258 chr16,74151176,74151258,+,LTR33B,LTR,ERVL,405,494,-26,74150772,74151284 +6 + chr16 74151285 74151299 chr16,74151285,74152230,-,L1ME3E,LINE,L1,-3304,3015,1992,74147981,74154221 -5 - chr16 74192392 74192726 chr16,74192324,74192811,-,LTR72B,LTR,ERV1,0,500,1,74192324,74192811 +5 - chr16 74206133 74206165 chr16,74206133,74206255,+,MamRep605,LTR?,LTR?,12,134,-715,74206122,74206970 -2 + chr16 74215352 74215416 chr16,74215126,74215416,-,AluSz,SINE,Alu,0,312,1,74215126,74215416 +4 - chr16 74215416 74215484 chr16,74215416,74215484,-,MLT1H,LTR,ERVL-MaLR,-450,99,42,74214966,74215525 +6 - chr16 74282415 74282438 chr16,74282387,74282692,-,AluSx,SINE,Alu,-6,306,1,74282381,74282692 -1 - chr16 74287069 74287096 chr16,74286808,74287096,+,AluSx1,SINE,Alu,1,299,-13,74286808,74287109 +2 + chr16 74287270 74287345 chr16,74287270,74287345,+,AluJr,SINE,Alu,50,124,-188,74287221,74287533 +6 + chr16 74287411 74287519 chr16,74287411,74287716,+,AluSz,SINE,Alu,2,306,-6,74287410,74287722 +5 + chr16 74290098 74290238 chr16,74290098,74290238,+,L1ME4a,LINE,L1,5976,6118,-6,74284123,74290244 -6 + chr16 74290308 74290585 chr16,74290308,74290585,-,AluJr,SINE,Alu,-11,301,44,74290297,74290628 +6 - chr16 74290817 74290923 chr16,74290817,74290923,-,FLAM_A,SINE,Alu,-15,127,1,74290802,74290923 +6 - chr16 74306433 74306489 chr16,74306433,74306489,+,MIRc,SINE,MIR,3,63,-205,74306431,74306694 -6 + chr16 74306488 74306550 chr16,74306488,74306550,+,MIR3,SINE,MIR,113,175,-33,74306376,74306583 -6 + chr16 74306952 74307163 chr16,74306952,74307163,-,Tigger4a,DNA,TcMar-Tigger,-1,235,1,74306951,74307163 +6 - chr16 74307656 74307770 chr16,74307656,74307945,+,AluJr4,SINE,Alu,1,294,-18,74307656,74307963 -1 + chr16 74310277 74310307 chr16,74310277,74310574,-,AluJb,SINE,Alu,-14,298,1,74310263,74310574 +1 - chr16 74315430 74315610 chr16,74315430,74315610,-,L1ME5,LINE,L1,-16,6178,5988,74315414,74321597 -6 - chr16 74368743 74368995 chr16,74368743,74368995,+,L2b,LINE,L2,3088,3336,-39,74365656,74369034 +6 + chr16 74369138 74369269 chr16,74369138,74369269,-,FLAM_C,SINE,Alu,-10,133,1,74369128,74369269 -6 - chr16 74369280 74369381 chr16,74369280,74369381,-,L2a,LINE,L2,-20,3406,3302,74369260,74372682 -6 - chr16 74369468 74369561 chr16,74369468,74369561,-,L3,LINE,CR1,-509,3590,3492,74368959,74373052 -6 - chr16 74434443 74434511 chr16,74434197,74434511,-,THE1C,LTR,ERVL-MaLR,-50,325,5,74434147,74434515 -2 - chr16 74434657 74434699 chr16,74434657,74434961,-,AluSc8,SINE,Alu,-7,304,1,74434650,74434961 -5 - chr16 74435170 74435254 chr16,74434968,74435369,-,HAL1,LINE,L1,0,2507,2077,74434968,74437445 -5 - chr16 74448274 74448320 chr16,74448274,74448320,-,L2c,LINE,L2,-70,3317,3272,74448204,74451591 +6 - chr16 74448509 74448769 chr16,74448509,74448769,+,AluSx,SINE,Alu,43,301,-11,74448467,74448780 -6 + chr16 74448774 74448824 chr16,74448774,74448824,+,Alu,SINE,Alu,1,54,-79,74448774,74448903 -6 + chr16 74448854 74449124 chr16,74448854,74449124,+,AluSc5,SINE,Alu,35,304,-5,74448820,74449129 -6 + chr16 75109236 75109277 chr16,75109236,75109277,+,G-rich,Low_complexity,Low_complexity,1,43,0,75109236,75109277 -6 + chr16 75109617 75109777 chr16,75109617,75109777,+,MIRb,SINE,MIR,5,186,-82,75109613,75109859 -6 + chr16 75110461 75110708 chr16,75110461,75110708,+,L1ME2z,LINE,L1,6319,6442,-2,75104143,75110710 -6 + chr16 75119558 75119582 chr16,75119199,75119791,+,MER4-int,LTR,ERV1,1,686,-5912,75119199,75125703 +1 + chr16 75126176 75126312 chr16,75126149,75126412,-,AluSc,SINE,Alu,-11,298,36,75126138,75126447 -3 - chr16 75127831 75127951 chr16,75127620,75128780,+,MER4-int,LTR,ERV1,5110,6313,-285,75122511,75129065 +3 + chr16 75132515 75132622 chr16,75132515,75132648,+,MER3,DNA,hAT-Charlie,5,141,-68,75132511,75132716 +4 + chr16 75245994 75246269 chr16,75245964,75246269,-,AluJb,SINE,Alu,0,312,2,75245964,75246270 +5 - chr16 75246274 75246593 chr16,75246274,75246593,-,L2b,LINE,L2,-2,3373,3021,75246272,75249613 +6 - chr16 75246807 75246893 chr16,75246807,75246893,+,MLT1N2,LTR,ERVL-MaLR,109,197,-365,75246699,75247258 -6 + chr16 75248002 75248144 chr16,75248002,75248144,-,MIRb,SINE,MIR,-61,207,54,75247941,75248197 +6 - chr16 75248283 75248322 chr16,75248283,75248322,+,L2b,LINE,L2,3317,3355,-20,75244967,75248342 -6 + chr16 75249924 75250027 chr16,75249924,75250027,+,MIR1_Amn,SINE,MIR,94,189,-19,75249831,75250046 -6 + chr16 75321890 75321933 chr16,75321820,75322123,-,AluY,SINE,Alu,-9,302,1,75321811,75322123 +5 - chr16 75324666 75324761 chr16,75324459,75324761,+,AluSx1,SINE,Alu,1,301,-11,75324459,75324772 -4 + chr16 75325033 75325048 chr16,75325033,75325247,+,L2a,LINE,L2,2243,2539,-880,75322791,75326127 -1 + chr16 75379818 75379830 chr16,75379574,75379830,+,L1MD1,LINE,L1,5965,6238,-4,75373610,75379834 -5 + chr16 75379856 75380134 chr16,75379856,75380158,+,AluSz,SINE,Alu,2,303,-9,75379855,75380167 -2 + chr16 75381204 75381260 chr16,75381181,75381306,+,AluJr,SINE,Alu,1,125,-187,75381181,75381493 -1 + chr16 75433836 75434907 chr16,75433678,75434907,+,Tigger17,DNA,TcMar-Tigger,1,1199,-1474,75433678,75436381 +1 + chr16 75434907 75435211 chr16,75434907,75435211,-,AluY,SINE,Alu,-6,305,2,75434901,75435212 -6 - chr16 75435211 75436389 chr16,75435211,75436389,+,Tigger17,DNA,TcMar-Tigger,1200,2379,-294,75434012,75436683 +6 + chr16 75458288 75458739 chr16,75458288,75458739,+,MLT1D,LTR,ERVL-MaLR,1,493,-12,75458288,75458751 -6 + chr16 75458895 75458975 chr16,75458895,75459193,-,AluSx,SINE,Alu,-12,300,1,75458883,75459193 +2 - chr16 75475896 75476145 chr16,75475862,75476145,-,AluSz,SINE,Alu,-29,283,2,75475833,75476146 -1 - chr16 75476150 75476269 chr16,75476150,75476269,+,MLT1A0,LTR,ERVL-MaLR,41,149,-216,75476110,75476485 +6 + chr16 75476269 75476320 chr16,75476269,75476585,+,AluSz,SINE,Alu,1,307,-5,75476269,75476590 +4 + chr16 75498133 75498260 chr16,75498133,75498260,+,FLAM_C,SINE,Alu,5,130,-13,75498129,75498273 -6 + chr16 75556523 75557059 chr16,75556523,75557111,+,LTR66,LTR,ERVL,1,609,-1,75556523,75557112 +5 + chr16 75838856 75838885 chr16,75838856,75838885,+,(CTC)n,Simple_repeat,Simple_repeat,1,29,0,75838856,75838885 -6 + chr16 75851427 75851622 chr16,75850969,75851660,-,L1MD1,LINE,L1,-4080,2553,1883,75846889,75853542 +3 - chr16 76107321 76107430 chr16,76107321,76107430,+,LTR85a,LTR,Gypsy?,20,132,-570,76107302,76108000 -6 + chr16 76140374 76140403 chr16,76140374,76140685,-,LTR31,LTR,ERV1,-1,618,309,76140373,76140993 +2 - chr16 76147674 76147806 chr16,76147674,76148273,+,MLT1E1A,LTR,ERVL-MaLR,8,678,-2,76147667,76148275 -1 + chr16 76582601 76582899 chr16,76582601,76582899,+,AluSz,SINE,Alu,1,298,-14,76582601,76582913 +6 + chr16 76635497 76635600 chr16,76635380,76635600,-,MLT1E1A,LTR,ERVL-MaLR,-320,240,4,76635060,76635603 -2 - chr16 76657436 76657867 chr16,76657436,76657867,+,MLT1F2,LTR,ERVL-MaLR,1,451,-109,76657436,76657976 +6 + chr16 76657889 76657972 chr16,76657889,76657972,+,AluJr,SINE,Alu,1,83,-229,76657889,76658201 +6 + chr16 76658193 76658478 chr16,76658193,76658486,+,L1PA16,LINE,L1,5844,6164,-1,76652350,76658487 +5 + chr16 76736455 76736479 chr16,76736455,76736569,-,L2,LINE,L2,-504,2915,2805,76735951,76739373 -4 - chr16 77105185 77105297 chr16,77105185,77105474,+,AluY,SINE,Alu,21,292,-19,77105165,77105493 +5 + chr16 77201767 77201827 chr16,77201767,77201827,+,(AATTT)n,Simple_repeat,Simple_repeat,1,60,0,77201767,77201827 -6 + chr16 77234877 77234949 chr16,77234651,77235030,+,MSTA,LTR,ERVL-MaLR,1,428,0,77234651,77235030 +1 + chr16 77249894 77249957 chr16,77249736,77250035,+,AluSx1,SINE,Alu,1,299,-13,77249736,77250048 -1 + chr16 77599085 77599243 chr16,77599072,77599433,+,L1MEf,LINE,L1,27,398,-6149,77599046,77605582 +3 + chr16 77610537 77610673 chr16,77610051,77610673,+,L1MD2,LINE,L1,5741,6349,-10,77604311,77610683 +2 + chr16 77657174 77657359 chr16,77656914,77657359,+,MLT1K,LTR,ERVL-MaLR,10,450,-145,77656905,77657504 +1 + chr16 77657359 77657729 chr16,77657359,77657729,-,THE1D,LTR,ERVL-MaLR,-1,380,1,77657358,77657729 -6 - chr16 77657729 77657790 chr16,77657729,77657790,+,MLT1K,LTR,ERVL-MaLR,451,511,-84,77657279,77657874 +6 + chr16 77657965 77658053 chr16,77657965,77658053,+,MIR,SINE,MIR,31,125,-143,77657935,77658196 +6 + chr16 77658135 77658154 chr16,77658135,77658154,+,(ATT)n,Simple_repeat,Simple_repeat,1,19,0,77658135,77658154 +6 + chr16 77658154 77658443 chr16,77658154,77658443,-,AluSx,SINE,Alu,-23,289,1,77658131,77658443 -6 - chr16 77658901 77659016 chr16,77658901,77659016,+,MER113,DNA,hAT-Charlie,3,105,-416,77658899,77659432 +6 + chr16 77659018 77659144 chr16,77659018,77659144,+,THE1D,LTR,ERVL-MaLR,217,349,-32,77658802,77659176 +6 + chr16 77659144 77659215 chr16,77659144,77659215,+,(CTTT)n,Simple_repeat,Simple_repeat,1,75,0,77659144,77659215 +6 + chr16 77659215 77659232 chr16,77659215,77659232,+,THE1D,LTR,ERVL-MaLR,296,314,-41,77658920,77659273 +6 + chr16 77659232 77659522 chr16,77659232,77659522,-,AluSx,SINE,Alu,-1,311,1,77659231,77659522 -6 - chr16 77659522 77659560 chr16,77659522,77659560,+,THE1D,LTR,ERVL-MaLR,315,381,0,77659208,77659560 +6 + chr16 77659662 77659977 chr16,77659662,77659977,+,MER113,DNA,hAT-Charlie,172,501,-20,77659491,77659997 +6 + chr16 77742843 77743000 chr16,77742699,77743166,+,MLT1J,LTR,ERVL-MaLR,1,479,-33,77742699,77743199 -1 + chr16 77800828 77801128 chr16,77800828,77801128,-,AluSx,SINE,Alu,-12,300,1,77800816,77801128 -6 - chr16 77801462 77801576 chr16,77801462,77801576,-,LTR88c,LTR,Gypsy?,-682,180,73,77800780,77801648 -6 - chr16 78059414 78059454 chr16,78058572,78060150,-,HERVE-int,LTR,ERV1,-6239,1574,1,78052333,78060150 +1 - chr16 78123416 78123752 chr16,78123416,78123752,-,AluSg7,SINE,Alu,0,309,4,78123416,78123755 -6 - chr16 78166717 78166856 chr16,78166547,78166856,-,AluSc,SINE,Alu,0,309,1,78166547,78166856 +5 - chr16 78167223 78167334 chr16,78167223,78167334,+,MIR3,SINE,MIR,60,174,-34,78167164,78167368 -6 + chr16 78167498 78167533 chr16,78167498,78167533,+,A-rich,Low_complexity,Low_complexity,1,36,0,78167498,78167533 -6 + chr16 78168431 78168451 chr16,78168431,78168451,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,78168431,78168451 -6 + chr16 78168452 78168514 chr16,78168452,78168598,-,MIRb,SINE,MIR,-119,149,2,78168333,78168599 +1 - chr16 78237587 78237682 chr16,78237587,78237914,+,MER58D,DNA,hAT-Charlie,1,386,0,78237587,78237914 -2 + chr16 78238151 78238188 chr16,78238151,78238296,+,MER46C,DNA,TcMar-Tigger,8,162,-176,78238144,78238472 -2 + chr16 78525189 78525484 chr16,78525173,78525484,-,AluY,SINE,Alu,0,311,1,78525173,78525484 +5 - chr16 78525845 78525862 chr16,78525845,78525862,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,78525845,78525862 -6 + chr16 78526497 78526535 chr16,78526497,78526775,-,MER45C,DNA,hAT-Tip100,-320,633,310,78526177,78527084 +1 - chr16 78552718 78552768 chr16,78552718,78552768,+,(TTATTCT)n,Simple_repeat,Simple_repeat,1,50,0,78552718,78552768 -6 + chr16 78552751 78552793 chr16,78552751,78552793,+,(TTCC)n,Simple_repeat,Simple_repeat,1,45,0,78552751,78552793 -6 + chr16 78552803 78552987 chr16,78552803,78552987,-,MER74A,LTR,ERVL,0,558,365,78552803,78553351 +6 - chr16 78552987 78553283 chr16,78552987,78553283,+,L1PA10,LINE,L1,5854,6151,-17,78547134,78553300 -6 + chr16 78553283 78553296 chr16,78553283,78553573,-,MER74A,LTR,ERVL,-194,364,84,78553089,78553656 +1 - chr16 78872788 78873096 chr16,78872788,78873096,-,AluJr,SINE,Alu,-5,307,1,78872783,78873096 -6 - chr16 78873125 78873247 chr16,78873125,78873247,+,L1ME3A,LINE,L1,6045,6170,-3,78867081,78873250 +6 + chr16 78890246 78890277 chr16,78890246,78890277,+,A-rich,Low_complexity,Low_complexity,1,31,0,78890246,78890277 +6 + chr16 78890645 78890952 chr16,78890645,78890952,-,MER113A,DNA,hAT-Charlie,0,314,1,78890645,78890952 -6 - chr16 78896412 78896601 chr16,78896412,78896601,-,MIRb,SINE,MIR,-54,214,21,78896358,78896621 -6 - chr16 78896807 78896945 chr16,78896807,78896945,-,L1ME2,LINE,L1,-4,6160,6052,78896803,78902996 -6 - chr16 78896945 78897266 chr16,78896945,78897266,+,AluSz,SINE,Alu,1,309,-3,78896945,78897269 +6 + chr16 78897266 78899276 chr16,78897266,78899276,-,L1ME2,LINE,L1,-113,6051,3938,78897153,78903213 -6 - chr16 78899441 78899518 chr16,78899441,78899518,+,MIR,SINE,MIR,189,268,0,78899253,78899518 +6 + chr16 79004149 79004269 chr16,79004106,79004269,+,L2a,LINE,L2,3268,3425,-1,79000839,79004270 +2 + chr16 79016411 79016721 chr16,79016411,79016721,-,AluSz6,SINE,Alu,-1,311,2,79016410,79016722 -6 - chr16 79016911 79016998 chr16,79016911,79016998,-,AluSx,SINE,Alu,-224,88,1,79016687,79016998 -6 - chr16 79017149 79017429 chr16,79017149,79017459,+,AluY,SINE,Alu,2,311,0,79017148,79017459 +5 + chr16 79105957 79105972 chr16,79105654,79105972,-,AluJb,SINE,Alu,-4,308,1,79105650,79105972 -1 - chr16 79106622 79106760 chr16,79106622,79106797,-,AluJo,SINE,Alu,-37,275,127,79106585,79106923 -4 - chr16 79110756 79110882 chr16,79110756,79110916,+,MIRb,SINE,MIR,28,199,-69,79110729,79110985 +5 + chr16 79203495 79203515 chr16,79203495,79203515,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,79203495,79203515 -6 + chr16 79206392 79206576 chr16,79206392,79206576,+,MIR,SINE,MIR,76,259,-3,79206317,79206579 -6 + chr16 79212711 79212721 chr16,79212676,79212721,+,(GTTT)n,Simple_repeat,Simple_repeat,1,47,0,79212676,79212721 -5 + chr16 79604060 79604088 chr16,79604060,79604088,+,(ATCCA)n,Simple_repeat,Simple_repeat,1,28,0,79604060,79604088 +6 + chr16 79619469 79619493 chr16,79619326,79619493,+,MLT1L,LTR,ERVL-MaLR,416,604,-6,79618911,79619499 +1 + chr16 79619551 79619680 chr16,79619551,79619680,+,L2c,LINE,L2,3195,3337,-50,79616357,79619730 +6 + chr16 79675691 79675985 chr16,79675691,79675985,-,AluYh3a3,SINE,Alu,0,292,1,79675691,79675985 +6 - chr16 79676110 79676208 chr16,79676110,79676240,+,MIRc,SINE,MIR,2,132,-136,79676109,79676376 +4 + chr16 79676110 79676240 chr16,79676110,79676240,+,MIRc,SINE,MIR,2,132,-136,79676109,79676376 -6 + chr16 79676370 79676432 chr16,79676370,79676432,+,(TCT)n,Simple_repeat,Simple_repeat,1,62,0,79676370,79676432 -6 + chr16 79676581 79676743 chr16,79676581,79676743,+,L2a,LINE,L2,2712,2892,-527,79673870,79677270 -6 + chr16 79676852 79676916 chr16,79676852,79676916,+,L2a,LINE,L2,3096,3160,-215,79673757,79677131 -6 + chr16 79677004 79677037 chr16,79677004,79677037,+,(TTAACAA)n,Simple_repeat,Simple_repeat,1,31,0,79677004,79677037 -6 + chr16 79677037 79677329 chr16,79677037,79677329,+,AluSz,SINE,Alu,1,301,-11,79677037,79677340 -6 + chr16 79677356 79677493 chr16,79677356,79677493,+,L2a,LINE,L2,3280,3424,-2,79674077,79677495 -6 + chr16 79713836 79714134 chr16,79713630,79714203,+,MLT1F2,LTR,ERVL-MaLR,1,558,-2,79713630,79714205 +1 + chr16 79715801 79715927 chr16,79715801,79715927,+,MIRb,SINE,MIR,3,150,-118,79715799,79716045 -6 + chr16 79716165 79716401 chr16,79716165,79716401,+,AluJb,SINE,Alu,1,230,-82,79716165,79716483 -6 + chr16 79716414 79716495 chr16,79716414,79716495,+,MADE1,DNA,TcMar-Mariner,1,80,0,79716414,79716495 -6 + chr16 79716497 79716556 chr16,79716497,79716556,+,AluJb,SINE,Alu,241,299,-3,79716257,79716559 -6 + chr16 79716557 79716679 chr16,79716557,79716679,+,MIR,SINE,MIR,23,167,-95,79716535,79716774 -6 + chr16 79740211 79740237 chr16,79740211,79740241,+,(TTCCAT)n,Simple_repeat,Simple_repeat,1,31,0,79740211,79740241 -2 + chr16 79750963 79751276 chr16,79750963,79751451,+,MLT1D,LTR,ERVL-MaLR,5,497,-8,79750959,79751459 -2 + chr16 79757651 79757715 chr16,79757545,79757896,+,LTR104_Mam,LTR,Gypsy,44,387,-1122,79757502,79759018 -3 + chr16 79770189 79770225 chr16,79770189,79770225,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,79770189,79770225 -6 + chr16 79770261 79770283 chr16,79770261,79770283,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,79770261,79770283 -6 + chr16 79770539 79770563 chr16,79770539,79770583,+,(CCCGC)n,Simple_repeat,Simple_repeat,1,44,0,79770539,79770583 -1 + chr16 79798050 79798331 chr16,79798049,79798331,-,AluSg,SINE,Alu,-17,293,1,79798032,79798331 +5 - chr16 79798601 79798836 chr16,79798601,79798836,-,MIRc,SINE,MIR,-2,260,31,79798599,79798866 -6 - chr16 79798993 79799090 chr16,79798993,79799654,-,L1MA7,LINE,L1,-1,6290,5625,79798992,79805278 -5 - chr16 79807502 79807922 chr16,79807502,79807973,+,LTR72B,LTR,ERV1,7,486,-14,79807496,79807987 +5 + chr16 80045348 80045444 chr16,80045220,80045444,-,MIR,SINE,MIR,-19,243,21,80045201,80045464 -2 - chr16 80045466 80045584 chr16,80045466,80045584,+,MIRb,SINE,MIR,46,170,-98,80045421,80045682 +6 + chr16 80065865 80066021 chr16,80065865,80066021,+,L4_C_Mam,LINE,RTE-X,4799,4969,-169,80061067,80066190 +6 + chr16 80155604 80155717 chr16,80155604,80155717,+,MIRb,SINE,MIR,35,147,-121,80155570,80155838 -6 + chr16 80155729 80156007 chr16,80155729,80156007,+,AluSz,SINE,Alu,1,274,-38,80155729,80156045 -2 + chr16 80156245 80156375 chr16,80156245,80156571,-,L2b,LINE,L2,-16,3359,3027,80156229,80159597 -4 - chr16 80157631 80157655 chr16,80157543,80158003,-,MLT1C,LTR,ERVL-MaLR,0,467,1,80157543,80158003 -5 - chr16 80157614 80157682 chr16,80157543,80158003,-,MLT1C,LTR,ERVL-MaLR,0,467,1,80157543,80158003 +5 - chr16 80159337 80159455 chr16,80159195,80159470,+,AluJr,SINE,Alu,1,290,-22,80159195,80159492 -3 + chr16 80160232 80160306 chr16,80160168,80160371,+,L1ME3A,LINE,L1,5972,6165,-8,80154197,80160379 -3 + chr16 80179129 80179237 chr16,80179084,80179237,-,L2c,LINE,L2,-17,3370,3205,80179067,80182441 -1 - chr16 80180268 80180560 chr16,80180214,80180560,+,L2a,LINE,L2,3066,3420,-6,80177149,80180566 +2 + chr16 80218809 80218866 chr16,80218733,80218946,+,MLT1A,LTR,ERVL-MaLR,179,373,-1,80218555,80218947 -3 + chr16 80491217 80491295 chr16,80491186,80491295,+,L2a,LINE,L2,3052,3148,-239,80488135,80491534 -4 + chr16 80491295 80491354 chr16,80491295,80491354,-,MLT1K,LTR,ERVL-MaLR,-15,580,525,80491280,80491878 +6 - chr16 80491388 80491541 chr16,80491388,80491541,-,MLT1K,LTR,ERVL-MaLR,-71,524,377,80491317,80491917 +6 - chr16 80492655 80492714 chr16,80492655,80492714,-,MIRc,SINE,MIR,-121,147,83,80492534,80492796 +6 - chr16 80552498 80552514 chr16,80552498,80552704,+,MIRb,SINE,MIR,12,262,-6,80552487,80552710 -1 + chr16 80563029 80563089 chr16,80562970,80563089,+,MIRb,SINE,MIR,19,154,-114,80562952,80563203 -4 + chr16 80566794 80566820 chr16,80566620,80566820,+,L1MB7,LINE,L1,5949,6169,-15,80560672,80566835 -5 + chr16 80567253 80567372 chr16,80567253,80567372,-,MIRc,SINE,MIR,-66,202,99,80567187,80567470 +6 - chr16 80567555 80567641 chr16,80567529,80567641,+,LTR85a,LTR,Gypsy?,283,408,-294,80567247,80567935 -5 + chr16 80567648 80567700 chr16,80567648,80567700,+,(TTTGTT)n,Simple_repeat,Simple_repeat,1,52,0,80567648,80567700 -5 + chr16 80567948 80568059 chr16,80567933,80568059,+,L2c,LINE,L2,3260,3387,0,80564674,80568059 -4 + chr16 80569187 80569242 chr16,80569187,80569242,-,MIRc,SINE,MIR,-129,139,81,80569058,80569322 +6 - chr16 80572648 80572808 chr16,80572648,80573287,+,L2a,LINE,L2,2728,3426,0,80569921,80573287 -1 + chr16 80627649 80628005 chr16,80627649,80628005,-,Tigger15a,DNA,TcMar-Tigger,-131,584,179,80627518,80628183 +6 - chr16 80628227 80628379 chr16,80628227,80628691,+,MLT1F2,LTR,ERVL-MaLR,42,560,0,80628186,80628691 -1 + chr16 80738661 80738748 chr16,80738414,80738796,+,L1MB7,LINE,L1,5796,6182,-2,80732619,80738798 +3 + chr16 80742098 80742212 chr16,80741997,80742212,-,MIR,SINE,MIR,-19,243,12,80741978,80742223 -2 - chr16 80828935 80829035 chr16,80828935,80829035,-,MIR,SINE,MIR,-92,170,75,80828843,80829109 +6 - chr16 80829939 80830253 chr16,80829939,80830253,-,Tigger15a,DNA,TcMar-Tigger,-50,665,336,80829889,80830588 +6 - chr16 80830388 80830698 chr16,80830388,80830698,-,MLT1C,LTR,ERVL-MaLR,-92,375,54,80830296,80830751 +5 - chr16 80835657 80835789 chr16,80835619,80835960,-,THE1A,LTR,ERVL-MaLR,0,355,1,80835619,80835960 +1 - chr16 80837947 80838045 chr16,80837947,80838162,-,L2a,LINE,L2,-2,3424,3129,80837945,80841290 +2 - chr16 80870448 80870520 chr16,80869665,80870842,+,L1MD2,LINE,L1,4277,5504,-896,80865389,80871738 -1 + chr16 80892505 80892595 chr16,80892421,80892788,-,THE1B,LTR,ERVL-MaLR,0,364,1,80892421,80892788 +1 - chr16 80982319 80982539 chr16,80982221,80982539,+,AluSg7,SINE,Alu,1,307,-2,80982221,80982541 -5 + chr16 80982539 80983318 chr16,80982539,80983318,+,Tigger2b_Pri,DNA,TcMar-Tigger,193,1067,-1,80982347,80983319 -6 + chr16 80983705 80984002 chr16,80983705,80984002,+,AluSp,SINE,Alu,7,304,-9,80983699,80984011 -6 + chr16 81016792 81017017 chr16,81016768,81017017,-,L2a,LINE,L2,-174,3252,3014,81016594,81020030 +5 - chr16 81020398 81020501 chr16,81020376,81020521,+,FRAM,SINE,Alu,1,165,-11,81020376,81020532 -3 + chr16 81023408 81023523 chr16,81023408,81023538,+,FLAM_C,SINE,Alu,1,130,-13,81023408,81023551 -2 + chr16 81024055 81024090 chr16,81023799,81024090,+,AluY,SINE,Alu,2,291,-20,81023798,81024110 -5 + chr16 81024090 81024252 chr16,81024090,81024252,+,AluJb,SINE,Alu,135,295,-17,81023956,81024269 -6 + chr16 81030770 81031076 chr16,81030763,81031076,+,AluSg,SINE,Alu,1,308,-2,81030763,81031078 +1 + chr16 81031076 81031485 chr16,81031076,81031518,+,LTR06,LTR,ERV1,22,475,-1,81031055,81031519 +5 + chr16 81034755 81034926 chr16,81034612,81034999,+,MLT1D,LTR,ERVL-MaLR,110,505,0,81034503,81034999 -3 + chr16 81055415 81055462 chr16,81055415,81055703,+,AluJb,SINE,Alu,5,293,-19,81055411,81055722 +4 + chr16 81055996 81056017 chr16,81055716,81056017,-,AluSz,SINE,Alu,-9,303,1,81055707,81056017 -2 - chr16 81056414 81056426 chr16,81056414,81056717,+,AluSx1,SINE,Alu,2,304,-8,81056413,81056725 +5 + chr16 81057905 81058030 chr16,81057749,81058030,+,AluSc8,SINE,Alu,1,281,-30,81057749,81058060 -4 + chr16 81058030 81058064 chr16,81058030,81058064,+,(AAACA)n,Simple_repeat,Simple_repeat,1,34,0,81058030,81058064 -2 + chr16 81069854 81069941 chr16,81069844,81070139,+,AluSg7,SINE,Alu,3,294,-15,81069842,81070154 +1 + chr16 81071998 81072224 chr16,81071893,81072224,+,MLT1J1,LTR,ERVL-MaLR,66,401,-10,81071828,81072234 +1 + chr16 81077826 81077876 chr16,81077826,81078111,+,AluSq,SINE,Alu,1,291,-22,81077826,81078133 +4 + chr16 81078345 81078489 chr16,81078345,81078489,+,AluJo,SINE,Alu,137,290,-22,81078209,81078511 +6 + chr16 81078490 81078546 chr16,81078490,81078546,-,Charlie2b,DNA,hAT-Charlie,-1007,1775,1719,81077483,81080264 -6 - chr16 81078561 81078622 chr16,81078561,81078622,-,Charlie2b,DNA,hAT-Charlie,-2661,121,62,81075900,81078683 -6 - chr16 81078788 81078853 chr16,81078788,81078853,+,L1MC1,LINE,L1,6268,6332,-1,81072521,81078854 +6 + chr16 81261924 81262021 chr16,81261743,81262021,-,AluYk3,SINE,Alu,-14,297,21,81261729,81262041 +5 - chr16 81262446 81262478 chr16,81262446,81262478,+,L2c,LINE,L2,3302,3333,-54,81259145,81262532 -6 + chr16 81262478 81262545 chr16,81262478,81262545,-,MLT1C,LTR,ERVL-MaLR,0,467,416,81262478,81262960 +6 - chr16 81262545 81262856 chr16,81262545,81262856,+,AluSx,SINE,Alu,1,312,0,81262545,81262856 -6 + chr16 81262856 81263108 chr16,81262856,81263108,-,MLT1C,LTR,ERVL-MaLR,-52,415,182,81262804,81263289 +6 - chr16 81263108 81263390 chr16,81263108,81263390,-,AluSc8,SINE,Alu,-10,301,1,81263098,81263390 +6 - chr16 81263390 81263570 chr16,81263390,81263570,-,MLT1C,LTR,ERVL-MaLR,-286,181,2,81263104,81263571 +6 - chr16 81263570 81263623 chr16,81263570,81263623,+,L2c,LINE,L2,3334,3385,-2,81260237,81263625 -6 + chr16 81310850 81310914 chr16,81310850,81310914,+,L2c,LINE,L2,3322,3385,-2,81307529,81310916 -6 + chr16 81311494 81311678 chr16,81311494,81311678,+,MER102b,DNA,hAT-Charlie,74,267,-64,81311421,81311742 -6 + chr16 81311733 81312021 chr16,81311733,81312021,-,L2b,LINE,L2,-15,3360,3073,81311718,81315093 +6 - chr16 81312456 81312726 chr16,81312456,81312726,-,AluSg,SINE,Alu,-2,308,39,81312454,81312764 +6 - chr16 81313053 81313357 chr16,81313053,81313357,+,AluSg,SINE,Alu,1,304,-6,81313053,81313363 -6 + chr16 81313413 81313423 chr16,81313413,81313585,-,L1MC5,LINE,L1,-30,9274,9105,81313383,81322689 +1 - chr16 81385463 81385505 chr16,81385375,81385596,+,MIRb,SINE,MIR,19,245,-23,81385357,81385619 +1 + chr16 81386850 81386962 chr16,81386665,81386962,+,AluSp,SINE,Alu,2,300,-13,81386664,81386975 +2 + chr16 81386962 81387129 chr16,81386962,81387129,+,L3b,LINE,CR1,3013,3203,-896,81383950,81388025 +6 + chr16 81387190 81387229 chr16,81387190,81387229,+,L3b,LINE,CR1,3334,3372,-727,81383857,81387956 +6 + chr16 81387533 81387560 chr16,81387533,81387842,+,AluSx1,SINE,Alu,1,307,-5,81387533,81387847 +5 + chr16 81464349 81464401 chr16,81464349,81464401,-,MIR3,SINE,MIR,-61,147,91,81464288,81464491 +6 - chr16 81464495 81464529 chr16,81464495,81464529,+,(TCAT)n,Simple_repeat,Simple_repeat,1,34,0,81464495,81464529 -6 + chr16 81464565 81464859 chr16,81464565,81465079,-,L1MB4,LINE,L1,0,6180,5631,81464565,81470709 +1 - chr16 81518728 81518835 chr16,81518728,81518835,+,AluJb,SINE,Alu,14,118,-194,81518715,81519029 +6 + chr16 81518835 81519132 chr16,81518835,81519132,-,AluSg7,SINE,Alu,-11,298,1,81518824,81519132 -6 - chr16 81519132 81519326 chr16,81519132,81519326,+,AluJb,SINE,Alu,119,310,-2,81519014,81519328 +6 + chr16 81519529 81519717 chr16,81519529,81519717,+,MIRb,SINE,MIR,11,220,-48,81519519,81519765 +6 + chr16 81520156 81520364 chr16,81520156,81520364,+,MIR,SINE,MIR,2,238,-24,81520155,81520388 +6 + chr16 81520421 81520549 chr16,81520421,81520549,+,FLAM_C,SINE,Alu,4,131,-12,81520418,81520561 +6 + chr16 81520551 81520617 chr16,81520551,81520628,+,GA-rich,Low_complexity,Low_complexity,1,78,0,81520551,81520628 +5 + chr16 81618576 81618773 chr16,81618576,81618773,+,MER63A,DNA,hAT-Blackjack,11,204,-6,81618566,81618779 +6 + chr16 81618805 81618927 chr16,81618805,81618927,-,MIR,SINE,MIR,-13,255,147,81618792,81619073 -6 - chr16 81619059 81619115 chr16,81619059,81619115,-,MIR,SINE,MIR,-154,108,51,81618905,81619165 -6 - chr16 81619680 81619881 chr16,81619680,81619881,+,MIR,SINE,MIR,14,227,-35,81619667,81619916 +6 + chr16 81620029 81620217 chr16,81620029,81620217,-,MIRb,SINE,MIR,0,268,66,81620029,81620282 -6 - chr16 81620304 81620499 chr16,81620304,81620499,+,MIR,SINE,MIR,15,233,-29,81620290,81620528 +6 + chr16 81630193 81630241 chr16,81630034,81630241,+,MIR,SINE,MIR,31,262,0,81630004,81630241 +1 + chr16 81630319 81630423 chr16,81630319,81630423,-,MER117,DNA,hAT-Charlie,-7,190,67,81630312,81630489 -6 - chr16 81631247 81631321 chr16,81631247,81631321,-,MIR,SINE,MIR,-135,127,47,81631112,81631367 -6 - chr16 81631502 81631916 chr16,81631502,81631916,-,L1ME3B,LINE,L1,-174,5999,5525,81631328,81637440 -6 - chr16 81738402 81738497 chr16,81738402,81738497,+,MIR1_Amn,SINE,MIR,87,189,-41,81738316,81738538 +6 + chr16 81739638 81739734 chr16,81739638,81739855,+,MIR,SINE,MIR,1,226,-36,81739638,81739891 +4 + chr16 81740314 81740379 chr16,81740314,81740420,+,MLT1K,LTR,ERVL-MaLR,153,266,-329,81740162,81740749 +4 + chr16 81740466 81740587 chr16,81740459,81740754,+,AluSx,SINE,Alu,1,312,0,81740459,81740754 +5 + chr16 81766724 81766777 chr16,81766514,81766777,+,L2a,LINE,L2,3131,3420,-6,81763384,81766783 +5 + chr16 81766814 81766962 chr16,81766814,81766986,+,L2c,LINE,L2,2724,2892,-527,81764091,81767513 +5 + chr16 81767475 81767512 chr16,81767444,81767512,+,L2c,LINE,L2,3103,3155,-232,81764342,81767744 +2 + chr16 81767592 81767868 chr16,81767592,81767905,-,L1ME1,LINE,L1,-22,6157,5891,81767570,81773795 -5 - chr16 82044336 82044402 chr16,82044292,82044402,-,LTR79,LTR,ERVL,-38,489,361,82044254,82044762 +5 - chr16 82063093 82063182 chr16,82063064,82063182,-,MIRc,SINE,MIR,-97,171,36,82062967,82063217 +4 - chr16 82139589 82139631 chr16,82139255,82145258,+,L1PA2,LINE,L1,136,6155,0,82139120,82145258 -1 + chr16 82175432 82175444 chr16,82175374,82175444,-,L2b,LINE,L2,0,3375,3305,82175374,82178748 -2 - chr16 82175554 82175632 chr16,82175554,82175632,-,L2b,LINE,L2,-231,3144,3067,82175323,82178698 -6 - chr16 82510389 82510529 chr16,82510324,82510529,-,MLT1D,LTR,ERVL-MaLR,0,505,276,82510324,82510804 +4 - chr16 82510533 82510544 chr16,82510533,82511085,-,MLT2A2,LTR,ERVL,-7,547,1,82510526,82511085 +1 - chr16 82510719 82510919 chr16,82510533,82511085,-,MLT2A2,LTR,ERVL,-7,547,1,82510526,82511085 +1 - chr16 82554049 82554084 chr16,82553988,82554084,-,THE1D-int,LTR,ERVL-MaLR,-336,1295,1200,82553652,82555283 +5 - chr16 82554103 82554185 chr16,82554103,82554185,-,MER20,DNA,hAT-Charlie,-141,78,1,82553962,82554185 +6 - chr16 82554185 82554248 chr16,82554185,82554254,-,LTR33,LTR,ERVL,-419,96,26,82553766,82554279 +2 - chr16 82574892 82574981 chr16,82574892,82574981,-,MLT1I,LTR,ERVL-MaLR,0,411,323,82574892,82575303 +6 - chr16 82575149 82575165 chr16,82575058,82575165,-,MLT1I,LTR,ERVL-MaLR,-229,182,78,82574829,82575242 +4 - chr16 82823212 82823360 chr16,82822813,82823360,-,MLT1G1,LTR,ERVL-MaLR,-39,516,1,82822774,82823360 -2 - chr16 82823440 82825168 chr16,82823440,82825168,+,L1MC5,LINE,L1,7492,9303,-1,82815949,82825169 +6 + chr16 82825539 82825846 chr16,82825539,82825846,-,AluSx,SINE,Alu,-10,302,1,82825529,82825846 -6 - chr16 82825853 82826154 chr16,82825853,82826154,-,AluSc,SINE,Alu,-11,298,1,82825842,82826154 -6 - chr16 82826426 82826703 chr16,82826426,82826740,-,Eulor4,Unknown,Unknown,-8,416,113,82826418,82826852 -4 - chr16 82953366 82953727 chr16,82953366,82953727,+,Charlie19a,DNA,hAT-Charlie,1,370,-16,82953366,82953743 -6 + chr16 82953863 82953973 chr16,82953863,82953973,-,MIR,SINE,MIR,-1,261,143,82953862,82954115 +6 - chr16 82953974 82954374 chr16,82953974,82954374,-,LTR16C,LTR,ERVL,0,489,87,82953974,82954460 +6 - chr16 82954644 82954747 chr16,82954603,82955203,-,L1MB7,LINE,L1,0,6184,5566,82954603,82960768 +3 - chr16 83383007 83383018 chr16,83382800,83383018,+,MER20,DNA,hAT-Charlie,1,219,0,83382800,83383018 -5 + chr16 83383018 83383200 chr16,83383018,83384239,-,L1MC4,LINE,L1,-386,7656,6469,83382632,83390707 +2 - chr16 83398060 83398154 chr16,83398060,83398154,-,MER5A,DNA,hAT-Charlie,0,189,95,83398060,83398248 +6 - chr16 83398158 83398170 chr16,83398158,83398626,-,MLT1C,LTR,ERVL-MaLR,0,467,1,83398158,83398626 +1 - chr16 83710307 83710546 chr16,83710307,83710551,+,L3,LINE,CR1,3392,3671,-428,83706916,83710979 -2 + chr16 83716987 83717092 chr16,83716964,83717279,+,AluSz,SINE,Alu,1,302,-10,83716964,83717289 -3 + chr16 83726190 83726325 chr16,83726190,83726325,-,MIR3,SINE,MIR,-11,197,61,83726179,83726385 +6 - chr16 83728868 83728999 chr16,83728796,83729199,-,MLT1A,LTR,ERVL-MaLR,0,374,4,83728796,83729202 +3 - chr16 83735278 83735414 chr16,83735087,83735414,-,Tigger18a,DNA,TcMar-Tigger,-186,666,321,83734901,83735734 +5 - chr16 83735435 83735508 chr16,83735435,83735508,-,L1MA9,LINE,L1,-1,6290,6218,83735434,83741725 +6 - chr16 83735514 83735666 chr16,83735514,83735666,-,L1MA9,LINE,L1,-290,6022,5850,83735224,83741515 +6 - chr16 83739918 83739979 chr16,83739801,83739979,-,L2a,LINE,L2,0,3426,3208,83739801,83743186 +4 - chr16 83772863 83772936 chr16,83772863,83773289,-,MER67D,LTR,ERV1,0,514,73,83772863,83773361 +1 - chr16 83790118 83790156 chr16,83790118,83790156,-,MIRc,SINE,MIR,-120,148,111,83789998,83790266 +6 - chr16 83803435 83803528 chr16,83803273,83803565,+,AluJb,SINE,Alu,1,312,0,83803273,83803565 -5 + chr16 83803669 83803892 chr16,83803565,83803892,-,MER113,DNA,hAT-Charlie,-143,378,45,83803422,83803936 +4 - chr16 83805852 83806026 chr16,83805852,83806026,+,AluSx,SINE,Alu,133,306,-6,83805720,83806032 -6 + chr16 83806046 83806127 chr16,83806046,83806177,+,MER20,DNA,hAT-Charlie,96,219,0,83805951,83806177 -1 + chr16 83931031 83931048 chr16,83931000,83931048,-,L2b,LINE,L2,-6,3369,3322,83930994,83934369 +4 - chr16 84192558 84192843 chr16,84192527,84192843,-,AluSq,SINE,Alu,0,313,1,84192527,84192843 +5 - chr16 84192844 84193127 chr16,84192844,84193127,-,AluSz6,SINE,Alu,-12,300,1,84192832,84193127 +6 - chr16 84193127 84193769 chr16,84193127,84193769,-,L1MC4,LINE,L1,-209,7833,7117,84192918,84200885 +6 - chr16 84194105 84194230 chr16,84194105,84194230,+,MIRb,SINE,MIR,30,189,-79,84194076,84194309 -5 + chr16 84255270 84255281 chr16,84254913,84255469,-,MLT1G,LTR,ERVL-MaLR,0,591,16,84254913,84255484 +5 - chr16 84258066 84258115 chr16,84257813,84258116,-,AluSz6,SINE,Alu,-9,303,1,84257804,84258116 +3 - chr16 84295573 84295679 chr16,84295573,84295679,-,L2c,LINE,L2,-34,3353,3245,84295539,84298923 +6 - chr16 84295679 84295824 chr16,84295679,84295848,+,MIR,SINE,MIR,1,156,-52,84295679,84295900 -2 + chr16 84296897 84296931 chr16,84296677,84296931,-,L2c,LINE,L2,-160,3215,2955,84296517,84299885 +4 - chr16 84342464 84342557 chr16,84342392,84342557,-,L2c,LINE,L2,-291,3096,2919,84342101,84345475 +5 - chr16 84343071 84343236 chr16,84343055,84343236,-,MIRb,SINE,MIR,-48,220,40,84343007,84343275 +4 - chr16 84343329 84343407 chr16,84343329,84343478,+,MLT1O,LTR,ERVL-MaLR,43,190,-352,84343287,84343830 -1 + chr16 84459603 84459898 chr16,84459603,84459898,+,L2a,LINE,L2,3047,3401,-25,84456557,84459923 -6 + chr16 84460822 84460893 chr16,84460822,84461055,-,L2b,LINE,L2,-35,3340,3115,84460787,84464169 +2 - chr16 84497077 84497129 chr16,84497037,84497129,-,AluJb,SINE,Alu,0,312,223,84497037,84497351 -2 - chr16 84497209 84497424 chr16,84497209,84497424,+,Tigger19b,DNA,TcMar-Tigger,191,430,-120,84497019,84497544 +6 + chr16 84595078 84595131 chr16,84595078,84595131,+,L2b,LINE,L2,3303,3356,-19,84591776,84595150 +6 + chr16 84595703 84595732 chr16,84595703,84595732,+,(TGTA)n,Simple_repeat,Simple_repeat,1,190,-101,84595703,84595833 +6 + chr16 84595732 84595975 chr16,84595732,84595975,+,(TA)n,Simple_repeat,Simple_repeat,1,247,0,84595732,84595975 +6 + chr16 84595975 84595988 chr16,84595975,84595988,+,(TGTA)n,Simple_repeat,Simple_repeat,191,291,0,84595785,84595988 +6 + chr16 84596319 84596436 chr16,84596319,84596436,+,MIRb,SINE,MIR,78,197,-71,84596242,84596507 +6 + chr16 84596478 84596793 chr16,84596478,84596793,+,L2,LINE,L2,1956,2299,-1120,84594523,84597913 +6 + chr16 84829011 84829094 chr16,84828923,84829094,+,AluSx4,SINE,Alu,130,301,-9,84828794,84829103 +2 + chr16 84917377 84917550 chr16,84917356,84917550,-,AluSq2,SINE,Alu,-10,303,107,84917346,84917656 +5 - chr16 84917701 84918058 chr16,84917701,84918058,-,MamRep1527,LTR,LTR,-48,921,558,84917653,84918615 +6 - chr16 84918709 84919126 chr16,84918709,84919126,-,L2,LINE,L2,-529,2890,2439,84918180,84921564 +6 - chr16 84919177 84919317 chr16,84919177,84919317,+,L1ME4a,LINE,L1,5960,6121,-3,84913218,84919320 -6 + chr16 84928519 84928605 chr16,84928519,84928626,-,MIRc,SINE,MIR,-39,229,115,84928480,84928740 -4 - chr16 84939381 84939603 chr16,84939362,84939655,-,AluSx1,SINE,Alu,-19,293,1,84939343,84939655 -5 - chr16 85143458 85143519 chr16,85143458,85143519,+,MIRb,SINE,MIR,43,104,-164,85143416,85143683 -6 + chr16 85144438 85144505 chr16,85144438,85144505,+,(GGCCCAG)n,Simple_repeat,Simple_repeat,1,65,0,85144438,85144505 -6 + chr16 85144641 85145098 chr16,85144641,85145098,-,MLT1D,LTR,ERVL-MaLR,0,505,23,85144641,85145120 +6 - chr16 85145304 85145520 chr16,85145304,85145520,+,MIRb,SINE,MIR,50,259,-9,85145255,85145529 -6 + chr16 85145647 85145698 chr16,85145647,85145698,+,L2c,LINE,L2,3340,3386,-1,85142308,85145699 -6 + chr16 85147623 85147697 chr16,85147589,85147697,-,L2a,LINE,L2,-12,3414,3303,85147577,85150999 -2 - chr16 85147698 85147763 chr16,85147698,85147763,-,MIRb,SINE,MIR,-30,238,172,85147668,85147934 -6 - chr16 85147791 85147843 chr16,85147791,85147843,-,L1MB5,LINE,L1,0,6174,6139,85147791,85153981 -6 - chr16 85147843 85148145 chr16,85147843,85148145,-,AluSc,SINE,Alu,-4,305,1,85147839,85148145 -6 - chr16 85148145 85148546 chr16,85148145,85148546,-,L1MB5,LINE,L1,-36,6138,5713,85148109,85154258 -6 - chr16 85148558 85148865 chr16,85148558,85148865,+,AluSx,SINE,Alu,1,310,-2,85148558,85148867 +6 + chr16 85148904 85149440 chr16,85148904,85149440,+,L1ME1,LINE,L1,5607,6178,-1,85143298,85149441 +6 + chr16 85185119 85185201 chr16,85184574,85185201,-,L1M5,LINE,L1,-3116,3030,2339,85181458,85187539 -2 - chr16 85185216 85185335 chr16,85185216,85185335,-,MIRb,SINE,MIR,-130,138,14,85185086,85185348 -6 - chr16 85282958 85283134 chr16,85282801,85283134,-,MLT1F,LTR,ERVL-MaLR,0,548,211,85282801,85283344 -1 - chr16 85284998 85285246 chr16,85284923,85285246,+,L1MC4,LINE,L1,7128,7474,-568,85277796,85285814 +2 + chr16 85285325 85285400 chr16,85285325,85285400,+,MER5A1,DNA,hAT-Charlie,1,65,-101,85285325,85285501 +6 + chr16 85285400 85285712 chr16,85285400,85285712,+,AluSq2,SINE,Alu,2,313,0,85285399,85285712 +6 + chr16 85285712 85285815 chr16,85285712,85285815,+,MER5A1,DNA,hAT-Charlie,66,160,-6,85285647,85285821 +6 + chr16 85359413 85359449 chr16,85359413,85359611,+,MIR,SINE,MIR,35,237,-25,85359379,85359636 +5 + chr16 85489813 85490116 chr16,85489697,85490116,+,MLT1C,LTR,ERVL-MaLR,6,467,0,85489692,85490116 +1 + chr16 85490349 85490412 chr16,85490349,85490412,+,MIR3,SINE,MIR,107,166,-42,85490243,85490454 +6 + chr16 85580009 85580179 chr16,85579847,85580179,-,L2a,LINE,L2,-3,3423,3016,85579844,85583194 +5 - chr16 85583516 85583571 chr16,85583516,85583606,+,(AC)n,Simple_repeat,Simple_repeat,1,90,0,85583516,85583606 -1 + chr16 85592266 85592449 chr16,85592150,85592449,-,AluSz,SINE,Alu,0,312,1,85592150,85592449 -1 - chr16 85592703 85592876 chr16,85592703,85592876,+,MIR,SINE,MIR,33,221,-41,85592671,85592917 +6 + chr16 85593029 85593182 chr16,85593029,85593182,-,MIR3,SINE,MIR,-42,188,43,85592987,85593224 -6 - chr16 85593488 85593603 chr16,85593488,85593603,+,(TTCCCC)n,Simple_repeat,Simple_repeat,1,121,0,85593488,85593603 +6 + chr16 85594225 85594253 chr16,85594225,85594253,+,G-rich,Low_complexity,Low_complexity,1,28,0,85594225,85594253 +6 + chr16 85594516 85594559 chr16,85594516,85594559,+,(TCAC)n,Simple_repeat,Simple_repeat,1,43,0,85594516,85594559 +6 + chr16 85594588 85594798 chr16,85594588,85594798,+,MIR,SINE,MIR,40,251,-11,85594549,85594809 +6 + chr16 85697716 85697798 chr16,85697716,85697798,-,MIRc,SINE,MIR,-112,156,74,85697604,85697871 +6 - chr16 85697823 85697868 chr16,85697823,85697989,-,LTR16C,LTR,ERVL,-28,461,272,85697795,85698260 +1 - chr16 85743305 85743549 chr16,85743305,85743549,-,MIRb,SINE,MIR,-1,267,8,85743304,85743556 -6 - chr16 85743621 85743636 chr16,85743621,85743636,+,A-rich,Low_complexity,Low_complexity,1,14,0,85743621,85743636 +6 + chr16 85743636 85743681 chr16,85743636,85743771,+,AluSp,SINE,Alu,1,134,-179,85743636,85743950 +4 + chr16 85744123 85744225 chr16,85744075,85744280,+,AluSp,SINE,Alu,135,313,0,85743941,85744280 +5 + chr16 85784960 85785048 chr16,85784960,85785246,-,AluJo,SINE,Alu,-25,287,1,85784935,85785246 -4 - chr16 85859681 85859771 chr16,85859681,85859771,-,L2,LINE,L2,-1884,1535,1434,85857797,85861204 -6 - chr16 85861126 85861329 chr16,85861126,85861329,+,MER20,DNA,hAT-Charlie,1,212,-7,85861126,85861336 +6 + chr16 85861731 85862012 chr16,85861731,85862043,+,AluY,SINE,Alu,1,310,-1,85861731,85862044 +5 + chr16 85935281 85935660 chr16,85935247,85935660,-,MER4A1,LTR,ERV1,0,594,55,85935247,85935714 +5 - chr16 85935688 85935915 chr16,85935688,85935995,+,MLT1D,LTR,ERVL-MaLR,153,505,0,85935536,85935995 -2 + chr16 85981750 85981870 chr16,85981548,85981870,+,AluJo,SINE,Alu,1,306,-6,85981548,85981876 +1 + chr16 85984372 85984404 chr16,85984329,85984404,-,MIR3,SINE,MIR,-29,179,97,85984300,85984500 -2 - chr16 85984668 85984723 chr16,85984668,85984795,+,MIR,SINE,MIR,9,139,-123,85984660,85984918 +5 + chr16 86035627 86035722 chr16,86035417,86035722,+,AluSg,SINE,Alu,1,304,-6,86035417,86035728 +1 + chr16 86035722 86035980 chr16,86035722,86035980,+,MLT1C,LTR,ERVL-MaLR,194,465,-2,86035529,86035982 +6 + chr16 86081414 86081522 chr16,86081414,86081522,-,MIR,SINE,MIR,-60,208,80,86081354,86081601 +6 - chr16 86081696 86081829 chr16,86081696,86081829,-,L1M5,LINE,L1,-351,5822,5703,86081345,86087531 +6 - chr16 86081829 86082150 chr16,86081829,86082150,-,AluY,SINE,Alu,0,311,1,86081829,86082150 +6 - chr16 86082150 86082280 chr16,86082150,86082280,-,L1M5,LINE,L1,-471,5702,5578,86081679,86087857 +6 - chr16 86083265 86083695 chr16,86083265,86083695,+,LTR16C,LTR,ERVL,20,473,-16,86083246,86083711 -6 + chr16 86083725 86083874 chr16,86083725,86083874,+,MIRb,SINE,MIR,34,187,-81,86083692,86083955 -6 + chr16 86084338 86084486 chr16,86084338,86084486,-,MIRb,SINE,MIR,-81,187,31,86084257,86084516 +6 - chr16 86084503 86084797 chr16,86084503,86084797,-,AluJb,SINE,Alu,-19,293,1,86084484,86084797 +6 - chr16 86084982 86085169 chr16,86084982,86085169,+,MIR,SINE,MIR,34,226,-36,86084949,86085205 -6 + chr16 86085729 86085818 chr16,86085729,86085818,+,MIRb,SINE,MIR,86,175,-93,86085644,86085911 -6 + chr16 86085819 86085964 chr16,86085819,86085964,+,MLT1J,LTR,ERVL-MaLR,2,149,-363,86085818,86086327 -6 + chr16 86086220 86086332 chr16,86086220,86086332,-,MIR,SINE,MIR,-40,222,115,86086180,86086446 +6 - chr16 86158377 86158497 chr16,86158377,86158542,-,L2c,LINE,L2,0,3387,3230,86158377,86161771 +2 - chr16 86158612 86158798 chr16,86158552,86158803,+,MLT1C,LTR,ERVL-MaLR,6,274,-193,86158547,86158996 -1 + chr16 86193085 86193216 chr16,86193085,86193216,-,MIRb,SINE,MIR,-121,147,1,86192964,86193216 +6 - chr16 86193791 86193969 chr16,86193791,86193969,-,MIR,SINE,MIR,-21,241,38,86193770,86194006 +6 - chr16 86194020 86194251 chr16,86194020,86194251,+,MIR,SINE,MIR,42,259,-3,86193979,86194254 -6 + chr16 86194935 86194968 chr16,86194935,86194968,+,G-rich,Low_complexity,Low_complexity,1,33,0,86194935,86194968 -6 + chr16 86221423 86221567 chr16,86221268,86221567,+,L1ME4b,LINE,L1,268,565,-327,86221001,86221894 -5 + chr16 86221677 86221773 chr16,86221677,86221860,+,MIR,SINE,MIR,79,262,0,86221599,86221860 -2 + chr16 86222680 86222729 chr16,86222680,86222924,+,MIR,SINE,MIR,9,266,-2,86222672,86222926 -1 + chr16 86225580 86225605 chr16,86225523,86225605,+,L2a,LINE,L2,3337,3410,-16,86222187,86225621 -5 + chr16 86225847 86225915 chr16,86225828,86225915,-,L2a,LINE,L2,0,3426,3350,86225828,86229264 +4 - chr16 86225878 86225962 chr16,86225878,86225990,+,L2b,LINE,L2,3276,3375,0,86222603,86225990 -2 + chr16 86269004 86269083 chr16,86268922,86269354,-,MSTB2,LTR,ERVL-MaLR,0,457,1,86268922,86269354 +3 - chr16 86291528 86291560 chr16,86291483,86291560,+,MIRb,SINE,MIR,102,179,-89,86291382,86291649 +2 + chr16 86292192 86292212 chr16,86292192,86292212,+,(AC)n,Simple_repeat,Simple_repeat,1,20,0,86292192,86292212 +6 + chr16 86293030 86293063 chr16,86293030,86293063,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,86293030,86293063 +6 + chr16 86293150 86293356 chr16,86293150,86293356,+,L1MB5,LINE,L1,5973,6174,0,86287178,86293356 +6 + chr16 86331844 86332065 chr16,86331803,86332065,-,MLT1D,LTR,ERVL-MaLR,-1,504,246,86331802,86332310 +5 - chr16 86332094 86332222 chr16,86332094,86332222,-,MLT1D,LTR,ERVL-MaLR,-488,139,25,86331606,86332246 +6 - chr16 86332554 86332603 chr16,86332554,86332603,+,L2c,LINE,L2,3277,3330,-57,86329278,86332660 -6 + chr16 86332959 86333039 chr16,86332939,86333039,-,L2b,LINE,L2,-1,3386,3297,86332938,86336335 +4 - chr16 86333688 86333751 chr16,86333403,86333751,+,L1ME3A,LINE,L1,5589,5942,-231,86327815,86333982 -4 + chr16 86333796 86333907 chr16,86333796,86334041,+,MLT2E,LTR,ERVL,59,322,-306,86333738,86334347 -2 + chr16 86335678 86335872 chr16,86335658,86335890,+,L2a,LINE,L2,3151,3415,-11,86332508,86335901 -3 + chr16 86337820 86337914 chr16,86337820,86337914,+,MIR,SINE,MIR,163,261,-1,86337658,86337915 -6 + chr16 86345492 86345679 chr16,86345432,86345869,+,L2a,LINE,L2,2943,3405,-21,86342490,86345890 -1 + chr16 86347387 86347449 chr16,86347176,86347523,+,THE1B,LTR,ERVL-MaLR,1,356,-8,86347176,86347531 +1 + chr16 86349381 86349408 chr16,86349367,86349408,-,L1MB2,LINE,L1,-119,6052,6012,86349248,86355419 -2 - chr16 86349485 86349611 chr16,86349485,86349671,+,L2b,LINE,L2,2998,3183,-192,86346488,86349863 +1 + chr16 86349551 86349671 chr16,86349485,86349671,+,L2b,LINE,L2,2998,3183,-192,86346488,86349863 -1 + chr16 86474529 86474899 chr16,86474263,86474899,+,L1MC2,LINE,L1,5423,6079,-265,86468841,86475164 -5 + chr16 86474899 86475020 chr16,86474899,86475020,-,AluSx3,SINE,Alu,-14,297,177,86474885,86475196 +6 - chr16 86475113 86475290 chr16,86475113,86475290,-,MIRb,SINE,MIR,-3,265,98,86475110,86475387 +6 - chr16 86487780 86488037 chr16,86487780,86488037,-,MLT1C,LTR,ERVL-MaLR,0,467,201,86487780,86488237 +6 - chr16 86488374 86488485 chr16,86488374,86488485,-,MIR,SINE,MIR,-146,116,2,86488228,86488486 +6 - chr16 86489394 86489812 chr16,86489394,86489812,+,MLT1H2,LTR,ERVL-MaLR,124,579,0,86489271,86489812 -6 + chr16 86489865 86490262 chr16,86489865,86490262,+,L1ME3A,LINE,L1,5728,6166,-7,86484138,86490269 -5 + chr16 86490288 86490466 chr16,86490288,86490466,-,MLT1F1,LTR,ERVL-MaLR,-5,564,385,86490283,86490850 +6 - chr16 86490474 86490578 chr16,86490474,86490578,+,MIR3,SINE,MIR,93,200,-8,86490382,86490586 -6 + chr16 86490702 86490896 chr16,86490702,86490896,-,L1MC5a,LINE,L1,-5,2772,2578,86490697,86493473 +1 - chr16 86520651 86520886 chr16,86520651,86520886,+,MIR,SINE,MIR,12,243,-19,86520640,86520905 -6 + chr16 86520846 86520970 chr16,86520846,86520970,-,MIRb,SINE,MIR,-123,145,1,86520723,86520970 +6 - chr16 86521080 86521235 chr16,86521080,86521235,+,MIRb,SINE,MIR,67,218,-50,86521014,86521285 -6 + chr16 86521969 86522146 chr16,86521969,86522146,+,MIR,SINE,MIR,3,200,-62,86521967,86522208 -6 + chr16 86523194 86523307 chr16,86523194,86523307,+,MIRb,SINE,MIR,18,125,-143,86523177,86523450 -6 + chr16 86523394 86523562 chr16,86523394,86523562,+,MIR3,SINE,MIR,6,184,-84,86523389,86523646 -6 + chr16 86555364 86555456 chr16,86555364,86555456,-,L2a,LINE,L2,-2,3424,3277,86555362,86558732 -6 - chr16 86555488 86555586 chr16,86555488,86555586,+,L2b,LINE,L2,3103,3208,-179,86552386,86555765 +6 + chr16 86556098 86556206 chr16,86556098,86556206,-,MIRc,SINE,MIR,-64,204,96,86556034,86556301 -6 - chr16 86556250 86556444 chr16,86556250,86556444,-,MIR,SINE,MIR,-1,261,64,86556249,86556507 -6 - chr16 86556929 86557077 chr16,86556929,86557077,+,AluJo,SINE,Alu,165,312,0,86556765,86557077 +6 + chr16 86557124 86557291 chr16,86557124,86557291,+,L1PA10,LINE,L1,6007,6168,0,86551118,86557291 +6 + chr16 86595380 86595471 chr16,86595380,86595471,-,MIRb,SINE,MIR,-90,178,88,86595290,86595558 -6 - chr16 86595862 86596052 chr16,86595862,86596052,-,MIRb,SINE,MIR,-14,254,63,86595848,86596114 -6 - chr16 86596232 86596454 chr16,86596232,86596454,+,MIRb,SINE,MIR,16,244,-24,86596217,86596478 +6 + chr16 86596464 86596654 chr16,86596464,86596654,-,MIR,SINE,MIR,-48,214,22,86596416,86596675 -6 - chr16 86596898 86597072 chr16,86596898,86597072,+,MIR3,SINE,MIR,30,204,-4,86596869,86597076 +6 + chr16 86597556 86597639 chr16,86597556,86597945,+,MER121,DNA,hAT?,8,391,-10,86597549,86597955 +5 + chr16 86637013 86637043 chr16,86636960,86637043,+,MamGypLTR3,LTR,Gypsy,313,393,-501,86636648,86637544 -4 + chr16 86647093 86647173 chr16,86646740,86647173,+,L2a,LINE,L2,2957,3425,-1,86643784,86647174 +2 + chr16 86647206 86647356 chr16,86647206,86647439,-,L2c,LINE,L2,0,3387,3149,86647206,86650587 -4 - chr16 86668788 86668923 chr16,86668788,86668939,+,MIRb,SINE,MIR,23,175,-93,86668766,86669032 +5 + chr16 86698443 86698540 chr16,86698443,86698540,+,Charlie7a,DNA,hAT-Charlie,3,102,-170,86698441,86698710 +6 + chr16 86698607 86698841 chr16,86698607,86698903,+,Charlie7,DNA,hAT-Charlie,2169,2496,-116,86696439,86699019 +5 + chr16 86720688 86721003 chr16,86720418,86721095,-,L1MC4,LINE,L1,0,8042,7276,86720418,86728370 +5 - chr16 86722091 86722147 chr16,86722054,86722212,+,MLT1A0,LTR,ERVL-MaLR,1,150,-215,86722054,86722427 +1 + chr16 86737818 86737929 chr16,86737818,86737929,+,L2a,LINE,L2,3274,3378,-48,86734545,86737977 +6 + chr16 86738251 86738493 chr16,86738251,86738493,+,MER83,LTR,ERV1,4,246,-202,86738248,86738695 +6 + chr16 86738577 86738634 chr16,86738577,86738634,+,MER83,LTR,ERV1,190,246,-202,86738388,86738836 +6 + chr16 86738671 86738873 chr16,86738671,86738873,+,MER83,LTR,ERV1,190,358,-90,86738482,86738963 +6 + chr16 86738873 86739060 chr16,86738873,86739060,-,AluSc,SINE,Alu,-122,187,1,86738751,86739060 -6 - chr16 86739060 86739137 chr16,86739060,86739137,+,MER83,LTR,ERV1,359,448,0,86738702,86739137 +6 + chr16 86739331 86739364 chr16,86739331,86739364,+,(TTCC)n,Simple_repeat,Simple_repeat,1,33,0,86739331,86739364 +6 + chr16 86739364 86739448 chr16,86739364,86739448,+,(CTTT)n,Simple_repeat,Simple_repeat,1,86,0,86739364,86739448 +6 + chr16 86739453 86739754 chr16,86739453,86739754,-,AluSx1,SINE,Alu,-7,305,2,86739446,86739755 -6 - chr16 86739794 86740153 chr16,86739794,86740153,-,MLT1B,LTR,ERVL-MaLR,-26,364,1,86739768,86740153 -6 - chr16 86740631 86740829 chr16,86740631,86740829,+,L1PB1,LINE,L1,5947,6147,-4,86734685,86740833 +6 + chr16 87057784 87057818 chr16,87057745,87057818,-,LTR83,LTR,ERVL,-411,369,297,87057334,87058114 -1 - chr16 87058050 87058090 chr16,87058050,87058090,+,MIR1_Amn,SINE,MIR,115,155,-75,87057936,87058165 +6 + chr16 87058180 87058507 chr16,87058180,87058507,+,L2b,LINE,L2,3012,3372,-3,87055169,87058510 +6 + chr16 87059075 87059192 chr16,87059075,87059192,-,MIR,SINE,MIR,-79,183,65,87058996,87059256 -6 - chr16 87059260 87059497 chr16,87059260,87059497,-,MIRb,SINE,MIR,-4,264,3,87059256,87059499 -6 - chr16 87059559 87059753 chr16,87059559,87059753,+,MIR,SINE,MIR,17,202,-60,87059543,87059813 +6 + chr16 87059996 87060077 chr16,87059996,87060077,+,(TGGCCA)n,Simple_repeat,Simple_repeat,1,83,0,87059996,87060077 +6 + chr16 87063047 87063080 chr16,87063047,87063080,+,(GTT)n,Simple_repeat,Simple_repeat,1,33,0,87063047,87063080 +6 + chr16 87063120 87063422 chr16,87063120,87063422,-,AluJo,SINE,Alu,-8,304,1,87063112,87063422 -6 - chr16 87063645 87063811 chr16,87063645,87063811,+,(AC)n,Simple_repeat,Simple_repeat,1,166,0,87063645,87063811 +6 + chr16 87069442 87069751 chr16,87069442,87069751,+,L1MC2,LINE,L1,6021,6344,0,87063422,87069751 +6 + chr16 87212886 87213010 chr16,87212759,87213010,-,MIRb,SINE,MIR,-8,260,3,87212751,87213012 -2 - chr16 87225632 87225856 chr16,87225632,87225856,-,MIRb,SINE,MIR,-5,257,6,87225627,87225861 -6 - chr16 87262759 87262858 chr16,87262735,87262858,-,MER63B,DNA,hAT-Blackjack,0,436,305,87262735,87263162 +5 - chr16 87267737 87267988 chr16,87267737,87267988,+,MIRc,SINE,MIR,10,268,0,87267728,87267988 -6 + chr16 87273148 87273223 chr16,87272971,87273223,-,L1MB5,LINE,L1,-36,6138,5892,87272935,87279114 +4 - chr16 87291802 87291907 chr16,87291802,87291907,+,FRAM,SINE,Alu,60,161,-15,87291743,87291922 -6 + chr16 87292123 87292438 chr16,87292123,87292641,-,MLT1F,LTR,ERVL-MaLR,0,548,2,87292123,87292642 +1 - chr16 87297044 87297105 chr16,87297044,87297105,-,L2a,LINE,L2,-10,3416,3353,87297034,87300457 -6 - chr16 87297319 87297494 chr16,87297319,87297494,+,MIR3,SINE,MIR,1,181,-27,87297319,87297521 +6 + chr16 87327379 87327426 chr16,87327379,87327672,+,AluJb,SINE,Alu,5,299,-13,87327375,87327685 +5 + chr16 87327560 87327584 chr16,87327379,87327672,+,AluJb,SINE,Alu,5,299,-13,87327375,87327685 +5 + chr16 87362553 87362579 chr16,87362553,87362579,+,(ATTG)n,Simple_repeat,Simple_repeat,1,26,0,87362553,87362579 +6 + chr16 87362580 87362605 chr16,87362580,87362856,-,AluSz,SINE,Alu,-32,280,1,87362548,87362856 -4 - chr16 87367097 87367196 chr16,87366898,87367196,+,AluJr,SINE,Alu,4,309,-3,87366895,87367199 +2 + chr16 87396818 87396941 chr16,87396818,87397125,-,AluSg4,SINE,Alu,-4,306,1,87396814,87397125 +2 - chr16 87400021 87400070 chr16,87399790,87400070,-,AluSc,SINE,Alu,-29,280,1,87399761,87400070 +4 - chr16 87400131 87400173 chr16,87400131,87400173,+,(GT)n,Simple_repeat,Simple_repeat,1,42,0,87400131,87400173 -6 + chr16 87400179 87400295 chr16,87400179,87400478,-,AluY,SINE,Alu,-14,297,1,87400165,87400478 +1 - chr16 87470468 87470751 chr16,87470468,87470751,+,L1ME4a,LINE,L1,5545,5827,-297,87464924,87471048 -6 + chr16 87470797 87470902 chr16,87470797,87470902,+,L1ME4a,LINE,L1,5949,6069,-55,87464849,87470957 -6 + chr16 87472169 87472388 chr16,87472169,87472388,+,MIRb,SINE,MIR,12,247,-21,87472158,87472409 -6 + chr16 87472736 87473016 chr16,87472736,87473016,-,AluJr,SINE,Alu,-12,300,3,87472724,87473018 +6 - chr16 87473204 87473502 chr16,87473204,87473502,-,AluSq2,SINE,Alu,-15,298,1,87473189,87473502 +6 - chr16 87493365 87493513 chr16,87493365,87493548,+,MIRb,SINE,MIR,2,188,-80,87493364,87493628 +4 + chr16 87494151 87494235 chr16,87494151,87494250,+,FLAM_A,SINE,Alu,17,115,-27,87494135,87494277 +1 + chr16 87495519 87495713 chr16,87495357,87495741,+,MLT1C,LTR,ERVL-MaLR,6,585,-42,87495352,87495783 +3 + chr16 87503812 87503911 chr16,87503743,87503911,-,MIRb,SINE,MIR,-59,209,19,87503684,87503929 -2 - chr16 87506182 87506200 chr16,87505858,87506200,-,MLT1J,LTR,ERVL-MaLR,-45,467,111,87505813,87506310 -2 - chr16 87515516 87515576 chr16,87515505,87515576,+,Charlie4z,DNA,hAT-Charlie,90,160,-7,87515416,87515583 +2 + chr16 87515611 87515635 chr16,87515611,87515673,+,MIRc,SINE,MIR,81,149,-119,87515531,87515792 +5 + chr16 87600613 87600829 chr16,87600613,87600829,-,MIRb,SINE,MIR,0,268,23,87600613,87600851 +6 - chr16 87600866 87601200 chr16,87600866,87601200,+,L1ME3Cz,LINE,L1,170,497,-500,87600697,87601700 -6 + chr16 87602042 87602068 chr16,87602042,87602068,+,G-rich,Low_complexity,Low_complexity,1,55,-23,87602042,87602091 -6 + chr16 87602068 87602107 chr16,87602068,87602107,+,(GGCGCGA)n,Simple_repeat,Simple_repeat,1,39,0,87602068,87602107 -6 + chr16 87683945 87683982 chr16,87683931,87683982,+,L2b,LINE,L2,3321,3375,0,87680611,87683982 -5 + chr16 87684087 87684137 chr16,87684087,87684137,+,(CCCCTGTC)n,Simple_repeat,Simple_repeat,1,53,0,87684087,87684137 -6 + chr16 87693537 87693680 chr16,87693391,87693680,+,AluSx,SINE,Alu,1,286,-26,87693391,87693706 -5 + chr16 87694652 87694853 chr16,87694652,87694853,-,L1MB8,LINE,L1,-8,6170,5955,87694644,87700807 +6 - chr16 87694936 87695088 chr16,87694936,87695088,-,L1MB8,LINE,L1,-671,5773,5620,87694265,87700707 +6 - chr16 87739771 87739823 chr16,87739685,87739823,+,L1MB1,LINE,L1,5824,5967,-201,87733862,87740024 -5 + chr16 87739822 87739868 chr16,87739822,87740005,+,L1MB7,LINE,L1,5991,6176,-8,87733832,87740013 -2 + chr16 87778808 87778854 chr16,87778560,87778854,-,AluJr,SINE,Alu,-16,296,5,87778544,87778858 +4 - chr16 87780134 87780235 chr16,87780118,87780235,-,AluSp,SINE,Alu,-197,116,1,87779921,87780235 +5 - chr16 87780640 87780731 chr16,87780640,87780731,-,L3,LINE,CR1,-2277,1822,1721,87778363,87782451 +6 - chr16 87837413 87837458 chr16,87837314,87837458,+,MLT1F2,LTR,ERVL-MaLR,458,649,-4,87836857,87837462 +2 + chr16 88079161 88079261 chr16,88078962,88079261,+,AluJo,SINE,Alu,1,297,-15,88078962,88079276 -5 + chr16 88088070 88088170 chr16,88088070,88088170,-,MIRc,SINE,MIR,-82,186,83,88087988,88088252 +6 - chr16 88089589 88089768 chr16,88089589,88089768,-,MIR,SINE,MIR,-19,243,77,88089570,88089844 +6 - chr16 88090794 88090829 chr16,88090794,88090829,+,G-rich,Low_complexity,Low_complexity,1,35,0,88090794,88090829 -6 + chr16 88177359 88177410 chr16,88177359,88177410,+,(CTCCCACT)n,Simple_repeat,Simple_repeat,1,56,0,88177359,88177410 +6 + chr16 88177359 88177410 chr16,88177359,88177410,+,(CTCCCACT)n,Simple_repeat,Simple_repeat,1,56,0,88177359,88177410 -6 + chr16 88177705 88178010 chr16,88177705,88178010,-,AluSx,SINE,Alu,-10,302,1,88177695,88178010 +6 - chr16 88191666 88191710 chr16,88191666,88191710,+,(CTTC)n,Simple_repeat,Simple_repeat,1,46,0,88191666,88191710 -6 + chr16 88192141 88192208 chr16,88191885,88192208,+,MLT1A,LTR,ERVL-MaLR,1,336,-38,88191885,88192246 -4 + chr16 88193577 88193667 chr16,88193416,88193726,+,AluJr,SINE,Alu,1,303,-9,88193416,88193735 -1 + chr16 88512960 88512987 chr16,88512883,88512987,+,MIR,SINE,MIR,31,149,-113,88512853,88513100 -5 + chr16 88513113 88513168 chr16,88513113,88513168,+,MIR1_Amn,SINE,MIR,3,59,-171,88513111,88513339 -6 + chr16 88663354 88663398 chr16,88663354,88663398,+,(GGCGTC)n,Simple_repeat,Simple_repeat,1,45,0,88663354,88663398 +1 + chr16 88671321 88671693 chr16,88671321,88671831,-,Charlie1a,DNA,hAT-Charlie,-344,1111,561,88670977,88672391 -4 - chr16 88671813 88671831 chr16,88671321,88671831,-,Charlie1a,DNA,hAT-Charlie,-344,1111,561,88670977,88672391 -2 - chr16 88673396 88673525 chr16,88673213,88673525,-,AluSx,SINE,Alu,0,312,1,88673213,88673525 -1 - chr16 88673588 88673684 chr16,88673588,88673684,-,MIRc,SINE,MIR,-117,151,48,88673471,88673731 -5 - chr16 88675137 88675161 chr16,88675137,88675161,+,(CAAA)n,Simple_repeat,Simple_repeat,1,24,0,88675137,88675161 +6 + chr16 88685188 88685274 chr16,88685188,88685274,-,MER112,DNA,hAT-Charlie,-123,138,43,88685065,88685316 -6 - chr16 88685755 88685778 chr16,88685755,88685778,+,(AGGG)n,Simple_repeat,Simple_repeat,1,23,0,88685755,88685778 +6 + chr16 88685926 88685965 chr16,88685926,88685965,+,(CCCT)n,Simple_repeat,Simple_repeat,1,39,0,88685926,88685965 +6 + chr16 88708956 88708993 chr16,88708944,88708993,-,MER5A,DNA,hAT-Charlie,-21,168,126,88708923,88709118 +5 - chr16 88708993 88709288 chr16,88708993,88709288,+,AluJo,SINE,Alu,2,289,-23,88708992,88709311 -6 + chr16 88709288 88709343 chr16,88709288,88709343,-,MER5A,DNA,hAT-Charlie,-64,125,74,88709224,88709416 +6 - chr16 88718615 88718705 chr16,88718074,88718705,+,L1MB7,LINE,L1,5309,6030,-154,88712766,88718859 +1 + chr16 88718705 88718999 chr16,88718705,88718999,-,AluJr,SINE,Alu,-9,303,11,88718696,88719009 -6 - chr16 88719003 88719148 chr16,88719003,88719148,-,AluJr,SINE,Alu,-171,141,1,88718832,88719148 -6 - chr16 88719148 88719279 chr16,88719148,88719279,+,L1MB8,LINE,L1,6026,6178,0,88713123,88719279 +6 + chr16 88719533 88719575 chr16,88719533,88719575,+,(CCCTGG)n,Simple_repeat,Simple_repeat,1,42,0,88719533,88719575 +6 + chr16 88736941 88737020 chr16,88736941,88737020,+,MIR3,SINE,MIR,111,201,-7,88736831,88737027 +6 + chr16 88739380 88739449 chr16,88739380,88739449,+,MIRb,SINE,MIR,4,80,-188,88739377,88739637 +6 + chr16 88739511 88739650 chr16,88739511,88739650,+,MIR,SINE,MIR,16,159,-49,88739496,88739699 +6 + chr16 88745474 88745748 chr16,88745474,88745767,+,AluSx1,SINE,Alu,1,301,-11,88745474,88745778 +5 + chr16 88883339 88883513 chr16,88883339,88883513,+,MER57B2,LTR,ERV1,251,434,0,88883089,88883513 +6 + chr16 88884657 88884826 chr16,88884657,88884826,-,MIRb,SINE,MIR,-64,204,27,88884593,88884852 -6 - chr16 88886260 88886320 chr16,88886260,88886320,+,MIR3,SINE,MIR,94,150,-58,88886167,88886378 +6 + chr16 88886350 88886452 chr16,88886350,88886452,-,MIR3,SINE,MIR,-160,108,2,88886190,88886453 -6 - chr16 88937615 88937775 chr16,88937615,88937775,+,MIR,SINE,MIR,106,261,-7,88937510,88937782 -1 + chr16 88937738 88937784 chr16,88937738,88937784,+,L2a,LINE,L2,3379,3424,-2,88934360,88937786 -1 + chr16 89046173 89046386 chr16,89046173,89046386,-,MIR,SINE,MIR,-12,250,3,89046161,89046388 +6 - chr16 89046475 89046545 chr16,89046475,89046545,+,L3b,LINE,CR1,4982,5051,-181,89041494,89046726 -6 + chr16 89046695 89046720 chr16,89046695,89046720,+,(CAGG)n,Simple_repeat,Simple_repeat,1,25,0,89046695,89046720 -6 + chr16 89047049 89047167 chr16,89047049,89047167,+,MIR3,SINE,MIR,85,202,-6,89046965,89047173 -6 + chr16 89052745 89052771 chr16,89052745,89052771,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,89052745,89052771 -6 + chr16 89052773 89052803 chr16,89052773,89052803,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,89052773,89052803 -6 + chr16 89160667 89160747 chr16,89160667,89160747,+,MLT1D,LTR,ERVL-MaLR,274,361,-144,89160394,89160891 +6 + chr16 89162382 89162480 chr16,89162379,89162480,+,(CA)n,Simple_repeat,Simple_repeat,1,101,0,89162379,89162480 +1 + chr16 89163206 89163543 chr16,89163206,89163543,-,L1ME3Cz,LINE,L1,-575,422,50,89162631,89163592 -6 - chr16 89163682 89163967 chr16,89163682,89163967,-,AluSz6,SINE,Alu,-1,311,2,89163681,89163968 -6 - chr16 89215211 89215611 chr16,89214830,89215611,+,L1M4,LINE,L1,4909,5724,-459,89209922,89216070 -5 + chr16 89215662 89215968 chr16,89215662,89215968,+,AluSc,SINE,Alu,7,309,0,89215656,89215968 -6 + chr16 89216001 89216282 chr16,89216001,89216282,+,AluSx1,SINE,Alu,9,306,-6,89215993,89216288 -6 + chr16 89216287 89216536 chr16,89216287,89216536,+,LTR55,LTR,ERVL?,144,372,-176,89216144,89216712 -6 + chr16 89216716 89216966 chr16,89216716,89216966,-,L1MC4a,LINE,L1,-1117,5029,4749,89215599,89221714 +6 - chr16 89270427 89270467 chr16,89270427,89270467,+,(CTGCCC)n,Simple_repeat,Simple_repeat,1,43,0,89270427,89270467 +6 + chr16 89271238 89271431 chr16,89271238,89271431,-,AluSp,SINE,Alu,-12,301,104,89271226,89271534 -6 - chr16 89271564 89272419 chr16,89271564,89272419,+,L1MA1,LINE,L1,4814,5665,-637,89266751,89273056 +6 + chr16 89272419 89272686 chr16,89272419,89272686,+,AluSx,SINE,Alu,1,299,-13,89272419,89272699 +6 + chr16 89272686 89273044 chr16,89272686,89273212,+,L1MA1,LINE,L1,5666,6201,-101,89267021,89273313 +5 + chr16 89324283 89324317 chr16,89324283,89324317,+,(CGGAACA)n,Simple_repeat,Simple_repeat,1,36,0,89324283,89324317 +6 + chr16 89324383 89324430 chr16,89324383,89324430,+,L1ME1,LINE,L1,5388,5434,-1010,89318996,89325440 +6 + chr16 89324437 89324964 chr16,89324437,89324964,+,MLT2A2,LTR,ERVL,1,453,0,89324437,89324964 +5 + chr16 89325029 89325110 chr16,89325029,89325173,+,L1ME1,LINE,L1,5578,5721,-473,89319452,89325646 +5 + chr16 89420342 89420424 chr16,89420342,89420457,-,MER20,DNA,hAT-Charlie,-83,136,1,89420259,89420457 +2 - chr16 89422187 89422226 chr16,89422187,89422307,+,AluJr,SINE,Alu,157,277,-35,89422031,89422342 -1 + chr16 89492017 89492042 chr16,89491757,89492042,-,AluJr,SINE,Alu,-9,303,7,89491748,89492048 +5 - chr16 89492042 89492153 chr16,89492042,89492153,+,MIR,SINE,MIR,162,258,-4,89491881,89492157 -6 + chr16 89492538 89492633 chr16,89492538,89492636,-,AluJb,SINE,Alu,-70,242,135,89492468,89492770 +2 - chr16 89493498 89493514 chr16,89493421,89493514,-,L2,LINE,L2,-530,2889,2792,89492891,89496305 +4 - chr16 89493583 89493597 chr16,89493583,89493723,-,L2,LINE,L2,-860,2559,2419,89492723,89496141 +2 - chr16 89504418 89504437 chr16,89504418,89504437,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,89504418,89504437 -6 + chr16 89504446 89504460 chr16,89504446,89504605,+,AluSx,SINE,Alu,134,292,-20,89504313,89504625 -1 + chr16 89516797 89516890 chr16,89516578,89516890,+,AluY,SINE,Alu,1,307,-4,89516578,89516894 +1 + chr16 89516913 89517136 chr16,89516913,89517136,-,Tigger2a,DNA,TcMar-Tigger,-205,229,1,89516708,89517136 -6 - chr16 89517614 89517918 chr16,89517614,89517918,-,AluY,SINE,Alu,-8,303,1,89517606,89517918 -6 - chr16 89518625 89518974 chr16,89518625,89518974,+,L1MD1,LINE,L1,5842,6172,-70,89512784,89519044 +6 + chr16 89518974 89519283 chr16,89518974,89519283,-,AluSg,SINE,Alu,-3,307,1,89518971,89519283 -6 - chr16 89519283 89519331 chr16,89519283,89519331,+,L1MD1,LINE,L1,6173,6219,-23,89513111,89519354 +6 + chr16 89519379 89519680 chr16,89519379,89519680,-,AluSp,SINE,Alu,-12,301,2,89519367,89519681 -6 - chr16 89520380 89520696 chr16,89520380,89520696,-,AluSq,SINE,Alu,0,313,1,89520380,89520696 -6 - chr16 89520712 89520843 chr16,89520712,89520843,-,FLAM_C,SINE,Alu,-10,133,2,89520702,89520844 -6 - chr16 89520849 89520995 chr16,89520849,89520995,-,L1ME4c,LINE,L1,-408,422,276,89520441,89521270 -6 - chr16 89521472 89521800 chr16,89521472,89521800,+,AluJo,SINE,Alu,13,307,-5,89521460,89521805 +6 + chr16 89682620 89682842 chr16,89682446,89683153,-,LTR8A,LTR,ERV1,0,727,15,89682446,89683167 +5 - chr16 89684642 89684817 chr16,89684508,89684817,-,AluY,SINE,Alu,-3,308,1,89684505,89684817 -1 - chr16 89684909 89685304 chr16,89684909,89685375,+,MER9a3,LTR,ERVK,1,509,-3,89684909,89685378 +5 + chr16 89685301 89685375 chr16,89684909,89685375,+,MER9a3,LTR,ERVK,1,509,-3,89684909,89685378 -5 + chr16 89920277 89920354 chr16,89920277,89920354,+,MIR3,SINE,MIR,82,172,-36,89920196,89920390 -6 + chr16 89970402 89970650 chr16,89970402,89970650,-,Tigger1,DNA,TcMar-Tigger,-779,1639,1366,89969623,89972015 -6 - chr16 89970650 89970931 chr16,89970650,89970953,-,AluSp,SINE,Alu,-6,307,1,89970644,89970953 -4 - chr16 90028908 90029043 chr16,90028895,90029043,-,L2,LINE,L2,-508,2911,2767,90028387,90031809 +5 - chr16 90029286 90029490 chr16,90029286,90029490,-,Charlie8,DNA,hAT-Charlie,-64,277,38,90029222,90029527 +1 - chr16 90029776 90029901 chr16,90029776,90030055,-,AluYh3,SINE,Alu,-32,279,2,90029744,90030056 +1 - chr16 90102286 90102334 chr16,90102286,90102334,+,(GCA)n,Simple_repeat,Simple_repeat,1,48,0,90102286,90102334 +6 + chr16 90106159 90106270 chr16,90106035,90106270,-,AluSc8,SINE,Alu,-81,230,2,90105954,90106271 -2 - chr16 90106035 90106270 chr16,90106035,90106270,-,AluSc8,SINE,Alu,-81,230,2,90105954,90106271 +6 - chr16 90110574 90110748 chr16,90110561,90110748,+,LTR56,LTR,ERV1,1,177,-268,90110561,90111016 -5 + chr16 90111372 90111437 chr16,90111346,90111642,-,AluSx1,SINE,Alu,-8,304,1,90111338,90111642 -3 - chr16 90126049 90126088 chr16,90126049,90126134,+,MIRb,SINE,MIR,100,182,-86,90125950,90126220 -2 + chr16 90129797 90129824 chr16,90129788,90129824,-,L2c,LINE,L2,-84,3303,3268,90129704,90133091 -2 - chr16 90133219 90133434 chr16,90133140,90133568,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,90133138,90133568 -3 - chr16 90137781 90137993 chr16,90137781,90138120,-,AluSq2,SINE,Alu,-6,307,1,90137775,90138120 -5 - chr16 90157932 90158055 chr16,90157918,90158203,-,AluJb,SINE,Alu,-18,294,11,90157900,90158213 -1 - chr16 90158172 90158203 chr16,90157918,90158203,-,AluJb,SINE,Alu,-18,294,11,90157900,90158213 -1 - chr16 90158203 90158266 chr16,90158203,90158266,+,LTR41,LTR,ERVL,713,768,0,90157491,90158266 +6 + chr16 90158568 90158588 chr16,90158568,90159000,+,MER1A,DNA,hAT-Charlie,56,490,-39,90158513,90159039 +4 + chr16 90161684 90161949 chr16,90161659,90161949,-,AluJo,SINE,Alu,-13,299,44,90161646,90161992 -2 - chr16 90161951 90162031 chr16,90161951,90162031,-,FLAM_A,SINE,Alu,-25,117,38,90161926,90162068 -6 - chr16 90162316 90162369 chr16,90162316,90162736,+,MER1A,DNA,hAT-Charlie,1,439,-90,90162316,90162826 +4 + chr16 90162597 90162654 chr16,90162316,90162736,+,MER1A,DNA,hAT-Charlie,1,439,-90,90162316,90162826 +3 + chr16 90163764 90163923 chr16,90163728,90163923,-,AluJb,SINE,Alu,-2,310,117,90163726,90164039 -2 - chr16 90163923 90163958 chr16,90163923,90164025,+,MER8,DNA,TcMar-Tigger,137,237,-2,90163787,90164027 +4 + chr16 90173322 90173358 chr16,90173322,90173358,+,(CAGCACC)n,Simple_repeat,Simple_repeat,1,37,0,90173322,90173358 +6 + chr16 90177438 90177557 chr16,90177264,90177557,+,AluSx,SINE,Alu,37,311,-1,90177228,90177558 +2 + chr16 90177920 90178046 chr16,90177920,90178046,+,L2a,LINE,L2,3190,3318,-108,90174731,90178154 +6 + chr16 90178046 90178344 chr16,90178046,90178344,+,AluSq2,SINE,Alu,2,299,-14,90178045,90178358 +5 + chr16 90214682 90214808 chr16,90214529,90214808,+,MER4D1,LTR,ERV1,537,828,-72,90213993,90214880 +1 + chr16 90214811 90214831 chr16,90214811,90215244,-,MER4CL34,LTR,ERV1,-2,763,1,90214809,90215244 -4 - chr16 90215293 90215313 chr16,90215244,90215313,+,MER4D1,LTR,ERV1,824,900,0,90214421,90215313 +2 + chr16 90215707 90216003 chr16,90215707,90216003,-,AluY,SINE,Alu,-14,297,1,90215693,90216003 -1 - chr16 90216287 90216316 chr16,90216287,90216316,+,(GACA)n,Simple_repeat,Simple_repeat,1,29,0,90216287,90216316 +6 + chr16 90216347 90216481 chr16,90216347,90216481,-,MLT1H2,LTR,ERVL-MaLR,-34,515,374,90216313,90216854 -6 - chr17 65830 65887 chr17,65747,66167,-,MER1A,DNA,hAT-Charlie,-90,439,1,65657,66167 +3 - chr17 71366 71396 chr17,71294,71396,-,MER8,DNA,TcMar-Tigger,-2,237,137,71292,71532 +4 - chr17 71396 71556 chr17,71396,71585,+,AluJb,SINE,Alu,117,304,-8,71280,71593 -2 + chr17 76723 76742 chr17,76310,76742,-,MER1A,DNA,hAT-Charlie,-39,490,56,76271,76797 +4 - chr17 97494 97701 chr17,97364,97701,+,AluSq2,SINE,Alu,1,305,-8,97364,97709 -5 + chr17 102058 102273 chr17,101923,102351,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,101923,102353 -3 + chr17 105663 105691 chr17,105663,105699,+,L2c,LINE,L2,3268,3303,-84,102396,105783 -2 + chr17 183859 183975 chr17,183859,183975,-,MIR1_Amn,SINE,MIR,-52,178,38,183807,184012 +6 - chr17 184026 184105 chr17,184026,184105,+,(CTCTTGG)n,Simple_repeat,Simple_repeat,1,82,0,184026,184105 -6 + chr17 184345 184458 chr17,184345,184572,+,MIRb,SINE,MIR,22,265,-3,184324,184575 -2 + chr17 191238 191406 chr17,191238,191406,-,MER113A,DNA,hAT-Charlie,-64,250,77,191174,191482 +6 - chr17 191420 191537 chr17,191420,191537,-,MIR,SINE,MIR,-145,123,4,191275,191540 +6 - chr17 322348 322453 chr17,322348,322602,-,L2c,LINE,L2,-47,3340,3082,322301,325683 -5 - chr17 332279 332303 chr17,332279,332303,+,(GT)n,Simple_repeat,Simple_repeat,1,24,0,332279,332303 +6 + chr17 332427 332555 chr17,332427,332555,+,L2b,LINE,L2,3233,3367,-8,329195,332563 +6 + chr17 333316 333488 chr17,333316,333724,-,L1ME4a,LINE,L1,-71,6053,5632,333245,339355 -5 - chr17 354737 354764 chr17,354699,354764,+,(CAGAGGC)n,Simple_repeat,Simple_repeat,1,68,0,354699,354764 +1 + chr17 355237 355469 chr17,355237,355620,+,MLT1K,LTR,ERVL-MaLR,171,591,-4,355067,355624 +4 + chr17 404535 404592 chr17,404523,404631,-,L2,LINE,L2,-1406,2013,1904,403117,406534 +5 - chr17 409197 409234 chr17,409106,409234,-,AluJb,SINE,Alu,-139,162,14,408967,409247 +4 - chr17 409327 409515 chr17,409327,409515,-,L2,LINE,L2,-565,2854,2661,408762,412175 +6 - chr17 409698 409823 chr17,409698,409823,+,AluJo,SINE,Alu,1,147,-165,409698,409988 -6 + chr17 523151 523192 chr17,523151,523192,+,(CTG)n,Simple_repeat,Simple_repeat,1,43,0,523151,523192 +6 + chr17 540389 540504 chr17,540185,540504,-,AluJo,SINE,Alu,-10,302,1,540175,540504 -2 - chr17 763576 763612 chr17,763576,763612,+,(ATTT)n,Simple_repeat,Simple_repeat,1,36,0,763576,763612 -6 + chr17 763612 763706 chr17,763612,763706,-,LTR23,LTR,ERV1,-32,405,313,763580,764018 +6 - chr17 763846 763905 chr17,763846,763905,+,L1MC,LINE,L1,5120,5178,-968,758727,764873 -6 + chr17 764047 764174 chr17,764047,764174,+,L1ME2,LINE,L1,5299,5430,-874,758749,765048 -6 + chr17 764175 764319 chr17,764175,764319,+,AluJr4,SINE,Alu,37,203,-109,764139,764428 -6 + chr17 764325 764726 chr17,764325,764726,+,L1ME2,LINE,L1,5435,5868,-305,758891,765031 -6 + chr17 764726 765036 chr17,764726,765036,+,AluYf1,SINE,Alu,1,311,0,764726,765036 -6 + chr17 765036 765266 chr17,765036,765266,+,L1ME2,LINE,L1,5868,6104,-60,759169,765326 -6 + chr17 790279 790497 chr17,790273,790497,+,L2c,LINE,L2,2737,2957,-462,787537,790959 -4 + chr17 878138 878272 chr17,878138,878377,-,L2b,LINE,L2,-222,3153,2922,877916,881298 -4 - chr17 909632 909837 chr17,909532,909837,-,AluYm1,SINE,Alu,-6,305,1,909526,909837 -1 - chr17 1182267 1182311 chr17,1182160,1182356,-,MIR,SINE,MIR,-2,260,32,1182158,1182387 -3 - chr17 1184933 1185037 chr17,1184826,1185037,-,MIR,SINE,MIR,-14,248,13,1184812,1185049 -2 - chr17 1185049 1185080 chr17,1185049,1185080,+,(AATG)n,Simple_repeat,Simple_repeat,1,31,0,1185049,1185080 +6 + chr17 1241940 1242114 chr17,1241940,1242114,-,L1MC4,LINE,L1,-442,7600,7416,1241498,1249529 +6 - chr17 1352070 1352081 chr17,1351768,1352081,-,AluJo,SINE,Alu,-10,302,2,1351758,1352082 -1 - chr17 1424727 1424917 chr17,1424727,1425029,+,AluJb,SINE,Alu,1,298,-14,1424727,1425043 +1 + chr17 1426447 1426484 chr17,1426447,1426583,+,AluJb,SINE,Alu,1,135,-177,1426447,1426760 +5 + chr17 1711537 1712277 chr17,1711537,1712277,-,L1ME4a,LINE,L1,-36,6088,5328,1711501,1717604 +5 - chr17 2001430 2001545 chr17,2001253,2001545,-,AluY,SINE,Alu,-21,290,1,2001232,2001545 -2 - chr17 2001545 2001564 chr17,2001545,2001719,-,MIRb,SINE,MIR,-73,195,8,2001472,2001726 -4 - chr17 2003513 2003671 chr17,2003513,2003719,-,MIRb,SINE,MIR,-52,216,4,2003461,2003722 -5 - chr17 2044942 2044968 chr17,2044942,2044972,+,(CAAAA)n,Simple_repeat,Simple_repeat,1,30,0,2044942,2044972 -1 + chr17 2072886 2072946 chr17,2072886,2072946,+,MIRb,SINE,MIR,200,260,-8,2072687,2072954 +6 + chr17 2101122 2101401 chr17,2101108,2101401,-,AluJo,SINE,Alu,-24,288,1,2101084,2101401 -2 - chr17 2101447 2101526 chr17,2101447,2101526,-,MIRb,SINE,MIR,-92,176,97,2101355,2101622 -6 - chr17 2117626 2117759 chr17,2117253,2117759,+,L1ME2z,LINE,L1,4084,4629,-1517,2113170,2119276 +1 + chr17 2235753 2235787 chr17,2235753,2235787,+,(AAGGG)n,Simple_repeat,Simple_repeat,1,34,0,2235753,2235787 -6 + chr17 2255719 2256157 chr17,2255536,2256200,+,SVA_D,Retroposon,SVA,719,1386,0,2254818,2256200 +5 + chr17 2377359 2377500 chr17,2377214,2377500,+,AluSg,SINE,Alu,12,297,-13,2377203,2377513 -4 + chr17 2385323 2385346 chr17,2385323,2385362,+,(CCCCGG)n,Simple_repeat,Simple_repeat,1,39,0,2385323,2385362 +4 + chr17 2424179 2424412 chr17,2424087,2424412,-,AluYa5,SINE,Alu,0,311,1,2424087,2424412 +1 - chr17 2639600 2639880 chr17,2639600,2639880,-,AluSg4,SINE,Alu,-16,294,16,2639584,2639895 -6 - chr17 2639921 2640451 chr17,2639921,2640451,-,L1MC4,LINE,L1,0,8042,7520,2639921,2647970 -6 - chr17 2640451 2640718 chr17,2640451,2640718,-,AluSx3,SINE,Alu,-12,299,33,2640439,2640750 -6 - chr17 2640718 2641135 chr17,2640718,2641135,-,L1MC4,LINE,L1,-523,7519,7079,2640195,2648213 -6 - chr17 2641135 2641457 chr17,2641135,2641457,-,AluSx1,SINE,Alu,0,312,2,2641135,2641458 -6 - chr17 2641457 2641877 chr17,2641457,2641877,-,L1MC4,LINE,L1,-964,7078,6659,2640493,2648535 -6 - chr17 2641882 2642032 chr17,2641882,2642032,-,MER20,DNA,hAT-Charlie,-5,214,36,2641877,2642067 -6 - chr17 2642077 2642240 chr17,2642077,2642240,-,L1MC4,LINE,L1,-1279,6603,6443,2640798,2648682 -6 - chr17 2642240 2642418 chr17,2642240,2642617,+,Tigger4b,DNA,TcMar-Tigger,2,360,-1,2642239,2642618 +5 + chr17 2683554 2683583 chr17,2683554,2683583,+,(TGTT)n,Simple_repeat,Simple_repeat,1,29,0,2683554,2683583 -6 + chr17 2712353 2712399 chr17,2712353,2712439,-,MIR,SINE,MIR,-49,159,49,2712304,2712487 -4 - chr17 2721782 2721928 chr17,2721782,2721928,-,MIR1_Amn,SINE,MIR,-23,207,60,2721759,2721987 +6 - chr17 2723186 2723490 chr17,2723186,2723490,-,AluSq,SINE,Alu,-10,303,1,2723176,2723490 +6 - chr17 2962248 2962476 chr17,2962248,2962476,-,MIR,SINE,MIR,-1,261,16,2962247,2962491 +5 - chr17 2964915 2964985 chr17,2964915,2964985,-,MER5A,DNA,hAT-Charlie,-22,167,85,2964893,2965069 +6 - chr17 2965161 2965368 chr17,2965161,2965368,+,MIRb,SINE,MIR,26,233,-35,2965136,2965403 -6 + chr17 2965866 2965895 chr17,2965866,2965989,+,MamRTE1,LINE,RTE-BovB,123,255,-3557,2965744,2969546 -1 + chr17 3176791 3177031 chr17,3176530,3182557,+,L1PA2,LINE,L1,124,6155,0,3176407,3182557 -1 + chr17 3439923 3439967 chr17,3439753,3439967,-,L1M1,LINE,L1,-2011,4135,3921,3437742,3443887 +5 - chr17 3440642 3441067 chr17,3440642,3441067,+,L1MEg,LINE,L1,1,408,-5676,3440642,3446743 -6 + chr17 3441114 3441844 chr17,3441114,3442158,+,L1ME3A,LINE,L1,5088,6165,-8,3436027,3442166 -1 + chr17 3578022 3578224 chr17,3578022,3578307,+,AluSx3,SINE,Alu,1,281,-30,3578022,3578337 -2 + chr17 3578684 3578853 chr17,3578684,3579198,+,L1PA17,LINE,L1,5651,6160,-6,3573034,3579204 -1 + chr17 3601761 3601889 chr17,3601605,3601889,-,AluJo,SINE,Alu,-20,292,5,3601585,3601893 +5 - chr17 3602003 3602171 chr17,3602003,3602171,-,MIRb,SINE,MIR,-15,253,86,3601988,3602256 +6 - chr17 3721713 3721762 chr17,3721713,3721762,-,L2a,LINE,L2,-250,3176,3128,3721463,3724889 -6 - chr17 3721763 3721818 chr17,3721763,3721895,+,AluSx,SINE,Alu,1,132,-180,3721763,3722075 +4 + chr17 3722389 3722488 chr17,3722199,3722507,+,AluSx1,SINE,Alu,1,309,-3,3722199,3722510 +5 + chr17 3729608 3729652 chr17,3729608,3729893,-,AluSz,SINE,Alu,-25,287,2,3729583,3729894 -4 - chr17 3730388 3730474 chr17,3730173,3730474,+,AluSg7,SINE,Alu,1,302,-7,3730173,3730481 +2 + chr17 3802165 3802195 chr17,3802040,3802195,+,MER3,DNA,hAT-Charlie,3,156,-53,3802038,3802248 -5 + chr17 3803201 3803382 chr17,3803201,3803714,+,L1MC4,LINE,L1,7516,8040,-2,3795686,3803716 -1 + chr17 3806748 3806849 chr17,3806657,3806849,+,Charlie14a,DNA,hAT-Charlie,1,196,-970,3806657,3807819 -5 + chr17 3806893 3807010 chr17,3806893,3807010,+,Charlie14a,DNA,hAT-Charlie,945,1058,-108,3805949,3807118 -6 + chr17 3807527 3807758 chr17,3807527,3807758,-,L2b,LINE,L2,0,3375,3156,3807527,3810913 +6 - chr17 3807776 3807937 chr17,3807776,3807937,-,L2b,LINE,L2,-20,3355,3191,3807756,3811127 +6 - chr17 3807939 3808416 chr17,3807939,3808416,+,MamRep137,DNA,TcMar-Tigger,1,510,0,3807939,3808416 -6 + chr17 3808742 3808836 chr17,3808742,3808836,-,AluJo,SINE,Alu,-24,288,194,3808718,3809029 +6 - chr17 3808836 3808854 chr17,3808836,3808936,-,L2b,LINE,L2,-529,2890,2792,3808307,3811727 +1 - chr17 3981863 3981899 chr17,3981863,3981968,-,MIR3,SINE,MIR,-15,193,85,3981848,3982052 -5 - chr17 4267691 4267713 chr17,4267653,4267713,+,MIRb,SINE,MIR,116,175,-93,4267538,4267806 +1 + chr17 4267691 4267894 chr17,4267688,4267894,+,MIRb,SINE,MIR,16,255,-13,4267673,4267907 +1 + chr17 4481966 4482185 chr17,4481878,4482185,-,AluSc,SINE,Alu,-1,308,1,4481877,4482185 +5 - chr17 4482223 4482270 chr17,4482223,4482270,-,L3,LINE,CR1,-3,4096,4048,4482220,4486317 +6 - chr17 4482270 4482461 chr17,4482270,4482461,-,MER5A,DNA,hAT-Charlie,0,189,1,4482270,4482461 +6 - chr17 4482461 4482589 chr17,4482461,4482655,-,L3,LINE,CR1,-52,4047,3847,4482409,4486501 +2 - chr17 4497641 4497715 chr17,4497641,4497776,+,MIR3,SINE,MIR,48,195,-13,4497594,4497789 -2 + chr17 4610449 4610704 chr17,4610403,4610704,+,AluJb,SINE,Alu,1,310,-2,4610403,4610706 +1 + chr17 4675379 4675433 chr17,4675379,4675433,+,GA-rich,Low_complexity,Low_complexity,1,55,0,4675379,4675433 +1 + chr17 4696624 4696831 chr17,4696352,4697231,-,L2a,LINE,L2,-373,3046,2142,4695979,4699372 -5 - chr17 4732079 4732094 chr17,4732079,4732141,+,AluSx1,SINE,Alu,75,136,-176,4732005,4732317 -2 + chr17 4732231 4732371 chr17,4732141,4732433,+,AluSx1,SINE,Alu,1,295,-17,4732141,4732450 -1 + chr17 4787057 4787341 chr17,4787034,4787341,-,AluSc,SINE,Alu,-8,301,1,4787026,4787341 -1 - chr17 4787521 4787553 chr17,4787521,4787553,+,(TGTT)n,Simple_repeat,Simple_repeat,1,33,0,4787521,4787553 +6 + chr17 4787553 4787822 chr17,4787553,4787822,-,AluSx1,SINE,Alu,-29,283,1,4787524,4787822 -6 - chr17 4787889 4788017 chr17,4787889,4788017,-,L2a,LINE,L2,-1,3425,3240,4787888,4791256 -6 - chr17 4788018 4788115 chr17,4788018,4788115,+,L2c,LINE,L2,3272,3385,-2,4784747,4788117 +6 + chr17 4788266 4788405 chr17,4788266,4788405,+,AluSx4,SINE,Alu,1,139,-171,4788266,4788576 +6 + chr17 4788410 4788463 chr17,4788410,4788463,+,AluSz6,SINE,Alu,250,302,-10,4788161,4788473 +6 + chr17 4788544 4788714 chr17,4788544,4788714,-,MIRb,SINE,MIR,-15,253,63,4788529,4788776 -6 - chr17 4968557 4968627 chr17,4968557,4968627,+,G-rich,Low_complexity,Low_complexity,1,74,0,4968557,4968627 +6 + chr17 5019266 5019354 chr17,5019266,5019354,-,MIRc,SINE,MIR,-106,162,62,5019160,5019415 +6 - chr17 5019392 5019447 chr17,5019392,5019447,+,L2c,LINE,L2,3292,3347,-40,5016101,5019487 -6 + chr17 5075844 5075940 chr17,5075844,5076034,-,L2,LINE,L2,-1964,1455,1252,5073880,5077285 +2 - chr17 5077887 5077977 chr17,5077791,5077977,+,L2b,LINE,L2,3007,3198,-189,5074785,5078166 -4 + chr17 5113359 5113468 chr17,5113250,5113468,-,MIRb,SINE,MIR,-1,267,39,5113249,5113506 -1 - chr17 5114547 5114852 chr17,5114547,5114852,+,AluSx1,SINE,Alu,1,306,-6,5114547,5114858 +6 + chr17 5114852 5115004 chr17,5114852,5115047,+,MLT1A,LTR,ERVL-MaLR,161,374,0,5114692,5115047 +5 + chr17 5214050 5214209 chr17,5213887,5214264,+,MLT1A,LTR,ERVL-MaLR,1,374,0,5213887,5214264 +3 + chr17 5223540 5223643 chr17,5223540,5223848,-,AluSx1,SINE,Alu,-10,302,2,5223530,5223849 -5 - chr17 5234593 5234626 chr17,5234402,5234626,-,MIRb,SINE,MIR,-26,242,1,5234376,5234626 -2 - chr17 5240508 5240530 chr17,5240457,5240530,+,LTR7C,LTR,ERV1,123,227,-244,5240335,5240774 -5 + chr17 5240514 5240586 chr17,5240514,5240602,+,LTR7C,LTR,ERV1,127,225,-246,5240388,5240848 -2 + chr17 5240960 5240980 chr17,5240913,5240980,+,LTR7C,LTR,ERV1,123,190,-282,5240791,5241262 -4 + chr17 5240994 5241040 chr17,5240994,5241066,+,LTR7C,LTR,ERV1,123,219,-252,5240872,5241318 -2 + chr17 5241206 5241273 chr17,5241200,5241273,+,LTR7C,LTR,ERV1,123,219,-252,5241078,5241525 -4 + chr17 5241257 5241543 chr17,5241257,5241581,+,LTR7C,LTR,ERV1,127,471,0,5241131,5241581 -1 + chr17 5247774 5248069 chr17,5247691,5248153,+,MER1A,DNA,hAT-Charlie,37,514,-15,5247655,5248168 +5 + chr17 5364315 5364352 chr17,5364189,5364352,-,L2c,LINE,L2,-254,3133,2965,5363935,5367316 +5 - chr17 5371246 5371263 chr17,5370955,5371263,-,AluY,SINE,Alu,-1,310,3,5370954,5371265 +4 - chr17 5371263 5371536 chr17,5371263,5371536,-,L1MC5a,LINE,L1,-1832,945,654,5369431,5372189 +6 - chr17 5425153 5425260 chr17,5425153,5425260,+,L2c,LINE,L2,3245,3385,-2,5421909,5425262 -6 + chr17 5425332 5425493 chr17,5425332,5425635,-,AluSz,SINE,Alu,-9,303,1,5425323,5425635 +2 - chr17 5431294 5431500 chr17,5431205,5431500,+,AluSz,SINE,Alu,2,298,-14,5431204,5431514 -4 + chr17 5431872 5432001 chr17,5431872,5432001,+,MER85,DNA,PiggyBac,1,139,0,5431872,5432001 -6 + chr17 6189374 6189412 chr17,6189374,6189412,-,L1PA6,LINE,L1,-2,6152,6115,6189372,6195526 +6 - chr17 6189432 6189611 chr17,6189432,6189611,+,L2c,LINE,L2,3019,3207,-180,6186414,6189791 -5 + chr17 6189754 6189863 chr17,6189754,6189985,+,MIRb,SINE,MIR,13,263,-5,6189742,6189990 -1 + chr17 6190517 6190541 chr17,6190517,6190627,+,MIR,SINE,MIR,158,268,0,6190360,6190627 -1 + chr17 6652335 6652359 chr17,6652335,6652359,+,(GCCA)n,Simple_repeat,Simple_repeat,1,25,0,6652335,6652359 +6 + chr17 6652935 6652969 chr17,6652935,6652969,-,L2a,LINE,L2,-17,3409,3377,6652918,6656345 -6 - chr17 6652969 6653318 chr17,6652969,6653318,-,MER47A,DNA,TcMar-Tigger,-1,365,1,6652968,6653318 -6 - chr17 6653464 6653885 chr17,6653318,6653885,-,L2a,LINE,L2,-50,3376,2775,6653268,6656659 +5 - chr17 6653318 6653473 chr17,6653318,6653885,-,L2a,LINE,L2,-50,3376,2775,6653268,6656659 -5 - chr17 6653891 6654140 chr17,6653891,6654140,+,MER20,DNA,hAT-Charlie,1,219,0,6653891,6654140 -6 + chr17 6773300 6774578 chr17,6773300,6774578,+,L1PREC2,LINE,L1,3870,5151,-995,6769431,6775573 -6 + chr17 6774578 6774758 chr17,6774578,6774758,+,L1PA15,LINE,L1,5603,5782,-383,6768976,6775141 -6 + chr17 6774758 6775059 chr17,6774758,6775059,+,AluSx1,SINE,Alu,1,301,-11,6774758,6775070 -6 + chr17 6775059 6775445 chr17,6775059,6775445,+,L1PA15,LINE,L1,5783,6162,-3,6769277,6775448 -6 + chr17 6775785 6775822 chr17,6775785,6775822,+,G-rich,Low_complexity,Low_complexity,1,38,0,6775785,6775822 -6 + chr17 6876635 6876877 chr17,6875661,6876877,-,HERVK9-int,LTR,ERVK,0,6021,4804,6875661,6881680 +5 - chr17 6876860 6876887 chr17,6876860,6881020,-,HERVK9-int,LTR,ERVK,-1843,4178,1,6875017,6881020 +2 - chr17 6880910 6881020 chr17,6876860,6881020,-,HERVK9-int,LTR,ERVK,-1843,4178,1,6875017,6881020 +4 - chr17 6881020 6881062 chr17,6881020,6881530,-,MER9a1,LTR,ERVK,0,513,1,6881020,6881530 +2 - chr17 6926161 6926283 chr17,6926003,6926308,+,AluSx,SINE,Alu,1,304,-8,6926003,6926316 -3 + chr17 6954241 6954299 chr17,6954241,6954922,-,HAL1,LINE,L1,-604,1903,1212,6953637,6956133 +2 - chr17 6954382 6954448 chr17,6954241,6954922,-,HAL1,LINE,L1,-604,1903,1212,6953637,6956133 +3 - chr17 6956588 6956697 chr17,6956356,6956708,+,MLT1K,LTR,ERVL-MaLR,216,595,0,6956141,6956708 -3 + chr17 6985139 6985281 chr17,6985139,6985281,+,LTR85b,LTR,Gypsy?,88,231,-553,6985052,6985834 -6 + chr17 6985427 6985540 chr17,6985427,6985558,+,FLAM_A,SINE,Alu,1,132,-10,6985427,6985568 -5 + chr17 6994642 6994656 chr17,6994536,6994656,+,LTR85c,LTR,Gypsy?,692,811,-12,6993845,6994668 -5 + chr17 7001132 7001250 chr17,7000948,7001250,-,AluSz6,SINE,Alu,-14,298,1,7000934,7001250 +5 - chr17 7001477 7001541 chr17,7001477,7001541,+,L2c,LINE,L2,3274,3337,-50,6998204,7001591 -6 + chr17 7002506 7002620 chr17,7002506,7002638,+,FLAM_C,SINE,Alu,2,133,-10,7002505,7002648 -2 + chr17 7017300 7017344 chr17,7017300,7017344,+,(CCTCTCA)n,Simple_repeat,Simple_repeat,1,45,0,7017300,7017344 -6 + chr17 7192388 7192448 chr17,7192388,7192559,+,GA-rich,Low_complexity,Low_complexity,1,176,0,7192388,7192559 -1 + chr17 7242375 7242422 chr17,7242375,7242422,+,(GGC)n,Simple_repeat,Simple_repeat,1,49,0,7242375,7242422 +6 + chr17 7440206 7440239 chr17,7440206,7440239,+,(GCCCCC)n,Simple_repeat,Simple_repeat,1,34,0,7440206,7440239 +6 + chr17 7440906 7440932 chr17,7440906,7440932,+,(GACA)n,Simple_repeat,Simple_repeat,1,26,0,7440906,7440932 +6 + chr17 7441160 7441197 chr17,7441160,7441197,+,(CTCCCTC)n,Simple_repeat,Simple_repeat,1,38,0,7441160,7441197 +6 + chr17 7557827 7557846 chr17,7557827,7557846,+,(TAT)n,Simple_repeat,Simple_repeat,1,19,0,7557827,7557846 -6 + chr17 7581640 7581952 chr17,7581640,7581952,+,AluSz,SINE,Alu,2,293,-19,7581639,7581971 +6 + chr17 7685260 7685456 chr17,7684469,7685456,+,L1ME2,LINE,L1,4879,5918,-246,7679591,7685702 -5 + chr17 7685456 7685736 chr17,7685456,7685736,-,AluSq2,SINE,Alu,-22,291,1,7685434,7685736 +6 - chr17 7685736 7685956 chr17,7685736,7685956,+,L1ME2,LINE,L1,5919,6157,-7,7679818,7685963 -6 + chr17 7860113 7860145 chr17,7860113,7860145,-,MIRb,SINE,MIR,-37,231,200,7860076,7860344 -6 - chr17 7860145 7860410 chr17,7860145,7860410,-,AluJr,SINE,Alu,-16,296,38,7860129,7860447 -6 - chr17 7860410 7860577 chr17,7860410,7860577,-,MIRb,SINE,MIR,-69,199,24,7860341,7860600 -6 - chr17 7861613 7862276 chr17,7861613,7862276,+,L2c,LINE,L2,2572,3382,-5,7859042,7862281 +6 + chr17 7862455 7862771 chr17,7862455,7862771,+,AluSq2,SINE,Alu,1,312,-1,7862455,7862772 +6 + chr17 7863635 7863731 chr17,7863635,7863731,+,Charlie24,DNA,hAT-Charlie,2330,2422,-28,7861306,7863759 +6 + chr17 7863758 7863783 chr17,7863758,7863783,+,(CA)n,Simple_repeat,Simple_repeat,1,26,0,7863758,7863783 +6 + chr17 7864363 7864596 chr17,7864363,7864596,-,AluJr4,SINE,Alu,-55,257,1,7864308,7864596 -6 - chr17 7864596 7864621 chr17,7864596,7864621,-,Tigger4b,DNA,TcMar-Tigger,-186,175,159,7864410,7864779 -6 - chr17 7864621 7864911 chr17,7864621,7864911,+,AluSz,SINE,Alu,1,299,-13,7864621,7864924 +6 + chr17 7864911 7865040 chr17,7864911,7865040,-,Tigger4,DNA,TcMar-Tigger,-203,158,1,7864708,7865040 -6 - chr17 7865184 7865317 chr17,7865184,7865317,-,MIR,SINE,MIR,-62,200,65,7865122,7865381 -6 - chr17 7865397 7865751 chr17,7865397,7865751,-,MLT1G1,LTR,ERVL-MaLR,-70,509,3,7865327,7865753 -6 - chr17 7865827 7865903 chr17,7865827,7865903,+,MIRc,SINE,MIR,13,82,-186,7865815,7866089 +6 + chr17 7865896 7866015 chr17,7865896,7866015,-,L2c,LINE,L2,0,3387,3271,7865896,7869285 -6 - chr17 7913344 7913594 chr17,7913344,7913594,-,L2a,LINE,L2,-11,3415,3111,7913333,7916704 +6 - chr17 7913809 7914109 chr17,7913809,7914109,+,AluY,SINE,Alu,1,299,-12,7913809,7914121 -6 + chr17 7914200 7914262 chr17,7914200,7914262,-,MER5A1,DNA,hAT-Charlie,0,166,111,7914200,7914372 +6 - chr17 7914262 7914571 chr17,7914262,7914571,+,AluSx1,SINE,Alu,1,307,-5,7914262,7914576 -6 + chr17 7914571 7914661 chr17,7914571,7914661,-,MER5A1,DNA,hAT-Charlie,-71,118,26,7914500,7914686 +6 - chr17 7914679 7914863 chr17,7914679,7914863,+,MamRep4096,DNA,hAT-Tip100,181,371,-55,7914499,7914918 -6 + chr17 8056336 8056551 chr17,8056336,8056551,+,LTR5_Hs,LTR,ERVK,279,510,-458,8056058,8057009 -6 + chr17 8081452 8081565 chr17,8081452,8081651,-,L1PB4,LINE,L1,-1,6155,5954,8081451,8087604 -5 - chr17 8181399 8181515 chr17,8181056,8181585,-,L2a,LINE,L2,-310,3116,2525,8180746,8184109 -3 - chr17 8182662 8182718 chr17,8182622,8182718,-,L1MC5,LINE,L1,-89,9215,9118,8182533,8191835 -2 - chr17 8182724 8182812 chr17,8182724,8183544,-,L1MC5a,LINE,L1,-319,2458,1576,8182405,8185119 -5 - chr17 8220642 8220761 chr17,8220641,8220761,-,L1PB4,LINE,L1,0,6166,6045,8220641,8226805 +5 - chr17 8220868 8220940 chr17,8220868,8220940,-,tRNA-Trp-TGG,tRNA,tRNA,-3,72,1,8220865,8220940 +6 - chr17 8221308 8221359 chr17,8221308,8221359,+,MIRc,SINE,MIR,103,153,-115,8221206,8221474 -6 + chr17 8222293 8222309 chr17,8222237,8222309,-,tRNA-Asp-GAY,tRNA,tRNA,-3,72,1,8222234,8222309 +4 - chr17 8222830 8222904 chr17,8222830,8222904,-,tRNA-Pro-CCG,tRNA,tRNA,-1,74,1,8222829,8222904 +6 - chr17 8224830 8225157 chr17,8224830,8225157,-,AluSx3,SINE,Alu,-9,302,1,8224821,8225157 +6 - chr17 8277763 8277986 chr17,8277666,8277986,+,AluSp,SINE,Alu,1,309,-4,8277666,8277990 +1 + chr17 8278123 8278436 chr17,8278123,8278454,+,LTR47A,LTR,ERVL,2,381,-71,8278122,8278525 +5 + chr17 8318088 8318266 chr17,8318083,8318266,-,MIRb,SINE,MIR,-13,255,78,8318070,8318343 +5 - chr17 8337742 8337768 chr17,8337742,8337768,+,(AATA)n,Simple_repeat,Simple_repeat,1,26,0,8337742,8337768 +6 + chr17 8338423 8338758 chr17,8338304,8338827,+,LTR45C,LTR,ERV1,1,539,0,8338304,8338827 +5 + chr17 8365641 8365721 chr17,8365641,8365768,-,MIRc,SINE,MIR,-15,253,125,8365626,8365892 -4 - chr17 8373491 8373816 chr17,8373140,8374641,+,SVA_B,Retroposon,SVA,1,1383,0,8373140,8374641 +5 + chr17 8375722 8375751 chr17,8375524,8375751,-,AluJb,SINE,Alu,-4,308,87,8375520,8375837 -2 - chr17 8381045 8381328 chr17,8380694,8381392,+,LTR8,LTR,ERV1,1,691,0,8380694,8381392 +5 + chr17 8966822 8966875 chr17,8966822,8966875,+,MIR1_Amn,SINE,MIR,102,155,-75,8966721,8966950 +6 + chr17 8976758 8976824 chr17,8976754,8976824,+,LTR88b,LTR,Gypsy?,740,811,-26,8976015,8976850 +2 + chr17 8976866 8976995 chr17,8976866,8977340,+,L1MC,LINE,L1,3847,4359,-1787,8973020,8979127 +5 + chr17 9171467 9171791 chr17,9171467,9171791,-,L2a,LINE,L2,-100,3326,2965,9171367,9174755 +6 - chr17 9172799 9172881 chr17,9172799,9172930,+,AluSx,SINE,Alu,174,303,-9,9172626,9172939 -2 + chr17 9174405 9174811 chr17,9174405,9174811,-,MLT1B,LTR,ERVL-MaLR,0,390,1,9174405,9174811 +6 - chr17 9174860 9174903 chr17,9174860,9174903,+,(GTGGCT)n,Simple_repeat,Simple_repeat,1,44,0,9174860,9174903 -6 + chr17 9175529 9175645 chr17,9175529,9175645,-,MIR3,SINE,MIR,-7,201,86,9175522,9175730 +6 - chr17 9176138 9176178 chr17,9176138,9176178,+,(CTCCC)n,Simple_repeat,Simple_repeat,1,40,0,9176138,9176178 -6 + chr17 9176187 9176237 chr17,9176187,9176237,+,(TGTGTC)n,Simple_repeat,Simple_repeat,1,52,0,9176187,9176237 -6 + chr17 9176687 9176858 chr17,9176687,9176858,-,MLT1J,LTR,ERVL-MaLR,-4,508,307,9176683,9177164 +6 - chr17 9179056 9179118 chr17,9179056,9179228,+,MIR3,SINE,MIR,30,208,0,9179027,9179228 -1 + chr17 9283260 9283274 chr17,9283260,9283563,+,AluSg,SINE,Alu,1,304,-6,9283260,9283569 +4 + chr17 9305494 9305608 chr17,9305390,9305608,+,MER47A,DNA,TcMar-Tigger,173,365,-1,9305218,9305609 +2 + chr17 9464742 9464865 chr17,9464722,9465020,-,AluSx1,SINE,Alu,-12,300,1,9464710,9465020 -1 - chr17 9467034 9467190 chr17,9466895,9467190,-,AluSq10,SINE,Alu,-18,295,1,9466877,9467190 -2 - chr17 9467190 9467307 chr17,9467190,9467307,-,MIR,SINE,MIR,-56,206,91,9467134,9467397 -6 - chr17 9547361 9547427 chr17,9547361,9547656,+,AluSg,SINE,Alu,1,309,-1,9547361,9547657 +4 + chr17 9548437 9548541 chr17,9548404,9548954,+,L1MC4a,LINE,L1,5524,5845,-2037,9542881,9550991 +5 + chr17 9553509 9553582 chr17,9553509,9553582,-,Tigger14a,DNA,TcMar-Tigger,-3,321,238,9553506,9553819 +6 - chr17 9553861 9553965 chr17,9553861,9553965,+,MIRb,SINE,MIR,39,147,-121,9553823,9554086 -6 + chr17 9553979 9554258 chr17,9553979,9554258,+,AluSg,SINE,Alu,1,279,-31,9553979,9554289 -6 + chr17 9554259 9554304 chr17,9554259,9554304,+,(AAAC)n,Simple_repeat,Simple_repeat,1,48,0,9554259,9554304 -6 + chr17 9554622 9554925 chr17,9554622,9554925,+,AluSx,SINE,Alu,1,303,-9,9554622,9554934 -6 + chr17 9555614 9555696 chr17,9555614,9555912,+,AluYf1,SINE,Alu,1,298,-13,9555614,9555925 -1 + chr17 9638768 9638889 chr17,9638759,9639008,+,MIR,SINE,MIR,2,262,0,9638758,9639008 -5 + chr17 9647504 9647573 chr17,9647384,9647573,+,MIR,SINE,MIR,2,243,-19,9647383,9647592 -4 + chr17 10291820 10291913 chr17,10291623,10291998,+,THE1B,LTR,ERVL-MaLR,1,364,0,10291623,10291998 +1 + chr17 10317681 10317926 chr17,10317681,10317957,+,Arthur1C,DNA,hAT-Tip100,1,320,-43,10317681,10318000 +5 + chr17 10324843 10324967 chr17,10324829,10325122,-,AluJr,SINE,Alu,-18,294,1,10324811,10325122 -3 - chr17 10341064 10341350 chr17,10341030,10341350,-,AluSz,SINE,Alu,0,312,2,10341030,10341351 -2 - chr17 10567537 10567612 chr17,10567263,10567771,-,L1MD3,LINE,L1,0,7995,7466,10567263,10575236 -3 - chr17 10588389 10588423 chr17,10587782,10589039,-,L1MC3,LINE,L1,-870,6915,5648,10586912,10594686 -3 - chr17 10590643 10590759 chr17,10590416,10590759,+,LTR89,LTR,ERVL?,498,862,-17,10589919,10590776 +2 + chr17 10598073 10598222 chr17,10597993,10598232,+,L1ME3G,LINE,L1,407,637,-287,10597587,10598519 +3 + chr17 10611916 10611945 chr17,10611916,10612184,+,AluY,SINE,Alu,39,307,-4,10611878,10612188 +4 + chr17 10736602 10736615 chr17,10736483,10736615,+,L2c,LINE,L2,3230,3349,-38,10733254,10736653 +2 + chr17 10738573 10738800 chr17,10738431,10738800,+,MLT1B,LTR,ERVL-MaLR,1,389,-1,10738431,10738801 +2 + chr17 10741623 10741723 chr17,10741623,10741777,+,MIRb,SINE,MIR,41,193,-75,10741583,10741852 -2 + chr17 10754284 10754362 chr17,10754284,10754468,+,MIRb,SINE,MIR,12,204,-64,10754273,10754532 +4 + chr17 10766771 10766988 chr17,10766771,10766988,+,MIRb,SINE,MIR,23,247,-21,10766749,10767009 +5 + chr17 10768173 10768299 chr17,10768117,10768299,-,MIRb,SINE,MIR,-41,227,27,10768076,10768325 +5 - chr17 10768589 10769006 chr17,10768580,10769120,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,10768580,10769120 +1 + chr17 10768807 10769016 chr17,10768580,10769120,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,10768580,10769120 -1 + chr17 10793825 10794184 chr17,10793825,10794193,+,MamRep137,DNA,TcMar-Tigger,135,500,-10,10793691,10794203 +4 + chr17 10795150 10795421 chr17,10795150,10795421,+,L3,LINE,CR1,3302,3593,-506,10791849,10795927 -6 + chr17 10802399 10802484 chr17,10802319,10802484,-,MIRb,SINE,MIR,-44,224,49,10802275,10802532 -2 - chr17 10804029 10804057 chr17,10804029,10804057,+,(CCTG)n,Simple_repeat,Simple_repeat,1,30,0,10804029,10804057 -6 + chr17 10814899 10815164 chr17,10814865,10815281,+,L2a,LINE,L2,3004,3426,0,10811862,10815281 +5 + chr17 10849541 10849558 chr17,10849447,10849723,-,L2c,LINE,L2,-4,3383,3106,10849443,10852828 -1 - chr17 10878193 10878328 chr17,10878193,10878328,+,LTR85a,LTR,Gypsy?,1,132,-570,10878193,10878898 +1 + chr17 10880549 10880579 chr17,10880549,10880579,+,(TCCA)n,Simple_repeat,Simple_repeat,1,30,0,10880549,10880579 +6 + chr17 11288205 11288224 chr17,11287891,11288224,-,L1MC5,LINE,L1,-12,9292,8977,11287879,11297200 -1 - chr17 11288228 11288354 chr17,11288228,11288354,-,L1ME4b,LINE,L1,-326,566,441,11287902,11288794 -6 - chr17 11288425 11288462 chr17,11288425,11288462,+,(TC)n,Simple_repeat,Simple_repeat,1,39,0,11288425,11288462 +6 + chr17 11288500 11288575 chr17,11288500,11288575,+,FAM,SINE,Alu,104,176,-9,11288397,11288584 +6 + chr17 11288670 11288981 chr17,11288670,11288981,-,L1M3,LINE,L1,-1825,4315,4006,11286845,11292986 -6 - chr17 11289071 11289465 chr17,11289071,11289465,-,L1M5,LINE,L1,-2143,4003,3600,11286928,11293064 -6 - chr17 11289559 11289602 chr17,11289559,11289602,+,(ATAT)n,Simple_repeat,Simple_repeat,1,43,0,11289559,11289602 +6 + chr17 11289619 11289859 chr17,11289619,11289859,-,L1M5,LINE,L1,-2660,3486,3231,11286959,11293089 -6 - chr17 11289895 11290344 chr17,11289895,11290344,-,L1M5,LINE,L1,-3085,3061,2608,11286810,11292951 -6 - chr17 11290344 11290649 chr17,11290344,11290649,-,AluY,SINE,Alu,-6,305,1,11290338,11290649 -6 - chr17 11290649 11290749 chr17,11290649,11290749,-,L1M5,LINE,L1,-3539,2607,2512,11287110,11293260 -6 - chr17 11953889 11954004 chr17,11953780,11954678,+,L1MEf,LINE,L1,926,1781,-4634,11952855,11959312 -5 + chr17 12213870 12213958 chr17,12213864,12213958,+,LTR78,LTR,ERV1,4,98,-1206,12213861,12215164 +2 + chr17 12214019 12214057 chr17,12214019,12214139,+,AluSx,SINE,Alu,104,223,-89,12213916,12214228 +4 + chr17 12214950 12214971 chr17,12214675,12214971,-,AluSz,SINE,Alu,-17,295,1,12214658,12214971 -2 - chr17 12214971 12215162 chr17,12214971,12215162,-,MLT1C,LTR,ERVL-MaLR,-289,178,1,12214682,12215162 -6 - chr17 12584560 12584637 chr17,12584526,12584637,+,L1M7,LINE,L1,42,157,-6061,12584485,12590698 +2 + chr17 12590441 12590688 chr17,12590348,12590688,-,MLT1I,LTR,ERVL-MaLR,0,411,36,12590348,12590723 -2 - chr17 12635897 12636868 chr17,12635897,12636868,-,L1PA13,LINE,L1,0,6163,5170,12635897,12642037 -6 - chr17 12642398 12642442 chr17,12642037,12642442,+,L1M6,LINE,L1,1091,1819,-900,12640947,12643342 +2 + chr17 12642800 12642854 chr17,12642800,12643005,+,L2,LINE,L2,2630,2844,-575,12640171,12643580 +5 + chr17 12672088 12672123 chr17,12672088,12672123,+,MIR3,SINE,MIR,110,144,-64,12671979,12672187 -6 + chr17 12706018 12706066 chr17,12706018,12706066,+,(TAGT)n,Simple_repeat,Simple_repeat,1,49,0,12706018,12706066 -6 + chr17 12760140 12760537 chr17,12760042,12760537,+,L1MB3,LINE,L1,5688,6183,0,12754355,12760537 -5 + chr17 12761227 12761384 chr17,12761227,12761384,-,L2,LINE,L2,-1089,2330,2164,12760138,12763547 +6 - chr17 12761411 12761479 chr17,12761411,12761479,-,L2a,LINE,L2,-85,3341,3272,12761326,12764750 +6 - chr17 12761476 12761590 chr17,12761476,12761590,-,L2,LINE,L2,-1789,1630,1524,12759687,12763113 +6 - chr17 12761590 12761637 chr17,12761590,12761637,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,12761590,12761637 -6 + chr17 12761637 12761922 chr17,12761637,12761922,-,AluSc,SINE,Alu,-25,284,1,12761612,12761922 +6 - chr17 12761922 12762991 chr17,12761922,12762991,-,L2,LINE,L2,-1896,1523,247,12760026,12763237 +6 - chr17 12973455 12973597 chr17,12973455,12973597,-,MIR3,SINE,MIR,-2,206,47,12973453,12973643 +6 - chr17 12982620 12982832 chr17,12982620,12982832,-,MIRb,SINE,MIR,-20,248,8,12982600,12982839 +6 - chr17 12982983 12983002 chr17,12982983,12983286,+,AluY,SINE,Alu,1,303,-8,12982983,12983294 -1 + chr17 13100523 13100595 chr17,13100523,13100595,-,MER89,LTR,ERV1,-12,547,476,13100511,13101070 -6 - chr17 13100602 13100679 chr17,13100602,13100679,-,MER66B,LTR,ERV1,-382,104,27,13100220,13100705 -6 - chr17 13100685 13100928 chr17,13100685,13101146,-,MER34,LTR,ERV1,-20,522,25,13100665,13101170 -5 - chr17 13299184 13299234 chr17,13299109,13299305,+,MIRb,SINE,MIR,17,222,-46,13299093,13299351 -5 + chr17 13299923 13299987 chr17,13299923,13300223,-,X9_LINE,LINE,L1,-470,466,190,13299453,13300412 +2 - chr17 13301119 13301239 chr17,13300963,13301270,+,AluSc,SINE,Alu,1,307,-2,13300963,13301272 -3 + chr17 13303833 13303883 chr17,13303596,13303883,-,AluSz,SINE,Alu,-22,290,1,13303574,13303883 +4 - chr17 13756665 13756729 chr17,13756665,13756822,-,Plat_L3,LINE,CR1,-201,3385,3231,13756464,13760052 +2 - chr17 13790269 13790758 chr17,13789613,13790758,+,L1ME3G,LINE,L1,3083,4323,-1823,13786531,13792581 -4 + chr17 13790821 13791035 chr17,13790821,13791035,-,MIR,SINE,MIR,-26,236,23,13790795,13791057 +6 - chr17 13791274 13791594 chr17,13791274,13791594,+,L1ME3G,LINE,L1,429,654,-270,13790846,13791864 -6 + chr17 13791932 13792226 chr17,13791932,13792226,+,AluSc5,SINE,Alu,1,304,-5,13791932,13792231 -6 + chr17 13880316 13880371 chr17,13880316,13880401,+,Alu,SINE,Alu,218,308,-3,13880099,13880404 -2 + chr17 13892725 13892839 chr17,13892640,13892952,-,L1MEc,LINE,L1,-4430,1970,1640,13888210,13894591 +1 - chr17 13898609 13898732 chr17,13898456,13898743,+,AluJr4,SINE,Alu,7,292,-20,13898450,13898763 -3 + chr17 13909231 13909358 chr17,13909021,13909358,+,THE1A,LTR,ERVL-MaLR,1,355,0,13909021,13909358 +1 + chr17 13909358 13910902 chr17,13909358,13910902,+,THE1A-int,LTR,ERVL-MaLR,1,1580,0,13909358,13910902 +6 + chr17 13910902 13911212 chr17,13910902,13911247,+,THE1A,LTR,ERVL-MaLR,1,348,-7,13910902,13911254 +5 + chr17 13932976 13932990 chr17,13932976,13933092,+,MIRc,SINE,MIR,122,253,-15,13932855,13933107 -2 + chr17 13933076 13933092 chr17,13932976,13933092,+,MIRc,SINE,MIR,122,253,-15,13932855,13933107 -4 + chr17 13940571 13940594 chr17,13940368,13940765,-,MLT1J,LTR,ERVL-MaLR,-97,415,1,13940271,13940765 +1 - chr17 13957838 13957996 chr17,13957838,13957996,+,MIR,SINE,MIR,5,165,-97,13957834,13958093 -6 + chr17 13958158 13958206 chr17,13958102,13958206,+,MIR1_Amn,SINE,MIR,36,152,-78,13958067,13958284 -4 + chr17 13966879 13966952 chr17,13966568,13967334,-,HUERS-P2-int,LTR,ERV1,-1707,1381,616,13964861,13967949 +1 - chr17 14028741 14029098 chr17,14028502,14029098,+,L1MDa,LINE,L1,2349,2958,-3579,14026154,14032677 -5 + chr17 14029099 14029801 chr17,14029099,14029801,+,L1MDa,LINE,L1,3369,4114,-2423,14025731,14032224 -5 + chr17 14029831 14030150 chr17,14029831,14030150,+,Tigger7,DNA,TcMar-Tigger,17,342,-2149,14029815,14032299 -6 + chr17 14030150 14030518 chr17,14030150,14030518,+,THE1B,LTR,ERVL-MaLR,1,363,-1,14030150,14030519 -6 + chr17 14030518 14030657 chr17,14030518,14030672,+,Tigger7,DNA,TcMar-Tigger,343,495,-1996,14030176,14032668 -1 + chr17 14033903 14034084 chr17,14033903,14034084,+,MLT1L,LTR,ERVL-MaLR,1,205,-405,14033903,14034489 -6 + chr17 14210488 14210565 chr17,14210395,14210651,-,AluSx,SINE,Alu,0,312,66,14210395,14210716 -1 - chr17 14211288 14211300 chr17,14211098,14211300,+,L2a,LINE,L2,3150,3377,-49,14207949,14211349 +2 + chr17 14211376 14211416 chr17,14211376,14211416,+,(GGTGGA)n,Simple_repeat,Simple_repeat,1,40,0,14211376,14211416 +6 + chr17 14217329 14217665 chr17,14217329,14217665,+,MARNA,DNA,TcMar-Mariner,77,438,-148,14217253,14217813 +6 + chr17 14295552 14295577 chr17,14295552,14295577,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,14295552,14295577 -6 + chr17 14295626 14295689 chr17,14295626,14296023,-,LTR16A,LTR,ERVL,-4,447,1,14295622,14296023 +2 - chr17 14295894 14296023 chr17,14295626,14296023,-,LTR16A,LTR,ERVL,-4,447,1,14295622,14296023 +4 - chr17 14296229 14296485 chr17,14296229,14296485,-,L2,LINE,L2,-1980,1439,1155,14294249,14297639 +6 - chr17 14296579 14296913 chr17,14296579,14296913,-,LTR33,LTR,ERVL,0,515,151,14296579,14297063 +6 - chr17 14327752 14327800 chr17,14327752,14327800,-,L2c,LINE,L2,0,3387,3337,14327752,14331136 -6 - chr17 14328719 14328850 chr17,14328719,14328850,+,FLAM_C,SINE,Alu,3,133,-10,14328717,14328860 +6 + chr17 14329288 14329474 chr17,14329288,14329586,+,A-rich,Low_complexity,Low_complexity,1,303,0,14329288,14329586 +5 + chr17 14374139 14374201 chr17,14373785,14374201,-,LTR16C,LTR,ERVL,-1,488,56,14373784,14374256 -1 - chr17 14377284 14377421 chr17,14377252,14377556,-,AluY,SINE,Alu,-6,305,2,14377246,14377557 -3 - chr17 14397062 14397172 chr17,14397039,14397328,-,AluSc,SINE,Alu,-11,298,1,14397028,14397328 -3 - chr17 14420662 14421016 chr17,14420662,14421016,+,L1M6,LINE,L1,1411,1774,-4722,14419252,14425738 +6 + chr17 14725757 14725858 chr17,14725757,14726243,+,L1ME4a,LINE,L1,5565,6099,-25,14720193,14726268 +4 + chr17 14767583 14768007 chr17,14767476,14768007,+,L1M5,LINE,L1,3873,4378,-1768,14763604,14769775 -5 + chr17 14768007 14768312 chr17,14768007,14768312,+,AluJo,SINE,Alu,2,304,-8,14768006,14768320 -6 + chr17 14768312 14768393 chr17,14768312,14768393,+,L1M5,LINE,L1,4379,4459,-1687,14763934,14770080 -6 + chr17 14768452 14768566 chr17,14768452,14768566,+,L2,LINE,L2,2529,2642,-777,14765924,14769343 -6 + chr17 14768615 14768917 chr17,14768615,14768917,+,MER2,DNA,TcMar-Tigger,2,345,0,14768614,14768917 -6 + chr17 14769009 14769801 chr17,14769009,14769801,+,LTR41,LTR,ERVL,31,768,0,14768979,14769801 -6 + chr17 14769801 14770049 chr17,14769801,14770049,-,LTR16E1,LTR,ERVL,-140,398,141,14769661,14770189 +6 - chr17 14834638 14834942 chr17,14834325,14834951,+,LTR12D,LTR,ERV1,559,1238,-84,14833767,14835035 +1 + chr17 14837941 14837983 chr17,14837903,14837983,+,MIRb,SINE,MIR,106,189,-79,14837798,14838062 +2 + chr17 14900263 14900554 chr17,14900263,14900579,+,MLT1K,LTR,ERVL-MaLR,223,566,-29,14900041,14900608 +5 + chr17 15031391 15031492 chr17,15031391,15031547,+,MER63A,DNA,hAT-Blackjack,9,167,-43,15031383,15031590 +4 + chr17 15031751 15031957 chr17,15031751,15031994,+,MLT1K,LTR,ERVL-MaLR,325,580,-15,15031427,15032009 +5 + chr17 15051355 15051453 chr17,15051318,15051453,-,MIRb,SINE,MIR,-39,169,40,15051279,15051492 -2 - chr17 15105527 15105543 chr17,15105527,15105667,+,L1ME4a,LINE,L1,5960,6107,-17,15099568,15105684 -2 + chr17 15106028 15106187 chr17,15105958,15106330,-,MLT1A0,LTR,ERVL-MaLR,-8,357,4,15105950,15106333 +1 - chr17 15267654 15267904 chr17,15267654,15267904,-,MIR,SINE,MIR,-1,261,11,15267653,15267914 +6 - chr17 15268310 15268520 chr17,15268310,15268520,-,MIRb,SINE,MIR,-28,240,6,15268282,15268525 +6 - chr17 15272089 15272290 chr17,15272089,15272620,+,LTR55,LTR,ERVL?,3,538,-10,15272087,15272630 -1 + chr17 15276562 15276639 chr17,15276348,15276639,+,L2c,LINE,L2,3024,3324,-63,15273325,15276702 -5 + chr17 15277669 15277711 chr17,15277669,15277994,+,MER2,DNA,TcMar-Tigger,1,345,0,15277669,15277994 -2 + chr17 15279339 15279477 chr17,15279164,15279496,-,MLT1J2,LTR,ERVL-MaLR,0,448,71,15279164,15279566 +1 - chr17 15365323 15365466 chr17,15365141,15365466,-,AluSx3,SINE,Alu,-2,309,1,15365139,15365466 -1 - chr17 15365541 15365652 chr17,15365541,15365652,+,MER5A1,DNA,hAT-Charlie,2,106,-60,15365540,15365712 +6 + chr17 15365652 15365877 chr17,15365652,15365937,-,AluYc,SINE,Alu,-10,289,1,15365642,15365937 -5 - chr17 15417690 15417769 chr17,15417650,15417769,+,MIR,SINE,MIR,129,248,-14,15417522,15417783 -4 + chr17 15530773 15531038 chr17,15530758,15531038,-,AluJb,SINE,Alu,-16,296,5,15530742,15531042 +5 - chr17 15531038 15531089 chr17,15531038,15532101,-,L1M4,LINE,L1,-5581,1936,812,15525457,15532912 +1 - chr17 15651819 15651853 chr17,15651819,15651853,+,(CTCAGG)n,Simple_repeat,Simple_repeat,1,34,0,15651819,15651853 +6 + chr17 15654444 15654489 chr17,15654435,15654920,+,LTR15,LTR,ERV1,1,487,-6,15654435,15654926 +5 + chr17 15743603 15743650 chr17,15743594,15743650,+,(CCT)n,Simple_repeat,Simple_repeat,1,57,0,15743594,15743650 -4 + chr17 15743680 15743799 chr17,15743680,15743968,+,AluY,SINE,Alu,5,294,-17,15743676,15743985 -1 + chr17 15761614 15761829 chr17,15761599,15761829,-,L1ME4a,LINE,L1,-2932,3214,3000,15758667,15764828 +5 - chr17 15763586 15763615 chr17,15763474,15763615,-,L1MD,LINE,L1,-2028,4118,3974,15761446,15767588 +4 - chr17 15763638 15763769 chr17,15763638,15763953,-,AluJr,SINE,Alu,-1,311,3,15763637,15763955 +1 - chr17 15806241 15806384 chr17,15806085,15806384,-,AluY,SINE,Alu,-13,298,1,15806072,15806384 +5 - chr17 15806389 15806415 chr17,15806389,15806415,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,15806389,15806415 -6 + chr17 15806504 15806569 chr17,15806504,15806569,-,L2b,LINE,L2,-20,3355,3290,15806484,15809858 +6 - chr17 16023384 16023653 chr17,16023384,16023812,+,MER75,DNA,PiggyBac,72,509,-5,16023313,16023817 -1 + chr17 16040648 16040699 chr17,16040648,16040699,-,AluJb,SINE,Alu,-8,294,253,16040640,16040951 -6 - chr17 16040748 16040885 chr17,16040748,16040885,+,FLAM_A,SINE,Alu,1,129,-13,16040748,16040898 +6 + chr17 16040897 16041273 chr17,16040897,16041401,+,L3,LINE,CR1,389,961,-3138,16040509,16044539 +5 + chr17 16414524 16414805 chr17,16414502,16414805,-,AluSx1,SINE,Alu,-9,303,1,16414493,16414805 +5 - chr17 16414805 16414943 chr17,16414805,16414943,-,L2c,LINE,L2,-598,2821,2687,16414207,16417629 +6 - chr17 16428593 16428719 chr17,16428593,16428728,-,MIRc,SINE,MIR,-39,229,92,16428554,16428819 -5 - chr17 16440479 16440539 chr17,16440429,16440539,+,MIRb,SINE,MIR,72,193,-75,16440358,16440614 -5 + chr17 16440574 16440657 chr17,16440574,16440868,+,AluSx,SINE,Alu,1,298,-14,16440574,16440882 -2 + chr17 16440828 16440868 chr17,16440574,16440868,+,AluSx,SINE,Alu,1,298,-14,16440574,16440882 -4 + chr17 16441566 16441818 chr17,16441566,16441818,-,AluJb,SINE,Alu,-6,306,37,16441560,16441854 -5 - chr17 16463719 16463786 chr17,16463688,16463786,-,MIRc,SINE,MIR,-51,217,118,16463637,16463903 -2 - chr17 16478422 16478485 chr17,16478175,16478485,-,AluSx,SINE,Alu,0,312,1,16478175,16478485 -2 - chr17 16557985 16558044 chr17,16557573,16558044,+,L1MEd,LINE,L1,112,587,-6499,16557462,16564543 -5 + chr17 16558302 16558362 chr17,16558302,16558599,-,AluJb,SINE,Alu,-15,297,1,16558287,16558599 +2 - chr17 16558959 16558978 chr17,16558700,16558978,+,AluJo,SINE,Alu,3,284,-28,16558698,16559006 -4 + chr17 16558985 16559020 chr17,16558985,16559020,+,(AATAA)n,Simple_repeat,Simple_repeat,1,37,0,16558985,16559020 -6 + chr17 16559028 16559269 chr17,16559028,16559572,+,L1MC4,LINE,L1,6345,6620,-1422,16552684,16560994 -1 + chr17 16654561 16654593 chr17,16654561,16654593,+,(TGAA)n,Simple_repeat,Simple_repeat,1,34,0,16654561,16654593 +6 + chr17 16788290 16788306 chr17,16788290,16788425,+,AluSq2,SINE,Alu,157,291,-22,16788134,16788447 -2 + chr17 16788608 16788720 chr17,16788433,16788720,+,AluSp,SINE,Alu,1,286,-27,16788433,16788747 -4 + chr17 16788720 16788777 chr17,16788720,16788777,+,(AAAT)n,Simple_repeat,Simple_repeat,1,57,0,16788720,16788777 -6 + chr17 16800249 16800287 chr17,16800249,16800287,+,(TATGGCA)n,Simple_repeat,Simple_repeat,1,41,0,16800249,16800287 +6 + chr17 16804604 16804678 chr17,16804604,16804940,+,MER1B,DNA,hAT-Charlie,1,315,-24,16804604,16804964 +1 + chr17 16805616 16805707 chr17,16805616,16805830,-,MIRb,SINE,MIR,-12,256,34,16805604,16805863 -5 - chr17 16808843 16808949 chr17,16808711,16808949,+,L2a,LINE,L2,3127,3425,-1,16805585,16808950 +2 + chr17 16809879 16809938 chr17,16809855,16809938,-,MER103C,DNA,hAT-Charlie,-215,82,1,16809640,16809938 -2 - chr17 16816294 16816413 chr17,16816294,16816413,+,MIRb,SINE,MIR,7,146,-122,16816288,16816535 +6 + chr17 16816426 16816540 chr17,16816426,16816817,-,L2b,LINE,L2,-20,3355,2945,16816406,16819761 -5 - chr17 16976139 16976181 chr17,16976139,16976181,-,MIR,SINE,MIR,-39,223,176,16976100,16976356 +6 - chr17 16976715 16977315 chr17,16976715,16977315,-,L1MC5a,LINE,L1,-8,2769,2199,16976707,16979513 +6 - chr17 16977324 16977617 chr17,16977324,16977617,-,L1MC4,LINE,L1,-624,7418,7101,16976700,16984717 +6 - chr17 16980315 16980428 chr17,16980315,16980428,+,L2a,LINE,L2,3278,3426,0,16977038,16980428 -6 + chr17 16980441 16980716 chr17,16980441,16980743,+,AluSq2,SINE,Alu,1,303,-10,16980441,16980753 -2 + chr17 16981301 16981353 chr17,16980989,16981426,+,L2a,LINE,L2,2902,3373,-2,16978088,16981428 -1 + chr17 16990109 16990177 chr17,16990085,16990213,-,MER3,DNA,hAT-Charlie,-70,139,13,16990015,16990225 -5 - chr17 17011998 17012352 chr17,17011998,17012352,+,L1ME4a,LINE,L1,5536,5900,-224,17006463,17012576 -6 + chr17 17012505 17012623 chr17,17012505,17012623,-,L1MC4,LINE,L1,-4,8038,7933,17012501,17020555 +6 - chr17 17012624 17012929 chr17,17012624,17012929,-,AluSz,SINE,Alu,-1,311,6,17012623,17012934 +6 - chr17 17013272 17013349 chr17,17013272,17013349,+,(GCTCT)n,Simple_repeat,Simple_repeat,1,81,0,17013272,17013349 -6 + chr17 17013540 17013654 chr17,17013540,17013654,+,MIRb,SINE,MIR,42,159,-49,17013499,17013703 -6 + chr17 17013750 17013813 chr17,17013750,17013813,-,L2a,LINE,L2,-56,3370,3301,17013694,17017113 +6 - chr17 17014524 17014934 chr17,17014524,17014934,+,Arthur1,DNA,hAT-Tip100,31,537,-3410,17014494,17018344 -6 + chr17 17077056 17077157 chr17,17076929,17077157,-,AluJb,SINE,Alu,0,312,85,17076929,17077241 +4 - chr17 17182244 17182295 chr17,17182244,17182295,+,(TCTGT)n,Simple_repeat,Simple_repeat,1,55,0,17182244,17182295 +6 + chr17 17182311 17182427 chr17,17182311,17182427,-,L4_A_Mam,LINE,RTE-X,-256,4734,4614,17182055,17187040 -6 - chr17 17183218 17183257 chr17,17183218,17183515,-,AluY,SINE,Alu,-15,296,1,17183203,17183515 -5 - chr17 17235433 17235476 chr17,17235130,17235476,+,AluJb,SINE,Alu,2,309,-3,17235129,17235479 -5 + chr17 17507990 17508118 chr17,17507990,17508118,-,L2b,LINE,L2,-194,3193,3043,17507796,17511160 -6 - chr17 17610336 17610438 chr17,17610087,17610438,-,AluJo,SINE,Alu,-15,297,5,17610072,17610442 -2 - chr17 17616043 17616258 chr17,17615947,17616258,-,AluSp,SINE,Alu,-3,310,1,17615944,17616258 -1 - chr17 17616258 17616499 chr17,17616258,17616499,-,L1PB3,LINE,L1,-547,5607,5367,17615711,17621865 -6 - chr17 17616507 17617006 chr17,17616507,17617006,-,L1MC1,LINE,L1,-13,6320,5829,17616494,17622834 -6 - chr17 17617006 17617286 chr17,17617006,17617286,-,AluSx,SINE,Alu,-7,305,17,17616999,17617302 -6 - chr17 17617286 17617304 chr17,17617286,17617304,-,L1MC1,LINE,L1,-505,5828,5828,17616781,17623131 -6 - chr17 17617304 17617612 chr17,17617304,17617612,-,AluSp,SINE,Alu,-4,309,1,17617300,17617612 -6 - chr17 17617612 17617745 chr17,17617612,17617920,-,L1MC1,LINE,L1,-505,5828,5522,17617107,17623441 -5 - chr17 17674026 17674156 chr17,17673977,17674342,-,MSTD,LTR,ERVL-MaLR,0,396,35,17673977,17674376 +5 - chr17 17677575 17677641 chr17,17677568,17677641,+,MIR3,SINE,MIR,73,145,-63,17677496,17677704 -4 + chr17 17677660 17677688 chr17,17677660,17678025,+,MLT1D,LTR,ERVL-MaLR,82,445,-60,17677579,17678085 -1 + chr17 17765993 17766042 chr17,17765993,17766042,+,MIRc,SINE,MIR,31,73,-195,17765963,17766237 -6 + chr17 17776686 17776963 chr17,17776658,17776963,-,AluJo,SINE,Alu,0,312,1,17776658,17776963 +5 - chr17 17776963 17777302 chr17,17776963,17777302,-,L1ME4b,LINE,L1,-236,656,245,17776727,17777546 +6 - chr17 17777377 17777532 chr17,17777377,17777532,+,MIR,SINE,MIR,50,231,-31,17777328,17777563 -6 + chr17 17777656 17777680 chr17,17777656,17777680,+,(GGGAA)n,Simple_repeat,Simple_repeat,1,26,0,17777656,17777680 -6 + chr17 17777781 17777803 chr17,17777712,17777803,-,MIR3,SINE,MIR,-42,166,81,17777670,17777883 -1 - chr17 17777712 17777803 chr17,17777712,17777803,-,MIR3,SINE,MIR,-42,166,81,17777670,17777883 +1 - chr17 17778046 17778178 chr17,17778046,17778178,+,MER5A1,DNA,hAT-Charlie,16,166,0,17778031,17778178 -6 + chr17 17778361 17778582 chr17,17778361,17778582,-,MIRb,SINE,MIR,-9,259,22,17778352,17778603 +6 - chr17 17779217 17779237 chr17,17779217,17779237,+,(TGGC)n,Simple_repeat,Simple_repeat,1,21,0,17779217,17779237 -6 + chr17 17858298 17858412 chr17,17858298,17858412,+,SVA_B,Retroposon,SVA,191,302,-1081,17858108,17859493 +6 + chr17 17858314 17858415 chr17,17858314,17858415,-,FLAM_A,SINE,Alu,-20,122,24,17858294,17858438 -6 - chr17 17858415 17858582 chr17,17858415,17858582,-,AluSg7,SINE,Alu,-11,298,136,17858404,17858717 -6 - chr17 17858582 17858880 chr17,17858582,17858880,-,AluSc5,SINE,Alu,-11,298,1,17858571,17858880 -6 - chr17 17858880 17858998 chr17,17858880,17858998,-,AluSg7,SINE,Alu,-174,135,1,17858706,17858998 -6 - chr17 17858998 17859064 chr17,17858998,17859064,-,AluJb,SINE,Alu,-100,212,96,17858898,17859159 -6 - chr17 17859074 17859374 chr17,17859074,17859374,-,AluSp,SINE,Alu,-11,302,1,17859063,17859374 -6 - chr17 17859494 17859520 chr17,17859494,17859520,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,17859494,17859520 +6 + chr17 17859598 17859887 chr17,17859598,17859887,+,AluSx1,SINE,Alu,1,289,-23,17859598,17859910 +6 + chr17 18026698 18026771 chr17,18026698,18026856,-,MIR,SINE,MIR,-54,208,46,18026644,18026901 +1 - chr17 18108344 18108387 chr17,18108344,18108387,-,MIRb,SINE,MIR,-21,247,205,18108323,18108591 +6 - chr17 18110357 18110463 chr17,18110357,18110512,+,MIR,SINE,MIR,13,187,-75,18110345,18110587 -1 + chr17 18172625 18172745 chr17,18172549,18172925,-,MLT1B,LTR,ERVL-MaLR,-7,383,1,18172542,18172925 +5 - chr17 18176567 18176834 chr17,18176567,18176834,-,AluSz,SINE,Alu,-33,279,2,18176534,18176835 +6 - chr17 18176834 18176889 chr17,18176834,18176889,-,MSTB,LTR,ERVL-MaLR,-376,50,1,18176458,18176889 +6 - chr17 18176889 18177008 chr17,18176889,18177008,+,L2a,LINE,L2,3295,3423,-3,18173595,18177011 -6 + chr17 18177010 18177036 chr17,18177010,18177036,+,(TGGA)n,Simple_repeat,Simple_repeat,1,26,0,18177010,18177036 -6 + chr17 18177132 18177336 chr17,18177132,18177336,-,L2b,LINE,L2,0,3375,3122,18177132,18180457 +6 - chr17 18177355 18177469 chr17,18177355,18177469,+,MIRb,SINE,MIR,50,163,-105,18177306,18177574 -6 + chr17 18177633 18177817 chr17,18177633,18177817,+,MIR,SINE,MIR,43,243,-19,18177591,18177836 -6 + chr17 18178036 18178089 chr17,18178036,18178089,-,MIRb,SINE,MIR,-9,259,211,18178027,18178299 +6 - chr17 18178089 18178365 chr17,18178089,18178386,+,AluSc,SINE,Alu,1,297,-12,18178089,18178398 -2 + chr17 18325777 18326074 chr17,18325777,18326074,+,AluSq,SINE,Alu,1,295,-18,18325777,18326092 +5 + chr17 18327237 18327282 chr17,18327237,18327282,+,GA-rich,Low_complexity,Low_complexity,1,47,0,18327237,18327282 +6 + chr17 18379855 18380011 chr17,18379764,18380011,-,MIR,SINE,MIR,-1,261,9,18379763,18380019 +5 - chr17 18381220 18381252 chr17,18381220,18381252,+,G-rich,Low_complexity,Low_complexity,1,33,0,18381220,18381252 -6 + chr17 18381875 18382058 chr17,18381875,18382058,-,L2a,LINE,L2,-218,3157,2974,18381657,18385031 +6 - chr17 18383697 18383712 chr17,18383697,18383987,+,AluSz,SINE,Alu,8,297,-15,18383690,18384002 -2 + chr17 18387888 18388012 chr17,18387728,18388012,+,AluJr,SINE,Alu,2,282,-30,18387727,18388042 -4 + chr17 18388027 18388064 chr17,18388027,18388064,+,(AT)n,Simple_repeat,Simple_repeat,1,37,0,18388027,18388064 -6 + chr17 18388068 18388201 chr17,18388068,18388201,-,L1MEc,LINE,L1,-4255,2145,2005,18383813,18390205 +6 - chr17 18412271 18412297 chr17,18412271,18412297,+,(GCC)n,Simple_repeat,Simple_repeat,1,26,0,18412271,18412297 +6 + chr17 18412534 18412798 chr17,18412534,18412829,+,AluSg,SINE,Alu,1,296,-14,18412534,18412843 +4 + chr17 18414150 18414380 chr17,18413999,18414435,+,MLT1C,LTR,ERVL-MaLR,9,467,0,18413991,18414435 +5 + chr17 18424321 18424352 chr17,18424194,18424352,-,Plat_L3,LINE,CR1,-136,3450,3278,18424058,18427629 -1 - chr17 18512693 18512741 chr17,18512693,18512741,+,A-rich,Low_complexity,Low_complexity,1,48,0,18512693,18512741 -6 + chr17 18523843 18523966 chr17,18523843,18523966,+,MIRb,SINE,MIR,102,249,-19,18523742,18523985 -6 + chr17 18523999 18524031 chr17,18523999,18524031,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,18523999,18524031 -6 + chr17 18524122 18524400 chr17,18524122,18524417,+,AluSp,SINE,Alu,1,297,-16,18524122,18524433 -1 + chr17 18528712 18528767 chr17,18528712,18528767,+,AluYh3,SINE,Alu,2,56,-255,18528711,18529022 -6 + chr17 18528768 18529328 chr17,18528768,18529396,+,L1PREC2,LINE,L1,5000,5636,-529,18523769,18529925 -1 + chr17 18532506 18533034 chr17,18531706,18534404,+,L1PA11,LINE,L1,644,3399,-2932,18531063,18537336 -1 + chr17 18533347 18534062 chr17,18531706,18534404,+,L1PA11,LINE,L1,644,3399,-2932,18531063,18537336 -1 + chr17 18540927 18540998 chr17,18538875,18540998,+,L1PA11,LINE,L1,4231,6358,-1,18534645,18540999 -4 + chr17 18541017 18541446 chr17,18541017,18541446,+,L1MC4,LINE,L1,7417,7892,-150,18533601,18541596 -1 + chr17 18541519 18541548 chr17,18541519,18541548,+,(AATA)n,Simple_repeat,Simple_repeat,1,29,0,18541519,18541548 -6 + chr17 18542869 18542987 chr17,18542734,18543230,-,L2c,LINE,L2,0,3387,2850,18542734,18546079 +3 - chr17 18668286 18668315 chr17,18668286,18668315,+,A-rich,Low_complexity,Low_complexity,1,29,0,18668286,18668315 -6 + chr17 18809956 18810127 chr17,18809597,18810127,+,MER90a,LTR,ERV1,69,614,0,18809529,18810127 +1 + chr17 18810185 18810635 chr17,18810185,18810635,+,MER20B,DNA,hAT-Charlie,312,782,-1,18809874,18810636 +6 + chr17 18810682 18810829 chr17,18810682,18810829,-,L4_B_Mam,LINE,RTE-X,-714,4227,4097,18809968,18814925 -6 - chr17 18859430 18859561 chr17,18859430,18859561,+,MIR,SINE,MIR,52,194,-74,18859379,18859635 -6 + chr17 18859743 18859772 chr17,18859743,18860039,-,AluSx3,SINE,Alu,-8,303,5,18859735,18860043 +2 - chr17 18861423 18861466 chr17,18861182,18861493,+,AluSp,SINE,Alu,1,312,-1,18861182,18861494 -1 + chr17 18952442 18952523 chr17,18952442,18952575,+,MIR3,SINE,MIR,52,189,-79,18952391,18952654 -2 + chr17 18953626 18953668 chr17,18953626,18953668,+,(GTG)n,Simple_repeat,Simple_repeat,1,42,0,18953626,18953668 -6 + chr17 18953724 18953927 chr17,18953724,18953927,+,Tigger4a,DNA,TcMar-Tigger,31,236,0,18953694,18953927 -6 + chr17 18953954 18954149 chr17,18953954,18954150,+,MIRc,SINE,MIR,29,244,-24,18953926,18954174 -1 + chr17 19030857 19030974 chr17,19030676,19030974,+,L2a,LINE,L2,3054,3405,-21,19027623,19030995 +1 + chr17 19031590 19031798 chr17,19031590,19031798,-,MIR,SINE,MIR,0,230,5,19031590,19031802 -6 - chr17 19032151 19032303 chr17,19032151,19032303,+,L2c,LINE,L2,3002,3157,-230,19029150,19032533 +6 + chr17 19033004 19033109 chr17,19033004,19033109,-,MIRc,SINE,MIR,-73,157,58,19032931,19033166 -6 - chr17 19033198 19033529 chr17,19033198,19033577,+,MSTB,LTR,ERVL-MaLR,1,426,0,19033198,19033577 +5 + chr17 19061912 19062128 chr17,19061911,19062128,+,U3,snRNA,snRNA,1,217,0,19061911,19062128 +1 + chr17 19062419 19062494 chr17,19062419,19062562,-,AluSx,SINE,Alu,-39,273,137,19062380,19062698 -5 - chr17 19063449 19063619 chr17,19063348,19063619,+,AluSx,SINE,Alu,1,267,-45,19063348,19063664 -5 + chr17 19063919 19064136 chr17,19063919,19064136,-,U3,snRNA,snRNA,0,217,1,19063919,19064136 +1 - chr17 19079991 19080076 chr17,19079991,19080076,-,MIRc,SINE,MIR,-163,105,14,19079828,19080089 -6 - chr17 19080371 19080431 chr17,19080308,19080431,+,MLT1H2,LTR,ERVL-MaLR,62,187,-302,19080247,19080733 +2 + chr17 19080509 19080629 chr17,19080509,19080685,+,MLT1H2,LTR,ERVL-MaLR,406,627,0,19080104,19080685 +5 + chr17 19091069 19091092 chr17,19090667,19091092,+,LTR16C,LTR,ERVL,24,489,0,19090644,19091092 -5 + chr17 19091095 19091442 chr17,19091095,19091442,-,L2b,LINE,L2,0,3375,3019,19091095,19094460 +6 - chr17 19091707 19091825 chr17,19091707,19091868,-,MIR1_Amn,SINE,MIR,-12,218,49,19091695,19091916 +1 - chr17 19092974 19093178 chr17,19092937,19093178,+,MIR,SINE,MIR,20,262,0,19092918,19093178 +1 + chr17 19093217 19093306 chr17,19093217,19093348,-,MIRb,SINE,MIR,-35,173,37,19093182,19093384 -4 - chr17 19093657 19093768 chr17,19093657,19093768,+,MIR3,SINE,MIR,10,126,-82,19093648,19093850 +6 + chr17 19094151 19094307 chr17,19094151,19094476,-,L2a,LINE,L2,-1,3425,3050,19094150,19097525 -5 - chr17 19094917 19095090 chr17,19094916,19095090,-,AluJr,SINE,Alu,-10,302,132,19094906,19095221 -1 - chr17 19095090 19095120 chr17,19095090,19095120,+,(AAAC)n,Simple_repeat,Simple_repeat,1,31,0,19095090,19095120 +6 + chr17 19095120 19095241 chr17,19095120,19095241,-,AluJr,SINE,Alu,-181,131,5,19094939,19095245 -6 - chr17 19095262 19095699 chr17,19095262,19095699,-,L2b,LINE,L2,0,3375,2941,19095262,19098639 -6 - chr17 19095904 19095982 chr17,19095904,19095982,+,A-rich,Low_complexity,Low_complexity,1,79,0,19095904,19095982 +6 + chr17 19096423 19096555 chr17,19096423,19096555,-,MIRb,SINE,MIR,-128,140,11,19096295,19096565 -6 - chr17 19096696 19096750 chr17,19096696,19096750,+,(TCTTTT)n,Simple_repeat,Simple_repeat,1,56,0,19096696,19096750 +6 + chr17 19096752 19096837 chr17,19096752,19097091,-,AluJb,SINE,Alu,-1,311,1,19096751,19097091 -5 - chr17 19112000 19112129 chr17,19111855,19112129,+,AluSx,SINE,Alu,1,273,-39,19111855,19112168 -5 + chr17 19112419 19112636 chr17,19112419,19112636,-,U3,snRNA,snRNA,0,217,1,19112419,19112636 +1 - chr17 19141017 19141347 chr17,19140968,19141347,-,MSTB,LTR,ERVL-MaLR,0,426,1,19140968,19141347 +5 - chr17 19141436 19141541 chr17,19141436,19141541,+,MIRc,SINE,MIR,58,157,-73,19141379,19141614 -6 + chr17 19142242 19142394 chr17,19142242,19142394,-,L2c,LINE,L2,-230,3157,3002,19142012,19145395 +6 - chr17 19142747 19142955 chr17,19142747,19142955,+,MIR,SINE,MIR,5,230,0,19142743,19142955 -6 + chr17 19143571 19143689 chr17,19143571,19143869,-,L2a,LINE,L2,-21,3405,3054,19143550,19146922 +1 - chr17 19150385 19150397 chr17,19150385,19150652,-,AluSz,SINE,Alu,-45,267,1,19150340,19150652 -4 - chr17 19151215 19151286 chr17,19151073,19151308,+,AluSx,SINE,Alu,83,306,-6,19150991,19151314 +5 + chr17 19155727 19155739 chr17,19155532,19155739,+,MIRb,SINE,MIR,11,261,-7,19155522,19155746 -5 + chr17 19157781 19157936 chr17,19157611,19157936,+,L2a,LINE,L2,3050,3425,-1,19154562,19157937 -5 + chr17 19158319 19158430 chr17,19158319,19158430,-,MIR3,SINE,MIR,-82,126,10,19158237,19158439 +6 - chr17 19158779 19158867 chr17,19158736,19158867,+,MIRb,SINE,MIR,37,173,-35,19158700,19158902 -4 + chr17 19158906 19159111 chr17,19158906,19159147,-,MIR,SINE,MIR,0,262,20,19158906,19159166 +1 - chr17 19160789 19160989 chr17,19160642,19160989,+,L2b,LINE,L2,3019,3375,0,19157624,19160989 +1 + chr17 19160992 19161189 chr17,19160992,19161189,-,LTR16C,LTR,ERVL,0,489,273,19160992,19161461 -6 - chr17 19161294 19161417 chr17,19161294,19161417,-,LTR16C,LTR,ERVL,-356,133,24,19160938,19161440 -6 - chr17 19161425 19161644 chr17,19161425,19161644,+,MIRb,SINE,MIR,8,218,-12,19161418,19161656 +6 + chr17 19162008 19162096 chr17,19162008,19162096,+,MIR,SINE,MIR,52,151,-111,19161957,19162207 +6 + chr17 19162059 19162264 chr17,19162059,19162264,+,L2b,LINE,L2,3145,3375,0,19158915,19162264 +6 + chr17 19172002 19172087 chr17,19172002,19172087,+,MIRc,SINE,MIR,14,105,-163,19171989,19172250 -6 + chr17 19188016 19188232 chr17,19188015,19188232,+,U3,snRNA,snRNA,1,217,0,19188015,19188232 +1 + chr17 19188521 19188664 chr17,19188521,19188664,-,AluSx,SINE,Alu,-39,273,137,19188482,19188800 -6 - chr17 19188664 19188691 chr17,19188664,19188691,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,19188664,19188691 +6 + chr17 19188691 19188714 chr17,19188691,19188811,-,AluSx,SINE,Alu,-177,135,1,19188514,19188811 -5 - chr17 19189665 19189739 chr17,19189449,19189739,+,AluSx,SINE,Alu,1,273,-39,19189449,19189778 -5 + chr17 19190028 19190245 chr17,19190028,19190245,-,U3,snRNA,snRNA,0,217,1,19190028,19190245 +1 - chr17 19206173 19206258 chr17,19206173,19206258,-,MIRc,SINE,MIR,-163,105,14,19206010,19206271 -6 - chr17 19206553 19206613 chr17,19206490,19206613,+,MLT1H2,LTR,ERVL-MaLR,62,187,-302,19206429,19206915 +2 + chr17 19206691 19206811 chr17,19206691,19206867,+,MLT1H2,LTR,ERVL-MaLR,406,627,0,19206286,19206867 +5 + chr17 19296600 19296908 chr17,19296600,19296908,-,AluJr,SINE,Alu,-2,310,1,19296598,19296908 +6 - chr17 19296956 19297116 chr17,19296956,19297116,-,L1ME4c,LINE,L1,-167,663,497,19296789,19297612 +6 - chr17 19303824 19303938 chr17,19303824,19304123,+,AluSg,SINE,Alu,3,301,-9,19303822,19304132 -2 + chr17 19419035 19419080 chr17,19418945,19419080,+,MLT1J2,LTR,ERVL-MaLR,265,393,-55,19418681,19419135 +1 + chr17 19448157 19448300 chr17,19448076,19448300,-,MSTB1,LTR,ERVL-MaLR,-12,420,201,19448064,19448500 +5 - chr17 19448300 19448608 chr17,19448300,19448608,-,AluJr4,SINE,Alu,-12,300,1,19448288,19448608 +5 - chr17 19448608 19448641 chr17,19448608,19448768,-,MSTB1,LTR,ERVL-MaLR,-232,200,21,19448376,19448788 +2 - chr17 19449756 19449858 chr17,19449400,19449858,+,MLT1C,LTR,ERVL-MaLR,1,461,-6,19449400,19449864 -4 + chr17 19449900 19450013 chr17,19449900,19450013,+,L1M5,LINE,L1,5481,5596,-528,19444420,19450541 -6 + chr17 19450328 19450417 chr17,19450328,19450631,+,AluSg,SINE,Alu,1,309,-1,19450328,19450632 -1 + chr17 19452756 19452783 chr17,19452225,19452783,+,LSU-rRNA_Hsa,rRNA,rRNA,2257,2887,-2148,19449969,19454931 -4 + chr17 19452806 19453208 chr17,19452806,19453208,+,MSTB,LTR,ERVL-MaLR,3,426,0,19452804,19453208 -6 + chr17 19453359 19453421 chr17,19453359,19453434,+,LSU-rRNA_Hsa,rRNA,rRNA,3217,3293,-1742,19450143,19455176 -1 + chr17 19453623 19453660 chr17,19453623,19453784,+,LSU-rRNA_Hsa,rRNA,rRNA,4195,4365,-670,19449429,19454454 -2 + chr17 19455868 19456041 chr17,19455723,19456041,+,AluSx1,SINE,Alu,1,311,-1,19455723,19456042 -4 + chr17 19456041 19456307 chr17,19456041,19456638,-,LTR8A,LTR,ERV1,-123,604,1,19455918,19456638 +1 - chr17 19457080 19457317 chr17,19457012,19457398,-,MER4B,LTR,ERV1,-259,351,1,19456753,19457398 -1 - chr17 19458338 19458399 chr17,19458338,19458728,-,LTR7,LTR,ERV1,-7,443,1,19458331,19458728 -5 - chr17 19460797 19460900 chr17,19460797,19460900,+,MIRb,SINE,MIR,48,155,-113,19460750,19461013 -6 + chr17 19486846 19486974 chr17,19486817,19486974,-,HERV16-int,LTR,ERVL,-4828,168,9,19481989,19486982 +4 - chr17 19486982 19487065 chr17,19486982,19487144,-,LTR16A,LTR,ERVL,-1,450,276,19486981,19487419 +2 - chr17 19492852 19492960 chr17,19492643,19493225,+,L1M4,LINE,L1,4,617,-6900,19492640,19500125 -1 + chr17 19557297 19557559 chr17,19557297,19557559,-,L1ME4a,LINE,L1,-222,5902,5635,19557075,19563193 -6 - chr17 19557587 19557722 chr17,19557587,19557722,+,MIR1_Amn,SINE,MIR,70,204,-64,19557518,19557786 +6 + chr17 19557897 19557911 chr17,19557897,19557914,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,19557897,19557914 +5 + chr17 19564523 19564629 chr17,19564371,19564645,+,L1ME4b,LINE,L1,619,888,-4,19563753,19564649 -3 + chr17 19649373 19649469 chr17,19649312,19649469,-,L1M5,LINE,L1,-809,5385,5219,19648503,19654687 +5 - chr17 19649501 19649587 chr17,19649501,19649587,-,HY4,scRNA,scRNA,-9,84,1,19649492,19649587 +6 - chr17 19649703 19649866 chr17,19649703,19649866,-,MER5A1,DNA,hAT-Charlie,0,166,1,19649703,19649866 +6 - chr17 19649894 19649935 chr17,19649894,19650210,-,AluSz,SINE,Alu,0,312,1,19649894,19650210 +1 - chr17 19720218 19720424 chr17,19720218,19720424,-,MLT1H1,LTR,ERVL-MaLR,-294,301,40,19719924,19720463 -6 - chr17 19721304 19721332 chr17,19721304,19721332,+,(CTCTCC)n,Simple_repeat,Simple_repeat,1,59,-32,19721304,19721364 +6 + chr17 19721332 19721379 chr17,19721332,19721379,+,(CTCC)n,Simple_repeat,Simple_repeat,1,49,0,19721332,19721379 +6 + chr17 19721379 19721392 chr17,19721379,19721392,+,(CTCTCC)n,Simple_repeat,Simple_repeat,60,91,0,19721320,19721392 +6 + chr17 19721607 19722133 chr17,19721607,19722133,+,L1MC2,LINE,L1,5798,6343,-1,19715810,19722134 +6 + chr17 19722230 19722428 chr17,19722230,19722686,+,L1MB7,LINE,L1,5703,6140,-44,19716528,19722730 +5 + chr17 19855869 19856046 chr17,19855869,19856046,+,AluJo,SINE,Alu,138,303,-9,19855732,19856055 +6 + chr17 19856046 19856164 chr17,19856046,19856300,-,L1ME2,LINE,L1,-45,6119,5863,19856001,19862162 -5 - chr17 19896590 19897101 chr17,19896547,19897101,-,Kanga2_a,DNA,TcMar-Tc2,-93,795,178,19896454,19897278 +5 - chr17 19929372 19929637 chr17,19929343,19929637,+,L1ME3A,LINE,L1,5875,6170,-3,19923469,19929640 -5 + chr17 19929697 19929737 chr17,19929697,19930018,+,AluSg,SINE,Alu,2,310,0,19929696,19930018 -1 + chr17 20008051 20008086 chr17,20007892,20008086,+,L1M7,LINE,L1,3702,3886,-2328,20004191,20010414 -5 + chr17 20008303 20008497 chr17,20008303,20008497,-,MER20,DNA,hAT-Charlie,-29,190,2,20008274,20008498 +6 - chr17 20008914 20009102 chr17,20008914,20009102,-,MER5A,DNA,hAT-Charlie,-3,186,5,20008911,20009106 +6 - chr17 20185163 20185186 chr17,20185163,20185494,+,MLT1G,LTR,ERVL-MaLR,5,343,-252,20185159,20185746 +4 + chr17 20322884 20322973 chr17,20322695,20322999,+,AluY,SINE,Alu,1,301,-10,20322695,20323009 +5 + chr17 20323058 20323109 chr17,20322999,20323109,+,U6,snRNA,snRNA,4,106,-1,20322996,20323110 +1 + chr17 20433206 20433257 chr17,20433183,20433519,+,MER1B,DNA,hAT-Charlie,1,315,-24,20433183,20433543 +1 + chr17 20434195 20434285 chr17,20434195,20434409,-,MIRb,SINE,MIR,-12,256,34,20434183,20434442 -5 - chr17 20507413 20507524 chr17,20506549,20507524,-,LTR5_Hs,LTR,ERVK,0,968,1,20506549,20507524 +5 - chr17 20508899 20508931 chr17,20508899,20509023,+,MIRb,SINE,MIR,95,223,-45,20508805,20509068 -1 + chr17 20530042 20530430 chr17,20529994,20530430,-,MLT1C,LTR,ERVL-MaLR,0,467,9,20529994,20530438 +5 - chr17 20530856 20530881 chr17,20530856,20531145,+,AluY,SINE,Alu,17,306,-5,20530840,20531150 -1 + chr17 20546757 20547423 chr17,20546757,20547423,-,L1MC3,LINE,L1,-1629,6156,5479,20545128,20552901 -6 - chr17 20547968 20547990 chr17,20547968,20547990,+,(GGAA)n,Simple_repeat,Simple_repeat,1,22,0,20547968,20547990 +6 + chr17 20576667 20576882 chr17,20576652,20576882,-,L1ME4a,LINE,L1,-2932,3214,3000,20573720,20579881 +5 - chr17 20578627 20578656 chr17,20578510,20578656,-,L1ME4a,LINE,L1,-2023,4123,3974,20576487,20582629 +4 - chr17 20578679 20578748 chr17,20578679,20578995,-,AluJr,SINE,Alu,-1,311,3,20578678,20578997 +1 - chr17 20789059 20789209 chr17,20789059,20789209,+,MIR,SINE,MIR,33,182,-80,20789027,20789289 +6 + chr17 20855946 20856232 chr17,20855925,20856232,-,AluJr4,SINE,Alu,-10,302,1,20855915,20856232 -1 - chr17 20856697 20856798 chr17,20856697,20856798,-,MLT1F2,LTR,ERVL-MaLR,-52,508,405,20856645,20857202 -6 - chr17 20856929 20857102 chr17,20856929,20857102,-,MLT1F,LTR,ERVL-MaLR,-361,187,22,20856568,20857123 -6 - chr17 20857207 20857246 chr17,20857207,20857246,+,(TAATAC)n,Simple_repeat,Simple_repeat,1,41,0,20857207,20857246 +6 + chr17 20868433 20868685 chr17,20867311,20869903,-,REP522,Satellite,telo,-106,2477,1,20867205,20869903 -1 - chr17 20892230 20892252 chr17,20892143,20892252,+,Zaphod2,DNA,hAT-Tip100,410,518,-3006,20891734,20895258 +2 + chr17 20892252 20892432 chr17,20892252,20892688,+,Tigger2a,DNA,TcMar-Tigger,2,434,0,20892251,20892688 +4 + chr17 20902859 20903148 chr17,20902859,20903148,-,L1MA8,LINE,L1,-4,6287,5947,20902855,20909094 -6 - chr17 20903156 20903279 chr17,20903156,20903279,+,AluSx3,SINE,Alu,183,309,-2,20902974,20903281 +6 + chr17 20903316 20903880 chr17,20903316,20903880,+,L2a,LINE,L2,1946,2587,-832,20901371,20904712 +6 + chr17 20903908 20903943 chr17,20903908,20903943,+,(CA)n,Simple_repeat,Simple_repeat,1,35,0,20903908,20903943 +6 + chr17 20904178 20904267 chr17,20904178,20904267,+,L2a,LINE,L2,2748,2830,-589,20901431,20904856 +6 + chr17 20904267 20904558 chr17,20904267,20904558,-,AluSp,SINE,Alu,-20,293,1,20904247,20904558 -6 - chr17 20904592 20904727 chr17,20904592,20904727,+,L2a,LINE,L2,3289,3426,0,20901304,20904727 +6 + chr17 20904800 20904841 chr17,20904800,20904841,+,(GATTT)n,Simple_repeat,Simple_repeat,1,41,0,20904800,20904841 +6 + chr17 20921141 20921169 chr17,20921141,20921529,+,MLT1-int,LTR,ERVL-MaLR,170,554,-817,20920972,20922346 +1 + chr17 20929845 20930046 chr17,20929845,20930143,-,MER44A,DNA,TcMar-Tigger,-1,338,1,20929844,20930143 -5 - chr17 20932714 20932818 chr17,20932696,20932905,-,AluSz,SINE,Alu,-16,296,116,20932680,20933020 -5 - chr17 20938334 20938489 chr17,20938334,20938489,+,REP522,Satellite,telo,772,937,-880,20937563,20939369 +6 + chr17 20939084 20939519 chr17,20939084,20939701,-,L1M5,LINE,L1,-1763,4383,3724,20937321,20943424 -5 - chr17 20956199 20956298 chr17,20956199,20956298,-,LTR67B,LTR,ERVL,-445,175,70,20955754,20956367 -1 - chr17 20958411 20958471 chr17,20958411,20958471,-,L1ME3G,LINE,L1,-130,794,735,20958281,20959205 -6 - chr17 20958558 20958693 chr17,20958558,20958693,+,L2a,LINE,L2,3300,3425,-1,20955259,20958694 +6 + chr17 20979684 20979762 chr17,20978840,20979762,-,HAL1,LINE,L1,-1274,1233,259,20977566,20980020 -5 - chr17 20980005 20980238 chr17,20980005,20980292,-,AluJr,SINE,Alu,-10,302,1,20979995,20980292 -5 - chr17 20981748 20981972 chr17,20981748,20981972,+,L2b,LINE,L2,2943,3187,-188,20978806,20982160 +6 + chr17 20981987 20982292 chr17,20981987,20982292,-,L1MC5a,LINE,L1,-1,2776,2431,20981986,20984722 -6 - chr17 20982296 20982357 chr17,20982296,20982497,+,L2b,LINE,L2,3192,3416,-10,20979105,20982507 +5 + chr17 20994090 20994126 chr17,20993907,20994126,-,MLT1H2,LTR,ERVL-MaLR,-38,451,252,20993869,20994377 -2 - chr17 21075733 21075870 chr17,21075733,21075870,-,L2a,LINE,L2,-290,3136,2993,21075443,21078862 -6 - chr17 21090268 21090484 chr17,21089976,21090484,+,ERVL-E-int,LTR,ERVL,5059,5599,-68,21084918,21090552 +2 + chr17 21218089 21218135 chr17,21218061,21218135,-,LTR33B,LTR,ERVL,-61,459,383,21218000,21218517 -2 - chr17 21218253 21218428 chr17,21218253,21218428,-,LTR33B,LTR,ERVL,-286,234,42,21217967,21218469 -6 - chr17 21218466 21218497 chr17,21218466,21218497,+,MIRb,SINE,MIR,162,192,-76,21218305,21218573 +6 + chr17 21218650 21219120 chr17,21218650,21219282,-,L1ME4b,LINE,L1,-11,881,186,21218639,21219467 -5 - chr17 21229773 21229801 chr17,21229745,21229801,-,AluSz6,SINE,Alu,-10,302,247,21229735,21230047 -2 - chr17 21456523 21456980 chr17,21456523,21456980,+,L1PA6,LINE,L1,5692,6149,-5,21450832,21456985 -6 + chr17 21457070 21457152 chr17,21457070,21457152,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,82,0,21457070,21457152 -6 + chr17 21458537 21458585 chr17,21458537,21458585,+,(TGGAGG)n,Simple_repeat,Simple_repeat,1,50,0,21458537,21458585 -6 + chr17 21519514 21519558 chr17,21519390,21519558,-,L3,LINE,CR1,-5,4094,3890,21519385,21523447 -1 - chr17 21519580 21519704 chr17,21519580,21519784,-,L4_B_Mam,LINE,RTE-X,-1042,3899,3708,21518538,21523491 -4 - chr17 21532558 21532610 chr17,21532558,21532610,+,L2a,LINE,L2,3369,3421,-5,21529190,21532615 -6 + chr17 21533378 21533603 chr17,21533378,21533603,+,MER83B,LTR,ERV1,153,378,0,21533226,21533603 -6 + chr17 21541985 21542296 chr17,21541832,21542296,+,MLT1H,LTR,ERVL-MaLR,32,549,0,21541801,21542296 +2 + chr17 21573226 21573257 chr17,21572874,21573257,-,SST1,Satellite,centr,-1171,392,1,21571703,21573257 +4 - chr17 21574240 21574517 chr17,21574101,21574670,-,SST1,Satellite,centr,-18,1545,976,21574083,21575645 +1 - chr17 22234328 22234613 chr17,22232052,22239399,-,ALR/Alpha,Satellite,centr,-29,7368,1,22232023,22239399 +5 - chr17 22240992 22241162 chr17,22240003,22246155,-,ALR/Alpha,Satellite,centr,-50,6193,1,22239953,22246155 +5 - chr17 22241266 22241505 chr17,22240003,22246155,-,ALR/Alpha,Satellite,centr,-50,6193,1,22239953,22246155 +5 - chr17 22244559 22244733 chr17,22240003,22246155,-,ALR/Alpha,Satellite,centr,-50,6193,1,22239953,22246155 +5 - chr17 22245057 22245399 chr17,22240003,22246155,-,ALR/Alpha,Satellite,centr,-50,6193,1,22239953,22246155 +5 - chr17 22245826 22245930 chr17,22240003,22246155,-,ALR/Alpha,Satellite,centr,-50,6193,1,22239953,22246155 +5 - chr17 22254346 22254489 chr17,22254144,22265162,-,ALR/Alpha,Satellite,centr,-12,11089,1,22254132,22265162 +3 - chr17 22285005 22285128 chr17,22284974,22285285,-,AluSz6,SINE,Alu,-1,311,1,22284973,22285285 -3 - chr17 22285672 22285697 chr17,22285672,22285697,+,(ATTA)n,Simple_repeat,Simple_repeat,1,25,0,22285672,22285697 +6 + chr17 22286287 22287016 chr17,22286287,22287016,+,MER52A,LTR,ERV1,7,778,-1345,22286281,22288361 +6 + chr17 22287133 22287827 chr17,22287133,22287827,-,L1MA8,LINE,L1,-1549,4594,3881,22285584,22291707 -5 - chr17 22287830 22288099 chr17,22287830,22288099,+,L1MA5,LINE,L1,5643,5911,-389,22282188,22288488 +6 + chr17 22288099 22288133 chr17,22288099,22288411,+,AluYk4,SINE,Alu,1,309,-2,22288099,22288413 +5 + chr17 22298691 22298968 chr17,22298537,22299100,+,SST1,Satellite,centr,976,1542,-21,22297562,22299121 +1 + chr17 22406019 22406169 chr17,22405991,22406309,+,SST1,Satellite,centr,1214,1550,-13,22404778,22406322 +1 + chr17 22410572 22411888 chr17,22410572,22411888,+,SST1,Satellite,centr,1,1372,-1331,22410572,22413219 +6 + chr17 22411937 22411962 chr17,22411937,22411962,+,(TG)n,Simple_repeat,Simple_repeat,1,25,0,22411937,22411962 +6 + chr17 22411969 22412012 chr17,22411969,22412012,+,(TC)n,Simple_repeat,Simple_repeat,1,44,0,22411969,22412012 +6 + chr17 22412740 22413130 chr17,22412740,22413130,+,SST1,Satellite,centr,1,392,-1171,22412740,22414301 +6 + chr17 22413144 22413350 chr17,22413144,22413350,+,MER4B-int,LTR,ERV1,3975,4186,-2572,22409170,22415922 +6 + chr17 22413354 22413511 chr17,22413354,22413511,+,MER4B-int,LTR,ERV1,4321,4481,-2277,22409034,22415788 +6 + chr17 22413501 22413744 chr17,22413501,22414044,+,MER4B-int,LTR,ERV1,5004,5543,-1215,22408498,22415259 +5 + chr17 22420185 22420631 chr17,22420185,22420631,+,LTR43,LTR,ERV1,120,572,0,22420066,22420631 +6 + chr17 22421696 22421844 chr17,22421696,22421844,-,L1ME1,LINE,L1,-89,6090,5949,22421607,22427792 -6 - chr17 22422704 22423286 chr17,22422704,22423286,+,L1ME3A,LINE,L1,5076,5661,-501,22417629,22423787 +6 + chr17 22423315 22423685 chr17,22423315,22423685,+,L1ME3A,LINE,L1,5741,6161,-12,22417575,22423697 +6 + chr17 22423799 22424471 chr17,22423799,22424471,+,L1MB3,LINE,L1,5296,5981,-202,22418504,22424673 +6 + chr17 22424718 22424731 chr17,22424718,22424988,-,L1MEc,LINE,L1,-1527,4794,4535,22423191,22429522 -5 - chr17 22435968 22436035 chr17,22435968,22436035,+,Charlie16a,DNA,hAT-Charlie,62,128,-214,22435907,22436249 +6 + chr17 22436163 22436242 chr17,22436163,22436242,-,MERX,DNA,TcMar-Tigger,-69,687,609,22436094,22436850 -6 - chr17 22436612 22436809 chr17,22436612,22436809,-,AluJr4,SINE,Alu,-105,207,10,22436507,22436818 -6 - chr17 22436930 22437036 chr17,22436930,22437036,+,Charlie16a,DNA,hAT-Charlie,162,269,-73,22436769,22437109 +6 + chr17 22437047 22437487 chr17,22437047,22437487,+,L2,LINE,L2,1746,2374,-1045,22435302,22438532 +6 + chr17 22437499 22437888 chr17,22437499,22437888,+,L2,LINE,L2,2560,2970,-449,22434940,22438337 +6 + chr17 22437990 22438362 chr17,22437990,22438362,+,L1MC,LINE,L1,2568,2946,-3200,22435423,22441562 +6 + chr17 22524658 22524736 chr17,22524658,22524736,+,tRNA-Leu-TTA(m),tRNA,tRNA,1,78,0,22524658,22524736 -6 + chr17 22676695 22676794 chr17,22672491,22680090,-,ALR/Alpha,Satellite,centr,-31,7617,1,22672460,22680090 +5 - chr17 26989291 26989402 chr17,26989291,26989402,+,MLT1E,LTR,ERVL-MaLR,8,151,-503,26989284,26989905 -6 + chr17 26989430 26989479 chr17,26989430,26989493,+,MLT1E,LTR,ERVL-MaLR,315,378,-275,26989116,26989768 -2 + chr17 27238307 27238423 chr17,27238307,27238592,+,AluJb,SINE,Alu,1,285,-27,27238307,27238619 -2 + chr17 27314653 27314965 chr17,27314653,27314965,-,AluSx3,SINE,Alu,0,311,1,27314653,27314965 -6 - chr17 27316264 27316422 chr17,27316131,27316422,-,AluSz6,SINE,Alu,-14,298,1,27316117,27316422 -1 - chr17 27333408 27333427 chr17,27333408,27333504,-,L1ME3G,LINE,L1,-811,113,18,27332597,27333521 -4 - chr17 27346928 27346976 chr17,27346715,27346976,-,Tigger15a,DNA,TcMar-Tigger,-445,270,1,27346270,27346976 -2 - chr17 27347011 27347062 chr17,27347011,27347296,+,AluJb,SINE,Alu,1,293,-19,27347011,27347315 +4 + chr17 27348345 27348357 chr17,27347737,27348357,+,L1M5,LINE,L1,4606,5277,-869,27343132,27349226 +2 + chr17 27348351 27348491 chr17,27348351,27348591,+,L1ME3Cz,LINE,L1,55,305,-692,27348297,27349283 +5 + chr17 27465398 27465513 chr17,27465398,27465513,+,AluJo,SINE,Alu,1,115,-197,27465398,27465710 +6 + chr17 27662407 27662543 chr17,27662407,27662543,+,MIRb,SINE,MIR,102,254,-14,27662306,27662557 -6 + chr17 27662930 27662947 chr17,27662930,27662947,+,(CAG)n,Simple_repeat,Simple_repeat,1,17,0,27662930,27662947 -6 + chr17 27662957 27663012 chr17,27662957,27663012,-,MIRb,SINE,MIR,-5,263,209,27662952,27663220 +6 - chr17 27663111 27663418 chr17,27663111,27663418,-,AluJo,SINE,Alu,-6,306,1,27663105,27663418 +6 - chr17 27874645 27874718 chr17,27874604,27874718,-,L2b,LINE,L2,-4,3371,3254,27874600,27877971 -1 - chr17 27879186 27879241 chr17,27879186,27879241,+,A-rich,Low_complexity,Low_complexity,1,55,0,27879186,27879241 +6 + chr17 27880425 27880538 chr17,27880425,27880538,-,MIRb,SINE,MIR,-22,246,121,27880403,27880658 -6 - chr17 27880554 27880603 chr17,27880554,27880603,-,MIRb,SINE,MIR,-199,69,21,27880355,27880623 -6 - chr17 27880866 27880927 chr17,27880866,27880927,-,L3,LINE,CR1,-3577,522,456,27877289,27881382 -6 - chr17 27880872 27880943 chr17,27880872,27880943,-,OldhAT1,DNA,hAT-Ac,-2192,656,589,27878680,27881531 -6 - chr17 27880958 27881237 chr17,27880958,27881265,+,AluSp,SINE,Alu,3,311,-2,27880956,27881267 +5 + chr17 27929548 27929584 chr17,27929544,27929584,+,(GTTG)n,Simple_repeat,Simple_repeat,1,40,0,27929544,27929584 -5 + chr17 27929653 27929755 chr17,27929653,27929755,+,MIR3,SINE,MIR,85,191,-17,27929569,27929772 -6 + chr17 27930438 27930475 chr17,27930438,27930578,-,MLT1N2,LTR,ERVL-MaLR,-2,560,422,27930436,27930999 +2 - chr17 27931537 27931693 chr17,27931335,27931772,+,MLT1C,LTR,ERVL-MaLR,1,467,0,27931335,27931772 -3 + chr17 27974088 27974223 chr17,27974005,27974427,-,MLT1A,LTR,ERVL-MaLR,0,374,1,27974005,27974427 +1 - chr17 28219285 28219312 chr17,28219005,28219312,+,AluSp,SINE,Alu,1,308,-5,28219005,28219317 +1 + chr17 28219416 28219910 chr17,28219416,28219910,-,Tigger13a,DNA,TcMar-Tigger,-55,716,147,28219361,28220056 -6 - chr17 28219934 28220002 chr17,28219934,28220002,+,MER58C,DNA,hAT-Charlie,1,84,-131,28219934,28220133 +6 + chr17 28232590 28235281 chr17,28231014,28238844,-,HERVE-int,LTR,ERV1,-1,7812,1,28231013,28238844 +1 - chr17 28247699 28247751 chr17,28247699,28247751,+,(GCCCCA)n,Simple_repeat,Simple_repeat,1,53,0,28247699,28247751 -6 + chr17 28263634 28264062 chr17,28263601,28264062,-,MER4A1,LTR,ERV1,0,472,1,28263601,28264062 +5 - chr17 28264070 28264797 chr17,28264070,28264797,-,MER4-int,LTR,ERV1,-2,6596,5831,28264068,28270627 +6 - chr17 28264937 28265032 chr17,28264937,28265032,+,MIR1_Amn,SINE,MIR,35,129,-101,28264903,28265133 +6 + chr17 28264937 28265032 chr17,28264937,28265032,+,MIR1_Amn,SINE,MIR,35,129,-101,28264903,28265133 -6 + chr17 28265581 28265942 chr17,28265581,28265942,+,HERV-Fc1_LTR1,LTR,ERV1,1,346,0,28265581,28265942 -6 + chr17 28266197 28266369 chr17,28266197,28266558,+,HERV-Fc1_LTR1,LTR,ERV1,1,346,0,28266197,28266558 -1 + chr17 28362379 28362425 chr17,28362379,28362512,+,AluSz,SINE,Alu,1,133,-179,28362379,28362691 -2 + chr17 28362564 28362815 chr17,28362517,28362815,+,AluJo,SINE,Alu,2,291,-21,28362516,28362836 -4 + chr17 28373472 28373562 chr17,28373472,28373586,+,MamRep564,Unknown,Unknown,73,188,-169,28373400,28373755 +5 + chr17 28373985 28374301 chr17,28373985,28374303,+,AluSx1,SINE,Alu,2,304,-8,28373984,28374311 -1 + chr17 28406516 28406560 chr17,28406429,28406560,-,MIR,SINE,MIR,-3,259,118,28406426,28406677 -2 - chr17 28406629 28406796 chr17,28406629,28406822,+,MIR,SINE,MIR,1,211,-51,28406629,28406873 +5 + chr17 28599569 28599766 chr17,28599569,28599766,-,MIR,SINE,MIR,-2,260,62,28599567,28599827 -6 - chr17 28602046 28602090 chr17,28602046,28602090,-,Alu,SINE,Alu,-8,293,255,28602038,28602344 +6 - chr17 28602090 28602262 chr17,28602090,28602262,-,AluSz,SINE,Alu,-142,170,1,28601948,28602262 +6 - chr17 28602262 28602284 chr17,28602262,28602506,-,AluJr4,SINE,Alu,-17,295,1,28602245,28602506 +1 - chr17 28606296 28606408 chr17,28606110,28606408,-,AluJr,SINE,Alu,-11,301,1,28606099,28606408 -2 - chr17 28606502 28606588 chr17,28606502,28606588,+,X6A_LINE,LINE,CR1,320,408,-672,28606183,28607260 +6 + chr17 28606804 28606910 chr17,28606804,28607133,+,AluSq2,SINE,Alu,1,305,-8,28606804,28607141 +5 + chr17 28607978 28608359 chr17,28607978,28608359,-,L4_A_Mam,LINE,RTE-X,-1,4989,4571,28607977,28612929 -6 - chr17 28608359 28608547 chr17,28608359,28608654,-,AluSx,SINE,Alu,-16,296,2,28608343,28608655 -4 - chr17 28609233 28609303 chr17,28609032,28609303,-,AluSz,SINE,Alu,0,312,38,28609032,28609340 -2 - chr17 28609667 28609730 chr17,28609667,28609765,+,AluSz6,SINE,Alu,213,309,-3,28609455,28609768 +5 + chr17 28635694 28635938 chr17,28635694,28635938,+,L2c,LINE,L2,3124,3368,-19,28632571,28635957 +6 + chr17 28670054 28670112 chr17,28669953,28670112,-,Charlie1b,DNA,hAT-Charlie,-248,275,114,28669705,28670225 +5 - chr17 28670170 28670303 chr17,28670170,28670303,+,MIRb,SINE,MIR,42,191,-77,28670129,28670380 -6 + chr17 28672645 28672713 chr17,28672401,28672713,-,AluSq,SINE,Alu,0,313,1,28672401,28672713 +4 - chr17 28672713 28672804 chr17,28672713,28672834,-,AluSc,SINE,Alu,-20,289,167,28672693,28673000 +1 - chr17 28722410 28722476 chr17,28722282,28722476,-,AluSc,SINE,Alu,-115,194,1,28722167,28722476 +4 - chr17 28727641 28727739 chr17,28727611,28727920,-,AluSx,SINE,Alu,-4,308,1,28727607,28727920 -5 - chr17 28732963 28732987 chr17,28732873,28733179,-,AluJb,SINE,Alu,-10,302,1,28732863,28733179 +5 - chr17 28742312 28742575 chr17,28742312,28742575,+,AluY,SINE,Alu,2,304,-7,28742311,28742582 -6 + chr17 28742643 28742765 chr17,28742643,28742779,+,FLAM_C,SINE,Alu,1,135,-8,28742643,28742787 -1 + chr17 28742910 28743102 chr17,28742790,28743102,+,AluSx1,SINE,Alu,1,312,0,28742790,28743102 -1 + chr17 28745569 28745599 chr17,28745550,28745618,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,68,0,28745550,28745618 -5 + chr17 28861072 28861218 chr17,28861063,28861218,-,FLAM_C,SINE,Alu,0,143,2,28861063,28861219 +5 - chr17 28861218 28861235 chr17,28861218,28861235,+,(TTTA)n,Simple_repeat,Simple_repeat,1,16,0,28861218,28861235 -6 + chr17 28861262 28861296 chr17,28861262,28861296,+,(CCCACC)n,Simple_repeat,Simple_repeat,1,34,0,28861262,28861296 -6 + chr17 28861664 28861694 chr17,28861664,28861694,+,(GGACA)n,Simple_repeat,Simple_repeat,1,30,0,28861664,28861694 -6 + chr17 28892469 28892574 chr17,28892356,28892638,-,AluYj4,SINE,Alu,-10,301,1,28892346,28892638 -1 - chr17 28892887 28892950 chr17,28892652,28892950,-,AluSx1,SINE,Alu,-14,298,1,28892638,28892950 -2 - chr17 28897933 28898078 chr17,28897933,28898078,+,MIRb,SINE,MIR,35,186,-82,28897899,28898160 +6 + chr17 28898119 28898180 chr17,28898119,28898180,+,MER5A,DNA,hAT-Charlie,66,130,-59,28898054,28898239 +6 + chr17 28898402 28898503 chr17,28898402,28898503,+,MIRc,SINE,MIR,4,105,-163,28898399,28898666 +6 + chr17 28899299 28899377 chr17,28899299,28899377,-,L2a,LINE,L2,-6,3420,3343,28899293,28902719 -6 - chr17 28927750 28927807 chr17,28927555,28927828,+,MLT1H1,LTR,ERVL-MaLR,1,292,-263,28927555,28928091 +1 + chr17 28944546 28944670 chr17,28944546,28944670,+,AluSx3,SINE,Alu,182,305,-6,28944365,28944676 +6 + chr17 28944709 28944749 chr17,28944709,28944750,+,A-rich,Low_complexity,Low_complexity,1,41,0,28944709,28944750 +5 + chr17 28944992 28945251 chr17,28944992,28945251,+,AluJr,SINE,Alu,1,299,-13,28944992,28945264 +6 + chr17 29015387 29015481 chr17,29015387,29015481,+,L2c,LINE,L2,3293,3385,-2,29012095,29015483 +6 + chr17 29015640 29015662 chr17,29015640,29015662,+,(CAG)n,Simple_repeat,Simple_repeat,1,22,0,29015640,29015662 +6 + chr17 29071505 29071594 chr17,29071505,29071713,+,L2b,LINE,L2,2999,3217,-170,29068507,29071883 -1 + chr17 29352069 29352107 chr17,29351945,29352265,-,AluSz,SINE,Alu,0,312,1,29351945,29352265 -1 - chr17 29403726 29403868 chr17,29403695,29403868,-,AluJb,SINE,Alu,-3,309,137,29403692,29404004 -2 - chr17 29560649 29560699 chr17,29560649,29560953,-,AluY,SINE,Alu,-7,304,1,29560642,29560953 -4 - chr17 29569690 29569821 chr17,29569690,29569821,+,MIRc,SINE,MIR,98,258,-10,29569593,29569831 +6 + chr17 29569917 29569962 chr17,29569917,29570205,-,AluSz,SINE,Alu,-12,300,1,29569905,29570205 -4 - chr17 29570438 29570519 chr17,29570225,29570519,+,AluSx,SINE,Alu,1,297,-15,29570225,29570534 +5 + chr17 29592195 29592241 chr17,29592176,29592337,-,MIRb,SINE,MIR,-73,195,22,29592103,29592358 +1 - chr17 29640719 29640825 chr17,29640719,29640937,-,L1ME3E,LINE,L1,-149,6093,5865,29640570,29646801 -5 - chr17 29644797 29644833 chr17,29644797,29644833,+,(ATAA)n,Simple_repeat,Simple_repeat,1,36,0,29644797,29644833 -6 + chr17 29644833 29644889 chr17,29644833,29644889,+,LTR33,LTR,ERVL,464,508,-7,29644370,29644896 -6 + chr17 29645115 29645342 chr17,29645115,29645342,-,MIRb,SINE,MIR,-15,253,3,29645100,29645344 +6 - chr17 29707057 29707090 chr17,29706871,29707168,+,AluYi6,SINE,Alu,1,297,-14,29706871,29707182 +5 + chr17 29780461 29780587 chr17,29780435,29780722,-,AluSg,SINE,Alu,-12,298,1,29780423,29780722 -3 - chr17 29787479 29787731 chr17,29786968,29787731,-,L1MB3,LINE,L1,-1,6182,5399,29786967,29793129 -2 - chr17 29787731 29787836 chr17,29787731,29788028,-,AluJo,SINE,Alu,-14,298,1,29787717,29788028 -5 - chr17 29863411 29863700 chr17,29863411,29863700,+,MLT1L,LTR,ERVL-MaLR,216,518,-92,29863196,29863792 +6 + chr17 29864022 29864240 chr17,29864022,29864337,+,AluSq2,SINE,Alu,1,313,0,29864022,29864337 +4 + chr17 29866039 29866092 chr17,29865818,29866131,+,AluSx1,SINE,Alu,1,311,-1,29865818,29866132 +5 + chr17 30059339 30059391 chr17,30059274,30059391,-,FLAM_A,SINE,Alu,-18,124,8,30059256,30059398 +5 - chr17 30059868 30059885 chr17,30059868,30059985,-,FLAM_A,SINE,Alu,-25,117,1,30059843,30059985 +2 - chr17 30065634 30065677 chr17,30065381,30065686,+,AluSc,SINE,Alu,1,305,-4,30065381,30065690 -1 + chr17 30122429 30122648 chr17,30122385,30122703,-,AluSx,SINE,Alu,0,312,1,30122385,30122703 +5 - chr17 30125793 30125847 chr17,30125555,30125847,-,AluSz6,SINE,Alu,-20,292,1,30125535,30125847 +4 - chr17 30144516 30144560 chr17,30144271,30144560,-,AluSx,SINE,Alu,-23,289,2,30144248,30144561 +4 - chr17 30144601 30144639 chr17,30144601,30144639,+,(TATGTG)n,Simple_repeat,Simple_repeat,1,38,0,30144601,30144639 -6 + chr17 30144741 30144790 chr17,30144741,30145300,-,L1ME5,LINE,L1,-7,6187,5600,30144734,30150899 +1 - chr17 30205991 30206107 chr17,30205962,30206107,-,AluSz,SINE,Alu,-166,146,2,30205796,30206108 -2 - chr17 30206234 30206273 chr17,30206234,30206273,+,(A)n,Simple_repeat,Simple_repeat,1,39,0,30206234,30206273 +6 + chr17 30252074 30252126 chr17,30251756,30252126,-,Charlie1a,DNA,hAT-Charlie,-1,1454,1054,30251755,30253179 -2 - chr17 30252138 30252199 chr17,30252138,30252199,-,Charlie1b,DNA,hAT-Charlie,-452,71,1,30251686,30252199 -6 - chr17 30551279 30551621 chr17,30551279,30551621,+,THE1D,LTR,ERVL-MaLR,7,381,0,30551273,30551621 +6 + chr17 30557732 30558006 chr17,30557326,30558006,+,L1MD3,LINE,L1,5479,6164,-1621,30551848,30559627 -5 + chr17 30564057 30564161 chr17,30563389,30564161,-,LTR5_Hs,LTR,ERVK,-193,775,2,30563196,30564162 +5 - chr17 30564327 30564416 chr17,30564327,30564416,-,MIRc,SINE,MIR,-149,119,25,30564178,30564440 +6 - chr17 30565094 30565136 chr17,30565094,30565136,+,(CCTCCTG)n,Simple_repeat,Simple_repeat,1,45,0,30565094,30565136 -6 + chr17 30565544 30565576 chr17,30565544,30565668,+,MIRb,SINE,MIR,95,223,-45,30565450,30565713 -1 + chr17 30574220 30574378 chr17,30574220,30574378,+,Plat_L3,LINE,CR1,3278,3450,-136,30570943,30574514 -1 + chr17 30576254 30576400 chr17,30576254,30576400,-,REP522,Satellite,telo,-861,956,798,30575393,30577197 +6 - chr17 30576703 30576734 chr17,30576703,30576734,+,GA-rich,Low_complexity,Low_complexity,1,31,0,30576703,30576734 +6 + chr17 30576703 30576734 chr17,30576703,30576734,+,GA-rich,Low_complexity,Low_complexity,1,31,0,30576703,30576734 -6 + chr17 30576914 30577096 chr17,30576914,30577096,-,L1M5,LINE,L1,-717,5406,5210,30576197,30582305 -1 - chr17 30576914 30577000 chr17,30576914,30577096,-,L1M5,LINE,L1,-717,5406,5210,30576197,30582305 +1 - chr17 30577109 30577208 chr17,30577109,30577208,-,L1M5,LINE,L1,-1778,4368,4269,30575331,30581476 -6 - chr17 30577240 30577303 chr17,30577240,30577303,+,(ATGTACTT)n,Simple_repeat,Simple_repeat,1,65,0,30577240,30577303 +6 + chr17 30578874 30579220 chr17,30578874,30579220,-,L1M5,LINE,L1,-1782,4364,3982,30577092,30583201 -6 - chr17 30579222 30579352 chr17,30579222,30579352,-,AluSq2,SINE,Alu,-18,295,166,30579204,30579517 -6 - chr17 30579541 30579664 chr17,30579541,30579664,+,AluJo,SINE,Alu,182,304,-8,30579360,30579672 +6 + chr17 30633346 30633380 chr17,30633346,30633380,+,(AGAAC)n,Simple_repeat,Simple_repeat,1,36,0,30633346,30633380 +6 + chr17 30635190 30635466 chr17,30635190,30635487,+,AluY,SINE,Alu,1,302,-9,30635190,30635496 +5 + chr17 30648367 30648456 chr17,30648320,30648663,-,L2a,LINE,L2,0,3426,3031,30648320,30651693 -3 - chr17 30672463 30672595 chr17,30672382,30672595,-,MER20,DNA,hAT-Charlie,0,219,1,30672382,30672595 -2 - chr17 30724982 30725181 chr17,30724873,30725181,-,AluYh3,SINE,Alu,-3,308,1,30724870,30725181 +1 - chr17 30726305 30726364 chr17,30726131,30726364,+,L1MA9,LINE,L1,6100,6312,0,30720032,30726364 -5 + chr17 30726385 30726548 chr17,30726385,30726548,+,L1MB7,LINE,L1,5735,5897,-287,30720651,30726835 -6 + chr17 30726548 30726663 chr17,30726548,30726833,+,AluJb,SINE,Alu,1,276,-36,30726548,30726869 -2 + chr17 30727464 30727564 chr17,30727430,30727570,-,L2,LINE,L2,-779,2640,2504,30726651,30730073 +1 - chr17 30729882 30730094 chr17,30729882,30730094,-,L2,LINE,L2,-660,2759,2542,30729222,30732635 -1 - chr17 30730094 30730152 chr17,30730094,30730152,-,L2a,LINE,L2,-4,3422,3357,30730090,30733508 -6 - chr17 30730182 30730227 chr17,30730182,30730457,+,AluJr,SINE,Alu,25,300,-12,30730158,30730469 +5 + chr17 30730362 30730391 chr17,30730182,30730457,+,AluJr,SINE,Alu,25,300,-12,30730158,30730469 +5 + chr17 30731098 30731202 chr17,30730918,30731226,+,AluSx3,SINE,Alu,1,307,-4,30730918,30731230 +5 + chr17 30738182 30738304 chr17,30737990,30738304,-,AluSq2,SINE,Alu,-1,312,1,30737989,30738304 -1 - chr17 30738915 30739325 chr17,30738915,30739325,-,MER58D,DNA,hAT-Charlie,-6,380,1,30738909,30739325 -6 - chr17 30739378 30739675 chr17,30739378,30739675,-,AluSg,SINE,Alu,-10,300,1,30739368,30739675 -6 - chr17 30739819 30740106 chr17,30739819,30740106,-,AluSp,SINE,Alu,-24,289,2,30739795,30740107 -6 - chr17 30781493 30781570 chr17,30781432,30781747,-,AluSq2,SINE,Alu,0,313,2,30781432,30781748 +5 - chr17 30781992 30782108 chr17,30781818,30782108,+,AluSz6,SINE,Alu,1,290,-22,30781818,30782130 -4 + chr17 30792372 30792406 chr17,30792223,30792406,-,MIRb,SINE,MIR,-52,216,7,30792171,30792412 -1 - chr17 30803654 30803871 chr17,30803511,30803871,+,THE1B,LTR,ERVL-MaLR,1,364,0,30803511,30803871 +1 + chr17 30862696 30862740 chr17,30862437,30862740,-,AluSp,SINE,Alu,-10,303,1,30862427,30862740 +4 - chr17 30862803 30862908 chr17,30862803,30862908,+,Tigger4b,DNA,TcMar-Tigger,1,105,-256,30862803,30863164 -6 + chr17 30862908 30863028 chr17,30862908,30863202,+,AluJo,SINE,Alu,1,297,-15,30862908,30863217 -1 + chr17 30863921 30863964 chr17,30863664,30863964,-,AluSz,SINE,Alu,-12,300,1,30863652,30863964 +5 - chr17 30863964 30864096 chr17,30863964,30864096,-,AluSx1,SINE,Alu,-176,136,5,30863788,30864100 +6 - chr17 30864096 30864130 chr17,30864096,30864130,+,Tigger4b,DNA,TcMar-Tigger,133,167,-194,30863964,30864324 -2 + chr17 30864320 30864344 chr17,30864160,30864344,+,AluJr,SINE,Alu,121,297,-15,30864040,30864359 -4 + chr17 30864347 30864530 chr17,30864347,30864530,-,L1PA17,LINE,L1,-10,6156,5983,30864337,30870512 +6 - chr17 30864530 30864663 chr17,30864530,30864663,-,FLAM_C,SINE,Alu,-10,133,1,30864520,30864663 +6 - chr17 30864663 30864918 chr17,30864663,30864918,-,L1PA17,LINE,L1,-184,5982,5731,30864479,30870648 +6 - chr17 30864918 30864940 chr17,30864918,30865020,-,AluSx3,SINE,Alu,-10,301,200,30864908,30865219 +1 - chr17 30964935 30964982 chr17,30964678,30964982,-,AluSx,SINE,Alu,-6,306,2,30964672,30964983 +5 - chr17 30965068 30965156 chr17,30965068,30965363,+,AluJb,SINE,Alu,1,309,-3,30965068,30965366 -2 + chr17 30965314 30965363 chr17,30965068,30965363,+,AluJb,SINE,Alu,1,309,-3,30965068,30965366 -4 + chr17 30965370 30965408 chr17,30965370,30965408,+,(ATGT)n,Simple_repeat,Simple_repeat,1,38,0,30965370,30965408 -6 + chr17 30965408 30965500 chr17,30965408,30965604,+,Charlie2a,DNA,hAT-Charlie,1645,1844,-1017,30963764,30966621 -1 + chr17 30971740 30971784 chr17,30971740,30971784,-,L1MB4,LINE,L1,-6,7593,7560,30971734,30979343 -6 - chr17 30971784 30972091 chr17,30971784,30972091,-,AluSx,SINE,Alu,-13,299,1,30971771,30972091 -6 - chr17 30972091 30972102 chr17,30972091,30972102,-,L1MB4,LINE,L1,-40,7559,7559,30972051,30979660 -6 - chr17 30972102 30972412 chr17,30972102,30972412,-,AluY,SINE,Alu,-18,293,1,30972084,30972412 -6 - chr17 30972412 30972772 chr17,30972412,30972772,-,L1MB4,LINE,L1,-40,7559,7195,30972372,30979966 -6 - chr17 30972772 30973073 chr17,30972772,30973073,-,AluSc,SINE,Alu,-8,301,1,30972764,30973073 -6 - chr17 30973073 30973312 chr17,30973073,30973472,-,L1MB4,LINE,L1,-734,6859,6465,30972339,30979936 -5 - chr17 30978610 30979204 chr17,30978606,30980208,-,SVA_E,Retroposon,SVA,0,1382,422,30978606,30980629 +5 - chr17 30980178 30980208 chr17,30978606,30980208,-,SVA_E,Retroposon,SVA,0,1382,422,30978606,30980629 +5 - chr17 30980225 30980250 chr17,30980225,30981349,-,SVA_E,Retroposon,SVA,-520,862,57,30979705,30981405 +1 - chr17 31090787 31090935 chr17,31090768,31091074,-,AluJb,SINE,Alu,-16,296,2,31090752,31091075 +5 - chr17 31093373 31093491 chr17,31093211,31093505,+,AluJr,SINE,Alu,7,295,-17,31093205,31093522 -3 + chr17 31133182 31133648 chr17,31132977,31133648,-,L1MB2,LINE,L1,-4,6167,5493,31132973,31139140 -1 - chr17 31133648 31133701 chr17,31133648,31133956,-,AluSx1,SINE,Alu,-4,308,1,31133644,31133956 -4 - chr17 31136259 31136358 chr17,31136048,31136358,+,AluY,SINE,Alu,1,311,0,31136048,31136358 +2 + chr17 31136387 31136926 chr17,31136387,31136926,+,MER44B,DNA,TcMar-Tigger,10,550,0,31136378,31136926 +6 + chr17 31136926 31137316 chr17,31136926,31137316,-,L1ME3D,LINE,L1,-5539,1564,1149,31131387,31138464 -6 - chr17 31137311 31138032 chr17,31137311,31138032,-,HAL1,LINE,L1,-375,2132,1388,31136936,31139419 -6 - chr17 31138112 31138142 chr17,31138112,31138142,+,(TATT)n,Simple_repeat,Simple_repeat,1,30,0,31138112,31138142 +6 + chr17 31138179 31138216 chr17,31138179,31138216,+,(TTTC)n,Simple_repeat,Simple_repeat,1,37,0,31138179,31138216 +6 + chr17 31138255 31138518 chr17,31138255,31138563,-,AluSx1,SINE,Alu,-4,308,1,31138251,31138563 -5 - chr17 31583162 31583189 chr17,31582888,31583189,+,AluY,SINE,Alu,1,306,-5,31582888,31583194 +1 + chr17 31583189 31583272 chr17,31583189,31583300,+,MLT1K,LTR,ERVL-MaLR,425,538,-57,31582765,31583357 +4 + chr17 31590532 31590646 chr17,31590516,31590646,-,AluY,SINE,Alu,-180,131,2,31590336,31590647 -2 - chr17 31637385 31637543 chr17,31634265,31638526,+,HERVK9-int,LTR,ERVK,1637,6021,0,31632629,31638526 +5 + chr17 31762440 31762862 chr17,31762038,31762862,+,LTR12,LTR,ERV1,1,826,0,31762038,31762862 +1 + chr17 31762862 31762902 chr17,31762862,31771334,+,HERV9-int,LTR,ERV1,1,8436,0,31762862,31771334 +5 + chr17 31769007 31769048 chr17,31762862,31771334,+,HERV9-int,LTR,ERV1,1,8436,0,31762862,31771334 +5 + chr17 31830736 31830790 chr17,31830736,31830918,-,MIRb,SINE,MIR,-81,181,2,31830655,31830919 -4 - chr17 31831439 31831733 chr17,31831439,31831733,-,L2a,LINE,L2,-297,3129,2811,31831142,31834543 -6 - chr17 31831733 31831750 chr17,31831733,31831776,+,L1ME3Cz,LINE,L1,263,307,-690,31831471,31832466 +5 + chr17 31874269 31874318 chr17,31874269,31874560,+,AluSx1,SINE,Alu,6,297,-15,31874264,31874575 +4 + chr17 31886572 31886666 chr17,31886381,31886673,+,AluSq2,SINE,Alu,1,291,-22,31886381,31886695 +5 + chr17 32051199 32051510 chr17,32051199,32051510,+,AluY,SINE,Alu,1,311,0,32051199,32051510 +6 + chr17 32051595 32051705 chr17,32051595,32051705,+,AluJb,SINE,Alu,178,287,-25,32051418,32051730 +6 + chr17 32051711 32052183 chr17,32051711,32052183,-,L1M5,LINE,L1,-1522,4624,4159,32050189,32056341 -6 - chr17 32052184 32052393 chr17,32052184,32052393,-,AluJr4,SINE,Alu,-5,307,82,32052179,32052474 -6 - chr17 32052619 32052695 chr17,32052619,32052695,+,MER2,DNA,TcMar-Tigger,135,213,-132,32052485,32052827 +6 + chr17 32052695 32052964 chr17,32052695,32052964,+,AluJr,SINE,Alu,1,302,-10,32052695,32052974 +6 + chr17 32052964 32053100 chr17,32052964,32053100,+,MER2,DNA,TcMar-Tigger,214,345,0,32052751,32053100 +6 + chr17 32127848 32128120 chr17,32127848,32128120,-,L1MD,LINE,L1,-1661,4485,4212,32126187,32132331 -6 - chr17 32128199 32128244 chr17,32128199,32128244,-,AluYk11,SINE,Alu,-267,44,1,32127932,32128244 -6 - chr17 32141256 32141504 chr17,32141256,32141504,-,MIR,SINE,MIR,0,262,13,32141256,32141516 +6 - chr17 32142118 32142182 chr17,32142118,32142182,-,L2b,LINE,L2,-62,3313,3249,32142056,32145430 +6 - chr17 32142186 32142283 chr17,32142186,32142283,+,MIR3,SINE,MIR,60,164,-44,32142127,32142327 -6 + chr17 32142451 32142501 chr17,32142451,32142501,+,(CCG)n,Simple_repeat,Simple_repeat,1,50,0,32142451,32142501 -6 + chr17 32159311 32160371 chr17,32158872,32160983,+,MER52D,LTR,ERV1,7,2123,0,32158866,32160983 +5 + chr17 32178946 32179164 chr17,32178199,32179164,+,SVA_A,Retroposon,SVA,41,872,-515,32178159,32179679 -5 + chr17 32179165 32180074 chr17,32179165,32180647,+,SVA_A,Retroposon,SVA,422,1384,-3,32178744,32180650 -1 + chr17 32328608 32328659 chr17,32328608,32328918,+,AluSc8,SINE,Alu,1,310,-1,32328608,32328919 +4 + chr17 32329344 32329365 chr17,32329069,32329365,-,AluY,SINE,Alu,-15,296,1,32329054,32329365 -2 - chr17 32360620 32360649 chr17,32360620,32360649,+,(GAT)n,Simple_repeat,Simple_repeat,1,29,0,32360620,32360649 +6 + chr17 32408013 32408160 chr17,32407870,32408160,+,AluJb,SINE,Alu,5,302,-10,32407866,32408170 +1 + chr17 32410159 32410306 chr17,32409909,32410306,-,L1PA4,LINE,L1,-3,6152,5759,32409906,32416064 -1 - chr17 32411427 32411549 chr17,32411427,32411549,+,FLAM_C,SINE,Alu,1,121,-22,32411427,32411571 +6 + chr17 32411616 32411678 chr17,32411616,32411933,-,AluSz,SINE,Alu,-1,311,1,32411615,32411933 -4 - chr17 32412331 32412420 chr17,32412105,32412442,+,AluSq2,SINE,Alu,1,307,-6,32412105,32412448 +5 + chr17 32423971 32424000 chr17,32423788,32424000,+,AluY,SINE,Alu,1,210,-101,32423788,32424101 -5 + chr17 32424000 32424029 chr17,32424000,32424029,+,L1MEd,LINE,L1,3103,3125,-3021,32420898,32427050 -6 + chr17 32424029 32424313 chr17,32424029,32424329,+,AluJo,SINE,Alu,2,295,-17,32424028,32424346 -2 + chr17 32426758 32426878 chr17,32426713,32426878,-,AluSp,SINE,Alu,-1,312,154,32426712,32427031 +5 - chr17 32430967 32431049 chr17,32430770,32431071,-,AluSx1,SINE,Alu,-10,302,1,32430760,32431071 -1 - chr17 32432362 32432383 chr17,32432080,32432383,-,AluSc,SINE,Alu,-7,302,1,32432073,32432383 -2 - chr17 32432383 32432413 chr17,32432383,32432413,+,(TA)n,Simple_repeat,Simple_repeat,1,33,0,32432383,32432413 +6 + chr17 32432424 32432610 chr17,32432424,32432610,-,AluSx1,SINE,Alu,-126,186,1,32432298,32432610 -6 - chr17 32432611 32432809 chr17,32432611,32432809,-,MSTA,LTR,ERVL-MaLR,-227,201,1,32432384,32432809 -6 - chr17 32436242 32436405 chr17,32436231,32436614,+,L1MEi,LINE,L1,1098,1573,-639,32435134,32437253 -3 + chr17 32438479 32438760 chr17,32438479,32438785,+,AluSp,SINE,Alu,1,308,-5,32438479,32438790 -1 + chr17 32443559 32443719 chr17,32443559,32443719,-,L3,LINE,CR1,-155,3944,3775,32443404,32447493 +6 - chr17 32443768 32443810 chr17,32443768,32443810,+,(TTCC)n,Simple_repeat,Simple_repeat,1,42,0,32443768,32443810 -6 + chr17 32443808 32443827 chr17,32443808,32443827,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,32443808,32443827 -6 + chr17 32444480 32444545 chr17,32444480,32444545,+,(CGG)n,Simple_repeat,Simple_repeat,1,65,0,32444480,32444545 -6 + chr17 32498350 32498466 chr17,32498350,32498466,+,MIRb,SINE,MIR,12,126,-104,32498339,32498570 +6 + chr17 32498922 32499208 chr17,32498922,32499208,+,AluSx1,SINE,Alu,1,302,-10,32498922,32499218 +6 + chr17 32499220 32499333 chr17,32499220,32499350,+,FLAM_A,SINE,Alu,1,133,-9,32499220,32499359 +5 + chr17 32509970 32510165 chr17,32509970,32510165,-,MIR,SINE,MIR,-13,249,35,32509957,32510199 +6 - chr17 32518322 32518466 chr17,32518192,32518466,-,L2c,LINE,L2,-1,3386,3130,32518191,32521595 +5 - chr17 32518479 32518607 chr17,32518479,32518607,-,L1ME4b,LINE,L1,-10,882,757,32518469,32519363 +6 - chr17 32523397 32523424 chr17,32523305,32523430,-,MIR3,SINE,MIR,-49,159,20,32523256,32523449 +1 - chr17 32531229 32531351 chr17,32530997,32531351,+,MLT1K,LTR,ERVL-MaLR,72,434,-161,32530926,32531512 +2 + chr17 32632400 32632469 chr17,32632259,32632469,+,MER102b,DNA,hAT-Charlie,6,230,-111,32632254,32632580 +2 + chr17 32686253 32686484 chr17,32686156,32686529,+,MLT1D,LTR,ERVL-MaLR,80,505,0,32686077,32686529 +5 + chr17 32878523 32878633 chr17,32878523,32878633,+,MIR3,SINE,MIR,41,157,-51,32878483,32878684 +6 + chr17 32905662 32905779 chr17,32905535,32905976,-,MER4A1,LTR,ERV1,-28,444,1,32905507,32905976 -1 - chr17 33052801 33052867 chr17,33052801,33052900,+,MLT1J2,LTR,ERVL-MaLR,43,186,-326,33052759,33053226 -1 + chr17 33099969 33100035 chr17,33099846,33100035,+,Charlie23a,DNA,hAT-Charlie,145,334,-5,33099702,33100040 -5 + chr17 33100047 33100193 chr17,33100047,33100193,-,MER5A1,DNA,hAT-Charlie,0,166,12,33100047,33100204 +6 - chr17 33112073 33112096 chr17,33112073,33112096,+,(GA)n,Simple_repeat,Simple_repeat,1,24,0,33112073,33112096 +6 + chr17 33112732 33112817 chr17,33112299,33112965,+,L2b,LINE,L2,2250,2938,-481,33110050,33113446 +3 + chr17 33529787 33529854 chr17,33529770,33529854,+,MIR,SINE,MIR,178,262,0,33529593,33529854 -5 + chr17 33533643 33533760 chr17,33533643,33533796,-,MIR3,SINE,MIR,-6,202,35,33533637,33533830 +1 - chr17 33534567 33534617 chr17,33534567,33534756,-,MIRb,SINE,MIR,-48,220,27,33534519,33534782 -4 - chr17 33565764 33565835 chr17,33565644,33565835,+,MLT1L,LTR,ERVL-MaLR,164,373,-237,33565481,33566072 +1 + chr17 33569157 33569208 chr17,33569133,33569215,-,L2a,LINE,L2,-1,3425,3309,33569132,33572523 -1 - chr17 33580076 33580095 chr17,33579495,33580095,-,LTR12D,LTR,ERV1,-123,1131,559,33579372,33580653 -1 - chr17 33581156 33581440 chr17,33581024,33581440,+,MLT1E2,LTR,ERVL-MaLR,56,521,-106,33580969,33581546 +2 + chr17 33581440 33581465 chr17,33581440,33582049,-,MER51C,LTR,ERV1,0,640,1,33581440,33582049 -5 - chr17 33623454 33623544 chr17,33623242,33623566,-,AluSc,SINE,Alu,0,309,1,33623242,33623566 -3 - chr17 33627027 33627053 chr17,33626649,33627053,+,L2b,LINE,L2,2556,2997,-422,33624094,33627475 +1 + chr17 33627138 33627266 chr17,33627138,33627423,+,L2b,LINE,L2,3061,3371,-4,33624078,33627427 +4 + chr17 33634737 33634850 chr17,33634713,33634850,-,AluY,SINE,Alu,-179,132,3,33634534,33634852 -2 - chr17 33634868 33634964 chr17,33634868,33634964,-,L2a,LINE,L2,-95,3331,3242,33634773,33638205 -6 - chr17 33931132 33931377 chr17,33931086,33931549,-,LTR2,LTR,ERV1,0,463,1,33931086,33931549 +5 - chr17 33932600 33932685 chr17,33932422,33932742,+,AluSp,SINE,Alu,2,312,-1,33932421,33932743 -3 + chr17 33936004 33936106 chr17,33935956,33936106,+,MIRb,SINE,MIR,68,214,-54,33935889,33936160 -4 + chr17 33976552 33976691 chr17,33976552,33976691,-,MIRb,SINE,MIR,-36,232,92,33976516,33976782 -6 - chr17 33980745 33980851 chr17,33980570,33980942,+,LTR16A,LTR,ERVL,1,366,-85,33980570,33981027 +5 + chr17 34000789 34001932 chr17,34000552,34001932,-,L1M3c,LINE,L1,-4569,2538,5,33995983,34001936 +5 - chr17 34002130 34002429 chr17,34002130,34002429,+,LTR50,LTR,ERVL,19,344,-451,34002112,34002880 -6 + chr17 34002450 34002819 chr17,34002450,34002819,+,LTR50,LTR,ERVL,389,794,-1,34002062,34002820 -6 + chr17 34003201 34003336 chr17,34003201,34003336,+,MIRb,SINE,MIR,61,200,-68,34003141,34003404 -6 + chr17 34003511 34003583 chr17,34003511,34003583,+,(ATCATC)n,Simple_repeat,Simple_repeat,1,72,0,34003511,34003583 -6 + chr17 34003603 34003791 chr17,34003603,34003791,-,MIRb,SINE,MIR,-49,219,4,34003554,34003794 +6 - chr17 34004188 34004218 chr17,34004188,34004218,+,(AAGGAA)n,Simple_repeat,Simple_repeat,1,30,0,34004188,34004218 -6 + chr17 34004407 34004515 chr17,34004407,34004515,+,MIR3,SINE,MIR,26,142,-66,34004382,34004581 -6 + chr17 34004515 34004698 chr17,34004515,34004698,+,MIRb,SINE,MIR,3,192,-76,34004513,34004774 -6 + chr17 34004721 34004789 chr17,34004721,34004789,+,CR1-3_Croc,LINE,CR1,3531,3594,-11,34001191,34004800 -6 + chr17 34005342 34005401 chr17,34005342,34005401,+,L1ME4a,LINE,L1,6063,6120,-4,33999280,34005405 -6 + chr17 34005955 34006497 chr17,34005955,34006497,-,L2b,LINE,L2,-37,3338,2790,34005918,34009286 +6 - chr17 34006490 34006549 chr17,34006490,34006549,+,MIRb,SINE,MIR,118,177,-91,34006373,34006640 -6 + chr17 34006619 34006712 chr17,34006619,34006712,-,L1MA7,LINE,L1,0,6291,6199,34006619,34012910 +6 - chr17 34069317 34069448 chr17,34069182,34069448,+,(CCTT)n,Simple_repeat,Simple_repeat,1,274,0,34069182,34069448 -5 + chr17 34069814 34069989 chr17,34069814,34069989,+,MIRb,SINE,MIR,1,173,-89,34069814,34070078 -6 + chr17 34071241 34071251 chr17,34071241,34071333,+,MIR1_Amn,SINE,MIR,50,144,-86,34071192,34071419 -1 + chr17 34082022 34082224 chr17,34081952,34082226,+,L2c,LINE,L2,2923,3219,-168,34079030,34082394 -1 + chr17 34118507 34118603 chr17,34118507,34118603,-,MamSINE1,SINE,tRNA-RTE,0,290,195,34118507,34118797 +6 - chr17 34146760 34146802 chr17,34146374,34146802,-,LTR16A1,LTR,ERVL,-6,450,1,34146368,34146802 -2 - chr17 34147021 34147047 chr17,34147021,34147068,+,A-rich,Low_complexity,Low_complexity,1,47,0,34147021,34147068 +5 + chr17 34161737 34161812 chr17,34161722,34161812,-,MER5A,DNA,hAT-Charlie,-21,168,72,34161701,34161883 -1 - chr17 34161881 34161899 chr17,34161881,34162243,+,L2a,LINE,L2,3000,3425,-1,34158882,34162244 +4 + chr17 34164208 34164249 chr17,34164208,34164249,+,(ATGAA)n,Simple_repeat,Simple_repeat,1,42,0,34164208,34164249 +6 + chr17 34174560 34174643 chr17,34174524,34174643,-,MIRb,SINE,MIR,-132,136,20,34174392,34174662 +4 - chr17 34178133 34178166 chr17,34178133,34178166,+,(AAAC)n,Simple_repeat,Simple_repeat,1,34,0,34178133,34178166 +5 + chr17 34178925 34178973 chr17,34178925,34178977,+,(TTTCCTT)n,Simple_repeat,Simple_repeat,1,49,0,34178925,34178977 -2 + chr17 34181966 34182028 chr17,34181786,34182028,-,MIRb,SINE,MIR,-16,252,3,34181770,34182030 +4 - chr17 34182761 34182845 chr17,34182748,34182966,+,L2,LINE,L2,2584,2832,-587,34180165,34183553 -1 + chr17 34183581 34183623 chr17,34183190,34183623,+,LTR7Y,LTR,ERV1,1,472,0,34183190,34183623 -4 + chr17 34190575 34190668 chr17,34190552,34190876,+,AluJo,SINE,Alu,1,299,-13,34190552,34190889 -3 + chr17 34195914 34195937 chr17,34195803,34196002,+,MIRb,SINE,MIR,42,260,-8,34195762,34196010 -1 + chr17 34725898 34726082 chr17,34725898,34726082,-,MER121,DNA,hAT?,-85,316,127,34725813,34726208 +6 - chr17 34858794 34858820 chr17,34858676,34858820,+,L3,LINE,CR1,3851,3995,-104,34854826,34858924 -4 + chr17 34858833 34859046 chr17,34858833,34859308,+,LTR33,LTR,ERVL,4,515,0,34858830,34859308 -1 + chr17 35164243 35164650 chr17,35164200,35164719,-,MLT1F1,LTR,ERVL-MaLR,0,569,17,35164200,35164735 +5 - chr17 35188522 35188636 chr17,35188467,35188692,-,AluJo,SINE,Alu,-11,301,85,35188456,35188776 -1 - chr17 35231450 35231819 chr17,35231450,35231819,-,L1MC4,LINE,L1,0,8042,7700,35231450,35239518 +5 - chr17 35231846 35232262 chr17,35231846,35232262,-,LTR16B2,LTR,ERVL,-33,429,1,35231813,35232262 +6 - chr17 35232271 35232566 chr17,35232271,35232566,-,AluSz6,SINE,Alu,-9,303,1,35232262,35232566 +6 - chr17 35232607 35232642 chr17,35232607,35234147,-,ERV3-16A3_I-int,LTR,ERVL,-53,5173,3622,35232554,35237768 +2 - chr17 35237826 35237909 chr17,35235371,35237909,-,ERV3-16A3_I-int,LTR,ERVL,-1600,3626,1088,35233771,35238996 +4 - chr17 35242828 35242856 chr17,35242828,35242856,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,29,0,35242828,35242856 -6 + chr17 35321735 35321865 chr17,35321722,35321971,+,HERV4_I-int,LTR,ERV1,6288,6539,0,35315435,35321971 +3 + chr17 35323148 35323278 chr17,35323060,35323568,-,LTR28B,LTR,ERV1,0,974,505,35323060,35324072 -5 - chr17 35324654 35324900 chr17,35324541,35324983,+,LOR1b,LTR,ERV1,1,461,0,35324541,35324983 +5 + chr17 35400878 35401200 chr17,35400832,35401347,-,MLT1D,LTR,ERVL-MaLR,0,505,1,35400832,35401347 +5 - chr17 35402936 35403006 chr17,35402043,35403187,-,L1MDa,LINE,L1,-3549,2988,1828,35398494,35405014 +1 - chr17 35403837 35404253 chr17,35403794,35404253,-,LTR2,LTR,ERV1,0,463,1,35403794,35404253 +5 - chr17 35409465 35409590 chr17,35409362,35409590,+,HERVL74-int,LTR,ERVL,5376,5603,-82,35403987,35409672 -4 + chr17 35409647 35409684 chr17,35409647,35409684,+,MER74B,LTR,ERVL,1,37,-585,35409647,35410269 -6 + chr17 35478322 35478425 chr17,35478322,35478425,-,Tigger16a,DNA,TcMar-Tigger,-95,862,763,35478227,35479187 -6 - chr17 35500299 35500447 chr17,35500299,35500447,+,LTR2,LTR,ERV1,1,140,-323,35500299,35500770 -6 + chr17 35500447 35500462 chr17,35500447,35500742,+,AluY,SINE,Alu,1,295,-16,35500447,35500758 -2 + chr17 35510199 35510270 chr17,35510173,35510744,+,L1MB7,LINE,L1,5561,6165,-19,35504613,35510763 -1 + chr17 35540039 35540342 chr17,35539986,35540411,-,MER34,LTR,ERV1,-3,539,69,35539983,35540479 +5 - chr17 35554735 35554767 chr17,35554735,35554768,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,35554735,35554768 +5 + chr17 35561539 35561644 chr17,35561439,35561751,+,AluSx,SINE,Alu,1,312,0,35561439,35561751 -5 + chr17 35561999 35562077 chr17,35561793,35562092,+,AluSx1,SINE,Alu,2,299,-13,35561792,35562105 -1 + chr17 35573987 35574296 chr17,35573987,35574296,+,AluSz6,SINE,Alu,1,309,-3,35573987,35574299 +6 + chr17 35757199 35757268 chr17,35757192,35757268,+,LTR78,LTR,ERV1,1230,1304,0,35755963,35757268 -5 + chr17 35757268 35757449 chr17,35757268,35757556,+,MLT1L,LTR,ERVL-MaLR,138,407,-203,35757131,35757759 -2 + chr17 35758097 35758245 chr17,35758048,35758245,-,MamGypLTR2c,LTR,Gypsy,-9,1059,860,35758039,35759104 +4 - chr17 35808489 35808590 chr17,35808478,35808590,+,L2c,LINE,L2,3059,3171,-216,35805420,35808806 -5 + chr17 35808684 35808855 chr17,35808684,35808855,+,MIRb,SINE,MIR,45,230,0,35808640,35808855 -6 + chr17 35816815 35816843 chr17,35816815,35816843,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,35816815,35816843 -6 + chr17 35816848 35816941 chr17,35816848,35817101,-,AluJb,SINE,Alu,-38,274,1,35816810,35817101 +2 - chr17 35818526 35818714 chr17,35818526,35818828,+,AluJr4,SINE,Alu,2,297,-15,35818525,35818843 +4 + chr17 35823609 35823713 chr17,35823417,35823728,+,AluY,SINE,Alu,1,304,-7,35823417,35823735 +5 + chr17 35830031 35830157 chr17,35829857,35830157,+,AluSq2,SINE,Alu,1,299,-14,35829857,35830171 -4 + chr17 35830168 35830293 chr17,35830168,35830300,+,FLAM_A,SINE,Alu,1,132,-10,35830168,35830310 -1 + chr17 35868967 35869113 chr17,35868938,35869113,+,MIRc,SINE,MIR,57,237,-31,35868882,35869144 +1 + chr17 35884687 35884779 chr17,35884641,35884803,-,AluJr4,SINE,Alu,-12,300,140,35884629,35884942 -3 - chr17 35885533 35885622 chr17,35885533,35885622,+,MIRc,SINE,MIR,160,246,-22,35885374,35885644 +1 + chr17 35885690 35885854 chr17,35885690,35885854,-,L2a,LINE,L2,-2,3424,3266,35885688,35889119 -6 - chr17 35893744 35894323 chr17,35893744,35894693,-,MER21A,LTR,ERVL,-7,924,10,35893737,35894702 +2 - chr17 35905038 35905313 chr17,35905011,35905751,-,MER4E1,LTR,ERV1,0,781,4,35905011,35905754 +5 - chr17 35907934 35908145 chr17,35907934,35908145,-,MIR,SINE,MIR,-31,231,13,35907903,35908157 +6 - chr17 35908311 35908366 chr17,35908311,35908366,+,A-rich,Low_complexity,Low_complexity,1,55,0,35908311,35908366 -6 + chr17 35987255 35987454 chr17,35987255,35987454,-,MIR,SINE,MIR,-12,250,5,35987243,35987458 -6 - chr17 35987625 35987744 chr17,35987625,35987744,+,MER117,DNA,hAT-Charlie,1,141,-56,35987625,35987800 +6 + chr17 35987799 35987911 chr17,35987799,35987911,-,MIR3,SINE,MIR,-68,140,22,35987731,35987932 -6 - chr17 35987954 35988091 chr17,35987954,35988091,+,L2c,LINE,L2,3248,3385,-2,35984707,35988093 +6 + chr17 35988419 35988829 chr17,35988419,35988829,-,MLT1J2,LTR,ERVL-MaLR,-3,445,1,35988416,35988829 -6 - chr17 35989097 35989210 chr17,35989097,35989210,-,HAL1ME,LINE,L1,-726,1739,1574,35988371,35990783 -6 - chr17 35989282 35989588 chr17,35989282,35989588,-,L1MC4,LINE,L1,-1120,6922,6640,35988162,35996227 -6 - chr17 35989588 35989616 chr17,35989588,35989616,+,(TTTGTT)n,Simple_repeat,Simple_repeat,1,28,0,35989588,35989616 +6 + chr17 35989616 35989890 chr17,35989616,35989890,-,AluSx,SINE,Alu,-31,281,1,35989585,35989890 -6 - chr17 35989890 35990096 chr17,35989890,35990096,-,L1MC4,LINE,L1,-1403,6639,6445,35988487,35996540 -6 - chr17 36009562 36009683 chr17,36008694,36011432,+,HUERS-P2-int,LTR,ERV1,2,2801,-287,36008693,36011719 +1 + chr17 36010020 36011432 chr17,36008694,36011432,+,HUERS-P2-int,LTR,ERV1,2,2801,-287,36008693,36011719 +1 + chr17 36011432 36011618 chr17,36011432,36011848,+,HUERS-P2-int,LTR,ERV1,2665,3088,0,36008768,36011848 +5 + chr17 36012504 36012588 chr17,36011848,36012588,+,LTR1F,LTR,ERV1,1,765,-7,36011848,36012595 +1 + chr17 36012590 36012891 chr17,36012590,36012917,+,LTR46,LTR,ERV1,1,430,-30,36012590,36012947 +5 + chr17 36072866 36072948 chr17,36072803,36073389,+,MLT2B1,LTR,ERVL,1,520,0,36072803,36073389 +1 + chr17 36074636 36074651 chr17,36074286,36074651,+,MER58B,DNA,hAT-Charlie,1,337,-4,36074286,36074655 +2 + chr17 36074651 36074687 chr17,36074651,36074687,-,MLT1K,LTR,ERVL-MaLR,-385,210,187,36074266,36074873 -6 - chr17 36075283 36075375 chr17,36075109,36075397,-,AluSq2,SINE,Alu,-24,289,1,36075085,36075397 -3 - chr17 36076710 36076802 chr17,36076530,36076823,-,AluJr,SINE,Alu,-22,290,2,36076508,36076824 -3 - chr17 36116177 36116217 chr17,36115864,36116246,+,MLT2A1,LTR,ERVL,1,399,-45,36115864,36116291 +1 + chr17 36176229 36176365 chr17,36176229,36176376,+,MIR,SINE,MIR,94,243,-19,36176136,36176395 +1 + chr17 36177411 36177510 chr17,36177411,36177748,+,MER2,DNA,TcMar-Tigger,1,345,0,36177411,36177748 +5 + chr17 36225246 36225369 chr17,36225199,36225567,-,MLT1A1,LTR,ERVL-MaLR,0,408,3,36225199,36225569 +5 - chr17 36226685 36226807 chr17,36226528,36226838,+,AluSx,SINE,Alu,1,312,0,36226528,36226838 -1 + chr17 36634295 36634399 chr17,36634295,36634399,-,MIRb,SINE,MIR,-31,237,124,36634264,36634522 -6 - chr17 36634501 36634698 chr17,36634501,36634705,-,L1ME4c,LINE,L1,-188,642,453,36634313,36635157 -5 - chr17 36861682 36861725 chr17,36861682,36861725,-,L5,LINE,RTE-X,-5,2260,2219,36861677,36863943 +6 - chr17 36861864 36861962 chr17,36861864,36861991,+,MIR3,SINE,MIR,29,161,-101,36861836,36862092 -2 + chr17 36863017 36863119 chr17,36862992,36863193,-,MIRb,SINE,MIR,-8,260,7,36862984,36863199 +3 - chr17 36906997 36907324 chr17,36906997,36907324,-,L2c,LINE,L2,-4,3383,3022,36906993,36910345 +5 - chr17 36932619 36932683 chr17,36932619,36932683,+,(CCCTGC)n,Simple_repeat,Simple_repeat,1,65,0,36932619,36932683 -6 + chr17 36936595 36936634 chr17,36936595,36936634,+,(CCG)n,Simple_repeat,Simple_repeat,1,40,0,36936595,36936634 -1 + chr17 36943186 36943216 chr17,36943186,36943216,+,A-rich,Low_complexity,Low_complexity,1,30,0,36943186,36943216 -6 + chr17 36980167 36980277 chr17,36980060,36980277,-,MIR3,SINE,MIR,-46,216,2,36980014,36980278 -1 - chr17 36998607 36998738 chr17,36998607,36998738,+,FLAM_C,SINE,Alu,3,133,-10,36998605,36998748 +6 + chr17 36998738 36998804 chr17,36998738,36998804,-,L2c,LINE,L2,-28,3359,3291,36998710,37002094 -6 - chr17 36999180 36999198 chr17,36999180,36999259,+,L1MC5a,LINE,L1,2691,2771,-6,36996490,36999265 +4 + chr17 36999926 37000000 chr17,36999555,37000000,-,L2a,LINE,L2,-60,3366,2882,36999495,37002881 -2 - chr17 37000007 37000034 chr17,37000007,37000853,-,L2,LINE,L2,-552,2867,2101,36999455,37002953 -5 - chr17 37034739 37034843 chr17,37034739,37034843,+,L1M5,LINE,L1,5257,5361,-763,37029483,37035606 +6 + chr17 37043019 37043039 chr17,37042729,37043039,-,AluY,SINE,Alu,0,311,2,37042729,37043040 -2 - chr17 37052563 37052775 chr17,37052563,37052833,+,Charlie2a,DNA,hAT-Charlie,35,331,-2530,37052529,37055363 -1 + chr17 37386886 37386944 chr17,37386814,37387116,-,AluJb,SINE,Alu,-6,306,1,37386808,37387116 -1 - chr17 37387251 37387417 chr17,37387129,37387417,-,AluSg,SINE,Alu,-22,288,1,37387107,37387417 -2 - chr17 37387444 37387745 chr17,37387444,37387745,-,AluSz,SINE,Alu,-10,302,1,37387434,37387745 -6 - chr17 37387880 37387926 chr17,37387880,37388156,+,AluJr,SINE,Alu,1,273,-39,37387880,37388195 +5 + chr17 37407936 37408000 chr17,37407894,37408186,-,AluSq2,SINE,Alu,-16,297,1,37407878,37408186 +5 - chr17 37408367 37408550 chr17,37408251,37408550,-,AluSp,SINE,Alu,-12,301,1,37408239,37408550 +4 - chr17 37609739 37609789 chr17,37609731,37609789,+,L1ME3E,LINE,L1,6115,6173,-69,37603617,37609858 +1 + chr17 37610127 37610168 chr17,37610127,37610290,-,AluJb,SINE,Alu,-16,296,134,37610111,37610423 -4 - chr17 37649133 37649399 chr17,37649001,37649517,-,L2c,LINE,L2,-37,3350,2811,37648964,37652327 -1 - chr17 37675824 37675941 chr17,37675622,37675941,-,AluSz,SINE,Alu,-9,303,1,37675613,37675941 -2 - chr17 37798894 37798911 chr17,37798693,37798911,-,Arthur1,DNA,hAT-Tip100,0,3947,3717,37798693,37802627 +5 - chr17 37798911 37798961 chr17,37798911,37799238,+,L1PA17,LINE,L1,5822,6152,-14,37793090,37799252 -2 + chr17 37802101 37802318 chr17,37802070,37802318,-,MLT1L,LTR,ERVL-MaLR,-52,558,298,37802018,37802615 +4 - chr17 37802631 37802788 chr17,37802631,37803446,-,MLT1K-int,LTR,ERVL-MaLR,-19,1368,514,37802612,37803959 +1 - chr17 38450394 38450406 chr17,38450274,38450406,+,MIR3,SINE,MIR,9,131,-137,38450266,38450543 -5 + chr17 38450406 38450705 chr17,38450406,38450705,-,AluJb,SINE,Alu,-3,309,1,38450403,38450705 +5 - chr17 38450705 38450723 chr17,38450705,38450817,+,MIRc,SINE,MIR,132,243,-25,38450574,38450842 -2 + chr17 38601091 38601147 chr17,38601091,38601259,-,MIR3,SINE,MIR,-14,194,17,38601077,38601275 -4 - chr17 38702480 38702552 chr17,38702480,38702552,+,G-rich,Low_complexity,Low_complexity,1,75,0,38702480,38702552 +6 + chr17 38702581 38702734 chr17,38702581,38702734,-,MIRb,SINE,MIR,-19,249,84,38702562,38702817 -6 - chr17 38703067 38703238 chr17,38703067,38703238,+,MIRb,SINE,MIR,50,219,-49,38703018,38703287 +6 + chr17 38704604 38704747 chr17,38704604,38704748,+,L2c,LINE,L2,3204,3387,0,38701401,38704748 +5 + chr17 38715591 38715638 chr17,38715591,38715638,+,(TCC)n,Simple_repeat,Simple_repeat,1,49,0,38715591,38715638 -6 + chr17 38719115 38719223 chr17,38719041,38719223,-,MIRb,SINE,MIR,-1,267,34,38719040,38719256 +4 - chr17 38750516 38750614 chr17,38750516,38750614,-,L2b,LINE,L2,-27,3348,3249,38750489,38753862 -6 - chr17 38751323 38751387 chr17,38751323,38751387,+,(TC)n,Simple_repeat,Simple_repeat,1,67,0,38751323,38751387 +6 + chr17 38904405 38904600 chr17,38904310,38904619,+,AluSx,SINE,Alu,1,309,-3,38904310,38904622 -1 + chr17 38921555 38921584 chr17,38921555,38921584,+,(GT)n,Simple_repeat,Simple_repeat,1,29,0,38921555,38921584 -6 + chr17 38927095 38927139 chr17,38927095,38927139,+,(GT)n,Simple_repeat,Simple_repeat,1,44,0,38927095,38927139 +6 + chr17 38927329 38927639 chr17,38927329,38927639,+,AluSx,SINE,Alu,2,311,-1,38927328,38927640 +6 + chr17 38927760 38928057 chr17,38927760,38928070,+,AluSx1,SINE,Alu,1,311,-1,38927760,38928071 +5 + chr17 39003248 39003719 chr17,39002983,39003755,+,L2,LINE,L2,1602,2472,-947,39001382,39004702 -5 + chr17 39009292 39009384 chr17,39009086,39009384,-,AluJr,SINE,Alu,-19,293,1,39009067,39009384 +5 - chr17 39009384 39009399 chr17,39009384,39009399,+,(TTA)n,Simple_repeat,Simple_repeat,1,16,0,39009384,39009399 -6 + chr17 39012933 39013007 chr17,39012669,39013007,-,MER1B,DNA,hAT-Charlie,0,339,1,39012669,39013007 +4 - chr17 39013007 39013032 chr17,39013007,39013134,+,MIRb,SINE,MIR,110,254,-8,39012898,39013142 -1 + chr17 39166783 39167019 chr17,39166783,39167019,+,L2,LINE,L2,2711,2953,-466,39164073,39167485 +6 + chr17 39167823 39167849 chr17,39167823,39167860,+,MER57B1,LTR,ERV1,299,335,-66,39167525,39167926 +5 + chr17 39405883 39405962 chr17,39405883,39405962,+,OldhAT1,DNA,hAT-Ac,225,313,-2535,39405659,39408497 +6 + chr17 39567267 39567541 chr17,39567267,39567541,+,L2a,LINE,L2,3138,3426,0,39564130,39567541 +6 + chr17 39619613 39619661 chr17,39619557,39619736,-,MIR,SINE,MIR,-82,186,5,39619475,39619740 -1 - chr17 39619753 39619828 chr17,39619737,39619953,-,MIRb,SINE,MIR,-10,258,34,39619727,39619986 -3 - chr17 39622289 39622477 chr17,39622289,39622477,+,MIR,SINE,MIR,13,251,-11,39622277,39622488 +6 + chr17 39758968 39759034 chr17,39758968,39759034,-,MIRb,SINE,MIR,-60,202,139,39758908,39759172 +6 - chr17 39759133 39759447 chr17,39759133,39759447,+,AluJb,SINE,Alu,1,306,-6,39759133,39759453 -6 + chr17 39760154 39760323 chr17,39760154,39760323,-,AluSx,SINE,Alu,-10,302,134,39760144,39760456 +6 - chr17 39760323 39760623 chr17,39760323,39760623,-,AluSp,SINE,Alu,-11,302,1,39760312,39760623 +6 - chr17 39760868 39761087 chr17,39760868,39761087,+,AluJo,SINE,Alu,1,217,-95,39760868,39761182 -6 + chr17 39761434 39761554 chr17,39761434,39761554,+,FLAM_C,SINE,Alu,1,121,-12,39761434,39761566 -6 + chr17 39761554 39761613 chr17,39761554,39761613,+,A-rich,Low_complexity,Low_complexity,1,59,0,39761554,39761613 -6 + chr17 39761692 39762004 chr17,39761692,39762004,-,AluSp,SINE,Alu,-1,312,1,39761691,39762004 +6 - chr17 39762604 39762908 chr17,39762604,39762908,+,AluSx1,SINE,Alu,1,304,-8,39762604,39762916 -6 + chr17 39763749 39763829 chr17,39763749,39763829,-,MIR3,SINE,MIR,-9,199,120,39763740,39763948 +6 - chr17 39927855 39927901 chr17,39927855,39928002,-,MIRc,SINE,MIR,-109,159,2,39927746,39928003 -1 - chr17 39929108 39929453 chr17,39928840,39929453,-,Plat_L3,LINE,CR1,-15,3571,2898,39928825,39932350 -5 - chr17 39934652 39934724 chr17,39934652,39935183,-,MER41A,LTR,ERV1,0,554,1,39934652,39935183 -4 - chr17 39939419 39939588 chr17,39939419,39939588,-,MER5B,DNA,hAT-Charlie,-6,172,5,39939413,39939592 -6 - chr17 40012226 40012756 chr17,40012164,40012756,+,LTR12C,LTR,ERV1,952,1579,0,40011213,40012756 -5 + chr17 40012756 40012804 chr17,40012756,40012979,+,AluJb,SINE,Alu,68,282,-30,40012689,40013009 -2 + chr17 40014238 40014359 chr17,40014081,40014378,+,AluY,SINE,Alu,1,297,-14,40014081,40014392 -3 + chr17 40014425 40014523 chr17,40014389,40014523,+,MIR3,SINE,MIR,37,206,-2,40014353,40014525 -4 + chr17 40113906 40114015 chr17,40113906,40114015,-,MIR3,SINE,MIR,-1,207,96,40113905,40114110 +6 - chr17 40114218 40114517 chr17,40114218,40114517,+,AluSx1,SINE,Alu,3,303,-9,40114216,40114526 -6 + chr17 40114893 40115176 chr17,40114893,40115176,+,AluJb,SINE,Alu,1,291,-21,40114893,40115197 -6 + chr17 40115206 40115381 chr17,40115206,40115381,-,MER5A,DNA,hAT-Charlie,0,189,13,40115206,40115393 +6 - chr17 40340867 40341002 chr17,40340835,40341002,+,MIRb,SINE,MIR,22,214,-54,40340814,40341056 -5 + chr17 40341546 40341598 chr17,40341546,40341598,+,G-rich,Low_complexity,Low_complexity,1,53,0,40341546,40341598 -6 + chr17 40342075 40342166 chr17,40342075,40342166,+,G-rich,Low_complexity,Low_complexity,1,93,0,40342075,40342166 -6 + chr17 40350182 40350212 chr17,40350182,40350212,+,(TG)n,Simple_repeat,Simple_repeat,1,30,0,40350182,40350212 -6 + chr17 40360655 40360744 chr17,40360521,40360744,+,MER33,DNA,hAT-Charlie,102,324,0,40360420,40360744 +1 + chr17 40360746 40360804 chr17,40360746,40360804,+,L2a,LINE,L2,3369,3426,0,40357378,40360804 +6 + chr17 40360793 40360931 chr17,40360793,40360931,-,L2c,LINE,L2,-1002,2417,2270,40359791,40363200 -6 - chr17 40360953 40361012 chr17,40360953,40361012,-,L2c,LINE,L2,-6,3381,3322,40360947,40364333 -6 - chr17 40363410 40363451 chr17,40363410,40363451,+,(GCGGCGC)n,Simple_repeat,Simple_repeat,1,44,0,40363410,40363451 +6 + chr17 40364136 40364203 chr17,40364136,40364203,-,MIR3,SINE,MIR,-28,180,114,40364108,40364316 -6 - chr17 40473859 40474087 chr17,40473859,40474087,-,AluSx,SINE,Alu,-7,305,76,40473852,40474162 +6 - chr17 40474255 40474316 chr17,40474255,40474316,+,GA-rich,Low_complexity,Low_complexity,1,62,0,40474255,40474316 -6 + chr17 40474805 40474884 chr17,40474805,40474884,-,L3b,LINE,CR1,-86,5146,5070,40474719,40479953 +6 - chr17 40475064 40475289 chr17,40475064,40475376,-,AluJo,SINE,Alu,-3,309,1,40475061,40475376 +1 - chr17 40520715 40520762 chr17,40520669,40520762,+,L1M8,LINE,L1,698,792,-1563,40519972,40522325 +2 + chr17 40520846 40520859 chr17,40520846,40520886,+,G-rich,Low_complexity,Low_complexity,1,40,0,40520846,40520886 +4 + chr17 40523370 40523638 chr17,40523339,40523638,-,L2c,LINE,L2,-16,3371,3069,40523323,40526706 -2 - chr17 40525561 40525719 chr17,40524781,40525719,+,L1MEh,LINE,L1,776,1812,-653,40524006,40526372 +1 + chr17 40526444 40526466 chr17,40526001,40526466,+,MLT1J,LTR,ERVL-MaLR,25,512,0,40525977,40526466 +2 + chr17 40526632 40527002 chr17,40526632,40527086,+,LTR79,LTR,ERVL,72,527,0,40526561,40527086 +5 + chr17 40597118 40597356 chr17,40597118,40597356,-,L1ME1,LINE,L1,-1,6178,5944,40597117,40603299 +6 - chr17 40597732 40597955 chr17,40597732,40597955,+,MER115,DNA,hAT-Tip100,143,370,-323,40597590,40598278 -6 + chr17 40597989 40598181 chr17,40597989,40598181,+,MER115,DNA,hAT-Tip100,491,691,-2,40597499,40598183 -6 + chr17 40598296 40598513 chr17,40598296,40598513,-,MIRb,SINE,MIR,-14,254,18,40598282,40598530 +6 - chr17 40648546 40648925 chr17,40648546,40648925,+,L2b,LINE,L2,2992,3365,-10,40645555,40648935 +6 + chr17 40649370 40649653 chr17,40649370,40649653,+,AluY,SINE,Alu,17,294,-17,40649354,40649670 +6 + chr17 40649653 40649677 chr17,40649653,40649677,+,(AT)n,Simple_repeat,Simple_repeat,1,25,0,40649653,40649677 +6 + chr17 40804795 40804854 chr17,40804454,40805184,-,L2b,LINE,L2,-22,3353,2560,40804432,40807743 -3 - chr17 40809149 40809296 chr17,40808845,40809475,+,Charlie7,DNA,hAT-Charlie,5,690,-1922,40808841,40811397 +5 + chr17 40975497 40975745 chr17,40975080,40975745,-,L1MDa,LINE,L1,-4754,1879,1183,40970326,40976927 -2 - chr17 40975745 40975902 chr17,40975745,40975902,+,L1MA2,LINE,L1,6136,6299,-5,40969610,40975907 +6 + chr17 40975902 40975926 chr17,40975902,40977020,-,L1MDa,LINE,L1,-5451,1182,45,40970451,40977064 -5 - chr17 41408957 41409102 chr17,41408957,41409102,-,L2b,LINE,L2,-3,3372,3214,41408954,41412315 -6 - chr17 41409470 41409662 chr17,41409470,41409662,+,MIRc,SINE,MIR,47,250,-18,41409424,41409680 +6 + chr17 41410248 41410317 chr17,41410248,41410549,+,AluSx,SINE,Alu,1,301,-11,41410248,41410560 +4 + chr17 41411274 41411323 chr17,41411098,41411323,-,MER58A,DNA,hAT-Charlie,-3,221,1,41411095,41411323 -2 - chr17 41423646 41423751 chr17,41423646,41423751,-,L2a,LINE,L2,0,3426,3319,41423646,41427069 -6 - chr17 41502271 41502322 chr17,41502271,41502322,+,MIR3,SINE,MIR,129,189,-19,41502143,41502341 +6 + chr17 41550014 41550235 chr17,41550014,41550235,+,MIRb,SINE,MIR,22,268,0,41549993,41550235 -6 + chr17 41550783 41550847 chr17,41550783,41550847,+,FLAM_C,SINE,Alu,1,53,-80,41550783,41550927 -6 + chr17 41551873 41551886 chr17,41551821,41551886,-,MIR3,SINE,MIR,-74,134,70,41551747,41551955 +4 - chr17 41552014 41552069 chr17,41552014,41552069,+,MIR1_Amn,SINE,MIR,104,158,-72,41551911,41552141 -6 + chr17 41665810 41665882 chr17,41665810,41665882,+,L2c,LINE,L2,3316,3386,-1,41662495,41665883 +6 + chr17 41666440 41666514 chr17,41666440,41666514,-,MIR3,SINE,MIR,-52,156,78,41666388,41666591 -6 - chr17 41667242 41667567 chr17,41667242,41667567,-,L2b,LINE,L2,-42,3333,3024,41667200,41670590 -6 - chr17 41851145 41851242 chr17,41851145,41851242,+,AluSz,SINE,Alu,34,132,-180,41851112,41851422 -6 + chr17 41851242 41851258 chr17,41851242,41851258,-,SVA_E,Retroposon,SVA,-1084,297,192,41850158,41851449 +6 - chr17 41851321 41851447 chr17,41851321,41851615,+,AluSg,SINE,Alu,1,296,-14,41851321,41851629 -1 + chr17 42233980 42234070 chr17,42233980,42234070,+,UCON55,DNA,TcMar-Tigger,8,97,-95,42233973,42234165 +6 + chr17 42234577 42234871 chr17,42234577,42234871,+,AluSx,SINE,Alu,1,293,-19,42234577,42234890 +6 + chr17 42235111 42235365 chr17,42235111,42235365,+,L2a,LINE,L2,3134,3426,0,42231978,42235365 +6 + chr17 42269602 42269677 chr17,42269602,42269677,-,LFSINE_Vert,SINE,tRNA,-6,453,375,42269596,42270051 -6 - chr17 42270751 42270959 chr17,42270751,42270959,+,MIR,SINE,MIR,38,262,0,42270714,42270959 -6 + chr17 42275068 42275240 chr17,42275068,42275240,+,MIR3,SINE,MIR,20,197,-11,42275049,42275251 -6 + chr17 42495867 42496089 chr17,42495815,42496089,+,AluSx,SINE,Alu,3,310,-2,42495813,42496091 +1 + chr17 42510239 42510657 chr17,42510239,42510657,-,L2c,LINE,L2,0,3387,2919,42510239,42513575 -6 - chr17 42511191 42511252 chr17,42511191,42511252,-,L2c,LINE,L2,-1159,2260,2194,42510032,42513445 -6 - chr17 42511252 42511519 chr17,42511252,42511538,+,AluSz,SINE,Alu,1,307,-5,42511252,42511543 +5 + chr17 42536510 42536540 chr17,42536473,42536540,+,(GGC)n,Simple_repeat,Simple_repeat,1,71,0,42536473,42536540 +1 + chr17 42552436 42552560 chr17,42552016,42552560,-,MER21A,LTR,ERVL,-374,557,10,42551642,42552569 +5 - chr17 42554008 42554186 chr17,42554008,42554186,-,MIRb,SINE,MIR,-31,237,35,42553977,42554220 +6 - chr17 42554306 42554362 chr17,42554306,42554362,+,G-rich,Low_complexity,Low_complexity,1,57,0,42554306,42554362 -6 + chr17 42561910 42561959 chr17,42561818,42561959,+,MIRc,SINE,MIR,30,175,-93,42561789,42562052 +2 + chr17 42682006 42682020 chr17,42682006,42682116,+,A-rich,Low_complexity,Low_complexity,1,117,0,42682006,42682116 +5 + chr17 42683448 42683503 chr17,42683448,42683503,+,(GTTGG)n,Simple_repeat,Simple_repeat,1,57,0,42683448,42683503 -6 + chr17 42751448 42751626 chr17,42751448,42751626,-,MIRb,SINE,MIR,-70,198,22,42751378,42751647 +6 - chr17 42753914 42754153 chr17,42753910,42754153,-,AluSx1,SINE,Alu,-10,302,46,42753900,42754198 +5 - chr17 42754155 42754307 chr17,42754155,42754307,-,AluSx,SINE,Alu,-159,153,1,42753996,42754307 +6 - chr17 42754309 42754598 chr17,42754309,42754598,-,AluJo,SINE,Alu,-17,295,1,42754292,42754598 +6 - chr17 42754599 42754744 chr17,42754599,42754744,+,MIRb,SINE,MIR,100,248,-14,42754500,42754758 -6 + chr17 42755015 42755081 chr17,42755015,42755081,+,MER5B,DNA,hAT-Charlie,115,172,-6,42754901,42755087 -6 + chr17 42755237 42755479 chr17,42755237,42755479,+,MIR,SINE,MIR,10,262,0,42755228,42755479 -6 + chr17 42755550 42755849 chr17,42755550,42755849,-,AluSq,SINE,Alu,-13,300,1,42755537,42755849 +6 - chr17 42758767 42759022 chr17,42758767,42759051,+,AluJr,SINE,Alu,1,310,-2,42758767,42759053 -2 + chr17 42760610 42760648 chr17,42760610,42760648,+,(TCCCCAC)n,Simple_repeat,Simple_repeat,1,39,0,42760610,42760648 -6 + chr17 42874690 42874748 chr17,42874690,42874748,-,L1MB7,LINE,L1,-16,6168,6112,42874674,42880859 +6 - chr17 42874748 42874863 chr17,42874748,42875056,+,AluY,SINE,Alu,2,305,-6,42874747,42875062 -2 + chr17 42878058 42878073 chr17,42878058,42878260,+,AluSx,SINE,Alu,99,300,-12,42877960,42878272 -2 + chr17 42878937 42878959 chr17,42878937,42878959,+,(CTG)n,Simple_repeat,Simple_repeat,1,22,0,42878937,42878959 -6 + chr17 42879072 42879194 chr17,42879072,42879194,+,AluJb,SINE,Alu,177,298,-14,42878896,42879208 -6 + chr17 42884595 42884686 chr17,42884574,42884867,+,AluJb,SINE,Alu,1,282,-30,42884574,42884897 -3 + chr17 42897687 42897918 chr17,42897665,42897952,+,AluJr,SINE,Alu,2,289,-23,42897664,42897975 -3 + chr17 42975689 42975973 chr17,42975670,42975973,-,AluSg,SINE,Alu,-6,304,2,42975664,42975974 +5 - chr17 42975979 42976277 chr17,42975979,42976277,-,AluSx3,SINE,Alu,-9,302,1,42975970,42976277 +6 - chr17 42976281 42976361 chr17,42976281,42976361,-,MER102b,DNA,hAT-Charlie,-182,159,74,42976099,42976434 +6 - chr17 42976383 42976679 chr17,42976383,42976679,-,AluSz,SINE,Alu,-17,295,1,42976366,42976679 +6 - chr17 42976745 42976867 chr17,42976745,42976867,-,L2c,LINE,L2,-535,2884,2762,42976210,42979628 +6 - chr17 42977008 42977145 chr17,42977008,42977145,+,AluSp,SINE,Alu,1,133,-180,42977008,42977325 -6 + chr17 42977145 42977275 chr17,42977145,42977454,+,AluSx1,SINE,Alu,3,311,-1,42977143,42977455 -1 + chr17 43164183 43164812 chr17,43160720,43165886,-,Harlequin-int,LTR,ERV1,0,6896,1675,43160720,43167560 +5 - chr17 43166980 43167245 chr17,43166028,43167245,-,Harlequin-int,LTR,ERV1,-5792,1104,1,43160236,43167245 +4 - chr17 43167246 43167262 chr17,43167246,43167698,-,LTR2,LTR,ERV1,-10,453,1,43167236,43167698 +2 - chr17 43224863 43224955 chr17,43224863,43225031,-,AluJr4,SINE,Alu,-11,301,135,43224852,43225165 +2 - chr17 43226156 43226347 chr17,43226068,43226366,+,AluJr,SINE,Alu,1,308,-4,43226068,43226370 -1 + chr17 43303160 43303184 chr17,43303160,43303184,+,(CTG)n,Simple_repeat,Simple_repeat,1,24,0,43303160,43303184 -6 + chr17 43304914 43305095 chr17,43304914,43305095,+,AluSx,SINE,Alu,117,299,-13,43304798,43305108 -1 + chr17 43305102 43305397 chr17,43305102,43305400,+,AluSx1,SINE,Alu,2,304,-8,43305101,43305408 -1 + chr17 43360041 43360454 chr17,43359956,43360454,-,MER41C,LTR,ERV1,-1,520,1,43359955,43360454 +5 - chr17 43369845 43370040 chr17,43369789,43370040,+,L1MC4,LINE,L1,7608,7911,-131,43362182,43370171 -5 + chr17 43370072 43370105 chr17,43370072,43370105,+,(AGAG)n,Simple_repeat,Simple_repeat,1,33,0,43370072,43370105 -6 + chr17 43370131 43370167 chr17,43370131,43370167,+,G-rich,Low_complexity,Low_complexity,1,37,0,43370131,43370167 -6 + chr17 43370170 43370269 chr17,43370170,43370269,+,MIRb,SINE,MIR,1,100,-168,43370170,43370437 -6 + chr17 43370270 43370352 chr17,43370270,43370352,+,L1MC4,LINE,L1,7957,8042,0,43362314,43370352 -6 + chr17 43370359 43370652 chr17,43370359,43370652,+,AluSx,SINE,Alu,1,293,-19,43370359,43370671 -6 + chr17 43370654 43370966 chr17,43370654,43370966,+,AluSx1,SINE,Alu,1,312,0,43370654,43370966 -6 + chr17 43370974 43371039 chr17,43370974,43371590,-,L2,LINE,L2,-1481,1938,1321,43369493,43372910 +2 - chr17 43371247 43371426 chr17,43370974,43371590,-,L2,LINE,L2,-1481,1938,1321,43369493,43372910 +3 - chr17 43375928 43376280 chr17,43375909,43376280,-,LTR8,LTR,ERV1,-80,611,256,43375829,43376535 +5 - chr17 43376280 43376579 chr17,43376280,43376579,-,AluSx,SINE,Alu,-19,293,1,43376261,43376579 +6 - chr17 43376579 43376840 chr17,43376579,43376840,-,LTR8,LTR,ERV1,-436,255,1,43376143,43376840 +6 - chr17 43376996 43377273 chr17,43376996,43377273,+,AluSz6,SINE,Alu,1,276,-36,43376996,43377309 -5 + chr17 43385863 43386214 chr17,43385851,43386214,-,AluJb,SINE,Alu,-11,301,3,43385840,43386216 +5 - chr17 43386268 43386363 chr17,43386268,43386363,-,L2,LINE,L2,-3056,363,270,43383212,43386632 +6 - chr17 43386470 43386575 chr17,43386470,43386575,+,MIR,SINE,MIR,23,146,-116,43386448,43386691 -6 + chr17 43386642 43386948 chr17,43386642,43386948,+,AluSq2,SINE,Alu,2,307,-6,43386641,43386954 -6 + chr17 43387229 43387417 chr17,43387229,43387417,-,U2,snRNA,snRNA,-1,187,1,43387228,43387417 +6 - chr17 43387588 43387781 chr17,43387588,43387781,+,AluSc8,SINE,Alu,2,144,-167,43387587,43387948 -6 + chr17 43387781 43388057 chr17,43387781,43388089,+,AluSc8,SINE,Alu,2,310,-1,43387780,43388090 -2 + chr17 43388856 43389199 chr17,43388856,43389213,+,L2c,LINE,L2,3050,3386,-1,43385807,43389214 -1 + chr17 43450897 43451091 chr17,43450853,43451091,+,SVA_E,Retroposon,SVA,412,649,-733,43450442,43451824 +2 + chr17 43609887 43609989 chr17,43609552,43609989,-,LOR1b,LTR,ERV1,0,461,40,43609552,43610028 -2 - chr17 43610017 43610124 chr17,43610017,43610124,+,L2c,LINE,L2,3256,3376,-11,43606762,43610135 +6 + chr17 43680329 43680365 chr17,43680329,43680461,+,MIRb,SINE,MIR,70,201,-67,43680260,43680528 +4 + chr17 43705429 43705556 chr17,43705332,43705556,-,MIRb,SINE,MIR,-24,244,16,43705308,43705571 -2 - chr17 43705768 43705884 chr17,43705768,43706062,-,AluJr,SINE,Alu,-18,294,1,43705750,43706062 -5 - chr17 43782851 43782948 chr17,43782851,43782948,+,MER5B,DNA,hAT-Charlie,1,98,-80,43782851,43783028 -6 + chr17 43929795 43929967 chr17,43929718,43930259,-,LTR46-int,LTR,ERV1,0,6985,6443,43929718,43936701 -3 - chr17 44120458 44120595 chr17,44120458,44120756,+,AluSp,SINE,Alu,1,298,-15,44120458,44120771 +5 + chr17 44176072 44176383 chr17,44176072,44176383,+,AluJb,SINE,Alu,1,309,-3,44176072,44176386 -5 + chr17 44176419 44176613 chr17,44176419,44176613,+,MIR3,SINE,MIR,4,208,0,44176416,44176613 -6 + chr17 44181623 44181741 chr17,44181585,44181776,+,AluSx,SINE,Alu,121,310,-2,44181465,44181778 -3 + chr17 44182930 44183093 chr17,44182781,44183126,+,AluJo,SINE,Alu,1,312,0,44182781,44183126 -3 + chr17 44216148 44216186 chr17,44216148,44216186,+,(CCCAGG)n,Simple_repeat,Simple_repeat,1,38,0,44216148,44216186 +6 + chr17 44221523 44221590 chr17,44221523,44221590,+,(CCTCCTG)n,Simple_repeat,Simple_repeat,1,70,0,44221523,44221590 +6 + chr17 44222818 44222836 chr17,44222818,44222836,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,44222818,44222836 +6 + chr17 44222859 44223055 chr17,44222859,44223055,+,Arthur1A,DNA,hAT-Tip100,2,177,0,44222858,44223055 +6 + chr17 44223112 44223239 chr17,44223112,44223239,+,AluJo,SINE,Alu,1,122,-190,44223112,44223429 +6 + chr17 44223266 44223291 chr17,44223266,44223291,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,44223266,44223291 +6 + chr17 44223325 44223532 chr17,44223325,44223532,+,MIRc,SINE,MIR,20,250,-18,44223306,44223550 +6 + chr17 44299574 44299701 chr17,44299507,44299701,-,LTR16C,LTR,ERVL,0,489,327,44299507,44300027 +5 - chr17 44299701 44299985 chr17,44299701,44299985,+,AluSp,SINE,Alu,1,285,-28,44299701,44300013 -6 + chr17 44299985 44300031 chr17,44299985,44300031,+,(AAAC)n,Simple_repeat,Simple_repeat,1,49,0,44299985,44300031 -6 + chr17 44300031 44300328 chr17,44300031,44300328,-,LTR16C,LTR,ERVL,-163,326,2,44299868,44300329 +6 - chr17 44300406 44300666 chr17,44300406,44300666,+,ERVL-B4-int,LTR,ERVL,4967,5235,-479,44295440,44301145 -6 + chr17 44300666 44300992 chr17,44300666,44300992,+,AluSx1,SINE,Alu,1,311,-1,44300666,44300993 -6 + chr17 44300992 44301022 chr17,44300992,44301022,+,ERVL-B4-int,LTR,ERVL,5236,5264,-450,44295757,44301472 -6 + chr17 44301022 44301237 chr17,44301022,44301237,+,AluSx1,SINE,Alu,1,207,-105,44301022,44301342 -6 + chr17 44301237 44301342 chr17,44301237,44301342,+,ERVL-B4-int,LTR,ERVL,5265,5367,-347,44295973,44301689 -6 + chr17 44301499 44301609 chr17,44301499,44301609,+,ERVL-B4-int,LTR,ERVL,5584,5690,-67,44295916,44301676 -6 + chr17 44301662 44301805 chr17,44301662,44301805,+,LTR50,LTR,ERVL,3,149,-646,44301660,44302451 -6 + chr17 44301805 44302028 chr17,44301805,44302028,+,L1MB3,LINE,L1,4644,4855,-1291,44297162,44303319 -6 + chr17 44302028 44302331 chr17,44302028,44302331,-,AluSz,SINE,Alu,-10,302,1,44302018,44302331 +6 - chr17 44302350 44302488 chr17,44302350,44302488,-,FLAM_A,SINE,Alu,-4,138,1,44302346,44302488 +6 - chr17 44302502 44302577 chr17,44302502,44302577,-,AluJr,SINE,Alu,-16,296,211,44302486,44302787 +5 - chr17 44302583 44302832 chr17,44302583,44302832,+,AluSx,SINE,Alu,1,258,-54,44302583,44302886 -6 + chr17 44302832 44303460 chr17,44302832,44303460,+,L1MB3,LINE,L1,4855,5442,-738,44297978,44304198 -6 + chr17 44303480 44303783 chr17,44303480,44303783,-,AluSx1,SINE,Alu,-10,302,1,44303470,44303783 +6 - chr17 44303785 44303991 chr17,44303785,44303991,-,AluJb,SINE,Alu,-4,308,104,44303781,44304094 +6 - chr17 44304009 44304203 chr17,44304009,44304203,+,U3,snRNA,snRNA,19,217,0,44303991,44304203 -6 + chr17 44304981 44305043 chr17,44304902,44305248,-,MSTD,LTR,ERVL-MaLR,0,396,45,44304902,44305292 +3 - chr17 44308344 44308374 chr17,44308344,44308374,+,(CGAGG)n,Simple_repeat,Simple_repeat,1,30,0,44308344,44308374 -6 + chr17 44309904 44309943 chr17,44309904,44309943,+,(CCTGGCT)n,Simple_repeat,Simple_repeat,1,42,0,44309904,44309943 -6 + chr17 44311385 44311455 chr17,44311338,44311567,+,MIRb,SINE,MIR,15,253,-15,44311324,44311582 -3 + chr17 44331250 44331272 chr17,44331085,44331272,+,L1ME4b,LINE,L1,278,477,-415,44330808,44331687 +2 + chr17 44646459 44646507 chr17,44646459,44646507,+,MADE1,DNA,TcMar-Mariner,1,48,-32,44646459,44646539 -6 + chr17 44646513 44646694 chr17,44646513,44646694,-,MER5A,DNA,hAT-Charlie,-5,184,2,44646508,44646695 +6 - chr17 44647285 44647386 chr17,44647099,44647402,+,AluJb,SINE,Alu,1,294,-18,44647099,44647420 -3 + chr17 44648768 44648914 chr17,44648611,44648914,+,AluSx,SINE,Alu,1,304,-8,44648611,44648922 -4 + chr17 44648996 44649226 chr17,44648996,44649226,+,AluJb,SINE,Alu,1,231,-81,44648996,44649307 -6 + chr17 44650213 44650349 chr17,44650213,44650527,+,AluSq2,SINE,Alu,1,298,-15,44650213,44650542 -1 + chr17 44689916 44690110 chr17,44689916,44690110,-,MIRb,SINE,MIR,-47,221,3,44689869,44690112 -6 - chr17 44690378 44690483 chr17,44690378,44690483,-,MIRb,SINE,MIR,-36,232,130,44690342,44690612 -6 - chr17 44690484 44690620 chr17,44690484,44690620,+,AluSx,SINE,Alu,1,136,-176,44690484,44690796 +6 + chr17 44690620 44690927 chr17,44690620,44690927,+,AluSp,SINE,Alu,1,308,-5,44690620,44690932 +6 + chr17 44690927 44691085 chr17,44690927,44691085,+,AluSx,SINE,Alu,137,312,0,44690791,44691085 +6 + chr17 44691282 44691682 chr17,44691282,44691682,-,L2c,LINE,L2,-4,3383,3035,44691278,44694716 -6 - chr17 44692136 44692278 chr17,44692136,44692278,-,L1MC4a,LINE,L1,-6,7876,7727,44692130,44700004 -6 - chr17 44692291 44692596 chr17,44692291,44692596,-,AluSx1,SINE,Alu,-11,301,1,44692280,44692596 -6 - chr17 44692741 44692878 chr17,44692741,44692878,+,AluSq2,SINE,Alu,1,133,-180,44692741,44693058 +6 + chr17 44692878 44693187 chr17,44692878,44693187,+,AluY,SINE,Alu,1,307,-4,44692878,44693191 +6 + chr17 44693187 44693340 chr17,44693187,44693356,+,AluSq2,SINE,Alu,134,302,-11,44693054,44693367 +5 + chr17 44793199 44793301 chr17,44793181,44793301,-,FLAM_C,SINE,Alu,-10,133,1,44793171,44793301 -1 - chr17 44793305 44793330 chr17,44793305,44793330,-,AluSz6,SINE,Alu,-18,294,275,44793287,44793604 -6 - chr17 44793330 44793374 chr17,44793330,44793635,+,AluSp,SINE,Alu,2,307,-6,44793329,44793641 +4 + chr17 44794089 44794151 chr17,44793921,44794151,+,Tigger3c,DNA,TcMar-Tigger,321,556,-46,44793601,44794197 +2 + chr17 44797563 44797590 chr17,44797541,44797590,+,MIR1_Amn,SINE,MIR,27,81,-149,44797515,44797739 -4 + chr17 44948379 44948506 chr17,44948379,44948506,+,MIRc,SINE,MIR,38,177,-91,44948342,44948597 +6 + chr17 44982514 44982763 chr17,44982253,44982763,+,(TGG)n,Simple_repeat,Simple_repeat,1,511,0,44982253,44982763 +1 + chr17 45146782 45147013 chr17,45146782,45147013,+,MIRc,SINE,MIR,22,263,-5,45146761,45147018 -6 + chr17 45168800 45168854 chr17,45168707,45168854,-,L2a,LINE,L2,-1,3425,3280,45168706,45172133 +5 - chr17 45171272 45171363 chr17,45171272,45171363,-,MIRc,SINE,MIR,-73,195,101,45171199,45171463 +6 - chr17 45218256 45218560 chr17,45218252,45218560,-,AluSx3,SINE,Alu,-3,308,1,45218249,45218560 +5 - chr17 45218562 45218863 chr17,45218562,45218863,-,AluSc8,SINE,Alu,-4,307,1,45218558,45218863 +6 - chr17 45219561 45219632 chr17,45219561,45219698,+,L2b,LINE,L2,3231,3374,-1,45216331,45219699 -2 + chr17 45219776 45220055 chr17,45219776,45220073,+,AluSz,SINE,Alu,1,297,-15,45219776,45220088 -2 + chr17 45220735 45220945 chr17,45220735,45220945,+,MIRb,SINE,MIR,29,265,-3,45220707,45220948 -6 + chr17 45221749 45221766 chr17,45221749,45221766,+,(CGG)n,Simple_repeat,Simple_repeat,1,17,0,45221749,45221766 -1 + chr17 45221986 45222071 chr17,45221986,45222071,+,(CCCCCG)n,Simple_repeat,Simple_repeat,1,86,0,45221986,45222071 -6 + chr17 45238028 45238428 chr17,45238024,45238428,-,L2a,LINE,L2,0,3426,2924,45238024,45241351 +5 - chr17 45239111 45239241 chr17,45239111,45239326,+,MIR,SINE,MIR,3,250,-12,45239109,45239338 -2 + chr17 45240315 45240347 chr17,45240089,45240347,+,L1MB7,LINE,L1,5917,6168,-16,45234173,45240363 -5 + chr17 45247759 45247787 chr17,45247759,45247787,+,(CCCCT)n,Simple_repeat,Simple_repeat,1,28,0,45247759,45247787 -6 + chr17 45249534 45249632 chr17,45249480,45249789,-,AluJb,SINE,Alu,-3,309,1,45249477,45249789 -3 - chr17 45268257 45268420 chr17,45268257,45268420,-,L1ME5,LINE,L1,-84,6110,5938,45268173,45274357 -5 - chr17 45268420 45268551 chr17,45268420,45268551,-,FLAM_A,SINE,Alu,-11,131,1,45268409,45268551 -5 - chr17 45268551 45268630 chr17,45268551,45268858,-,L1ME5,LINE,L1,-257,5937,5620,45268294,45274477 -5 - chr17 45371407 45371422 chr17,45371407,45371422,+,L1ME4b,LINE,L1,835,844,-48,45370573,45371470 -6 + chr17 45371422 45371558 chr17,45371422,45371558,-,AluJr,SINE,Alu,-180,132,1,45371242,45371558 +6 - chr17 45371558 45371591 chr17,45371558,45371607,+,L1ME4b,LINE,L1,845,889,-3,45370714,45371610 -2 + chr17 45397324 45397477 chr17,45397305,45397691,-,L3b,LINE,CR1,-462,3637,3275,45396843,45400965 -5 - chr17 45452844 45452935 chr17,45452744,45452935,-,MER3,DNA,hAT-Charlie,-8,201,1,45452736,45452935 -1 - chr17 45454798 45454837 chr17,45454444,45454837,+,L2a,LINE,L2,1465,1904,-1515,45452980,45456352 +2 + chr17 45454846 45454897 chr17,45454846,45455143,+,AluSx1,SINE,Alu,1,296,-16,45454846,45455159 +4 + chr17 45456270 45456381 chr17,45455294,45456381,+,L2a,LINE,L2,2173,3424,-2,45453122,45456383 +2 + chr17 45531577 45532428 chr17,45531373,45532428,+,L1MB7,LINE,L1,5594,6663,-19,45525780,45532447 +1 + chr17 45532866 45532984 chr17,45532866,45532984,+,AluJo,SINE,Alu,1,118,-194,45532866,45533178 +6 + chr17 45533356 45533390 chr17,45533356,45533390,+,(ATATTT)n,Simple_repeat,Simple_repeat,1,36,0,45533356,45533390 +6 + chr17 45533406 45533532 chr17,45533406,45533532,-,AluJo,SINE,Alu,-188,124,1,45533218,45533532 -6 - chr17 45534505 45534620 chr17,45534310,45534620,-,AluSx1,SINE,Alu,-5,307,2,45534305,45534621 -2 - chr17 45534686 45534710 chr17,45534686,45534882,+,MIRb,SINE,MIR,19,247,-21,45534668,45534903 +5 + chr17 45551440 45551537 chr17,45551284,45551587,+,AluSq2,SINE,Alu,1,305,-8,45551284,45551595 -3 + chr17 45553114 45553267 chr17,45553114,45553422,-,AluSg4,SINE,Alu,-2,308,1,45553112,45553422 -4 - chr17 45553659 45553680 chr17,45553424,45553680,-,AluSp,SINE,Alu,-20,293,1,45553404,45553680 -2 - chr17 45554159 45554247 chr17,45553956,45554247,-,AluJr,SINE,Alu,-8,304,1,45553948,45554247 -2 - chr17 45562646 45562664 chr17,45562527,45562664,+,MER5B,DNA,hAT-Charlie,29,178,0,45562499,45562664 +2 + chr17 45629904 45630158 chr17,45629831,45630451,-,L3,LINE,CR1,0,4099,3439,45629831,45633889 -3 - chr17 45672827 45672884 chr17,45672811,45672884,+,L2b,LINE,L2,3240,3317,-58,45669572,45672942 +2 + chr17 45731703 45731944 chr17,45731606,45732188,-,LTR8B,LTR,ERV1,-16,804,219,45731590,45732406 +5 - chr17 45732710 45732805 chr17,45732710,45732805,-,MLT1O,LTR,ERVL-MaLR,-335,207,111,45732375,45732915 +6 - chr17 45843933 45844161 chr17,45843933,45844362,-,MLT1J2,LTR,ERVL-MaLR,0,448,5,45843933,45844366 +5 - chr17 45895048 45895091 chr17,45895048,45895091,+,(GT)n,Simple_repeat,Simple_repeat,1,43,0,45895048,45895091 -6 + chr17 45907670 45907753 chr17,45907632,45907753,+,MamRep434,DNA,TcMar-Tigger,298,414,-12,45907335,45907765 -5 + chr17 45907808 45907886 chr17,45907808,45907886,-,MIRb,SINE,MIR,-66,202,117,45907742,45908002 +6 - chr17 46196058 46196263 chr17,46195959,46196263,+,AluJb,SINE,Alu,1,310,-2,46195959,46196265 +1 + chr17 46196340 46196381 chr17,46196340,46196381,+,MLT1L,LTR,ERVL-MaLR,171,212,-398,46196170,46196779 +6 + chr17 46196484 46196693 chr17,46196484,46196693,+,MLT1L,LTR,ERVL-MaLR,346,572,-38,46196139,46196731 +5 + chr17 46558845 46558976 chr17,46558845,46558976,-,FLAM_C,SINE,Alu,-10,133,2,46558835,46558977 +6 - chr17 46559821 46559950 chr17,46559821,46559950,-,MLT1H,LTR,ERVL-MaLR,-326,223,95,46559495,46560044 +6 - chr17 46560569 46560685 chr17,46560569,46560875,-,AluJb,SINE,Alu,-9,303,1,46560560,46560875 +2 - chr17 46562469 46562514 chr17,46562373,46562514,+,L1ME4b,LINE,L1,722,886,-6,46561652,46562520 -4 + chr17 46562593 46562759 chr17,46562593,46562759,+,Charlie22a,DNA,hAT-Charlie,97,264,-227,46562497,46562986 -6 + chr17 46562759 46562795 chr17,46562759,46562885,+,AluJb,SINE,Alu,89,213,-99,46562671,46562984 -1 + chr17 46909742 46909814 chr17,46909670,46909814,-,L1PA13,LINE,L1,0,6172,5991,46909670,46915804 +5 - chr17 46910049 46910166 chr17,46910049,46910185,+,MIR3,SINE,MIR,3,149,-59,46910047,46910244 -2 + chr17 46911482 46911512 chr17,46911482,46911601,+,MIR3,SINE,MIR,34,152,-116,46911449,46911717 -1 + chr17 46916770 46916831 chr17,46916709,46917075,-,MSTD,LTR,ERVL-MaLR,0,396,4,46916709,46917078 +5 - chr17 46917165 46917273 chr17,46917078,46917737,-,MSTD-int,LTR,ERVL-MaLR,0,1735,1055,46917078,46918791 +3 - chr17 47007840 47007884 chr17,47007477,47007903,-,MER75,DNA,PiggyBac,-95,419,2,47007382,47007904 +3 - chr17 47056207 47056261 chr17,47056119,47056261,-,MIRb,SINE,MIR,-118,150,18,47056001,47056278 +5 - chr17 47056364 47056407 chr17,47056364,47056407,-,AluJr,SINE,Alu,-145,167,127,47056219,47056533 +6 - chr17 47056423 47056753 chr17,47056423,47057848,-,LTR12C,LTR,ERV1,0,1579,2,47056423,47057849 +5 - chr17 47067414 47067537 chr17,47065563,47068369,-,HERVIP10FH-int,LTR,ERV1,-259,4843,2041,47065304,47070409 +1 - chr17 47071446 47071478 chr17,47071181,47071478,-,MER4D0,LTR,ERV1,-592,280,1,47070589,47071478 +5 - chr17 47071549 47071650 chr17,47071549,47071686,+,MIRb,SINE,MIR,76,211,-57,47071474,47071743 -2 + chr17 47082035 47082074 chr17,47082035,47082074,+,L1ME3Cz,LINE,L1,9,45,-952,47082027,47083026 -6 + chr17 47082074 47082350 chr17,47082074,47082388,+,AluSp,SINE,Alu,1,310,-3,47082074,47082391 -2 + chr17 47099835 47099866 chr17,47099807,47099866,+,MLT1A,LTR,ERVL-MaLR,34,96,-294,47099774,47100160 -5 + chr17 47161075 47161133 chr17,47161057,47161283,-,AluJr4,SINE,Alu,-12,300,1,47161045,47161283 +5 - chr17 47161723 47161771 chr17,47161469,47161771,+,AluSx1,SINE,Alu,2,304,-8,47161468,47161779 -4 + chr17 47162019 47162064 chr17,47162019,47162337,+,L2,LINE,L2,2434,2759,-660,47159586,47162997 -1 + chr17 47170145 47170213 chr17,47170145,47170213,+,(TTTC)n,Simple_repeat,Simple_repeat,1,69,0,47170145,47170213 +6 + chr17 47170216 47170408 chr17,47170216,47170483,-,AluJo,SINE,Alu,-30,282,1,47170186,47170483 -4 - chr17 47170960 47171049 chr17,47170819,47171119,+,AluJo,SINE,Alu,2,304,-8,47170818,47171127 +5 + chr17 47318472 47318620 chr17,47318420,47319223,-,MLT1F1-int,LTR,ERVL-MaLR,-5,1484,662,47318415,47319884 +3 - chr17 47423362 47423403 chr17,47423128,47423403,+,L1MC4,LINE,L1,7685,8042,0,47415444,47423403 -4 + chr17 47626006 47626123 chr17,47625819,47626123,+,AluSp,SINE,Alu,1,293,-20,47625819,47626143 -5 + chr17 47626297 47626431 chr17,47626297,47626431,-,Tigger19b,DNA,TcMar-Tigger,-304,246,89,47625993,47626519 +6 - chr17 47636512 47636601 chr17,47636162,47636654,-,HAL1,LINE,L1,-368,2139,1644,47635794,47638297 +1 - chr17 47682557 47682590 chr17,47682557,47682590,+,(GCCGCA)n,Simple_repeat,Simple_repeat,1,33,0,47682557,47682590 -6 + chr17 47863342 47863419 chr17,47863324,47863442,+,L2a,LINE,L2,3298,3426,0,47860027,47863442 +1 + chr17 47864453 47864568 chr17,47864231,47864568,-,AluJr,SINE,Alu,0,312,1,47864231,47864568 -2 - chr17 47864589 47864630 chr17,47864589,47864630,+,LFSINE_Vert,SINE,tRNA,143,185,-274,47864447,47864904 +6 + chr17 47865028 47865063 chr17,47865028,47865063,+,GA-rich,Low_complexity,Low_complexity,1,35,0,47865028,47865063 +6 + chr17 47879472 47879761 chr17,47879447,47879761,-,AluJb,SINE,Alu,0,312,2,47879447,47879762 +5 - chr17 47879816 47880043 chr17,47879816,47880043,-,AluJr,SINE,Alu,-6,306,85,47879810,47880127 +6 - chr17 47880469 47880776 chr17,47880469,47880776,+,AluSx,SINE,Alu,2,308,-4,47880468,47880780 -6 + chr17 47881324 47881394 chr17,47881324,47881394,-,MIR,SINE,MIR,0,262,188,47881324,47881581 +6 - chr17 47881394 47881690 chr17,47881394,47881690,+,AluY,SINE,Alu,1,296,-15,47881394,47881705 -6 + chr17 47881690 47881763 chr17,47881690,47881763,-,MIR,SINE,MIR,-75,187,91,47881615,47881853 +6 - chr17 47891261 47891460 chr17,47891261,47891460,-,L1PA6,LINE,L1,0,6154,5960,47891261,47897419 +5 - chr17 47892190 47892330 chr17,47892190,47892330,-,MER5B,DNA,hAT-Charlie,-6,172,17,47892184,47892346 +6 - chr17 47892331 47892559 chr17,47892331,47892559,+,AluJr,SINE,Alu,1,228,-84,47892331,47892643 -6 + chr17 47892589 47892889 chr17,47892589,47892889,+,AluSg,SINE,Alu,1,300,-10,47892589,47892899 -6 + chr17 47893096 47893433 chr17,47893096,47893433,+,AluSz,SINE,Alu,3,312,0,47893094,47893433 -6 + chr17 47894117 47894412 chr17,47894117,47894412,-,AluJr4,SINE,Alu,-13,299,1,47894104,47894412 +6 - chr17 47894646 47894766 chr17,47894646,47894766,-,L2b,LINE,L2,-528,2891,2762,47894118,47897527 +6 - chr17 47894770 47894831 chr17,47894770,47894831,-,MIRb,SINE,MIR,-11,257,193,47894759,47895023 +6 - chr17 47894865 47895013 chr17,47894865,47895013,+,MER112,DNA,hAT-Charlie,60,223,-38,47894806,47895051 -6 + chr17 47895027 47895061 chr17,47895027,47895061,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,47895027,47895061 -6 + chr17 47895079 47895148 chr17,47895079,47895148,-,MIRb,SINE,MIR,-102,166,97,47894977,47895244 +6 - chr17 47895334 47895399 chr17,47895334,47895399,-,MER5A1,DNA,hAT-Charlie,0,166,103,47895334,47895501 +6 - chr17 47899353 47899486 chr17,47899353,47899486,-,FLAM_C,SINE,Alu,-14,129,1,47899339,47899486 +6 - chr17 47918539 47918571 chr17,47918539,47918571,-,MIRc,SINE,MIR,-192,76,45,47918347,47918615 +2 - chr17 47929815 47929917 chr17,47929815,47929917,-,MamRTE1,LINE,RTE-BovB,-3532,280,180,47926283,47930096 +6 - chr17 47947555 47947642 chr17,47947503,47947825,-,AluSc,SINE,Alu,0,309,2,47947503,47947826 +5 - chr17 47947891 47947941 chr17,47947825,47947941,-,AluSz,SINE,Alu,-196,116,1,47947629,47947941 +4 - chr17 47947984 47948102 chr17,47947984,47948102,+,L3,LINE,CR1,3818,3942,-157,47944167,47948259 -6 + chr17 47980398 47980566 chr17,47980259,47980566,-,AluJr4,SINE,Alu,0,312,1,47980259,47980566 +5 - chr17 48045141 48045258 chr17,48044951,48045258,-,AluJb,SINE,Alu,-7,305,1,48044944,48045258 +5 - chr17 48046309 48046566 chr17,48046309,48046566,-,AluJo,SINE,Alu,-11,301,1,48046298,48046566 +6 - chr17 48046904 48046961 chr17,48046904,48046961,+,FLAM_A,SINE,Alu,10,79,-63,48046895,48047024 -6 + chr17 48046934 48046986 chr17,48046934,48046986,+,FLAM_C,SINE,Alu,54,108,-194,48046881,48047180 -6 + chr17 48047297 48047472 chr17,48047297,48047472,+,MER5A,DNA,hAT-Charlie,1,187,-2,48047297,48047474 -6 + chr17 48203992 48204077 chr17,48203894,48204077,-,MIRc,SINE,MIR,-1,267,60,48203893,48204136 -2 - chr17 48204077 48204402 chr17,48204077,48204402,-,AluSq2,SINE,Alu,-7,306,1,48204070,48204402 -6 - chr17 48204402 48204469 chr17,48204402,48204469,-,MIRc,SINE,MIR,-206,62,8,48204196,48204476 -6 - chr17 48307334 48307363 chr17,48307334,48307363,+,GA-rich,Low_complexity,Low_complexity,1,31,0,48307334,48307363 +6 + chr17 48308674 48308762 chr17,48308674,48308897,+,MIR,SINE,MIR,56,268,0,48308619,48308897 +5 + chr17 48377262 48377293 chr17,48377041,48377293,-,L2,LINE,L2,-1843,1576,1313,48375198,48378605 +5 - chr17 48377293 48377406 chr17,48377293,48377605,+,AluJb,SINE,Alu,2,308,-4,48377292,48377609 -2 + chr17 48460370 48460476 chr17,48460169,48460560,+,MLT1I,LTR,ERVL-MaLR,1,411,0,48460169,48460560 +1 + chr17 48465466 48465755 chr17,48465466,48465755,+,AluSz,SINE,Alu,3,293,-19,48465464,48465774 +6 + chr17 48546065 48546087 chr17,48546065,48546098,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,48546065,48546098 +5 + chr17 48551096 48551176 chr17,48551096,48551176,+,(CCG)n,Simple_repeat,Simple_repeat,1,80,0,48551096,48551176 +6 + chr17 48579792 48579817 chr17,48579792,48579817,+,(AT)n,Simple_repeat,Simple_repeat,1,25,0,48579792,48579817 -6 + chr17 48580001 48580046 chr17,48580001,48580046,+,(GGTTT)n,Simple_repeat,Simple_repeat,1,46,0,48580001,48580046 -6 + chr17 48580316 48580337 chr17,48580316,48580337,+,(T)n,Simple_repeat,Simple_repeat,1,21,0,48580316,48580337 -6 + chr17 48606350 48606392 chr17,48606350,48606392,+,A-rich,Low_complexity,Low_complexity,1,43,0,48606350,48606392 +6 + chr17 48636527 48636553 chr17,48636527,48636553,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,48636527,48636553 -5 + chr17 48636897 48636993 chr17,48636897,48637099,-,MIRc,SINE,MIR,-50,218,22,48636847,48637120 +2 - chr17 48639191 48639269 chr17,48639191,48639269,-,L2a,LINE,L2,-1,3425,3351,48639190,48642619 +6 - chr17 48683367 48683417 chr17,48683209,48683460,+,L2c,LINE,L2,3061,3344,-43,48680149,48683503 +1 + chr17 48700612 48700696 chr17,48700440,48700750,-,L1MD1,LINE,L1,-4514,2119,1720,48695926,48702469 -3 - chr17 48704061 48704234 chr17,48704061,48704234,+,MIRb,SINE,MIR,15,189,-79,48704047,48704313 +6 + chr17 48706758 48706881 chr17,48706758,48706881,+,(TC)n,Simple_repeat,Simple_repeat,1,129,0,48706758,48706881 +6 + chr17 48707056 48707328 chr17,48707056,48707328,-,L1ME4b,LINE,L1,-1,891,614,48707055,48707941 -6 - chr17 48733613 48733888 chr17,48733613,48733989,-,L1MC4,LINE,L1,-4972,1243,812,48728641,48734800 -5 - chr17 48933016 48933066 chr17,48932929,48933066,+,L2c,LINE,L2,3250,3381,-6,48929680,48933072 +2 + chr17 49012974 49013026 chr17,49012974,49013171,+,MIRc,SINE,MIR,89,263,-5,49012886,49013176 -2 + chr17 49171895 49173246 chr17,49171154,49175653,-,HERVK9-int,LTR,ERVK,-1,6020,1502,49171153,49177154 -5 - chr17 49248239 49248302 chr17,49247966,49248413,-,L2b,LINE,L2,-3,3372,2814,49247963,49251226 -1 - chr17 49252854 49252918 chr17,49252792,49253209,-,L2a,LINE,L2,0,3426,2959,49252792,49256167 -3 - chr17 49254691 49254966 chr17,49254658,49254966,-,AluSz,SINE,Alu,-5,307,2,49254653,49254967 -2 - chr17 49255227 49255338 chr17,49255227,49255338,+,Charlie15a,DNA,hAT-Charlie,36,159,-65,49255192,49255403 +6 + chr17 49255338 49255363 chr17,49255338,49255363,+,(TG)n,Simple_repeat,Simple_repeat,1,25,0,49255338,49255363 +6 + chr17 49255363 49255402 chr17,49255363,49255402,+,Charlie15a,DNA,hAT-Charlie,160,199,-25,49255204,49255427 +6 + chr17 49255406 49255453 chr17,49255406,49255453,+,(ACAC)n,Simple_repeat,Simple_repeat,1,47,0,49255406,49255453 +6 + chr17 49255563 49255798 chr17,49255563,49255798,+,AluSg,SINE,Alu,1,235,-75,49255563,49255873 +6 + chr17 49255980 49256156 chr17,49255980,49256156,+,L1ME4b,LINE,L1,727,892,0,49255254,49256156 +6 + chr17 49256169 49256449 chr17,49256169,49256479,+,AluSx1,SINE,Alu,1,312,0,49256169,49256479 +5 + chr17 49258433 49258542 chr17,49258249,49258542,-,AluJb,SINE,Alu,-17,295,1,49258232,49258542 -2 - chr17 49364279 49364349 chr17,49364149,49364422,+,MSTD,LTR,ERVL-MaLR,143,390,-6,49364007,49364428 +3 + chr17 49366100 49366115 chr17,49366100,49366413,-,AluJo,SINE,Alu,-1,311,1,49366099,49366413 -5 - chr17 49369837 49369907 chr17,49369837,49369907,-,MIR1_Amn,SINE,MIR,-158,72,2,49369679,49369908 -6 - chr17 49373013 49373086 chr17,49372986,49373192,-,AluJb,SINE,Alu,-7,305,127,49372979,49373318 -3 - chr17 49379980 49380074 chr17,49379964,49380074,+,L3b,LINE,CR1,4946,5058,-174,49375019,49380248 +2 + chr17 49457861 49458096 chr17,49457460,49458096,-,L2c,LINE,L2,-7,3380,2654,49457453,49460749 +5 - chr17 49458623 49458736 chr17,49458623,49458935,+,AluSx4,SINE,Alu,1,306,-4,49458623,49458939 -2 + chr17 49460422 49460506 chr17,49460346,49460506,-,MIRb,SINE,MIR,-87,181,17,49460259,49460522 +4 - chr17 49460934 49461224 chr17,49460934,49461224,+,MER103C,DNA,hAT-Charlie,5,291,-6,49460930,49461230 -6 + chr17 49461240 49461383 chr17,49461240,49461383,-,L2,LINE,L2,-557,2862,2701,49460683,49464083 +6 - chr17 49476877 49476988 chr17,49476707,49477017,+,AluSq2,SINE,Alu,1,310,-3,49476707,49477020 +5 + chr17 49494240 49494340 chr17,49494240,49494340,-,L2c,LINE,L2,0,3387,3276,49494240,49497615 +6 - chr17 49494382 49494442 chr17,49494382,49494442,+,(TG)n,Simple_repeat,Simple_repeat,1,61,0,49494382,49494442 -6 + chr17 49494815 49494880 chr17,49494815,49494880,+,G-rich,Low_complexity,Low_complexity,1,68,0,49494815,49494880 -6 + chr17 49495191 49495253 chr17,49495191,49495253,+,(GGCGG)n,Simple_repeat,Simple_repeat,1,61,0,49495191,49495253 -6 + chr17 49495285 49495358 chr17,49495285,49495358,+,(CGCAG)n,Simple_repeat,Simple_repeat,1,79,0,49495285,49495358 -6 + chr17 49496636 49496686 chr17,49496636,49496686,+,(CGCGC)n,Simple_repeat,Simple_repeat,1,51,0,49496636,49496686 -6 + chr17 49496988 49497107 chr17,49496988,49497107,-,MIR3,SINE,MIR,-68,140,20,49496920,49497126 +6 - chr17 49544981 49545115 chr17,49544981,49545115,-,MER5A,DNA,hAT-Charlie,-36,142,8,49544945,49545122 +6 - chr17 49573819 49573974 chr17,49573546,49573974,+,L2c,LINE,L2,2916,3384,-3,49570631,49573977 -4 + chr17 49834239 49834444 chr17,49834160,49834444,-,AluJb,SINE,Alu,-25,287,1,49834135,49834444 -1 - chr17 49836354 49836454 chr17,49836221,49836537,-,L2a,LINE,L2,-31,3395,3002,49836190,49839538 -5 - chr17 49846932 49846961 chr17,49846869,49846961,-,MIR3,SINE,MIR,-10,198,104,49846859,49847064 -2 - chr17 49847443 49847666 chr17,49847443,49847666,+,MIR,SINE,MIR,24,252,-10,49847420,49847676 +6 + chr17 49847670 49847726 chr17,49847670,49847726,+,(AC)n,Simple_repeat,Simple_repeat,1,56,0,49847670,49847726 +6 + chr17 49848740 49848837 chr17,49848740,49848925,+,L2c,LINE,L2,2790,2983,-436,49845951,49849361 +5 + chr17 49896027 49896112 chr17,49896027,49896239,-,MIRb,SINE,MIR,-15,253,53,49896012,49896291 -4 - chr17 49900771 49900893 chr17,49900771,49901077,+,AluSx,SINE,Alu,1,311,-1,49900771,49901078 +5 + chr17 49932752 49932918 chr17,49932752,49932967,-,MIRc,SINE,MIR,-41,227,4,49932711,49932970 -5 - chr17 50016398 50016448 chr17,50016293,50016448,+,MER70B,LTR,ERVL,320,476,-102,50015974,50016550 +2 + chr17 50016446 50016478 chr17,50016446,50016478,+,MER70B,LTR,ERVL,441,472,0,50016006,50016478 +6 + chr17 50016713 50016844 chr17,50016713,50017012,+,AluSx1,SINE,Alu,1,301,-11,50016713,50017023 +5 + chr17 50050802 50050910 chr17,50050802,50050910,+,MIR,SINE,MIR,120,256,-6,50050683,50050916 -6 + chr17 50051303 50051344 chr17,50051303,50051344,+,G-rich,Low_complexity,Low_complexity,1,42,0,50051303,50051344 -6 + chr17 50051814 50051858 chr17,50051814,50051858,+,L2c,LINE,L2,3317,3373,-14,50048498,50051872 -6 + chr17 50052104 50052208 chr17,50052104,50052208,-,MIR3,SINE,MIR,-41,167,54,50052063,50052261 +6 - chr17 50052326 50052370 chr17,50052326,50052370,+,G-rich,Low_complexity,Low_complexity,1,48,0,50052326,50052370 -6 + chr17 50052514 50052555 chr17,50052514,50052555,+,L2c,LINE,L2,3124,3166,-221,50049391,50052776 -6 + chr17 50052574 50052635 chr17,50052574,50052964,-,LTR52,LTR,ERVL,0,421,1,50052574,50052964 +2 - chr17 50055726 50055739 chr17,50055726,50055750,+,(CAG)n,Simple_repeat,Simple_repeat,1,24,0,50055726,50055750 -1 + chr17 50094065 50094160 chr17,50094062,50094160,+,MIRb,SINE,MIR,117,237,-31,50093946,50094191 +1 + chr17 50094220 50094364 chr17,50094220,50094364,+,L2b,LINE,L2,3222,3352,-35,50090999,50094399 +6 + chr17 50098751 50098806 chr17,50098751,50098806,+,L2b,LINE,L2,3322,3381,-6,50095430,50098812 -6 + chr17 50098837 50098899 chr17,50098837,50099039,-,L2b,LINE,L2,-245,3142,2941,50098592,50101979 +1 - chr17 50100704 50100858 chr17,50100622,50100858,-,MIR,SINE,MIR,0,262,18,50100622,50100875 +5 - chr17 50158333 50158623 chr17,50158289,50158808,-,MLT1L,LTR,ERVL-MaLR,-15,595,4,50158274,50158811 +5 - chr17 50163523 50163759 chr17,50163406,50163759,+,L1MC5,LINE,L1,8886,9301,-3,50154521,50163762 -5 + chr17 50164686 50164730 chr17,50164686,50164730,-,MIRb,SINE,MIR,-34,234,192,50164652,50164921 +6 - chr17 50164722 50164888 chr17,50164722,50164888,+,MIR,SINE,MIR,70,228,-34,50164653,50164922 -6 + chr17 50164905 50165001 chr17,50164905,50165001,+,L2c,LINE,L2,3278,3379,-8,50161628,50165009 -6 + chr17 50164989 50165165 chr17,50164989,50165165,-,MIRb,SINE,MIR,-51,217,18,50164938,50165182 +6 - chr17 50209336 50209406 chr17,50209266,50209439,-,MIR3,SINE,MIR,-2,206,30,50209264,50209468 -3 - chr17 50212105 50212121 chr17,50212105,50212289,-,MIR,SINE,MIR,-32,230,37,50212073,50212325 -4 - chr17 50212933 50213070 chr17,50212788,50213087,+,AluSq,SINE,Alu,1,297,-16,50212788,50213103 -5 + chr17 50214101 50214380 chr17,50214073,50214380,-,AluSx3,SINE,Alu,-6,305,1,50214067,50214380 -2 - chr17 50215388 50215420 chr17,50215388,50215767,-,L1MD3,LINE,L1,0,7995,7618,50215388,50223384 -5 - chr17 50281577 50281637 chr17,50281442,50281637,+,L1ME3G,LINE,L1,545,759,-165,50280898,50281802 -5 + chr17 50283958 50284207 chr17,50282965,50284664,+,L2,LINE,L2,846,2853,-566,50282120,50285230 -3 + chr17 50287740 50287855 chr17,50287600,50287896,+,AluJo,SINE,Alu,11,292,-20,50287590,50287916 -1 + chr17 50362973 50363093 chr17,50362973,50363093,-,AluJo,SINE,Alu,-192,120,1,50362781,50363093 +6 - chr17 50363257 50363344 chr17,50363257,50363344,-,MER5B,DNA,hAT-Charlie,-77,101,15,50363180,50363358 +6 - chr17 50364949 50364968 chr17,50364949,50364968,+,(CTG)n,Simple_repeat,Simple_repeat,1,19,0,50364949,50364968 -6 + chr17 50475819 50475930 chr17,50475737,50475930,-,L1MB8,LINE,L1,-48,6130,5946,50475689,50481875 -1 - chr17 50476465 50476629 chr17,50476465,50476629,-,MIRb,SINE,MIR,-35,233,53,50476430,50476681 -6 - chr17 50476629 50476871 chr17,50476629,50476871,-,MER70A,LTR,ERVL,0,472,266,50476629,50477136 -6 - chr17 50476871 50477155 chr17,50476871,50477155,-,AluSx,SINE,Alu,-4,308,1,50476867,50477155 -6 - chr17 50477155 50477204 chr17,50477155,50477204,-,MER70A,LTR,ERVL,-207,265,227,50476948,50477430 -6 - chr17 50477204 50477510 chr17,50477204,50477510,-,AluSc8,SINE,Alu,-4,307,2,50477200,50477511 -6 - chr17 50477510 50477662 chr17,50477510,50477662,-,MER70A,LTR,ERVL,-246,226,82,50477264,50477743 -6 - chr17 50477662 50477943 chr17,50477662,50477943,-,AluSx1,SINE,Alu,-11,301,19,50477651,50477961 -6 - chr17 50477943 50478025 chr17,50477943,50478025,-,MER70A,LTR,ERVL,-391,81,1,50477552,50478025 -6 - chr17 50478025 50478058 chr17,50478025,50478058,-,MIRb,SINE,MIR,-216,52,20,50477809,50478077 -6 - chr17 50478262 50478339 chr17,50478262,50478339,+,AluJr4,SINE,Alu,144,218,-94,50478119,50478433 +6 + chr17 50503412 50503549 chr17,50503238,50503549,-,AluJo,SINE,Alu,-7,305,6,50503231,50503554 +5 - chr17 50537345 50537501 chr17,50537345,50537539,+,MIRb,SINE,MIR,4,224,-44,50537342,50537583 -2 + chr17 50556441 50556576 chr17,50556441,50556576,-,L3b,LINE,CR1,-199,5033,4900,50556242,50561475 +6 - chr17 50557110 50557269 chr17,50557110,50557269,-,MIRb,SINE,MIR,-12,256,84,50557098,50557352 +5 - chr17 50693848 50694027 chr17,50693848,50694149,+,AluSz,SINE,Alu,1,302,-10,50693848,50694159 +4 + chr17 50722074 50722188 chr17,50722027,50722188,+,MER5A,DNA,hAT-Charlie,10,152,-37,50722018,50722225 +1 + chr17 50722188 50722495 chr17,50722188,50722495,-,AluSc,SINE,Alu,-3,306,1,50722185,50722495 -6 - chr17 50722495 50722532 chr17,50722495,50722532,+,MER5A,DNA,hAT-Charlie,153,189,0,50722343,50722532 +6 + chr17 50723661 50723933 chr17,50723661,50723933,-,AluSz6,SINE,Alu,-19,293,2,50723642,50723934 -6 - chr17 50724036 50724224 chr17,50724036,50724241,-,L1MC5,LINE,L1,-28,9276,9055,50724008,50733295 -5 - chr17 50761036 50761348 chr17,50761036,50761348,-,AluSx,SINE,Alu,-8,304,1,50761028,50761348 +5 - chr17 50762902 50763194 chr17,50762902,50763194,-,AluSc,SINE,Alu,-17,292,3,50762885,50763196 +6 - chr17 50764706 50765036 chr17,50764706,50765064,-,L2b,LINE,L2,-8,3367,3018,50764698,50768081 +5 - chr17 50766559 50766675 chr17,50766463,50766675,+,MIRb,SINE,MIR,27,268,0,50766437,50766675 -5 + chr17 50767039 50767189 chr17,50767039,50767189,-,MIRc,SINE,MIR,-84,184,17,50766955,50767205 +6 - chr17 50867664 50867701 chr17,50867664,50867701,+,(CCTTCTC)n,Simple_repeat,Simple_repeat,1,41,0,50867664,50867701 +6 + chr17 50868293 50868307 chr17,50868293,50868333,+,(TTTG)n,Simple_repeat,Simple_repeat,1,41,0,50868293,50868333 +5 + chr17 50908678 50908807 chr17,50908617,50908807,-,MIRb,SINE,MIR,-32,230,25,50908585,50908831 -1 - chr17 50908809 50908956 chr17,50908809,50909113,-,AluSx,SINE,Alu,-7,305,1,50908802,50909113 -5 - chr17 50909953 50910184 chr17,50909952,50910184,-,MIRb,SINE,MIR,-31,237,1,50909921,50910184 +4 - chr17 50943441 50944017 chr17,50943441,50944017,+,L1ME3A,LINE,L1,5586,6173,0,50937856,50944017 -6 + chr17 50944394 50944434 chr17,50944394,50944434,+,G-rich,Low_complexity,Low_complexity,1,42,0,50944394,50944434 -6 + chr17 50947398 50947469 chr17,50947351,50947469,-,MIRb,SINE,MIR,-83,185,47,50947268,50947515 -2 - chr17 50948049 50948118 chr17,50947929,50948118,-,MIRc,SINE,MIR,-2,266,71,50947927,50948188 -2 - chr17 50948478 50948625 chr17,50948478,50948625,+,Charlie18a,DNA,hAT-Charlie,16,174,-168,50948463,50948793 +6 + chr17 50948625 50948674 chr17,50948625,50948674,+,(TGTGTGTGTC)n,Simple_repeat,Simple_repeat,1,49,0,50948625,50948674 +6 + chr17 50948674 50948750 chr17,50948674,50948753,+,Charlie18a,DNA,hAT-Charlie,175,272,-70,50948500,50948823 +5 + chr17 51084126 51084211 chr17,51084079,51084211,-,L2c,LINE,L2,0,3387,3261,51084079,51087471 -2 - chr17 51183191 51183491 chr17,51183166,51183491,-,AluSx,SINE,Alu,-6,306,1,51183160,51183491 +5 - chr17 51249579 51249624 chr17,51249303,51249624,-,L1MC4,LINE,L1,-3522,2692,2338,51245781,51251961 +5 - chr17 51249617 51249913 chr17,51249617,51249913,-,L1MC4,LINE,L1,-4014,2201,1915,51245603,51251827 +6 - chr17 51249913 51250204 chr17,51249913,51250204,-,AluJb,SINE,Alu,-31,281,1,51249882,51250204 +6 - chr17 51250204 51251296 chr17,51250204,51251296,-,L1MC4,LINE,L1,-4301,1914,649,51245903,51251944 +6 - chr17 51312609 51312784 chr17,51312509,51312812,+,AluSz,SINE,Alu,1,304,-8,51312509,51312820 -5 + chr17 51321586 51321676 chr17,51321428,51321703,+,AluJb,SINE,Alu,1,302,-10,51321428,51321713 -3 + chr17 51323668 51323732 chr17,51323668,51323770,+,MIRb,SINE,MIR,78,186,-82,51323591,51323852 -2 + chr17 51332679 51332750 chr17,51331252,51333097,-,L1P1,LINE,L1,-4313,1842,1,51326939,51333097 -1 - chr17 51333000 51333097 chr17,51331252,51333097,-,L1P1,LINE,L1,-4313,1842,1,51326939,51333097 +1 - chr17 51333800 51334026 chr17,51333800,51334026,-,MIRb,SINE,MIR,-1,267,26,51333799,51334051 -6 - chr17 51333800 51334026 chr17,51333800,51334026,-,MIRb,SINE,MIR,-1,267,26,51333799,51334051 +6 - chr17 51334043 51334090 chr17,51334043,51334247,-,LTR16A,LTR,ERVL,-11,440,233,51334032,51334479 -5 - chr17 51334043 51334118 chr17,51334043,51334247,-,LTR16A,LTR,ERVL,-11,440,233,51334032,51334479 +5 - chr17 51334350 51334384 chr17,51334350,51334384,+,(CATT)n,Simple_repeat,Simple_repeat,1,34,0,51334350,51334384 -6 + chr17 51334673 51334973 chr17,51334673,51334973,-,AluSg,SINE,Alu,-11,299,1,51334662,51334973 +6 - chr17 51335261 51335329 chr17,51334984,51335329,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,51334984,51335329 -1 - chr17 51334984 51335165 chr17,51334984,51335329,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,51334984,51335329 +1 - chr17 51336715 51336751 chr17,51336633,51336751,-,L2b,LINE,L2,-2,3385,3260,51336631,51340010 -1 - chr17 51336862 51336987 chr17,51336862,51336987,-,MIRb,SINE,MIR,-115,153,15,51336747,51337001 -6 - chr17 51337074 51337624 chr17,51337074,51337624,+,MLT2B3,LTR,ERVL,1,554,0,51337074,51337624 +6 + chr17 51339607 51339724 chr17,51339584,51339881,-,AluJb,SINE,Alu,-15,297,1,51339569,51339881 -3 - chr17 51341706 51341769 chr17,51341706,51341769,+,L2a,LINE,L2,3253,3308,-79,51338454,51341848 +6 + chr17 51341769 51342082 chr17,51341769,51342082,-,AluSq2,SINE,Alu,-2,311,1,51341767,51342082 -6 - chr17 51342082 51342172 chr17,51342082,51342172,+,L2a,LINE,L2,3309,3424,-2,51338774,51342174 +6 + chr17 51342419 51342571 chr17,51342419,51342613,-,MIRb,SINE,MIR,-15,253,20,51342404,51342632 -5 - chr17 51435427 51435552 chr17,51434884,51435552,+,LTR8,LTR,ERV1,1,690,-1,51434884,51435553 +1 + chr17 51440173 51440317 chr17,51440173,51440317,-,MIRb,SINE,MIR,-72,196,39,51440101,51440355 -6 - chr17 51444125 51445341 chr17,51444125,51445341,+,L1PREC2,LINE,L1,4802,6029,-131,51439324,51445472 +6 + chr17 51445349 51445399 chr17,51445349,51445399,-,L1PREC2,LINE,L1,-84,6084,6034,51445265,51451432 -6 - chr17 51445401 51445678 chr17,51445401,51445678,-,Tigger1,DNA,TcMar-Tigger,-478,1940,1662,51444923,51447339 -6 - chr17 51445688 51445802 chr17,51445688,51445813,+,L1PREC2,LINE,L1,6033,6160,0,51439656,51445813 +5 + chr17 51762014 51762190 chr17,51762014,51762190,-,MIR,SINE,MIR,0,268,71,51762014,51762260 +6 - chr17 51762606 51762819 chr17,51762606,51762819,-,MIRb,SINE,MIR,-23,245,17,51762583,51762835 +6 - chr17 52532532 52532594 chr17,52532290,52532833,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,52532290,52532833 +3 + chr17 52535625 52535701 chr17,52535597,52535808,+,MLT1I,LTR,ERVL-MaLR,190,386,-25,52535408,52535833 +5 + chr17 52862121 52862431 chr17,52861817,52862431,+,LTR12_,LTR,ERV1,1,688,0,52861817,52862431 +1 + chr17 52862431 52862471 chr17,52862431,52862565,+,HERV9N-int,LTR,ERV1,1,134,-5240,52862431,52867805 +4 + chr17 54956760 54957153 chr17,54956733,54957153,-,LTR72,LTR,ERV1,-69,450,4,54956664,54957156 +5 - chr17 54957792 54958426 chr17,54957792,54958448,-,L2c,LINE,L2,-1162,2257,1869,54956630,54960316 +1 - chr17 55271508 55271545 chr17,55271508,55271545,+,(TATT)n,Simple_repeat,Simple_repeat,1,37,0,55271508,55271545 -6 + chr17 55271545 55271831 chr17,55271545,55271831,-,AluSz,SINE,Alu,-28,284,1,55271517,55271831 +6 - chr17 55325827 55325926 chr17,55325827,55325926,+,MER5B,DNA,hAT-Charlie,1,102,-76,55325827,55326002 -6 + chr17 55325953 55326085 chr17,55325953,55326085,+,MIRb,SINE,MIR,41,191,-77,55325913,55326162 -6 + chr17 55326447 55326744 chr17,55326447,55326744,-,AluSc,SINE,Alu,-10,299,1,55326437,55326744 +6 - chr17 55327576 55327702 chr17,55327509,55327702,+,MLT1J1,LTR,ERVL-MaLR,22,222,-222,55327488,55327924 -4 + chr17 55327748 55327791 chr17,55327748,55328206,+,LTR32,LTR,ERVL,1,457,0,55327748,55328206 -1 + chr17 55458350 55458450 chr17,55458350,55459213,+,LTR1A2,LTR,ERV1,1,837,0,55458350,55459213 -1 + chr17 55468066 55468176 chr17,55467772,55468176,+,LTR7C,LTR,ERV1,1,471,0,55467772,55468176 -5 + chr17 55468176 55468401 chr17,55468176,55468582,+,HERVH-int,LTR,ERV1,1,446,-7267,55468176,55475849 -2 + chr17 55477055 55477172 chr17,55477048,55477207,+,AluJo,SINE,Alu,152,312,0,55476897,55477207 -3 + chr17 55857018 55857178 chr17,55856149,55857178,-,L1ME3A,LINE,L1,-2323,3823,2763,55853826,55859940 +4 - chr17 55872887 55872939 chr17,55872887,55873029,+,MLT1E3,LTR,ERVL-MaLR,483,624,0,55872405,55873029 -1 + chr17 56471142 56471238 chr17,56471005,56471238,-,MIRc,SINE,MIR,-8,260,5,56470997,56471242 -1 - chr17 56471318 56471360 chr17,56471318,56471360,+,(TCTTC)n,Simple_repeat,Simple_repeat,1,45,0,56471318,56471360 +6 + chr17 56471566 56472057 chr17,56471566,56472057,+,L1MB7,LINE,L1,5671,6165,-19,56465896,56472076 +6 + chr17 56472103 56472264 chr17,56472103,56472264,-,MER102b,DNA,hAT-Charlie,-95,246,82,56472008,56472345 -6 - chr17 56472546 56472913 chr17,56472546,56472913,-,L2c,LINE,L2,-1,3386,3019,56472545,56475931 -6 - chr17 56473050 56473191 chr17,56473050,56473191,+,L2b,LINE,L2,3230,3375,0,56469821,56473191 +6 + chr17 56473218 56473333 chr17,56473218,56473333,-,L2c,LINE,L2,-366,3021,2911,56472852,56476243 -6 - chr17 56473380 56473647 chr17,56473380,56473671,+,AluSx,SINE,Alu,1,306,-6,56473380,56473677 +5 + chr17 56940108 56940239 chr17,56940108,56940410,-,AluJb,SINE,Alu,-19,293,1,56940089,56940410 -4 - chr17 56941035 56941158 chr17,56940852,56941158,+,AluY,SINE,Alu,1,303,-8,56940852,56941166 +2 + chr17 56982749 56982820 chr17,56982704,56982820,-,Charlie15a,DNA,hAT-Charlie,-2,222,114,56982702,56982933 -1 - chr17 56983228 56983264 chr17,56983228,56983264,+,GA-rich,Low_complexity,Low_complexity,1,36,0,56983228,56983264 +6 + chr17 56983451 56983679 chr17,56983451,56983679,-,L1ME4c,LINE,L1,-209,621,397,56983242,56984075 -6 - chr17 56983905 56984217 chr17,56983905,56984217,-,AluSz,SINE,Alu,-9,303,1,56983896,56984217 -6 - chr17 56984817 56985104 chr17,56984817,56985128,+,AluJb,SINE,Alu,2,312,0,56984816,56985128 +5 + chr17 57078298 57078535 chr17,57078247,57078535,-,MLT1C,LTR,ERVL-MaLR,0,467,186,57078247,57078720 +5 - chr17 57078535 57078703 chr17,57078535,57078831,-,AluY,SINE,Alu,-16,295,1,57078519,57078831 +2 - chr17 57079147 57079283 chr17,57079103,57079283,-,MLT1C,LTR,ERVL-MaLR,-286,181,1,57078817,57079283 +5 - chr17 57092848 57093036 chr17,57092848,57093036,+,L2b,LINE,L2,2970,3153,-222,57089879,57093258 -6 + chr17 57093082 57093237 chr17,57093082,57093237,-,MER105,DNA,hAT-Charlie,-19,184,1,57093063,57093237 +6 - chr17 57093342 57093395 chr17,57093342,57093395,+,L2b,LINE,L2,3314,3372,-3,57090029,57093398 -6 + chr17 57093731 57094383 chr17,57093731,57094383,-,HAL1,LINE,L1,-53,2454,1672,57093678,57096054 +6 - chr17 57094607 57094908 chr17,57094607,57094908,-,AluJo,SINE,Alu,-6,306,2,57094601,57094909 +6 - chr17 57094915 57095001 chr17,57094915,57095001,+,HAL1,LINE,L1,539,636,-1871,57094377,57096872 -6 + chr17 57095049 57095131 chr17,57095049,57095131,+,L2,LINE,L2,327,404,-3015,57094723,57098146 -6 + chr17 57095170 57095449 chr17,57095170,57095449,-,AluJr,SINE,Alu,-21,291,8,57095149,57095456 +6 - chr17 57095464 57095488 chr17,57095464,57095488,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,57095464,57095488 -6 + chr17 57095502 57095606 chr17,57095502,57095606,+,L2b,LINE,L2,3272,3382,-5,57092231,57095611 -6 + chr17 57277925 57278223 chr17,57277925,57278223,+,AluJr,SINE,Alu,1,308,-4,57277925,57278227 +6 + chr17 57278677 57278839 chr17,57278677,57278839,-,L1PA10,LINE,L1,0,6168,6008,57278677,57284846 -6 - chr17 57279492 57279577 chr17,57279492,57279577,-,L2b,LINE,L2,-2,3373,3265,57279490,57282841 -6 - chr17 57279632 57279946 chr17,57279632,57279946,-,AluJo,SINE,Alu,0,312,1,57279632,57279946 -6 - chr17 57448812 57448989 chr17,57448812,57448989,+,MIRb,SINE,MIR,76,248,-20,57448737,57449009 +6 + chr17 57449045 57449109 chr17,57449045,57449109,-,MIRc,SINE,MIR,-194,74,11,57448851,57449119 -6 - chr17 57449746 57450058 chr17,57449746,57450058,+,AluSc5,SINE,Alu,2,309,0,57449745,57450058 +6 + chr17 57450255 57450291 chr17,57450255,57450322,+,(AAAG)n,Simple_repeat,Simple_repeat,1,67,0,57450255,57450322 +5 + chr17 57522643 57522692 chr17,57522643,57522809,-,MIR3,SINE,MIR,-34,174,3,57522609,57522811 +2 - chr17 57531841 57531927 chr17,57531841,57531927,-,L3b,LINE,CR1,-201,5031,4939,57531640,57536865 -6 - chr17 57600856 57601032 chr17,57600792,57601032,-,MIR,SINE,MIR,-2,260,6,57600790,57601037 +5 - chr17 57601782 57602000 chr17,57601782,57602000,-,MIRb,SINE,MIR,-40,228,2,57601742,57602001 +6 - chr17 57606305 57606358 chr17,57606305,57606490,-,MIR,SINE,MIR,-50,212,14,57606255,57606503 +2 - chr17 57771946 57772196 chr17,57771857,57772380,-,MLT1H,LTR,ERVL-MaLR,0,549,57,57771857,57772436 +5 - chr17 57832699 57832725 chr17,57832699,57832725,+,(TTG)n,Simple_repeat,Simple_repeat,1,26,0,57832699,57832725 -6 + chr17 57915016 57915026 chr17,57914903,57915026,-,MIRb,SINE,MIR,-19,249,124,57914884,57915149 -2 - chr17 57915016 57915139 chr17,57915013,57915235,+,L3b,LINE,CR1,4841,5053,-179,57910173,57915414 +5 + chr17 57988188 57988223 chr17,57988188,57988223,+,(GCG)n,Simple_repeat,Simple_repeat,1,35,0,57988188,57988223 +6 + chr17 57990823 57991027 chr17,57990823,57991027,+,MIRb,SINE,MIR,44,259,-3,57990780,57991030 -6 + chr17 57992473 57992508 chr17,57992473,57992508,+,A-rich,Low_complexity,Low_complexity,1,35,0,57992473,57992508 -6 + chr17 57993118 57993403 chr17,57993118,57993403,+,AluY,SINE,Alu,11,295,-16,57993108,57993419 -6 + chr17 57993996 57994108 chr17,57993996,57994108,-,L2c,LINE,L2,-15,3372,3266,57993981,57997373 +6 - chr17 58076891 58077143 chr17,58075254,58077143,+,L1MB7,LINE,L1,4260,6172,-12,58070995,58077155 -5 + chr17 58077147 58077179 chr17,58077147,58077179,+,(GT)n,Simple_repeat,Simple_repeat,1,32,0,58077147,58077179 -6 + chr17 58077191 58077241 chr17,58077191,58077241,-,Kanga2_a,DNA,TcMar-Tc2,-29,859,813,58077162,58078053 +6 - chr17 58077241 58077505 chr17,58077241,58077505,-,AluSz6,SINE,Alu,-9,303,39,58077232,58077543 +6 - chr17 58077505 58077530 chr17,58077505,58077530,-,Kanga2_a,DNA,TcMar-Tc2,-76,812,791,58077429,58078320 +6 - chr17 58078429 58078593 chr17,58078429,58078593,-,MIR3,SINE,MIR,0,208,20,58078429,58078612 +6 - chr17 58078654 58078949 chr17,58078654,58078949,-,AluSg,SINE,Alu,-15,295,1,58078639,58078949 +6 - chr17 58079515 58079890 chr17,58079515,58079890,-,L2c,LINE,L2,-16,3359,2925,58079499,58082814 +6 - chr17 58080258 58080460 chr17,58080258,58080460,-,MIR,SINE,MIR,-4,258,36,58080254,58080495 +6 - chr17 58080512 58080673 chr17,58080512,58080673,-,L2c,LINE,L2,-1046,2373,2183,58079466,58082855 +6 - chr17 58080697 58080883 chr17,58080697,58080883,-,hAT-N1_Mam,DNA,hAT-Tip100?,-16,324,116,58080681,58080998 +6 - chr17 58080890 58080993 chr17,58080890,58080993,+,MER103C,DNA,hAT-Charlie,5,105,-192,58080886,58081185 -6 + chr17 58081057 58081308 chr17,58081057,58081308,+,MIR,SINE,MIR,2,262,0,58081056,58081308 -6 + chr17 58081363 58081384 chr17,58081363,58081384,+,(AC)n,Simple_repeat,Simple_repeat,1,21,0,58081363,58081384 -6 + chr17 58081571 58081709 chr17,58081571,58081709,-,MER91A,DNA,hAT-Tip100,-1,195,53,58081570,58081761 +6 - chr17 58081716 58081761 chr17,58081716,58081761,-,MER91A,DNA,hAT-Tip100,-151,45,1,58081565,58081761 +6 - chr17 58082488 58082568 chr17,58082488,58082568,+,MIR3,SINE,MIR,110,189,-19,58082379,58082587 -6 + chr17 58095791 58096222 chr17,58095791,58096222,-,MLT2C1,LTR,ERVL,0,397,1,58095791,58096222 -6 - chr17 58096222 58097754 chr17,58096222,58097754,-,ERVL-B4-int,LTR,ERVL,-1,5713,4116,58096221,58101869 -6 - chr17 58097754 58098297 chr17,58097754,58098297,-,L1MD2,LINE,L1,-420,6112,5615,58097334,58103911 -6 - chr17 58098297 58098585 chr17,58098297,58098585,+,AluJb,SINE,Alu,1,288,-24,58098297,58098609 +6 + chr17 58098585 58098597 chr17,58098585,58098597,-,L1MD2,LINE,L1,-918,5614,5614,58097667,58104210 -6 - chr17 58098597 58098886 chr17,58098597,58098886,-,L1MA5A,LINE,L1,0,6297,5999,58098597,58104884 -6 - chr17 58098886 58099357 chr17,58098886,58099357,-,L1MD2,LINE,L1,-918,5614,5117,58097968,58104473 -6 - chr17 58099380 58099674 chr17,58099380,58099674,-,AluJr,SINE,Alu,-14,298,4,58099366,58099677 -6 - chr17 58099828 58100024 chr17,58099828,58100024,-,L1MEg,LINE,L1,-3993,2091,1891,58095835,58101914 -6 - chr17 58100024 58100313 chr17,58100024,58100313,-,AluJb,SINE,Alu,-10,302,8,58100014,58100320 -6 - chr17 58100313 58100702 chr17,58100313,58100702,-,L1MEg,LINE,L1,-4194,1890,1494,58096119,58102195 -6 - chr17 58100749 58101479 chr17,58100749,58101575,-,L1MD2,LINE,L1,-1216,5103,4262,58099533,58105836 -5 - chr17 58202375 58202621 chr17,58202375,58202621,-,L1MB7,LINE,L1,0,6184,5910,58202375,58208530 +6 - chr17 58202702 58202753 chr17,58202702,58202753,-,L2c,LINE,L2,0,3387,3336,58202702,58206088 +6 - chr17 58330930 58330968 chr17,58330930,58330968,+,(CCCTT)n,Simple_repeat,Simple_repeat,1,38,0,58330930,58330968 -6 + chr17 58331487 58331541 chr17,58331487,58331541,+,(CCCCCT)n,Simple_repeat,Simple_repeat,1,54,0,58331487,58331541 -6 + chr17 58337647 58337679 chr17,58337647,58337737,-,MIRb,SINE,MIR,-70,198,109,58337577,58337845 -4 - chr17 58353259 58353387 chr17,58353259,58353387,-,MIR,SINE,MIR,-22,246,87,58353237,58353473 -5 - chr17 58519837 58519861 chr17,58519636,58519861,-,AluY,SINE,Alu,0,311,86,58519636,58519946 -1 - chr17 58747055 58747084 chr17,58746877,58747084,+,MLT1G,LTR,ERVL-MaLR,341,569,0,58746537,58747084 +1 + chr17 58966066 58966218 chr17,58966066,58966218,-,L1ME4b,LINE,L1,-8,884,705,58966058,58966922 -6 - chr17 58966232 58966367 chr17,58966232,58966367,+,FLAM_C,SINE,Alu,1,133,-10,58966232,58966377 +6 + chr17 58966418 58966441 chr17,58966418,58966441,+,(A)n,Simple_repeat,Simple_repeat,1,23,0,58966418,58966441 +6 + chr17 59106905 59106935 chr17,59106905,59106935,+,G-rich,Low_complexity,Low_complexity,1,30,0,59106905,59106935 +6 + chr17 59107089 59107281 chr17,59107089,59107281,-,MER5A,DNA,hAT-Charlie,-4,185,1,59107085,59107281 -6 - chr17 59117924 59117982 chr17,59117769,59117982,-,L3,LINE,CR1,-2172,1927,1670,59115597,59119651 -2 - chr17 59117982 59118267 chr17,59117982,59118281,+,AluSq2,SINE,Alu,1,298,-15,59117982,59118296 +5 + chr17 59202743 59202818 chr17,59202743,59202818,-,L3,LINE,CR1,-948,3151,3083,59201795,59205900 +6 - chr17 59202829 59202900 chr17,59202829,59203046,+,AluJr,SINE,Alu,86,295,-17,59202744,59203063 -2 + chr17 59203733 59203829 chr17,59203578,59203852,+,AluSz,SINE,Alu,3,300,-12,59203576,59203864 -1 + chr17 59363138 59363170 chr17,59363138,59363170,+,(TA)n,Simple_repeat,Simple_repeat,1,32,0,59363138,59363170 +6 + chr17 59363171 59363278 chr17,59363171,59363280,-,AluJr,SINE,Alu,-195,117,7,59362976,59363286 -5 - chr17 59503018 59503094 chr17,59503018,59503195,-,ERV3-16A3_LTR,LTR,ERVL,0,480,311,59503018,59503505 +2 - chr17 59526556 59526799 chr17,59526556,59526799,-,MLT1K,LTR,ERVL-MaLR,-15,580,324,59526541,59527122 +6 - chr17 59618808 59618880 chr17,59618808,59618880,-,Alu,SINE,Alu,-6,305,234,59618802,59619113 +6 - chr17 59972835 59973104 chr17,59972703,59973147,+,MLT1D,LTR,ERVL-MaLR,10,505,0,59972694,59973147 +5 + chr17 59992888 59992979 chr17,59992715,59993236,-,L3,LINE,CR1,-1278,2821,2286,59991437,59995521 -3 - chr17 59996177 59996664 chr17,59996177,59996664,+,L1MA9,LINE,L1,5514,5927,-385,59990664,59997049 +6 + chr17 59996730 59996954 chr17,59996730,59996954,+,L1MA9,LINE,L1,5945,6173,-1,59990786,59996955 +6 + chr17 60079309 60079421 chr17,60079101,60079421,+,AluY,SINE,Alu,1,304,-7,60079101,60079428 +1 + chr17 60085995 60086126 chr17,60085995,60086174,+,MER117,DNA,hAT-Charlie,1,188,-9,60085995,60086183 -2 + chr17 60088540 60088676 chr17,60088540,60088676,+,FLAM_C,SINE,Alu,1,133,-10,60088540,60088686 +6 + chr17 60126535 60126633 chr17,60126295,60126633,-,MER2,DNA,TcMar-Tigger,0,345,1,60126295,60126633 +5 - chr17 60132436 60132512 chr17,60132374,60132518,+,MIRb,SINE,MIR,24,172,-96,60132351,60132614 -3 + chr17 60135074 60135144 chr17,60135074,60135144,-,L2,LINE,L2,-557,2862,2791,60134517,60137934 +6 - chr17 60135931 60136077 chr17,60135931,60136077,+,MIR3,SINE,MIR,20,177,-31,60135912,60136108 -6 + chr17 60526469 60526501 chr17,60526469,60526627,-,Charlie4z,DNA,hAT-Charlie,-24,143,4,60526445,60526630 -4 - chr17 60541820 60541907 chr17,60541597,60541979,+,MSTC,LTR,ERVL-MaLR,49,428,0,60541549,60541979 +3 + chr17 60548408 60548516 chr17,60548374,60548516,-,AluSx3,SINE,Alu,0,311,170,60548374,60548685 -2 - chr17 60548516 60548695 chr17,60548516,60548751,-,AluSx,SINE,Alu,-57,255,9,60548459,60548759 -4 - chr17 60550737 60550756 chr17,60550730,60550756,+,(CCG)n,Simple_repeat,Simple_repeat,1,26,0,60550730,60550756 +2 + chr17 60564547 60564627 chr17,60564478,60564668,-,LTR32,LTR,ERVL,-174,283,98,60564304,60564765 -1 - chr17 60577197 60577338 chr17,60576881,60577935,-,L1M4,LINE,L1,-6371,1146,154,60570510,60578088 -3 - chr17 61130758 61130774 chr17,61130758,61130774,+,MIRc,SINE,MIR,22,37,-231,61130737,61131005 -6 + chr17 61130774 61130891 chr17,61130774,61131074,+,AluSx1,SINE,Alu,1,301,-11,61130774,61131085 -2 + chr17 61135867 61135897 chr17,61135621,61135897,+,MER58B,DNA,hAT-Charlie,40,335,-6,61135582,61135903 -4 + chr17 61135954 61135964 chr17,61135954,61136014,+,(GCT)n,Simple_repeat,Simple_repeat,1,62,0,61135954,61136014 -1 + chr17 61361668 61361857 chr17,61361610,61362091,-,MLT2B1,LTR,ERVL,0,520,1,61361610,61362091 +5 - chr17 61367585 61367704 chr17,61367585,61367724,+,MIR3,SINE,MIR,2,153,-55,61367584,61367779 -2 + chr17 61384404 61384576 chr17,61384375,61384576,-,MIR1_Amn,SINE,MIR,-44,224,11,61384331,61384586 -2 - chr17 61395435 61395447 chr17,61395435,61395555,+,MIR3,SINE,MIR,31,150,-118,61395405,61395673 -1 + chr17 61399272 61399314 chr17,61399272,61399314,+,(CGCC)n,Simple_repeat,Simple_repeat,1,42,0,61399272,61399314 -6 + chr17 62004163 62004832 chr17,62004163,62004832,-,L2a,LINE,L2,-5,3421,2688,62004158,62007519 +6 - chr17 62004897 62005193 chr17,62004897,62005193,-,AluSx,SINE,Alu,-10,302,1,62004887,62005193 +6 - chr17 62005327 62005605 chr17,62005327,62005605,+,AluSz,SINE,Alu,5,282,-30,62005323,62005635 -6 + chr17 62005605 62005639 chr17,62005605,62005639,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,35,0,62005605,62005639 -6 + chr17 62005729 62005960 chr17,62005729,62005960,-,7SLRNA,srpRNA,srpRNA,-14,306,54,62005715,62006013 +6 - chr17 62006218 62006271 chr17,62006218,62006271,+,MER66B,LTR,ERV1,295,346,-140,62005924,62006411 -6 + chr17 62006297 62006357 chr17,62006297,62006357,+,A-rich,Low_complexity,Low_complexity,1,60,0,62006297,62006357 -6 + chr17 62006640 62006938 chr17,62006640,62006938,+,AluSz,SINE,Alu,1,294,-18,62006640,62006956 -6 + chr17 62006960 62007260 chr17,62006960,62007260,+,AluSc8,SINE,Alu,2,301,-10,62006959,62007270 -6 + chr17 62549726 62549969 chr17,62549667,62549969,-,AluSx1,SINE,Alu,-31,281,1,62549636,62549969 -1 - chr17 62549982 62550280 chr17,62549982,62550280,-,AluSx,SINE,Alu,-15,297,1,62549967,62550280 -6 - chr17 62550307 62550580 chr17,62550307,62550580,+,L2b,LINE,L2,3153,3387,0,62547155,62550580 +6 + chr17 62550580 62550656 chr17,62550580,62550656,+,MIRc,SINE,MIR,140,222,-46,62550441,62550702 +6 + chr17 62550679 62550838 chr17,62550679,62550838,+,MIR,SINE,MIR,1,169,-93,62550679,62550931 +6 + chr17 62550838 62550913 chr17,62550838,62551115,-,AluSz6,SINE,Alu,-32,280,1,62550806,62551115 -4 - chr17 62551603 62551723 chr17,62551423,62551723,+,AluY,SINE,Alu,1,300,-11,62551423,62551734 +2 + chr17 62551923 62552080 chr17,62551923,62552080,-,Chap1_Mam,DNA,hAT-Charlie,-86,256,89,62551837,62552168 -6 - chr17 62626484 62626588 chr17,62626484,62626588,-,AluJo,SINE,Alu,-196,116,1,62626288,62626588 +6 - chr17 62626681 62626784 chr17,62626681,62626784,-,MIR3,SINE,MIR,-89,119,17,62626592,62626800 +6 - chr17 62627529 62627590 chr17,62627529,62627662,+,(CCCCCT)n,Simple_repeat,Simple_repeat,1,135,0,62627529,62627662 -1 + chr17 62679403 62679451 chr17,62679257,62679451,-,MIRb,SINE,MIR,-1,261,26,62679256,62679476 +5 - chr17 62681190 62681354 chr17,62681190,62681405,+,MIRb,SINE,MIR,47,266,-2,62681144,62681407 -1 + chr17 62699402 62699704 chr17,62699402,62699704,-,AluSp,SINE,Alu,-8,305,2,62699394,62699705 -6 - chr17 62707432 62707454 chr17,62707249,62707454,+,L2c,LINE,L2,2932,3140,-247,62704318,62707701 +2 + chr17 62808780 62808831 chr17,62808780,62808831,-,MIR3,SINE,MIR,-116,92,42,62808664,62808872 -6 - chr17 62835013 62835146 chr17,62834822,62835146,+,L1MD1,LINE,L1,42,356,-6277,62834781,62841423 +2 + chr17 62835146 62835307 chr17,62835146,62835307,+,MLT1A,LTR,ERVL-MaLR,3,160,-214,62835144,62835521 +6 + chr17 62835307 62835612 chr17,62835307,62835612,+,AluSz,SINE,Alu,1,298,-14,62835307,62835626 +6 + chr17 62835612 62835822 chr17,62835612,62835822,+,MLT1A,LTR,ERVL-MaLR,161,374,0,62835452,62835822 +6 + chr17 62835822 62836371 chr17,62835822,62836393,+,L1MD1,LINE,L1,357,1049,-5584,62835466,62841977 +5 + chr17 62935402 62935453 chr17,62935397,62936087,+,HAL1M8,LINE,L1,2,734,-2257,62935396,62938344 -5 + chr17 62936774 62936865 chr17,62936751,62936883,+,FLAM_C,SINE,Alu,1,133,-10,62936751,62936893 -3 + chr17 63120689 63120806 chr17,63120533,63120841,+,AluJb,SINE,Alu,1,310,-2,63120533,63120843 -3 + chr17 63125133 63125207 chr17,63125133,63125320,+,MIR,SINE,MIR,52,256,-6,63125082,63125326 -2 + chr17 63305262 63305524 chr17,63303061,63305524,-,L1PA8,LINE,L1,-3958,2503,1,63299103,63305524 +5 - chr17 63305581 63305612 chr17,63305581,63305858,-,L2c,LINE,L2,-70,3317,3026,63305511,63308883 +2 - chr17 63320381 63320491 chr17,63319779,63320916,-,HAL1,LINE,L1,0,2507,1218,63319779,63322133 +3 - chr17 63334025 63334091 chr17,63332644,63334091,+,Tigger1,DNA,TcMar-Tigger,963,2417,-1,63331682,63334092 -4 + chr17 63334092 63334116 chr17,63334092,63334758,+,L1MC4a,LINE,L1,6665,7371,-511,63327428,63335269 -2 + chr17 63387989 63388088 chr17,63387903,63388307,-,MLT1J2,LTR,ERVL-MaLR,0,444,1,63387903,63388307 +3 - chr17 63391362 63391517 chr17,63391362,63391517,+,MIRb,SINE,MIR,32,203,-65,63391331,63391582 -6 + chr17 63391725 63391753 chr17,63391725,63392026,-,AluSx,SINE,Alu,-12,300,1,63391713,63392026 +2 - chr17 63431062 63431089 chr17,63430805,63431111,+,AluSp,SINE,Alu,2,305,-8,63430804,63431119 -1 + chr17 63455803 63455817 chr17,63455803,63457690,+,SVA_D,Retroposon,SVA,1,1381,-5,63455803,63457695 +5 + chr17 63701740 63701997 chr17,63701740,63701997,+,AluSg,SINE,Alu,9,265,-45,63701732,63702042 +6 + chr17 63973381 63973514 chr17,63973324,63973514,+,MER117,DNA,hAT-Charlie,3,197,0,63973322,63973514 -4 + chr17 63996071 63996345 chr17,63996056,63996345,-,AluSx1,SINE,Alu,-17,295,3,63996039,63996347 +5 - chr17 63996345 63996358 chr17,63996345,63996358,+,(CATATG)n,Simple_repeat,Simple_repeat,5,17,0,63996341,63996358 -6 + chr17 63996510 63996676 chr17,63996510,63996676,-,FRAM,SINE,Alu,-10,166,1,63996500,63996676 +6 - chr17 63996731 63996902 chr17,63996731,63996902,+,L2b,LINE,L2,2793,2954,-465,63993939,63997367 -6 + chr17 63998798 63998833 chr17,63998798,63998833,+,(CCA)n,Simple_repeat,Simple_repeat,1,36,0,63998798,63998833 -6 + chr17 63999315 63999446 chr17,63999315,63999446,+,L2b,LINE,L2,3242,3375,0,63996074,63999446 -6 + chr17 63999420 63999737 chr17,63999420,63999737,-,L2c,LINE,L2,-126,3261,2966,63999294,64002702 +6 - chr17 64764451 64764548 chr17,64764423,64764603,+,AluSx1,SINE,Alu,131,310,-2,64764293,64764605 -3 + chr17 64900025 64900178 chr17,64900025,64900333,-,AluSg4,SINE,Alu,-2,308,1,64900023,64900333 -4 - chr17 64900570 64900591 chr17,64900335,64900591,-,AluSp,SINE,Alu,-20,293,1,64900315,64900591 -2 - chr17 64901070 64901158 chr17,64900867,64901158,-,AluJr,SINE,Alu,-8,304,1,64900859,64901158 -2 - chr17 64909595 64909613 chr17,64909472,64909613,+,MER5B,DNA,hAT-Charlie,23,178,0,64909450,64909613 +2 + chr17 64943393 64943436 chr17,64943393,64943436,+,(AC)n,Simple_repeat,Simple_repeat,1,43,0,64943393,64943436 +6 + chr17 64944016 64944313 chr17,64944016,64944313,+,AluSc,SINE,Alu,1,301,-8,64944016,64944321 +6 + chr17 64945509 64945575 chr17,64945509,64945816,+,AluSc8,SINE,Alu,2,308,-3,64945508,64945819 +4 + chr17 64950895 64950980 chr17,64950826,64950980,+,AluSx,SINE,Alu,2,155,-157,64950825,64951137 +2 + chr17 64950981 64951054 chr17,64950981,64951466,-,BLACKJACK,DNA,hAT-Blackjack,-2322,647,75,64948659,64951540 -5 - chr17 65052033 65052133 chr17,65052033,65052133,+,MamRTE1,LINE,RTE-BovB,3678,3784,-28,65048356,65052161 +6 + chr17 65052155 65052198 chr17,65052155,65052453,-,AluSq,SINE,Alu,-15,298,1,65052140,65052453 -4 - chr17 65053127 65053308 chr17,65053127,65053445,-,Tigger4b,DNA,TcMar-Tigger,0,361,1,65053127,65053445 -5 - chr17 65100843 65100879 chr17,65100843,65100879,+,(CCCGC)n,Simple_repeat,Simple_repeat,1,36,0,65100843,65100879 +6 + chr17 65110969 65111058 chr17,65110969,65111174,-,L1MEg,LINE,L1,-2216,3930,3716,65108753,65114889 -5 - chr17 65457541 65457563 chr17,65457456,65457563,-,MER81,DNA,hAT-Blackjack,0,114,2,65457456,65457564 -1 - chr17 65458389 65458408 chr17,65458211,65458506,-,AluSz6,SINE,Alu,-18,294,1,65458193,65458506 -5 - chr17 66398069 66398214 chr17,66397984,66398214,-,MIR,SINE,MIR,-13,249,18,66397971,66398231 +5 - chr17 66414970 66415116 chr17,66414947,66415116,+,L1ME4a,LINE,L1,5944,6118,-6,66409004,66415122 -1 + chr17 66415761 66415896 chr17,66415761,66415896,+,MIR,SINE,MIR,108,262,0,66415654,66415896 -6 + chr17 66416014 66416069 chr17,66416014,66416069,+,L2b,LINE,L2,3330,3426,0,66412685,66416069 -6 + chr17 66416572 66416740 chr17,66416572,66416740,-,MIR,SINE,MIR,-44,218,25,66416528,66416764 +6 - chr17 66677125 66677379 chr17,66677073,66677379,-,AluSx,SINE,Alu,-6,306,1,66677067,66677379 -2 - chr17 66677379 66677404 chr17,66677379,66677551,+,MER58A,DNA,hAT-Charlie,50,223,-1,66677330,66677552 +5 + chr17 67019934 67020173 chr17,67019897,67020173,-,LTR33,LTR,ERVL,-14,501,213,67019883,67020385 +5 - chr17 67020196 67020271 chr17,67020196,67020291,-,LTR33,LTR,ERVL,-390,125,10,67019806,67020300 +2 - chr17 67224303 67224427 chr17,67223950,67224506,+,MLT1K,LTR,ERVL-MaLR,1,589,-6,67223950,67224512 +1 + chr17 67225287 67225392 chr17,67225151,67225392,-,MIR,SINE,MIR,0,262,8,67225151,67225399 -2 - chr17 67524481 67524742 chr17,67524474,67524743,-,Charlie5,DNA,hAT-Charlie,-85,2539,2265,67524389,67527007 -1 - chr17 67525073 67525099 chr17,67525068,67525099,-,Charlie5,DNA,hAT-Charlie,-360,2264,2235,67524708,67527333 -2 - chr17 67525279 67525422 chr17,67525279,67525453,-,MER58A,DNA,hAT-Charlie,-4,220,33,67525275,67525485 -5 - chr17 67611456 67611765 chr17,67611456,67611765,-,AluSp,SINE,Alu,-5,308,11,67611451,67611775 -6 - chr17 67612352 67612577 chr17,67612352,67612577,-,MIRc,SINE,MIR,-5,263,18,67612347,67612594 -6 - chr17 67612659 67612728 chr17,67612659,67612728,+,(TGGA)n,Simple_repeat,Simple_repeat,1,69,0,67612659,67612728 +6 + chr17 67612913 67613205 chr17,67612913,67613205,+,AluSp,SINE,Alu,1,300,-13,67612913,67613218 +6 + chr17 67613316 67613404 chr17,67613316,67613404,-,L2,LINE,L2,-1005,2414,2328,67612311,67615731 -6 - chr17 67613420 67613566 chr17,67613420,67613566,+,L1M5,LINE,L1,5685,5825,-299,67607736,67613865 +6 + chr17 67613573 67613822 chr17,67613573,67613837,+,AluSz,SINE,Alu,37,297,-15,67613537,67613852 +5 + chr17 67638685 67638826 chr17,67638685,67638826,+,MER20,DNA,hAT-Charlie,1,147,-72,67638685,67638898 +6 + chr17 67638826 67638973 chr17,67638826,67639142,+,AluJr,SINE,Alu,1,302,-10,67638826,67639152 +5 + chr17 67950888 67951039 chr17,67950888,67951108,-,AluSz,SINE,Alu,-91,221,1,67950797,67951108 +2 - chr17 67951193 67951401 chr17,67951112,67951401,-,MER21B,LTR,ERVL,-554,314,1,67950558,67951401 +4 - chr17 67955544 67955825 chr17,67955544,67955825,+,AluSx1,SINE,Alu,1,293,-19,67955544,67955844 +6 + chr17 67955862 67956022 chr17,67955862,67956022,+,AluSz6,SINE,Alu,1,162,-150,67955862,67956172 +6 + chr17 67956036 67956337 chr17,67956036,67956337,+,AluY,SINE,Alu,1,300,-11,67956036,67956348 +6 + chr17 67956337 67956608 chr17,67956337,67956608,-,AluJb,SINE,Alu,-31,281,10,67956306,67956617 -6 - chr17 67956662 67956680 chr17,67956662,67956680,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,67956662,67956680 +6 + chr17 67956681 67956983 chr17,67956681,67956983,+,AluY,SINE,Alu,1,301,-10,67956681,67956993 +6 + chr17 67957001 67957291 chr17,67957001,67957311,+,AluSp,SINE,Alu,2,311,-2,67957000,67957313 +5 + chr17 67973934 67974088 chr17,67973803,67974088,-,L1M5,LINE,L1,-1227,4919,4619,67972576,67978706 -1 - chr17 67974292 67975154 chr17,67974292,67975154,-,MER21B,LTR,ERVL,-5,863,1,67974287,67975154 -6 - chr17 67975160 67975353 chr17,67975160,67975353,-,MER113,DNA,hAT-Charlie,-29,492,275,67975131,67975627 -6 - chr17 68100552 68100615 chr17,68099099,68100615,+,LTR12C,LTR,ERV1,2,1579,0,68099098,68100615 -4 + chr17 68100619 68100708 chr17,68100619,68100902,+,AluJb,SINE,Alu,1,293,-19,68100619,68100921 -2 + chr17 68131462 68131752 chr17,68131445,68131752,+,L1MC4,LINE,L1,7321,7671,-371,68124125,68132123 +1 + chr17 68133201 68133215 chr17,68132853,68133215,-,L1MC4,LINE,L1,-44,7998,7613,68132809,68140827 -1 - chr17 68189884 68189978 chr17,68189623,68189978,+,BLACKJACK,DNA,hAT-Blackjack,91,461,-2508,68189533,68192486 +1 + chr17 68189976 68190105 chr17,68189976,68190105,+,BLACKJACK,DNA,hAT-Blackjack,516,647,-2322,68189461,68192427 +6 + chr17 68190106 68190260 chr17,68190106,68190260,-,AluSx,SINE,Alu,-157,155,2,68189949,68190261 -6 - chr17 68190519 68190753 chr17,68190519,68190753,+,THE1B,LTR,ERVL-MaLR,1,244,-120,68190519,68190873 +6 + chr17 68191293 68191337 chr17,68191293,68191337,+,A-rich,Low_complexity,Low_complexity,1,45,0,68191293,68191337 +6 + chr17 68205728 68205764 chr17,68205728,68205764,+,(GCCCCG)n,Simple_repeat,Simple_repeat,1,36,0,68205728,68205764 +6 + chr17 68205964 68205994 chr17,68205964,68205994,+,(GGC)n,Simple_repeat,Simple_repeat,1,30,0,68205964,68205994 +6 + chr17 68246919 68247053 chr17,68246919,68247053,+,FLAM_C,SINE,Alu,1,129,-14,68246919,68247067 -6 + chr17 68247053 68247360 chr17,68247053,68247360,+,AluSx1,SINE,Alu,2,307,-5,68247052,68247365 -6 + chr17 68413623 68413795 chr17,68408123,68414142,-,L1PA3,LINE,L1,0,6155,124,68408123,68414265 -1 - chr17 68413911 68414142 chr17,68408123,68414142,-,L1PA3,LINE,L1,0,6155,124,68408123,68414265 -1 - chr17 68414142 68414182 chr17,68414142,68417108,-,L1PB1,LINE,L1,-2119,4743,1647,68412023,68418754 -4 - chr17 68493639 68493670 chr17,68493596,68493891,-,AluSg,SINE,Alu,-15,295,1,68493581,68493891 -5 - chr17 68557516 68557591 chr17,68557304,68557668,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,68557304,68557668 +1 + chr17 68575069 68575184 chr17,68574763,68575260,+,MLT1D,LTR,ERVL-MaLR,1,480,-25,68574763,68575285 +3 + chr17 68591796 68591878 chr17,68591578,68592011,+,MER61B,LTR,ERV1,1,427,0,68591578,68592011 +1 + chr17 68598032 68598146 chr17,68598003,68598304,-,AluJb,SINE,Alu,-10,302,1,68597993,68598304 -3 - chr17 68658721 68658735 chr17,68658721,68658908,-,L1ME4a,LINE,L1,-66,6058,5853,68658655,68664760 -4 - chr17 68672130 68672166 chr17,68672130,68672206,-,MIR,SINE,MIR,-174,88,13,68671956,68672218 -4 - chr17 68677135 68677223 chr17,68677135,68677223,-,MIR3,SINE,MIR,-82,126,43,68677053,68677265 -5 - chr17 68677658 68677788 chr17,68677658,68677788,-,LTR88c,LTR,Gypsy?,-558,304,154,68677100,68677941 -6 - chr17 68677998 68678308 chr17,68677998,68678308,-,AluSx,SINE,Alu,0,312,1,68677998,68678308 -6 - chr17 68678971 68679262 chr17,68678971,68679262,-,AluY,SINE,Alu,-21,290,1,68678950,68679262 -6 - chr17 68750343 68750529 chr17,68750343,68750529,+,MIRb,SINE,MIR,79,267,-1,68750265,68750530 +6 + chr17 68797461 68797604 chr17,68796482,68797604,-,HERVH-int,LTR,ERV1,-6259,1454,1,68790223,68797604 +4 - chr17 68797604 68797822 chr17,68797604,68798097,-,LTR7B,LTR,ERV1,0,464,1,68797604,68798097 +1 - chr17 69004714 69004793 chr17,69000000,69005148,-,L1HS,LINE,L1,-867,5279,124,68999133,69005271 -1 - chr17 69012281 69012353 chr17,69012281,69012384,-,MIRc,SINE,MIR,-125,143,37,69012156,69012420 -4 - chr17 69232963 69233942 chr17,69231290,69233942,-,L1M1,LINE,L1,-3013,4549,1776,69228277,69235717 +5 - chr17 69233960 69234714 chr17,69233960,69234714,-,L1M3a,LINE,L1,-5164,791,2,69228796,69234715 +6 - chr17 69433159 69433329 chr17,69433159,69433329,-,MIR3,SINE,MIR,-7,201,23,69433152,69433351 -6 - chr17 69433544 69433664 chr17,69433544,69433664,-,L2c,LINE,L2,0,3387,3268,69433544,69436931 -6 - chr17 69433724 69433913 chr17,69433724,69433913,-,L2c,LINE,L2,-264,3123,2919,69433460,69436831 -6 - chr17 69434801 69434866 chr17,69434801,69434866,+,MIR3,SINE,MIR,75,139,-69,69434727,69434935 +6 + chr17 69435255 69435533 chr17,69435255,69435559,+,AluSx4,SINE,Alu,1,306,-4,69435255,69435563 +5 + chr17 69477139 69477550 chr17,69477110,69477609,-,LTR16E2,LTR,ERVL,-19,549,1,69477091,69477609 +5 - chr17 69624715 69624752 chr17,69624715,69624786,+,L2c,LINE,L2,3269,3344,-43,69621447,69624829 +5 + chr17 69625506 69625963 chr17,69625430,69625963,-,MLT1F2,LTR,ERVL-MaLR,0,560,5,69625430,69625967 -2 - chr17 69626540 69626567 chr17,69626540,69626567,+,(TTAA)n,Simple_repeat,Simple_repeat,1,27,0,69626540,69626567 +6 + chr17 69626568 69626856 chr17,69626568,69626856,-,AluJr,SINE,Alu,-25,287,2,69626543,69626857 -6 - chr17 69627003 69627048 chr17,69627003,69627048,+,L1MB7,LINE,L1,4865,4905,-1241,69622139,69628289 +6 + chr17 69627048 69627360 chr17,69627048,69627360,+,AluY,SINE,Alu,3,308,-3,69627046,69627363 +6 + chr17 69627360 69628064 chr17,69627360,69628064,+,L1MB7,LINE,L1,4906,5606,-578,69622455,69628642 +6 + chr17 69628064 69628351 chr17,69628064,69628353,+,AluSz,SINE,Alu,1,299,-13,69628064,69628366 +5 + chr17 69763677 69763891 chr17,69763476,69763891,+,Helitron3Na_Mam,RC,Helitron,33,486,0,69763444,69763891 +1 + chr17 69846314 69846545 chr17,69846106,69846574,+,MLT1H,LTR,ERVL-MaLR,22,533,-16,69846085,69846590 +5 + chr17 69902742 69902757 chr17,69902522,69902757,-,MIRb,SINE,MIR,-1,267,2,69902521,69902758 -2 - chr17 69902930 69903000 chr17,69902930,69903009,-,MER102b,DNA,hAT-Charlie,-260,81,1,69902670,69903009 -5 - chr17 69964382 69964552 chr17,69964295,69964807,-,MLT1D,LTR,ERVL-MaLR,0,505,3,69964295,69964809 -3 - chr17 69983385 69983538 chr17,69983175,69983579,+,MLT1B,LTR,ERVL-MaLR,1,383,-7,69983175,69983586 +5 + chr17 70018111 70018207 chr17,70018111,70018633,-,LTR16E2,LTR,ERVL,-2,566,15,70018109,70018647 +5 - chr17 70018531 70018591 chr17,70018111,70018633,-,LTR16E2,LTR,ERVL,-2,566,15,70018109,70018647 +5 - chr17 70022079 70022149 chr17,70021963,70022149,+,MIR3,SINE,MIR,12,202,-6,70021952,70022155 -4 + chr17 70053299 70053385 chr17,70051807,70053385,-,L1MC1,LINE,L1,0,6508,5346,70051807,70058730 +4 - chr17 70053395 70053480 chr17,70053395,70054106,-,LTR8,LTR,ERV1,-16,675,1,70053379,70054106 +2 - chr17 70053641 70053719 chr17,70053395,70054106,-,LTR8,LTR,ERV1,-16,675,1,70053379,70054106 +3 - chr17 70062211 70062328 chr17,70062176,70062356,-,AluJb,SINE,Alu,0,312,130,70062176,70062485 -3 - chr17 70067508 70067528 chr17,70067508,70067528,+,(GT)n,Simple_repeat,Simple_repeat,1,20,0,70067508,70067528 +6 + chr17 70128761 70128859 chr17,70128761,70129144,-,MER48,LTR,ERV1,-11,396,1,70128750,70129144 +1 - chr17 70168549 70168575 chr17,70168549,70168575,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,70168549,70168575 -6 + chr17 70312961 70313014 chr17,70312961,70313014,+,(TTAATT)n,Simple_repeat,Simple_repeat,1,55,0,70312961,70313014 -6 + chr17 70313288 70313322 chr17,70313288,70313322,+,(TCATTTAT)n,Simple_repeat,Simple_repeat,1,34,0,70313288,70313322 -6 + chr17 70333545 70333590 chr17,70333545,70333616,-,L2b,LINE,L2,-18,3357,3289,70333527,70336904 +2 - chr17 70368816 70368916 chr17,70368737,70369121,-,THE1C,LTR,ERVL-MaLR,-4,428,1,70368733,70369121 +1 - chr17 70779204 70779230 chr17,70779204,70780104,+,L1MA5,LINE,L1,1,945,-6264,70779204,70786368 -1 + chr17 71098614 71098801 chr17,71098614,71098801,-,MIRb,SINE,MIR,0,268,73,71098614,71098873 +6 - chr17 71098828 71099002 chr17,71098828,71099002,-,MER5A,DNA,hAT-Charlie,-1,188,1,71098827,71099002 +6 - chr17 71132390 71132457 chr17,71131111,71132457,-,L1P3,LINE,L1,-5112,1349,1,71125999,71132457 +4 - chr17 72030291 72030311 chr17,72030274,72030311,+,(ACC)n,Simple_repeat,Simple_repeat,1,38,0,72030274,72030311 +1 + chr17 72030585 72030621 chr17,72030585,72030621,+,G-rich,Low_complexity,Low_complexity,1,37,0,72030585,72030621 +6 + chr17 72034269 72034290 chr17,72034269,72034290,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,72034269,72034290 -6 + chr17 72036239 72036316 chr17,72036158,72036428,-,MLT1A0,LTR,ERVL-MaLR,0,365,102,72036158,72036529 -5 - chr17 72037045 72037104 chr17,72036884,72037104,-,MER58B,DNA,hAT-Charlie,-118,223,1,72036766,72037104 -2 - chr17 72037290 72037363 chr17,72037238,72037663,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,72037238,72037663 -5 + chr17 72038005 72038279 chr17,72037975,72038279,-,AluSc,SINE,Alu,-4,305,2,72037971,72038280 -2 - chr17 72038327 72038908 chr17,72038327,72038908,+,MLT1F2,LTR,ERVL-MaLR,4,559,-1,72038324,72038909 +5 + chr17 72038909 72039072 chr17,72038909,72039072,+,L2c,LINE,L2,3237,3382,-5,72035673,72039077 +6 + chr17 72039561 72039589 chr17,72039561,72039589,+,A-rich,Low_complexity,Low_complexity,1,28,0,72039561,72039589 +6 + chr17 72040101 72040190 chr17,72040101,72040190,+,MIRc,SINE,MIR,115,219,-49,72039987,72040239 +6 + chr17 72040203 72040439 chr17,72040203,72040439,-,MER20,DNA,hAT-Charlie,-1,218,1,72040202,72040439 -6 - chr17 72045428 72045524 chr17,72045355,72045733,-,MSTA,LTR,ERVL-MaLR,-1,427,1,72045354,72045733 +3 - chr17 72071042 72071109 chr17,72071008,72071109,+,L3,LINE,CR1,4005,4098,-1,72067004,72071110 -5 + chr17 72072770 72072842 chr17,72072770,72073188,+,L1ME4a,LINE,L1,5692,6124,0,72067079,72073188 +4 + chr17 72074889 72075013 chr17,72074889,72075013,-,MER20,DNA,hAT-Charlie,0,219,105,72074889,72075117 +6 - chr17 72080321 72080806 chr17,72080321,72080806,-,Charlie4a,DNA,hAT-Charlie,0,508,21,72080321,72080826 +6 - chr17 72080982 72081401 chr17,72080982,72081417,+,L1PA10,LINE,L1,5724,6164,-4,72075259,72081421 -2 + chr17 72081950 72081997 chr17,72081853,72081997,-,LTR33,LTR,ERVL,-286,234,88,72081567,72082084 -5 - chr17 72081921 72081997 chr17,72081853,72081997,-,LTR33,LTR,ERVL,-286,234,88,72081567,72082084 +5 - chr17 72082281 72082364 chr17,72082281,72082364,+,L2b,LINE,L2,3120,3198,-177,72079162,72082541 -6 + chr17 72085023 72085152 chr17,72085023,72085152,-,MLT1L,LTR,ERVL-MaLR,0,610,465,72085023,72085616 +6 - chr17 72085173 72085424 chr17,72085173,72085424,-,MLT1L,LTR,ERVL-MaLR,-215,395,126,72084958,72085549 +6 - chr17 72090459 72090572 chr17,72090321,72090572,+,MIR,SINE,MIR,17,268,0,72090305,72090572 -5 + chr17 72090617 72090774 chr17,72090617,72090774,-,MER96,DNA,hAT-Tip100,-1,174,1,72090616,72090774 +5 - chr17 72090785 72090914 chr17,72090785,72090914,+,Tigger12c,DNA,TcMar-Tigger,534,658,-76,72090252,72090990 -5 + chr17 72110472 72110589 chr17,72110472,72110589,+,MIRc,SINE,MIR,55,179,-89,72110418,72110678 -1 + chr17 72120783 72120793 chr17,72120783,72120831,+,(CCCG)n,Simple_repeat,Simple_repeat,1,48,0,72120783,72120831 -1 + chr17 72141386 72141552 chr17,72141353,72141552,-,MIRb,SINE,MIR,-21,247,28,72141332,72141579 +5 - chr17 72220646 72220680 chr17,72220501,72220680,+,MIRb,SINE,MIR,15,210,-58,72220487,72220738 -4 + chr17 72221389 72221409 chr17,72221389,72221409,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,72221389,72221409 -6 + chr17 72323161 72323299 chr17,72323161,72323299,-,MLT1J2,LTR,ERVL-MaLR,-51,397,263,72323110,72323561 +6 - chr17 72324063 72324150 chr17,72324052,72324221,+,MIR3,SINE,MIR,36,205,-3,72324017,72324224 -5 + chr17 72324432 72324531 chr17,72324389,72324531,+,MIRc,SINE,MIR,23,182,-86,72324367,72324617 -4 + chr17 72324551 72324651 chr17,72324551,72324670,+,MIRc,SINE,MIR,27,156,-112,72324525,72324782 -2 + chr17 72343775 72343934 chr17,72343775,72343934,-,MIR3,SINE,MIR,-40,168,12,72343735,72343945 -6 - chr17 72354905 72355016 chr17,72354693,72355016,-,MLT2C2,LTR,ERVL,-35,429,76,72354658,72355091 -2 - chr17 72355028 72355060 chr17,72355028,72355060,-,L1P3,LINE,L1,-532,5640,5609,72354496,72360668 -6 - chr17 72355061 72355136 chr17,72355061,72355298,+,Tigger2,DNA,TcMar-Tigger,2478,2717,-1,72352584,72355299 +5 + chr17 72383622 72383632 chr17,72383622,72383829,-,MER58A,DNA,hAT-Charlie,-10,214,1,72383612,72383829 +2 - chr17 72384302 72384599 chr17,72384301,72384599,-,AluYm1,SINE,Alu,-11,300,1,72384290,72384599 +5 - chr17 72384599 72384746 chr17,72384599,72384746,+,MER5B,DNA,hAT-Charlie,44,178,0,72384556,72384746 -6 + chr17 72384786 72384949 chr17,72384786,72384949,+,MER5A1,DNA,hAT-Charlie,1,163,-3,72384786,72384952 -6 + chr17 72385024 72385137 chr17,72385024,72385341,+,AluJb,SINE,Alu,1,310,-2,72385024,72385343 -1 + chr17 72401304 72401421 chr17,72401171,72401438,+,AluJb,SINE,Alu,1,272,-40,72401171,72401478 -3 + chr17 72404361 72404677 chr17,72404361,72404677,-,AluJb,SINE,Alu,-9,303,2,72404352,72404678 +5 - chr17 72427972 72428056 chr17,72427868,72428056,+,MIRb,SINE,MIR,60,262,0,72427809,72428056 -5 + chr17 72428765 72428847 chr17,72428765,72428847,+,MIRb,SINE,MIR,187,268,0,72428579,72428847 +6 + chr17 72598123 72598456 chr17,72598123,72598456,+,MER2B,DNA,TcMar-Tigger,2,336,0,72598122,72598456 -6 + chr17 72603452 72603639 chr17,72603452,72603639,-,MIRc,SINE,MIR,-85,183,2,72603367,72603640 +1 - chr17 72642783 72642829 chr17,72642783,72643006,+,ERVL-B4-int,LTR,ERVL,3439,3671,-2043,72639345,72645049 +4 + chr17 72643701 72643808 chr17,72643304,72643808,+,ERVL-B4-int,LTR,ERVL,3672,4192,-1522,72639633,72645330 +2 + chr17 72643880 72643989 chr17,72643880,72643989,+,ERVL-B4-int,LTR,ERVL,4222,4364,-1290,72639659,72645279 +6 + chr17 72643994 72644069 chr17,72643994,72644069,+,ERVL-B4-int,LTR,ERVL,4489,4563,-1194,72639506,72645263 +6 + chr17 72839261 72839297 chr17,72839261,72839703,+,MLT1D,LTR,ERVL-MaLR,1,501,-4,72839261,72839707 +4 + chr17 72839354 72839703 chr17,72839261,72839703,+,MLT1D,LTR,ERVL-MaLR,1,501,-4,72839261,72839707 +2 + chr17 73243159 73243199 chr17,73243159,73243452,-,AluSp,SINE,Alu,-18,295,2,73243141,73243453 -4 - chr17 73244493 73244583 chr17,73244280,73244583,+,AluSq,SINE,Alu,1,307,-6,73244280,73244589 +2 + chr17 73513685 73513790 chr17,73512579,73514063,+,L1ME4b,LINE,L1,1,876,-16,73512579,73514079 +1 + chr17 73517075 73517178 chr17,73517075,73517178,+,L2b,LINE,L2,3267,3373,-2,73513809,73517180 +6 + chr17 73517248 73517700 chr17,73517248,73517700,+,MLT1C,LTR,ERVL-MaLR,1,467,0,73517248,73517700 +6 + chr17 73518125 73518211 chr17,73518125,73518211,+,L3,LINE,CR1,4011,4092,-7,73514115,73518218 +6 + chr17 73518242 73518453 chr17,73518242,73518453,+,MIR,SINE,MIR,28,262,0,73518215,73518453 +6 + chr17 73520208 73520283 chr17,73520208,73520283,+,L3,LINE,CR1,3102,3175,-924,73517107,73521207 +6 + chr17 73520509 73520642 chr17,73520509,73520642,-,MIR3,SINE,MIR,-41,167,30,73520468,73520671 -6 - chr17 73520801 73521036 chr17,73520801,73521036,+,L1MB5,LINE,L1,5892,6126,-48,73514910,73521084 +6 + chr17 73521036 73521327 chr17,73521036,73521327,-,AluJo,SINE,Alu,-8,304,13,73521028,73521339 -6 - chr17 73521327 73521379 chr17,73521327,73521379,+,L1MB5,LINE,L1,6127,6174,0,73515201,73521379 +6 + chr17 73641026 73641085 chr17,73640989,73641085,-,MER5A,DNA,hAT-Charlie,-75,114,8,73640914,73641092 -1 - chr17 73662568 73662879 chr17,73662518,73662879,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,73662518,73662879 +5 - chr17 73663825 73663848 chr17,73663613,73664067,+,LTR33A_,LTR,ERVL,12,528,-3,73663602,73664070 -1 + chr17 73751218 73751380 chr17,73751218,73751487,-,MER103C,DNA,hAT-Charlie,0,297,15,73751218,73751501 -4 - chr17 73755674 73755721 chr17,73755523,73755721,-,Chap1_Mam,DNA,hAT-Charlie,-132,210,8,73755391,73755728 -2 - chr17 73755755 73755900 chr17,73755755,73755900,-,MER5A1,DNA,hAT-Charlie,-5,161,16,73755750,73755915 -6 - chr17 73756310 73756424 chr17,73756222,73756424,-,MIR,SINE,MIR,-45,223,6,73756177,73756429 -2 - chr17 73760983 73761026 chr17,73760983,73761104,+,Tigger19a,DNA,TcMar-Tigger,77,209,-114,73760907,73761218 -5 + chr17 73790052 73790174 chr17,73790015,73790251,-,MIRb,SINE,MIR,-2,260,5,73790013,73790255 -3 - chr17 73799421 73799537 chr17,73799421,73799537,-,L3,LINE,CR1,-10,4089,3962,73799411,73803498 -6 - chr17 73823735 73823825 chr17,73823735,73823936,+,MER20,DNA,hAT-Charlie,18,216,-3,73823718,73823939 -2 + chr17 73828448 73828520 chr17,73828409,73828818,-,L1MB4,LINE,L1,-1,6179,5751,73828408,73834568 +1 - chr17 73834876 73834972 chr17,73834876,73834972,+,MIRb,SINE,MIR,124,227,-41,73834753,73835013 -6 + chr17 73835137 73835210 chr17,73835137,73835374,+,MIR,SINE,MIR,2,260,-2,73835136,73835376 -2 + chr17 73894749 73894883 chr17,73894694,73894883,-,MLT1L,LTR,ERVL-MaLR,-6,604,419,73894688,73895301 +5 - chr17 73895001 73895042 chr17,73895001,73895525,-,L1MD3,LINE,L1,-8,7987,7402,73894993,73902926 +2 - chr17 73911812 73911878 chr17,73911812,73911891,+,L2a,LINE,L2,3279,3407,-19,73908534,73911910 -1 + chr17 74064357 74064414 chr17,74064094,74064500,+,MSTB,LTR,ERVL-MaLR,1,426,0,74064094,74064500 -5 + chr17 74091022 74091176 chr17,74090933,74091336,-,MLT1J2,LTR,ERVL-MaLR,0,448,63,74090933,74091398 +3 - chr17 74112646 74112899 chr17,74112609,74113873,-,LTR12E,LTR,ERV1,0,1322,1,74112609,74113873 +1 - chr17 74209985 74210242 chr17,74209985,74210242,-,AluSg,SINE,Alu,-10,300,3,74209975,74210244 +6 - chr17 74210434 74210552 chr17,74210434,74210552,+,MIRb,SINE,MIR,73,198,-70,74210362,74210622 -6 + chr17 74212763 74212850 chr17,74212763,74212850,+,L2a,LINE,L2,3323,3419,-7,74209441,74212857 -6 + chr17 74212918 74213159 chr17,74212918,74213159,+,L2c,LINE,L2,3119,3387,0,74209800,74213159 -6 + chr17 74256896 74256948 chr17,74256643,74256948,-,AluSz6,SINE,Alu,-6,306,1,74256637,74256948 +5 - chr17 74256962 74256976 chr17,74256962,74257220,+,Tigger19a,DNA,TcMar-Tigger,60,321,-2,74256903,74257222 -2 + chr17 74604441 74604927 chr17,74604441,74604927,-,MLT1D,LTR,ERVL-MaLR,-8,497,1,74604433,74604927 -6 - chr17 74605190 74605233 chr17,74605190,74605233,+,(CTCCCTG)n,Simple_repeat,Simple_repeat,1,43,0,74605190,74605233 +6 + chr17 74606080 74606196 chr17,74606080,74606196,+,AluJo,SINE,Alu,1,116,-196,74606080,74606392 +6 + chr17 74672718 74672866 chr17,74672718,74672866,+,MER5A1,DNA,hAT-Charlie,10,163,-3,74672709,74672869 -6 + chr17 74974568 74974680 chr17,74974389,74974680,-,AluJr,SINE,Alu,-26,286,1,74974363,74974680 -2 - chr17 74975166 74975448 chr17,74975142,74975448,-,AluJb,SINE,Alu,-1,311,1,74975141,74975448 -2 - chr17 74975451 74975523 chr17,74975451,74975523,+,GA-rich,Low_complexity,Low_complexity,1,77,0,74975451,74975523 +6 + chr17 75131945 75132101 chr17,75131945,75132101,+,Charlie2a,DNA,hAT-Charlie,182,369,-2492,75131764,75134593 +6 + chr17 75132123 75132436 chr17,75132123,75132436,-,AluSx1,SINE,Alu,-2,310,1,75132121,75132436 -6 - chr17 75132445 75132520 chr17,75132445,75132520,+,LTR8B,LTR,ERV1,746,820,0,75131700,75132520 +6 + chr17 75132728 75133029 chr17,75132728,75133029,+,AluSp,SINE,Alu,1,307,-6,75132728,75133035 +6 + chr17 75138416 75138528 chr17,75138410,75138707,-,AluSx1,SINE,Alu,-14,298,1,75138396,75138707 +5 - chr17 75141064 75141120 chr17,75140809,75141120,+,AluSg4,SINE,Alu,1,310,0,75140809,75141120 -4 + chr17 75141120 75141281 chr17,75141120,75141281,+,AluJb,SINE,Alu,136,296,-16,75140985,75141297 -6 + chr17 75145673 75145767 chr17,75145673,75145767,+,HY1,scRNA,scRNA,13,118,-1,75145661,75145768 -6 + chr17 75145794 75145882 chr17,75145794,75146087,+,AluJb,SINE,Alu,2,292,-20,75145793,75146107 -2 + chr17 75273672 75273743 chr17,75273672,75273743,+,L2b,LINE,L2,3300,3375,0,75270373,75273743 +5 + chr17 75273760 75273895 chr17,75273760,75274060,-,AluSx,SINE,Alu,-12,300,2,75273748,75274061 -5 - chr17 75344405 75344437 chr17,75344392,75344693,-,AluSq2,SINE,Alu,-13,300,1,75344379,75344693 -1 - chr17 75371027 75371151 chr17,75371027,75371151,+,AluJo,SINE,Alu,1,124,-188,75371027,75371339 -6 + chr17 75372597 75372775 chr17,75372597,75372775,+,MER3,DNA,hAT-Charlie,1,209,0,75372597,75372775 -6 + chr17 75372958 75373257 chr17,75372958,75373257,+,AluSx1,SINE,Alu,1,297,-15,75372958,75373272 -6 + chr17 75818991 75819051 chr17,75818991,75819051,-,Zaphod2,DNA,hAT-Tip100,-1,3523,3464,75818990,75822514 +6 - chr17 75819175 75819230 chr17,75819175,75819292,-,L2b,LINE,L2,-5,3370,3250,75819170,75822541 +2 - chr17 75878097 75878138 chr17,75878097,75878138,+,(AGGC)n,Simple_repeat,Simple_repeat,1,43,0,75878097,75878138 +6 + chr17 75878220 75878305 chr17,75878220,75878305,+,G-rich,Low_complexity,Low_complexity,1,86,0,75878220,75878305 +6 + chr17 75878649 75878709 chr17,75878649,75878709,+,(CCGC)n,Simple_repeat,Simple_repeat,1,62,0,75878649,75878709 +6 + chr17 75879056 75879355 chr17,75879056,75879355,-,AluSq2,SINE,Alu,-11,302,2,75879045,75879356 -6 - chr17 75879494 75879546 chr17,75879494,75879595,+,L1ME1,LINE,L1,6070,6176,-3,75873425,75879598 +5 + chr17 75897060 75897092 chr17,75897026,75897092,+,G-rich,Low_complexity,Low_complexity,1,66,0,75897026,75897092 +1 + chr17 75897517 75897646 chr17,75897517,75897646,-,LTR84a,LTR,ERVL,-12,745,622,75897505,75898267 -6 - chr17 75943948 75943993 chr17,75943948,75944249,+,AluJb,SINE,Alu,1,300,-12,75943948,75944261 +4 + chr17 76090492 76090525 chr17,76090492,76090525,+,(GGATGG)n,Simple_repeat,Simple_repeat,1,33,0,76090492,76090525 +6 + chr17 76146274 76146329 chr17,76146176,76146329,+,MIRb,SINE,MIR,38,203,-65,76146139,76146394 +2 + chr17 76147380 76147421 chr17,76147380,76147421,+,(CAC)n,Simple_repeat,Simple_repeat,1,41,0,76147380,76147421 +6 + chr17 76545668 76545784 chr17,76545547,76545784,+,MIR,SINE,MIR,6,256,-6,76545542,76545790 -5 + chr17 76549951 76550233 chr17,76549943,76550255,-,AluSz,SINE,Alu,0,312,1,76549943,76550255 -1 - chr17 76550540 76550558 chr17,76550262,76550558,-,AluSq2,SINE,Alu,-14,299,4,76550248,76550561 -2 - chr17 76550558 76550693 chr17,76550558,76550693,+,L1ME2,LINE,L1,6024,6152,-12,76544535,76550705 +6 + chr17 76550841 76551081 chr17,76550828,76551081,-,MIRb,SINE,MIR,0,268,2,76550828,76551082 +5 - chr17 76551782 76552026 chr17,76551782,76552026,+,MIR,SINE,MIR,3,261,-1,76551780,76552027 -6 + chr17 76552190 76552222 chr17,76552190,76552498,-,AluY,SINE,Alu,-8,303,1,76552182,76552498 +2 - chr17 76552837 76552882 chr17,76552581,76552882,+,AluSq2,SINE,Alu,1,301,-12,76552581,76552894 -4 + chr17 76552882 76552931 chr17,76552882,76552991,+,(TA)n,Simple_repeat,Simple_repeat,1,110,0,76552882,76552991 -1 + chr17 76557889 76558010 chr17,76557889,76558010,+,MIR,SINE,MIR,96,216,-52,76557794,76558062 +6 + chr17 76559214 76559495 chr17,76559214,76559495,-,AluSp,SINE,Alu,-11,302,1,76559203,76559495 -6 - chr17 76559503 76559616 chr17,76559503,76559616,-,MIR,SINE,MIR,-76,186,71,76559427,76559686 -6 - chr17 76559713 76560004 chr17,76559713,76560004,+,AluSq2,SINE,Alu,16,302,-11,76559698,76560015 +6 + chr17 76560005 76560085 chr17,76560005,76560085,+,MER20,DNA,hAT-Charlie,137,217,-2,76559869,76560087 +6 + chr17 76560180 76560298 chr17,76560180,76560298,-,MER5A,DNA,hAT-Charlie,-1,188,71,76560179,76560368 -6 - chr17 76560337 76560433 chr17,76560337,76560578,-,MER30,DNA,hAT-Charlie,0,230,1,76560337,76560578 -5 - chr17 76561721 76561751 chr17,76561721,76561759,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,76561721,76561759 +5 + chr17 76563482 76563531 chr17,76563482,76563531,-,MER112,DNA,hAT-Charlie,-197,64,16,76563285,76563546 -6 - chr17 76563719 76563753 chr17,76563719,76563753,-,AluSc,SINE,Alu,0,309,282,76563719,76564034 -5 - chr17 76563753 76563801 chr17,76563753,76563801,+,(TTTAT)n,Simple_repeat,Simple_repeat,1,48,0,76563753,76563801 +6 + chr17 76563801 76564058 chr17,76563801,76564058,-,AluSc,SINE,Alu,-28,281,2,76563773,76564059 -6 - chr17 76564084 76564113 chr17,76564084,76564113,-,AluSx,SINE,Alu,-4,308,286,76564080,76564398 -6 - chr17 76564113 76564146 chr17,76564113,76564146,+,(TTG)n,Simple_repeat,Simple_repeat,1,35,0,76564113,76564146 +6 + chr17 76564146 76564423 chr17,76564146,76564423,-,AluSx,SINE,Alu,-27,285,2,76564119,76564424 -6 - chr17 76564437 76564516 chr17,76564437,76564516,-,FLAM_A,SINE,Alu,-14,128,55,76564423,76564570 -6 - chr17 76564574 76564681 chr17,76564574,76564681,+,THE1B,LTR,ERVL-MaLR,195,315,-49,76564380,76564730 +6 + chr17 76570809 76571240 chr17,76570809,76571286,+,MLT1F1,LTR,ERVL-MaLR,1,569,0,76570809,76571286 +5 + chr17 76672243 76672743 chr17,76672243,76672743,+,L1MC5a,LINE,L1,56,605,-2172,76672188,76674915 +6 + chr17 76673079 76673236 chr17,76673079,76673236,-,LTR16A,LTR,ERVL,-179,272,113,76672900,76673348 -6 - chr17 76799131 76799414 chr17,76799131,76799414,-,AluSx1,SINE,Alu,-28,284,1,76799103,76799414 -6 - chr17 76799414 76799544 chr17,76799414,76799672,-,AluSz,SINE,Alu,-16,296,2,76799398,76799673 -4 - chr17 76804185 76804457 chr17,76804154,76804457,-,AluSg4,SINE,Alu,-9,301,1,76804145,76804457 -2 - chr17 76804457 76804564 chr17,76804457,76804564,+,MER41D,LTR,ERV1,458,557,0,76804000,76804564 +6 + chr17 76804996 76805308 chr17,76804996,76805308,-,AluSq2,SINE,Alu,-2,311,1,76804994,76805308 -6 - chr17 76805308 76805534 chr17,76805308,76805534,-,FRAM,SINE,Alu,-10,166,5,76805298,76805538 -6 - chr17 76805629 76805920 chr17,76805629,76805920,-,AluSp,SINE,Alu,-20,293,1,76805609,76805920 -6 - chr17 76850176 76850347 chr17,76849989,76850347,+,MLT1A0,LTR,ERVL-MaLR,2,360,-5,76849988,76850352 +1 + chr17 76856249 76856264 chr17,76856249,76856352,-,MIRc,SINE,MIR,-117,151,29,76856132,76856380 -4 - chr17 76858267 76858355 chr17,76858170,76858473,+,MER4B,LTR,ERV1,10,358,-252,76858161,76858725 +3 + chr17 76861476 76861756 chr17,76861383,76861756,-,MSTA,LTR,ERVL-MaLR,0,428,1,76861383,76861756 -2 - chr17 76953667 76953710 chr17,76953303,76953954,-,L1MC1,LINE,L1,-15,6318,5661,76953288,76959614 +1 - chr17 76957120 76957155 chr17,76957120,76957155,+,MIR3,SINE,MIR,113,147,-61,76957008,76957216 -6 + chr17 76957455 76957657 chr17,76957455,76957902,+,MLT1C,LTR,ERVL-MaLR,1,467,0,76957455,76957902 -2 + chr17 76962892 76963049 chr17,76962740,76963119,-,L2a,LINE,L2,0,3426,2949,76962740,76966067 +5 - chr17 76963948 76964143 chr17,76963948,76964408,+,LTR84b,LTR,ERVL,156,635,-126,76963793,76964534 -2 + chr17 76966601 76966806 chr17,76966601,76966806,-,L2c,LINE,L2,-32,3355,3111,76966569,76969916 +6 - chr17 76967384 76967604 chr17,76967384,76967604,+,LTR37A,LTR,ERV1,189,426,0,76967196,76967604 -6 + chr17 76967611 76967754 chr17,76967611,76967754,-,MIR,SINE,MIR,-87,175,28,76967524,76967781 +6 - chr17 76967815 76968113 chr17,76967815,76968113,-,AluJr,SINE,Alu,-20,292,2,76967795,76968114 +6 - chr17 76968299 76968597 chr17,76968299,76968597,-,AluSx,SINE,Alu,-15,297,1,76968284,76968597 +6 - chr17 76968599 76968747 chr17,76968599,76968747,-,MIR,SINE,MIR,-16,246,96,76968583,76968842 +6 - chr17 77086823 77086863 chr17,77086823,77087121,+,Tigger13a,DNA,TcMar-Tigger,122,436,-335,77086702,77087456 +4 + chr17 77089574 77089734 chr17,77089574,77089734,-,L2c,LINE,L2,-2,3385,3238,77089572,77092971 -6 - chr17 77089734 77090035 chr17,77089734,77090035,+,AluSq,SINE,Alu,2,299,-14,77089733,77090049 +6 + chr17 77090035 77090046 chr17,77090035,77090046,-,L2c,LINE,L2,-150,3237,3229,77089885,77093274 -6 - chr17 77090046 77090098 chr17,77090046,77090305,+,AluSx,SINE,Alu,1,296,-16,77090046,77090321 +5 + chr17 77093640 77093744 chr17,77093640,77093744,+,MIR1_Amn,SINE,MIR,56,165,-65,77093585,77093809 +6 + chr17 77093744 77093878 chr17,77093744,77093878,+,SVA_A,Retroposon,SVA,181,314,-1073,77093564,77094951 +5 + chr17 77093767 77093897 chr17,77093767,77093897,-,FLAM_C,SINE,Alu,-10,133,1,77093757,77093897 -6 - chr17 77094034 77094316 chr17,77094034,77094316,-,AluSq,SINE,Alu,-4,309,2,77094030,77094317 -6 - chr17 77094459 77094765 chr17,77094459,77094765,-,AluSx,SINE,Alu,-5,307,1,77094454,77094765 -6 - chr17 77257894 77258005 chr17,77257894,77258005,-,MIRb,SINE,MIR,-71,197,77,77257823,77258081 +6 - chr17 77264209 77264238 chr17,77264209,77264238,+,(CT)n,Simple_repeat,Simple_repeat,1,29,0,77264209,77264238 -6 + chr17 77264238 77264261 chr17,77264238,77264261,+,(AC)n,Simple_repeat,Simple_repeat,2,24,0,77264237,77264261 -6 + chr17 77264262 77264416 chr17,77264262,77264416,-,Charlie18a,DNA,hAT-Charlie,-177,165,5,77264085,77264420 +6 - chr17 77264475 77264510 chr17,77264475,77264510,+,G-rich,Low_complexity,Low_complexity,1,35,0,77264475,77264510 -6 + chr17 77264520 77264697 chr17,77264520,77264697,+,MER53,DNA,hAT,3,192,-1,77264518,77264698 -6 + chr17 77273784 77273843 chr17,77273641,77273843,+,MLT1E1,LTR,ERVL-MaLR,430,653,-1,77273212,77273844 -5 + chr17 77374836 77374869 chr17,77374836,77374869,+,GA-rich,Low_complexity,Low_complexity,1,33,0,77374836,77374869 -6 + chr17 77444704 77445002 chr17,77444674,77445002,-,L2,LINE,L2,-1317,2102,1748,77443357,77446749 -1 - chr17 77445525 77445558 chr17,77445525,77445558,+,(GT)n,Simple_repeat,Simple_repeat,1,33,0,77445525,77445558 +6 + chr17 77446094 77446360 chr17,77446094,77446360,-,MLT1D,LTR,ERVL-MaLR,-3,502,192,77446091,77446551 -6 - chr17 77446360 77446650 chr17,77446360,77446650,-,AluSx,SINE,Alu,-12,300,1,77446348,77446650 -6 - chr17 77446650 77446760 chr17,77446650,77446760,-,MLT1D,LTR,ERVL-MaLR,-314,191,63,77446336,77446822 -6 - chr17 77446905 77447113 chr17,77446905,77447113,-,L1MB5,LINE,L1,0,6174,5946,77446905,77453058 -6 - chr17 77469068 77469398 chr17,77468790,77469398,-,L2,LINE,L2,-723,2696,2051,77468067,77471448 -5 - chr17 77469162 77469398 chr17,77468790,77469398,-,L2,LINE,L2,-723,2696,2051,77468067,77471448 +5 - chr17 77528401 77528441 chr17,77528401,77528441,+,(CCTCC)n,Simple_repeat,Simple_repeat,1,42,0,77528401,77528441 +6 + chr17 77528732 77528768 chr17,77528732,77528768,+,G-rich,Low_complexity,Low_complexity,1,37,0,77528732,77528768 +6 + chr17 77529115 77529145 chr17,77529115,77529145,+,(GCTGG)n,Simple_repeat,Simple_repeat,1,30,0,77529115,77529145 +6 + chr17 77529832 77529888 chr17,77529832,77529888,+,MLT1B,LTR,ERVL-MaLR,1,55,-335,77529832,77530223 +6 + chr17 77529888 77530202 chr17,77529888,77530202,+,AluSq2,SINE,Alu,1,313,0,77529888,77530202 +6 + chr17 77530202 77530258 chr17,77530202,77530258,+,MLT1B,LTR,ERVL-MaLR,56,94,-296,77530147,77530554 +6 + chr17 77530277 77530628 chr17,77530277,77530628,-,MER1A,DNA,hAT-Charlie,-3,526,177,77530274,77530804 -6 - chr17 77530627 77530685 chr17,77530627,77530685,-,MER1A,DNA,hAT-Charlie,-471,58,1,77530156,77530685 -6 - chr17 77530686 77530840 chr17,77530686,77530840,+,MLT1B,LTR,ERVL-MaLR,235,390,0,77530452,77530840 +6 + chr17 77533098 77533266 chr17,77533008,77533288,-,AluSx4,SINE,Alu,-25,285,1,77532983,77533288 -3 - chr17 77534455 77534492 chr17,77534153,77534492,+,THE1B,LTR,ERVL-MaLR,1,358,-6,77534153,77534498 +2 + chr17 77536283 77536592 chr17,77536283,77536719,+,Charlie4a,DNA,hAT-Charlie,18,508,0,77536266,77536719 +5 + chr17 77547971 77547994 chr17,77547717,77548087,-,AluSc8,SINE,Alu,-19,292,1,77547698,77548087 -5 - chr17 77558387 77558439 chr17,77558387,77558439,-,MIR,SINE,MIR,-188,74,21,77558199,77558459 -6 - chr17 77558750 77558800 chr17,77558750,77558800,+,(AGT)n,Simple_repeat,Simple_repeat,1,50,0,77558750,77558800 +6 + chr17 77558872 77559047 chr17,77558872,77559047,-,MIR,SINE,MIR,-77,185,1,77558795,77559047 -6 - chr17 77559909 77560008 chr17,77559909,77560008,+,L2c,LINE,L2,3278,3383,-4,77556632,77560012 +6 + chr17 77560185 77560285 chr17,77560185,77560285,+,L2a,LINE,L2,3300,3406,-20,77556886,77560305 +6 + chr17 77563106 77563167 chr17,77563106,77563167,+,MER5A1,DNA,hAT-Charlie,102,162,-4,77563005,77563171 +6 + chr17 77563172 77563243 chr17,77563172,77563251,-,MIR3,SINE,MIR,-49,159,62,77563123,77563312 -5 - chr17 77563548 77563753 chr17,77563548,77563753,-,MER63A,DNA,hAT-Blackjack,-1,209,3,77563547,77563755 +6 - chr17 77564681 77564794 chr17,77564681,77564794,-,MIRb,SINE,MIR,-61,207,91,77564620,77564884 +6 - chr17 77564898 77564944 chr17,77564898,77565194,+,AluSq2,SINE,Alu,1,294,-19,77564898,77565213 -2 + chr17 77568506 77568568 chr17,77568264,77568568,-,AluSp,SINE,Alu,-2,311,7,77568262,77568574 +4 - chr17 77568568 77568695 chr17,77568568,77569010,+,L1MB5,LINE,L1,5659,6113,-61,77562910,77569071 -1 + chr17 77571418 77571429 chr17,77571395,77571429,+,(GGGAG)n,Simple_repeat,Simple_repeat,1,34,0,77571395,77571429 +1 + chr17 77722872 77722953 chr17,77722576,77722953,+,Tigger2,DNA,TcMar-Tigger,2256,2648,-70,77720321,77723023 -5 + chr17 77722967 77723152 chr17,77722967,77723152,+,MIRb,SINE,MIR,34,246,-22,77722934,77723174 -6 + chr17 77723861 77723959 chr17,77723861,77723959,-,MIR1_Amn,SINE,MIR,-130,100,2,77723731,77723960 +6 - chr17 77879027 77879143 chr17,77878813,77879143,-,AluJo,SINE,Alu,-29,283,1,77878784,77879143 +5 - chr17 77879324 77879356 chr17,77879324,77879356,+,(GGTAGG)n,Simple_repeat,Simple_repeat,1,33,0,77879324,77879356 -6 + chr17 77879621 77879684 chr17,77879621,77879684,-,L2a,LINE,L2,-1,3425,3361,77879620,77883044 +6 - chr17 77880699 77880740 chr17,77880699,77880740,+,(GAGGCAGG)n,Simple_repeat,Simple_repeat,1,41,0,77880699,77880740 -6 + chr17 77880843 77880931 chr17,77880843,77880931,+,MIR,SINE,MIR,13,90,-172,77880831,77881103 -6 + chr17 77880949 77881043 chr17,77880949,77881043,+,MIRb,SINE,MIR,144,244,-24,77880806,77881067 -6 + chr17 77881315 77881348 chr17,77881315,77881348,-,MER91C,DNA,hAT-Tip100,-32,108,75,77881283,77881422 +6 - chr17 77882015 77882053 chr17,77882015,77882053,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,77882015,77882053 -6 + chr17 77883514 77883538 chr17,77883514,77883590,+,MIRb,SINE,MIR,116,193,-75,77883399,77883665 -2 + chr17 77883922 77884033 chr17,77883798,77884033,+,L2c,LINE,L2,3128,3370,-17,77880671,77884050 -4 + chr17 78108552 78108674 chr17,78108552,78108674,-,L2c,LINE,L2,-232,3155,3024,78108320,78111697 +6 - chr17 78108844 78109082 chr17,78108844,78109082,-,AluJb,SINE,Alu,-12,300,70,78108832,78109151 +6 - chr17 78109111 78109140 chr17,78109111,78109140,+,(TTG)n,Simple_repeat,Simple_repeat,1,30,0,78109111,78109140 -6 + chr17 78109514 78109634 chr17,78109514,78109634,+,FRAM,SINE,Alu,31,152,-24,78109484,78109658 -6 + chr17 78109723 78109784 chr17,78109723,78109784,+,MER5B,DNA,hAT-Charlie,1,57,-121,78109723,78109905 -6 + chr17 78109784 78110083 chr17,78109784,78110083,+,AluSp,SINE,Alu,1,300,-13,78109784,78110096 -6 + chr17 78110083 78110163 chr17,78110083,78110163,+,MER5B,DNA,hAT-Charlie,58,123,-55,78110026,78110218 -6 + chr17 78110164 78110229 chr17,78110164,78110229,-,AluJr4,SINE,Alu,-16,296,234,78110148,78110462 +6 - chr17 78110229 78110467 chr17,78110229,78110467,+,AluSz,SINE,Alu,4,278,-34,78110226,78110501 -1 + chr17 78110467 78110562 chr17,78110467,78110562,-,AluJr4,SINE,Alu,-79,233,137,78110388,78110698 +6 - chr17 78110562 78110624 chr17,78110562,78110624,+,MER5B,DNA,hAT-Charlie,114,175,-3,78110449,78110627 -6 + chr17 78110983 78111251 chr17,78110983,78111251,-,MLT2C1,LTR,ERVL,-119,278,1,78110864,78111251 +6 - chr17 78261349 78261658 chr17,78261342,78261658,-,AluY,SINE,Alu,0,311,1,78261342,78261658 +5 - chr17 78261658 78261724 chr17,78261658,78261724,-,L1ME3B,LINE,L1,-851,5391,5322,78260807,78267045 +6 - chr17 78261800 78261913 chr17,78261800,78262100,+,AluSx3,SINE,Alu,1,300,-11,78261800,78262111 -2 + chr17 78263247 78263271 chr17,78263210,78263271,+,(TGCCTCC)n,Simple_repeat,Simple_repeat,1,62,0,78263210,78263271 -4 + chr17 78266213 78266233 chr17,78266213,78266301,-,MIRb,SINE,MIR,-105,163,57,78266108,78266357 +2 - chr17 78269840 78269945 chr17,78269840,78269977,+,MIR1_Amn,SINE,MIR,23,171,-59,78269818,78270036 -2 + chr17 78270801 78270846 chr17,78270801,78270848,-,MIR,SINE,MIR,-37,225,180,78270764,78271027 +2 - chr17 78271252 78271302 chr17,78271001,78271302,-,AluSx,SINE,Alu,-11,301,1,78270990,78271302 +4 - chr17 78271858 78271967 chr17,78271858,78272036,+,LTR33,LTR,ERVL,33,214,-301,78271826,78272337 -2 + chr17 78344218 78344357 chr17,78344218,78344519,+,AluSx1,SINE,Alu,3,304,-8,78344216,78344527 +5 + chr17 78347357 78347429 chr17,78347137,78347429,-,AluSx,SINE,Alu,-1,311,18,78347136,78347446 -2 - chr17 78368793 78368893 chr17,78368793,78369103,+,AluSx,SINE,Alu,2,312,0,78368792,78369103 +4 + chr17 78373775 78373911 chr17,78373753,78374053,-,AluSc8,SINE,Alu,-12,299,1,78373741,78374053 -5 - chr17 78489421 78489574 chr17,78489421,78489779,+,L2b,LINE,L2,1922,2319,-1100,78487500,78490879 +4 + chr17 78493087 78493150 chr17,78492855,78493150,-,AluSq2,SINE,Alu,-17,296,1,78492838,78493150 -2 - chr17 78496653 78496666 chr17,78496366,78496666,-,L1MD1,LINE,L1,-53,6189,5892,78496313,78502557 -1 - chr17 78496666 78496971 chr17,78496666,78496971,-,AluY,SINE,Alu,-7,304,1,78496659,78496971 -6 - chr17 78496971 78497036 chr17,78496971,78497077,-,L1MD1,LINE,L1,-351,5891,5795,78496620,78502871 -4 - chr17 78500514 78500795 chr17,78500514,78500795,-,AluSx1,SINE,Alu,-18,294,14,78500496,78500808 -6 - chr17 78500975 78501088 chr17,78500975,78501088,-,MIRb,SINE,MIR,-146,122,22,78500829,78501109 -6 - chr17 78617389 78617432 chr17,78617387,78617432,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,45,0,78617387,78617432 -5 + chr17 78618762 78618843 chr17,78618143,78618843,-,MER50,LTR,ERV1,-23,711,1,78618120,78618843 +5 - chr17 78627918 78628035 chr17,78627776,78628072,+,AluJr,SINE,Alu,1,312,0,78627776,78628072 -3 + chr17 78630329 78630430 chr17,78630329,78630716,+,MLT1C,LTR,ERVL-MaLR,61,465,-2,78630269,78630718 -2 + chr17 78631949 78632006 chr17,78631878,78632006,+,MLT1C,LTR,ERVL-MaLR,288,419,-48,78631591,78632054 -4 + chr17 78632006 78632057 chr17,78632006,78632221,+,MER1A,DNA,hAT-Charlie,1,238,-291,78632006,78632512 -1 + chr17 78898040 78898129 chr17,78898040,78898129,-,MIR,SINE,MIR,-59,149,45,78897981,78898173 -6 - chr17 78898174 78898365 chr17,78898174,78898365,-,MIR,SINE,MIR,-54,208,16,78898120,78898380 -6 - chr17 78898668 78898727 chr17,78898668,78898727,-,MER5A1,DNA,hAT-Charlie,-40,126,66,78898628,78898792 -6 - chr17 78898727 78899034 chr17,78898727,78899034,-,AluSz,SINE,Alu,-2,310,4,78898725,78899037 -6 - chr17 78899083 78899159 chr17,78899083,78899159,-,MER5A1,DNA,hAT-Charlie,-109,80,6,78898974,78899164 -6 - chr17 78899399 78899528 chr17,78899399,78899528,+,MER5A,DNA,hAT-Charlie,1,130,-59,78899399,78899587 +6 + chr17 78904117 78904231 chr17,78903925,78904231,-,AluSz6,SINE,Alu,-14,298,1,78903911,78904231 -2 - chr17 78904629 78904861 chr17,78904629,78904861,+,MLT2B2,LTR,ERVL,3,249,-266,78904627,78905127 +6 + chr17 78904861 78905024 chr17,78904861,78905158,+,AluSx,SINE,Alu,1,301,-11,78904861,78905169 +5 + chr17 79019209 79019485 chr17,79019178,79019485,-,L1ME4b,LINE,L1,-263,629,302,79018915,79019786 +5 - chr17 79136018 79136050 chr17,79135946,79136050,-,L3b,LINE,CR1,-207,5025,4923,79135739,79140972 -2 - chr17 79598032 79598097 chr17,79597910,79598097,-,Tigger19b,DNA,TcMar-Tigger,-103,447,270,79597807,79598366 +5 - chr17 79598290 79598364 chr17,79598290,79598364,+,(CACATGCA)n,Simple_repeat,Simple_repeat,1,78,0,79598290,79598364 -6 + chr17 79598366 79598421 chr17,79598366,79598421,+,(CA)n,Simple_repeat,Simple_repeat,1,55,0,79598366,79598421 -6 + chr17 79600179 79600325 chr17,79600179,79600325,+,(ACATGC)n,Simple_repeat,Simple_repeat,1,156,0,79600179,79600325 -6 + chr17 79708945 79709151 chr17,79708945,79709151,+,AluJb,SINE,Alu,88,295,-17,79708858,79709168 +6 + chr17 79709151 79709465 chr17,79709151,79709465,+,AluSp,SINE,Alu,1,313,0,79709151,79709465 +6 + chr17 79710739 79711049 chr17,79710739,79711049,-,AluSx1,SINE,Alu,-3,309,1,79710736,79711049 -6 - chr17 79711056 79711341 chr17,79711056,79711341,-,AluJr,SINE,Alu,-17,295,1,79711039,79711341 -6 - chr17 79711353 79711443 chr17,79711353,79711443,+,L1MC5a,LINE,L1,1844,1932,-845,79709510,79712288 +6 + chr17 79711730 79712108 chr17,79711730,79712108,+,L1MC5a,LINE,L1,2109,2501,-276,79709622,79712384 +6 + chr17 79801951 79802003 chr17,79801841,79802003,-,MIR,SINE,MIR,-5,257,80,79801836,79802082 -2 - chr17 79802291 79802529 chr17,79802291,79802529,+,MIR,SINE,MIR,5,260,-2,79802287,79802531 +5 + chr17 79823452 79823530 chr17,79823232,79823530,-,AluYg6,SINE,Alu,-13,298,1,79823219,79823530 -1 - chr17 79823795 79823874 chr17,79823767,79823940,-,AluSx,SINE,Alu,-6,306,134,79823761,79824073 -3 - chr17 79826084 79826179 chr17,79826019,79826179,-,MIR3,SINE,MIR,-11,197,24,79826008,79826202 -2 - chr17 79827464 79827525 chr17,79827464,79827525,-,MER4-int,LTR,ERV1,-5438,1160,1102,79822026,79828626 -6 - chr17 79827600 79827663 chr17,79827600,79827663,-,MIR,SINE,MIR,0,262,199,79827600,79827861 -6 - chr17 79827685 79827704 chr17,79827685,79827722,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,79827685,79827722 +5 + chr17 79849898 79849958 chr17,79849821,79849958,-,MER45A,DNA,hAT-Tip100,-28,150,1,79849793,79849958 +4 - chr17 79916543 79916813 chr17,79916543,79916813,-,L1MB8,LINE,L1,-3,6175,5907,79916540,79922719 +6 - chr17 79917749 79917855 chr17,79917749,79917855,+,(TG)n,Simple_repeat,Simple_repeat,1,106,0,79917749,79917855 -6 + chr17 79919404 79919492 chr17,79919404,79919492,-,MIR3,SINE,MIR,-57,151,61,79919347,79919552 -6 - chr17 79919404 79919492 chr17,79919404,79919492,-,MIR3,SINE,MIR,-57,151,61,79919347,79919552 +6 - chr17 79919488 79919576 chr17,79919488,79919611,+,MIR3,SINE,MIR,14,139,-69,79919475,79919680 +4 + chr17 79919488 79919611 chr17,79919488,79919611,+,MIR3,SINE,MIR,14,139,-69,79919475,79919680 -6 + chr17 79921555 79921626 chr17,79921555,79921691,+,MIRb,SINE,MIR,70,217,-51,79921486,79921742 -2 + chr17 79922691 79922748 chr17,79922647,79922748,-,MIRb,SINE,MIR,-77,191,60,79922570,79922807 -2 - chr17 79922890 79923108 chr17,79922890,79923108,-,MIRb,SINE,MIR,-7,255,28,79922883,79923135 -6 - chr17 79923108 79923419 chr17,79923108,79923419,-,AluSx,SINE,Alu,-2,310,1,79923106,79923419 -6 - chr17 79923419 79923443 chr17,79923419,79923443,-,MIRb,SINE,MIR,-235,33,15,79923184,79923457 -6 - chr17 79923448 79923676 chr17,79923448,79923676,+,L1MB5,LINE,L1,5923,6166,-8,79917526,79923684 +6 + chr17 79923687 79923994 chr17,79923687,79923994,+,AluSx,SINE,Alu,1,305,-7,79923687,79924001 +6 + chr17 79925126 79925330 chr17,79925117,79925330,-,MIRb,SINE,MIR,0,268,55,79925117,79925384 -2 - chr17 79926308 79926386 chr17,79926308,79926386,-,Mam_R4,LINE,Dong-R4,-71,3738,3661,79926237,79930046 +6 - chr17 80025927 80025984 chr17,80025927,80025984,+,L1MC2,LINE,L1,6270,6327,-17,80019658,80026001 +6 + chr17 80025986 80026107 chr17,80025986,80026140,+,L1MC1,LINE,L1,5673,5827,-506,80020314,80026646 +5 + chr17 80147776 80148049 chr17,80147776,80148049,-,AluJb,SINE,Alu,-27,285,2,80147749,80148050 -6 - chr17 80148136 80148210 chr17,80148136,80148210,+,LTR37B,LTR,ERV1,203,274,-194,80147934,80148404 +6 + chr17 80148218 80148385 chr17,80148218,80148385,-,AluJb,SINE,Alu,-4,308,144,80148214,80148528 -6 - chr17 80148544 80148596 chr17,80148544,80148853,-,AluY,SINE,Alu,0,311,2,80148544,80148854 -5 - chr17 80149627 80149782 chr17,80149589,80149782,-,Charlie7,DNA,hAT-Charlie,-2268,344,122,80147321,80149903 -1 - chr17 80200673 80201053 chr17,80200566,80201053,-,MER1A,DNA,hAT-Charlie,0,529,1,80200566,80201053 +5 - chr17 80201304 80201385 chr17,80201304,80201385,+,MER20,DNA,hAT-Charlie,100,180,-39,80201205,80201424 -6 + chr17 80201437 80201463 chr17,80201437,80201463,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,27,0,80201437,80201463 -6 + chr17 80202658 80202841 chr17,80202658,80202841,-,MER20,DNA,hAT-Charlie,-2,217,33,80202656,80202873 +6 - chr17 80202836 80202932 chr17,80202836,80202932,+,MER81,DNA,hAT-Blackjack,18,113,-1,80202819,80202933 -6 + chr17 80202985 80203294 chr17,80202985,80203294,+,AluSx1,SINE,Alu,1,307,-5,80202985,80203299 -6 + chr17 80203419 80203521 chr17,80203419,80203521,-,MER5A1,DNA,hAT-Charlie,-61,105,1,80203358,80203521 +6 - chr17 80203563 80203638 chr17,80203563,80203638,+,MER5B,DNA,hAT-Charlie,63,137,-41,80203501,80203679 -6 + chr17 80204477 80204639 chr17,80204477,80204639,+,AluSp,SINE,Alu,137,298,-15,80204341,80204654 -6 + chr17 80204918 80204968 chr17,80204918,80204968,-,L2a,LINE,L2,-52,3374,3324,80204866,80208291 +6 - chr17 80205769 80205882 chr17,80205769,80205882,+,MIRb,SINE,MIR,27,141,-127,80205743,80206009 -6 + chr17 80316105 80316257 chr17,80316105,80316257,+,FRAM,SINE,Alu,1,152,-24,80316105,80316281 +6 + chr17 80316296 80316633 chr17,80316296,80316911,+,L1MC4,LINE,L1,7457,8041,-1,80308840,80316912 +5 + chr17 80333841 80333900 chr17,80333747,80333900,+,MIRb,SINE,MIR,84,244,-24,80333664,80333924 -5 + chr17 80340437 80340574 chr17,80340437,80340574,-,MIR1_Amn,SINE,MIR,-85,145,2,80340352,80340575 -6 - chr17 80340609 80340792 chr17,80340609,80340792,-,AluSx1,SINE,Alu,0,312,137,80340609,80340928 -6 - chr17 80340792 80341102 chr17,80340792,80341102,-,AluSc8,SINE,Alu,0,311,1,80340792,80341102 -6 - chr17 80341102 80341238 chr17,80341102,80341238,-,AluSx1,SINE,Alu,-176,136,1,80340926,80341238 -6 - chr17 80341499 80341583 chr17,80341499,80341583,+,Tigger3a,DNA,TcMar-Tigger,2,85,-263,80341498,80341846 +6 + chr17 80341583 80341769 chr17,80341583,80341769,+,AluJb,SINE,Alu,129,311,-1,80341455,80341770 +6 + chr17 80341769 80341807 chr17,80341769,80341807,+,Tigger3a,DNA,TcMar-Tigger,67,103,-245,80341703,80342052 +6 + chr17 80341807 80342058 chr17,80341807,80342097,-,AluSz,SINE,Alu,-13,299,1,80341794,80342097 -5 - chr17 80351828 80351870 chr17,80351827,80351870,+,(TATT)n,Simple_repeat,Simple_repeat,1,43,0,80351827,80351870 -5 + chr17 80351870 80352152 chr17,80351870,80352152,-,AluSc,SINE,Alu,-27,282,1,80351843,80352152 +6 - chr17 80453735 80453796 chr17,80453724,80453796,+,Tigger5b,DNA,TcMar-Tigger,1,78,-394,80453724,80454190 -5 + chr17 80453796 80453849 chr17,80453796,80453849,-,Tigger5b,DNA,TcMar-Tigger,-3,469,418,80453793,80454266 +6 - chr17 80453962 80454450 chr17,80453962,80454450,-,L2a,LINE,L2,-327,3099,2481,80453635,80456930 +6 - chr17 80463451 80463496 chr17,80463396,80463496,-,MLT1C,LTR,ERVL-MaLR,-364,103,1,80463032,80463496 +5 - chr17 80463513 80463803 chr17,80463513,80463803,-,AluJb,SINE,Alu,-21,291,1,80463492,80463803 +6 - chr17 80464766 80464964 chr17,80464766,80464964,-,MIRb,SINE,MIR,-47,221,1,80464719,80464964 +6 - chr17 80464964 80465048 chr17,80464964,80465048,+,MIR3,SINE,MIR,111,201,-7,80464854,80465055 -6 + chr17 80465268 80465365 chr17,80465268,80465365,+,L3,LINE,CR1,3892,3987,-112,80461377,80465477 -6 + chr17 80802311 80802621 chr17,80802311,80802621,+,AluSc,SINE,Alu,1,308,-1,80802311,80802622 -6 + chr17 80803230 80803330 chr17,80803230,80803330,-,MIR1_Amn,SINE,MIR,-81,187,88,80803149,80803417 +6 - chr17 80803642 80803739 chr17,80803642,80803968,-,L2b,LINE,L2,0,3375,3014,80803642,80806981 +2 - chr17 80804410 80804508 chr17,80804410,80804602,+,MER34B,LTR,ERV1,5,203,-362,80804406,80804964 -2 + chr17 80804665 80804730 chr17,80804611,80804730,-,MIRb,SINE,MIR,-110,158,40,80804501,80804769 +4 - chr17 80940418 80940450 chr17,80940123,80940450,+,MER2,DNA,TcMar-Tigger,1,343,-2,80940123,80940452 -5 + chr17 80966758 80966852 chr17,80966758,80966852,-,MLT1E2,LTR,ERVL-MaLR,-154,351,256,80966604,80967107 +6 - chr17 80966979 80967269 chr17,80966979,80967269,-,AluSx,SINE,Alu,-5,307,1,80966974,80967269 +6 - chr17 80967568 80967684 chr17,80967568,80967684,-,MIRc,SINE,MIR,-137,131,10,80967431,80967693 +6 - chr17 80968068 80968396 chr17,80968068,80968396,-,AluJo,SINE,Alu,-13,299,7,80968055,80968402 +5 - chr17 80968403 80968585 chr17,80968403,80968585,-,MLT1E2,LTR,ERVL-MaLR,-440,187,3,80967963,80968587 +6 - chr17 80969714 80969863 chr17,80969541,80969863,+,MLT1B,LTR,ERVL-MaLR,52,384,-6,80969490,80969869 -4 + chr17 80969879 80970006 chr17,80969879,80970006,+,MIRb,SINE,MIR,118,252,-16,80969762,80970022 -6 + chr17 81003335 81003484 chr17,81003174,81003484,+,AluSx,SINE,Alu,1,294,-18,81003174,81003502 +1 + chr17 81003508 81003813 chr17,81003508,81003813,-,L1ME1,LINE,L1,-54,6125,5796,81003454,81009608 -6 - chr17 81004170 81004209 chr17,81004170,81004209,+,(GCCCA)n,Simple_repeat,Simple_repeat,1,39,0,81004170,81004209 +6 + chr17 81004287 81004332 chr17,81004287,81004332,+,(GACCCCTC)n,Simple_repeat,Simple_repeat,1,48,0,81004287,81004332 +6 + chr17 81004678 81005022 chr17,81004678,81005022,-,L1MB8,LINE,L1,-6,6172,5808,81004672,81010829 -6 - chr17 81005029 81005069 chr17,81005029,81005069,+,(TG)n,Simple_repeat,Simple_repeat,1,40,0,81005029,81005069 +5 + chr17 81005070 81005132 chr17,81005070,81005228,+,AluSz,SINE,Alu,2,119,-193,81005069,81005421 +5 + chr17 81017969 81018079 chr17,81017894,81018079,+,L1MEg1,LINE,L1,219,413,-6039,81017676,81024118 -5 + chr17 81018169 81018348 chr17,81018169,81018469,+,L1MEg1,LINE,L1,584,896,-5556,81017586,81024025 -2 + chr17 81018380 81018469 chr17,81018169,81018469,+,L1MEg1,LINE,L1,584,896,-5556,81017586,81024025 -4 + chr17 81018545 81018589 chr17,81018545,81018674,-,MER58A,DNA,hAT-Charlie,-80,144,3,81018465,81018676 +2 - chr17 81029133 81029289 chr17,81029039,81029289,-,L1MC3,LINE,L1,-74,7711,7474,81028965,81036762 +5 - chr17 81029289 81029593 chr17,81029289,81029593,-,AluSg,SINE,Alu,-2,308,1,81029287,81029593 +6 - chr17 81029593 81029683 chr17,81029593,81029683,-,L1MC3,LINE,L1,-312,7473,7387,81029281,81037069 +6 - chr17 81029683 81029974 chr17,81029683,81029974,-,AluJr,SINE,Alu,-11,301,1,81029672,81029974 +5 - chr17 81029974 81030200 chr17,81029974,81030200,-,L1MC3,LINE,L1,-399,7386,7136,81029575,81037335 +6 - chr17 81030233 81030528 chr17,81030233,81030528,-,AluSq2,SINE,Alu,-17,296,1,81030216,81030528 +6 - chr17 81031429 81031454 chr17,81031429,81031454,+,(GGA)n,Simple_repeat,Simple_repeat,1,25,0,81031429,81031454 -6 + chr17 81031729 81031831 chr17,81031729,81031831,-,Tigger19b,DNA,TcMar-Tigger,-172,378,274,81031557,81032104 +6 - chr17 81034526 81034560 chr17,81034526,81034560,+,(GGCC)n,Simple_repeat,Simple_repeat,1,35,0,81034526,81034560 -6 + chr17 81230207 81230324 chr17,81230207,81230324,-,L2b,LINE,L2,-209,3166,3041,81229998,81233364 -6 - chr17 81231079 81231365 chr17,81231079,81231365,+,(CA)n,Simple_repeat,Simple_repeat,1,288,0,81231079,81231365 +6 + chr17 81264266 81264355 chr17,81264266,81264355,-,AmnSINE1,SINE,5S-Deu-L2,-441,134,51,81263825,81264405 -6 - chr17 81265098 81265401 chr17,81265098,81265405,+,AluSx,SINE,Alu,1,304,-8,81265098,81265413 +5 + chr17 81304054 81304310 chr17,81304054,81304310,+,MLT1C,LTR,ERVL-MaLR,7,275,-192,81304048,81304502 -6 + chr17 81304384 81304471 chr17,81304384,81304471,+,MLT1C,LTR,ERVL-MaLR,298,389,-1,81304087,81304472 -6 + chr17 81304806 81304854 chr17,81304806,81304854,+,(TCTGCCC)n,Simple_repeat,Simple_repeat,1,52,0,81304806,81304854 -6 + chr17 81305666 81305879 chr17,81305472,81305879,+,MLT1C,LTR,ERVL-MaLR,1,452,-15,81305472,81305894 -4 + chr17 81307630 81307788 chr17,81307570,81307788,-,AluJb,SINE,Alu,-24,288,1,81307546,81307788 +1 - chr17 81307818 81307844 chr17,81307818,81307873,+,MLT1J,LTR,ERVL-MaLR,231,285,-227,81307588,81308100 -2 + chr17 81339602 81339629 chr17,81339602,81339629,+,(CA)n,Simple_repeat,Simple_repeat,1,27,0,81339602,81339629 -6 + chr17 81362272 81362321 chr17,81362040,81362404,+,THE1B,LTR,ERVL-MaLR,1,364,0,81362040,81362404 +1 + chr17 81373968 81374172 chr17,81373968,81374172,+,L1M5,LINE,L1,4775,4999,-1147,81369194,81375319 +6 + chr17 81374172 81374214 chr17,81374172,81374481,+,AluSz6,SINE,Alu,1,309,-3,81374172,81374484 +5 + chr17 81376001 81376170 chr17,81375747,81376170,+,MLT2D,LTR,ERVL,1,414,0,81375747,81376170 -5 + chr17 81388198 81388237 chr17,81388198,81388237,+,(AGGCAGG)n,Simple_repeat,Simple_repeat,1,40,0,81388198,81388237 -6 + chr17 81395653 81395703 chr17,81395653,81395703,+,(TTTTAT)n,Simple_repeat,Simple_repeat,1,50,0,81395653,81395703 -6 + chr17 81397106 81397141 chr17,81397106,81397141,+,(GCGCG)n,Simple_repeat,Simple_repeat,1,38,0,81397106,81397141 -6 + chr17 81461665 81461683 chr17,81461582,81461683,+,(CCTCCT)n,Simple_repeat,Simple_repeat,1,103,0,81461582,81461683 -4 + chr17 81480592 81480755 chr17,81480592,81480755,+,LTR33,LTR,ERVL,54,224,-291,81480539,81481046 -6 + chr17 81480812 81480938 chr17,81480812,81480938,+,LTR33,LTR,ERVL,334,485,-30,81480479,81480968 -6 + chr17 81481104 81481131 chr17,81481104,81481131,+,(AATG)n,Simple_repeat,Simple_repeat,1,27,0,81481104,81481131 -6 + chr17 81697364 81697714 chr17,81697364,81697852,-,L1MC4a,LINE,L1,-425,7617,7009,81696939,81704860 +1 - chr17 81702127 81702427 chr17,81702127,81702427,-,AluSx1,SINE,Alu,-7,305,1,81702120,81702427 +6 - chr17 81862778 81862790 chr17,81862485,81862790,-,AluSx,SINE,Alu,-3,309,1,81862482,81862790 -1 - chr17 81862790 81862868 chr17,81862790,81862868,+,MER33,DNA,hAT-Charlie,241,317,-7,81862550,81862875 +6 + chr17 81878425 81878546 chr17,81878320,81878546,-,L1MC5a,LINE,L1,-889,1888,1667,81877431,81880212 +5 - chr17 81879008 81879353 chr17,81879008,81879735,+,L1MC4a,LINE,L1,6187,7076,-806,81872822,81880541 +5 + chr17 81879463 81879557 chr17,81879008,81879735,+,L1MC4a,LINE,L1,6187,7076,-806,81872822,81880541 +5 + chr17 81879008 81879735 chr17,81879008,81879735,+,L1MC4a,LINE,L1,6187,7076,-806,81872822,81880541 -5 + chr17 81879735 81880025 chr17,81879735,81880025,+,AluJb,SINE,Alu,1,303,-9,81879735,81880034 -6 + chr17 81880025 81880173 chr17,81880025,81880173,+,L1MC4a,LINE,L1,7077,7215,-667,81872949,81880840 -6 + chr17 81880173 81880470 chr17,81880173,81880470,+,AluSx,SINE,Alu,1,298,-14,81880173,81880484 -6 + chr17 81880470 81880707 chr17,81880470,81880707,+,L1MC4a,LINE,L1,7216,7469,-413,81873255,81881120 -6 + chr17 81880707 81881016 chr17,81880707,81881016,+,AluSx1,SINE,Alu,2,311,-1,81880706,81881017 -6 + chr17 81881016 81881106 chr17,81881016,81881112,+,L1MC4a,LINE,L1,7470,7567,-315,81873547,81881427 -1 + chr17 81930383 81930684 chr17,81930383,81930684,+,AluJo,SINE,Alu,1,309,-3,81930383,81930687 +5 + chr17 81932398 81932471 chr17,81932256,81932471,+,MLT2B4,LTR,ERVL,1,186,-370,81932256,81932841 +1 + chr17 81947138 81947211 chr17,81947004,81947211,+,MER2,DNA,TcMar-Tigger,104,343,-2,81946901,81947213 +2 + chr17 81947211 81947354 chr17,81947211,81947354,+,MER21B,LTR,ERVL,615,756,-112,81946597,81947466 +6 + chr17 81947455 81947601 chr17,81947455,81947606,+,MER21B,LTR,ERVL,719,863,-5,81946737,81947611 +5 + chr17 81965632 81965681 chr17,81965379,81965681,-,AluSq2,SINE,Alu,-11,302,5,81965368,81965685 +5 - chr17 81965709 81965837 chr17,81965709,81965837,+,FLAM_C,SINE,Alu,1,124,-19,81965709,81965856 -6 + chr17 81966082 81966220 chr17,81966082,81966220,+,MIR,SINE,MIR,114,260,-8,81965969,81966228 -6 + chr17 82035403 82035579 chr17,82035037,82035579,+,MER63C,DNA,hAT-Blackjack,3,645,-285,82035035,82035864 -5 + chr17 82038239 82038314 chr17,82038239,82038314,+,LTR13A,LTR,ERVK,1,87,-879,82038239,82039193 +6 + chr17 82038314 82038413 chr17,82038314,82038621,+,AluY,SINE,Alu,1,307,-4,82038314,82038625 +4 + chr17 82039181 82039380 chr17,82038621,82039470,+,LTR13A,LTR,ERVK,88,965,-1,82038534,82039471 +5 + chr17 82160227 82160332 chr17,82160227,82160332,+,L1M4,LINE,L1,5098,5204,-942,82155130,82161274 +6 + chr17 82160391 82160452 chr17,82160332,82160540,+,AluSx,SINE,Alu,1,189,-113,82160332,82160653 +5 + chr17 82214455 82214491 chr17,82214455,82214491,+,MIR1_Amn,SINE,MIR,115,150,-80,82214341,82214571 +6 + chr17 82214512 82214583 chr17,82214512,82214583,+,FLAM_C,SINE,Alu,1,74,-69,82214512,82214652 +6 + chr17 82214583 82214864 chr17,82214583,82214864,-,AluSz6,SINE,Alu,-30,282,1,82214553,82214864 -6 - chr17 82214886 82215038 chr17,82214886,82215038,+,AluJr,SINE,Alu,138,291,-21,82214749,82215059 +6 + chr17 82215060 82215340 chr17,82215060,82215340,+,MLT1B,LTR,ERVL-MaLR,84,380,-10,82214977,82215350 +6 + chr17 82250217 82250303 chr17,82250217,82250303,+,MER58A,DNA,hAT-Charlie,1,89,-135,82250217,82250438 +6 + chr17 82251708 82251844 chr17,82251708,82252008,+,AluY,SINE,Alu,1,296,-15,82251708,82252023 +5 + chr17 82290046 82290658 chr17,82289834,82290658,-,MER49,LTR,ERV1,0,923,96,82289834,82290753 +5 - chr17 82290658 82290949 chr17,82290658,82290949,-,AluSx1,SINE,Alu,-11,301,2,82290647,82290950 +6 - chr17 82290949 82291025 chr17,82290949,82291025,-,MER49,LTR,ERV1,-828,95,23,82290121,82291047 +6 - chr17 82291025 82291330 chr17,82291025,82291330,-,AluSx,SINE,Alu,-8,304,1,82291017,82291330 +6 - chr17 82291330 82291352 chr17,82291330,82291352,-,MER49,LTR,ERV1,-901,22,1,82290429,82291352 +6 - chr17 82293862 82294025 chr17,82293862,82294025,+,AluSx1,SINE,Alu,137,299,-13,82293726,82294038 +6 + chr17 82294222 82294347 chr17,82294222,82294347,-,L1ME2z,LINE,L1,-197,6247,6104,82294025,82300450 -6 - chr17 82294348 82294514 chr17,82294348,82294514,-,AluJo,SINE,Alu,-18,294,128,82294330,82294641 -6 - chr17 82294515 82294910 chr17,82294515,82295088,-,L1ME2z,LINE,L1,-337,6107,5483,82294178,82300570 -5 - chr17 82381110 82381194 chr17,82381102,82381194,+,L1ME4a,LINE,L1,5626,5718,-406,82375477,82381600 -5 + chr17 82382564 82382614 chr17,82382324,82382614,-,AluJb,SINE,Alu,-23,289,1,82382301,82382614 +4 - chr17 82401144 82401382 chr17,82401144,82401441,-,AluY,SINE,Alu,-13,298,1,82401131,82401441 +1 - chr17 82425584 82425682 chr17,82425584,82425682,+,L1ME3G,LINE,L1,5309,5394,-730,82420276,82426412 +6 + chr17 82425685 82425821 chr17,82425685,82425821,+,AluJb,SINE,Alu,1,136,-176,82425685,82425997 +6 + chr17 82425821 82426030 chr17,82425821,82426030,+,AluJb,SINE,Alu,1,209,-103,82425821,82426133 +6 + chr17 82426030 82426499 chr17,82426030,82426499,-,LTR46,LTR,ERV1,0,460,1,82426030,82426499 -6 - chr17 82426510 82426604 chr17,82426510,82426604,+,AluJb,SINE,Alu,216,309,-3,82426295,82426607 +6 + chr17 82426604 82426706 chr17,82426604,82426706,+,L1ME3G,LINE,L1,5392,5493,-631,82421213,82427337 +6 + chr17 82426706 82426852 chr17,82426706,82426852,+,AluSg,SINE,Alu,1,143,-167,82426706,82427019 +6 + chr17 82426852 82427153 chr17,82426852,82427153,+,AluYm1,SINE,Alu,1,299,-12,82426852,82427165 +6 + chr17 82427153 82427310 chr17,82427153,82427332,+,AluSg,SINE,Alu,144,310,0,82427010,82427332 +5 + chr17 82454273 82454413 chr17,82453200,82454457,-,SVA_A,Retroposon,SVA,-1,1386,20,82453199,82454476 +5 - chr17 82457366 82457479 chr17,82457197,82457479,-,MER72,LTR,ERV1,-4,718,435,82457193,82457913 +5 - chr17 82457486 82457548 chr17,82457486,82457784,-,MER72,LTR,ERV1,-399,323,1,82457087,82457784 +1 - chr17 82457673 82457699 chr17,82457486,82457784,-,MER72,LTR,ERV1,-399,323,1,82457087,82457784 +1 - chr17 82458440 82458457 chr17,82458440,82458457,+,(GCC)n,Simple_repeat,Simple_repeat,1,17,0,82458440,82458457 -6 + chr17 82462964 82463062 chr17,82462964,82463062,+,MER5A1,DNA,hAT-Charlie,48,146,-20,82462917,82463082 +6 + chr17 82463254 82463428 chr17,82463254,82463428,-,L2a,LINE,L2,0,3426,3199,82463254,82466626 -6 - chr17 82464062 82464101 chr17,82464062,82464101,+,(CCTGTGT)n,Simple_repeat,Simple_repeat,1,39,0,82464062,82464101 +6 + chr17 82476597 82476741 chr17,82476446,82476741,-,AluSx,SINE,Alu,-7,305,2,82476439,82476742 +5 - chr17 82476742 82477032 chr17,82476742,82477032,-,AluSq2,SINE,Alu,-25,288,1,82476717,82477032 +6 - chr17 82477037 82477138 chr17,82477037,82477199,-,AluJr,SINE,Alu,-24,288,120,82477013,82477318 +2 - chr17 82477629 82477813 chr17,82477533,82477813,-,AluJr,SINE,Alu,-33,279,1,82477500,82477813 +4 - chr17 82482671 82482782 chr17,82482671,82482793,+,FLAM_C,SINE,Alu,2,220,-82,82482670,82482875 +4 + chr17 82483305 82483332 chr17,82483035,82483332,+,AluSx,SINE,Alu,1,295,-17,82483035,82483349 +2 + chr17 82578023 82578034 chr17,82577725,82578034,-,AluSz6,SINE,Alu,0,312,4,82577725,82578037 -1 - chr17 82603719 82603737 chr17,82603719,82603737,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,82603719,82603737 -6 + chr17 82648849 82648887 chr17,82648572,82648887,+,G-rich,Low_complexity,Low_complexity,1,320,0,82648572,82648887 +1 + chr17 82650528 82650657 chr17,82650528,82650662,+,AluJr,SINE,Alu,176,303,-9,82650353,82650671 +5 + chr17 82714095 82714116 chr17,82714095,82714163,+,A-rich,Low_complexity,Low_complexity,1,71,0,82714095,82714163 -2 + chr17 82715567 82715651 chr17,82715321,82715651,-,AluSq2,SINE,Alu,-6,307,1,82715315,82715651 +4 - chr17 82715901 82716105 chr17,82715901,82716105,-,Ricksha_c,DNA,MULE-MuDR,-1142,906,684,82714759,82716788 +6 - chr17 82716093 82716169 chr17,82716093,82716169,-,Ricksha_c,DNA,MULE-MuDR,-1613,435,361,82714480,82716529 +6 - chr17 82734117 82734143 chr17,82733892,82734157,+,AluSx,SINE,Alu,24,296,-16,82733869,82734173 -1 + chr17 82745068 82745497 chr17,82744531,82745497,-,LTR5_Hs,LTR,ERVK,0,968,1,82744531,82745497 -1 - chr17 82745497 82745709 chr17,82745497,82745811,-,L1ME1,LINE,L1,-297,5882,5587,82745200,82751397 -5 - chr17 82795631 82795759 chr17,82795631,82795805,-,MLT1G,LTR,ERVL-MaLR,-15,576,390,82795616,82796194 +2 - chr17 82918282 82918372 chr17,82918015,82918372,-,L1MD2,LINE,L1,-2,6357,5987,82918013,82924358 -1 - chr17 82918506 82918630 chr17,82918506,82918630,-,L1M4,LINE,L1,-401,5783,5655,82918105,82924284 -6 - chr17 82978525 82978599 chr17,82978185,82978689,-,HAL1,LINE,L1,-682,1825,1315,82977503,82980003 -1 - chr17 82979356 82979402 chr17,82978864,82979458,+,L1MEc,LINE,L1,3043,3650,-2669,82975822,82982127 +1 + chr17 82981506 82981738 chr17,82981506,82981769,+,LTR23,LTR,ERV1,161,437,0,82981346,82981769 +5 + chr17 83104321 83104419 chr17,83104321,83104419,+,AluSz6,SINE,Alu,1,100,-212,83104321,83104631 +6 + chr17 83105921 83105955 chr17,83105921,83105955,+,(AATTTG)n,Simple_repeat,Simple_repeat,1,36,0,83105921,83105955 +6 + chr17 83105983 83106156 chr17,83105983,83106156,+,Zaphod3,DNA,hAT-Tip100,286,462,-2161,83105698,83108317 +6 + chr17 83106160 83106428 chr17,83106160,83106428,-,MER66A,LTR,ERV1,-38,440,169,83106122,83106596 -6 - chr17 83106509 83106895 chr17,83106509,83106895,+,MER97b,DNA,hAT-Tip100,459,862,-187,83106051,83107082 +6 + chr17 83177489 83177607 chr17,83177304,83177646,+,MLT1A0,LTR,ERVL-MaLR,2,365,0,83177303,83177646 +5 + chr17 83212196 83212244 chr17,83212196,83212771,+,L1MC4a,LINE,L1,5936,6537,-1458,83206261,83214229 +4 + chr17 83212368 83212547 chr17,83212196,83212771,+,L1MC4a,LINE,L1,5936,6537,-1458,83206261,83214229 +3 + chr17 83220434 83220560 chr17,83220434,83220903,-,Ricksha_0,DNA,MULE-MuDR,-1,1732,1325,83220433,83222227 -5 - chr17 83220887 83220903 chr17,83220434,83220903,-,Ricksha_0,DNA,MULE-MuDR,-1,1732,1325,83220433,83222227 -5 - chr17 83220527 83220903 chr17,83220434,83220903,-,Ricksha_0,DNA,MULE-MuDR,-1,1732,1325,83220433,83222227 +5 - chr17 83220993 83221174 chr17,83220993,83221174,+,L1M5,LINE,L1,5606,5784,-340,83215388,83221514 +5 + chr17 83220993 83221174 chr17,83220993,83221174,+,L1M5,LINE,L1,5606,5784,-340,83215388,83221514 -5 + chr17 83221549 83221723 chr17,83221549,83221723,+,MIR3,SINE,MIR,15,206,-2,83221535,83221725 -6 + chr17 83222147 83222246 chr17,83222147,83222246,+,Charlie9,DNA,hAT-Charlie,2663,2757,0,83219485,83222246 -6 + chr17 83226486 83226503 chr17,83226486,83226547,+,(GTGT)n,Simple_repeat,Simple_repeat,1,61,0,83226486,83226547 -1 + chr18 11103 11145 chr18,10631,11145,-,TAR1,Satellite,telo,-217,1894,1344,10414,12488 -1 - chr18 11505 11595 chr18,11505,11620,-,MIRb,SINE,MIR,-37,231,115,11468,11734 -4 - chr18 15617 15759 chr18,15594,15759,-,FRAM,SINE,Alu,-11,165,1,15583,15759 -2 - chr18 15759 15928 chr18,15759,16126,-,L1M4,LINE,L1,-2368,3778,3398,13391,19523 -5 - chr18 268528 268643 chr18,268528,268643,+,MIRc,SINE,MIR,127,268,0,268402,268643 +6 + chr18 268925 269111 chr18,268925,269111,+,MER49,LTR,ERV1,1,191,-732,268925,269843 +6 + chr18 269111 269408 chr18,269111,269408,+,AluSq2,SINE,Alu,1,294,-19,269111,269427 +6 + chr18 269408 270113 chr18,269408,270113,+,MER49,LTR,ERV1,192,923,0,269217,270113 +6 + chr18 316941 316986 chr18,316941,317251,+,AluSx,SINE,Alu,1,308,-4,316941,317255 +4 + chr18 316941 316963 chr18,316941,317251,+,AluSx,SINE,Alu,1,308,-4,316941,317255 -2 + chr18 317099 317251 chr18,316941,317251,+,AluSx,SINE,Alu,1,308,-4,316941,317255 -4 + chr18 423744 423772 chr18,423732,423772,+,(T)n,Simple_repeat,Simple_repeat,1,40,0,423732,423772 -5 + chr18 508785 508807 chr18,508785,508855,+,MIR3,SINE,MIR,112,184,-24,508674,508879 -2 + chr18 650348 650631 chr18,650348,650631,-,L1MB3,LINE,L1,0,6183,5897,650348,656527 -6 - chr18 650631 650711 chr18,650631,650711,-,AluJb,SINE,Alu,-3,309,230,650628,650940 -6 - chr18 650711 650917 chr18,650711,650917,-,L1MB3,LINE,L1,0,5896,5687,650711,656603 -6 - chr18 651128 651404 chr18,651128,651404,+,AluSx,SINE,Alu,1,276,-36,651128,651440 +6 + chr18 651410 651440 chr18,651410,651440,+,(AATA)n,Simple_repeat,Simple_repeat,1,30,0,651410,651440 +6 + chr18 651631 651765 chr18,651631,651918,-,AluJb,SINE,Alu,-20,292,2,651611,651919 -4 - chr18 652275 652733 chr18,652236,652733,+,MER44B,DNA,TcMar-Tigger,1,550,0,652236,652733 +2 + chr18 652733 652786 chr18,652733,652786,+,MIR,SINE,MIR,149,202,-60,652585,652846 +6 + chr18 654192 654214 chr18,654192,654502,+,AluSx1,SINE,Alu,1,310,-2,654192,654504 -2 + chr18 657965 658010 chr18,657965,658010,+,G-rich,Low_complexity,Low_complexity,1,48,0,657965,658010 -6 + chr18 735746 735803 chr18,735738,735803,+,L1PB2,LINE,L1,6024,6097,-54,729715,735857 +1 + chr18 735826 735888 chr18,735826,735888,-,L2c,LINE,L2,-246,3141,3084,735580,738971 -6 - chr18 735888 736194 chr18,735888,736194,+,AluJb,SINE,Alu,1,304,-8,735888,736202 +6 + chr18 736194 736266 chr18,736194,736266,-,L2c,LINE,L2,-304,3083,3016,735890,739281 -6 - chr18 736273 736518 chr18,736273,736518,-,MER20,DNA,hAT-Charlie,0,219,1,736273,736518 -6 - chr18 736966 737024 chr18,736966,737024,+,A-rich,Low_complexity,Low_complexity,1,59,0,736966,737024 +6 + chr18 737170 737459 chr18,737170,737465,+,AluSz,SINE,Alu,1,295,-17,737170,737482 +5 + chr18 738408 738712 chr18,738408,738712,+,AluY,SINE,Alu,1,303,-8,738408,738720 -6 + chr18 738833 739124 chr18,738833,739124,-,AluSq2,SINE,Alu,-23,290,1,738810,739124 +6 - chr18 739144 739331 chr18,739144,739331,+,MIR3,SINE,MIR,2,199,-9,739143,739340 -6 + chr18 739338 739444 chr18,739337,739633,+,AluJr,SINE,Alu,25,307,-5,739313,739638 +5 + chr18 739337 739633 chr18,739337,739633,+,AluJr,SINE,Alu,25,307,-5,739313,739638 -5 + chr18 903103 903143 chr18,903103,903143,+,(T)n,Simple_repeat,Simple_repeat,1,40,0,903103,903143 -6 + chr18 904537 904577 chr18,904537,904577,+,(CAGCAG)n,Simple_repeat,Simple_repeat,1,40,0,904537,904577 -6 + chr18 904782 904840 chr18,904782,904840,+,(CT)n,Simple_repeat,Simple_repeat,1,60,0,904782,904840 -6 + chr18 904898 904941 chr18,904898,904941,+,(GCT)n,Simple_repeat,Simple_repeat,1,43,0,904898,904941 -6 + chr18 905963 905991 chr18,905963,905991,+,(TTTCA)n,Simple_repeat,Simple_repeat,1,29,0,905963,905991 -6 + chr18 926083 926154 chr18,925965,926154,+,MIRc,SINE,MIR,28,246,-22,925938,926176 -5 + chr18 926196 926264 chr18,926196,926264,+,(TCCTGGC)n,Simple_repeat,Simple_repeat,1,71,0,926196,926264 -6 + chr18 962592 962817 chr18,962575,962817,-,AluJr,SINE,Alu,-13,299,64,962562,962880 +5 - chr18 962885 962955 chr18,962885,963024,+,MIRc,SINE,MIR,53,200,-68,962833,963092 -2 + chr18 976589 976878 chr18,970858,976878,-,L1PA3,LINE,L1,0,6155,130,970858,977007 -1 - chr18 976744 976878 chr18,970858,976878,-,L1PA3,LINE,L1,0,6155,130,970858,977007 +1 - chr18 976879 976895 chr18,976879,977875,-,L1PA8,LINE,L1,-3293,3168,2188,973586,980062 -1 - chr18 1061463 1061535 chr18,1061284,1063617,-,L1MA9,LINE,L1,-4221,2628,825,1057063,1064441 -3 - chr18 1099008 1099321 chr18,1098033,1099321,+,LTR12C,LTR,ERV1,3,1579,0,1098031,1099321 +1 + chr18 1099321 1099347 chr18,1099321,1099720,-,L2c,LINE,L2,-705,2714,2307,1098616,1102026 -4 - chr18 1137814 1137864 chr18,1137736,1138128,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,1137736,1138128 -3 - chr18 1174646 1174761 chr18,1174549,1174761,-,AluJr,SINE,Alu,-100,212,2,1174449,1174762 -2 - chr18 1254729 1255214 chr18,1254729,1255488,+,L1MCa,LINE,L1,138,946,-5506,1254592,1260994 -2 + chr18 1268487 1268577 chr18,1268487,1268577,+,MLT1D,LTR,ERVL-MaLR,1,91,-414,1268487,1268991 -6 + chr18 1268649 1268811 chr18,1268649,1268811,-,MLT1L,LTR,ERVL-MaLR,-79,531,342,1268570,1269152 +6 - chr18 1269146 1269257 chr18,1269146,1269257,-,AluYc,SINE,Alu,-2,297,187,1269144,1269443 +5 - chr18 1272442 1272511 chr18,1272385,1272578,+,L1MC5a,LINE,L1,32,235,-2542,1272354,1275120 -3 + chr18 1273361 1273533 chr18,1273152,1274554,-,L1MC4,LINE,L1,-551,7491,6697,1272601,1281250 +3 - chr18 1275966 1276029 chr18,1275949,1276029,+,LTR41C,LTR,ERVL,495,576,-125,1275455,1276154 -4 + chr18 1276059 1276087 chr18,1276059,1276545,-,MLT1D,LTR,ERVL-MaLR,-3,502,21,1276056,1276565 +2 - chr18 1278568 1278633 chr18,1278136,1284028,+,L1PA15,LINE,L1,496,6400,-385,1277641,1284413 -3 + chr18 1353407 1353462 chr18,1353332,1353644,+,L1MEf,LINE,L1,1689,2051,-4349,1351644,1357993 -3 + chr18 1358726 1358762 chr18,1358716,1358792,+,L1MC,LINE,L1,4735,4810,-1336,1353982,1360128 -1 + chr18 1359387 1359430 chr18,1358964,1359430,+,L1MEd,LINE,L1,1094,1566,-5537,1357871,1364967 -4 + chr18 1359436 1359625 chr18,1359436,1359625,-,MLT2D,LTR,ERVL,-3,411,190,1359433,1359814 +1 - chr18 1359625 1359650 chr18,1359625,1359752,+,MER85,DNA,PiggyBac,2,139,0,1359624,1359752 -1 + chr18 1368363 1368407 chr18,1368363,1368407,+,LTR33A,LTR,ERVL,1,38,-482,1368363,1368889 -6 + chr18 1368407 1368597 chr18,1368407,1368775,-,MLT1A1,LTR,ERVL-MaLR,-1,407,1,1368406,1368775 +2 - chr18 1392086 1392100 chr18,1392012,1392100,-,LTR33,LTR,ERVL,-9,506,417,1392003,1392516 +4 - chr18 1392143 1392185 chr18,1392143,1392414,-,LTR33,LTR,ERVL,-230,285,1,1391913,1392414 +1 - chr18 1406987 1407047 chr18,1406620,1407047,+,L1ME3,LINE,L1,3193,3669,-2650,1403428,1409697 -4 + chr18 1407047 1407180 chr18,1407047,1407340,+,AluY,SINE,Alu,1,296,-15,1407047,1407355 -1 + chr18 1408247 1408278 chr18,1407340,1408278,+,L1ME3,LINE,L1,3670,4723,-1596,1403671,1409874 -4 + chr18 1408283 1408344 chr18,1408283,1408408,-,MLT1H,LTR,ERVL-MaLR,0,549,434,1408283,1408841 +1 - chr18 1509183 1509219 chr18,1508916,1509219,-,AluY,SINE,Alu,-4,307,1,1508912,1509219 -1 - chr18 1626239 1626353 chr18,1626230,1626353,-,FLAM_C,SINE,Alu,-20,123,1,1626210,1626353 -2 - chr18 1626353 1626367 chr18,1626353,1626830,-,L1M4a1,LINE,L1,-398,2181,1401,1625955,1628230 -4 - chr18 1646721 1646758 chr18,1646721,1646758,+,L2c,LINE,L2,3349,3385,-2,1643373,1646760 +6 + chr18 1646789 1646910 chr18,1646789,1646910,+,L2c,LINE,L2,3270,3387,0,1643520,1646910 +6 + chr18 1647033 1647090 chr18,1647033,1647090,+,(AT)n,Simple_repeat,Simple_repeat,1,59,0,1647033,1647090 +6 + chr18 1655177 1655538 chr18,1654894,1656410,-,L2b,LINE,L2,-217,3158,1539,1654677,1657948 -1 - chr18 1656450 1656495 chr18,1656415,1656561,-,L1MA9,LINE,L1,-253,6059,5915,1656162,1662475 -3 - chr18 1781714 1781735 chr18,1781658,1781735,+,MLT1K,LTR,ERVL-MaLR,8,83,-512,1781651,1782247 +2 + chr18 2059566 2059579 chr18,2059445,2059579,-,MIRc,SINE,MIR,-113,155,19,2059332,2059597 +4 - chr18 2126200 2126377 chr18,2125878,2126454,+,L2c,LINE,L2,261,854,-2565,2125618,2129019 -3 + chr18 2131497 2131540 chr18,2131445,2131644,-,MIRc,SINE,MIR,-14,254,47,2131431,2131690 +3 - chr18 2561206 2561376 chr18,2561206,2561376,+,L1MEc,LINE,L1,4278,4464,-1855,2556929,2563231 -6 + chr18 2561353 2561650 chr18,2561353,2561650,+,L1MEc,LINE,L1,4596,4903,-1416,2556758,2563066 -6 + chr18 2562023 2562076 chr18,2562023,2562076,+,L1P5,LINE,L1,5428,5480,-676,2556596,2562752 -6 + chr18 2562089 2562220 chr18,2562089,2562383,+,AluJo,SINE,Alu,1,293,-19,2562089,2562402 -1 + chr18 2691674 2691880 chr18,2691602,2692185,-,LTR67B,LTR,ERVL,-14,606,1,2691588,2692185 +3 - chr18 2808455 2808516 chr18,2808372,2808746,-,THE1B,LTR,ERVL-MaLR,0,364,1,2808372,2808746 +3 - chr18 2822355 2822437 chr18,2821373,2822437,-,ERVL-B4-int,LTR,ERVL,-488,5269,3899,2820885,2826335 +5 - chr18 2822456 2822571 chr18,2822456,2822798,+,AluJb,SINE,Alu,1,303,-9,2822456,2822807 -2 + chr18 2832616 2832880 chr18,2832567,2832880,-,MLT2A1,LTR,ERVL,-43,401,99,2832524,2832978 +4 - chr18 2832880 2833065 chr18,2832880,2833175,+,AluY,SINE,Alu,1,296,-15,2832880,2833190 -1 + chr18 2979066 2979119 chr18,2979066,2979140,-,AluSz6,SINE,Alu,-236,76,2,2978830,2979141 -4 - chr18 3216992 3217146 chr18,3216833,3217218,+,MLT1B,LTR,ERVL-MaLR,7,390,0,3216827,3217218 +3 + chr18 3236441 3236485 chr18,3236420,3236485,-,L2a,LINE,L2,-38,3388,3324,3236382,3239808 -2 - chr18 3236466 3236538 chr18,3236466,3236572,-,L2a,LINE,L2,-785,2634,2532,3235681,3239103 -4 - chr18 3261346 3261383 chr18,3261346,3261383,+,(TG)n,Simple_repeat,Simple_repeat,1,37,0,3261346,3261383 -6 + chr18 3261647 3261704 chr18,3261647,3261704,-,MER53,DNA,hAT,-130,63,3,3261517,3261706 +6 - chr18 3326544 3326796 chr18,3326515,3326796,-,AluJr,SINE,Alu,-9,303,25,3326506,3326820 -2 - chr18 3327165 3327292 chr18,3327165,3327503,+,MLT1F,LTR,ERVL-MaLR,182,489,0,3326984,3327503 +5 + chr18 3347776 3347859 chr18,3347749,3347859,-,MIR,SINE,MIR,-112,150,38,3347637,3347896 +5 - chr18 3472843 3473095 chr18,3472788,3473095,-,AluSg4,SINE,Alu,-1,309,2,3472787,3473096 -2 - chr18 3473095 3473203 chr18,3473095,3473464,+,Tigger1,DNA,TcMar-Tigger,227,590,-1828,3472869,3475292 +5 + chr18 3473954 3474142 chr18,3473776,3474462,+,Tigger1,DNA,TcMar-Tigger,591,1258,-1160,3473186,3475622 +3 + chr18 3596597 3596706 chr18,3596597,3596706,+,L2a,LINE,L2,3305,3421,-5,3593293,3596711 +6 + chr18 3598068 3598352 chr18,3598068,3598363,+,AluSc,SINE,Alu,1,290,-19,3598068,3598382 +5 + chr18 3606682 3606781 chr18,3606682,3606781,+,L1ME4a,LINE,L1,6019,6121,-3,3600664,3606784 +6 + chr18 3606842 3607132 chr18,3606842,3607132,-,AluSq,SINE,Alu,-17,296,1,3606825,3607132 -6 - chr18 3607190 3607457 chr18,3607190,3607457,-,AluJr,SINE,Alu,-6,306,1,3607184,3607457 -6 - chr18 3607711 3608050 chr18,3607711,3608050,+,MLT1L,LTR,ERVL-MaLR,2,411,-199,3607710,3608249 +6 + chr18 3608050 3608336 chr18,3608050,3608336,+,AluSp,SINE,Alu,2,296,-17,3608049,3608353 +5 + chr18 3771253 3771305 chr18,3771253,3771305,+,(TCT)n,Simple_repeat,Simple_repeat,1,53,0,3771253,3771305 -6 + chr18 3891932 3892005 chr18,3891777,3892042,-,AluJr4,SINE,Alu,-20,292,1,3891757,3892042 -1 - chr18 3896157 3896274 chr18,3896061,3896274,-,MIRb,SINE,MIR,-16,252,20,3896045,3896293 -2 - chr18 3896602 3897069 chr18,3896602,3897214,+,MER39,LTR,ERV1,1,707,0,3896602,3897214 +5 + chr18 3962353 3962430 chr18,3962170,3962458,-,HAL1ME,LINE,L1,-635,1830,1507,3961535,3963964 -1 - chr18 4013619 4013687 chr18,4013559,4013687,+,L2,LINE,L2,1415,1557,-1862,4012145,4015549 +2 + chr18 4275301 4275379 chr18,4275171,4275676,+,L2a,LINE,L2,2918,3415,-11,4272254,4275687 +3 + chr18 4294283 4294362 chr18,4294283,4294362,+,L2b,LINE,L2,3100,3175,-200,4291184,4294562 +6 + chr18 4294416 4295192 chr18,4294416,4295192,-,LTR1B,LTR,ERV1,0,824,1,4294416,4295192 -6 - chr18 4775054 4775123 chr18,4774349,4775654,+,Tigger2,DNA,TcMar-Tigger,1,1364,-1354,4774349,4777008 -5 + chr18 4946889 4947138 chr18,4946889,4947166,+,AluSz,SINE,Alu,6,307,-5,4946884,4947171 -2 + chr18 5003975 5004003 chr18,5003302,5004134,+,L1MA2,LINE,L1,4159,4997,-2568,4999144,5006702 -3 + chr18 5004397 5004537 chr18,5004136,5010155,+,L1PA2,LINE,L1,124,6154,-1,5004013,5010156 -1 + chr18 5081182 5081240 chr18,5081006,5081726,-,L2c,LINE,L2,-1579,1840,1087,5079427,5082812 -1 - chr18 5085003 5085037 chr18,5085003,5085037,+,A-rich,Low_complexity,Low_complexity,1,34,0,5085003,5085037 +6 + chr18 5085229 5085477 chr18,5085229,5085874,+,LTR12,LTR,ERV1,1,688,0,5085229,5085874 +5 + chr18 5170670 5171026 chr18,5170613,5171141,+,MLT1G3,LTR,ERVL-MaLR,5,584,-11,5170609,5171152 +5 + chr18 5233201 5233283 chr18,5233201,5233283,+,MIRb,SINE,MIR,12,92,-176,5233190,5233459 -6 + chr18 5233311 5233351 chr18,5233311,5233351,+,(ATT)n,Simple_repeat,Simple_repeat,1,40,0,5233311,5233351 -6 + chr18 5233452 5233510 chr18,5233452,5234008,+,L1ME3E,LINE,L1,805,1380,-4862,5232648,5238870 -2 + chr18 5239079 5239162 chr18,5239079,5239162,-,L2c,LINE,L2,-20,3367,3283,5239059,5242444 -6 - chr18 5239457 5239514 chr18,5239457,5239514,+,MIR3,SINE,MIR,79,135,-133,5239379,5239647 +6 + chr18 5241303 5241391 chr18,5241303,5241391,+,Tigger19b,DNA,TcMar-Tigger,283,375,-175,5241021,5241566 +6 + chr18 5241743 5241882 chr18,5241743,5241882,-,MER5A,DNA,hAT-Charlie,-26,163,29,5241717,5241910 -6 - chr18 5243594 5243609 chr18,5243448,5243609,-,L3,LINE,CR1,-1491,2608,2441,5241957,5246049 -2 - chr18 5243654 5243958 chr18,5243654,5243958,+,AluSz6,SINE,Alu,5,307,-5,5243650,5243963 +5 + chr18 5244238 5244674 chr18,5244238,5244674,-,MLT2B2,LTR,ERVL,-11,504,1,5244227,5244674 -6 - chr18 5244767 5244972 chr18,5244767,5244972,-,MER2,DNA,TcMar-Tigger,0,345,135,5244767,5245106 -6 - chr18 5245015 5245366 chr18,5245015,5245366,+,MLT1J,LTR,ERVL-MaLR,45,407,-105,5244971,5245471 +6 + chr18 5245372 5245390 chr18,5245372,5245390,+,(TG)n,Simple_repeat,Simple_repeat,1,18,0,5245372,5245390 +6 + chr18 5245393 5245415 chr18,5245393,5245415,+,(GA)n,Simple_repeat,Simple_repeat,1,22,0,5245393,5245415 +6 + chr18 5245477 5245685 chr18,5245477,5245685,+,MLT1F1-int,LTR,ERVL-MaLR,49,263,-1124,5245429,5246809 +6 + chr18 5245926 5245998 chr18,5245926,5245998,+,(AT)n,Simple_repeat,Simple_repeat,1,72,0,5245926,5245998 +6 + chr18 5246010 5246279 chr18,5246010,5246279,-,MLT1H,LTR,ERVL-MaLR,-31,518,250,5245979,5246528 -6 - chr18 5246358 5246508 chr18,5246358,5247127,+,MER63C,DNA,hAT-Blackjack,3,853,-77,5246356,5247204 +5 + chr18 5381788 5381803 chr18,5381788,5381907,+,Tigger14a,DNA,TcMar-Tigger,118,246,-78,5381671,5381985 -2 + chr18 5385031 5385115 chr18,5384765,5385115,-,L1ME4a,LINE,L1,-294,5830,5449,5384471,5390563 +4 - chr18 5463627 5463834 chr18,5463304,5463872,+,MLT1E3,LTR,ERVL-MaLR,1,585,-39,5463304,5463911 +1 + chr18 5480960 5480975 chr18,5480960,5480987,+,A-rich,Low_complexity,Low_complexity,1,27,0,5480960,5480987 +5 + chr18 5570177 5570217 chr18,5570028,5570361,-,Tigger15a,DNA,TcMar-Tigger,-252,463,69,5569776,5570429 -3 - chr18 5748819 5748964 chr18,5748596,5749144,+,MLT1F2,LTR,ERVL-MaLR,3,560,0,5748594,5749144 +1 + chr18 5794794 5794983 chr18,5794696,5794983,+,Tigger9a,DNA,TcMar-Tigger,1,295,-437,5794696,5795420 +2 + chr18 5794983 5795182 chr18,5794983,5795182,-,MER5A,DNA,hAT-Charlie,-2,187,1,5794981,5795182 -6 - chr18 5795182 5795614 chr18,5795182,5795614,+,Tigger9a,DNA,TcMar-Tigger,296,729,-3,5794887,5795617 +6 + chr18 5876253 5876328 chr18,5876250,5876399,+,AluJo,SINE,Alu,136,282,-30,5876115,5876429 +5 + chr18 5887535 5887722 chr18,5887535,5887751,+,MIRb,SINE,MIR,50,265,-3,5887486,5887754 +1 + chr18 5960662 5960735 chr18,5960662,5960735,-,MIR3,SINE,MIR,-71,137,66,5960591,5960800 -6 - chr18 6259268 6259352 chr18,6259268,6259352,-,L1P4,LINE,L1,-406,5760,5677,6258862,6265028 -6 - chr18 6259344 6260716 chr18,6259344,6260716,-,L1MC5a,LINE,L1,-648,5518,4220,6258696,6264935 -6 - chr18 6395032 6395209 chr18,6395032,6395209,+,AluJb,SINE,Alu,110,286,-26,6394923,6395235 -6 + chr18 6396505 6396777 chr18,6396505,6396777,+,Helitron1Na_Mam,RC,Helitron,35,334,-728,6396471,6397505 -6 + chr18 6396798 6396938 chr18,6396798,6396938,-,MIR,SINE,MIR,-44,218,44,6396754,6396981 +6 - chr18 6396942 6397114 chr18,6396942,6397114,+,Helitron1Nb_Mam,RC,Helitron,356,553,-563,6396587,6397677 -6 + chr18 6397566 6397887 chr18,6397566,6397887,+,AluJr,SINE,Alu,1,311,-1,6397566,6397888 -6 + chr18 6397979 6398020 chr18,6397979,6398105,+,Charlie18a,DNA,hAT-Charlie,138,274,-68,6397842,6398173 -1 + chr18 6495536 6495648 chr18,6495112,6495648,-,LTR39,LTR,ERV1,-252,531,1,6494860,6495648 -2 - chr18 6642315 6642478 chr18,6642315,6642712,+,MLT1J,LTR,ERVL-MaLR,26,408,-104,6642290,6642816 -1 + chr18 6727587 6727911 chr18,6727587,6727911,+,MER46C,DNA,TcMar-Tigger,6,334,-4,6727582,6727915 +6 + chr18 6728085 6728153 chr18,6728085,6728153,+,MIR,SINE,MIR,122,195,-35,6727964,6728188 +6 + chr18 6728365 6728467 chr18,6728365,6728467,-,MIRb,SINE,MIR,-91,177,74,6728274,6728540 -6 - chr18 6874804 6875002 chr18,6874804,6875002,-,MIR,SINE,MIR,-36,226,25,6874768,6875026 +6 - chr18 6919517 6919800 chr18,6919517,6919800,-,L1MA9,LINE,L1,-25,6287,6015,6919492,6925814 +6 - chr18 6919866 6920053 chr18,6919866,6920053,+,L2,LINE,L2,2429,2616,-803,6917438,6920856 -6 + chr18 6920264 6920489 chr18,6920264,6920489,+,(GGTGGT)n,Simple_repeat,Simple_repeat,1,227,0,6920264,6920489 -6 + chr18 6925477 6925532 chr18,6925376,6925532,+,L1MA10,LINE,L1,6170,6327,-7,6919207,6925539 -5 + chr18 6925621 6926180 chr18,6925621,6926180,+,LTR19B,LTR,ERV1,1,580,0,6925621,6926180 -6 + chr18 6926278 6926582 chr18,6926278,6926582,+,AluJr,SINE,Alu,2,299,-13,6926277,6926595 -6 + chr18 6926636 6926936 chr18,6926636,6926936,+,AluJb,SINE,Alu,1,300,-12,6926636,6926948 -6 + chr18 6927460 6927584 chr18,6927460,6927609,+,AluJr,SINE,Alu,140,304,-8,6927321,6927617 -2 + chr18 6928349 6928719 chr18,6928222,6928872,+,LTR9,LTR,ERV1,1,612,0,6928222,6928872 -5 + chr18 6928851 6928872 chr18,6928222,6928872,+,LTR9,LTR,ERV1,1,612,0,6928222,6928872 -5 + chr18 6954677 6954861 chr18,6953832,6954861,-,L2a,LINE,L2,-1703,1716,592,6952129,6955452 -1 - chr18 6956505 6956534 chr18,6956505,6956534,+,(CAGCTC)n,Simple_repeat,Simple_repeat,1,29,0,6956505,6956534 +6 + chr18 6957342 6957375 chr18,6957342,6957375,+,(ATGA)n,Simple_repeat,Simple_repeat,1,33,0,6957342,6957375 +6 + chr18 7076817 7076864 chr18,7076234,7076864,+,L1MC5a,LINE,L1,2038,2609,-168,7074197,7077032 +1 + chr18 7076898 7076908 chr18,7076898,7076970,+,L1ME2z,LINE,L1,6351,6430,-14,7070548,7076984 +4 + chr18 7747533 7747658 chr18,7747401,7747875,-,MLT1C,LTR,ERVL-MaLR,0,467,1,7747401,7747875 +5 - chr18 7749322 7749345 chr18,7749322,7749345,+,(A)n,Simple_repeat,Simple_repeat,1,23,0,7749322,7749345 -6 + chr18 7751020 7751087 chr18,7751010,7751087,+,Charlie17a,DNA,hAT-Charlie,140,217,0,7750871,7751087 -4 + chr18 7751439 7751505 chr18,7751439,7751540,+,MIR3,SINE,MIR,67,168,-40,7751373,7751580 -2 + chr18 7814839 7814989 chr18,7814839,7814989,+,LOR1b,LTR,ERV1,1,149,-312,7814839,7815301 +6 + chr18 7814981 7815401 chr18,7814981,7815401,+,LOR1a,LTR,ERV1,68,492,-5,7814914,7815406 +6 + chr18 7815536 7815730 chr18,7815536,7815730,+,FAM,SINE,Alu,1,184,-1,7815536,7815731 +5 + chr18 8403294 8403347 chr18,8403294,8403347,-,L1MB7,LINE,L1,-7,6177,6124,8403287,8409470 -6 - chr18 8403344 8403428 chr18,8403344,8403428,+,L1PA17,LINE,L1,5961,6050,-116,8397384,8403544 +6 + chr18 8403475 8403586 chr18,8403475,8403586,+,L1PA17,LINE,L1,6040,6152,-14,8397436,8403600 +6 + chr18 8403580 8404224 chr18,8403580,8404224,-,L1MB7,LINE,L1,-43,6141,5484,8403537,8409707 -6 - chr18 8404286 8404376 chr18,8404286,8404376,+,L2c,LINE,L2,3246,3347,-40,8401041,8404416 +6 + chr18 8405016 8405161 chr18,8405016,8405181,+,AluJr,SINE,Alu,137,304,-8,8404880,8405189 +5 + chr18 8635221 8635351 chr18,8635221,8635351,-,L1ME4c,LINE,L1,-378,452,313,8634843,8635663 +6 - chr18 8696080 8696121 chr18,8696080,8696451,-,LOR1b,LTR,ERV1,0,461,63,8696080,8696513 +2 - chr18 9112478 9112738 chr18,9112478,9112783,-,AluSz,SINE,Alu,-8,304,1,9112470,9112783 +2 - chr18 9115669 9115872 chr18,9115574,9115872,+,AluSp,SINE,Alu,1,297,-16,9115574,9115888 -4 + chr18 9259772 9259954 chr18,9259772,9259954,+,MIRc,SINE,MIR,67,268,0,9259706,9259954 +6 + chr18 9260263 9260351 chr18,9260263,9260351,+,AluJr,SINE,Alu,1,89,-223,9260263,9260574 +6 + chr18 9315194 9315263 chr18,9315010,9315287,+,AluSx3,SINE,Alu,22,298,-13,9314989,9315300 -5 + chr18 9473688 9473775 chr18,9473688,9473775,-,MLT1L,LTR,ERVL-MaLR,-206,404,314,9473482,9474088 +6 - chr18 9506242 9506376 chr18,9505917,9506376,-,MER65C,LTR,ERV1,0,461,1,9505917,9506376 -1 - chr18 9506376 9506448 chr18,9506376,9506448,-,L1ME2z,LINE,L1,-1080,5755,5681,9505296,9512128 -6 - chr18 9506471 9506507 chr18,9506471,9506507,+,(AC)n,Simple_repeat,Simple_repeat,1,37,0,9506471,9506507 +6 + chr18 9506541 9506683 chr18,9506541,9506683,-,AluJb,SINE,Alu,0,312,166,9506541,9506848 -6 - chr18 9506692 9507115 chr18,9506692,9507115,-,L1ME2z,LINE,L1,-934,5603,5140,9505758,9512254 -6 - chr18 9507124 9507386 chr18,9507124,9507386,-,L1ME2z,LINE,L1,-6349,284,40,9500775,9507425 -6 - chr18 9507694 9508064 chr18,9507694,9508064,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,9507694,9508064 -6 - chr18 9508549 9508723 chr18,9508549,9508723,+,MIRb,SINE,MIR,10,210,-58,9508540,9508781 +6 + chr18 9508924 9509084 chr18,9508924,9509084,-,L2c,LINE,L2,-91,3296,3137,9508833,9512220 -6 - chr18 9509101 9509259 chr18,9509101,9509259,-,L1ME1,LINE,L1,0,6179,6009,9509101,9515267 -6 - chr18 9509600 9509726 chr18,9509600,9509912,+,AluY,SINE,Alu,1,310,-1,9509600,9509913 +5 + chr18 9587390 9587532 chr18,9587390,9587705,-,AluSz6,SINE,Alu,0,312,1,9587390,9587705 -4 - chr18 9589796 9589918 chr18,9589636,9589918,+,AluSz,SINE,Alu,21,303,-9,9589616,9589927 +2 + chr18 9912316 9912672 chr18,9912294,9912672,-,LTR12_,LTR,ERV1,-334,354,1,9911960,9912672 +5 - chr18 10125340 10125501 chr18,10125339,10126307,-,L1ME3A,LINE,L1,-17,6156,5184,10125322,10131490 -1 - chr18 10327201 10327270 chr18,10327201,10327287,+,MIR3,SINE,MIR,64,150,-58,10327138,10327345 -2 + chr18 10372227 10372380 chr18,10372191,10372967,+,L2,LINE,L2,1973,2833,-586,10370219,10373553 -1 + chr18 10411756 10411884 chr18,10411756,10411884,-,MIR,SINE,MIR,-124,144,11,10411632,10411894 +6 - chr18 10411862 10412038 chr18,10411862,10412038,-,L3,LINE,CR1,-160,3939,3752,10411702,10415789 +6 - chr18 10412113 10412413 chr18,10412113,10412413,-,AluSx1,SINE,Alu,-7,305,6,10412106,10412418 +6 - chr18 10412449 10412744 chr18,10412449,10412744,+,AluJb,SINE,Alu,5,300,-12,10412445,10412756 -6 + chr18 10594590 10594632 chr18,10594504,10594632,+,HAL1M8,LINE,L1,650,779,-2212,10593855,10596844 +1 + chr18 10594639 10594674 chr18,10594639,10594674,+,Alu,SINE,Alu,1,35,-98,10594639,10594772 +6 + chr18 10594674 10594716 chr18,10594674,10594851,+,AluJb,SINE,Alu,106,275,-37,10594569,10594888 +4 + chr18 10595794 10595886 chr18,10595775,10595908,-,FLAM_C,SINE,Alu,-10,133,1,10595765,10595908 -3 - chr18 10598858 10599121 chr18,10598726,10599208,-,Tigger17a,DNA,TcMar-Tigger,-149,505,2,10598577,10599209 -3 - chr18 10600996 10601313 chr18,10599604,10602698,-,Harlequin-int,LTR,ERV1,-1770,5126,2053,10597834,10604750 -3 - chr18 10664721 10664836 chr18,10664721,10664836,+,MIRb,SINE,MIR,99,220,-48,10664623,10664884 +6 + chr18 10705639 10705691 chr18,10705639,10705691,+,(CCT)n,Simple_repeat,Simple_repeat,1,50,0,10705639,10705691 +6 + chr18 10894512 10894805 chr18,10894470,10894942,+,MER50,LTR,ERV1,264,734,0,10894207,10894942 +5 + chr18 11368533 11368554 chr18,11368494,11368554,-,L1MB4,LINE,L1,-1,6179,6120,11368493,11374673 +4 - chr18 11368554 11368652 chr18,11368554,11369090,+,MER34C_,LTR,ERV1,37,585,0,11368518,11369090 -2 + chr18 11390052 11390202 chr18,11390052,11390202,-,MIRb,SINE,MIR,-73,195,32,11389979,11390233 +6 - chr18 11390601 11390729 chr18,11390601,11390811,+,MIRb,SINE,MIR,4,213,-55,11390598,11390866 -1 + chr18 11447756 11447990 chr18,11447369,11448003,+,L1PA16,LINE,L1,6,656,-6197,11447364,11454200 -5 + chr18 11454478 11454533 chr18,11454476,11454800,-,MER58B,DNA,hAT-Charlie,-3,338,15,11454473,11454814 -1 - chr18 11454752 11454800 chr18,11454476,11454800,-,MER58B,DNA,hAT-Charlie,-3,338,15,11454473,11454814 -1 - chr18 11465919 11465996 chr18,11465919,11466160,+,MamRep605,LTR?,LTR?,35,292,-557,11465885,11466717 +5 + chr18 11491563 11491679 chr18,11491274,11491679,-,L3,LINE,CR1,-3,4096,3666,11491271,11495344 -2 - chr18 11666671 11666977 chr18,11666671,11666977,-,MER102a,DNA,hAT-Charlie,0,330,16,11666671,11666992 +6 - chr18 11668030 11668105 chr18,11668030,11668105,-,MIRc,SINE,MIR,-32,236,160,11667998,11668264 +6 - chr18 11668607 11668632 chr18,11668607,11668632,+,(GA)n,Simple_repeat,Simple_repeat,1,25,0,11668607,11668632 -6 + chr18 11668757 11668978 chr18,11668757,11668978,-,MER4CL34,LTR,ERV1,-4,868,547,11668753,11669524 +6 - chr18 11668965 11669161 chr18,11668965,11669161,-,MER4CL34,LTR,ERV1,-540,225,1,11668425,11669161 +6 - chr18 11852582 11852627 chr18,11852582,11852627,+,(T)n,Simple_repeat,Simple_repeat,1,45,0,11852582,11852627 -6 + chr18 11910634 11910681 chr18,11910412,11910681,+,L1MC5a,LINE,L1,2447,2710,-67,11907966,11910748 -5 + chr18 11910681 11910862 chr18,11910681,11911188,+,MLT1D,LTR,ERVL-MaLR,1,505,0,11910681,11911188 -2 + chr18 11914195 11914344 chr18,11914097,11914546,-,MLT1E,LTR,ERVL-MaLR,-51,602,140,11914046,11914685 +1 - chr18 11994092 11994372 chr18,11994092,11994391,+,AluJr,SINE,Alu,1,298,-14,11994092,11994405 -2 + chr18 12031178 12031218 chr18,12031174,12031463,-,AluJb,SINE,Alu,-14,298,1,12031160,12031463 +5 - chr18 12031696 12031903 chr18,12031606,12031903,+,AluSz6,SINE,Alu,1,300,-12,12031606,12031915 -4 + chr18 12081540 12081552 chr18,12081267,12081552,-,AluSq2,SINE,Alu,-27,286,1,12081240,12081552 -1 - chr18 12085179 12085267 chr18,12085179,12085654,+,REP522,Satellite,telo,1155,1669,-148,12084025,12085802 +5 + chr18 12200012 12200035 chr18,12200012,12200035,+,(CTGC)n,Simple_repeat,Simple_repeat,1,23,0,12200012,12200035 +6 + chr18 12281085 12281375 chr18,12281085,12281375,-,AluSq2,SINE,Alu,-14,299,1,12281071,12281375 -6 - chr18 12281397 12281608 chr18,12281397,12281608,-,AluJo,SINE,Alu,-116,196,9,12281281,12281616 -6 - chr18 12281921 12282061 chr18,12281921,12282061,+,MER21C,LTR,ERVL,1,197,-741,12281921,12282802 +6 + chr18 12282061 12282354 chr18,12282061,12282354,-,AluJo,SINE,Alu,-14,298,1,12282047,12282354 -6 - chr18 12282354 12282739 chr18,12282354,12283069,+,MER21C,LTR,ERVL,106,932,-6,12282249,12283075 +5 + chr18 12291132 12291192 chr18,12291132,12291192,+,L2a,LINE,L2,3363,3426,0,12287770,12291192 +6 + chr18 12291332 12291371 chr18,12291332,12291371,+,G-rich,Low_complexity,Low_complexity,1,40,0,12291332,12291371 +6 + chr18 12437572 12437635 chr18,12437393,12437687,-,AluY,SINE,Alu,-22,289,1,12437371,12437687 -5 - chr18 12443048 12443212 chr18,12443048,12443212,+,Tigger20a,DNA,TcMar-Tigger,436,617,-356,12442613,12443568 +6 + chr18 12443423 12444753 chr18,12443423,12444753,-,Tigger1,DNA,TcMar-Tigger,-351,2067,656,12443072,12445408 -5 - chr18 12444753 12444915 chr18,12444753,12444915,-,FRAM,SINE,Alu,-7,169,11,12444746,12444925 -6 - chr18 12444915 12445505 chr18,12444915,12445505,-,Tigger1,DNA,TcMar-Tigger,-351,655,28,12444564,12445532 -6 - chr18 12446004 12446384 chr18,12446004,12446384,-,AluSx,SINE,Alu,-10,302,1,12445994,12446384 -6 - chr18 12670650 12670942 chr18,12670650,12670942,-,AluJr,SINE,Alu,-2,310,7,12670648,12670948 +6 - chr18 12671111 12671145 chr18,12671111,12671243,-,AluJr,SINE,Alu,-181,131,1,12670930,12671243 +1 - chr18 12738965 12739057 chr18,12738869,12739057,-,AluSx1,SINE,Alu,-123,189,1,12738746,12739057 +5 - chr18 12739179 12739215 chr18,12739179,12739480,+,AluSx1,SINE,Alu,1,301,-11,12739179,12739491 -2 + chr18 12774651 12774809 chr18,12774649,12774809,-,HAL1M8,LINE,L1,-1686,1305,1130,12772963,12775938 +5 - chr18 12774823 12775325 chr18,12774823,12775325,-,L1MC3,LINE,L1,-8,7777,7240,12774815,12782564 +6 - chr18 12775509 12775530 chr18,12775509,12775530,+,(CA)n,Simple_repeat,Simple_repeat,1,21,0,12775509,12775530 -6 + chr18 12775530 12775649 chr18,12775530,12775649,-,L1MB3,LINE,L1,-7,6176,6041,12775523,12781689 +6 - chr18 12775721 12775923 chr18,12775721,12777416,-,LTR12C,LTR,ERV1,0,1579,3,12775721,12777418 +1 - chr18 12986922 12986947 chr18,12986922,12986947,+,(CTC)n,Simple_repeat,Simple_repeat,1,25,0,12986922,12986947 -6 + chr18 13183404 13183594 chr18,13183404,13183594,-,L1MD2,LINE,L1,-1,6358,6159,13183403,13189752 +6 - chr18 13183594 13183673 chr18,13183594,13183673,-,MER94,DNA,hAT-Blackjack,-25,109,30,13183569,13183702 +6 - chr18 13185549 13185617 chr18,13185549,13185691,+,MIRb,SINE,MIR,82,219,-49,13185468,13185740 -1 + chr18 13203774 13204083 chr18,13203760,13204083,-,AluSz,SINE,Alu,-7,305,1,13203753,13204083 +5 - chr18 13204565 13204755 chr18,13204565,13204755,-,L1MC1,LINE,L1,-4,6340,6144,13204561,13210898 +6 - chr18 13204776 13204976 chr18,13204776,13204976,+,AluJr4,SINE,Alu,27,226,-86,13204750,13205062 -6 + chr18 13204976 13205369 chr18,13204976,13205465,-,L1MC1,LINE,L1,-215,6118,5600,13204761,13211064 +2 - chr18 13214154 13214315 chr18,13214154,13214315,+,MamGypLTR1c,LTR,Gypsy,29,182,-600,13214126,13214915 -6 + chr18 13216334 13216367 chr18,13216334,13216491,+,MIRb,SINE,MIR,88,268,0,13216247,13216491 -1 + chr18 13234972 13235125 chr18,13234972,13235265,+,AluSp,SINE,Alu,6,297,-16,13234967,13235281 -2 + chr18 13236424 13236470 chr18,13236307,13236615,-,AluSp,SINE,Alu,-11,302,1,13236296,13236615 +1 - chr18 13240543 13240562 chr18,13240543,13240562,-,OldhAT1,DNA,hAT-Ac,-1595,1253,1237,13238948,13241798 -6 - chr18 13240562 13240640 chr18,13240562,13240640,+,(TGTGTGCATG)n,Simple_repeat,Simple_repeat,1,84,0,13240562,13240640 +6 + chr18 13240640 13240732 chr18,13240640,13240732,-,OldhAT1,DNA,hAT-Ac,-1612,1236,1146,13239028,13241877 -6 - chr18 13240670 13240800 chr18,13240670,13240800,+,L2b,LINE,L2,3219,3357,-18,13237452,13240818 +6 + chr18 13240910 13240944 chr18,13240910,13240944,+,(CTTTT)n,Simple_repeat,Simple_repeat,1,35,0,13240910,13240944 +6 + chr18 13240944 13241226 chr18,13240944,13241226,-,AluSp,SINE,Alu,-28,285,1,13240916,13241226 -6 - chr18 13279742 13279833 chr18,13279742,13279833,+,L3,LINE,CR1,3903,3990,-109,13275840,13279942 -6 + chr18 13366145 13366233 chr18,13366075,13366233,-,AluJo,SINE,Alu,-17,295,141,13366058,13366373 +4 - chr18 13419421 13419495 chr18,13419401,13419495,-,AluJo,SINE,Alu,-10,302,217,13419391,13419711 +5 - chr18 13419506 13419688 chr18,13419506,13419688,-,MIR,SINE,MIR,-46,216,33,13419460,13419720 +6 - chr18 13419708 13419806 chr18,13419708,13419806,+,MIR3,SINE,MIR,106,205,-3,13419603,13419809 -6 + chr18 13420473 13420623 chr18,13420473,13420623,-,MIRb,SINE,MIR,-36,232,59,13420437,13420681 +6 - chr18 13426101 13426113 chr18,13426101,13426425,-,L4_C_Mam,LINE,RTE-X,-3952,1186,855,13422149,13427279 +2 - chr18 13461124 13461185 chr18,13461124,13461185,+,L2c,LINE,L2,3325,3387,0,13457800,13461185 -6 + chr18 13461430 13461464 chr18,13461430,13462065,-,MER51A,LTR,ERV1,0,634,1,13461430,13462065 +2 - chr18 13471510 13471612 chr18,13471510,13471612,-,MER5A,DNA,hAT-Charlie,-87,102,1,13471423,13471612 +6 - chr18 13486736 13486801 chr18,13486736,13486801,+,L1MB5,LINE,L1,6098,6165,-9,13480639,13486810 +6 + chr18 13486900 13487079 chr18,13486900,13487079,-,L1M5,LINE,L1,-686,5556,5363,13486214,13492441 -6 - chr18 13487603 13487836 chr18,13487603,13487836,-,L2b,LINE,L2,-1,3374,3110,13487602,13490945 -6 - chr18 13488844 13489146 chr18,13488844,13489146,-,MER41E,LTR,ERV1,0,595,294,13488844,13489439 -6 - chr18 13489146 13489452 chr18,13489146,13489452,-,AluSp,SINE,Alu,-5,308,1,13489141,13489452 -6 - chr18 13489452 13489724 chr18,13489452,13489724,-,MER41E,LTR,ERV1,-302,293,1,13489150,13489724 -6 - chr18 13490226 13490473 chr18,13490226,13490473,+,Tigger4a,DNA,TcMar-Tigger,6,235,-1,13490221,13490474 +6 + chr18 13501235 13501268 chr18,13501235,13501268,+,(TAA)n,Simple_repeat,Simple_repeat,1,33,0,13501235,13501268 -6 + chr18 13515793 13516107 chr18,13515793,13516114,-,AluJr,SINE,Alu,0,312,1,13515793,13516114 +2 - chr18 13519732 13519779 chr18,13519478,13519779,+,AluSx,SINE,Alu,1,296,-16,13519478,13519795 -4 + chr18 13520570 13520861 chr18,13520570,13520861,+,AluJo,SINE,Alu,1,293,-19,13520570,13520880 -6 + chr18 13521106 13521177 chr18,13521106,13521177,-,Charlie14a,DNA,hAT-Charlie,-1095,71,1,13520011,13521177 +6 - chr18 13521920 13522035 chr18,13521920,13522035,+,MIR,SINE,MIR,94,218,-44,13521827,13522079 -6 + chr18 13522342 13522364 chr18,13522342,13522364,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,13522342,13522364 -6 + chr18 13561459 13561601 chr18,13561459,13561601,+,Eulor2C,DNA?,DNA?,1,155,-14,13561459,13561615 -6 + chr18 13710249 13710483 chr18,13710180,13710483,-,AluSx,SINE,Alu,-9,303,1,13710171,13710483 +5 - chr18 14010054 14010917 chr18,14009956,14011907,-,SVA_D,Retroposon,SVA,0,1386,1,14009956,14011907 -5 - chr18 14248967 14249023 chr18,14248822,14249226,+,L2c,LINE,L2,2939,3386,-1,14245884,14249227 +3 + chr18 14250288 14250316 chr18,14250135,14250316,-,L1MC4,LINE,L1,-1039,7003,6819,14249096,14257134 -2 - chr18 14339573 14339640 chr18,14339573,14339890,+,LTR16C,LTR,ERVL,139,460,-29,14339435,14339919 +4 + chr18 14340382 14340493 chr18,14340275,14340493,-,MIR,SINE,MIR,-1,261,15,14340274,14340507 -1 - chr18 14341869 14342146 chr18,14341869,14342146,+,L2a,LINE,L2,3088,3402,-24,14338782,14342170 +6 + chr18 14342188 14342525 chr18,14342188,14342577,+,LTR46,LTR,ERV1,1,460,0,14342188,14342577 +5 + chr18 14479350 14479393 chr18,14479350,14480865,+,L1MA7,LINE,L1,4226,5781,-510,14475125,14481375 -2 + chr18 14498592 14498660 chr18,14498192,14498660,-,L1P4,LINE,L1,-670,5496,5027,14497522,14503686 +4 - chr18 14816363 14816637 chr18,14816363,14816663,+,AluY,SINE,Alu,1,303,-8,14816363,14816671 -2 + chr18 14825151 14825224 chr18,14824945,14825224,-,HERVK22-int,LTR,ERVK,-6542,295,12,14818403,14825235 +4 - chr18 14825232 14825249 chr18,14825232,14825704,-,LTR22B1,LTR,ERVK,-5,521,1,14825227,14825704 +1 - chr18 14877611 14877663 chr18,14877562,14877682,-,MIRb,SINE,MIR,-55,207,84,14877507,14877765 -1 - chr18 14884013 14884052 chr18,14884013,14884499,+,MLT1F2,LTR,ERVL-MaLR,6,560,0,14884008,14884499 +5 + chr18 14903580 14903595 chr18,14903173,14903595,-,LTR29,LTR,ERV1,0,622,166,14903173,14903760 -1 - chr18 14905443 14905883 chr18,14905356,14906061,-,MER4D,LTR,ERV1,-187,716,1,14905169,14906061 -1 - chr18 14910095 14910111 chr18,14910095,14912850,-,L1PB4,LINE,L1,-3,6153,3413,14910092,14916262 -5 - chr18 14969878 14969907 chr18,14969805,14969907,+,MIRc,SINE,MIR,40,142,-126,14969766,14970033 -4 + chr18 14969898 14970033 chr18,14969898,14970033,-,MER5A,DNA,hAT-Charlie,-24,165,32,14969874,14970064 +6 - chr18 14970079 14970190 chr18,14970079,14970190,-,MER5A1,DNA,hAT-Charlie,-54,112,1,14970025,14970190 +6 - chr18 14971497 14971848 chr18,14971322,14971848,+,MLT1G3,LTR,ERVL-MaLR,31,570,-25,14971292,14971873 +1 + chr18 14972834 14973127 chr18,14972834,14973127,-,AluSx1,SINE,Alu,-19,293,1,14972815,14973127 -6 - chr18 14973490 14973613 chr18,14973490,14973613,+,MIRc,SINE,MIR,5,132,-136,14973486,14973749 +6 + chr18 14978739 14978889 chr18,14978715,14978889,+,MIRb,SINE,MIR,34,227,-41,14978682,14978930 +1 + chr18 14978960 14979019 chr18,14978960,14979019,+,L2a,LINE,L2,3364,3422,-4,14975597,14979023 +6 + chr18 14990724 14990847 chr18,14990724,14990847,-,L1MA3,LINE,L1,0,6305,6183,14990724,14997029 +6 - chr18 14990863 14991032 chr18,14990863,14991032,-,THE1C,LTR,ERVL-MaLR,-202,173,1,14990661,14991032 +6 - chr18 14993081 14993235 chr18,14993081,14993325,+,Tigger3b,DNA,TcMar-Tigger,698,944,-287,14992384,14993612 -1 + chr18 15075445 15075557 chr18,15075266,15075641,+,THE1B,LTR,ERVL-MaLR,1,364,0,15075266,15075641 +1 + chr18 15112063 15112122 chr18,15111428,15113646,-,L1M4,LINE,L1,-1355,4791,2475,15110073,15116120 -3 - chr18 15122480 15122767 chr18,15122480,15122872,+,LTR12D,LTR,ERV1,906,1254,0,15121575,15122872 +5 + chr18 15159724 15160107 chr18,15159484,15160422,-,Tigger6a,DNA,TcMar-Tigger,-124,959,2,15159360,15160423 +5 - chr18 15164327 15164343 chr18,15163950,15164343,+,L1MCa,LINE,L1,2415,2818,-3503,15161536,15167846 -4 + chr18 15164427 15164467 chr18,15164427,15164852,+,(CTTC)n,Simple_repeat,Simple_repeat,1,430,0,15164427,15164852 -1 + chr18 21240698 21240783 chr18,21240698,21240783,-,L2b,LINE,L2,-19,3356,3267,21240679,21244049 +6 - chr18 21316878 21316904 chr18,21316759,21317062,-,AluSx,SINE,Alu,-8,304,1,21316751,21317062 -1 - chr18 21317462 21317604 chr18,21317318,21317604,+,AluJb,SINE,Alu,1,284,-28,21317318,21317632 +2 + chr18 21317701 21317795 chr18,21317701,21317830,+,MIRb,SINE,MIR,26,157,-111,21317676,21317941 +5 + chr18 21380312 21380468 chr18,21380312,21380468,-,MER117,DNA,hAT-Charlie,-38,159,2,21380274,21380469 +6 - chr18 21380543 21380675 chr18,21380543,21380763,+,MIRb,SINE,MIR,16,231,-37,21380528,21380800 -2 + chr18 21450883 21450981 chr18,21450793,21450981,-,L1ME4c,LINE,L1,-197,633,443,21450596,21451423 +4 - chr18 21633128 21633149 chr18,21632821,21633149,-,AluY,SINE,Alu,0,311,1,21632821,21633149 -2 - chr18 21661787 21661971 chr18,21661678,21661971,-,AluSp,SINE,Alu,-19,294,1,21661659,21661971 +5 - chr18 21661971 21662078 chr18,21661971,21662268,-,AluSx,SINE,Alu,-15,297,2,21661956,21662269 +2 - chr18 21662352 21662395 chr18,21662268,21662406,-,AluSx,SINE,Alu,-176,136,1,21662092,21662406 +1 - chr18 21673628 21673663 chr18,21673595,21673904,-,AluSx1,SINE,Alu,0,312,1,21673595,21673904 -1 - chr18 21682151 21682222 chr18,21682146,21682222,+,MIRb,SINE,MIR,150,205,-63,21681997,21682285 +2 + chr18 21682371 21682561 chr18,21682371,21682592,+,L2c,LINE,L2,3108,3337,-50,21679264,21682642 +5 + chr18 21828313 21828377 chr18,21828313,21828377,+,(ATTTTTC)n,Simple_repeat,Simple_repeat,1,64,0,21828313,21828377 -6 + chr18 21831240 21831255 chr18,21831240,21831255,+,(TTTTTTG)n,Simple_repeat,Simple_repeat,1,42,0,21831240,21831255 -6 + chr18 21831255 21831282 chr18,21831255,21831282,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,21831255,21831282 -6 + chr18 22010296 22010433 chr18,22010268,22010442,-,AluJr4,SINE,Alu,-11,301,131,22010257,22010572 -1 - chr18 22026024 22026110 chr18,22025828,22026136,-,AluJb,SINE,Alu,-7,305,1,22025821,22026136 -1 - chr18 22043357 22043419 chr18,22043357,22043419,+,U7,snRNA,snRNA,2,62,-1,22043356,22043420 +6 + chr18 22098371 22098486 chr18,22098171,22098486,-,AluJr,SINE,Alu,-6,306,1,22098165,22098486 -2 - chr18 22166945 22166974 chr18,22166945,22166974,+,(CAA)n,Simple_repeat,Simple_repeat,1,29,0,22166945,22166974 -6 + chr18 22168257 22168287 chr18,22168257,22168287,+,G-rich,Low_complexity,Low_complexity,1,32,0,22168257,22168287 -6 + chr18 22205038 22205142 chr18,22205038,22205142,+,X7A_LINE,LINE,CR1,177,266,-1,22204862,22205143 -6 + chr18 22213778 22213795 chr18,22213660,22213795,+,MIR3,SINE,MIR,49,185,-23,22213612,22213818 +1 + chr18 22213932 22214000 chr18,22213932,22214241,+,AluSx,SINE,Alu,2,311,-1,22213931,22214242 +4 + chr18 22227887 22227974 chr18,22227663,22227974,-,AluSp,SINE,Alu,0,313,1,22227663,22227974 -2 - chr18 22348179 22348252 chr18,22348179,22348294,-,MIR3,SINE,MIR,-6,202,81,22348173,22348374 +1 - chr18 22699519 22699643 chr18,22699519,22699643,-,MIRc,SINE,MIR,-120,148,17,22699399,22699659 +6 - chr18 22704821 22704920 chr18,22704811,22705259,-,Tigger4,DNA,TcMar-Tigger,-10,2721,2264,22704801,22707522 +3 - chr18 22730694 22730851 chr18,22730609,22730852,-,MIR,SINE,MIR,-7,255,16,22730602,22730867 +3 - chr18 22778119 22778173 chr18,22777794,22778586,-,LTR78,LTR,ERV1,-42,1262,499,22777752,22779084 +1 - chr18 22784365 22784631 chr18,22781449,22784631,-,L1PA10,LINE,L1,-3233,4908,1,22778216,22784631 +5 - chr18 22784645 22784666 chr18,22784645,22784765,+,L1MC5a,LINE,L1,3364,3486,-2660,22781282,22787425 -2 + chr18 22907638 22907721 chr18,22907289,22909439,-,L1M4,LINE,L1,-1429,4548,2181,22905860,22911619 +1 - chr18 22920762 22920844 chr18,22920721,22920844,+,MER5A,DNA,hAT-Charlie,1,126,-63,22920721,22920907 -4 + chr18 23957754 23957899 chr18,23957625,23957899,-,L1M5,LINE,L1,-314,5810,5545,23957311,23963443 +5 - chr18 23994312 23994329 chr18,23994312,23994329,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,23994312,23994329 -6 + chr18 24000389 24000555 chr18,24000169,24000555,+,MLT1B,LTR,ERVL-MaLR,23,382,-8,24000147,24000563 -4 + chr18 24012917 24013041 chr18,24012886,24013376,+,Zaphod,DNA,hAT-Tip100,76,619,-3412,24012811,24016788 -3 + chr18 24099223 24099320 chr18,24099157,24099497,-,MLT1A0,LTR,ERVL-MaLR,-11,354,1,24099146,24099497 +1 - chr18 24120992 24121003 chr18,24120533,24121079,-,L1MB3,LINE,L1,-7,6176,5616,24120526,24126694 +1 - chr18 24364787 24364871 chr18,24364739,24365042,+,AluJb,SINE,Alu,1,312,0,24364739,24365042 +1 + chr18 24367503 24367665 chr18,24367359,24367665,+,AluJb,SINE,Alu,1,303,-9,24367359,24367674 +2 + chr18 24367805 24367877 chr18,24367805,24367877,-,Kanga1c,DNA,TcMar-Tc2,-655,74,2,24367150,24367878 -6 - chr18 24367920 24367975 chr18,24367920,24367975,+,(TTATTTT)n,Simple_repeat,Simple_repeat,1,56,0,24367920,24367975 +6 + chr18 24402680 24402714 chr18,24402680,24402761,+,MLT1M,LTR,ERVL-MaLR,588,664,-8,24402093,24402769 +5 + chr18 24439541 24439638 chr18,24439384,24439662,+,AluY,SINE,Alu,30,307,-4,24439355,24439666 +5 + chr18 24489375 24489402 chr18,24489256,24489428,-,AluJb,SINE,Alu,-9,303,132,24489247,24489559 -1 - chr18 24490650 24490731 chr18,24490595,24490731,+,LTR88a,LTR,Gypsy?,272,411,-405,24490324,24491136 +2 + chr18 24516883 24517070 chr18,24516837,24517070,-,MLT1C,LTR,ERVL-MaLR,-1,466,207,24516836,24517276 +5 - chr18 24517070 24517108 chr18,24517070,24517108,+,(TG)n,Simple_repeat,Simple_repeat,1,38,0,24517070,24517108 -6 + chr18 24517108 24517300 chr18,24517108,24517300,-,MLT1C,LTR,ERVL-MaLR,-261,206,2,24516847,24517301 +6 - chr18 24517962 24518006 chr18,24517576,24518480,-,LTR28,LTR,ERV1,0,1020,1,24517576,24518480 +1 - chr18 24661388 24661950 chr18,24661388,24661950,-,L1ME4c,LINE,L1,0,830,274,24661388,24662223 -6 - chr18 24744800 24744878 chr18,24744588,24744979,+,MSTD,LTR,ERVL-MaLR,5,396,0,24744584,24744979 +5 + chr18 24766548 24766645 chr18,24766548,24766811,+,MLT1C,LTR,ERVL-MaLR,205,467,0,24766344,24766811 +5 + chr18 24927838 24928013 chr18,24927694,24928028,+,MLT1J2,LTR,ERVL-MaLR,71,424,-24,24927624,24928052 +3 + chr18 24928934 24929009 chr18,24928934,24929009,-,UCON1,Unknown,Unknown,-953,433,359,24927981,24929367 -6 - chr18 24987357 24987479 chr18,24987293,24987479,+,UCON25,Unknown,Unknown,55,242,-33,24987239,24987512 -4 + chr18 25055600 25055758 chr18,25055566,25055758,+,MER3,DNA,hAT-Charlie,10,201,-8,25055557,25055766 +1 + chr18 25201040 25201620 chr18,25201040,25201620,-,L1MEi,LINE,L1,-1620,592,5,25199420,25201624 +6 - chr18 25201784 25201969 chr18,25201784,25201969,+,MIRb,SINE,MIR,64,262,-6,25201721,25201975 -6 + chr18 25202213 25202490 chr18,25202213,25202490,+,MER2,DNA,TcMar-Tigger,2,344,-1,25202212,25202491 -6 + chr18 25202566 25202818 chr18,25202566,25202818,+,MamRep434,DNA,TcMar-Tigger,144,414,-12,25202423,25202830 -6 + chr18 26266009 26266074 chr18,26265890,26266074,-,AluSx1,SINE,Alu,-130,182,1,26265760,26266074 -1 - chr18 26266113 26266207 chr18,26266113,26266409,-,AluSp,SINE,Alu,-14,299,1,26266099,26266409 -4 - chr18 26266770 26266889 chr18,26266579,26266889,+,AluY,SINE,Alu,1,309,-2,26266579,26266891 +2 + chr18 26267070 26267197 chr18,26267070,26267197,-,Tigger15a,DNA,TcMar-Tigger,-395,320,189,26266675,26267385 -6 - chr18 26423149 26423211 chr18,26423149,26423211,+,(TTTC)n,Simple_repeat,Simple_repeat,1,63,0,26423149,26423211 +6 + chr18 26424948 26425022 chr18,26424887,26425022,-,MIRc,SINE,MIR,-75,193,61,26424812,26425082 -2 - chr18 26425881 26425966 chr18,26425863,26425966,-,MIRb,SINE,MIR,-73,195,92,26425790,26426057 -2 - chr18 26543093 26543131 chr18,26543093,26543131,+,L2b,LINE,L2,3337,3374,-1,26539757,26543132 -6 + chr18 26544544 26544688 chr18,26544544,26544688,+,Eulor5A,DNA?,DNA?,3,138,-178,26544542,26544866 -6 + chr18 26566058 26566126 chr18,26566058,26566126,+,L2c,LINE,L2,3301,3375,0,26562758,26566126 -6 + chr18 26566830 26566851 chr18,26566830,26566851,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,26566830,26566851 -6 + chr18 26687701 26687740 chr18,26687701,26687740,+,(TTTG)n,Simple_repeat,Simple_repeat,1,40,0,26687701,26687740 -6 + chr18 26688680 26688841 chr18,26688680,26688841,-,AluJo,SINE,Alu,-10,302,123,26688670,26688963 +6 - chr18 26688841 26689162 chr18,26688841,26689162,+,AluSx1,SINE,Alu,1,312,0,26688841,26689162 -6 + chr18 26689162 26689287 chr18,26689162,26689287,-,AluJo,SINE,Alu,-190,122,1,26688972,26689287 +6 - chr18 26689355 26689529 chr18,26689317,26689529,-,U3,snRNA,snRNA,-2,215,1,26689315,26689529 -2 - chr18 26689317 26689529 chr18,26689317,26689529,-,U3,snRNA,snRNA,-2,215,1,26689315,26689529 +6 - chr18 26689547 26689668 chr18,26689547,26689779,+,MIRb,SINE,MIR,8,256,-12,26689540,26689791 +5 + chr18 26689547 26689779 chr18,26689547,26689779,+,MIRb,SINE,MIR,8,256,-12,26689540,26689791 -5 + chr18 26823519 26823979 chr18,26823488,26824086,-,Tigger13a,DNA,TcMar-Tigger,-124,647,56,26823364,26824141 +1 - chr18 26892871 26892992 chr18,26892841,26893148,-,AluSx,SINE,Alu,-4,308,2,26892837,26893149 -3 - chr18 26930683 26930823 chr18,26930683,26930896,-,LTR84a,LTR,ERVL,-181,580,372,26930502,26931267 -5 - chr18 26933650 26933749 chr18,26933650,26934224,-,L2a,LINE,L2,-3,3423,2822,26933647,26937045 -4 - chr18 26934280 26934533 chr18,26934224,26934533,-,AluY,SINE,Alu,-2,309,1,26934222,26934533 -2 - chr18 26934533 26934664 chr18,26934533,26934664,-,L2a,LINE,L2,-598,2821,2675,26933935,26937338 -6 - chr18 27189003 27189093 chr18,27189003,27189093,+,MIR3,SINE,MIR,92,183,-25,27188912,27189118 +6 + chr18 27189907 27189965 chr18,27189907,27189965,+,L2a,LINE,L2,3363,3424,-2,27186545,27189967 +6 + chr18 27225785 27225961 chr18,27225785,27226169,+,MER48,LTR,ERV1,4,407,0,27225782,27226169 +4 + chr18 27243613 27243666 chr18,27243490,27243713,-,MIR,SINE,MIR,0,262,31,27243490,27243743 -3 - chr18 27336379 27337146 chr18,27336281,27337146,-,L1M2,LINE,L1,-1904,4239,3379,27334377,27340524 +5 - chr18 27344221 27344342 chr18,27344202,27344499,-,AluSz,SINE,Alu,-15,297,1,27344187,27344499 -3 - chr18 27397952 27397985 chr18,27397593,27398021,+,MLT2C2,LTR,ERVL,1,420,-44,27397593,27398065 +1 + chr18 27401615 27401844 chr18,27401615,27401844,+,MIRb,SINE,MIR,5,260,-2,27401611,27401846 +6 + chr18 27401875 27401904 chr18,27401875,27402026,-,MIRb,SINE,MIR,-76,192,47,27401799,27402072 -5 - chr18 27501679 27501865 chr18,27501509,27503762,+,L1MA2,LINE,L1,24,2245,-5320,27501486,27509082 -3 + chr18 27954519 27954627 chr18,27954376,27954684,+,MLT1I,LTR,ERVL-MaLR,71,380,-31,27954306,27954715 +1 + chr18 29278509 29278629 chr18,29277750,29278629,+,L2,LINE,L2,12,891,-2528,29277739,29281157 -5 + chr18 29278629 29278663 chr18,29278629,29279036,-,MSTB,LTR,ERVL-MaLR,-2,424,1,29278627,29279036 +2 - chr18 29281393 29281593 chr18,29281393,29281627,+,AluSx,SINE,Alu,72,311,-1,29281322,29281628 -2 + chr18 29361884 29361963 chr18,29361802,29362147,-,HERVIP10FH-int,LTR,ERV1,-7468,317,1,29354334,29362147 +1 - chr18 29537363 29537500 chr18,29537343,29537535,-,AluSx1,SINE,Alu,-18,294,103,29537325,29537637 -3 - chr18 29538239 29538350 chr18,29538121,29538350,-,MIRb,SINE,MIR,-3,265,17,29538118,29538366 -2 - chr18 29547995 29548241 chr18,29547800,29548603,+,MER21A,LTR,ERVL,13,931,0,29547788,29548603 +5 + chr18 30713302 30713440 chr18,30713302,30713524,+,MER34B-int,LTR,ERV1,41,273,-5083,30713262,30718607 +4 + chr18 30780006 30780287 chr18,30779419,30780287,-,L1PA5,LINE,L1,-2,6152,5288,30779417,30785574 -1 - chr18 30954820 30955108 chr18,30954771,30955213,-,MLT1C,LTR,ERVL-MaLR,-2,465,1,30954769,30955213 +5 - chr18 30980880 30980917 chr18,30980580,30980972,+,L1MB4,LINE,L1,14,428,-6179,30980567,30987151 -1 + chr18 31131913 31131979 chr18,31131913,31131979,+,MIR,SINE,MIR,88,154,-108,31131826,31132087 +6 + chr18 31131986 31132206 chr18,31131986,31132206,+,MLT1C,LTR,ERVL-MaLR,1,225,-242,31131986,31132448 +6 + chr18 31132225 31132395 chr18,31132225,31132395,+,MLT1C,LTR,ERVL-MaLR,277,455,-12,31131949,31132407 +6 + chr18 31132405 31132492 chr18,31132405,31132492,+,MIR,SINE,MIR,175,261,-1,31132231,31132493 +6 + chr18 31353900 31353936 chr18,31347968,31353996,-,L1PA2,LINE,L1,-1,6154,125,31347967,31354120 +5 - chr18 31353962 31353996 chr18,31347968,31353996,-,L1PA2,LINE,L1,-1,6154,125,31347967,31354120 +5 - chr18 31364149 31364285 chr18,31363885,31364336,-,LTR16C,LTR,ERVL,0,489,1,31363885,31364336 +3 - chr18 31401579 31401667 chr18,31401316,31401706,+,Helitron3Na_Mam,RC,Helitron,80,484,-2,31401237,31401708 -1 + chr18 31496645 31496852 chr18,31496467,31497030,+,LTR66,LTR,ERVL,1,610,0,31496467,31497030 -5 + chr18 31496971 31497030 chr18,31496467,31497030,+,LTR66,LTR,ERVL,1,610,0,31496467,31497030 -5 + chr18 31497178 31497195 chr18,31497178,31497371,-,MIRb,SINE,MIR,-8,260,55,31497170,31497425 +1 - chr18 31542146 31542225 chr18,31541811,31542225,-,MLT1J,LTR,ERVL-MaLR,-9,503,42,31541802,31542266 +5 - chr18 31543268 31543327 chr18,31543268,31543327,-,MLT1I,LTR,ERVL-MaLR,-385,164,98,31542883,31543424 +6 - chr18 31550038 31550143 chr18,31549801,31550143,-,MER34C_,LTR,ERV1,-191,394,44,31549610,31550186 +5 - chr18 31554642 31554715 chr18,31554562,31554774,+,LTR33,LTR,ERVL,1,211,-304,31554562,31555078 -3 + chr18 31556468 31556605 chr18,31556468,31556605,-,L2c,LINE,L2,-8,3379,3257,31556460,31559861 +6 - chr18 31556799 31556911 chr18,31556799,31557174,+,MSTB,LTR,ERVL-MaLR,1,380,-46,31556799,31557220 -1 + chr18 31686314 31686503 chr18,31686314,31686503,+,MIRb,SINE,MIR,40,241,-27,31686275,31686530 +6 + chr18 31844388 31844513 chr18,31844176,31844513,+,L1ME3A,LINE,L1,5817,6170,-3,31838360,31844516 +1 + chr18 31845048 31845178 chr18,31844980,31845196,+,AluYe5,SINE,Alu,1,298,-12,31844980,31845208 +5 + chr18 31895940 31896179 chr18,31895940,31896179,-,L2c,LINE,L2,-1,3386,3140,31895939,31899318 +6 - chr18 31942838 31942878 chr18,31942838,31942878,+,(CCGGC)n,Simple_repeat,Simple_repeat,1,42,0,31942838,31942878 +6 + chr18 31943293 31943331 chr18,31943293,31943331,+,(GCGGGG)n,Simple_repeat,Simple_repeat,1,38,0,31943293,31943331 +6 + chr18 31944008 31944087 chr18,31944008,31944087,-,Charlie2b,DNA,hAT-Charlie,-769,2013,1932,31943239,31946018 -6 - chr18 31944086 31944156 chr18,31944086,31944204,-,Charlie2b,DNA,hAT-Charlie,-2384,398,273,31941702,31944476 -5 - chr18 31983513 31983611 chr18,31983513,31983611,+,MER94,DNA,hAT-Blackjack,25,125,-9,31983489,31983620 +6 + chr18 31984229 31984520 chr18,31984229,31984520,-,AluSx,SINE,Alu,-20,292,1,31984209,31984520 -6 - chr18 31984545 31984759 chr18,31984545,31984759,-,MIRb,SINE,MIR,-13,255,24,31984532,31984782 -6 - chr18 31985192 31985315 chr18,31985192,31985315,+,MIRb,SINE,MIR,34,172,-96,31985159,31985411 +6 + chr18 31985445 31985791 chr18,31985445,31985791,+,MLT1A,LTR,ERVL-MaLR,5,370,-4,31985441,31985795 +6 + chr18 31985821 31986087 chr18,31985821,31986109,+,AluSp,SINE,Alu,15,305,-8,31985807,31986117 +5 + chr18 32031035 32031136 chr18,32030963,32031136,-,MSTD,LTR,ERVL-MaLR,-212,184,11,32030751,32031146 -1 - chr18 32031287 32031353 chr18,32031287,32031353,+,MIR3,SINE,MIR,81,148,-60,32031207,32031413 +6 + chr18 32091295 32091329 chr18,32091276,32091329,-,Alu,SINE,Alu,0,301,249,32091276,32091577 +5 - chr18 32091359 32091401 chr18,32091359,32091401,+,AluJo,SINE,Alu,243,284,-28,32091117,32091429 -6 + chr18 32091401 32091435 chr18,32091401,32091435,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,35,0,32091401,32091435 -6 + chr18 32122400 32122420 chr18,32122364,32122541,-,Charlie7,DNA,hAT-Charlie,-973,1639,1444,32121391,32123984 +5 - chr18 32124230 32124262 chr18,32124230,32124262,+,(TGCTTT)n,Simple_repeat,Simple_repeat,1,32,0,32124230,32124262 -6 + chr18 32124432 32124478 chr18,32124432,32124568,+,MER119,DNA,hAT-Charlie,456,583,0,32123977,32124568 -1 + chr18 32245946 32246136 chr18,32245880,32246181,-,AluSx,SINE,Alu,-1,311,1,32245879,32246181 +5 - chr18 32248756 32248799 chr18,32248511,32248799,-,AluSx1,SINE,Alu,0,312,1,32248511,32248799 +4 - chr18 32248799 32248844 chr18,32248799,32248844,-,L1PA8A,LINE,L1,-1369,4777,4735,32247430,32253578 +6 - chr18 32248967 32249032 chr18,32248967,32249181,+,L2c,LINE,L2,3178,3383,-4,32245790,32249185 -1 + chr18 32290321 32290340 chr18,32290321,32290438,+,L1MC4,LINE,L1,5174,5297,-849,32285148,32291287 +5 + chr18 32412541 32412571 chr18,32412541,32412571,+,(CCA)n,Simple_repeat,Simple_repeat,1,30,0,32412541,32412571 +6 + chr18 32581528 32581576 chr18,32581422,32581590,-,AluJb,SINE,Alu,-3,309,144,32581419,32581733 -1 - chr18 32772084 32772128 chr18,32772084,32772128,+,(CCCG)n,Simple_repeat,Simple_repeat,1,44,0,32772084,32772128 +6 + chr18 32773926 32773948 chr18,32773926,32773948,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,32773926,32773948 +6 + chr18 32774286 32774321 chr18,32774286,32774321,+,GA-rich,Low_complexity,Low_complexity,1,37,0,32774286,32774321 +6 + chr18 32834856 32835191 chr18,32834851,32835456,-,L2a,LINE,L2,-351,3068,2420,32834500,32837875 -1 - chr18 32837965 32838146 chr18,32837965,32838146,+,MIR3,SINE,MIR,11,205,-3,32837955,32838149 +6 + chr18 32847508 32847569 chr18,32847508,32847588,+,AmnSINE1,SINE,5S-Deu-L2,496,575,0,32847013,32847588 +4 + chr18 32855215 32855249 chr18,32855215,32855249,+,(AAAC)n,Simple_repeat,Simple_repeat,1,35,0,32855215,32855249 +6 + chr18 32912833 32912964 chr18,32912792,32913260,-,L2b,LINE,L2,0,3375,2933,32912792,32916192 -3 - chr18 32956634 32956700 chr18,32956554,32956700,+,MIRb,SINE,MIR,89,254,-14,32956466,32956714 +2 + chr18 33552123 33552516 chr18,33552077,33552516,-,L1MDa,LINE,L1,-6184,449,15,33545893,33552530 +5 - chr18 33552643 33552785 chr18,33552643,33552785,-,MIRb,SINE,MIR,0,268,127,33552643,33552911 +6 - chr18 33552785 33553108 chr18,33552785,33553108,+,AluSz6,SINE,Alu,2,308,-4,33552784,33553112 -6 + chr18 33553108 33553186 chr18,33553108,33553186,-,MIRb,SINE,MIR,-142,126,52,33552966,33553237 +6 - chr18 33553997 33554160 chr18,33553997,33554160,+,Charlie7,DNA,hAT-Charlie,5,161,-2451,33553993,33556611 -6 + chr18 33578112 33578181 chr18,33578112,33578181,+,(GC)n,Simple_repeat,Simple_repeat,1,71,0,33578112,33578181 -6 + chr18 34226070 34226327 chr18,34226070,34226327,-,MER112,DNA,hAT-Charlie,-2,259,1,34226068,34226327 -6 - chr18 34737840 34737880 chr18,34737840,34738182,-,L2c,LINE,L2,-63,3324,2973,34737777,34741154 +2 - chr18 34755458 34755474 chr18,34755367,34755474,+,Tigger16a,DNA,TcMar-Tigger,841,949,-8,34754527,34755482 -4 + chr18 34755557 34755635 chr18,34755557,34755666,+,MIRc,SINE,MIR,104,217,-51,34755454,34755717 -2 + chr18 34759933 34759982 chr18,34759678,34759982,-,AluSz,SINE,Alu,-9,303,1,34759669,34759982 +4 - chr18 34767543 34767663 chr18,34767461,34767854,-,MSTC,LTR,ERVL-MaLR,0,428,1,34767461,34767854 +1 - chr18 34892013 34892158 chr18,34891963,34892158,+,L1MA10,LINE,L1,6140,6331,-3,34885824,34892161 -5 + chr18 34893160 34893273 chr18,34893127,34893593,-,L1M4c,LINE,L1,-4543,1841,1365,34888584,34894957 +1 - chr18 34902853 34902885 chr18,34902789,34903514,+,HAL1,LINE,L1,118,935,-1572,34902672,34905086 -1 + chr18 35082009 35082242 chr18,35082008,35082312,+,AluYa5,SINE,Alu,1,304,-7,35082008,35082319 +5 + chr18 35257040 35257074 chr18,35256778,35257074,-,AluJr,SINE,Alu,-17,295,2,35256761,35257075 -1 - chr18 35257274 35257342 chr18,35257274,35257342,+,LTR16A1,LTR,ERVL,22,83,-373,35257253,35257715 +6 + chr18 35257342 35257512 chr18,35257342,35257676,+,MLT1A0,LTR,ERVL-MaLR,5,365,0,35257338,35257676 +5 + chr18 35269174 35269211 chr18,35269174,35269211,-,MER3,DNA,hAT-Charlie,-5,204,168,35269169,35269378 -6 - chr18 35269212 35269636 chr18,35269212,35269636,+,LTR47A2,LTR,ERVL,1,423,-9,35269212,35269645 +6 + chr18 35269633 35269749 chr18,35269633,35269749,+,MER3,DNA,hAT-Charlie,94,209,0,35269540,35269749 +6 + chr18 35270125 35270238 chr18,35270125,35270293,+,L1MC3,LINE,L1,7588,7735,-50,35262538,35270343 +5 + chr18 35280867 35281081 chr18,35280478,35281081,+,Charlie24,DNA,hAT-Charlie,1833,2450,0,35278646,35281081 -5 + chr18 35281507 35282096 chr18,35281507,35282096,-,LTR87,LTR,ERVL?,-2,622,7,35281505,35282102 +6 - chr18 35282136 35282441 chr18,35282136,35282441,+,ERVL-E-int,LTR,ERVL,5343,5667,0,35276794,35282441 -6 + chr18 35282443 35283043 chr18,35282443,35283043,+,MLT2F,LTR,ERVL,3,663,0,35282441,35283043 -6 + chr18 35283043 35283100 chr18,35283043,35283100,+,L1MC,LINE,L1,2378,2439,-3707,35280666,35286807 -6 + chr18 35283100 35283354 chr18,35283100,35283354,+,AluSx,SINE,Alu,1,246,-66,35283100,35283420 -6 + chr18 35283354 35285138 chr18,35283354,35285138,-,MER52A,LTR,ERV1,0,1755,1,35283354,35285138 +6 - chr18 35285142 35285177 chr18,35285142,35285200,+,Alu,SINE,Alu,246,301,0,35284897,35285200 -2 + chr18 35317396 35317602 chr18,35317301,35317602,-,AluJb,SINE,Alu,-10,302,2,35317291,35317603 -1 - chr18 35317748 35317848 chr18,35317748,35317894,+,LTR35B,LTR,ERV1,391,530,-17,35317358,35317911 +5 + chr18 35404002 35404949 chr18,35404002,35404949,-,L1PA5,LINE,L1,-1,6153,5203,35404001,35410151 +6 - chr18 35405011 35406508 chr18,35405011,35406508,+,L1MB2,LINE,L1,4664,6171,0,35400348,35406508 -6 + chr18 35443869 35444022 chr18,35443826,35444255,-,MLT1A,LTR,ERVL-MaLR,-4,370,1,35443822,35444255 +5 - chr18 35445743 35445900 chr18,35445631,35445937,+,AluSz,SINE,Alu,1,312,0,35445631,35445937 -5 + chr18 35447485 35447542 chr18,35447433,35447694,-,Tigger10,DNA,TcMar-Tigger,-32,1812,1537,35447401,35449230 +3 - chr18 35466801 35466967 chr18,35466801,35466967,-,MER5A,DNA,hAT-Charlie,0,189,15,35466801,35466981 +6 - chr18 35467057 35467088 chr18,35467057,35467118,-,MER5A,DNA,hAT-Charlie,-63,126,64,35466994,35467181 +1 - chr18 35483547 35483605 chr18,35483547,35483605,+,L2b,LINE,L2,3295,3354,-21,35480253,35483626 -6 + chr18 35596923 35597039 chr18,35596923,35597039,-,MLT1N2,LTR,ERVL-MaLR,-11,551,433,35596912,35597471 -6 - chr18 35597532 35597598 chr18,35597532,35597598,-,MIRb,SINE,MIR,-34,234,160,35597498,35597757 -6 - chr18 35716614 35716996 chr18,35716614,35716996,+,L1MEg,LINE,L1,1298,1624,-5116,35715317,35722112 +6 + chr18 35717024 35717219 chr18,35717024,35717219,-,MLT1C,LTR,ERVL-MaLR,-173,294,88,35716851,35717306 -6 - chr18 35717224 35717647 chr18,35717224,35717647,+,MLT1C,LTR,ERVL-MaLR,6,467,0,35717219,35717647 +6 + chr18 35717723 35717897 chr18,35717723,35717897,+,L1M4,LINE,L1,3548,3723,-2423,35714176,35720320 +6 + chr18 35717906 35717978 chr18,35717906,35720285,+,Tigger1,DNA,TcMar-Tigger,24,2418,0,35717883,35720285 +5 + chr18 35951803 35952037 chr18,35951760,35952328,-,MLT1E2,LTR,ERVL-MaLR,-4,623,3,35951756,35952330 +5 - chr18 35952678 35952799 chr18,35952520,35952820,+,AluSz,SINE,Alu,1,299,-13,35952520,35952833 -3 + chr18 35965971 35966118 chr18,35965971,35966122,-,MIR3,SINE,MIR,-51,157,14,35965920,35966135 +1 - chr18 35972151 35972182 chr18,35971354,35972182,+,L1MB5,LINE,L1,5258,6174,0,35966097,35972182 +1 + chr18 35972699 35972728 chr18,35972699,35972728,+,(GCG)n,Simple_repeat,Simple_repeat,1,29,0,35972699,35972728 +6 + chr18 35973080 35973595 chr18,35973080,35973595,+,L2-1_AMi,LINE,L2,141,657,-578,35972940,35974173 +6 + chr18 35973602 35973639 chr18,35973602,35973639,+,L2a,LINE,L2,2610,2657,-762,35970993,35974401 +6 + chr18 35973639 35973892 chr18,35973639,35973892,+,AluSz6,SINE,Alu,2,253,-59,35973638,35973951 +6 + chr18 35973892 35973916 chr18,35973892,35973954,+,L2a,LINE,L2,2658,2719,-700,35971235,35974654 +5 + chr18 36179996 36180390 chr18,36179946,36180408,-,MLT1J,LTR,ERVL-MaLR,0,512,35,36179946,36180442 +5 - chr18 36189927 36189991 chr18,36189927,36189991,-,MIR,SINE,MIR,-190,72,8,36189737,36189998 -6 - chr18 36190055 36190129 chr18,36190055,36190129,-,Tigger10,DNA,TcMar-Tigger,-199,1645,1572,36189856,36191700 -6 - chr18 36903611 36903688 chr18,36903582,36903765,+,MIRb,SINE,MIR,86,265,-3,36903497,36903768 -3 + chr18 36921061 36921207 chr18,36920542,36921209,-,L1MEc,LINE,L1,-5675,725,32,36914867,36921240 +3 - chr18 36923774 36923814 chr18,36923688,36923876,-,MER3,DNA,hAT-Charlie,0,209,3,36923688,36923878 +1 - chr18 37234119 37234898 chr18,37234119,37234898,-,L1MC4,LINE,L1,-1,8041,7208,37234118,37242105 +5 - chr18 37235450 37235535 chr18,37235450,37235535,-,L2b,LINE,L2,-2,3385,3293,37235448,37238827 +6 - chr18 37235807 37235848 chr18,37235807,37235848,-,MIR3,SINE,MIR,-59,149,108,37235748,37235955 +6 - chr18 37236001 37236181 chr18,37236001,37236181,+,MIRb,SINE,MIR,2,230,-38,37236000,37236219 -6 + chr18 37247315 37247340 chr18,37247315,37247340,+,(AT)n,Simple_repeat,Simple_repeat,1,25,0,37247315,37247340 +6 + chr18 37247339 37247367 chr18,37247339,37247367,+,(AG)n,Simple_repeat,Simple_repeat,1,30,0,37247339,37247367 +6 + chr18 37247366 37247426 chr18,37247366,37247426,+,G-rich,Low_complexity,Low_complexity,1,60,0,37247366,37247426 +6 + chr18 37275672 37275728 chr18,37275672,37275830,+,L2b,LINE,L2,3026,3191,-184,37272647,37276014 +4 + chr18 37275813 37275830 chr18,37275672,37275830,+,L2b,LINE,L2,3026,3191,-184,37272647,37276014 +2 + chr18 37276290 37276400 chr18,37276290,37276793,+,MLT1G3,LTR,ERVL-MaLR,43,595,0,37276248,37276793 +5 + chr18 37276522 37276572 chr18,37276290,37276793,+,MLT1G3,LTR,ERVL-MaLR,43,595,0,37276248,37276793 +5 + chr18 37305588 37305735 chr18,37305588,37305735,+,MIRb,SINE,MIR,6,165,-103,37305583,37305838 -6 + chr18 37473872 37473977 chr18,37473872,37473986,+,MLT1J,LTR,ERVL-MaLR,104,272,-338,37473769,37474324 -1 + chr18 38659249 38659326 chr18,38659174,38659376,-,CR1-12_AMi,LINE,CR1,-197,417,233,38658977,38659608 +5 - chr18 38660738 38660815 chr18,38660373,38660895,+,MLT1F1,LTR,ERVL-MaLR,1,569,0,38660373,38660895 -1 + chr18 38670878 38671063 chr18,38670587,38671063,+,MER89,LTR,ERV1,1,559,0,38670587,38671063 -1 + chr18 39207028 39207197 chr18,39207028,39207197,+,MIR,SINE,MIR,43,252,-10,39206986,39207207 -6 + chr18 39207237 39207300 chr18,39207237,39207300,+,(CTTTTT)n,Simple_repeat,Simple_repeat,1,63,0,39207237,39207300 -6 + chr18 39207330 39207547 chr18,39207330,39207547,-,MIR,SINE,MIR,-34,228,2,39207296,39207548 +6 - chr18 39208554 39208652 chr18,39208554,39208652,-,L3,LINE,CR1,-353,3746,3650,39208201,39212301 +6 - chr18 39208674 39208746 chr18,39208674,39208746,-,L3,LINE,CR1,-2242,1857,1788,39206432,39210533 +6 - chr18 39214128 39214269 chr18,39213990,39214311,-,ERVL-B4-int,LTR,ERVL,-584,5130,4808,39213406,39219118 +3 - chr18 39800101 39800318 chr18,39800101,39800435,-,MER61A,LTR,ERV1,0,341,1,39800101,39800435 +1 - chr18 39841174 39841267 chr18,39841041,39841267,-,MIRc,SINE,MIR,-43,225,4,39840998,39841270 +5 - chr18 39921799 39921829 chr18,39921720,39922344,+,L1MEd,LINE,L1,772,1452,-5651,39920949,39927995 -3 + chr18 39924654 39924840 chr18,39924369,39930434,+,L1PA2,LINE,L1,124,6153,-2,39924246,39930436 -1 + chr18 40063522 40063548 chr18,40063522,40063548,+,(AAC)n,Simple_repeat,Simple_repeat,1,27,0,40063522,40063548 -6 + chr18 40064728 40064770 chr18,40064728,40064770,+,(ATGT)n,Simple_repeat,Simple_repeat,1,42,0,40064728,40064770 -6 + chr18 40065030 40065069 chr18,40065030,40065069,+,(AATG)n,Simple_repeat,Simple_repeat,1,39,0,40065030,40065069 -6 + chr18 40065722 40065840 chr18,40065722,40065840,+,L2b,LINE,L2,3229,3340,-35,40062494,40065875 -6 + chr18 40065970 40066001 chr18,40065970,40066001,+,(ACAA)n,Simple_repeat,Simple_repeat,1,31,0,40065970,40066001 -6 + chr18 40066286 40066314 chr18,40066274,40066314,+,(TCTCTG)n,Simple_repeat,Simple_repeat,1,42,0,40066274,40066314 +1 + chr18 40066274 40066314 chr18,40066274,40066314,+,(TCTCTG)n,Simple_repeat,Simple_repeat,1,42,0,40066274,40066314 -1 + chr18 40070359 40070419 chr18,40070159,40070538,+,THE1C,LTR,ERVL-MaLR,1,375,0,40070159,40070538 +3 + chr18 41465963 41465989 chr18,41465963,41465989,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,41465963,41465989 -6 + chr18 41466399 41466431 chr18,41466399,41466431,+,(TTGTTT)n,Simple_repeat,Simple_repeat,1,32,0,41466399,41466431 -6 + chr18 41466830 41466863 chr18,41466830,41466863,+,L3,LINE,CR1,3599,3630,-469,41463232,41467332 -6 + chr18 41480271 41480340 chr18,41479596,41480340,-,L2c,LINE,L2,-1487,1932,1104,41478109,41481443 +5 - chr18 41481934 41481957 chr18,41481934,41482041,+,MIRb,SINE,MIR,118,223,-45,41481817,41482086 -2 + chr18 41501004 41501077 chr18,41500978,41501077,+,MIR3,SINE,MIR,83,180,-28,41500896,41501105 -5 + chr18 41501077 41501094 chr18,41501077,41501094,+,(CA)n,Simple_repeat,Simple_repeat,1,17,0,41501077,41501094 -6 + chr18 41513688 41513768 chr18,41513446,41513768,-,UCON65,Unknown,Unknown,-7,451,132,41513439,41513899 +5 - chr18 41516214 41516555 chr18,41516214,41516619,+,MLT2F,LTR,ERVL,1,431,-232,41516214,41516851 -5 + chr18 41525355 41525434 chr18,41525224,41525434,-,MER63A,DNA,hAT-Blackjack,-6,204,4,41525218,41525437 +4 - chr18 41594353 41594468 chr18,41594353,41594622,+,AluJo,SINE,Alu,1,259,-53,41594353,41594675 -2 + chr18 41632000 41632185 chr18,41631742,41637769,+,L1PA2,LINE,L1,127,6151,-4,41631616,41637773 -1 + chr18 42159347 42159477 chr18,42159347,42159550,-,MIR3,SINE,MIR,0,208,5,42159347,42159554 -4 - chr18 42186668 42186762 chr18,42186473,42186845,+,THE1D,LTR,ERVL-MaLR,1,381,0,42186473,42186845 +1 + chr18 42212364 42212526 chr18,42212326,42212740,+,Eulor8,DNA,TcMar?,107,535,-27,42212220,42212767 +3 + chr18 42233005 42233020 chr18,42232703,42233020,-,Tigger15a,DNA,TcMar-Tigger,-51,664,321,42232652,42233340 -2 - chr18 42233085 42233194 chr18,42233085,42233194,-,MER94,DNA,hAT-Blackjack,0,134,1,42233085,42233194 -6 - chr18 42233201 42233327 chr18,42233201,42233368,+,MIRb,SINE,MIR,55,237,-31,42233147,42233399 +5 + chr18 42290006 42290068 chr18,42290006,42290068,-,L2a,LINE,L2,0,3426,3363,42290006,42293430 -6 - chr18 42337158 42337296 chr18,42336228,42337843,-,THE1D-int,LTR,ERVL-MaLR,0,1631,1,42336228,42337843 -5 - chr18 42396138 42396267 chr18,42396138,42396267,+,MLT1L,LTR,ERVL-MaLR,460,589,-6,42395679,42396273 +6 + chr18 42453932 42454086 chr18,42453474,42454086,-,L2c,LINE,L2,-2493,926,315,42450981,42454400 -2 - chr18 42457517 42457817 chr18,42457517,42457817,-,AluSx,SINE,Alu,-12,300,1,42457505,42457817 -6 - chr18 42458206 42458236 chr18,42458206,42458236,+,A-rich,Low_complexity,Low_complexity,1,30,0,42458206,42458236 +6 + chr18 42458880 42458917 chr18,42458880,42458917,+,(TGA)n,Simple_repeat,Simple_repeat,1,38,0,42458880,42458917 +6 + chr18 42458942 42458999 chr18,42458942,42458999,+,(AT)n,Simple_repeat,Simple_repeat,1,58,0,42458942,42458999 +6 + chr18 42461840 42462185 chr18,42461840,42462228,+,LTR7B,LTR,ERV1,1,464,0,42461840,42462228 +5 + chr18 42516119 42516300 chr18,42516042,42516300,-,MLT1A1,LTR,ERVL-MaLR,0,408,151,42516042,42516450 -2 - chr18 42516300 42516609 chr18,42516300,42516609,-,AluSx3,SINE,Alu,-1,310,1,42516299,42516609 -6 - chr18 42516609 42516763 chr18,42516609,42516763,-,MLT1A1,LTR,ERVL-MaLR,-258,150,1,42516351,42516763 -6 - chr18 42517257 42518348 chr18,42517257,42518348,+,Tigger3b,DNA,TcMar-Tigger,1,1142,-89,42517257,42518437 +6 + chr18 42518318 42518408 chr18,42518318,42518408,+,Tigger3c,DNA,TcMar-Tigger,423,513,-89,42517896,42518497 +6 + chr18 42518378 42518557 chr18,42518378,42518557,+,Tigger3c,DNA,TcMar-Tigger,423,601,-1,42517956,42518558 +6 + chr18 42518575 42518897 chr18,42518575,42518897,+,L2c,LINE,L2,3020,3343,-44,42515556,42518941 +6 + chr18 42678848 42678967 chr18,42678828,42679122,-,AluSp,SINE,Alu,-18,295,1,42678810,42679122 -3 - chr18 42682230 42682314 chr18,42681885,42682507,+,LTR84a,LTR,ERVL,55,691,-66,42681831,42682573 +3 + chr18 43499173 43499836 chr18,43494452,43500000,+,HERVL-int,LTR,ERVL,4,5572,-82,43494449,43500082 +5 + chr18 44323436 44323532 chr18,44323111,44323532,-,MLT1J,LTR,ERVL-MaLR,0,512,39,44323111,44323570 +5 - chr18 44326354 44326395 chr18,44326354,44326395,+,(TCCTGTT)n,Simple_repeat,Simple_repeat,1,42,0,44326354,44326395 -6 + chr18 44373285 44373435 chr18,44371655,44373435,-,L1P2,LINE,L1,-3467,4114,2221,44368188,44375655 +4 - chr18 44373432 44373483 chr18,44373432,44374032,-,L1P2,LINE,L1,-6150,831,175,44367282,44374206 +2 - chr18 44676946 44677092 chr18,44676946,44677092,+,(TA)n,Simple_repeat,Simple_repeat,1,151,0,44676946,44677092 -6 + chr18 44677095 44677422 chr18,44677095,44677422,-,Tigger3a,DNA,TcMar-Tigger,0,348,5,44677095,44677426 +6 - chr18 44677423 44677450 chr18,44677423,44677450,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,44677423,44677450 -6 + chr18 44677494 44677524 chr18,44677494,44677524,+,(TCCTC)n,Simple_repeat,Simple_repeat,1,32,0,44677494,44677524 -6 + chr18 44677564 44677709 chr18,44677564,44677709,+,MIR3,SINE,MIR,30,202,-6,44677535,44677715 -6 + chr18 44679682 44679708 chr18,44679682,44679708,+,(GCG)n,Simple_repeat,Simple_repeat,1,26,0,44679682,44679708 -6 + chr18 44986109 44986891 chr18,44986080,44986891,-,Tigger3b,DNA,TcMar-Tigger,-66,1165,299,44986014,44987189 -1 - chr18 44986891 44986957 chr18,44986891,44986957,+,(ATAGT)n,Simple_repeat,Simple_repeat,1,67,0,44986891,44986957 +6 + chr18 44986957 44987247 chr18,44986957,44987247,-,Tigger3b,DNA,TcMar-Tigger,-933,298,2,44986024,44987248 -6 - chr18 44987442 44987618 chr18,44987442,44987618,-,MARNA,DNA,TcMar-Mariner,-136,450,252,44987306,44987869 -6 - chr18 44987848 44987910 chr18,44987848,44987910,+,(TATA)n,Simple_repeat,Simple_repeat,1,62,0,44987848,44987910 +6 + chr18 44988013 44988125 chr18,44988013,44988125,-,Charlie24,DNA,hAT-Charlie,-1,2449,2348,44988012,44990472 -6 - chr18 44988920 44989203 chr18,44988920,44989632,+,L1ME3E,LINE,L1,571,1318,-5785,44988350,44995417 +5 + chr18 45179886 45179978 chr18,45179863,45180175,+,AluJb,SINE,Alu,1,309,-3,45179863,45180178 -3 + chr18 45482497 45482607 chr18,45482327,45482868,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,45482327,45482868 +3 - chr18 45485145 45485177 chr18,45485059,45485177,-,MIRc,SINE,MIR,-46,222,104,45485013,45485280 -2 - chr18 45489907 45489945 chr18,45489842,45490035,-,MIRc,SINE,MIR,-8,260,47,45489834,45490081 -3 - chr18 45492062 45492129 chr18,45491924,45492273,-,MLT1J,LTR,ERVL-MaLR,-52,460,114,45491872,45492386 -3 - chr18 45515443 45515456 chr18,45515318,45515456,+,MIRb,SINE,MIR,15,152,-116,45515304,45515572 +2 + chr18 45528011 45528144 chr18,45528011,45528144,-,MER91A,DNA,hAT-Tip100,-1,195,50,45528010,45528193 -6 - chr18 45528577 45528607 chr18,45528577,45528607,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,45528577,45528607 +6 + chr18 45528647 45528716 chr18,45528647,45528716,-,L2c,LINE,L2,-34,3353,3283,45528613,45531998 -6 - chr18 45528805 45529187 chr18,45528805,45529187,+,MLT1H,LTR,ERVL-MaLR,79,476,-13,45528727,45529200 +6 + chr18 45550077 45550140 chr18,45550077,45550140,+,X7A_LINE,LINE,CR1,68,131,-136,45550010,45550276 +6 + chr18 45646275 45646378 chr18,45646275,45646378,-,L3,LINE,CR1,-7,4092,3982,45646268,45650359 -6 - chr18 45647187 45647527 chr18,45647187,45647527,-,L1M5,LINE,L1,-2660,3486,3133,45644527,45650659 -6 - chr18 45647601 45647661 chr18,45647601,45647661,-,L1PB,LINE,L1,-3124,3022,2963,45644477,45650623 -6 - chr18 45647680 45647937 chr18,45647680,45648195,-,L1M5,LINE,L1,-3201,2945,2375,45644479,45650569 -5 - chr18 45692395 45692440 chr18,45691754,45694149,+,L1PA13,LINE,L1,1042,3442,-3324,45690713,45697473 -3 + chr18 45731438 45731655 chr18,45731438,45731716,-,MamRep434,DNA,TcMar-Tigger,-118,308,1,45731320,45731716 +2 - chr18 46386305 46386513 chr18,46386305,46386513,-,MIRc,SINE,MIR,-10,258,47,46386295,46386559 -6 - chr18 46386541 46386607 chr18,46386541,46386607,+,(CCAT)n,Simple_repeat,Simple_repeat,1,67,0,46386541,46386607 +6 + chr18 46386609 46386716 chr18,46386609,46386716,-,L2a,LINE,L2,-14,3412,3298,46386595,46390013 -6 - chr18 46759724 46759742 chr18,46759433,46759742,-,L1ME3A,LINE,L1,-9,6164,5839,46759424,46765580 -1 - chr18 46759742 46760334 chr18,46759742,46760334,+,MLT1E3,LTR,ERVL-MaLR,1,623,-1,46759742,46760335 +6 + chr18 46760334 46760586 chr18,46760334,46760586,-,L1ME3A,LINE,L1,-335,5838,5566,46759999,46766151 -5 - chr18 46761744 46761868 chr18,46761744,46761868,-,L3b,LINE,CR1,-242,4990,4857,46761502,46766724 -6 - chr18 46762483 46762794 chr18,46762483,46762794,-,L2b,LINE,L2,-1,3374,3055,46762482,46765848 -6 - chr18 46762896 46763014 chr18,46762896,46763014,-,L2b,LINE,L2,-560,2859,2741,46762336,46765754 -6 - chr18 46763903 46764032 chr18,46763903,46764032,-,MER58A,DNA,hAT-Charlie,-9,215,80,46763894,46764111 -6 - chr18 46764266 46764408 chr18,46764266,46764451,+,MamSINE1,SINE,tRNA-RTE,96,286,-4,46764171,46764455 +5 + chr18 46786780 46786937 chr18,46786780,46786937,+,L1M5,LINE,L1,4688,4847,-1299,46782093,46788236 -6 + chr18 46787410 46787514 chr18,46787410,46787514,-,MER5B,DNA,hAT-Charlie,-62,116,6,46787348,46787519 +6 - chr18 46788520 46788648 chr18,46788520,46788648,+,L2b,LINE,L2,3233,3364,-11,46785288,46788659 -6 + chr18 46788649 46788901 chr18,46788649,46788901,+,AluSg,SINE,Alu,44,295,-15,46788606,46788916 -6 + chr18 46789030 46789141 chr18,46789030,46789141,+,Arthur1B,DNA,hAT-Tip100,658,777,-448,46788373,46789589 -6 + chr18 46789141 46789297 chr18,46789141,46789546,+,MER51B,LTR,ERV1,1,377,0,46789141,46789546 -1 + chr18 46803224 46803290 chr18,46803205,46803290,+,Kanga1,DNA,TcMar-Tc2,1638,1745,0,46801568,46803290 -5 + chr18 46803343 46803469 chr18,46803343,46803469,+,L2c,LINE,L2,2062,2203,-1216,46801282,46804685 -6 + chr18 46803549 46803672 chr18,46803549,46803672,+,LTR86C,LTR,ERVL,2,130,-491,46803548,46804163 -6 + chr18 46803702 46803882 chr18,46803702,46803882,+,LTR86C,LTR,ERVL,211,408,-213,46803492,46804095 -6 + chr18 46915109 46915287 chr18,46915109,46915287,+,MIR,SINE,MIR,20,241,-21,46915090,46915308 -6 + chr18 46915470 46915601 chr18,46915470,46915601,+,MLT1O,LTR,ERVL-MaLR,210,360,-182,46915261,46915783 -6 + chr18 47105946 47106018 chr18,47105909,47106018,-,UCON55,DNA,TcMar-Tigger,-19,173,59,47105890,47106076 -1 - chr18 47107072 47107090 chr18,47107072,47107090,+,(TCA)n,Simple_repeat,Simple_repeat,1,18,0,47107072,47107090 +6 + chr18 47107099 47107264 chr18,47107099,47107264,-,MIR,SINE,MIR,-21,241,76,47107078,47107339 -6 - chr18 47107874 47108062 chr18,47107874,47108062,+,MER123,DNA?,DNA?,52,267,0,47107823,47108062 +5 + chr18 47285725 47285797 chr18,47285505,47285878,+,THE1D,LTR,ERVL-MaLR,1,380,-1,47285505,47285879 +1 + chr18 47501312 47501500 chr18,47501312,47501500,+,MIR3,SINE,MIR,3,195,-13,47501310,47501513 +6 + chr18 47502193 47502340 chr18,47502193,47502340,+,LFSINE_Vert,SINE,tRNA,6,170,-289,47502188,47502629 +6 + chr18 47502554 47502722 chr18,47502554,47502722,+,MER5B,DNA,hAT-Charlie,2,176,-2,47502553,47502724 +6 + chr18 47502848 47502930 chr18,47502848,47502930,-,L2a,LINE,L2,-24,3402,3288,47502824,47506217 -6 - chr18 47503072 47503106 chr18,47503072,47503353,-,MER33,DNA,hAT-Charlie,0,324,36,47503072,47503388 -5 - chr18 47545525 47545653 chr18,47545525,47545828,-,L2b,LINE,L2,-1,3374,3043,47545524,47548870 -4 - chr18 47574750 47574882 chr18,47574750,47574882,+,L2c,LINE,L2,3258,3385,-2,47571493,47574884 +6 + chr18 47582675 47582780 chr18,47582560,47582780,-,MER20,DNA,hAT-Charlie,-1,218,1,47582559,47582780 -2 - chr18 47594268 47594302 chr18,47594268,47594302,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,47594268,47594302 +6 + chr18 47878295 47878325 chr18,47878161,47878325,-,Charlie15b,DNA,hAT-Charlie,-651,410,228,47877510,47878552 -1 - chr18 47878431 47878493 chr18,47878431,47878650,+,AluJo,SINE,Alu,86,306,-6,47878346,47878656 +4 + chr18 47882362 47882444 chr18,47882213,47882495,-,AluJo,SINE,Alu,-30,282,2,47882183,47882496 -5 - chr18 48147634 48147912 chr18,48147619,48147912,-,AluSx,SINE,Alu,-16,296,2,48147603,48147913 +5 - chr18 48147912 48148016 chr18,48147912,48148016,+,MER92-int,LTR,ERV1,3507,3598,-1620,48144406,48149636 -6 + chr18 48148016 48148308 chr18,48148016,48148308,-,AluSx1,SINE,Alu,-32,280,1,48147984,48148308 +6 - chr18 48148308 48149026 chr18,48148308,48149026,+,MER92-int,LTR,ERV1,3599,4369,-567,48144710,48149593 -6 + chr18 48149126 48149216 chr18,48149126,48149216,+,(TG)n,Simple_repeat,Simple_repeat,1,90,0,48149126,48149216 -6 + chr18 48149597 48149683 chr18,48149597,48149683,-,MamSINE1,SINE,tRNA-RTE,-160,130,44,48149437,48149726 +6 - chr18 48149749 48149793 chr18,48149749,48149793,-,MIRb,SINE,MIR,-35,233,195,48149714,48149987 +6 - chr18 48149793 48150026 chr18,48149793,48150103,-,AluSz,SINE,Alu,-2,310,1,48149791,48150103 +2 - chr18 48150385 48150601 chr18,48150300,48150601,+,AluSx,SINE,Alu,2,302,-10,48150299,48150611 -4 + chr18 48252301 48252505 chr18,48252167,48252505,+,MIR3,SINE,MIR,1,234,-34,48252167,48252539 +1 + chr18 48564795 48564918 chr18,48564616,48564918,-,AluJb,SINE,Alu,-10,302,1,48564606,48564918 -1 - chr18 48565601 48565733 chr18,48565601,48565733,+,MIR,SINE,MIR,111,243,-19,48565491,48565752 +6 + chr18 48566252 48566354 chr18,48566252,48566354,-,L2a,LINE,L2,0,3426,3309,48566252,48569662 -6 - chr18 48567012 48567121 chr18,48567012,48567121,-,L2a,LINE,L2,-2,3424,3317,48567010,48570437 -6 - chr18 48567605 48567648 chr18,48567605,48567648,-,L2a,LINE,L2,-202,3173,3131,48567403,48570778 -6 - chr18 48567935 48568155 chr18,48567935,48568155,+,MIRc,SINE,MIR,22,254,-14,48567914,48568169 +6 + chr18 48568330 48568342 chr18,48568330,48568363,-,MIR,SINE,MIR,-72,190,158,48568258,48568520 -5 - chr18 48661840 48661871 chr18,48661777,48661871,-,MIR3,SINE,MIR,-101,167,82,48661676,48661952 +5 - chr18 48662419 48662462 chr18,48662419,48662462,-,MIRc,SINE,MIR,-142,126,84,48662277,48662545 +6 - chr18 48673575 48673676 chr18,48673478,48673716,-,MLT1I,LTR,ERVL-MaLR,-8,403,175,48673470,48673890 +5 - chr18 48683010 48683152 chr18,48683010,48683203,-,Tigger19a,DNA,TcMar-Tigger,-99,224,26,48682911,48683228 +2 - chr18 48755843 48756291 chr18,48755843,48756291,+,L1MDa,LINE,L1,76,640,-5993,48755768,48762284 +6 + chr18 48826051 48826165 chr18,48825995,48826165,+,MIRb,SINE,MIR,26,192,-76,48825970,48826241 -5 + chr18 49013106 49013201 chr18,49012944,49013201,-,L1ME3B,LINE,L1,-9,6233,5975,49012935,49019175 -1 - chr18 49013801 49013819 chr18,49013801,49013922,-,MIRb,SINE,MIR,-99,169,40,49013702,49013961 -5 - chr18 49026043 49026144 chr18,49026043,49026144,-,L2b,LINE,L2,-161,3214,3119,49025882,49029262 -6 - chr18 49040000 49040069 chr18,49038124,49040120,-,L1ME3B,LINE,L1,-3400,2746,554,49034724,49040673 -3 - chr18 49116301 49116372 chr18,49115759,49116372,+,LTR87,LTR,ERVL?,1,624,0,49115759,49116372 +1 + chr18 49116372 49116484 chr18,49116372,49116518,+,X7C_LINE,LINE,CR1,63,223,-13,49116310,49116531 +4 + chr18 49205912 49205957 chr18,49205273,49205957,+,L3,LINE,CR1,3325,4063,-36,49201949,49205993 +1 + chr18 49447279 49447420 chr18,49447279,49447437,+,LTR9,LTR,ERV1,453,612,0,49446827,49447437 -1 + chr18 49484536 49484599 chr18,49484310,49484599,+,AluSg,SINE,Alu,1,292,-18,49484310,49484617 -5 + chr18 49484707 49484785 chr18,49484707,49484785,-,MIR,SINE,MIR,-45,217,138,49484662,49484922 +6 - chr18 49484801 49484822 chr18,49484801,49485089,+,AluSx,SINE,Alu,2,290,-22,49484800,49485111 -2 + chr18 49485954 49486101 chr18,49485927,49486101,+,AluJo,SINE,Alu,132,301,-11,49485796,49486112 -4 + chr18 49487711 49487817 chr18,49487711,49487953,+,L1M4,LINE,L1,5496,5769,-415,49482216,49488368 +4 + chr18 49499390 49499420 chr18,49499101,49499420,-,LTR16A,LTR,ERVL,-72,366,1,49499029,49499420 -1 - chr18 49499922 49499944 chr18,49499922,49499944,+,(AATT)n,Simple_repeat,Simple_repeat,1,22,0,49499922,49499944 +6 + chr18 49499944 49499998 chr18,49499944,49499998,-,Alu,SINE,Alu,-24,287,234,49499920,49500231 -6 - chr18 49500001 49500197 chr18,49500001,49500197,-,AluSx1,SINE,Alu,-81,231,32,49499920,49500228 -6 - chr18 49501034 49501346 chr18,49501034,49501346,-,AluSx4,SINE,Alu,0,310,2,49501034,49501347 -6 - chr18 49739823 49740041 chr18,49739639,49740041,-,L1MD,LINE,L1,-3143,3003,2581,49736496,49742621 +5 - chr18 49740068 49740124 chr18,49740068,49740174,+,AluJb,SINE,Alu,200,305,-7,49739869,49740181 -2 + chr18 49742026 49742063 chr18,49741767,49742068,+,AluSx,SINE,Alu,1,301,-11,49741767,49742079 -1 + chr18 50313201 50313327 chr18,50313025,50313327,-,AluJr,SINE,Alu,-24,288,1,50313001,50313327 -2 - chr18 50313327 50313595 chr18,50313327,50313636,+,LTR26E,LTR,ERV1,293,602,-20,50313035,50313656 +5 + chr18 51346249 51346344 chr18,51346156,51346344,-,LTR88c,LTR,Gypsy?,-476,386,198,51345680,51346541 -1 - chr18 51372738 51372804 chr18,51372732,51373518,-,L1PA7,LINE,L1,-49,6105,5320,51372683,51378837 -3 - chr18 51465581 51465745 chr18,51465581,51465745,+,MIR3,SINE,MIR,16,201,-7,51465566,51465752 +6 + chr18 51466046 51466156 chr18,51466046,51466156,-,L2c,LINE,L2,-9,3378,3254,51466037,51469409 -6 - chr18 51466409 51466498 chr18,51466409,51466498,-,MIRc,SINE,MIR,-124,144,52,51466285,51466549 -6 - chr18 51467313 51467338 chr18,51467313,51467338,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,51467313,51467338 +6 + chr18 51467409 51467706 chr18,51467409,51467706,-,AluSx,SINE,Alu,-15,297,1,51467394,51467706 -6 - chr18 51468026 51468124 chr18,51468026,51468124,-,L2c,LINE,L2,-11,3376,3291,51468015,51471414 -6 - chr18 51468324 51468378 chr18,51468324,51470188,-,L1M5,LINE,L1,-425,5739,3820,51467899,51474007 -5 - chr18 51524962 51525082 chr18,51524942,51525152,-,L2a,LINE,L2,-2,3424,3208,51524940,51528359 -3 - chr18 51532112 51532144 chr18,51531996,51532144,-,MIR,SINE,MIR,-3,259,90,51531993,51532233 -2 - chr18 51532144 51532277 chr18,51532144,51532399,+,AluJb,SINE,Alu,1,260,-52,51532144,51532451 +5 + chr18 51560613 51560823 chr18,51560613,51560823,-,LTR33,LTR,ERVL,-251,264,50,51560362,51560872 -5 - chr18 51561183 51561313 chr18,51561183,51561313,+,L2b,LINE,L2,3234,3358,-17,51557950,51561330 +6 + chr18 51562300 51562469 chr18,51562300,51562773,+,MLT1C,LTR,ERVL-MaLR,1,467,0,51562300,51562773 +5 + chr18 51562517 51562569 chr18,51562300,51562773,+,MLT1C,LTR,ERVL-MaLR,1,467,0,51562300,51562773 +5 + chr18 52338454 52338553 chr18,52338454,52338553,-,Charlie4z,DNA,hAT-Charlie,-42,125,34,52338412,52338586 +6 - chr18 53480835 53480966 chr18,53480791,53480966,-,MLT1F,LTR,ERVL-MaLR,-12,668,420,53480779,53481385 +5 - chr18 53480959 53481041 chr18,53480959,53481041,-,MLT1F,LTR,ERVL-MaLR,-268,280,199,53480691,53481239 +6 - chr18 53481032 53481073 chr18,53481032,53481278,-,MLT1F,LTR,ERVL-MaLR,-318,230,6,53480714,53481283 +2 - chr18 53577419 53577485 chr18,53577402,53577485,-,MIR,SINE,MIR,-114,148,66,53577288,53577550 -2 - chr18 53579623 53579673 chr18,53579620,53579673,+,ORSL,DNA,hAT-Tip100,181,235,-40,53579440,53579713 -5 + chr18 53584267 53584349 chr18,53584267,53584379,+,Charlie4z,DNA,hAT-Charlie,1,110,-57,53584267,53584436 +4 + chr18 53588548 53588751 chr18,53588528,53589526,+,L2a,LINE,L2,2338,3426,0,53586191,53589526 +5 + chr18 54268439 54268474 chr18,54268439,54268474,+,(ACATAC)n,Simple_repeat,Simple_repeat,1,35,0,54268439,54268474 -6 + chr18 54268501 54268720 chr18,54268501,54268720,-,MIR,SINE,MIR,-3,265,31,54268498,54268750 +6 - chr18 54269013 54269316 chr18,54269013,54269316,+,AluSq,SINE,Alu,1,297,-16,54269013,54269332 -6 + chr18 54269570 54269611 chr18,54269570,54269611,+,(GAC)n,Simple_repeat,Simple_repeat,1,41,0,54269570,54269611 -6 + chr18 54885866 54885892 chr18,54885704,54886111,-,MSTA,LTR,ERVL-MaLR,0,428,1,54885704,54886111 +5 - chr18 54897926 54898083 chr18,54897670,54898105,-,Tigger2a,DNA,TcMar-Tigger,-5,429,2,54897665,54898106 +1 - chr18 55106318 55106495 chr18,55106318,55106495,+,MIR,SINE,MIR,44,262,-6,55106275,55106501 -6 + chr18 55106602 55106751 chr18,55106602,55106751,-,MIRc,SINE,MIR,-99,169,17,55106503,55106767 +6 - chr18 55107037 55107233 chr18,55107037,55107233,+,MLT1M,LTR,ERVL-MaLR,31,227,-445,55107007,55107678 -6 + chr18 55107543 55107638 chr18,55107543,55107638,+,FLAM_C,SINE,Alu,44,137,-165,55107500,55107803 -6 + chr18 55108540 55108653 chr18,55108540,55109248,+,L2b,LINE,L2,2654,3375,0,55105887,55109248 -2 + chr18 55119496 55119598 chr18,55119430,55119710,+,L2,LINE,L2,2636,2916,-503,55116795,55120213 -1 + chr18 55482723 55482940 chr18,55482678,55483112,+,L2c,LINE,L2,2939,3366,-21,55479740,55483133 +5 + chr18 55721063 55721529 chr18,55715484,55721529,-,L1PA2,LINE,L1,0,6155,124,55715484,55721652 -1 - chr18 55759040 55759086 chr18,55759030,55759086,-,L2b,LINE,L2,-1,3374,3319,55759029,55762404 -2 - chr18 55772707 55772771 chr18,55772520,55772890,+,THE1C,LTR,ERVL-MaLR,1,375,0,55772520,55772890 +3 + chr18 55776727 55777325 chr18,55776522,55777325,+,L1ME4a,LINE,L1,5296,6124,0,55771227,55777325 -5 + chr18 55777952 55778189 chr18,55777952,55778189,-,MIRb,SINE,MIR,-9,259,19,55777943,55778207 +6 - chr18 55778626 55778789 chr18,55778626,55778789,+,MIRb,SINE,MIR,64,222,-46,55778563,55778835 -6 + chr18 55779066 55779097 chr18,55779066,55779097,+,(CTCCCC)n,Simple_repeat,Simple_repeat,1,31,0,55779066,55779097 -6 + chr18 55780955 55781025 chr18,55780949,55781025,+,MIR3,SINE,MIR,129,206,-2,55780821,55781027 -4 + chr18 55781155 55781278 chr18,55781155,55781278,+,Tigger19b,DNA,TcMar-Tigger,423,547,-3,55780733,55781281 -6 + chr18 55817167 55817710 chr18,55816717,55817710,+,MER57A-int,LTR,ERV1,3506,4488,-1699,55813212,55819409 +1 + chr18 55817764 55818001 chr18,55817764,55818001,+,MER57A-int,LTR,ERV1,4620,4849,-1338,55813145,55819339 +6 + chr18 55818446 55819429 chr18,55818446,55819429,+,MER57A-int,LTR,ERV1,4843,5802,-385,55813604,55819814 +6 + chr18 55819429 55819759 chr18,55819429,55819784,+,MER57C2,LTR,ERV1,42,434,0,55819388,55819784 +5 + chr18 55881688 55881702 chr18,55881141,55881702,+,L1ME3C,LINE,L1,5498,6094,-29,55875644,55881731 -5 + chr18 55882501 55882629 chr18,55882501,55882629,-,MIRc,SINE,MIR,-130,138,2,55882371,55882630 +6 - chr18 55882705 55882797 chr18,55882705,55882797,+,MIRc,SINE,MIR,2,96,-172,55882704,55882969 -6 + chr18 55882856 55883193 chr18,55882856,55883193,+,MLT1J2,LTR,ERVL-MaLR,71,445,-3,55882786,55883196 -6 + chr18 55883215 55883343 chr18,55883215,55883343,+,MIRc,SINE,MIR,98,239,-29,55883118,55883372 -6 + chr18 55883534 55883569 chr18,55883534,55883569,+,(TCAA)n,Simple_repeat,Simple_repeat,1,37,0,55883534,55883569 -6 + chr18 55893038 55893439 chr18,55887412,55893439,-,L1PA3,LINE,L1,0,6155,124,55887412,55893562 -1 - chr18 55998639 55998704 chr18,55998639,55998704,+,L2c,LINE,L2,3182,3246,-141,55995458,55998845 +6 + chr18 56023402 56023522 chr18,56022971,56024023,-,L1MB7,LINE,L1,-152,6032,4961,56022819,56028983 -5 - chr18 56027797 56028079 chr18,56027712,56028079,-,THE1B,LTR,ERVL-MaLR,0,364,1,56027712,56028079 +4 - chr18 56028430 56028469 chr18,56028430,56028469,+,(CAT)n,Simple_repeat,Simple_repeat,1,39,0,56028430,56028469 -6 + chr18 56028732 56028918 chr18,56028732,56028918,-,MIR3,SINE,MIR,-11,197,2,56028721,56028919 +6 - chr18 56040332 56040607 chr18,56040303,56040607,-,AluYc,SINE,Alu,0,299,1,56040303,56040607 +5 - chr18 56042135 56042344 chr18,56042028,56042419,+,MSTD,LTR,ERVL-MaLR,1,396,0,56042028,56042419 +1 + chr18 56055905 56056054 chr18,56055649,56056091,-,Tigger2a,DNA,TcMar-Tigger,-1,433,2,56055648,56056092 +3 - chr18 56056542 56056659 chr18,56056387,56056678,+,AluJb,SINE,Alu,5,294,-18,56056383,56056696 -3 + chr18 56061109 56061137 chr18,56060686,56061137,+,LOR1b,LTR,ERV1,1,456,-5,56060686,56061142 -5 + chr18 56061229 56061278 chr18,56061229,56061324,-,L2c,LINE,L2,-1,3386,3283,56061228,56064606 +2 - chr18 56062759 56062957 chr18,56062759,56062957,+,MIRb,SINE,MIR,1,228,-34,56062759,56062991 -6 + chr18 56063040 56063078 chr18,56063040,56063261,+,MIR1_Amn,SINE,MIR,2,268,0,56063039,56063261 -1 + chr18 56068242 56068370 chr18,56068242,56068545,+,LTR78B,LTR,ERV1,257,582,-714,56067986,56069259 -1 + chr18 56077522 56077728 chr18,56077233,56077879,-,Tigger17a,DNA,TcMar-Tigger,-1,653,1,56077232,56077879 -3 - chr18 56079581 56079595 chr18,56079398,56079595,-,U17,snRNA,snRNA,-5,202,1,56079393,56079595 -1 - chr18 56088410 56088476 chr18,56088304,56088476,+,LTR50,LTR,ERVL,1,201,-594,56088304,56089070 +1 + chr18 56090218 56090266 chr18,56090218,56090266,+,(TTTCTC)n,Simple_repeat,Simple_repeat,1,50,0,56090218,56090266 -6 + chr18 56090282 56090303 chr18,56090282,56090457,+,Tigger16a,DNA,TcMar-Tigger,477,652,-305,56089806,56090762 -2 + chr18 56096159 56096249 chr18,56096159,56096249,-,MER103C,DNA,hAT-Charlie,0,297,197,56096159,56096445 -6 - chr18 56105213 56105296 chr18,56105213,56105296,+,MIRc,SINE,MIR,18,114,-154,56105196,56105450 -6 + chr18 56105307 56105613 chr18,56105307,56105694,+,MSTD,LTR,ERVL-MaLR,1,394,-2,56105307,56105696 -2 + chr18 56121278 56121315 chr18,56121276,56121315,+,(CCTTTCT)n,Simple_repeat,Simple_repeat,1,41,0,56121276,56121315 -4 + chr18 56122518 56122529 chr18,56122518,56122897,+,L4_C_Mam,LINE,RTE-X,1503,1868,-3270,56121016,56126167 -2 + chr18 56138612 56138715 chr18,56138307,56139615,-,L2a,LINE,L2,0,3426,1980,56138307,56141594 -1 - chr18 56142872 56143136 chr18,56142077,56143136,-,Arthur1B,DNA,hAT-Tip100,0,1225,189,56142077,56143324 -2 - chr18 56181349 56181434 chr18,56181227,56181434,+,HAL1b,LINE,L1,21,228,-2193,56181207,56183627 -4 + chr18 57054559 57054893 chr18,57054178,57054893,-,L1MB2,LINE,L1,-177,5994,5291,57054001,57060183 +5 - chr18 57054900 57055006 chr18,57054900,57055006,-,L3,LINE,CR1,-900,3199,3108,57054000,57058113 +6 - chr18 57055241 57055452 chr18,57055241,57055452,+,MIR,SINE,MIR,51,261,-7,57055191,57055459 -6 + chr18 57055669 57055954 chr18,57055669,57055954,-,L3,LINE,CR1,-1992,2107,1810,57053677,57057763 +6 - chr18 57057513 57057614 chr18,57057513,57057614,-,MamGypLTR1c,LTR,Gypsy,0,803,697,57057513,57058310 +6 - chr18 57057622 57058000 chr18,57057622,57058050,-,MLT1J,LTR,ERVL-MaLR,-30,482,1,57057592,57058050 +2 - chr18 57069810 57070003 chr18,57068957,57072049,-,HERVH-int,LTR,ERV1,-4728,2985,1,57064229,57072049 +3 - chr18 57071904 57072049 chr18,57068957,57072049,-,HERVH-int,LTR,ERV1,-4728,2985,1,57064229,57072049 +4 - chr18 57072051 57072119 chr18,57072051,57072502,-,LTR7,LTR,ERV1,-2,448,1,57072049,57072502 +1 - chr18 57136322 57136610 chr18,57136271,57136811,-,MLT1F,LTR,ERVL-MaLR,0,548,1,57136271,57136811 +5 - chr18 57146876 57146998 chr18,57146544,57147035,+,L2c,LINE,L2,2342,2835,-584,57144203,57147619 -1 + chr18 57171133 57171194 chr18,57171096,57171304,+,MamTip2,DNA,hAT-Tip100,72,304,-1,57171025,57171305 -1 + chr18 57427738 57427781 chr18,57427738,57427781,+,(GCCTCG)n,Simple_repeat,Simple_repeat,1,48,0,57427738,57427781 +6 + chr18 57428136 57428165 chr18,57428136,57428165,+,(CCTCC)n,Simple_repeat,Simple_repeat,1,29,0,57428136,57428165 +6 + chr18 57430396 57430424 chr18,57430396,57430424,+,(GT)n,Simple_repeat,Simple_repeat,1,28,0,57430396,57430424 +6 + chr18 57431511 57431531 chr18,57431511,57431531,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,57431511,57431531 +6 + chr18 57588658 57588702 chr18,57588658,57588702,+,(TTTCATT)n,Simple_repeat,Simple_repeat,1,69,0,57588658,57588702 -6 + chr18 57588702 57588726 chr18,57588702,57588726,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,57588702,57588726 -6 + chr18 57588740 57588891 chr18,57588740,57588891,-,AluSx,SINE,Alu,-8,304,154,57588732,57589044 +6 - chr18 57639455 57639530 chr18,57639349,57639572,-,L1ME4b,LINE,L1,-549,343,115,57638800,57639686 -1 - chr18 57641559 57641824 chr18,57641542,57641824,-,AluSq,SINE,Alu,-17,296,11,57641525,57641834 -2 - chr18 57641824 57641859 chr18,57641824,57641859,-,L1M4,LINE,L1,-812,5366,5335,57641012,57647193 -6 - chr18 57641876 57641988 chr18,57641876,57641988,-,AluSx,SINE,Alu,0,312,206,57641876,57642193 -1 - chr18 57641988 57642052 chr18,57641988,57644178,-,LTR12C,LTR,ERV1,0,1579,3,57641988,57644180 -4 - chr18 57667242 57667441 chr18,57667207,57667441,-,AluJb,SINE,Alu,-3,309,87,57667204,57667527 -2 - chr18 57734026 57734096 chr18,57733912,57734134,+,L1ME4a,LINE,L1,5679,5925,-199,57728234,57734333 +3 + chr18 57735151 57735592 chr18,57734821,57735598,+,LTR17,LTR,ERV1,1,780,0,57734821,57735598 +1 + chr18 57737036 57737091 chr18,57737025,57737247,-,AluJb,SINE,Alu,-83,229,2,57736942,57737248 -3 - chr18 57961231 57961355 chr18,57961145,57961355,-,L2,LINE,L2,-1272,2147,1936,57959873,57963290 +5 - chr18 57961539 57961624 chr18,57961539,57962477,+,L1MEi,LINE,L1,439,1759,-453,57961101,57962930 -2 + chr18 57963450 57963519 chr18,57963417,57963726,+,HAL1,LINE,L1,921,1241,-1266,57962497,57964992 -1 + chr18 57964399 57964434 chr18,57964165,57964468,+,AluSz,SINE,Alu,2,311,-1,57964164,57964469 -1 + chr18 58189834 58189959 chr18,58189787,58189998,+,Charlie30a,DNA,hAT-Charlie,492,707,-84,58189296,58190082 -5 + chr18 58372110 58372418 chr18,58372110,58372418,-,AluJr,SINE,Alu,-9,303,1,58372101,58372418 -6 - chr18 58372480 58372585 chr18,58372480,58372585,-,AluJo,SINE,Alu,-185,127,23,58372295,58372607 -6 - chr18 58372623 58372666 chr18,58372623,58372847,+,AluSq2,SINE,Alu,83,306,-7,58372541,58372854 +5 + chr18 58416765 58416883 chr18,58416713,58416883,-,LTR78B,LTR,ERV1,-75,1221,1031,58416638,58417913 -1 - chr18 58450408 58450450 chr18,58450408,58450450,+,(CT)n,Simple_repeat,Simple_repeat,1,44,0,58450408,58450450 +6 + chr18 58451376 58451676 chr18,58451376,58451676,+,AluJb,SINE,Alu,1,300,-12,58451376,58451688 +6 + chr18 58452288 58452357 chr18,58452288,58452357,-,L2c,LINE,L2,0,3426,3356,58452288,58455712 -6 - chr18 58452629 58452695 chr18,58452629,58452695,-,OldhAT1,DNA,hAT-Ac,-2622,226,163,58450007,58452857 -6 - chr18 58452739 58452785 chr18,58452739,58452785,-,MIRc,SINE,MIR,-18,250,210,58452721,58452994 -6 - chr18 58452785 58453141 chr18,58452785,58453141,-,THE1A,LTR,ERVL-MaLR,0,355,1,58452785,58453141 -6 - chr18 58453141 58453169 chr18,58453141,58453169,-,MIRc,SINE,MIR,-59,209,184,58453082,58453352 -6 - chr18 58511602 58511809 chr18,58511602,58511809,+,Charlie16a,DNA,hAT-Charlie,126,336,-6,58511477,58511815 -6 + chr18 58538463 58538552 chr18,58538463,58538587,+,LTR84b,LTR,ERVL,46,169,-592,58538418,58539179 +5 + chr18 58659858 58659918 chr18,58659791,58659918,-,L3,LINE,CR1,-11,4088,3956,58659780,58663873 -1 - chr18 58670181 58670408 chr18,58670181,58670408,-,MIR,SINE,MIR,-10,252,7,58670171,58670414 +6 - chr18 58671866 58671877 chr18,58671866,58671949,+,(GCGG)n,Simple_repeat,Simple_repeat,1,83,0,58671866,58671949 -1 + chr18 58672613 58672859 chr18,58672474,58672988,-,Charlie1b,DNA,hAT-Charlie,-4,519,2,58672470,58672989 +5 - chr18 58675416 58675447 chr18,58675416,58675559,+,AluJr,SINE,Alu,85,230,-82,58675332,58675641 -2 + chr18 58752179 58752253 chr18,58752167,58752253,-,AluJr,SINE,Alu,-179,133,46,58751988,58752298 +5 - chr18 58752167 58752253 chr18,58752167,58752253,-,AluJr,SINE,Alu,-179,133,46,58751988,58752298 -5 - chr18 58752675 58752730 chr18,58752498,58752809,+,AluJb,SINE,Alu,3,292,-20,58752496,58752829 -1 + chr18 58752498 58752809 chr18,58752498,58752809,+,AluJb,SINE,Alu,3,292,-20,58752496,58752829 +1 + chr18 58752981 58753028 chr18,58752981,58753028,+,MIR,SINE,MIR,104,150,-112,58752878,58753140 +6 + chr18 58753496 58753506 chr18,58753188,58753506,-,AluSz,SINE,Alu,0,312,1,58753188,58753506 +4 - chr18 58753188 58753506 chr18,58753188,58753506,-,AluSz,SINE,Alu,0,312,1,58753188,58753506 -6 - chr18 58753623 58753745 chr18,58753623,58753745,+,L1ME4a,LINE,L1,5980,6116,-8,58747644,58753753 -6 + chr18 58753623 58753745 chr18,58753623,58753745,+,L1ME4a,LINE,L1,5980,6116,-8,58747644,58753753 +6 + chr18 58754031 58754226 chr18,58754031,58754226,-,MIRb,SINE,MIR,-27,241,8,58754004,58754233 -6 - chr18 58757473 58757764 chr18,58757226,58757764,-,MER77,LTR,ERVL,-26,578,2,58757200,58757765 +4 - chr18 58757803 58757838 chr18,58757803,58757838,+,L2b,LINE,L2,3045,3082,-293,58754759,58758131 -6 + chr18 58831686 58831788 chr18,58831667,58831789,-,FLAM_A,SINE,Alu,-10,132,2,58831657,58831790 -3 - chr18 59360700 59360828 chr18,59360643,59360875,-,MIR,SINE,MIR,0,262,18,59360643,59360892 -1 - chr18 59459072 59459089 chr18,59458903,59459132,+,MIRb,SINE,MIR,9,249,-19,59458895,59459151 +1 + chr18 59462431 59462528 chr18,59462404,59462683,-,AluJr,SINE,Alu,-11,301,1,59462393,59462683 -3 - chr18 59464030 59464067 chr18,59463919,59464072,+,Charlie26a,DNA,hAT-Charlie,49,199,-126,59463871,59464198 +3 + chr18 59465499 59465682 chr18,59465499,59465740,-,MER5C1,DNA,hAT-Charlie,-4,259,4,59465495,59465743 -5 - chr18 59568257 59568338 chr18,59568257,59569182,+,L4_B_Mam,LINE,RTE-X,230,1252,-3689,59568028,59572871 +5 + chr18 59568574 59568615 chr18,59568257,59569182,+,L4_B_Mam,LINE,RTE-X,230,1252,-3689,59568028,59572871 +5 + chr18 59685825 59685933 chr18,59685825,59685933,-,MER5A1,DNA,hAT-Charlie,-2,164,57,59685823,59685989 -6 - chr18 59686132 59686156 chr18,59686132,59686374,-,Tigger15a,DNA,TcMar-Tigger,-252,463,210,59685880,59686583 -4 - chr18 59688196 59688400 chr18,59688189,59688468,+,AluJo,SINE,Alu,1,305,-7,59688189,59688475 +5 + chr18 60013236 60013284 chr18,60013224,60013284,+,L1M2,LINE,L1,3277,3336,-2807,60009948,60016091 +2 + chr18 60013284 60013567 chr18,60013284,60013567,+,AluSx1,SINE,Alu,37,312,0,60013248,60013567 +6 + chr18 60013567 60013748 chr18,60013567,60013748,+,L1M2,LINE,L1,3337,3505,-2638,60010231,60016386 +6 + chr18 60013749 60013879 chr18,60013749,60013879,+,AluYc,SINE,Alu,166,295,-4,60013584,60013883 +6 + chr18 60013879 60014240 chr18,60013879,60014240,+,L1M2,LINE,L1,3497,3856,-2287,60010383,60016527 +6 + chr18 60294151 60294311 chr18,60294030,60294330,-,AluY,SINE,Alu,-6,305,4,60294024,60294333 -1 - chr18 60300987 60301118 chr18,60300987,60301303,+,L1PA10,LINE,L1,5845,6166,-2,60295143,60301305 +5 + chr18 60730886 60730938 chr18,60730842,60731118,+,MLT1D,LTR,ERVL-MaLR,231,501,-4,60730612,60731122 -3 + chr18 60771936 60771982 chr18,60771929,60773469,-,Tigger1,DNA,TcMar-Tigger,-3,2415,850,60771926,60774318 +3 - chr18 60804344 60804380 chr18,60802576,60804404,+,L1PA8,LINE,L1,4325,6170,-2,60798252,60804406 -3 + chr18 60827742 60827794 chr18,60827312,60828244,+,L1ME2,LINE,L1,5150,6137,-36,60822163,60828280 -3 + chr18 60902711 60902726 chr18,60902711,60902863,-,MIR3,SINE,MIR,-58,150,8,60902653,60902870 +1 - chr18 61573222 61573337 chr18,61573043,61573411,+,MLT1A,LTR,ERVL-MaLR,1,374,0,61573043,61573411 -3 + chr18 61573894 61573950 chr18,61573775,61574151,-,THE1C,LTR,ERVL-MaLR,-1,374,1,61573774,61574151 +3 - chr18 61585746 61585850 chr18,61585666,61586055,-,MSTD,LTR,ERVL-MaLR,-2,394,1,61585664,61586055 +5 - chr18 61592375 61592436 chr18,61592308,61592436,-,MLT1E2,LTR,ERVL-MaLR,-395,110,2,61591913,61592437 +5 - chr18 61592443 61592623 chr18,61592443,61592726,-,MLT1J2,LTR,ERVL-MaLR,-37,411,118,61592406,61592843 +2 - chr18 61599147 61599208 chr18,61598822,61599208,+,LTR48B,LTR,ERV1,205,640,-4,61598618,61599212 -4 + chr18 61604936 61605034 chr18,61604899,61605034,-,MIRb,SINE,MIR,-129,139,7,61604770,61605040 +4 - chr18 61611751 61612154 chr18,61611751,61612463,-,LTR8,LTR,ERV1,-1,690,1,61611750,61612463 +2 - chr18 61693217 61693273 chr18,61693217,61693453,+,MLT1J,LTR,ERVL-MaLR,269,511,-1,61692949,61693454 -2 + chr18 61752378 61752459 chr18,61752378,61752459,+,MER5A,DNA,hAT-Charlie,63,143,-46,61752316,61752505 +6 + chr18 61753308 61753699 chr18,61753308,61753699,+,MSTA,LTR,ERVL-MaLR,1,388,-40,61753308,61753739 +6 + chr18 61753699 61753974 chr18,61753699,61753974,-,AluJb,SINE,Alu,-13,299,5,61753686,61753978 -6 - chr18 61753974 61754016 chr18,61753974,61754016,+,MSTA,LTR,ERVL-MaLR,389,427,-1,61753586,61754017 +6 + chr18 61754136 61754576 chr18,61754136,61754576,-,MLT1C,LTR,ERVL-MaLR,-2,465,16,61754134,61754591 -6 - chr18 61754605 61754697 chr18,61754605,61754697,+,MIR3,SINE,MIR,86,175,-33,61754520,61754730 +6 + chr18 62246724 62246943 chr18,62246724,62246943,+,L1M6,LINE,L1,377,604,-5892,62246348,62252835 +6 + chr18 62247150 62247375 chr18,62247150,62247375,+,L1M6,LINE,L1,835,1064,-5432,62246316,62252807 +6 + chr18 62300036 62300267 chr18,62299836,62300267,-,L1MC5,LINE,L1,-212,9092,8677,62299624,62308943 +5 - chr18 62300268 62300408 chr18,62300268,62300408,+,L2c,LINE,L2,3020,3163,-224,62297249,62300632 -6 + chr18 62300934 62300998 chr18,62300897,62301024,-,L2c,LINE,L2,-4,3383,3260,62300893,62304283 +1 - chr18 62526069 62526097 chr18,62526069,62526097,+,(TCTT)n,Simple_repeat,Simple_repeat,1,29,0,62526069,62526097 -6 + chr18 62551203 62551470 chr18,62551068,62551470,-,L2,LINE,L2,-1832,1587,1168,62549236,62552637 -1 - chr18 62552317 62552455 chr18,62552317,62552455,+,L1MC4,LINE,L1,7684,7845,-197,62544634,62552652 +6 + chr18 63367330 63367356 chr18,63367330,63367356,+,(CCGCCA)n,Simple_repeat,Simple_repeat,1,26,0,63367330,63367356 +6 + chr18 63381377 63381629 chr18,63381356,63381659,+,MLT1G1,LTR,ERVL-MaLR,185,567,-12,63381172,63381671 +5 + chr18 63486000 63486018 chr18,63486000,63486027,+,A-rich,Low_complexity,Low_complexity,1,27,0,63486000,63486027 +5 + chr18 64080035 64080092 chr18,64080035,64080092,+,L1M5,LINE,L1,4451,4510,-1636,64075585,64081728 -6 + chr18 64080138 64080268 chr18,64080138,64080268,+,L2a,LINE,L2,2825,2952,-467,64077314,64080735 -6 + chr18 64080317 64080370 chr18,64080317,64080370,+,L2a,LINE,L2,3073,3125,-301,64077245,64080671 -6 + chr18 64080372 64080402 chr18,64080372,64080451,-,LTR8A,LTR,ERV1,0,727,653,64080372,64081103 +2 - chr18 64127385 64127439 chr18,64127277,64127510,-,MIRb,SINE,MIR,-21,247,22,64127256,64127531 -3 - chr18 64213185 64213577 chr18,64213185,64213577,+,L1M5,LINE,L1,5355,5789,-335,64207831,64213912 -6 + chr18 64214978 64215046 chr18,64214978,64215069,-,L2b,LINE,L2,-1,3374,3288,64214977,64218356 +2 - chr18 64249301 64249393 chr18,64249282,64249407,-,FLAM_A,SINE,Alu,-10,132,8,64249272,64249414 -3 - chr18 64258396 64258508 chr18,64258396,64258508,+,MER81,DNA,hAT-Blackjack,1,114,0,64258396,64258508 -6 + chr18 64287795 64287871 chr18,64287703,64287871,-,MIR,SINE,MIR,-34,228,56,64287669,64287926 -2 - chr18 64415932 64416106 chr18,64415621,64416106,-,L1MB2,LINE,L1,-2,6169,5682,64415619,64421787 -2 - chr18 64422730 64422769 chr18,64422568,64422769,-,L1PA13,LINE,L1,-14,6149,5948,64422554,64428716 -2 - chr18 65125600 65125710 chr18,65125547,65126015,-,ERV3-16A3_I-int,LTR,ERVL,-161,5065,4674,65125386,65130688 +1 - chr18 65424013 65424071 chr18,65423814,65424190,+,THE1C,LTR,ERVL-MaLR,1,375,0,65423814,65424190 +1 + chr18 65441694 65441794 chr18,65441694,65441794,+,LTR105_Mam,LTR,ERVL,1,102,-498,65441694,65442292 +6 + chr18 65447147 65447497 chr18,65446927,65447497,+,MLT1F2,LTR,ERVL-MaLR,1,569,0,65446927,65447497 +2 + chr18 65606090 65606482 chr18,65605071,65606518,+,LTR12C,LTR,ERV1,3,1579,0,65605069,65606518 +1 + chr18 65606638 65606767 chr18,65606638,65607008,+,MSTA,LTR,ERVL-MaLR,1,428,0,65606638,65607008 +4 + chr18 65642720 65642769 chr18,65642720,65642895,+,MLT1J,LTR,ERVL-MaLR,323,502,-10,65642398,65642905 +4 + chr18 65651885 65652053 chr18,65651858,65652216,+,MLT2B1,LTR,ERVL,161,553,-48,65651698,65652264 +5 + chr18 67481791 67482602 chr18,67481741,67482602,+,Charlie10,DNA,hAT-Charlie,1919,2822,0,67479823,67482602 -5 + chr18 67482732 67482941 chr18,67482732,67482941,+,CR1-L3A_Croc,LINE,CR1,3278,3483,-805,67479455,67483746 -6 + chr18 67483574 67483592 chr18,67483574,67483592,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,56,0,67483574,67483592 -6 + chr18 67483592 67483628 chr18,67483592,67483628,+,(TTTCCCT)n,Simple_repeat,Simple_repeat,1,39,0,67483592,67483628 -6 + chr18 67483916 67483981 chr18,67483916,67483981,+,MIRc,SINE,MIR,96,158,-110,67483821,67484091 -6 + chr18 67484052 67484375 chr18,67484052,67484375,-,LTR104_Mam,LTR,Gypsy,-132,1377,1033,67483920,67485407 +6 - chr18 67672320 67672364 chr18,67672320,67673438,+,Charlie2b,DNA,hAT-Charlie,3,1266,-1516,67672318,67674954 -2 + chr18 67672526 67672612 chr18,67672320,67673438,+,Charlie2b,DNA,hAT-Charlie,3,1266,-1516,67672318,67674954 -3 + chr18 67808505 67809576 chr18,67808450,67809751,-,HSMAR1,DNA,TcMar-Mariner,-3,1284,1,67808447,67809751 +5 - chr18 67814623 67814822 chr18,67814623,67814910,+,AluY,SINE,Alu,1,293,-18,67814623,67814928 -1 + chr18 67834435 67834490 chr18,67834435,67835124,+,L2,LINE,L2,33,749,-2670,67834403,67837794 +4 + chr18 67836154 67836258 chr18,67835646,67838042,-,L1MA2,LINE,L1,-34,6270,3851,67835612,67841892 -3 - chr18 67874087 67874193 chr18,67873933,67874193,-,MLT1I,LTR,ERVL-MaLR,0,411,138,67873933,67874330 -2 - chr18 67897180 67897579 chr18,67897174,67897579,+,L1MA9,LINE,L1,189,584,-5658,67896986,67903237 +2 + chr18 67897612 67897906 chr18,67897612,67897906,+,L1MA9,LINE,L1,2476,2772,-3374,67895137,67901280 +6 + chr18 67897931 67899085 chr18,67897931,67899085,+,L1MA9,LINE,L1,2956,4276,-1870,67894976,67900955 +6 + chr18 67899212 67899487 chr18,67899212,67899487,+,L2a,LINE,L2,3132,3401,-25,67896081,67899512 +6 + chr18 67899567 67899593 chr18,67899567,67899593,+,(TGAAT)n,Simple_repeat,Simple_repeat,1,27,0,67899567,67899593 +6 + chr18 68114291 68114377 chr18,68114288,68114551,-,AluSz6,SINE,Alu,-37,275,1,68114251,68114551 -5 - chr18 68258339 68258554 chr18,68258062,68258554,-,MLT1H,LTR,ERVL-MaLR,-31,518,18,68258031,68258571 +5 - chr18 68263499 68263603 chr18,68263479,68263870,+,L2,LINE,L2,426,851,-2568,68263054,68266438 -3 + chr18 68427034 68427326 chr18,68427034,68427345,+,LTR40b,LTR,ERVL,1,351,-111,68427034,68427456 +4 + chr18 68436411 68436456 chr18,68436313,68436456,-,MER5A1,DNA,hAT-Charlie,-5,161,1,68436308,68436456 -2 - chr18 68436673 68436713 chr18,68436673,68436713,+,(AACAGGA)n,Simple_repeat,Simple_repeat,1,40,0,68436673,68436713 +6 + chr18 68721191 68721529 chr18,68721191,68721529,-,L1ME3A,LINE,L1,-14,6159,5848,68721177,68727376 -6 - chr18 68754500 68754583 chr18,68754480,68754650,+,AluJr,SINE,Alu,137,303,-9,68754344,68754659 -1 + chr18 68908048 68908288 chr18,68906092,68908288,-,L1MB5,LINE,L1,-283,6492,4245,68905809,68912532 -1 - chr18 68908294 68908497 chr18,68908294,68908497,-,L1MB5,LINE,L1,-6391,216,10,68901903,68908506 -6 - chr18 69212669 69212808 chr18,69212669,69212808,+,MIRb,SINE,MIR,112,262,-6,69212558,69212814 +6 + chr18 69213091 69213177 chr18,69213091,69213177,+,L1PA16,LINE,L1,6085,6166,0,69207007,69213177 +6 + chr18 69213193 69213562 chr18,69213193,69213562,-,THE1D,LTR,ERVL-MaLR,0,381,1,69213193,69213562 -6 - chr18 69213724 69213760 chr18,69213724,69213760,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,69213724,69213760 +6 + chr18 69398726 69398837 chr18,69398711,69398837,+,L1MC5a,LINE,L1,2191,2326,-451,69396521,69399288 -5 + chr18 69399150 69399249 chr18,69399150,69399266,+,MIRb,SINE,MIR,90,217,-51,69399061,69399317 -1 + chr18 69483633 69483678 chr18,69483633,69483678,-,X6A_LINE,LINE,CR1,-63,1017,972,69483570,69484649 +6 - chr18 69532737 69532858 chr18,69532581,69532873,+,AluJr,SINE,Alu,4,294,-18,69532578,69532891 -3 + chr18 69618544 69618694 chr18,69618459,69618827,-,THE1B,LTR,ERVL-MaLR,0,364,1,69618459,69618827 +1 - chr18 69659837 69659982 chr18,69659822,69659982,+,(TA)n,Simple_repeat,Simple_repeat,1,170,0,69659822,69659982 +1 + chr18 69660670 69660968 chr18,69660670,69660968,-,AluSg7,SINE,Alu,-11,298,1,69660659,69660968 -6 - chr18 69661077 69661445 chr18,69661077,69661445,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,69661077,69661445 -6 - chr18 69662042 69662279 chr18,69662042,69662279,-,AluSx1,SINE,Alu,-75,237,1,69661967,69662279 -6 - chr18 69662299 69662340 chr18,69662299,69662340,+,(GTCTTCT)n,Simple_repeat,Simple_repeat,1,41,0,69662299,69662340 +6 + chr18 69663288 69663413 chr18,69663288,69663435,+,L1PA13,LINE,L1,5988,6163,0,69657301,69663435 +5 + chr18 69704978 69705196 chr18,69704778,69705196,-,MLT1J-int,LTR,ERVL-MaLR,-163,1224,815,69704615,69706010 +5 - chr18 70335439 70335506 chr18,70335381,70335678,-,Charlie24,DNA,hAT-Charlie,-1968,482,178,70333413,70335855 -1 - chr18 70335929 70335942 chr18,70335871,70335942,+,MIRc,SINE,MIR,129,199,-69,70335743,70336011 -5 + chr18 70339800 70339881 chr18,70339797,70340361,-,MLT1E2,LTR,ERVL-MaLR,-6,648,1,70339791,70340361 -3 - chr18 70348972 70349081 chr18,70342941,70349081,-,L1PA5,LINE,L1,0,6154,13,70342941,70349093 -2 - chr18 70351979 70352158 chr18,70351869,70352158,+,MLT1B,LTR,ERVL-MaLR,181,451,-16,70351689,70352174 +5 + chr18 70352434 70352459 chr18,70352434,70352597,-,L2c,LINE,L2,-8,3418,3243,70352426,70355839 -5 - chr18 70380140 70380207 chr18,70379994,70380207,-,L1MD,LINE,L1,-3651,2495,2267,70376343,70382473 +5 - chr18 70380366 70380712 chr18,70380366,70380712,-,MLT1A0,LTR,ERVL-MaLR,-2,363,4,70380364,70380715 +6 - chr18 70381256 70381564 chr18,70381256,70381564,+,AluSp,SINE,Alu,1,310,-3,70381256,70381567 -6 + chr18 70381654 70381915 chr18,70381654,70381915,+,L2c,LINE,L2,3076,3343,-44,70378579,70381959 -6 + chr18 70382027 70382372 chr18,70382027,70382372,+,L2b,LINE,L2,2995,3363,-12,70379033,70382384 -6 + chr18 70383253 70383342 chr18,70383253,70383359,+,MIRc,SINE,MIR,51,152,-116,70383203,70383475 -2 + chr18 70384471 70384591 chr18,70384448,70385140,-,LTR8,LTR,ERV1,0,691,1,70384448,70385140 +1 - chr18 70630534 70630544 chr18,70630343,70630544,+,MIRc,SINE,MIR,66,268,0,70630278,70630544 -5 + chr18 70650610 70650744 chr18,70650380,70650842,+,LTR16D,LTR,ERVL,168,651,0,70650213,70650842 -1 + chr18 71000477 71000624 chr18,71000429,71000632,-,MLT1B,LTR,ERVL-MaLR,0,390,187,71000429,71000818 +5 - chr18 71011440 71011490 chr18,71011394,71011774,-,MER57E1,LTR,ERV1,0,372,1,71011394,71011774 +1 - chr18 71223057 71223157 chr18,71222898,71223374,+,L2,LINE,L2,2526,3034,-385,71220373,71223759 -3 + chr18 71237026 71237102 chr18,71237026,71237386,+,THE1C,LTR,ERVL-MaLR,1,373,-2,71237026,71237388 -1 + chr18 71519962 71520073 chr18,71519817,71520073,+,L1M5,LINE,L1,3094,3380,-2766,71516724,71522839 -5 + chr18 71521989 71522322 chr18,71521830,71522322,+,MLT1D,LTR,ERVL-MaLR,1,504,-1,71521830,71522323 -4 + chr18 71522665 71523155 chr18,71522665,71523155,+,MLT2A2,LTR,ERVL,1,453,0,71522665,71523155 -6 + chr18 71527777 71527967 chr18,71527577,71528444,-,L1MC3,LINE,L1,-36,7749,6868,71527541,71535311 +3 - chr18 71548599 71548696 chr18,71548401,71548773,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,71548401,71548773 -3 + chr18 71578807 71578956 chr18,71578735,71579218,-,LTR66,LTR,ERVL,-154,456,1,71578581,71579218 +1 - chr18 71736423 71736483 chr18,71736401,71736483,-,L2c,LINE,L2,-14,3373,3282,71736387,71739764 +4 - chr18 71782191 71782271 chr18,71782191,71782271,-,LTR33B,LTR,ERVL,-369,134,55,71781822,71782325 +1 - chr18 71786981 71787075 chr18,71786684,71787313,+,ERVL-E-int,LTR,ERVL,1016,1656,-4101,71785669,71791414 -3 + chr18 71788112 71788128 chr18,71787298,71788226,+,ERVL-E-int,LTR,ERVL,3276,4234,-1433,71784023,71789659 -1 + chr18 71870443 71870471 chr18,71870443,71870471,+,(GAA)n,Simple_repeat,Simple_repeat,1,30,0,71870443,71870471 +6 + chr18 72880087 72880234 chr18,72879940,72880315,+,THE1D,LTR,ERVL-MaLR,1,381,0,72879940,72880315 +3 + chr18 73151241 73151252 chr18,73150889,73151252,+,MER47A,DNA,TcMar-Tigger,1,366,0,73150889,73151252 -5 + chr18 73154181 73154383 chr18,73154181,73154383,+,MER58A,DNA,hAT-Charlie,5,224,0,73154177,73154383 -6 + chr18 73155360 73155671 chr18,73155360,73155671,-,AluY,SINE,Alu,0,311,1,73155360,73155671 +6 - chr18 73159520 73160093 chr18,73159520,73160093,+,L1MB7,LINE,L1,4546,5114,-1032,73154975,73161125 -6 + chr18 73160153 73160713 chr18,73160153,73160713,+,L1MB7,LINE,L1,5586,6171,-13,73154568,73160726 -6 + chr18 73161185 73161537 chr18,73161185,73161537,-,THE1D,LTR,ERVL-MaLR,0,381,1,73161185,73161537 +6 - chr18 73169847 73170028 chr18,73169820,73170028,-,MIR,SINE,MIR,-4,258,36,73169816,73170063 +4 - chr18 73172838 73172962 chr18,73172623,73173669,-,L2a,LINE,L2,-4,3422,2361,73172619,73176029 +3 - chr18 73250297 73250533 chr18,73250297,73250533,+,L1MCa,LINE,L1,823,1058,-5575,73249475,73256108 -6 + chr18 73250534 73250695 chr18,73250534,73251396,+,L1MCa,LINE,L1,1615,2604,-4014,73248920,73255410 -2 + chr18 73255598 73255724 chr18,73254976,73255724,+,L1MCa,LINE,L1,4723,5494,-1043,73250254,73256767 -5 + chr18 73255734 73255918 chr18,73255734,73256099,-,MSTD,LTR,ERVL-MaLR,-5,391,1,73255729,73256099 +2 - chr18 73264307 73264480 chr18,73264307,73264608,+,AluY,SINE,Alu,2,304,-7,73264306,73264615 -1 + chr18 73324941 73325047 chr18,73324614,73325047,+,LTR7Y,LTR,ERV1,1,472,0,73324614,73325047 +1 + chr18 73325047 73325193 chr18,73325047,73328058,+,HERVH-int,LTR,ERV1,1,2995,-4718,73325047,73332776 +1 + chr18 73326741 73327188 chr18,73325047,73328058,+,HERVH-int,LTR,ERV1,1,2995,-4718,73325047,73332776 +1 + chr18 73332272 73332334 chr18,73331749,73332334,+,L1M5,LINE,L1,4559,5171,-975,73327191,73333309 +1 + chr18 73333404 73333478 chr18,73333404,73333478,-,7SLRNA,srpRNA,srpRNA,-244,76,1,73333160,73333478 -6 - chr18 73349412 73349525 chr18,73349412,73349525,-,L2,LINE,L2,-575,2844,2720,73348837,73352244 -6 - chr18 73922492 73922550 chr18,73922492,73922550,+,L2c,LINE,L2,3198,3247,-140,73919295,73922690 -6 + chr18 74034041 74034161 chr18,74033800,74034245,+,MLT1H2,LTR,ERVL-MaLR,1,484,-5,74033800,74034250 -1 + chr18 74212051 74212356 chr18,74212051,74212356,+,AluSq2,SINE,Alu,1,306,-7,74212051,74212363 -6 + chr18 74240272 74240407 chr18,74239990,74240407,+,L2a,LINE,L2,2974,3422,-4,74237017,74240411 -4 + chr18 74409415 74409523 chr18,74409364,74409523,-,AluYh3,SINE,Alu,-15,296,138,74409349,74409660 -1 - chr18 74409523 74409624 chr18,74409523,74409624,+,Tigger4a,DNA,TcMar-Tigger,136,236,0,74409388,74409624 +6 + chr18 74409624 74409819 chr18,74409624,74409819,-,L1MEd,LINE,L1,-5656,1838,1627,74403968,74411445 -6 - chr18 74409819 74410124 chr18,74409819,74410124,+,AluSx1,SINE,Alu,1,302,-10,74409819,74410134 +6 + chr18 74411590 74411740 chr18,74411526,74411740,-,L1MB3,LINE,L1,-9,6174,5941,74411517,74417680 -2 - chr18 74411741 74411908 chr18,74411741,74411908,-,MIRb,SINE,MIR,-99,169,2,74411642,74411909 -6 - chr18 74561381 74561433 chr18,74561132,74561433,+,AluSx1,SINE,Alu,1,301,-11,74561132,74561444 -5 + chr18 74592150 74592692 chr18,74592150,74592692,+,MLT1L,LTR,ERVL-MaLR,11,600,-10,74592140,74592702 -6 + chr18 74592802 74592892 chr18,74592802,74592892,-,MIR,SINE,MIR,-68,200,99,74592734,74592990 +6 - chr18 74592959 74593325 chr18,74592959,74593325,+,MLT1I,LTR,ERVL-MaLR,7,408,-3,74592953,74593328 -5 + chr18 74593470 74593839 chr18,74593470,74593849,-,L1PB2,LINE,L1,-5,6146,5746,74593465,74599594 +5 - chr18 74596432 74596708 chr18,74596432,74596708,-,AluSz,SINE,Alu,-23,289,1,74596409,74596708 +6 - chr18 75073619 75073764 chr18,75073619,75073764,-,MIRb,SINE,MIR,-37,231,70,75073582,75073833 -6 - chr18 75073833 75073865 chr18,75073833,75073865,-,MIR,SINE,MIR,-33,229,202,75073800,75074066 -6 - chr18 75073865 75074205 chr18,75073865,75074246,+,THE1D,LTR,ERVL-MaLR,1,381,0,75073865,75074246 +5 + chr18 75104015 75104377 chr18,75104015,75104377,-,THE1B,LTR,ERVL-MaLR,0,364,1,75104015,75104377 +6 - chr18 75104576 75104750 chr18,75104576,75104750,+,MIRc,SINE,MIR,2,176,-92,75104575,75104842 -6 + chr18 75105653 75105693 chr18,75105653,75105693,+,G-rich,Low_complexity,Low_complexity,1,40,0,75105653,75105693 -6 + chr18 75387422 75387475 chr18,75387422,75387475,+,L2a,LINE,L2,3365,3425,-1,75384058,75387476 +6 + chr18 75418816 75418852 chr18,75418556,75418852,-,Plat_L3,LINE,CR1,-1173,2413,2133,75417383,75420984 -2 - chr18 75436898 75436957 chr18,75436898,75437006,-,L2a,LINE,L2,-54,3372,3258,75436844,75440263 +1 - chr18 75696079 75696261 chr18,75696021,75696261,-,MIR,SINE,MIR,0,262,15,75696021,75696275 +5 - chr18 75844925 75844985 chr18,75844874,75844985,+,MLT1K,LTR,ERVL-MaLR,5,128,-467,75844870,75845452 -5 + chr18 76122998 76123022 chr18,76122565,76123022,-,MLT1C,LTR,ERVL-MaLR,0,467,4,76122565,76123025 -1 - chr18 76123048 76123077 chr18,76123048,76123077,+,(AG)n,Simple_repeat,Simple_repeat,1,29,0,76123048,76123077 +6 + chr18 76125711 76125823 chr18,76125530,76125823,-,AluJb,SINE,Alu,-16,296,2,76125514,76125824 -2 - chr18 76126326 76126755 chr18,76126326,76126755,+,MamGypLTR3a,LTR,Gypsy,386,963,-18,76125941,76126773 +6 + chr18 76132934 76133074 chr18,76132798,76133126,-,L2,LINE,L2,-411,3008,2650,76132387,76135775 -3 - chr18 76144494 76144581 chr18,76144415,76144644,-,MIRb,SINE,MIR,-9,259,2,76144406,76144645 -3 - chr18 76177599 76177738 chr18,76177549,76179720,-,MER101-int,LTR,ERV1,-1237,5094,2782,76176312,76182501 +1 - chr18 76215626 76215702 chr18,76215626,76216628,-,L1MD3,LINE,L1,-1879,6116,5127,76213747,76221754 -5 - chr18 76228903 76228981 chr18,76228856,76228981,+,MER3,DNA,hAT-Charlie,1,126,-83,76228856,76229064 -4 + chr18 76228986 76229003 chr18,76228986,76229059,+,L1MB4,LINE,L1,6108,6180,0,76222879,76229059 -2 + chr18 76247740 76247844 chr18,76247740,76247943,+,MER3,DNA,hAT-Charlie,2,203,-6,76247739,76247949 +4 + chr18 76251170 76251317 chr18,76251170,76251317,-,MIR3,SINE,MIR,-28,180,40,76251142,76251356 -6 - chr18 76255129 76255201 chr18,76255129,76255201,+,L1PB,LINE,L1,5212,5283,-863,76249918,76256064 -6 + chr18 76258003 76258024 chr18,76258003,76258024,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,76258003,76258024 +6 + chr18 76372866 76372911 chr18,76372866,76373179,+,AluJb,SINE,Alu,1,312,0,76372866,76373179 +4 + chr18 76386436 76386469 chr18,76386436,76386469,+,GA-rich,Low_complexity,Low_complexity,1,35,0,76386436,76386469 -6 + chr18 76387581 76387764 chr18,76387581,76387764,+,L3,LINE,CR1,2884,3096,-1003,76384698,76388767 -6 + chr18 76387764 76388498 chr18,76387764,76388498,+,LTR1F,LTR,ERV1,1,772,0,76387764,76388498 -6 + chr18 76388498 76388727 chr18,76388498,76388727,+,L3,LINE,CR1,3097,3348,-751,76385402,76389478 -6 + chr18 76389291 76389333 chr18,76389291,76389333,-,MER5B,DNA,hAT-Charlie,-129,49,7,76389162,76389339 +6 - chr18 76493323 76493359 chr18,76493323,76493359,+,(G)n,Simple_repeat,Simple_repeat,1,36,0,76493323,76493359 +6 + chr18 76530384 76530403 chr18,76530271,76530403,-,MIRb,SINE,MIR,-16,252,120,76530255,76530522 -2 - chr18 76557975 76558019 chr18,76557954,76558019,-,MLT1O,LTR,ERVL-MaLR,-8,534,472,76557946,76558490 -2 - chr18 76558443 76558577 chr18,76558443,76558577,-,L1MB8,LINE,L1,-23,6155,6038,76558420,76564614 -6 - chr18 76558577 76558877 chr18,76558577,76558877,-,AluSc,SINE,Alu,-14,295,1,76558563,76558877 -5 - chr18 76558877 76558923 chr18,76558877,76558923,-,L1MB8,LINE,L1,-137,6037,5982,76558740,76564904 -6 - chr18 76561956 76562166 chr18,76561956,76562166,-,L1PA4,LINE,L1,-252,5903,5695,76561704,76567860 -6 - chr18 76562162 76562203 chr18,76562162,76562203,+,L1PA2,LINE,L1,6115,6155,0,76556048,76562203 +6 + chr18 76602738 76602885 chr18,76602337,76602897,-,L3,LINE,CR1,-2,4097,3489,76602335,76606385 -5 - chr18 76624498 76624658 chr18,76624498,76624658,+,MER5A,DNA,hAT-Charlie,11,183,-6,76624488,76624664 +6 + chr18 76624660 76624765 chr18,76624660,76624765,-,MER5B,DNA,hAT-Charlie,-62,116,11,76624598,76624775 -6 - chr18 76624777 76624971 chr18,76624777,76624971,+,MER3,DNA,hAT-Charlie,1,205,-4,76624777,76624975 +6 + chr18 76625035 76625301 chr18,76625035,76625301,+,AluSc,SINE,Alu,23,288,-21,76625013,76625322 +6 + chr18 76625518 76625654 chr18,76625518,76625654,-,MER5A,DNA,hAT-Charlie,-18,171,35,76625500,76625688 -6 - chr18 76625815 76625940 chr18,76625815,76626117,+,AluY,SINE,Alu,1,297,-14,76625815,76626131 +5 + chr18 76691220 76691359 chr18,76691220,76691359,-,FLAM_A,SINE,Alu,0,142,1,76691220,76691359 -6 - chr18 76795331 76795395 chr18,76795331,76795395,+,MIRc,SINE,MIR,140,208,-60,76795192,76795455 -6 + chr18 76795423 76795658 chr18,76795423,76795677,+,AluSq2,SINE,Alu,2,296,-17,76795422,76795694 -2 + chr18 76816755 76816842 chr18,76816677,76817075,+,L1MEg,LINE,L1,626,1025,-5390,76816052,76822465 -3 + chr18 76822280 76822295 chr18,76822280,76822363,+,(GCCGCC)n,Simple_repeat,Simple_repeat,1,87,0,76822280,76822363 -1 + chr18 76974690 76974776 chr18,76974685,76974776,-,L3b,LINE,CR1,-208,5024,4934,76974477,76979709 -1 - chr18 76974792 76975053 chr18,76974792,76975074,-,AluJr,SINE,Alu,-20,292,2,76974772,76975075 -4 - chr18 76982137 76982196 chr18,76982063,76982196,-,MIRb,SINE,MIR,-5,263,120,76982058,76982315 -2 - chr18 76984122 76984162 chr18,76984122,76984276,-,MIRc,SINE,MIR,0,268,114,76984122,76984389 -5 - chr18 77005894 77006114 chr18,77005894,77006114,-,MIRc,SINE,MIR,-49,219,1,77005845,77006114 +6 - chr18 77006500 77006534 chr18,77006500,77006534,+,(CAGG)n,Simple_repeat,Simple_repeat,1,36,0,77006500,77006534 -6 + chr18 77108882 77109027 chr18,77108882,77109027,+,MIRb,SINE,MIR,28,191,-77,77108855,77109104 -6 + chr18 77110065 77110112 chr18,77110065,77110112,-,MIRb,SINE,MIR,-88,180,126,77109977,77110237 +6 - chr18 77110310 77110368 chr18,77110310,77110368,+,MER5A,DNA,hAT-Charlie,15,82,-107,77110296,77110475 -6 + chr18 77112766 77112945 chr18,77112766,77112945,+,MLT1C,LTR,ERVL-MaLR,4,177,-290,77112763,77113235 +6 + chr18 77112945 77113240 chr18,77112945,77113240,-,AluSq2,SINE,Alu,-19,294,1,77112926,77113240 -6 - chr18 77113240 77113525 chr18,77113240,77113525,+,MLT1C,LTR,ERVL-MaLR,178,454,-13,77113063,77113538 +6 + chr18 77113540 77113647 chr18,77113540,77113647,-,L2b,LINE,L2,-238,3137,3032,77113302,77116678 -6 - chr18 77185184 77185297 chr18,77185147,77185441,-,AluJo,SINE,Alu,-1,311,3,77185146,77185443 -3 - chr18 77205439 77205559 chr18,77205415,77205718,-,AluJo,SINE,Alu,-10,302,1,77205405,77205718 -3 - chr18 77421619 77422002 chr18,77415976,77422002,-,L1PA3,LINE,L1,0,6155,124,77415976,77422125 -1 - chr18 77983657 77983727 chr18,77983657,77983727,+,L2c,LINE,L2,3269,3341,-46,77980389,77983773 -6 + chr18 77989819 77989901 chr18,77989671,77989901,-,MIR,SINE,MIR,0,262,18,77989671,77989918 +4 - chr18 77990140 77990174 chr18,77990140,77990692,+,MER92B,LTR,ERV1,1,636,0,77990140,77990692 -2 + chr18 77993635 77993722 chr18,77993549,77993903,-,THE1B,LTR,ERVL-MaLR,0,364,1,77993549,77993903 +1 - chr18 78137223 78137336 chr18,78137030,78137409,+,MLT1A,LTR,ERVL-MaLR,1,374,0,78137030,78137409 +1 + chr18 78140375 78140438 chr18,78140375,78140438,+,L2c,LINE,L2,3096,3158,-229,78137280,78140667 +6 + chr18 78484678 78484799 chr18,78484626,78484799,-,MIRc,SINE,MIR,-1,267,83,78484625,78484881 -2 - chr18 78795612 78795817 chr18,78795299,78796033,+,L1MC4a,LINE,L1,7088,7870,-12,78788212,78796045 -5 + chr18 78977713 78977726 chr18,78977713,78977726,+,A-rich,Low_complexity,Low_complexity,1,20,-37,78977713,78977763 -6 + chr18 78977726 78977748 chr18,78977726,78977748,+,(AGT)n,Simple_repeat,Simple_repeat,1,22,0,78977726,78977748 -6 + chr18 78977748 78977770 chr18,78977748,78977770,+,A-rich,Low_complexity,Low_complexity,21,57,0,78977728,78977770 -6 + chr18 79085134 79085362 chr18,79084946,79085362,-,MSTB,LTR,ERVL-MaLR,-2,424,1,79084944,79085362 -1 - chr18 79086157 79086435 chr18,79086157,79086462,+,AluSx1,SINE,Alu,1,309,-3,79086157,79086465 +5 + chr18 79117207 79117614 chr18,79117201,79117614,-,L2a,LINE,L2,-22,3404,2934,79117179,79120547 -1 - chr18 79117801 79117920 chr18,79117801,79118158,-,L1ME3Cz,LINE,L1,-189,808,449,79117612,79118606 -5 - chr18 79144752 79144824 chr18,79144747,79144824,-,MER2,DNA,TcMar-Tigger,-268,77,1,79144479,79144824 -1 - chr18 79146804 79146884 chr18,79146804,79146884,+,L1MEf,LINE,L1,2040,2121,-4121,79144765,79151005 +6 + chr18 79146890 79146918 chr18,79146890,79149800,+,L1MEf,LINE,L1,2155,5385,-761,79144736,79150561 +5 + chr18 79254697 79254856 chr18,79254697,79255104,+,L2a,LINE,L2,2952,3421,-5,79251746,79255109 -1 + chr18 79352458 79352549 chr18,79352410,79352549,+,L1MEc,LINE,L1,37,189,-6211,79352374,79358760 +1 + chr18 79352777 79352916 chr18,79352777,79352916,+,L1MEc,LINE,L1,5252,5405,-914,79347526,79353830 +6 + chr18 79352924 79353378 chr18,79352924,79353378,+,L1ME1,LINE,L1,5281,5760,-684,79347644,79354062 +6 + chr18 79353686 79353754 chr18,79353686,79353754,+,L1ME1,LINE,L1,6033,6108,-71,79347654,79353825 +6 + chr18 79354292 79354567 chr18,79354292,79354596,+,AluJb,SINE,Alu,2,310,-2,79354291,79354598 +5 + chr18 79496760 79496981 chr18,79496760,79496981,-,MIRc,SINE,MIR,-23,245,27,79496737,79497007 -6 - chr18 79497173 79497373 chr18,79497173,79497373,+,L1M4a2,LINE,L1,1,218,-2438,79497173,79499811 +6 + chr18 79497608 79497863 chr18,79497608,79497863,+,L1M4,LINE,L1,593,886,-6631,79497016,79504494 +6 + chr18 79497930 79498348 chr18,79497930,79499724,+,L1M4,LINE,L1,891,2827,-3817,79497040,79503541 +5 + chr18 79578482 79578633 chr18,79578482,79578633,-,MIRb,SINE,MIR,-8,260,97,79578474,79578729 -6 - chr18 79578734 79578847 chr18,79578734,79578847,-,MLT1E2,LTR,ERVL-MaLR,-157,470,351,79578577,79579197 -6 - chr18 79579372 79579509 chr18,79579372,79579509,+,MER33,DNA,hAT-Charlie,95,232,-92,79579278,79579601 +6 + chr18 79579509 79579808 chr18,79579509,79579814,+,AluY,SINE,Alu,1,306,-5,79579509,79579819 +5 + chr18 79585256 79585290 chr18,79585256,79585437,-,MIR,SINE,MIR,-95,167,15,79585161,79585451 -4 - chr18 79638995 79639019 chr18,79638995,79639019,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,79638995,79639019 -6 + chr18 79641168 79641299 chr18,79640911,79641418,-,L1MB3,LINE,L1,-7,6176,5638,79640904,79647055 +3 - chr18 79677287 79677620 chr18,79677259,79677620,-,MER57B2,LTR,ERV1,0,403,15,79677259,79677634 +5 - chr18 79677627 79677704 chr18,79677627,79677704,-,HAL1M8,LINE,L1,-2808,183,104,79674819,79677807 +6 - chr18 79677815 79677956 chr18,79677815,79677956,-,HAL1M8,LINE,L1,-2836,155,2,79674979,79677957 +6 - chr18 79678158 79678575 chr18,79678158,79678575,+,LTR56,LTR,ERV1,7,444,-1,79678152,79678576 -6 + chr18 79678791 79678949 chr18,79678791,79678949,-,AluJo,SINE,Alu,-121,191,30,79678670,79678978 +6 - chr18 79702721 79702813 chr18,79702672,79702813,+,Tigger1,DNA,TcMar-Tigger,2218,2346,-72,79700455,79702885 -5 + chr18 79791300 79791425 chr18,79791267,79791425,+,L2c,LINE,L2,3229,3383,-4,79788039,79791429 +2 + chr18 79816381 79816418 chr18,79816381,79816418,+,(CCCCT)n,Simple_repeat,Simple_repeat,1,37,0,79816381,79816418 +6 + chr18 80062752 80063233 chr18,80062564,80063233,-,PABL_A-int,LTR,ERV1,-1136,3879,3198,80061428,80066430 -1 - chr18 80063233 80063526 chr18,80063233,80063526,-,AluSq,SINE,Alu,-20,293,1,80063213,80063526 -6 - chr18 80063526 80064591 chr18,80063526,80064591,-,PABL_A-int,LTR,ERV1,-3855,3961,2625,80059671,80067215 -6 - chr18 80064591 80064760 chr18,80064591,80064760,-,LTR57,LTR,ERVL,-239,172,1,80064352,80064760 -6 - chr18 80064977 80065257 chr18,80064977,80065257,-,AluSg4,SINE,Alu,-27,283,3,80064950,80065259 -6 - chr18 80065275 80065346 chr18,80065275,80065346,+,(TAA)n,Simple_repeat,Simple_repeat,1,74,0,80065275,80065346 +6 + chr18 80070238 80070546 chr18,80070236,80070546,+,AluSg,SINE,Alu,1,310,0,80070236,80070546 +2 + chr18 80080781 80080884 chr18,80080525,80080884,-,Merlin1_HS,DNA,Merlin,-1,1174,808,80080524,80081691 -2 - chr18 80080883 80081086 chr18,80080883,80081086,-,Merlin1_HS,DNA,Merlin,-772,403,202,80080111,80081287 -6 - chr18 80147924 80148209 chr18,80147833,80148209,+,MER66B,LTR,ERV1,74,485,-1,80147760,80148210 +1 + chr18 80148534 80148756 chr18,80148534,80148756,+,L3,LINE,CR1,2376,2633,-1466,80146159,80150222 +6 + chr18 80162289 80162393 chr18,80162289,80162393,+,L1MA3,LINE,L1,6200,6305,0,80156090,80162393 +6 + chr18 80169910 80169947 chr18,80169910,80169947,+,GA-rich,Low_complexity,Low_complexity,1,39,0,80169910,80169947 +6 + chr18 80171486 80171733 chr18,80171486,80172379,-,L1MB7,LINE,L1,-17,6167,5306,80171469,80177684 -5 - chr18 80184111 80184261 chr18,80184111,80184261,+,L1MB8,LINE,L1,3987,4146,-2000,80180125,80186261 +6 + chr18 80184297 80184454 chr18,80184297,80184454,+,L1MB8,LINE,L1,5660,5816,-358,80178638,80184812 +6 + chr18 80184662 80184954 chr18,80184662,80184954,+,L1MB8,LINE,L1,5865,6177,-1,80178798,80184955 +6 + chr18 80187760 80187942 chr18,80187760,80188062,-,Tigger3a,DNA,TcMar-Tigger,-30,318,1,80187730,80188062 -4 - chr19 68403 68661 chr19,68398,68661,+,AluSp,SINE,Alu,1,264,-49,68398,68710 +1 + chr19 68663 68745 chr19,68663,68745,-,L2c,LINE,L2,-285,3102,3025,68378,71769 -6 - chr19 68876 69126 chr19,68876,69126,+,MER33,DNA,hAT-Charlie,1,254,-70,68876,69196 +6 + chr19 71351 71399 chr19,71351,71399,+,(ACGCCC)n,Simple_repeat,Simple_repeat,1,50,0,71351,71399 +6 + chr19 71508 71646 chr19,71508,71805,+,L1MB3,LINE,L1,5883,6181,-2,65626,71807 +1 + chr19 71786 71805 chr19,71508,71805,+,L1MB3,LINE,L1,5883,6181,-2,65626,71807 +1 + chr19 71949 72139 chr19,71949,72139,-,MER53,DNA,hAT,0,193,1,71949,72139 -6 - chr19 72585 72718 chr19,72568,72740,+,MLT1A,LTR,ERVL-MaLR,181,349,-25,72388,72765 +5 + chr19 76173 76530 chr19,76173,76530,-,MLT1J2,LTR,ERVL-MaLR,0,448,41,76173,76570 +5 - chr19 76825 76975 chr19,76825,76975,-,MIRb,SINE,MIR,-13,255,91,76812,77065 +6 - chr19 76975 77090 chr19,76975,77102,+,AluJr,SINE,Alu,1,127,-185,76975,77287 -2 + chr19 176914 177051 chr19,176914,177051,+,LTR33B,LTR,ERVL,348,497,-6,176567,177057 +6 + chr19 177199 177302 chr19,177199,177302,-,L2,LINE,L2,-871,2548,2426,176328,179727 -6 - chr19 177433 177571 chr19,177433,177571,+,MER65D,LTR,ERV1,2,147,-326,177432,177897 +6 + chr19 177647 177913 chr19,177647,177928,+,MER65D,LTR,ERV1,157,450,-23,177491,177951 +5 + chr19 180231 180955 chr19,180231,180955,+,L1ME3E,LINE,L1,5259,6016,-226,174973,181181 -6 + chr19 201739 202093 chr19,201673,202093,-,MER1A,DNA,hAT-Charlie,-90,439,1,201583,202093 +5 - chr19 203871 203905 chr19,203803,203905,-,MER8,DNA,TcMar-Tigger,-2,237,137,203801,204041 +4 - chr19 203905 204069 chr19,203905,204097,+,AluJb,SINE,Alu,117,307,-5,203789,204102 -5 + chr19 204818 204833 chr19,204698,204833,+,AluJr,SINE,Alu,40,173,-139,204659,204972 -4 + chr19 205170 205447 chr19,205087,205507,-,MER1A,DNA,hAT-Charlie,-90,439,1,204997,205507 +5 - chr19 205455 205507 chr19,205087,205507,-,MER1A,DNA,hAT-Charlie,-90,439,1,204997,205507 +5 - chr19 205792 205872 chr19,205792,205872,+,FLAM_A,SINE,Alu,38,117,-25,205755,205897 -6 + chr19 205874 205946 chr19,205874,206164,+,AluJo,SINE,Alu,44,299,-13,205831,206177 -1 + chr19 208188 208249 chr19,208145,208249,+,L2b,LINE,L2,3053,3164,-211,205093,208460 -5 + chr19 208958 209014 chr19,208823,209255,-,MER1A,DNA,hAT-Charlie,-39,490,56,208784,209310 +5 - chr19 209225 209255 chr19,208823,209255,-,MER1A,DNA,hAT-Charlie,-39,490,56,208784,209310 +5 - chr19 209557 209614 chr19,209557,209614,-,LTR41,LTR,ERVL,0,768,713,209557,210326 +1 - chr19 209614 209712 chr19,209614,209905,+,AluJb,SINE,Alu,5,294,-18,209610,209923 -1 + chr19 209769 209866 chr19,209614,209905,+,AluJb,SINE,Alu,5,294,-18,209610,209923 -1 + chr19 211287 211375 chr19,211287,211375,+,L2b,LINE,L2,3294,3394,-32,207994,211407 -6 + chr19 211444 211603 chr19,211444,211603,+,MLT1D,LTR,ERVL-MaLR,72,213,-292,211373,211895 -6 + chr19 211604 211885 chr19,211604,211898,+,AluJr,SINE,Alu,5,294,-18,211600,211916 -5 + chr19 212151 212219 chr19,212151,212425,+,AluJr,SINE,Alu,1,301,-11,212151,212436 -1 + chr19 229731 230068 chr19,229731,230068,+,AluSq2,SINE,Alu,1,305,-8,229731,230076 -6 + chr19 233987 234146 chr19,233861,234163,+,AluYh3,SINE,Alu,2,301,-10,233860,234173 -1 + chr19 234426 234641 chr19,234291,234719,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,234291,234721 -5 + chr19 240756 240873 chr19,240597,240910,+,AluSx,SINE,Alu,1,312,0,240597,240910 -3 + chr19 241521 241647 chr19,241359,241647,+,AluSx1,SINE,Alu,2,283,-29,241358,241676 -4 + chr19 241647 241676 chr19,241647,241676,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,29,0,241647,241676 -6 + chr19 241701 241736 chr19,241701,241736,+,A-rich,Low_complexity,Low_complexity,1,39,0,241701,241736 -6 + chr19 241823 241890 chr19,241823,241890,-,MIRb,SINE,MIR,-100,168,100,241723,241989 +6 - chr19 246397 246515 chr19,246006,247536,-,TAR1,Satellite,telo,-43,1864,1,245963,247536 +1 - chr19 248685 248920 chr19,248309,248920,+,L1MC3,LINE,L1,4898,5546,-2239,243412,251159 -5 + chr19 248925 249489 chr19,248925,249489,+,MER34C_,LTR,ERV1,1,583,-2,248925,249491 -6 + chr19 249494 249682 chr19,249494,249682,+,L1MC3,LINE,L1,5577,5765,-2020,243918,251702 -6 + chr19 249895 250542 chr19,249895,250542,+,MER72,LTR,ERV1,1,683,-39,249895,250581 -6 + chr19 250542 250842 chr19,250542,250842,+,AluSq2,SINE,Alu,11,309,-4,250532,250846 -6 + chr19 250842 250895 chr19,250842,250895,+,MER72,LTR,ERV1,684,722,0,250159,250895 -6 + chr19 251142 251254 chr19,251142,251254,+,MER34B-int,LTR,ERV1,500,623,-4733,250643,255987 -6 + chr19 251295 251571 chr19,251295,251631,+,MER31-int,LTR,ERV1,173,515,-4421,251123,256052 -1 + chr19 398757 398933 chr19,398757,398933,-,MER20,DNA,hAT-Charlie,-13,206,18,398744,398950 -6 - chr19 490073 490353 chr19,490073,490388,+,AluSq2,SINE,Alu,1,312,-1,490073,490389 -2 + chr19 501553 501622 chr19,501553,501622,-,MIR3,SINE,MIR,-29,179,106,501524,501727 +6 - chr19 567212 567281 chr19,566854,567281,-,HERV3-int,LTR,ERV1,-11,8415,7994,566843,575274 +5 - chr19 567307 567648 chr19,567307,567724,-,HERV3-int,LTR,ERV1,-2112,6314,5819,565195,573542 +5 - chr19 571440 571615 chr19,571376,571615,-,HERVIP10B3-int,LTR,ERV1,-7313,290,18,564063,571632 +4 - chr19 571640 571745 chr19,571640,571898,-,LTR10B2,LTR,ERV1,-16,487,207,571624,572104 +1 - chr19 572109 572228 chr19,572109,572238,-,AluJo,SINE,Alu,-188,124,1,571921,572238 +1 - chr19 637105 637333 chr19,637053,637333,-,MLT1D,LTR,ERVL-MaLR,-21,484,174,637032,637506 +5 - chr19 663482 663667 chr19,663474,663667,+,L2a,LINE,L2,2922,3167,-259,660553,663926 +1 + chr19 664038 664342 chr19,664038,664342,-,AluSx4,SINE,Alu,-8,302,1,664030,664342 -6 - chr19 664352 664511 chr19,664352,664554,-,L2b,LINE,L2,0,3375,3093,664352,667646 -4 - chr19 667621 667720 chr19,667621,667720,-,MIR,SINE,MIR,-73,189,89,667548,667808 -6 - chr19 667941 668063 chr19,667941,668089,+,AluSz,SINE,Alu,1,134,-178,667941,668267 +5 + chr19 781311 781456 chr19,781311,781456,+,AluSx,SINE,Alu,1,145,-167,781311,781623 -6 + chr19 781456 781749 chr19,781456,781749,+,AluY,SINE,Alu,1,287,-24,781456,781773 -6 + chr19 781751 781780 chr19,781751,781780,+,(AAAAG)n,Simple_repeat,Simple_repeat,1,29,0,781751,781780 -6 + chr19 781780 781862 chr19,781780,781918,+,AluSx,SINE,Alu,146,293,-19,781635,781937 -1 + chr19 784989 785080 chr19,784989,785251,+,AluSp,SINE,Alu,18,295,-18,784972,785269 +5 + chr19 928720 928766 chr19,928687,928766,-,MIRc,SINE,MIR,-91,177,100,928596,928865 +4 - chr19 956485 956497 chr19,956452,956497,+,G-rich,Low_complexity,Low_complexity,1,46,0,956452,956497 +1 + chr19 958042 958145 chr19,957864,958145,+,AluSx1,SINE,Alu,36,312,0,957829,958145 +2 + chr19 999800 1000000 chr19,999800,1000000,-,AluSx1,SINE,Alu,0,312,113,999800,1000112 +6 - chr19 1000000 1000109 chr19,1000000,1000109,-,AluSx3,SINE,Alu,-201,110,2,999799,1000110 +6 - chr19 1002046 1002161 chr19,1002046,1002385,+,AluJo,SINE,Alu,1,312,0,1002046,1002385 -2 + chr19 1002719 1002757 chr19,1002719,1002974,-,L2b,LINE,L2,-172,3203,2942,1002547,1005915 +1 - chr19 1038727 1038873 chr19,1038590,1038873,-,AluSq,SINE,Alu,-21,292,1,1038569,1038873 +5 - chr19 1239364 1239478 chr19,1239161,1239478,-,AluJb,SINE,Alu,-1,311,1,1239160,1239478 -2 - chr19 1321225 1321277 chr19,1320961,1321277,-,AluY,SINE,Alu,-5,306,1,1320956,1321277 -1 - chr19 1321277 1321627 chr19,1321277,1321627,-,L1MB8,LINE,L1,-70,6108,5733,1321207,1327359 -6 - chr19 1322653 1322846 chr19,1322653,1323076,+,(AGAGAC)n,Simple_repeat,Simple_repeat,1,448,0,1322653,1323076 +5 + chr19 1372238 1372343 chr19,1372138,1372343,+,MER20,DNA,hAT-Charlie,3,219,0,1372136,1372343 -5 + chr19 1372476 1372782 chr19,1372476,1372782,+,AluSg,SINE,Alu,1,301,-9,1372476,1372791 -6 + chr19 1392170 1392344 chr19,1392150,1392344,-,AluJr,SINE,Alu,-10,302,105,1392140,1392448 +5 - chr19 1392348 1392681 chr19,1392348,1392681,-,L1MB7,LINE,L1,-44,6140,5778,1392304,1398458 +6 - chr19 1393888 1393921 chr19,1393783,1393921,-,MER53,DNA,hAT,-33,160,28,1393750,1393948 +4 - chr19 1394975 1395011 chr19,1394975,1395011,+,(CCTC)n,Simple_repeat,Simple_repeat,1,37,0,1394975,1395011 -6 + chr19 1395488 1395521 chr19,1395488,1395521,+,(CGC)n,Simple_repeat,Simple_repeat,1,33,0,1395488,1395521 -6 + chr19 1395886 1395939 chr19,1395886,1395939,+,(TGTGGCC)n,Simple_repeat,Simple_repeat,1,56,0,1395886,1395939 -6 + chr19 1441495 1441644 chr19,1441495,1441644,-,FRAM,SINE,Alu,-11,165,1,1441484,1441644 -6 - chr19 1441673 1441938 chr19,1441673,1441959,+,AluSq,SINE,Alu,2,304,-9,1441672,1441968 +5 + chr19 1457670 1457697 chr19,1457551,1457697,+,AluJo,SINE,Alu,137,282,-30,1457415,1457727 -5 + chr19 1458450 1458580 chr19,1458450,1458713,+,AluJo,SINE,Alu,1,292,-20,1458450,1458733 -1 + chr19 1508660 1508757 chr19,1508660,1508757,-,MIR3,SINE,MIR,-85,123,28,1508575,1508784 -6 - chr19 1508894 1508925 chr19,1508852,1508925,-,L2a,LINE,L2,-2,3424,3348,1508850,1512272 -2 - chr19 1748310 1748341 chr19,1748310,1748358,+,(GCCAG)n,Simple_repeat,Simple_repeat,1,49,0,1748310,1748358 +4 + chr19 1815845 1815873 chr19,1815845,1815918,+,G-rich,Low_complexity,Low_complexity,1,75,0,1815845,1815918 +5 + chr19 1822860 1823000 chr19,1822860,1823000,+,MER5A,DNA,hAT-Charlie,14,161,-28,1822847,1823028 +6 + chr19 1823405 1823473 chr19,1823405,1823473,-,MIR1_Amn,SINE,MIR,-78,152,82,1823327,1823554 -6 - chr19 1824444 1824542 chr19,1824444,1824782,+,HSMAR2,DNA,TcMar-Mariner,3,327,-975,1824442,1825757 +5 + chr19 1853414 1853458 chr19,1853414,1853458,+,(AGGCC)n,Simple_repeat,Simple_repeat,1,45,0,1853414,1853458 +6 + chr19 1875105 1875209 chr19,1875105,1875288,+,L1M5,LINE,L1,5570,5765,-359,1869536,1875647 +4 + chr19 1875105 1875288 chr19,1875105,1875288,+,L1M5,LINE,L1,5570,5765,-359,1869536,1875647 -6 + chr19 1875428 1875572 chr19,1875428,1875572,+,L1ME4b,LINE,L1,717,862,-30,1874712,1875602 -6 + chr19 1952531 1952589 chr19,1952324,1952589,-,AluSx1,SINE,Alu,-14,298,35,1952310,1952623 +5 - chr19 1952977 1953011 chr19,1952977,1953033,+,Alu,SINE,Alu,245,300,-1,1952733,1953034 -2 + chr19 1990296 1990370 chr19,1990296,1990480,+,MER58A,DNA,hAT-Charlie,4,191,-33,1990293,1990513 +5 + chr19 2002580 2002592 chr19,2002360,2002592,+,MER21C,LTR,ERVL,582,830,-108,2001779,2002700 -5 + chr19 2002592 2002904 chr19,2002592,2002904,+,AluY,SINE,Alu,2,309,-2,2002591,2002906 -6 + chr19 2002904 2003009 chr19,2002904,2003009,+,MER21C,LTR,ERVL,831,929,-9,2002074,2003018 -6 + chr19 2003068 2003185 chr19,2003068,2003185,+,FLAM_C,SINE,Alu,35,140,-162,2003034,2003347 -6 + chr19 2003191 2003487 chr19,2003191,2003487,+,AluSg,SINE,Alu,1,294,-16,2003191,2003503 -6 + chr19 2003487 2003581 chr19,2003487,2003798,+,AluSp,SINE,Alu,1,312,-1,2003487,2003799 -1 + chr19 2212029 2212206 chr19,2211973,2212206,-,LTR71B,LTR,ERV1,0,610,370,2211973,2212575 +5 - chr19 2212206 2212459 chr19,2212206,2212459,-,AluY,SINE,Alu,-56,255,3,2212150,2212461 +6 - chr19 2212459 2212811 chr19,2212459,2212811,-,LTR71B,LTR,ERV1,-241,369,2,2212218,2212812 +6 - chr19 2458941 2459100 chr19,2458941,2459129,+,AluJo,SINE,Alu,126,304,-8,2458816,2459137 -2 + chr19 2461991 2462050 chr19,2461991,2462050,+,L2b,LINE,L2,3036,3094,-281,2458956,2462331 -6 + chr19 2610162 2610325 chr19,2610162,2610325,-,AluJo,SINE,Alu,-14,298,138,2610148,2610462 +6 - chr19 2610325 2610641 chr19,2610325,2610641,-,AluSx1,SINE,Alu,0,312,1,2610325,2610641 +6 - chr19 2610641 2610760 chr19,2610641,2610760,-,AluJo,SINE,Alu,-175,137,21,2610466,2610780 +6 - chr19 2611554 2611861 chr19,2611554,2611861,+,AluJb,SINE,Alu,1,308,-4,2611554,2611865 -6 + chr19 2632579 2632702 chr19,2632579,2632702,-,MER20,DNA,hAT-Charlie,-4,215,89,2632575,2632790 -6 - chr19 2632705 2632799 chr19,2632705,2632799,+,AluJr4,SINE,Alu,219,312,0,2632487,2632799 +6 + chr19 2641838 2641964 chr19,2641653,2641964,-,AluSx,SINE,Alu,-2,310,1,2641651,2641964 +5 - chr19 2641964 2642046 chr19,2641964,2642046,+,MLT1D,LTR,ERVL-MaLR,411,482,-23,2641554,2642069 -6 + chr19 2642365 2642662 chr19,2642365,2642662,-,AluJb,SINE,Alu,-12,300,4,2642353,2642665 +6 - chr19 2642667 2642793 chr19,2642667,2642793,-,AluJo,SINE,Alu,-187,125,1,2642480,2642793 +6 - chr19 2643696 2643853 chr19,2643696,2643965,-,L1ME1,LINE,L1,-7,6171,5882,2643689,2649846 +1 - chr19 2700689 2700750 chr19,2700676,2700750,-,MIRc,SINE,MIR,-84,184,111,2700592,2700860 +5 - chr19 2728225 2728531 chr19,2728225,2728531,-,AluSx1,SINE,Alu,-6,306,1,2728219,2728531 +6 - chr19 2728718 2728921 chr19,2728718,2728921,-,MER20,DNA,hAT-Charlie,-2,217,3,2728716,2728923 +6 - chr19 2847227 2847350 chr19,2847221,2847350,-,MLT1C,LTR,ERVL-MaLR,-186,281,155,2847035,2847504 +5 - chr19 2847352 2847384 chr19,2847352,2847495,+,L1PA4,LINE,L1,6002,6144,-11,2841351,2847506 -2 + chr19 2915146 2915230 chr19,2915058,2915230,-,MER77,LTR,ERVL,-414,190,16,2914644,2915245 +5 - chr19 2949206 2949353 chr19,2949206,2949353,+,MLT1B,LTR,ERVL-MaLR,2,160,-230,2949205,2949583 +6 + chr19 2949348 2949507 chr19,2949348,2949507,-,MER20,DNA,hAT-Charlie,-64,155,1,2949284,2949507 -6 - chr19 2949641 2949782 chr19,2949641,2949782,-,MIRc,SINE,MIR,-72,196,54,2949569,2949835 -6 - chr19 2949858 2950319 chr19,2949858,2950319,+,LTR65,LTR,ERV1,1,524,-145,2949858,2950464 +6 + chr19 3053118 3053148 chr19,3053118,3053148,+,A-rich,Low_complexity,Low_complexity,1,30,0,3053118,3053148 +6 + chr19 3141576 3141696 chr19,3141390,3141696,-,AluSx,SINE,Alu,-7,305,1,3141383,3141696 +5 - chr19 3141703 3141845 chr19,3141703,3141845,-,MIR,SINE,MIR,-89,173,8,3141614,3141852 +6 - chr19 3141886 3141985 chr19,3141886,3141985,-,MIR3,SINE,MIR,-72,136,37,3141814,3142021 +6 - chr19 3143099 3143193 chr19,3143099,3143304,+,MIRb,SINE,MIR,41,268,0,3143059,3143304 -2 + chr19 3148657 3148705 chr19,3148657,3148705,-,OldhAT1,DNA,hAT-Ac,-927,1921,1872,3147730,3150576 +6 - chr19 3148867 3148906 chr19,3148867,3148906,+,(CAGGG)n,Simple_repeat,Simple_repeat,1,40,0,3148867,3148906 -6 + chr19 3148963 3149623 chr19,3148963,3149623,+,(CA)n,Simple_repeat,Simple_repeat,1,663,0,3148963,3149623 -6 + chr19 3149725 3149790 chr19,3149725,3149828,+,MIR1_Amn,SINE,MIR,77,170,-92,3149649,3149920 -2 + chr19 3302790 3303003 chr19,3302711,3303065,-,MLT1F,LTR,ERVL-MaLR,0,548,170,3302711,3303234 +1 - chr19 3355554 3355659 chr19,3355548,3355659,-,FLAM_C,SINE,Alu,0,133,26,3355548,3355684 +5 - chr19 3355775 3355923 chr19,3355775,3355923,+,MER106B,DNA,hAT-Charlie,896,1043,-16,3354880,3355939 -6 + chr19 3355929 3355955 chr19,3355929,3356248,-,AluY,SINE,Alu,0,311,1,3355929,3356248 +1 - chr19 3371395 3371411 chr19,3371321,3371411,-,AluSz6,SINE,Alu,-9,303,214,3371312,3371624 -1 - chr19 3371437 3371483 chr19,3371437,3371483,+,L2b,LINE,L2,3319,3364,-11,3368119,3371494 +6 + chr19 3371486 3371519 chr19,3371486,3371519,+,(GAAT)n,Simple_repeat,Simple_repeat,1,33,0,3371486,3371519 +6 + chr19 3558369 3558418 chr19,3558369,3558418,-,AluJo,SINE,Alu,0,312,276,3558369,3558693 -6 - chr19 3558418 3558486 chr19,3558418,3558722,+,AluSq2,SINE,Alu,4,309,-4,3558415,3558726 +5 + chr19 3567278 3567293 chr19,3567120,3567293,+,AluJo,SINE,Alu,134,304,-8,3566987,3567301 -5 + chr19 3567417 3567548 chr19,3567417,3567548,-,FLAM_C,SINE,Alu,-12,131,1,3567405,3567548 +6 - chr19 3567558 3567863 chr19,3567558,3567863,-,AluSz6,SINE,Alu,-7,305,1,3567551,3567863 +6 - chr19 3567867 3567959 chr19,3567867,3568056,-,AluSx,SINE,Alu,-3,309,120,3567864,3568175 +1 - chr19 3611766 3611793 chr19,3611729,3611793,-,MIR,SINE,MIR,-101,167,104,3611628,3611896 -2 - chr19 3613228 3613274 chr19,3613228,3613274,+,(CCTCGC)n,Simple_repeat,Simple_repeat,1,46,0,3613228,3613274 +6 + chr19 3674004 3674026 chr19,3673981,3674026,+,MLT1H,LTR,ERVL-MaLR,136,180,-369,3673846,3674395 +2 + chr19 3674184 3674295 chr19,3674184,3674340,+,MLT1H,LTR,ERVL-MaLR,379,549,0,3673806,3674340 +5 + chr19 3754678 3754748 chr19,3754678,3754962,-,AluSx1,SINE,Alu,-24,288,5,3754654,3754966 +2 - chr19 3755511 3755556 chr19,3755511,3755827,+,AluSx,SINE,Alu,1,310,-2,3755511,3755829 +4 + chr19 3756242 3756504 chr19,3756196,3756504,+,AluSx1,SINE,Alu,1,308,-4,3756196,3756508 +2 + chr19 3756452 3756504 chr19,3756196,3756504,+,AluSx1,SINE,Alu,1,308,-4,3756196,3756508 -4 + chr19 3756504 3756517 chr19,3756504,3756573,+,MER33,DNA,hAT-Charlie,160,233,-91,3756345,3756664 +5 + chr19 3756504 3756573 chr19,3756504,3756573,+,MER33,DNA,hAT-Charlie,160,233,-91,3756345,3756664 -5 + chr19 3756573 3756659 chr19,3756573,3756740,+,AluSx3,SINE,Alu,133,295,-16,3756441,3756756 -1 + chr19 4061887 4061952 chr19,4061887,4061952,+,L3,LINE,CR1,3946,4005,-94,4057942,4062046 -6 + chr19 4246339 4246484 chr19,4246207,4246484,+,MER41A,LTR,ERV1,278,554,0,4245930,4246484 -5 + chr19 4339577 4339619 chr19,4339483,4339806,-,AluJb,SINE,Alu,-19,293,2,4339464,4339807 -1 - chr19 4347244 4347354 chr19,4347243,4347537,-,AluY,SINE,Alu,-15,296,2,4347228,4347538 +5 - chr19 4353812 4353823 chr19,4353564,4353823,-,AluJb,SINE,Alu,-15,297,40,4353549,4353862 +4 - chr19 4353834 4353981 chr19,4353834,4353981,-,AluJb,SINE,Alu,-18,294,138,4353816,4354118 +6 - chr19 4356637 4356939 chr19,4356633,4356939,-,AluSz,SINE,Alu,-5,307,1,4356628,4356939 +5 - chr19 4356946 4357053 chr19,4356946,4357053,-,L2a,LINE,L2,-15,3411,3305,4356931,4360357 +6 - chr19 4357053 4357173 chr19,4357053,4357173,+,L2b,LINE,L2,3238,3361,-26,4353816,4357199 -6 + chr19 4357687 4357752 chr19,4357687,4357752,+,MIRc,SINE,MIR,117,182,-80,4357571,4357832 -6 + chr19 4358436 4358448 chr19,4358436,4358508,+,MER113A,DNA,hAT-Charlie,49,117,-197,4358388,4358705 -1 + chr19 4364290 4364432 chr19,4364290,4364432,-,AluJr,SINE,Alu,-21,291,138,4364269,4364569 -6 - chr19 4364444 4364640 chr19,4364444,4364726,-,AluSg,SINE,Alu,-24,286,3,4364420,4364728 -5 - chr19 4429866 4429996 chr19,4429866,4429996,+,MER102c,DNA,hAT-Charlie,17,158,-173,4429850,4430169 -6 + chr19 4448100 4448167 chr19,4448100,4448167,-,MIR3,SINE,MIR,-54,154,88,4448046,4448254 -6 - chr19 4449947 4450240 chr19,4449947,4450240,+,AluSc,SINE,Alu,1,298,-11,4449947,4450251 +6 + chr19 4450280 4450477 chr19,4450280,4450477,+,L1ME4b,LINE,L1,5073,5281,-843,4445208,4451320 +6 + chr19 4450477 4450788 chr19,4450477,4450788,+,AluY,SINE,Alu,2,311,0,4450476,4450788 +6 + chr19 4450788 4450836 chr19,4450788,4451036,+,L1ME4b,LINE,L1,127,319,-573,4450662,4451609 +5 + chr19 4454798 4454957 chr19,4454798,4454957,-,MIRb,SINE,MIR,-8,260,90,4454790,4455046 -6 - chr19 4458123 4458231 chr19,4458123,4458424,+,AluJb,SINE,Alu,6,299,-13,4458118,4458437 -2 + chr19 4458584 4458759 chr19,4458584,4458892,+,AluY,SINE,Alu,1,308,-3,4458584,4458895 -1 + chr19 4470501 4470613 chr19,4470408,4470623,+,L2b,LINE,L2,3040,3252,-135,4467369,4470758 -5 + chr19 4471248 4471314 chr19,4471037,4471314,-,AluSg,SINE,Alu,-21,289,1,4471016,4471314 +1 - chr19 4471376 4471460 chr19,4471376,4471460,-,MIR1_Amn,SINE,MIR,-66,164,85,4471310,4471544 +6 - chr19 4654964 4655022 chr19,4654933,4655205,+,MER102c,DNA,hAT-Charlie,2,294,-47,4654932,4655252 -5 + chr19 4655192 4655205 chr19,4654933,4655205,+,MER102c,DNA,hAT-Charlie,2,294,-47,4654932,4655252 -5 + chr19 4683099 4683118 chr19,4683099,4683118,+,(CCT)n,Simple_repeat,Simple_repeat,1,19,0,4683099,4683118 +6 + chr19 4683818 4683912 chr19,4683818,4683912,+,MIRb,SINE,MIR,65,161,-107,4683754,4684019 +6 + chr19 4684039 4684402 chr19,4684039,4684402,+,MLT1A1,LTR,ERVL-MaLR,1,406,-2,4684039,4684404 +6 + chr19 4684846 4684907 chr19,4684846,4684907,+,(GCCGG)n,Simple_repeat,Simple_repeat,1,64,0,4684846,4684907 +6 + chr19 4770085 4770200 chr19,4769905,4770200,-,AluSg,SINE,Alu,-15,295,1,4769890,4770200 -1 - chr19 4770348 4770449 chr19,4770288,4770491,-,MIRb,SINE,MIR,-35,233,27,4770253,4770517 -1 - chr19 4772132 4772501 chr19,4772125,4772501,+,L2b,LINE,L2,3023,3374,-1,4769103,4772502 +5 + chr19 4772504 4772533 chr19,4772504,4772546,+,(ATCA)n,Simple_repeat,Simple_repeat,1,42,0,4772504,4772546 +5 + chr19 4838572 4838880 chr19,4838572,4838880,-,AluSq2,SINE,Alu,-5,308,1,4838567,4838880 -6 - chr19 5178287 5178317 chr19,5178287,5178317,+,(ATC)n,Simple_repeat,Simple_repeat,1,30,0,5178287,5178317 +6 + chr19 5178332 5178464 chr19,5178332,5178640,+,AluSx1,SINE,Alu,1,303,-9,5178332,5178649 +5 + chr19 5294247 5294385 chr19,5294239,5294385,-,MIR,SINE,MIR,-87,175,8,5294152,5294392 -1 - chr19 5558332 5558482 chr19,5558332,5558482,-,L2c,LINE,L2,-188,3199,3055,5558144,5561536 +6 - chr19 5558768 5558819 chr19,5558768,5558819,+,MIR,SINE,MIR,78,144,-118,5558691,5558937 -6 + chr19 5558884 5558955 chr19,5558884,5558955,+,GA-rich,Low_complexity,Low_complexity,1,69,0,5558884,5558955 -6 + chr19 5558955 5558981 chr19,5558955,5558981,+,(GGGAA)n,Simple_repeat,Simple_repeat,1,26,0,5558955,5558981 -6 + chr19 5558981 5558994 chr19,5558981,5558994,+,GA-rich,Low_complexity,Low_complexity,70,82,0,5558912,5558994 -6 + chr19 5559056 5559146 chr19,5559056,5559146,-,UCON88,Unknown,Unknown,-1,111,20,5559055,5559165 +6 - chr19 5559332 5559634 chr19,5559332,5559634,-,AluY,SINE,Alu,-10,301,1,5559322,5559634 +6 - chr19 5560897 5561053 chr19,5560897,5561053,-,L2b,LINE,L2,-174,3201,3037,5560723,5564089 +5 - chr19 5561632 5561714 chr19,5561596,5561714,-,AluSc,SINE,Alu,-6,303,186,5561590,5561899 +5 - chr19 5567902 5567926 chr19,5567902,5567926,+,(CGGCCGCC)n,Simple_repeat,Simple_repeat,1,113,-39,5567902,5567965 -6 + chr19 5567926 5568034 chr19,5567926,5568045,+,(CGCC)n,Simple_repeat,Simple_repeat,1,123,0,5567926,5568045 -1 + chr19 5847467 5847625 chr19,5847388,5847625,+,LTR7B,LTR,ERV1,226,463,-1,5847163,5847626 +1 + chr19 5847625 5847768 chr19,5847625,5849489,+,HERVH-int,LTR,ERV1,1,1990,-5723,5847625,5855212 +4 + chr19 5852504 5852530 chr19,5851939,5852530,+,LTR7B,LTR,ERV1,3,464,0,5851937,5852530 +2 + chr19 5852530 5852673 chr19,5852530,5852959,+,HERVH-int,LTR,ERV1,1,459,-7254,5852530,5860213 +4 + chr19 5854571 5854662 chr19,5853576,5854713,+,HERVH-int,LTR,ERV1,1109,2183,-5530,5852468,5860243 +3 + chr19 5857616 5857653 chr19,5857251,5857653,+,LTR7B,LTR,ERV1,85,464,0,5857167,5857653 +2 + chr19 5857693 5857792 chr19,5857693,5857792,-,L2c,LINE,L2,-236,3151,3044,5857457,5860835 -6 - chr19 5857793 5857830 chr19,5857793,5857830,+,AluYi6,SINE,Alu,3,39,-272,5857791,5858102 +6 + chr19 5857832 5858239 chr19,5857832,5858275,+,LTR7C,LTR,ERV1,1,469,-2,5857832,5858277 +5 + chr19 5901409 5901490 chr19,5901409,5901490,+,MIRc,SINE,MIR,90,168,-100,5901320,5901590 +5 + chr19 5911670 5911768 chr19,5911670,5911978,-,AluSz,SINE,Alu,-10,302,1,5911660,5911978 +2 - chr19 5913502 5913711 chr19,5913410,5913711,-,AluSg,SINE,Alu,-9,301,1,5913401,5913711 +4 - chr19 5913739 5913856 chr19,5913739,5913856,-,AluJo,SINE,Alu,-194,118,1,5913545,5913856 +6 - chr19 6012120 6012139 chr19,6011925,6012139,+,MER58A,DNA,hAT-Charlie,1,224,0,6011925,6012139 +2 + chr19 6067953 6068073 chr19,6067921,6068073,-,AmnSINE2,SINE,tRNA-Deu,-186,172,16,6067735,6068088 -1 - chr19 6068277 6068419 chr19,6068277,6069986,-,L2a,LINE,L2,0,3426,1688,6068277,6071673 -4 - chr19 6125534 6125788 chr19,6125315,6125788,-,Charlie17b,DNA,hAT-Charlie,-345,859,355,6124970,6126142 -2 - chr19 6263068 6263204 chr19,6262901,6263204,+,AluSz,SINE,Alu,1,303,-9,6262901,6263213 -5 + chr19 6343835 6343961 chr19,6343835,6344022,+,L1M5,LINE,L1,5587,5772,-470,6338249,6344492 -2 + chr19 6353379 6353467 chr19,6353379,6353485,+,FLAM_C,SINE,Alu,28,133,-10,6353352,6353495 -2 + chr19 6360163 6360235 chr19,6360062,6360235,+,L2c,LINE,L2,3025,3201,-186,6357038,6360421 -4 + chr19 6390301 6390400 chr19,6390265,6390573,+,AluY,SINE,Alu,1,308,-3,6390265,6390576 -1 + chr19 6469465 6469583 chr19,6469334,6469583,-,AluJo,SINE,Alu,-17,295,1,6469317,6469583 -1 - chr19 6470093 6470126 chr19,6470093,6470126,+,(AATA)n,Simple_repeat,Simple_repeat,1,35,0,6470093,6470126 +6 + chr19 6494351 6494381 chr19,6494351,6494381,+,GA-rich,Low_complexity,Low_complexity,1,30,0,6494351,6494381 +6 + chr19 6716386 6716535 chr19,6716227,6716535,-,AluJo,SINE,Alu,-21,291,1,6716206,6716535 +5 - chr19 6716613 6717255 chr19,6716613,6717255,-,L2a,LINE,L2,-5,3421,2772,6716608,6720026 +6 - chr19 6717272 6717324 chr19,6717272,6717324,-,MIR1_Amn,SINE,MIR,-72,158,106,6717200,6717429 +6 - chr19 6717408 6717443 chr19,6717408,6717443,+,(TG)n,Simple_repeat,Simple_repeat,1,496,0,6717408,6717443 -6 + chr19 6717443 6717742 chr19,6717443,6717863,+,(GTGTGTT)n,Simple_repeat,Simple_repeat,1,434,0,6717443,6717863 -1 + chr19 6748357 6748485 chr19,6748357,6748485,+,MIR,SINE,MIR,5,143,-119,6748353,6748604 -6 + chr19 6748512 6748811 chr19,6748512,6748811,+,AluSz6,SINE,Alu,1,301,-11,6748512,6748822 -6 + chr19 6895098 6895415 chr19,6895098,6895415,-,MLT1J,LTR,ERVL-MaLR,-152,360,5,6894946,6895419 +6 - chr19 6895509 6895624 chr19,6895509,6895624,+,MER5A1,DNA,hAT-Charlie,10,124,-42,6895500,6895666 -6 + chr19 6895693 6895838 chr19,6895693,6895838,-,MER5A1,DNA,hAT-Charlie,-1,165,1,6895692,6895838 +6 - chr19 6895895 6896309 chr19,6895895,6896309,-,MLT1C,LTR,ERVL-MaLR,-43,424,1,6895852,6896309 +6 - chr19 6896638 6896769 chr19,6896638,6896769,-,L1P4a,LINE,L1,-3953,4202,4071,6892685,6900839 +6 - chr19 6896771 6896814 chr19,6896771,6896814,+,(CTTC)n,Simple_repeat,Simple_repeat,1,46,0,6896771,6896814 -6 + chr19 7019168 7019197 chr19,7019168,7019197,+,(CTGC)n,Simple_repeat,Simple_repeat,1,29,0,7019168,7019197 -6 + chr19 7390522 7390538 chr19,7390224,7390538,+,AluSz,SINE,Alu,1,312,0,7390224,7390538 -5 + chr19 7390615 7390638 chr19,7390615,7390638,+,(ATC)n,Simple_repeat,Simple_repeat,1,23,0,7390615,7390638 -6 + chr19 7392591 7392707 chr19,7392417,7392744,+,AluSz,SINE,Alu,1,312,0,7392417,7392744 -3 + chr19 7520439 7520460 chr19,7520439,7520489,+,(GCA)n,Simple_repeat,Simple_repeat,1,50,0,7520439,7520489 -1 + chr19 7636698 7636718 chr19,7636698,7636718,+,(GCT)n,Simple_repeat,Simple_repeat,1,20,0,7636698,7636718 -6 + chr19 7900273 7900308 chr19,7900273,7900308,+,(GCTGGA)n,Simple_repeat,Simple_repeat,1,35,0,7900273,7900308 -6 + chr19 7901394 7901549 chr19,7901394,7901549,+,MER5A,DNA,hAT-Charlie,1,167,-22,7901394,7901571 -6 + chr19 7901595 7901727 chr19,7901595,7901727,+,FLAM_C,SINE,Alu,1,133,-10,7901595,7901737 -6 + chr19 7901747 7901894 chr19,7901747,7901894,-,Charlie4z,DNA,hAT-Charlie,-4,163,17,7901743,7901910 +6 - chr19 7902072 7902362 chr19,7902072,7902362,+,AluJo,SINE,Alu,1,278,-34,7902072,7902396 -6 + chr19 7902362 7902659 chr19,7902362,7902659,-,AluSg7,SINE,Alu,-6,303,4,7902356,7902662 +6 - chr19 7913439 7913474 chr19,7913439,7913474,+,GA-rich,Low_complexity,Low_complexity,1,36,0,7913439,7913474 -6 + chr19 7918652 7918710 chr19,7918536,7918710,-,MIR,SINE,MIR,-36,226,43,7918500,7918752 +5 - chr19 7959891 7959922 chr19,7959848,7959922,+,(TAGAGG)n,Simple_repeat,Simple_repeat,1,76,0,7959848,7959922 +2 + chr19 8015653 8015931 chr19,8015629,8015931,-,AluSx1,SINE,Alu,-10,302,1,8015619,8015931 -2 - chr19 8015931 8016025 chr19,8015931,8016098,+,Tigger2a,DNA,TcMar-Tigger,203,359,-75,8015729,8016173 +5 + chr19 8222153 8222179 chr19,8221862,8222179,-,AluY,SINE,Alu,0,311,1,8221862,8222179 +5 - chr19 8222182 8222209 chr19,8222182,8222479,-,AluSx1,SINE,Alu,-17,295,1,8222165,8222479 +2 - chr19 8239358 8239429 chr19,8239119,8239429,+,AluSq,SINE,Alu,1,313,0,8239119,8239429 -4 + chr19 8374375 8374419 chr19,8374375,8374419,+,(TTCT)n,Simple_repeat,Simple_repeat,1,46,0,8374375,8374419 -5 + chr19 8374492 8374608 chr19,8374492,8374790,+,AluSz,SINE,Alu,1,295,-17,8374492,8374807 -2 + chr19 8376905 8377025 chr19,8375577,8377025,+,LTR12C,LTR,ERV1,3,1579,0,8375575,8377025 -4 + chr19 8377025 8377067 chr19,8377025,8377104,+,AluSx,SINE,Alu,242,312,0,8376784,8377104 -2 + chr19 8423720 8423739 chr19,8423720,8424015,+,AluJo,SINE,Alu,4,312,0,8423717,8424015 -2 + chr19 8427702 8427827 chr19,8427680,8427884,+,AluSz,SINE,Alu,2,186,-126,8427679,8428010 -1 + chr19 8444570 8444606 chr19,8444387,8444606,-,Charlie12,DNA,hAT-Charlie,-2573,300,59,8441814,8444664 +5 - chr19 8444845 8444908 chr19,8444845,8444908,+,G-rich,Low_complexity,Low_complexity,1,66,0,8444845,8444908 -6 + chr19 8445000 8445041 chr19,8445000,8445041,+,(GGC)n,Simple_repeat,Simple_repeat,1,41,0,8445000,8445041 -6 + chr19 8549506 8549582 chr19,8549503,8549804,-,AluSz,SINE,Alu,-3,309,1,8549500,8549804 -1 - chr19 8549920 8550098 chr19,8549809,8550098,-,AluJr,SINE,Alu,-21,291,2,8549788,8550099 -2 - chr19 8575079 8575374 chr19,8575067,8575374,-,AluSc,SINE,Alu,-3,306,1,8575064,8575374 +5 - chr19 8575374 8575608 chr19,8575374,8575608,-,MER1B,DNA,hAT-Charlie,-115,224,5,8575259,8575612 +6 - chr19 8575608 8575659 chr19,8575608,8575659,-,MIRb,SINE,MIR,-48,220,172,8575560,8575830 +6 - chr19 8576004 8576170 chr19,8576004,8576298,-,AluSz,SINE,Alu,-19,293,1,8575985,8576298 +1 - chr19 8581160 8581276 chr19,8581109,8581276,-,FLAM_A,SINE,Alu,0,142,1,8581109,8581276 -1 - chr19 8581277 8581367 chr19,8581277,8581367,+,MIR,SINE,MIR,112,204,-64,8581166,8581431 +6 + chr19 8582668 8582715 chr19,8582668,8582949,-,AluSx,SINE,Alu,-14,298,1,8582654,8582949 -5 - chr19 8632476 8632625 chr19,8632300,8632713,+,MER41A,LTR,ERV1,1,424,-130,8632300,8632843 +3 + chr19 8635650 8635746 chr19,8635339,8635783,-,L1ME1,LINE,L1,-119,6060,5634,8635220,8641416 -3 - chr19 8638497 8638649 chr19,8638497,8638832,-,L2a,LINE,L2,0,3426,3025,8638497,8641856 -5 - chr19 8823986 8824110 chr19,8823986,8824510,+,MLT1F,LTR,ERVL-MaLR,1,545,-3,8823986,8824513 +5 + chr19 8833473 8833497 chr19,8833473,8833497,+,(TGTG)n,Simple_repeat,Simple_repeat,1,24,0,8833473,8833497 +6 + chr19 8833507 8833541 chr19,8833507,8833706,-,L2a,LINE,L2,-4,3422,3235,8833503,8836940 -5 - chr19 9291517 9291657 chr19,9291517,9291657,+,L1ME3,LINE,L1,4952,5100,-1046,9286566,9292703 +6 + chr19 9291707 9291753 chr19,9291707,9292001,-,AluSx,SINE,Alu,-11,301,1,9291696,9292001 -4 - chr19 9294317 9294435 chr19,9294269,9294435,-,AluJr,SINE,Alu,-10,302,137,9294259,9294571 -2 - chr19 9344784 9344795 chr19,9344713,9344795,-,L1MC,LINE,L1,-759,5420,5328,9343954,9350122 -1 - chr19 9344852 9345638 chr19,9344852,9345638,-,L1ME1,LINE,L1,-19,6160,5308,9344833,9350945 -6 - chr19 9345641 9345721 chr19,9345641,9345721,-,AluJo,SINE,Alu,0,312,232,9345641,9345952 -6 - chr19 9509540 9510079 chr19,9508464,9510889,-,HERVK3-int,LTR,ERVK,-2,7200,4762,9508462,9515650 -5 - chr19 9523224 9523572 chr19,9523173,9523572,-,MLT1B,LTR,ERVL-MaLR,0,390,18,9523173,9523589 +5 - chr19 9523589 9523915 chr19,9523589,9523915,-,MER1B,DNA,hAT-Charlie,0,339,1,9523589,9523915 +6 - chr19 9524196 9524337 chr19,9524196,9524337,-,X6A_LINE,LINE,CR1,-74,1006,857,9524122,9525193 +6 - chr19 9524499 9524640 chr19,9524499,9524808,+,AluSp,SINE,Alu,1,310,-3,9524499,9524811 -1 + chr19 9539136 9539342 chr19,9539118,9539342,-,AluSz6,SINE,Alu,-16,296,73,9539102,9539414 -2 - chr19 9539342 9539734 chr19,9539342,9539771,+,LTR7C,LTR,ERV1,1,471,0,9539342,9539771 +5 + chr19 9621594 9621645 chr19,9621594,9621665,+,FLAM_C,SINE,Alu,1,71,-62,9621594,9621727 +4 + chr19 9626784 9626860 chr19,9626755,9627064,-,AluJb,SINE,Alu,-9,303,2,9626746,9627065 -3 - chr19 9627716 9627806 chr19,9627546,9627824,-,AluSg4,SINE,Alu,-28,282,5,9627518,9627828 -3 - chr19 9632228 9632651 chr19,9627909,9634410,+,HERVIP10B3-int,LTR,ERV1,1042,7603,0,9626868,9634410 +5 + chr19 9633460 9634410 chr19,9627909,9634410,+,HERVIP10B3-int,LTR,ERV1,1042,7603,0,9626868,9634410 +5 + chr19 9634475 9634809 chr19,9634475,9634809,+,LTR10B,LTR,ERV1,180,505,0,9634296,9634809 +5 + chr19 9634809 9634855 chr19,9634809,9634855,+,L1MC4a,LINE,L1,5846,5890,-1992,9628964,9636847 +6 + chr19 9643581 9643796 chr19,9643581,9643796,-,AluJo,SINE,Alu,-12,300,3,9643569,9643798 -6 - chr19 9643819 9644093 chr19,9643819,9644093,-,AluSc8,SINE,Alu,-8,303,2,9643811,9644094 -6 - chr19 9644308 9644439 chr19,9644308,9644439,+,AluJo,SINE,Alu,1,132,-180,9644308,9644619 +6 + chr19 9644497 9644881 chr19,9644497,9644881,-,THE1D,LTR,ERVL-MaLR,-37,344,1,9644460,9644881 -6 - chr19 9645050 9645344 chr19,9645050,9645344,-,AluSc,SINE,Alu,-14,295,1,9645036,9645344 -6 - chr19 9645444 9645516 chr19,9645444,9645516,-,MLT1H,LTR,ERVL-MaLR,0,549,478,9645444,9645993 -5 - chr19 9722049 9722354 chr19,9722049,9722354,+,LTR10A,LTR,ERV1,191,547,-62,9721859,9722416 +6 + chr19 9730853 9730899 chr19,9730428,9730899,-,LTR2,LTR,ERV1,0,463,1,9730428,9730899 -1 - chr19 9730899 9731099 chr19,9730899,9731099,-,L1MA8,LINE,L1,-269,6022,5819,9730630,9736917 -6 - chr19 9731191 9731376 chr19,9731191,9731499,+,AluSx,SINE,Alu,2,309,-3,9731190,9731502 +4 + chr19 9731868 9731943 chr19,9731733,9732046,-,AluSx3,SINE,Alu,-7,304,1,9731726,9732046 -5 - chr19 9793621 9793648 chr19,9793372,9793670,-,AluJo,SINE,Alu,-13,299,1,9793359,9793670 -1 - chr19 9802259 9802301 chr19,9802259,9802356,+,MER4D1,LTR,ERV1,460,541,-359,9801800,9802715 +5 + chr19 9834079 9834264 chr19,9834079,9834264,-,MIR,SINE,MIR,-49,213,16,9834030,9834279 +5 - chr19 9996691 9997157 chr19,9996691,9997157,+,GA-rich,Low_complexity,Low_complexity,1,481,0,9996691,9997157 +6 + chr19 10089032 10089199 chr19,10089004,10089199,-,MIR,SINE,MIR,-10,252,21,10088994,10089219 +5 - chr19 10089219 10089301 chr19,10089219,10089301,-,MIRb,SINE,MIR,-90,118,34,10089129,10089334 +6 - chr19 10089405 10089543 chr19,10089405,10089543,+,MIRb,SINE,MIR,97,242,-26,10089309,10089569 -6 + chr19 10090315 10090377 chr19,10090315,10090445,+,AluJb,SINE,Alu,1,126,-186,10090315,10090631 -1 + chr19 10221788 10221835 chr19,10221788,10221835,+,(CA)n,Simple_repeat,Simple_repeat,1,47,0,10221788,10221835 -6 + chr19 10221972 10222271 chr19,10221972,10222271,+,AluSx1,SINE,Alu,1,298,-14,10221972,10222285 -6 + chr19 10222879 10223194 chr19,10222879,10223198,+,AluSx1,SINE,Alu,2,312,0,10222878,10223198 -1 + chr19 10252780 10252827 chr19,10252780,10252890,+,MIRb,SINE,MIR,91,197,-71,10252690,10252961 -2 + chr19 10259109 10259125 chr19,10258853,10259125,+,AluJb,SINE,Alu,1,309,-3,10258853,10259128 -5 + chr19 10259149 10259241 chr19,10259149,10259345,+,L2,LINE,L2,2766,2965,-454,10256384,10259799 -2 + chr19 10285801 10285880 chr19,10285795,10285880,-,L2c,LINE,L2,0,3387,3284,10285795,10289163 +5 - chr19 10285891 10285961 chr19,10285891,10285961,+,MER91A,DNA,hAT-Tip100,1,70,-126,10285891,10286087 -6 + chr19 10286357 10286379 chr19,10286357,10286379,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,10286357,10286379 -6 + chr19 10286379 10286579 chr19,10286379,10286579,-,AluJr,SINE,Alu,-31,281,87,10286348,10286665 +6 - chr19 10288165 10288474 chr19,10288165,10288474,+,AluJb,SINE,Alu,1,309,-3,10288165,10288477 -6 + chr19 10288576 10288603 chr19,10288576,10288603,+,(TTG)n,Simple_repeat,Simple_repeat,1,27,0,10288576,10288603 -6 + chr19 10490339 10490396 chr19,10490336,10490614,-,AluSq2,SINE,Alu,-9,304,1,10490327,10490614 +5 - chr19 10490744 10490847 chr19,10490744,10490847,-,MIRc,SINE,MIR,-107,161,65,10490637,10490911 +6 - chr19 10490936 10491000 chr19,10490936,10491199,+,AluSx1,SINE,Alu,1,273,-39,10490936,10491238 -1 + chr19 10651862 10652327 chr19,10651832,10652327,-,LTR61,LTR,ERV1,0,559,49,10651832,10652375 +5 - chr19 10652345 10652538 chr19,10652345,10652538,-,AluSz6,SINE,Alu,-3,309,134,10652342,10652671 +6 - chr19 10652538 10652841 chr19,10652538,10652841,-,AluSx1,SINE,Alu,-9,303,1,10652529,10652841 +6 - chr19 10652869 10653166 chr19,10652869,10653166,-,AluSx3,SINE,Alu,-16,295,1,10652853,10653166 +6 - chr19 10653425 10653568 chr19,10653425,10653568,+,MIR3,SINE,MIR,50,185,-23,10653376,10653591 -6 + chr19 11011215 11011254 chr19,11011215,11011524,-,AluSx,SINE,Alu,-1,311,1,11011214,11011524 +2 - chr19 11015984 11016011 chr19,11015725,11016024,+,AluSq2,SINE,Alu,2,296,-17,11015724,11016041 -1 + chr19 11205810 11205924 chr19,11205645,11205924,-,AluJo,SINE,Alu,-15,297,1,11205630,11205924 -2 - chr19 11206039 11206108 chr19,11206039,11206273,+,L1MC5a,LINE,L1,2147,2349,-428,11203893,11206701 +4 + chr19 11208268 11208578 chr19,11208268,11208578,-,AluSg,SINE,Alu,0,310,1,11208268,11208578 -6 - chr19 11216137 11216168 chr19,11216090,11216387,-,AluJb,SINE,Alu,-15,297,1,11216075,11216387 -5 - chr19 11221083 11221123 chr19,11220822,11221123,-,AluY,SINE,Alu,-10,301,1,11220812,11221123 -1 - chr19 11221123 11221410 chr19,11221123,11221410,+,L1MEg,LINE,L1,831,1122,-4962,11220293,11226372 +6 + chr19 11221559 11221573 chr19,11221559,11221701,-,MIR,SINE,MIR,0,262,97,11221559,11221797 -5 - chr19 11300777 11300789 chr19,11300542,11300789,+,L1ME4b,LINE,L1,625,884,-8,11299918,11300797 -5 + chr19 11306811 11306824 chr19,11306811,11307107,-,AluSq2,SINE,Alu,-9,304,1,11306802,11307107 +2 - chr19 11321294 11321323 chr19,11321200,11321519,-,THE1D,LTR,ERVL-MaLR,-62,319,1,11321138,11321519 +1 - chr19 11322341 11322371 chr19,11322341,11322371,+,GA-rich,Low_complexity,Low_complexity,1,30,0,11322341,11322371 +6 + chr19 11322910 11322982 chr19,11322910,11323132,+,AluSx1,SINE,Alu,80,304,-8,11322831,11323140 +4 + chr19 11324183 11324195 chr19,11324183,11324277,+,AluJo,SINE,Alu,211,306,-6,11323973,11324283 +5 + chr19 11368123 11368295 chr19,11368017,11368316,+,AluJr,SINE,Alu,18,302,-10,11368000,11368326 -5 + chr19 11371756 11371871 chr19,11371756,11372079,+,AluSx,SINE,Alu,1,311,-1,11371756,11372080 -2 + chr19 11644239 11644361 chr19,11644205,11644518,-,AluSp,SINE,Alu,0,313,1,11644205,11644518 -3 - chr19 11680392 11680791 chr19,11680370,11680791,-,MSTA,LTR,ERVL-MaLR,0,428,2,11680370,11680792 -2 - chr19 11680795 11680972 chr19,11680795,11681147,-,L1PA14,LINE,L1,-3821,2852,2495,11676974,11683641 -4 - chr19 11686222 11686469 chr19,11686222,11686469,-,MER2,DNA,TcMar-Tigger,-1,344,78,11686221,11686546 -6 - chr19 11725961 11726117 chr19,11725945,11726276,+,AluJb,SINE,Alu,1,312,0,11725945,11726276 -5 + chr19 11730450 11730579 chr19,11730311,11730579,+,AluJo,SINE,Alu,12,287,-25,11730300,11730604 -4 + chr19 11796084 11797226 chr19,11796039,11797226,-,L1M2,LINE,L1,-2588,3555,2326,11793451,11799551 +5 - chr19 11797226 11797476 chr19,11797226,11797476,-,AluJr,SINE,Alu,-57,255,1,11797169,11797476 +6 - chr19 11797476 11797528 chr19,11797476,11797528,-,L1M2,LINE,L1,-3818,2325,2272,11793658,11799799 +6 - chr19 11841241 11841326 chr19,11841044,11841326,+,AluSx1,SINE,Alu,1,282,-30,11841044,11841356 -5 + chr19 11841332 11841360 chr19,11841332,11841360,+,(AAAT)n,Simple_repeat,Simple_repeat,1,28,0,11841332,11841360 -6 + chr19 11841408 11841435 chr19,11841408,11841696,+,AluSz,SINE,Alu,3,296,-16,11841406,11841712 -2 + chr19 11842193 11842243 chr19,11841930,11842243,-,AluSz,SINE,Alu,-3,309,1,11841927,11842243 +4 - chr19 11856032 11858177 chr19,11854768,11858177,-,HERVK3-int,LTR,ERVK,-805,6397,2986,11853963,11861162 -1 - chr19 11858177 11858302 chr19,11858177,11858483,+,AluY,SINE,Alu,2,299,-12,11858176,11858495 +5 + chr19 11939959 11940026 chr19,11939947,11940229,-,AluSp,SINE,Alu,-11,302,1,11939936,11940229 -1 - chr19 11952982 11953099 chr19,11952791,11953099,+,AluSz,SINE,Alu,1,304,-8,11952791,11953107 +2 + chr19 11990169 11990217 chr19,11989960,11990217,-,LTR13,LTR,ERVK,-748,259,2,11989212,11990218 -2 - chr19 11990217 11990336 chr19,11990217,11990336,+,AluSx,SINE,Alu,106,227,-85,11990112,11990421 +6 + chr19 11990337 11990381 chr19,11990337,11990588,-,MER4D,LTR,ERV1,-58,845,591,11990279,11991178 -4 - chr19 12003392 12003657 chr19,12003391,12003657,+,AluSz,SINE,Alu,1,247,-65,12003391,12003722 +5 + chr19 12023195 12024463 chr19,12023069,12024463,+,HERVK9-int,LTR,ERVK,1436,2850,-3171,12021634,12027634 +1 + chr19 12024461 12027194 chr19,12024461,12027348,+,HERVK9-int,LTR,ERVK,3104,6021,0,12021358,12027348 +5 + chr19 12034576 12034592 chr19,12034436,12034600,+,MER4D,LTR,ERV1,119,282,-641,12034318,12035241 +1 + chr19 12035849 12035914 chr19,12035849,12036162,-,MER1B,DNA,hAT-Charlie,0,339,1,12035849,12036162 -5 - chr19 12046082 12046201 chr19,12046058,12046201,-,AluJr,SINE,Alu,-3,309,166,12046055,12046366 -2 - chr19 12202320 12202334 chr19,12202069,12202334,+,LTR53-int,LTR,ERVL,55,337,-3219,12202015,12205553 +2 + chr19 12202449 12202551 chr19,12202449,12202848,+,LTR53-int,LTR,ERVL,299,638,-2918,12202151,12205766 +4 + chr19 12237090 12237120 chr19,12236901,12237120,+,MER57E3,LTR,ERV1,194,486,-1,12236708,12237121 +2 + chr19 12345949 12346158 chr19,12345908,12346158,+,L1MB4,LINE,L1,5276,5519,-857,12340633,12347015 -5 + chr19 12346227 12346958 chr19,12346227,12346958,+,L1MB4,LINE,L1,5509,6248,-168,12340719,12347126 -6 + chr19 12347175 12347331 chr19,12347175,12347331,+,L2-3_Crp,LINE,L2,773,925,-1171,12346403,12348502 -6 + chr19 12347372 12347531 chr19,12347372,12347531,+,Tigger7,DNA,TcMar-Tigger,1531,1688,-803,12345842,12348334 -6 + chr19 12347726 12347860 chr19,12347726,12347860,+,LTR19A,LTR,ERV1,342,476,-10,12347385,12347870 -6 + chr19 12450935 12451187 chr19,12450588,12451187,+,LTR14B,LTR,ERVK,17,608,0,12450572,12451187 +1 + chr19 12451187 12451302 chr19,12451187,12452383,+,HERVK14-int,LTR,ERVK,1,1199,-4897,12451187,12457280 +4 + chr19 12460559 12460594 chr19,12460467,12460594,+,MER90a,LTR,ERV1,486,612,-2,12459982,12460596 +2 + chr19 12529768 12530013 chr19,12529700,12530013,+,AluSq2,SINE,Alu,1,312,-1,12529700,12530014 -5 + chr19 12532910 12532973 chr19,12532736,12533444,+,L1MC2,LINE,L1,2550,3241,-3080,12530187,12536524 -1 + chr19 12553625 12553644 chr19,12553625,12553862,+,MER21A,LTR,ERVL,1,293,-638,12553625,12554500 +5 + chr19 12682693 12682990 chr19,12682683,12682990,-,AluSq,SINE,Alu,-1,312,1,12682682,12682990 +5 - chr19 12683085 12683106 chr19,12683085,12683106,+,(GTT)n,Simple_repeat,Simple_repeat,1,22,0,12683085,12683106 -6 + chr19 12683106 12683228 chr19,12683106,12683407,-,AluY,SINE,Alu,-10,301,1,12683096,12683407 +2 - chr19 12687181 12687279 chr19,12686974,12687280,+,AluSq2,SINE,Alu,1,305,-8,12686974,12687288 -1 + chr19 12689174 12689238 chr19,12689174,12689256,+,(CCAGCCT)n,Simple_repeat,Simple_repeat,1,84,0,12689174,12689256 +5 + chr19 12725517 12725544 chr19,12725421,12725733,-,AluSp,SINE,Alu,0,313,1,12725421,12725733 +5 - chr19 12725818 12725886 chr19,12725797,12726100,+,AluSc8,SINE,Alu,3,305,-6,12725795,12726106 -1 + chr19 12825711 12825744 chr19,12825711,12825744,+,(GCCGCT)n,Simple_repeat,Simple_repeat,1,33,0,12825711,12825744 +1 + chr19 12883823 12884088 chr19,12883724,12884154,+,LTR8A,LTR,ERV1,284,727,0,12883441,12884154 +5 + chr19 12933156 12933296 chr19,12933156,12933369,+,L2b,LINE,L2,3122,3369,-6,12930035,12933375 +5 + chr19 13014369 13014392 chr19,13014369,13014392,+,(AAGA)n,Simple_repeat,Simple_repeat,1,23,0,13014369,13014392 -6 + chr19 13082234 13082450 chr19,13082234,13082450,-,MER20,DNA,hAT-Charlie,0,219,1,13082234,13082450 -6 - chr19 13131753 13131806 chr19,13131753,13131806,+,MIRb,SINE,MIR,31,82,-186,13131723,13131992 +6 + chr19 13131823 13131855 chr19,13131823,13131855,+,MIRb,SINE,MIR,15,43,-225,13131809,13132080 +6 + chr19 13131855 13131895 chr19,13131855,13132134,-,AluSx1,SINE,Alu,-8,304,38,13131847,13132171 -4 - chr19 13132345 13132410 chr19,13132134,13132430,+,AluSz,SINE,Alu,1,304,-8,13132134,13132438 +5 + chr19 13139643 13139704 chr19,13139643,13139704,+,G-rich,Low_complexity,Low_complexity,1,63,0,13139643,13139704 -6 + chr19 13772414 13772458 chr19,13772414,13772546,+,MIR,SINE,MIR,21,151,-111,13772394,13772657 -5 + chr19 13772473 13772546 chr19,13772414,13772546,+,MIR,SINE,MIR,21,151,-111,13772394,13772657 -5 + chr19 13772546 13772633 chr19,13772546,13772836,+,AluY,SINE,Alu,1,290,-21,13772546,13772857 -2 + chr19 13773257 13773307 chr19,13773003,13773307,-,AluSz,SINE,Alu,-9,303,1,13772994,13773307 +4 - chr19 13773307 13773357 chr19,13773307,13773357,+,MER96B,DNA,hAT-Tip100,108,145,-272,13773200,13773629 -6 + chr19 13773357 13773633 chr19,13773357,13773646,+,AluJr,SINE,Alu,1,297,-15,13773357,13773661 -1 + chr19 13773817 13773950 chr19,13773668,13773950,-,AluSx1,SINE,Alu,-23,289,1,13773645,13773950 +4 - chr19 13773950 13774118 chr19,13773950,13774197,+,MER96B,DNA,hAT-Tip100,155,408,-9,13773796,13774206 -1 + chr19 13834729 13834886 chr19,13834729,13834886,+,AluJr,SINE,Alu,2,136,-176,13834728,13835062 -6 + chr19 13834886 13835207 chr19,13834886,13835207,+,AluSx1,SINE,Alu,2,299,-13,13834885,13835220 -6 + chr19 13835207 13835342 chr19,13835207,13835342,+,AluJr,SINE,Alu,137,301,-11,13835071,13835353 -6 + chr19 13835344 13835653 chr19,13835344,13835653,+,AluSx,SINE,Alu,1,309,-3,13835344,13835656 -6 + chr19 14155750 14155801 chr19,14155750,14156041,-,MER113A,DNA,hAT-Charlie,-12,302,1,14155738,14156041 -5 - chr19 14168899 14168948 chr19,14168899,14168948,-,MIR1_Amn,SINE,MIR,-80,150,102,14168819,14169049 -6 - chr19 14169112 14169204 chr19,14169112,14169204,-,L2a,LINE,L2,-16,3410,3306,14169096,14172509 -6 - chr19 14169227 14169288 chr19,14169227,14169288,-,MIRb,SINE,MIR,-22,246,180,14169205,14169467 -6 - chr19 14169302 14169430 chr19,14169302,14169430,-,MIR3,SINE,MIR,-142,126,3,14169160,14169432 -6 - chr19 14169638 14169673 chr19,14169638,14169673,+,G-rich,Low_complexity,Low_complexity,1,36,0,14169638,14169673 +6 + chr19 14169792 14169845 chr19,14169792,14169845,+,G-rich,Low_complexity,Low_complexity,1,54,0,14169792,14169845 +6 + chr19 14170922 14171267 chr19,14170922,14171315,+,MSTA,LTR,ERVL-MaLR,1,428,0,14170922,14171315 +5 + chr19 14267807 14267876 chr19,14267784,14267876,-,MIR,SINE,MIR,-20,242,151,14267764,14268026 +5 - chr19 14269321 14269377 chr19,14269180,14269518,+,MLT1I,LTR,ERVL-MaLR,59,411,0,14269122,14269518 -1 + chr19 14279804 14279886 chr19,14279776,14279886,-,MIR,SINE,MIR,-3,259,148,14279773,14280033 +4 - chr19 14291627 14291716 chr19,14291419,14291762,+,L2a,LINE,L2,3031,3426,0,14288389,14291762 -3 + chr19 14292754 14292874 chr19,14292748,14292874,-,MER91A,DNA,hAT-Tip100,-47,149,1,14292701,14292874 +4 - chr19 14305458 14305544 chr19,14305238,14305544,-,AluSq2,SINE,Alu,0,313,1,14305238,14305544 +5 - chr19 14320332 14320351 chr19,14320332,14320442,-,MER63B,DNA,hAT-Blackjack,0,436,308,14320332,14320749 +2 - chr19 14325308 14325431 chr19,14325263,14325624,-,MLT1B,LTR,ERVL-MaLR,-32,358,3,14325231,14325626 +5 - chr19 14333919 14334019 chr19,14333919,14334074,+,FLAM_C,SINE,Alu,2,143,0,14333918,14334074 +4 + chr19 14343620 14343705 chr19,14343620,14343705,+,AluSz,SINE,Alu,1,83,-229,14343620,14343934 +6 + chr19 14343705 14343916 chr19,14343705,14344066,+,LTR7B,LTR,ERV1,1,293,-171,14343705,14344237 +5 + chr19 14347315 14347409 chr19,14347292,14347424,+,AluJb,SINE,Alu,1,130,-182,14347292,14347606 -3 + chr19 14366867 14366909 chr19,14366641,14366909,-,MLT1I,LTR,ERVL-MaLR,-42,369,17,14366599,14366925 +4 - chr19 14370118 14370196 chr19,14370118,14370219,-,MER113,DNA,hAT-Charlie,-115,406,314,14370003,14370532 +1 - chr19 14458722 14458928 chr19,14458722,14459025,+,AluSx,SINE,Alu,1,298,-14,14458722,14459039 +4 + chr19 14459006 14459025 chr19,14458722,14459025,+,AluSx,SINE,Alu,1,298,-14,14458722,14459039 +2 + chr19 14459234 14459366 chr19,14459234,14459547,+,AluSx1,SINE,Alu,1,312,0,14459234,14459547 +5 + chr19 15124464 15124505 chr19,15124407,15124552,+,MIRb,SINE,MIR,91,226,-42,15124317,15124594 +3 + chr19 15126144 15126174 chr19,15126144,15126206,+,(TA)n,Simple_repeat,Simple_repeat,1,64,0,15126144,15126206 +5 + chr19 15221140 15221238 chr19,15221140,15221459,-,AluSx1,SINE,Alu,0,312,1,15221140,15221459 +2 - chr19 15222245 15222297 chr19,15222171,15222461,-,AluSc8,SINE,Alu,-21,290,1,15222150,15222461 +1 - chr19 15346068 15346270 chr19,15345969,15346270,+,AluJo,SINE,Alu,1,311,-1,15345969,15346271 -5 + chr19 15346312 15346373 chr19,15346312,15346373,+,L1M4,LINE,L1,4187,4247,-1899,15342126,15348272 -6 + chr19 15346373 15346404 chr19,15346373,15346404,+,(AC)n,Simple_repeat,Simple_repeat,1,31,0,15346373,15346404 -6 + chr19 15346404 15346522 chr19,15346404,15346525,+,L1M4,LINE,L1,4248,4381,-1765,15342157,15348290 -2 + chr19 15347104 15347154 chr19,15346861,15347154,-,AluY,SINE,Alu,-20,291,1,15346841,15347154 +4 - chr19 15347154 15347184 chr19,15347154,15347184,+,L1M4,LINE,L1,4411,4444,-1702,15342744,15348886 -6 + chr19 15347184 15347480 chr19,15347184,15347480,+,AluSz,SINE,Alu,1,297,-15,15347184,15347495 -6 + chr19 15347485 15347772 chr19,15347485,15347772,+,AluSg7,SINE,Alu,11,289,-20,15347475,15347792 -6 + chr19 15347782 15348070 chr19,15347782,15348070,+,AluSc,SINE,Alu,3,302,-7,15347780,15348077 -6 + chr19 15348070 15348138 chr19,15348070,15348138,+,L1M4,LINE,L1,4459,4549,-1597,15343612,15349735 -6 + chr19 15348138 15348417 chr19,15348138,15348436,+,AluSc,SINE,Alu,3,298,-11,15348136,15348447 -1 + chr19 15379967 15380023 chr19,15379967,15380023,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,56,0,15379967,15380023 +6 + chr19 15380239 15380308 chr19,15380239,15380308,+,(GGC)n,Simple_repeat,Simple_repeat,1,70,0,15380239,15380308 +6 + chr19 15380372 15380403 chr19,15380372,15380403,+,(CCT)n,Simple_repeat,Simple_repeat,1,31,0,15380372,15380403 +6 + chr19 15380694 15380734 chr19,15380694,15380734,+,(CCGCACC)n,Simple_repeat,Simple_repeat,1,43,0,15380694,15380734 +6 + chr19 15381055 15381194 chr19,15381028,15381391,+,L1ME4c,LINE,L1,5436,5821,-303,15375593,15381694 +5 + chr19 15383202 15383493 chr19,15383201,15383493,-,AluJo,SINE,Alu,-5,307,1,15383196,15383493 +5 - chr19 15383493 15383559 chr19,15383493,15383559,+,MER46C,DNA,TcMar-Tigger,247,322,-16,15383247,15383575 -6 + chr19 15383606 15383832 chr19,15383606,15383923,-,L1M1,LINE,L1,-1312,4834,4491,15382294,15388413 +1 - chr19 15614163 15614444 chr19,15614158,15614444,+,AluSx3,SINE,Alu,29,300,-11,15614130,15614455 -4 + chr19 15770797 15770810 chr19,15770188,15770810,+,LTR40A1,LTR,ERVL,6,584,0,15770183,15770810 +2 + chr19 15828961 15829200 chr19,15828737,15829200,+,LTR7C,LTR,ERV1,1,471,0,15828737,15829200 +1 + chr19 15829201 15829338 chr19,15829201,15829645,+,HERVH-int,LTR,ERV1,2,446,-7267,15829200,15836912 +4 + chr19 15831255 15831356 chr19,15829641,15834725,+,HERVH-int,LTR,ERV1,791,5453,-2260,15828851,15836985 +3 + chr19 15834502 15834725 chr19,15829641,15834725,+,HERVH-int,LTR,ERV1,791,5453,-2260,15828851,15836985 +2 + chr19 15835690 15836170 chr19,15835690,15836170,+,LTR7C,LTR,ERV1,1,471,0,15835690,15836170 +5 + chr19 15835690 15835853 chr19,15835690,15836170,+,LTR7C,LTR,ERV1,1,471,0,15835690,15836170 -5 + chr19 15904556 15904594 chr19,15904544,15904594,+,MLT2A2,LTR,ERVL,512,561,0,15904033,15904594 +1 + chr19 15904594 15907234 chr19,15904594,15907671,-,L1M2,LINE,L1,-1147,6370,3297,15903447,15910967 -5 - chr19 16015346 16015359 chr19,16015346,16015429,-,HSAT5,Satellite,Satellite,-9,83,1,16015337,16015429 -4 - chr19 16027178 16027206 chr19,16027178,16027206,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,16027178,16027206 +6 + chr19 16031630 16031727 chr19,16031484,16031727,-,HSAT5,Satellite,Satellite,-1,237,1,16031483,16031727 -1 - chr19 16031751 16031870 chr19,16031751,16031948,-,HSAT5,Satellite,Satellite,-1,199,1,16031750,16031948 -4 - chr19 16033317 16033353 chr19,16032803,16033968,-,HSAT5,Satellite,Satellite,-1,1136,1,16032802,16033968 -1 - chr19 16033654 16033828 chr19,16032803,16033968,-,HSAT5,Satellite,Satellite,-1,1136,1,16032802,16033968 -1 - chr19 16034120 16034206 chr19,16034118,16034213,-,HSAT5,Satellite,Satellite,-6,94,1,16034112,16034213 -1 - chr19 16034530 16034555 chr19,16034530,16034555,+,(AGGA)n,Simple_repeat,Simple_repeat,1,25,0,16034530,16034555 +6 + chr19 16041439 16041609 chr19,16041329,16041609,+,L1MDa,LINE,L1,118,381,-6252,16041212,16047861 +2 + chr19 16041788 16042116 chr19,16041788,16042126,+,ORSL-2b,DNA,hAT-Tip100,34,377,-131,16041755,16042257 +5 + chr19 16065956 16066032 chr19,16065956,16066032,-,L2c,LINE,L2,-224,3163,3088,16065732,16069119 -6 - chr19 16066105 16066180 chr19,16066072,16066180,-,L2c,LINE,L2,-5,3382,3274,16066067,16069453 -2 - chr19 16074293 16074614 chr19,16074245,16074614,-,MLT1A,LTR,ERVL-MaLR,0,374,5,16074245,16074618 +5 - chr19 16074616 16074696 chr19,16074616,16074696,+,MIRc,SINE,MIR,31,125,-143,16074586,16074839 -6 + chr19 16074810 16075097 chr19,16074810,16075097,+,AluSz,SINE,Alu,2,292,-20,16074809,16075117 -6 + chr19 16075326 16075536 chr19,16075326,16075536,+,Charlie16a,DNA,hAT-Charlie,113,342,0,16075214,16075536 -6 + chr19 16075545 16075657 chr19,16075545,16075657,-,L2,LINE,L2,-556,2863,2743,16074989,16078399 +6 - chr19 16075891 16075946 chr19,16075891,16075946,-,MIR,SINE,MIR,-99,163,109,16075792,16076054 +6 - chr19 16076232 16076281 chr19,16076232,16076281,+,GA-rich,Low_complexity,Low_complexity,1,51,0,16076232,16076281 -6 + chr19 16076659 16076705 chr19,16076659,16076705,+,(AGCGCG)n,Simple_repeat,Simple_repeat,1,47,0,16076659,16076705 -6 + chr19 16103761 16103855 chr19,16103661,16103855,+,AluJo,SINE,Alu,136,307,-5,16103526,16103860 -5 + chr19 16103951 16103973 chr19,16103951,16104095,+,AluSz,SINE,Alu,1,144,-168,16103951,16104263 -2 + chr19 16104101 16104254 chr19,16104095,16104380,+,AluSz,SINE,Alu,18,310,-2,16104078,16104382 -1 + chr19 16123661 16123730 chr19,16123616,16123730,-,MER3,DNA,hAT-Charlie,-45,164,50,16123571,16123779 +5 - chr19 16124745 16124788 chr19,16124745,16124788,+,MIR1_Amn,SINE,MIR,111,153,-77,16124635,16124865 -6 + chr19 16125607 16125730 chr19,16125607,16125730,-,MIR,SINE,MIR,-123,139,21,16125484,16125750 +6 - chr19 16133436 16133473 chr19,16133436,16133473,+,(T)n,Simple_repeat,Simple_repeat,1,37,0,16133436,16133473 -6 + chr19 16186340 16186567 chr19,16186340,16186567,-,AluSx1,SINE,Alu,-85,227,1,16186255,16186567 +6 - chr19 16189322 16189458 chr19,16189318,16189582,-,MLT1H2,LTR,ERVL-MaLR,-208,281,18,16189110,16189599 +1 - chr19 16283359 16283388 chr19,16283095,16283388,+,L1MB5,LINE,L1,5860,6174,0,16277236,16283388 -5 + chr19 16292831 16292931 chr19,16292648,16292931,-,AluSx1,SINE,Alu,-29,283,1,16292619,16292931 +4 - chr19 16352462 16352764 chr19,16352461,16352764,-,AluSx1,SINE,Alu,-11,301,1,16352450,16352764 +5 - chr19 16352764 16353069 chr19,16352764,16353069,-,AluSc,SINE,Alu,0,309,1,16352764,16353069 +6 - chr19 16353160 16353182 chr19,16353160,16353412,+,AluSq2,SINE,Alu,63,313,0,16353098,16353412 -1 + chr19 16356329 16356608 chr19,16356300,16356608,-,AluSg,SINE,Alu,0,310,2,16356300,16356609 +5 - chr19 16440999 16441170 chr19,16440999,16441170,-,MIRb,SINE,MIR,-93,175,5,16440906,16441174 -6 - chr19 16441188 16441239 chr19,16441188,16441479,+,AluY,SINE,Alu,1,291,-20,16441188,16441499 +4 + chr19 16443478 16443584 chr19,16443426,16443735,+,AluSq2,SINE,Alu,1,308,-5,16443426,16443740 +5 + chr19 16543266 16543430 chr19,16543266,16543430,-,AluJr,SINE,Alu,-10,302,137,16543256,16543566 -6 - chr19 16543553 16543638 chr19,16543553,16543638,-,MER58D,DNA,hAT-Charlie,-1,385,303,16543552,16543940 -6 - chr19 16543676 16543693 chr19,16543676,16543693,-,MER58D,DNA,hAT-Charlie,-69,317,305,16543607,16543997 -6 - chr19 16543693 16544000 chr19,16543693,16544000,-,AluSx,SINE,Alu,-7,305,1,16543686,16544000 -6 - chr19 16544000 16544096 chr19,16544000,16544096,-,MER58D,DNA,hAT-Charlie,-82,304,192,16543918,16544287 -6 - chr19 16544096 16544355 chr19,16544096,16544355,+,MSTC,LTR,ERVL-MaLR,1,211,-217,16544096,16544572 +6 + chr19 16544355 16544669 chr19,16544355,16544669,+,AluSx1,SINE,Alu,1,302,-10,16544355,16544679 +6 + chr19 16544669 16544814 chr19,16544669,16544861,+,MSTC,LTR,ERVL-MaLR,212,426,-2,16544458,16544863 +5 + chr19 16551773 16551897 chr19,16551748,16552043,-,AluSz,SINE,Alu,-6,306,1,16551742,16552043 -1 - chr19 16552022 16552043 chr19,16551748,16552043,-,AluSz,SINE,Alu,-6,306,1,16551742,16552043 -1 - chr19 16565551 16565573 chr19,16565517,16565814,-,AluSx4,SINE,Alu,-12,298,2,16565505,16565815 -1 - chr19 16566164 16566200 chr19,16565871,16566200,+,AluJr,SINE,Alu,1,306,-6,16565871,16566206 +2 + chr19 16572989 16573095 chr19,16572989,16573095,-,MIRb,SINE,MIR,-65,203,86,16572924,16573180 -6 - chr19 16573383 16573680 chr19,16573383,16573680,+,AluJo,SINE,Alu,1,297,-15,16573383,16573695 +6 + chr19 16573998 16574175 chr19,16573998,16574175,-,MIRb,SINE,MIR,-31,237,35,16573967,16574209 -6 - chr19 16574921 16574941 chr19,16574921,16574941,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,16574921,16574941 +6 + chr19 16575243 16575281 chr19,16575243,16575281,+,GA-rich,Low_complexity,Low_complexity,1,43,0,16575243,16575281 +6 + chr19 16589290 16589409 chr19,16589290,16589754,+,L1ME3,LINE,L1,5607,6145,-17,16583684,16589771 +5 + chr19 16610374 16610390 chr19,16610294,16610390,+,Charlie17b,DNA,hAT-Charlie,956,1053,-151,16609339,16610541 -5 + chr19 16610411 16610437 chr19,16610390,16610687,-,AluSp,SINE,Alu,-11,302,11,16610379,16610697 -1 - chr19 16610390 16610687 chr19,16610390,16610687,-,AluSp,SINE,Alu,-11,302,11,16610379,16610697 +1 - chr19 16610687 16610816 chr19,16610687,16610816,+,Charlie17b,DNA,hAT-Charlie,1054,1204,0,16609634,16610816 -6 + chr19 16610918 16611089 chr19,16610918,16611089,-,L2,LINE,L2,-448,2971,2800,16610470,16613888 +6 - chr19 16611841 16611959 chr19,16611841,16611959,-,AluJr,SINE,Alu,-194,118,1,16611647,16611959 +6 - chr19 16611964 16612048 chr19,16611964,16612048,-,L1ME4c,LINE,L1,-431,399,309,16611533,16612356 +6 - chr19 16631102 16631153 chr19,16631102,16631418,+,AluSx1,SINE,Alu,1,312,0,16631102,16631418 +4 + chr19 16633797 16633971 chr19,16633748,16633971,+,L1ME4a,LINE,L1,5850,6076,-48,16627899,16634019 -5 + chr19 16634220 16634266 chr19,16634220,16634266,-,L2b,LINE,L2,-17,3358,3313,16634203,16637578 +6 - chr19 16634329 16634430 chr19,16634329,16634430,+,MLT1H,LTR,ERVL-MaLR,110,210,-339,16634220,16634769 -6 + chr19 16634433 16634494 chr19,16634433,16634494,+,L1M4,LINE,L1,5609,5650,-534,16628825,16635028 -6 + chr19 16634494 16634803 chr19,16634494,16634803,+,AluSx1,SINE,Alu,1,308,-4,16634494,16634807 -6 + chr19 16634803 16634900 chr19,16634803,16634900,+,L1M4,LINE,L1,5651,5741,-443,16629153,16635343 -6 + chr19 16635079 16635269 chr19,16635079,16635380,+,AluSz6,SINE,Alu,1,300,-12,16635079,16635392 -1 + chr19 16636183 16636377 chr19,16635945,16636377,+,MLT1D,LTR,ERVL-MaLR,1,446,-59,16635945,16636436 +2 + chr19 16636380 16636531 chr19,16636380,16636584,-,AluSx3,SINE,Alu,-19,292,85,16636361,16636668 -5 - chr19 16639967 16640166 chr19,16639946,16640240,-,AluSp,SINE,Alu,-10,303,2,16639936,16640241 +5 - chr19 16640323 16640336 chr19,16640240,16640336,-,AluSq,SINE,Alu,-177,136,45,16640063,16640380 +4 - chr19 16640650 16640668 chr19,16640650,16640950,+,AluSx1,SINE,Alu,1,310,-2,16640650,16640952 -1 + chr19 16801426 16801455 chr19,16801289,16801455,+,AluJb,SINE,Alu,134,299,-13,16801156,16801468 +1 + chr19 16801529 16801714 chr19,16801455,16801742,+,AluJb,SINE,Alu,2,309,-3,16801454,16801745 +5 + chr19 16844025 16844142 chr19,16843843,16844142,-,AluJb,SINE,Alu,-5,307,2,16843838,16844143 -1 - chr19 17009420 17009478 chr19,17009420,17009478,+,MLT1C,LTR,ERVL-MaLR,1,59,-408,17009420,17009886 +6 + chr19 17013371 17013460 chr19,17013227,17013512,+,AluSx1,SINE,Alu,2,284,-28,17013226,17013540 +5 + chr19 17051994 17052158 chr19,17051858,17052158,+,AluSq2,SINE,Alu,1,312,-1,17051858,17052159 +1 + chr19 17052158 17052230 chr19,17052158,17052267,-,AluJb,SINE,Alu,-203,109,1,17051955,17052267 -4 - chr19 17055045 17055087 chr19,17054993,17055143,+,AluJo,SINE,Alu,1,134,-178,17054993,17055321 +5 + chr19 17095418 17095749 chr19,17095246,17095749,-,L1MB5,LINE,L1,-61,6113,5603,17095185,17101351 +5 - chr19 17095749 17095766 chr19,17095749,17095766,-,L1ME1,LINE,L1,-280,5899,5893,17095469,17101658 +6 - chr19 17095766 17095882 chr19,17095766,17096065,-,AluY,SINE,Alu,-16,295,7,17095750,17096071 +2 - chr19 17099163 17099288 chr19,17098994,17099288,+,AluSc,SINE,Alu,1,295,-14,17098994,17099302 -4 + chr19 17157295 17157390 chr19,17157274,17157586,+,AluSz6,SINE,Alu,1,310,-2,17157274,17157588 -3 + chr19 17157620 17157712 chr19,17157597,17157899,+,AluJo,SINE,Alu,1,297,-15,17157597,17157914 -3 + chr19 17177511 17177568 chr19,17177358,17177642,-,AluJr,SINE,Alu,-6,306,1,17177352,17177642 +5 - chr19 17178410 17178452 chr19,17178321,17178452,+,AluJr,SINE,Alu,2,131,-181,17178320,17178633 -4 + chr19 17207350 17207371 chr19,17207350,17207476,+,AluJr4,SINE,Alu,2,132,-180,17207349,17207656 -2 + chr19 17207616 17207729 chr19,17207593,17207729,+,AluSz,SINE,Alu,1,136,-176,17207593,17207905 -4 + chr19 17207729 17208010 chr19,17207729,17208035,+,AluSp,SINE,Alu,1,308,-5,17207729,17208040 -1 + chr19 17296215 17296353 chr19,17296215,17296353,-,AluJr4,SINE,Alu,-176,136,1,17296039,17296353 +6 - chr19 17360932 17360959 chr19,17360901,17361215,-,AluSq,SINE,Alu,0,313,1,17360901,17361215 -1 - chr19 17362181 17362250 chr19,17362181,17362250,+,(CCCCAG)n,Simple_repeat,Simple_repeat,1,71,0,17362181,17362250 +6 + chr19 17362518 17362562 chr19,17362518,17362562,+,(CCAATG)n,Simple_repeat,Simple_repeat,1,46,0,17362518,17362562 +6 + chr19 17391850 17391895 chr19,17391850,17391895,+,GA-rich,Low_complexity,Low_complexity,1,47,0,17391850,17391895 -6 + chr19 17392191 17392284 chr19,17392191,17392484,+,AluSx1,SINE,Alu,2,294,-18,17392190,17392502 -1 + chr19 17406017 17406063 chr19,17406017,17406063,+,G-rich,Low_complexity,Low_complexity,1,46,0,17406017,17406063 +6 + chr19 17406297 17406352 chr19,17406297,17406352,+,MIRb,SINE,MIR,112,169,-99,17406186,17406451 +6 + chr19 17413097 17413217 chr19,17412652,17413217,-,LTR34,LTR,ERV1,-150,549,40,17412502,17413256 -5 - chr19 17413217 17413305 chr19,17413217,17413378,+,AluJo,SINE,Alu,4,164,-148,17413214,17413526 +5 + chr19 17414136 17414299 chr19,17413998,17414299,+,AluSx1,SINE,Alu,1,301,-11,17413998,17414310 +5 + chr19 17414257 17414299 chr19,17413998,17414299,+,AluSx1,SINE,Alu,1,301,-11,17413998,17414310 -5 + chr19 17414586 17414888 chr19,17414586,17414888,+,AluSz,SINE,Alu,1,302,-10,17414586,17414898 +5 + chr19 17414916 17415097 chr19,17414916,17415097,+,AluSx,SINE,Alu,11,197,-115,17414906,17415212 +5 + chr19 17415139 17415738 chr19,17415139,17415773,+,LTR6A,LTR,ERV1,6,564,0,17415134,17415773 +5 + chr19 17418815 17418828 chr19,17418726,17418828,-,FLAM_A,SINE,Alu,-10,132,39,17418716,17418866 -2 - chr19 17418828 17418904 chr19,17418828,17419385,+,LTR75_1,LTR,ERV1,1,546,0,17418828,17419385 +5 + chr19 17419305 17419385 chr19,17418828,17419385,+,LTR75_1,LTR,ERV1,1,546,0,17418828,17419385 -5 + chr19 17419385 17419409 chr19,17419385,17419409,-,FLAM_A,SINE,Alu,-104,38,20,17419281,17419428 +6 - chr19 17419594 17419721 chr19,17419594,17419721,-,AluSc,SINE,Alu,-182,127,1,17419412,17419721 +6 - chr19 17421914 17421960 chr19,17421659,17421960,+,AluSx1,SINE,Alu,1,302,-10,17421659,17421970 -4 + chr19 17421960 17422008 chr19,17421960,17422008,-,MER58C,DNA,hAT-Charlie,-170,45,2,17421790,17422009 +6 - chr19 17422298 17422324 chr19,17422298,17422330,+,(TCCCAC)n,Simple_repeat,Simple_repeat,1,35,0,17422298,17422330 -1 + chr19 17452289 17452436 chr19,17452289,17452436,-,L2b,LINE,L2,0,3375,3222,17452289,17455657 +6 - chr19 17452693 17452737 chr19,17452693,17452737,+,G-rich,Low_complexity,Low_complexity,1,45,0,17452693,17452737 -6 + chr19 17452926 17452969 chr19,17452926,17453089,-,AluSz6,SINE,Alu,-17,295,134,17452909,17453222 +1 - chr19 17491076 17491197 chr19,17491051,17491214,+,AluSx,SINE,Alu,134,296,-16,17490918,17491230 -3 + chr19 17503436 17503463 chr19,17503311,17503463,-,MER58A,DNA,hAT-Charlie,-17,207,70,17503294,17503532 +5 - chr19 17503463 17503622 chr19,17503463,17503649,-,AluJo,SINE,Alu,-14,298,127,17503449,17503775 +2 - chr19 17510100 17510318 chr19,17509910,17510318,-,L1M4,LINE,L1,-1252,4894,4466,17508658,17514783 +5 - chr19 17510318 17510486 chr19,17510318,17510486,-,FRAM,SINE,Alu,-8,168,1,17510310,17510486 +6 - chr19 17510486 17510536 chr19,17510486,17510536,-,AluYk11,SINE,Alu,-260,51,2,17510226,17510537 +6 - chr19 17510536 17510635 chr19,17510536,17510635,-,L1M4,LINE,L1,-1681,4465,4364,17508855,17514998 +6 - chr19 17518330 17518386 chr19,17518015,17518386,+,L1MC,LINE,L1,2896,3306,-2840,17515120,17521226 -5 + chr19 17518518 17518644 chr19,17518518,17518830,-,AluSx1,SINE,Alu,0,312,1,17518518,17518830 +2 - chr19 17520421 17520565 chr19,17520265,17520580,+,AluSq10,SINE,Alu,1,309,-4,17520265,17520584 -1 + chr19 17613722 17613858 chr19,17613702,17614009,-,AluSc,SINE,Alu,0,309,1,17613702,17614009 -1 - chr19 17614149 17614306 chr19,17614009,17614306,-,AluSx1,SINE,Alu,-15,297,1,17613994,17614306 -2 - chr19 17622651 17622683 chr19,17622651,17622683,+,(CAC)n,Simple_repeat,Simple_repeat,1,32,0,17622651,17622683 +6 + chr19 17622711 17622771 chr19,17622711,17622771,-,AluSg7,SINE,Alu,-61,248,189,17622650,17622959 -6 - chr19 17622775 17622955 chr19,17622775,17622955,-,MIRb,SINE,MIR,-51,217,35,17622724,17622989 -6 - chr19 17871273 17871386 chr19,17871242,17871386,-,MIR,SINE,MIR,-3,265,90,17871239,17871475 +5 - chr19 17871582 17871615 chr19,17871582,17871615,+,L3,LINE,CR1,3952,3984,-115,17867631,17871730 -6 + chr19 17871641 17871705 chr19,17871641,17871719,+,MIRc,SINE,MIR,84,162,-106,17871558,17871825 -1 + chr19 18151315 18151399 chr19,18151224,18151399,-,MIRb,SINE,MIR,-12,256,71,18151212,18151469 +4 - chr19 18217186 18217307 chr19,18217158,18217465,-,AluJr,SINE,Alu,-4,308,1,18217154,18217465 -3 - chr19 18443178 18443211 chr19,18443178,18443211,+,(CCGGC)n,Simple_repeat,Simple_repeat,1,33,0,18443178,18443211 +6 + chr19 18443578 18443597 chr19,18443578,18443605,+,(CACA)n,Simple_repeat,Simple_repeat,1,27,0,18443578,18443605 +5 + chr19 18531613 18531628 chr19,18531577,18531628,+,MIR1_Amn,SINE,MIR,106,157,-73,18531472,18531701 +1 + chr19 18532437 18532448 chr19,18532357,18532448,+,L2c,LINE,L2,3061,3157,-230,18529297,18532678 +2 + chr19 18535986 18535997 chr19,18535739,18535997,+,MLT1K,LTR,ERVL-MaLR,332,589,-6,18535408,18536003 +2 + chr19 18558305 18558513 chr19,18558305,18558513,+,MIRb,SINE,MIR,38,256,-6,18558268,18558519 -6 + chr19 18558549 18558691 chr19,18558549,18558691,-,MIRb,SINE,MIR,-45,223,87,18558504,18558777 +6 - chr19 18558975 18559000 chr19,18558975,18559000,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,18558975,18559000 -6 + chr19 18559003 18559274 chr19,18559003,18559274,-,AluSx1,SINE,Alu,-28,284,15,18558975,18559288 +6 - chr19 18561429 18561560 chr19,18561272,18561571,+,AluSq2,SINE,Alu,3,300,-13,18561270,18561584 -1 + chr19 18881680 18881828 chr19,18881648,18881828,+,L2b,LINE,L2,2992,3223,-203,18878657,18882031 +1 + chr19 18881828 18882072 chr19,18881828,18882109,-,AluSx1,SINE,Alu,-20,292,1,18881808,18882109 -4 - chr19 18883087 18883123 chr19,18882996,18883123,-,FLAM_A,SINE,Alu,-16,126,2,18882980,18883124 -2 - chr19 18883220 18883376 chr19,18883220,18883385,-,MER33,DNA,hAT-Charlie,-7,317,155,18883213,18883539 -5 - chr19 18946081 18946195 chr19,18945883,18946195,-,AluJb,SINE,Alu,0,312,1,18945883,18946195 -2 - chr19 18946195 18946228 chr19,18946195,18946257,+,MIR,SINE,MIR,204,261,-1,18945992,18946258 +4 + chr19 18946503 18946691 chr19,18946503,18946691,+,L2b,LINE,L2,3088,3286,-89,18943416,18946780 +6 + chr19 18992052 18992285 chr19,18992052,18992348,-,AluSc,SINE,Alu,-13,296,1,18992039,18992348 -4 - chr19 18992588 18992651 chr19,18992348,18992651,-,AluSx1,SINE,Alu,-11,301,1,18992337,18992651 -2 - chr19 19254760 19254924 chr19,19254760,19254924,-,FRAM,SINE,Alu,-10,166,2,19254750,19254925 +6 - chr19 19255262 19255565 chr19,19255262,19255565,+,AluSx1,SINE,Alu,1,303,-9,19255262,19255574 -6 + chr19 19255645 19255724 chr19,19255645,19255724,-,L2a,LINE,L2,-2,3424,3221,19255643,19258944 -6 - chr19 19255645 19255724 chr19,19255645,19255724,-,L2a,LINE,L2,-2,3424,3221,19255643,19258944 +6 - chr19 19255724 19255825 chr19,19255724,19255825,-,MIRb,SINE,MIR,-124,144,34,19255600,19255858 -6 - chr19 19255724 19255825 chr19,19255724,19255825,-,MIRb,SINE,MIR,-124,144,34,19255600,19255858 +6 - chr19 19255825 19255861 chr19,19255825,19255861,-,L2a,LINE,L2,-2,3220,3122,19255823,19258982 -6 - chr19 19255825 19255861 chr19,19255825,19255861,-,L2a,LINE,L2,-2,3220,3122,19255823,19258982 +6 - chr19 19256196 19256255 chr19,19256196,19256255,+,MIRb,SINE,MIR,123,179,-89,19256074,19256344 -6 + chr19 19257326 19257348 chr19,19257326,19257348,+,(GAG)n,Simple_repeat,Simple_repeat,1,22,0,19257326,19257348 -6 + chr19 19257850 19257905 chr19,19257850,19257905,+,(CCCCAG)n,Simple_repeat,Simple_repeat,1,55,0,19257850,19257905 -6 + chr19 19402053 19402306 chr19,19402053,19402357,-,AluJr,SINE,Alu,-7,305,1,19402046,19402357 +2 - chr19 19402444 19402603 chr19,19402406,19402713,+,AluSc,SINE,Alu,1,305,-4,19402406,19402717 -1 + chr19 19606350 19606607 chr19,19606088,19606607,+,MLT1E1A,LTR,ERVL-MaLR,3,678,-2,19606086,19606609 +1 + chr19 19606696 19606765 chr19,19606696,19607013,+,AluSx,SINE,Alu,1,305,-7,19606696,19607020 +4 + chr19 19608140 19608373 chr19,19608070,19608373,+,AluSz,SINE,Alu,1,306,-6,19608070,19608379 +2 + chr19 19608373 19608413 chr19,19608373,19608413,+,AluYi6_4d,SINE,Alu,243,282,-29,19608131,19608442 +6 + chr19 19608413 19608446 chr19,19608413,19608446,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,33,0,19608413,19608446 +6 + chr19 19608644 19608660 chr19,19608644,19608689,+,(ATGC)n,Simple_repeat,Simple_repeat,1,46,0,19608644,19608689 +5 + chr19 19757366 19757430 chr19,19757108,19757430,+,AluSc,SINE,Alu,1,309,0,19757108,19757430 -5 + chr19 19757430 19758126 chr19,19757430,19758126,-,MSTA-int,LTR,ERVL-MaLR,-53,1578,884,19757377,19759009 +5 - chr19 19761038 19761104 chr19,19760792,19761104,+,AluSp,SINE,Alu,1,311,-2,19760792,19761106 -5 + chr19 19761108 19761421 chr19,19761108,19761520,+,ERVL-B4-int,LTR,ERVL,1182,1616,-4098,19759927,19765618 -5 + chr19 19762538 19762646 chr19,19762255,19762865,+,ERVL-B4-int,LTR,ERVL,1735,2333,-3381,19760521,19766246 -3 + chr19 19771572 19771805 chr19,19771215,19771932,+,L1MDa,LINE,L1,2667,3428,-3109,19768549,19775041 -5 + chr19 19773878 19773993 chr19,19773859,19773993,+,L1MDa,LINE,L1,3750,3885,-2652,19770110,19776645 -5 + chr19 19773993 19774098 chr19,19773993,19774098,-,AluSq10,SINE,Alu,0,313,214,19773993,19774311 +6 - chr19 19774865 19775166 chr19,19774865,19775166,-,AluSx1,SINE,Alu,-9,303,2,19774856,19775167 +6 - chr19 19786775 19786855 chr19,19786775,19786855,-,AluSx,SINE,Alu,-232,80,1,19786543,19786855 -6 - chr19 19786868 19786884 chr19,19786868,19786895,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,19786868,19786895 +5 + chr19 19789680 19789821 chr19,19789659,19789957,-,AluSx,SINE,Alu,-13,299,1,19789646,19789957 -3 - chr19 19789991 19790051 chr19,19789991,19790051,+,L1MA9,LINE,L1,5917,5974,-338,19784075,19790389 -6 + chr19 19806281 19806376 chr19,19806258,19806555,-,AluSp,SINE,Alu,-15,298,1,19806243,19806555 -5 - chr19 19895471 19895558 chr19,19895410,19895558,+,AluSx,SINE,Alu,49,213,-99,19895362,19895657 -4 + chr19 19895559 19895847 chr19,19895559,19897352,+,HERVE_a-int,LTR,ERV1,6040,7847,0,19889520,19897352 -1 + chr19 19958489 19958554 chr19,19958163,19958689,+,LTR66,LTR,ERVL,1,517,-93,19958163,19958782 +3 + chr19 19963119 19963464 chr19,19962699,19964290,+,HERVL66-int,LTR,ERVL,2654,4329,0,19960046,19964290 +5 + chr19 20150361 20150548 chr19,20148767,20150702,-,SVA_F,Retroposon,SVA,0,1375,271,20148767,20150972 +1 - chr19 20176100 20176809 chr19,20175332,20176814,-,SVA_A,Retroposon,SVA,0,1387,57,20175332,20176870 +5 - chr19 20207344 20207635 chr19,20207344,20207635,-,AluSp,SINE,Alu,-21,292,2,20207323,20207636 +6 - chr19 20207646 20207702 chr19,20207646,20207702,-,MER5A,DNA,hAT-Charlie,-123,66,11,20207523,20207712 +6 - chr19 20207860 20208078 chr19,20207860,20208078,+,L1MC4,LINE,L1,7288,7509,-533,20200573,20208611 -6 + chr19 20209074 20209224 chr19,20209074,20209224,+,MER5B,DNA,hAT-Charlie,17,177,-1,20209058,20209225 -6 + chr19 20209232 20209370 chr19,20209232,20209370,-,MER5A1,DNA,hAT-Charlie,0,166,31,20209232,20209400 +6 - chr19 20209602 20209707 chr19,20209602,20209707,-,MIRb,SINE,MIR,-16,252,157,20209586,20209863 +6 - chr19 20216146 20216238 chr19,20215866,20216238,-,MER21C,LTR,ERVL,-43,895,443,20215823,20216680 +5 - chr19 20216250 20216467 chr19,20216250,20216467,+,MER92B,LTR,ERV1,36,249,-387,20216215,20216854 -6 + chr19 20216467 20216761 chr19,20216467,20216761,-,AluSx1,SINE,Alu,-16,296,1,20216451,20216761 +6 - chr19 20216761 20217068 chr19,20216761,20217068,+,MER92B,LTR,ERV1,250,558,-78,20216512,20217146 -6 + chr19 20220597 20221668 chr19,20220440,20221668,-,LTR70,LTR,ERV1,0,1286,1,20220440,20221668 +5 - chr19 20228010 20228481 chr19,20227425,20228481,-,L1P2,LINE,L1,-3963,2221,1174,20223462,20229654 +5 - chr19 20240500 20240637 chr19,20240271,20240961,-,LTR66,LTR,ERVL,0,610,1,20240271,20240961 +3 - chr19 20301309 20301387 chr19,20301053,20301447,+,MSTB,LTR,ERVL-MaLR,1,402,-24,20301053,20301471 -3 + chr19 20321186 20321305 chr19,20320046,20321730,-,HERVK14-int,LTR,ERVK,-4428,1668,1,20315618,20321730 +1 - chr19 20432552 20432598 chr19,20432120,20432598,-,LTR2B,LTR,ERV1,0,483,1,20432120,20432598 -1 - chr19 20432598 20432711 chr19,20432598,20432904,+,LTR66,LTR,ERVL,281,610,0,20432318,20432904 +4 + chr19 20528194 20528474 chr19,20528182,20528474,-,AluSq2,SINE,Alu,-22,291,1,20528160,20528474 -2 - chr19 20528481 20528615 chr19,20528481,20528738,-,AluJb,SINE,Alu,-25,287,24,20528456,20528761 -5 - chr19 20580207 20580321 chr19,20580134,20580357,-,AluSp,SINE,Alu,-17,296,2,20580117,20580358 +3 - chr19 20611559 20611625 chr19,20611050,20611625,+,LTR61,LTR,ERV1,1,559,0,20611050,20611625 +1 + chr19 20611625 20611855 chr19,20611625,20612547,+,HERV3-int,LTR,ERV1,1,949,-7852,20611625,20620399 +4 + chr19 20615059 20615389 chr19,20614494,20617555,+,HERV3-int,LTR,ERV1,5312,8426,0,20609183,20617555 +5 + chr19 20746923 20747318 chr19,20746819,20747318,-,LTR2C,LTR,ERV1,0,501,1,20746819,20747318 +5 - chr19 20747318 20755137 chr19,20747318,20755137,-,HERVE-int,LTR,ERV1,0,7813,1,20747318,20755137 +6 - chr19 20755137 20755250 chr19,20755137,20755632,-,LTR2C,LTR,ERV1,0,501,1,20755137,20755632 +1 - chr19 20926870 20927177 chr19,20926870,20927177,-,MER92B,LTR,ERV1,-74,562,258,20926796,20927434 +6 - chr19 20927177 20927463 chr19,20927177,20927463,+,AluSp,SINE,Alu,7,295,-18,20927171,20927481 -6 + chr19 20927463 20927604 chr19,20927463,20927604,-,MER92B,LTR,ERV1,-379,257,117,20927084,20927720 +6 - chr19 20927604 20927879 chr19,20927604,20927879,+,AluSx4,SINE,Alu,1,279,-31,20927604,20927910 -6 + chr19 20927879 20927965 chr19,20927879,20927965,-,MER92B,LTR,ERV1,-520,116,33,20927359,20927997 +6 - chr19 20928000 20928331 chr19,20928000,20928331,+,MER21C,LTR,ERVL,521,895,-43,20927480,20928374 -6 + chr19 20972262 20972517 chr19,20969493,20972864,-,BSR/Beta,Satellite,Satellite,-271,3439,1,20969222,20972864 -1 - chr19 21444241 21444414 chr19,21442981,21444414,-,SVA_B,Retroposon,SVA,0,1383,71,21442981,21444484 +5 - chr19 21452040 21452274 chr19,21452036,21452274,-,AluSp,SINE,Alu,-11,302,70,21452025,21452343 +5 - chr19 21452491 21452683 chr19,21452491,21452683,+,L1MA2,LINE,L1,6102,6304,0,21446390,21452683 -6 + chr19 21453003 21453294 chr19,21453003,21453294,+,AluSp,SINE,Alu,1,291,-22,21453003,21453316 -5 + chr19 21453528 21453834 chr19,21453528,21453834,+,AluSq4,SINE,Alu,2,311,0,21453527,21453834 -6 + chr19 21454299 21454665 chr19,21454299,21454665,-,MER4-int,LTR,ERV1,-729,5869,5512,21453570,21460176 +6 - chr19 21454665 21454975 chr19,21454665,21454975,+,AluSc,SINE,Alu,1,309,0,21454665,21454975 -6 + chr19 21454975 21455218 chr19,21454975,21455218,-,MER4-int,LTR,ERV1,-1087,5511,5284,21453888,21460501 +6 - chr19 21455218 21455451 chr19,21455218,21455451,+,AluSg,SINE,Alu,2,297,-13,21455217,21455464 -5 + chr19 21455451 21456510 chr19,21455451,21456510,-,MER4-int,LTR,ERV1,-1315,5283,4167,21454136,21460676 +6 - chr19 21485577 21485666 chr19,21485556,21485688,-,AluJb,SINE,Alu,-176,136,1,21485380,21485688 -3 - chr19 21486105 21486153 chr19,21485734,21486324,-,BSR/Beta,Satellite,Satellite,-16,582,1,21485718,21486324 -3 - chr19 21488311 21488456 chr19,21487701,21489061,-,BSR/Beta,Satellite,Satellite,-14,1329,1,21487687,21489061 -3 - chr19 21489665 21489770 chr19,21489366,21491470,-,BSR/Beta,Satellite,Satellite,-58,2112,1,21489308,21491470 -3 - chr19 21490403 21490514 chr19,21489366,21491470,-,BSR/Beta,Satellite,Satellite,-58,2112,1,21489308,21491470 -3 - chr19 21490801 21490877 chr19,21489366,21491470,-,BSR/Beta,Satellite,Satellite,-58,2112,1,21489308,21491470 -3 - chr19 21490989 21491102 chr19,21489366,21491470,-,BSR/Beta,Satellite,Satellite,-58,2112,1,21489308,21491470 -3 - chr19 21491209 21491311 chr19,21489366,21491470,-,BSR/Beta,Satellite,Satellite,-58,2112,1,21489308,21491470 -3 - chr19 21493266 21493847 chr19,21492858,21493864,-,BSR/Beta,Satellite,Satellite,-46,1005,1,21492812,21493864 -3 - chr19 21494120 21494302 chr19,21494010,21494302,-,BSR/Beta,Satellite,Satellite,-1,282,1,21494009,21494302 -1 - chr19 21495094 21495207 chr19,21494376,21496037,-,BSR/Beta,Satellite,Satellite,-60,1660,1,21494316,21496037 -3 - chr19 21496652 21496722 chr19,21496402,21497417,-,BSR/Beta,Satellite,Satellite,-46,984,1,21496356,21497417 -3 - chr19 21498199 21498758 chr19,21497905,21498758,-,BSR/Beta,Satellite,Satellite,-31,835,1,21497874,21498758 -2 - chr19 21498780 21498848 chr19,21498780,21498848,-,BSR/Beta,Satellite,Satellite,-76,76,8,21498704,21498855 -6 - chr19 21498854 21498993 chr19,21498854,21498993,-,MER41B,LTR,ERV1,-495,139,1,21498359,21498993 -6 - chr19 21499183 21499476 chr19,21499183,21499476,+,AluSx1,SINE,Alu,5,298,-14,21499179,21499490 +5 + chr19 21499481 21499773 chr19,21499481,21499773,+,AluSg7,SINE,Alu,1,292,-17,21499481,21499790 +6 + chr19 21499773 21499893 chr19,21499773,21499928,+,MER57A-int,LTR,ERV1,3772,3929,-2258,21496002,21502186 +5 + chr19 21501271 21502841 chr19,21501204,21502841,+,MER57A-int,LTR,ERV1,4258,5974,-213,21496947,21503054 +2 + chr19 21502841 21502885 chr19,21502841,21502885,-,OldhAT1,DNA,hAT-Ac,-2460,388,349,21500381,21503233 -6 - chr19 21502885 21503086 chr19,21502885,21503086,+,MER57A-int,LTR,ERV1,5975,6187,0,21496911,21503086 +6 + chr19 21503143 21503168 chr19,21503143,21503168,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,21503143,21503168 +6 + chr19 21503183 21503238 chr19,21503183,21503411,+,MER57B1,LTR,ERV1,173,398,-3,21503011,21503414 +5 + chr19 21554640 21554661 chr19,21554353,21554661,-,AluSx1,SINE,Alu,-9,303,1,21554344,21554661 +5 - chr19 21554661 21554952 chr19,21554661,21556088,-,L1PA8,LINE,L1,-5014,1752,315,21549647,21556402 +2 - chr19 21571258 21571539 chr19,21571258,21571756,-,MLT1H,LTR,ERVL-MaLR,0,549,9,21571258,21571764 +2 - chr19 21591778 21591870 chr19,21591669,21591870,-,L1ME4c,LINE,L1,-279,551,427,21591390,21592296 +4 - chr19 21592120 21592409 chr19,21592120,21592409,-,AluSq10,SINE,Alu,-24,289,1,21592096,21592409 +6 - chr19 21592484 21592706 chr19,21592484,21592706,-,MIRb,SINE,MIR,-23,245,16,21592461,21592721 +6 - chr19 21593105 21593323 chr19,21593105,21593323,-,L2b,LINE,L2,-3,3372,3133,21593102,21596455 +6 - chr19 21593330 21593853 chr19,21593330,21593853,-,BSR/Beta,Satellite,Satellite,-27,526,1,21593303,21593853 +5 - chr19 21593942 21594006 chr19,21593942,21595681,-,BSR/Beta,Satellite,Satellite,-10,1680,1,21593932,21595681 +1 - chr19 21594426 21594628 chr19,21593942,21595681,-,BSR/Beta,Satellite,Satellite,-10,1680,1,21593932,21595681 +1 - chr19 21768846 21769127 chr19,21768846,21769340,-,MLT1H,LTR,ERVL-MaLR,0,549,11,21768846,21769350 +2 - chr19 21788880 21789100 chr19,21787828,21792221,-,HERVK3-int,LTR,ERVK,-927,6275,1790,21786901,21794010 +5 - chr19 21793517 21793824 chr19,21793141,21793824,-,ERVL-E-int,LTR,ERVL,-1711,3956,3230,21791430,21797053 +1 - chr19 21966116 21967442 chr19,21966116,21967442,-,L1PA17,LINE,L1,-14,6152,4712,21966102,21972153 +6 - chr19 21967442 21967685 chr19,21967442,21967685,-,AluSx,SINE,Alu,-69,243,1,21967373,21967685 +6 - chr19 21967685 21968529 chr19,21967685,21968855,-,L1PA17,LINE,L1,-1435,4711,3478,21966250,21972332 +1 - chr19 22017978 22018261 chr19,22017978,22018267,-,AluSq4,SINE,Alu,-23,288,1,22017955,22018267 +2 - chr19 22022084 22022284 chr19,22021749,22024692,-,HERVL-int,LTR,ERVL,-2411,3243,266,22019338,22024957 +3 - chr19 22022472 22022599 chr19,22021749,22024692,-,HERVL-int,LTR,ERVL,-2411,3243,266,22019338,22024957 +3 - chr19 22026236 22026345 chr19,22025692,22026776,+,BSR/Beta,Satellite,Satellite,1,1078,-9,22025692,22026785 -3 + chr19 22027199 22027301 chr19,22026822,22027301,+,BSR/Beta,Satellite,Satellite,1,472,-6,22026822,22027307 -4 + chr19 22034673 22034797 chr19,22034109,22035899,+,BSR/Beta,Satellite,Satellite,1,1740,-44,22034109,22035943 -3 + chr19 22034881 22034998 chr19,22034109,22035899,+,BSR/Beta,Satellite,Satellite,1,1740,-44,22034109,22035943 -3 + chr19 22035098 22035209 chr19,22034109,22035899,+,BSR/Beta,Satellite,Satellite,1,1740,-44,22034109,22035943 -3 + chr19 22036165 22036315 chr19,22035928,22036675,+,BSR/Beta,Satellite,Satellite,1,732,0,22035928,22036675 -1 + chr19 22043500 22043525 chr19,22039727,22045019,+,BSR/Beta,Satellite,Satellite,1,5230,0,22039727,22045019 -5 + chr19 22045879 22045985 chr19,22045327,22046223,+,BSR/Beta,Satellite,Satellite,1,869,-3,22045327,22046226 -3 + chr19 22046091 22046223 chr19,22045327,22046223,+,BSR/Beta,Satellite,Satellite,1,869,-3,22045327,22046226 -4 + chr19 22046279 22046312 chr19,22046279,22046445,+,BSR/Beta,Satellite,Satellite,3,163,-216,22046277,22046661 -2 + chr19 22049815 22050005 chr19,22046741,22050192,+,BSR/Beta,Satellite,Satellite,1,3442,-1,22046741,22050193 -1 + chr19 22243254 22243440 chr19,22242821,22243440,+,BSR/Beta,Satellite,Satellite,1,615,0,22242821,22243440 -5 + chr19 22243465 22244026 chr19,22243465,22244026,+,BSR/Beta,Satellite,Satellite,1,569,0,22243465,22244026 -6 + chr19 22244026 22244341 chr19,22244026,22244341,-,AluSg,SINE,Alu,0,310,1,22244026,22244341 +6 - chr19 22244341 22245347 chr19,22244341,22246126,+,BSR/Beta,Satellite,Satellite,1,1731,-44,22244341,22246170 -1 + chr19 22259693 22259791 chr19,22259119,22260038,+,BSR/Beta,Satellite,Satellite,1,893,0,22259119,22260038 +1 + chr19 22261071 22261335 chr19,22261071,22261363,+,MER4A,LTR,ERV1,368,663,-1,22260704,22261364 +5 + chr19 22455988 22456119 chr19,22454822,22456119,-,L1PREC2,LINE,L1,-2360,3786,2482,22452462,22458600 -1 - chr19 22456274 22456459 chr19,22456274,22456499,+,LTR70,LTR,ERV1,1,233,-478,22456274,22456977 +5 + chr19 22525308 22525369 chr19,22524806,22525369,+,LTR61,LTR,ERV1,1,556,-3,22524806,22525372 -4 + chr19 22525369 22525854 chr19,22525369,22525854,+,HERV3-int,LTR,ERV1,1,480,-8255,22525369,22534109 -6 + chr19 22525973 22527538 chr19,22525973,22527538,+,HERV3-int,LTR,ERV1,463,2085,-6341,22525511,22533879 -6 + chr19 22527797 22527949 chr19,22527797,22528208,+,HERV3-int,LTR,ERV1,2078,2476,-5950,22525720,22534158 -1 + chr19 22615557 22615856 chr19,22615514,22615856,-,LTR21B,LTR,ERV1,0,437,83,22615514,22615938 +5 - chr19 22615688 22615903 chr19,22615688,22615903,-,LTR21C,LTR,ERVL,-251,260,6,22615437,22615908 +6 - chr19 22671354 22671458 chr19,22671061,22671471,+,L1PA17,LINE,L1,5742,6152,-14,22665320,22671485 -3 + chr19 22714452 22714562 chr19,22713717,22715742,+,BSR/Beta,Satellite,Satellite,1,2015,-1,22713717,22715743 -3 + chr19 22716763 22716991 chr19,22716090,22718606,+,BSR/Beta,Satellite,Satellite,1,2510,0,22716090,22718606 -1 + chr19 22752256 22752451 chr19,22752256,22752451,+,L1MA3,LINE,L1,6108,6305,0,22746149,22752451 -6 + chr19 22752807 22752839 chr19,22752807,22752839,+,(TAATTT)n,Simple_repeat,Simple_repeat,1,33,0,22752807,22752839 -6 + chr19 22752936 22752985 chr19,22752936,22752985,+,(TTTATAT)n,Simple_repeat,Simple_repeat,1,50,0,22752936,22752985 -6 + chr19 22754074 22754382 chr19,22754074,22754382,+,AluSx1,SINE,Alu,1,298,-14,22754074,22754396 -6 + chr19 22754787 22754875 chr19,22754787,22755092,+,AluSp,SINE,Alu,1,302,-11,22754787,22755103 -1 + chr19 22914239 22914289 chr19,22914239,22914516,-,BSR/Beta,Satellite,Satellite,-12,270,1,22914227,22914516 +1 - chr19 23015075 23015343 chr19,23014691,23016283,+,BSR/Beta,Satellite,Satellite,1,1580,-9,23014691,23016292 -5 + chr19 23016121 23016283 chr19,23014691,23016283,+,BSR/Beta,Satellite,Satellite,1,1580,-9,23014691,23016292 -5 + chr19 23017718 23017909 chr19,23017154,23018657,+,BSR/Beta,Satellite,Satellite,1,1475,-1,23017154,23018658 -3 + chr19 23023346 23023697 chr19,23022452,23025546,+,BSR/Beta,Satellite,Satellite,1,3017,-1,23022452,23025547 -1 + chr19 23046958 23047096 chr19,23045999,23047733,+,BSR/Beta,Satellite,Satellite,1,1719,-6,23045999,23047739 -5 + chr19 23054871 23055179 chr19,23054871,23055179,-,AluSq2,SINE,Alu,-6,307,1,23054865,23055179 +6 - chr19 23055185 23055330 chr19,23055185,23056945,+,BSR/Beta,Satellite,Satellite,1,1741,0,23055185,23056945 -2 + chr19 23055482 23055790 chr19,23055185,23056945,+,BSR/Beta,Satellite,Satellite,1,1741,0,23055185,23056945 -3 + chr19 23056303 23056409 chr19,23055185,23056945,+,BSR/Beta,Satellite,Satellite,1,1741,0,23055185,23056945 -3 + chr19 23057040 23057220 chr19,23057040,23057645,+,BSR/Beta,Satellite,Satellite,1,620,0,23057040,23057645 -2 + chr19 23058466 23058579 chr19,23058466,23058757,+,AluY,SINE,Alu,1,291,-20,23058466,23058777 -2 + chr19 23060174 23060204 chr19,23060173,23060204,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,31,0,23060173,23060204 -4 + chr19 23060236 23060318 chr19,23060236,23061455,+,BSR/Beta,Satellite,Satellite,1,1186,0,23060236,23061455 -1 + chr19 23060647 23060998 chr19,23060236,23061455,+,BSR/Beta,Satellite,Satellite,1,1186,0,23060236,23061455 -1 + chr19 23061173 23061265 chr19,23060236,23061455,+,BSR/Beta,Satellite,Satellite,1,1186,0,23060236,23061455 -1 + chr19 23061611 23061752 chr19,23061567,23061806,+,BSR/Beta,Satellite,Satellite,1,238,0,23061567,23061806 -1 + chr19 23068473 23068564 chr19,23066605,23068731,+,BSR/Beta,Satellite,Satellite,1,2086,-50,23066605,23068781 -5 + chr19 23069249 23069457 chr19,23068889,23069457,+,BSR/Beta,Satellite,Satellite,1,576,0,23068889,23069457 -5 + chr19 23095024 23095154 chr19,23095024,23097856,-,BSR/Beta,Satellite,Satellite,-19,2795,1,23095005,23097856 -5 - chr19 23095263 23095440 chr19,23095024,23097856,-,BSR/Beta,Satellite,Satellite,-19,2795,1,23095005,23097856 -5 - chr19 23095544 23095616 chr19,23095024,23097856,-,BSR/Beta,Satellite,Satellite,-19,2795,1,23095005,23097856 -5 - chr19 23098340 23098413 chr19,23098162,23099501,-,BSR/Beta,Satellite,Satellite,-57,1340,1,23098105,23099501 -3 - chr19 23100050 23100361 chr19,23099767,23100630,-,BSR/Beta,Satellite,Satellite,-30,890,1,23099737,23100630 -5 - chr19 23257255 23257392 chr19,23256963,23257392,+,BSR/Beta,Satellite,Satellite,1,407,-5,23256963,23257397 -5 + chr19 23257392 23257596 chr19,23257392,23257694,+,AluSp,SINE,Alu,1,305,-8,23257392,23257702 -2 + chr19 23259906 23260430 chr19,23259249,23260430,+,BSR/Beta,Satellite,Satellite,1,1195,-4,23259249,23260434 -5 + chr19 23260430 23260738 chr19,23260430,23260738,+,AluSp,SINE,Alu,2,310,-3,23260429,23260741 -5 + chr19 23260738 23260934 chr19,23260738,23261516,+,BSR/Beta,Satellite,Satellite,1,762,-22,23260738,23261538 -5 + chr19 23261224 23261516 chr19,23260738,23261516,+,BSR/Beta,Satellite,Satellite,1,762,-22,23260738,23261538 -5 + chr19 23261561 23262208 chr19,23261561,23262208,+,BSR/Beta,Satellite,Satellite,1,664,-4,23261561,23262212 -6 + chr19 23262363 23262658 chr19,23262363,23262658,+,AluSq,SINE,Alu,1,295,-18,23262363,23262676 -1 + chr19 23262777 23263874 chr19,23262777,23264633,+,BSR/Beta,Satellite,Satellite,1,1839,0,23262777,23264633 -1 + chr19 23269163 23269444 chr19,23269141,23269444,+,AluY,SINE,Alu,1,303,-8,23269141,23269452 -5 + chr19 23269616 23269722 chr19,23269616,23269722,-,MIR,SINE,MIR,-124,138,34,23269492,23269755 +6 - chr19 23270017 23270292 chr19,23270017,23270314,+,AluSq,SINE,Alu,1,302,-11,23270017,23270325 -2 + chr19 23272619 23272723 chr19,23272483,23272741,+,AluSq2,SINE,Alu,39,298,-15,23272445,23272756 -3 + chr19 23323968 23324377 chr19,23322645,23324377,+,(CTC)n,Simple_repeat,Simple_repeat,1,1821,0,23322645,23324377 +1 + chr19 23324517 23324602 chr19,23324517,23324602,+,(TATA)n,Simple_repeat,Simple_repeat,1,85,0,23324517,23324602 +6 + chr19 23324606 23324808 chr19,23324606,23324808,-,AluJb,SINE,Alu,-29,283,64,23324577,23324871 -6 - chr19 23326023 23326163 chr19,23326023,23326163,+,L2c,LINE,L2,3011,3148,-239,23323013,23326402 +6 + chr19 23326323 23326624 chr19,23326323,23326624,-,AluSx1,SINE,Alu,-10,302,3,23326313,23326626 -6 - chr19 23328246 23328552 chr19,23328246,23328552,-,L2b,LINE,L2,-144,3243,2910,23328102,23331461 -6 - chr19 23399233 23399271 chr19,23398587,23399271,-,L1PB2,LINE,L1,-5,6146,5451,23398582,23404721 +5 - chr19 23399272 23399580 chr19,23399272,23399580,-,MER4E,LTR,ERV1,-191,575,255,23399081,23399834 +5 - chr19 23399578 23399968 chr19,23399578,23399968,+,BSR/Beta,Satellite,Satellite,1,379,0,23399578,23399968 -6 + chr19 23399968 23400279 chr19,23399968,23400279,+,AluSx,SINE,Alu,1,311,-1,23399968,23400280 -6 + chr19 23400279 23400804 chr19,23400279,23400804,+,BSR/Beta,Satellite,Satellite,1,511,0,23400279,23400804 -6 + chr19 23400821 23401047 chr19,23400821,23402996,+,BSR/Beta,Satellite,Satellite,1,2220,-1,23400821,23402997 -5 + chr19 23402177 23402512 chr19,23400821,23402996,+,BSR/Beta,Satellite,Satellite,1,2220,-1,23400821,23402997 -5 + chr19 23403206 23403358 chr19,23403076,23403358,+,BSR/Beta,Satellite,Satellite,1,289,0,23403076,23403358 -5 + chr19 23403358 23403509 chr19,23403358,23403510,-,AluSz,SINE,Alu,-8,304,154,23403350,23403663 +2 - chr19 23403720 23403747 chr19,23403510,23403964,+,LTR22A,LTR,ERVK,1,458,0,23403510,23403964 -3 + chr19 23404752 23404846 chr19,23404123,23405401,+,BSR/Beta,Satellite,Satellite,1,1278,-1,23404123,23405402 -5 + chr19 23404951 23405108 chr19,23404123,23405401,+,BSR/Beta,Satellite,Satellite,1,1278,-1,23404123,23405402 -5 + chr19 23405258 23405335 chr19,23404123,23405401,+,BSR/Beta,Satellite,Satellite,1,1278,-1,23404123,23405402 -5 + chr19 23406000 23406105 chr19,23405633,23406791,+,BSR/Beta,Satellite,Satellite,1,1167,-29,23405633,23406820 -3 + chr19 23407898 23408091 chr19,23407613,23408283,+,BSR/Beta,Satellite,Satellite,1,671,-4,23407613,23408287 -1 + chr19 23817599 23817793 chr19,23817564,23817793,-,LTR4,LTR,ERV1,0,596,360,23817564,23818152 +5 - chr19 23818067 23818765 chr19,23818067,23818765,-,HERV3-int,LTR,ERV1,0,8426,7721,23818067,23826485 +6 - chr19 23818762 23819445 chr19,23818762,23821500,-,HERV3-int,LTR,ERV1,-1945,6856,3783,23816817,23825282 +2 - chr19 23823740 23823906 chr19,23821505,23823963,-,HERV3-int,LTR,ERV1,-5952,2474,3,23815553,23823965 +3 - chr19 23827056 23827081 chr19,23826987,23827081,-,L1MB2,LINE,L1,-390,6017,5940,23826597,23833020 +4 - chr19 23827167 23827182 chr19,23827167,23827197,-,LTR6A,LTR,ERV1,-462,102,73,23826705,23827269 +2 - chr19 23874552 23874701 chr19,23874378,23874877,-,MER1A,DNA,hAT-Charlie,0,529,1,23874378,23874877 +1 - chr19 23927788 23927911 chr19,23927780,23927911,-,L1MB2,LINE,L1,-3378,3001,2860,23924402,23930770 -1 - chr19 23927911 23928306 chr19,23927911,23928306,+,MSTB,LTR,ERVL-MaLR,1,409,-19,23927911,23928325 +6 + chr19 23928319 23928495 chr19,23928319,23928495,-,L1MB2,LINE,L1,-3512,2864,2681,23924807,23931175 -6 - chr19 23928495 23928528 chr19,23928495,23928528,+,(AGAT)n,Simple_repeat,Simple_repeat,1,33,0,23928495,23928528 +6 + chr19 23928528 23928796 chr19,23928528,23928796,-,L1MB2,LINE,L1,-3696,2680,2389,23924832,23931184 -6 - chr19 23928807 23929074 chr19,23928807,23929074,-,AluJb,SINE,Alu,-21,291,24,23928786,23929097 -6 - chr19 23929076 23929287 chr19,23929076,23929292,-,L1MB2,LINE,L1,-3967,2417,2186,23925109,23931477 -5 - chr19 23949579 23949692 chr19,23949475,23949692,+,LTR9D,LTR,ERV1,1,190,-455,23949475,23950147 -5 + chr19 24048937 24049014 chr19,24048761,24049049,-,AluJb,SINE,Alu,-45,267,3,24048716,24049051 -3 - chr19 24049446 24049548 chr19,24049446,24050120,-,BSR/Beta,Satellite,Satellite,-46,670,1,24049400,24050120 -4 - chr19 24063816 24063912 chr19,24063255,24063912,-,BSR/Beta,Satellite,Satellite,-30,646,1,24063225,24063912 -2 - chr19 24064547 24064669 chr19,24064519,24064825,-,AluSp,SINE,Alu,-6,307,2,24064513,24064826 -3 - chr19 24065463 24065528 chr19,24064930,24065528,-,BSR/Beta,Satellite,Satellite,0,601,1,24064930,24065528 -2 - chr19 24065582 24065705 chr19,24065582,24065705,-,BSR/Beta,Satellite,Satellite,-46,123,1,24065536,24065705 -6 - chr19 24065811 24066565 chr19,24065811,24066565,-,BSR/Beta,Satellite,Satellite,-36,737,1,24065775,24066565 -6 - chr19 24066565 24066683 chr19,24066565,24066683,+,AluSg,SINE,Alu,1,118,-192,24066565,24066875 +6 + chr19 24066683 24066736 chr19,24066683,24066736,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,53,0,24066683,24066736 +5 + chr19 24066736 24066909 chr19,24066736,24066929,+,AluSg,SINE,Alu,119,310,0,24066618,24066929 +5 + chr19 24078481 24078621 chr19,24078317,24078621,+,LTR23,LTR,ERV1,128,436,-1,24078190,24078622 +1 + chr19 24079034 24080551 chr19,24079034,24080551,+,PRIMA41-int,LTR,ERV1,1259,2764,-4992,24077776,24085543 +6 + chr19 24080551 24080669 chr19,24080551,24080796,+,AluSz,SINE,Alu,3,301,-11,24080549,24080807 +5 + chr19 24146701 24146728 chr19,24146701,24146728,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,24146701,24146728 +1 + chr19 24146746 24146781 chr19,24146746,24146781,+,(TA)n,Simple_repeat,Simple_repeat,1,35,0,24146746,24146781 +6 + chr19 24146900 24147063 chr19,24146900,24147063,+,L1PB4,LINE,L1,5991,6152,-4,24140910,24147067 +6 + chr19 27638483 27638584 chr19,27637589,27638584,-,LTR5_Hs,LTR,ERVK,0,968,1,27637589,27638584 +5 - chr19 27638584 27638678 chr19,27638584,27638679,-,SVA_F,Retroposon,SVA,-450,925,846,27638134,27639524 +2 - chr19 27639300 27639665 chr19,27638679,27641547,-,HERVK-int,LTR,ERVK,-95,7441,4584,27638584,27646130 +1 - chr19 27640378 27640638 chr19,27638679,27641547,-,HERVK-int,LTR,ERVK,-95,7441,4584,27638584,27646130 +1 - chr19 27646346 27646453 chr19,27641860,27646453,-,HERVK-int,LTR,ERVK,-2953,4583,2,27638907,27646454 +4 - chr19 27646472 27646483 chr19,27646472,27647704,+,HSAT4,Satellite,centr,1,1234,0,27646472,27647704 -1 + chr19 27684580 27684607 chr19,27680724,27689494,-,ALR/Alpha,Satellite,centr,-69,8827,1,27680655,27689494 +5 - chr19 27701491 27701587 chr19,27695438,27701587,-,L1PA4,LINE,L1,0,6155,2,27695438,27701588 +4 - chr19 27701588 27701645 chr19,27701588,27703452,-,ALR/Alpha,Satellite,centr,-23,1838,1,27701565,27703452 +2 - chr19 27715786 27715858 chr19,27713310,27716272,-,ALR/Alpha,Satellite,centr,-51,2962,1,27713259,27716272 +5 - chr19 27723029 27723180 chr19,27721192,27727513,-,ALR/Alpha,Satellite,centr,-75,6297,1,27721117,27727513 +5 - chr19 27730273 27730986 chr19,27727792,27730986,-,ALR/Alpha,Satellite,centr,-87,3208,1,27727705,27730986 +5 - chr19 27731022 27732447 chr19,27731022,27733277,-,ALR/Alpha,Satellite,centr,-40,2256,1,27730982,27733277 +2 - chr19 27732796 27732967 chr19,27731022,27733277,-,ALR/Alpha,Satellite,centr,-40,2256,1,27730982,27733277 +3 - chr19 27746098 27746290 chr19,27745823,27746290,+,LTR22B1,LTR,ERVK,1,526,0,27745823,27746290 -1 + chr19 27746290 27746340 chr19,27746290,27747008,+,HERVK22-int,LTR,ERVK,1,741,-6096,27746290,27753104 -2 + chr19 27757194 27757346 chr19,27757194,27757346,-,L1PA4,LINE,L1,-3,6152,6001,27757191,27763346 +6 - chr19 27757594 27760849 chr19,27757594,27766950,+,HSAT4,Satellite,centr,1,9364,0,27757594,27766950 -1 + chr19 27771721 27771812 chr19,27771721,27771812,-,AluJb,SINE,Alu,-67,245,160,27771654,27771971 +6 - chr19 27773988 27774089 chr19,27773988,27774089,-,AluJb,SINE,Alu,-62,250,157,27773926,27774245 +6 - chr19 27774160 27774204 chr19,27774160,27774204,+,(TTGTTCT)n,Simple_repeat,Simple_repeat,1,45,0,27774160,27774204 -6 + chr19 27775984 27776033 chr19,27775984,27776033,+,(TTATTG)n,Simple_repeat,Simple_repeat,1,51,0,27775984,27776033 -6 + chr19 27776387 27776423 chr19,27776387,27776423,+,GA-rich,Low_complexity,Low_complexity,1,36,0,27776387,27776423 -6 + chr19 27776600 27776639 chr19,27776600,27776639,+,(CTGT)n,Simple_repeat,Simple_repeat,1,41,0,27776600,27776639 -6 + chr19 27778936 27778978 chr19,27778936,27778978,+,(CTTT)n,Simple_repeat,Simple_repeat,1,42,0,27778936,27778978 -6 + chr19 27790491 27791542 chr19,27790480,27791542,+,L1M4c,LINE,L1,4011,5272,-1110,27786470,27792652 -5 + chr19 27791615 27791901 chr19,27791615,27791923,+,AluSc,SINE,Alu,1,307,-2,27791615,27791925 -5 + chr19 27796098 27796424 chr19,27796098,27796430,+,L1PB3,LINE,L1,5820,6154,0,27790279,27796430 +5 + chr19 27799247 27799313 chr19,27799247,27799313,+,MER53,DNA,hAT,3,65,-128,27799245,27799441 +6 + chr19 27799313 27799466 chr19,27799313,27800379,+,MER11C,LTR,ERVK,1,1071,0,27799313,27800379 +5 + chr19 27802781 27802842 chr19,27801830,27802842,-,LTR13,LTR,ERVK,0,1007,1,27801830,27802842 -1 - chr19 27806217 27806260 chr19,27806217,27806260,+,(TTCC)n,Simple_repeat,Simple_repeat,1,44,0,27806217,27806260 +6 + chr19 27806266 27806569 chr19,27806266,27806569,-,AluSp,SINE,Alu,0,313,1,27806266,27806569 -6 - chr19 27849730 27850069 chr19,27847473,27850169,-,HERVL66-int,LTR,ERVL,0,4329,1621,27847473,27851789 +5 - chr19 27901026 27901204 chr19,27901026,27901849,-,L2b,LINE,L2,-4,3422,2473,27901022,27904321 -4 - chr19 28122234 28122290 chr19,28122169,28122602,+,MLT1H,LTR,ERVL-MaLR,89,547,-2,28122081,28122604 +3 + chr19 28125405 28125430 chr19,28125405,28125589,+,MLT1I,LTR,ERVL-MaLR,259,448,0,28125147,28125589 +5 + chr19 28320200 28320258 chr19,28320091,28320509,-,LTR39,LTR,ERV1,-371,412,1,28319720,28320509 +3 - chr19 28337495 28337590 chr19,28337495,28337590,+,MLT1K,LTR,ERVL-MaLR,1,115,-480,28337495,28338070 -6 + chr19 28371775 28372034 chr19,28371719,28372122,+,MSTB1,LTR,ERVL-MaLR,4,430,-2,28371716,28372124 -5 + chr19 28378420 28378498 chr19,28378303,28378498,-,MIR3,SINE,MIR,-60,202,19,28378243,28378516 +4 - chr19 28386112 28386204 chr19,28385725,28386513,+,L1M4,LINE,L1,28,835,-6682,28385698,28393195 -1 + chr19 28395287 28395305 chr19,28395287,28395343,-,LTR16C,LTR,ERVL,-14,475,429,28395273,28395771 +2 - chr19 28396328 28396356 chr19,28396260,28396356,-,LTR16C,LTR,ERVL,-119,370,302,28396141,28396657 +4 - chr19 28396356 28396428 chr19,28396356,28396839,+,MER66B,LTR,ERV1,1,486,0,28396356,28396839 -1 + chr19 28418679 28418840 chr19,28418679,28418840,-,MLT1N2,LTR,ERVL-MaLR,-376,186,9,28418303,28418848 +6 - chr19 28418993 28419284 chr19,28418993,28419284,+,AluJo,SINE,Alu,1,281,-31,28418993,28419315 -6 + chr19 28429350 28429490 chr19,28429263,28429653,+,MER67A,LTR,ERV1,16,395,-148,28429248,28429801 -1 + chr19 28435388 28435712 chr19,28435351,28435712,-,LTR7,LTR,ERV1,-2,448,1,28435349,28435712 +5 - chr19 28437485 28437718 chr19,28437451,28437799,-,LTR16A2,LTR,ERVL,-6,489,68,28437445,28437866 +5 - chr19 28453844 28453935 chr19,28453763,28454036,-,MSTA1,LTR,ERVL-MaLR,0,465,184,28453763,28454219 +3 - chr19 28457011 28457073 chr19,28456844,28457073,-,MER112,DNA,hAT-Charlie,-4,257,2,28456840,28457074 +5 - chr19 28468369 28468384 chr19,28468369,28468443,+,GA-rich,Low_complexity,Low_complexity,1,76,0,28468369,28468443 -1 + chr19 28491864 28492264 chr19,28491822,28492264,+,L1MA3,LINE,L1,5865,6305,0,28485958,28492264 -5 + chr19 28492266 28492486 chr19,28492266,28492486,+,MLT1L,LTR,ERVL-MaLR,343,582,-28,28491924,28492514 -6 + chr19 28518423 28518728 chr19,28518423,28518731,+,AluYm1,SINE,Alu,1,306,-5,28518423,28518736 +5 + chr19 28535100 28535245 chr19,28534181,28535245,+,L1MD3,LINE,L1,2424,2895,-3649,28531758,28538894 -4 + chr19 28535245 28535277 chr19,28535245,28535742,+,LTR55,LTR,ERVL?,2,540,-8,28535244,28535750 -1 + chr19 28606688 28606838 chr19,28606629,28606838,+,LTR2,LTR,ERV1,292,501,0,28606338,28606838 +1 + chr19 28606838 28607104 chr19,28606838,28607227,+,HERVE-int,LTR,ERV1,1,384,-7463,28606838,28614690 +4 + chr19 28610260 28610331 chr19,28607467,28613524,+,HERVE-int,LTR,ERV1,512,6548,-1265,28606956,28614789 +3 + chr19 28610982 28612154 chr19,28607467,28613524,+,HERVE-int,LTR,ERV1,512,6548,-1265,28606956,28614789 +3 + chr19 28612439 28613524 chr19,28607467,28613524,+,HERVE-int,LTR,ERV1,512,6548,-1265,28606956,28614789 +2 + chr19 28613524 28613570 chr19,28613524,28613570,+,(CA)n,Simple_repeat,Simple_repeat,1,46,0,28613524,28613570 +6 + chr19 28613570 28614817 chr19,28613570,28614817,+,HERVE-int,LTR,ERV1,6549,7810,-3,28607022,28614820 +6 + chr19 28614817 28615229 chr19,28614817,28615273,+,LTR2,LTR,ERV1,1,463,0,28614817,28615273 +5 + chr19 28632620 28632691 chr19,28632088,28632691,+,L1PA15-16,LINE,L1,9,628,-6706,28632080,28639397 -4 + chr19 28726294 28726337 chr19,28726293,28726437,+,MIR,SINE,MIR,73,235,-27,28726221,28726464 -3 + chr19 28727728 28727764 chr19,28727728,28727764,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,38,0,28727728,28727764 -6 + chr19 28879056 28879170 chr19,28879056,28879210,-,MIR3,SINE,MIR,-29,179,20,28879027,28879229 -5 - chr19 28892931 28892959 chr19,28892650,28892975,+,MLT1I,LTR,ERVL-MaLR,64,386,-25,28892587,28893000 +1 + chr19 28936877 28937005 chr19,28936747,28937082,+,MLT1B,LTR,ERVL-MaLR,1,390,0,28936747,28937082 +3 + chr19 28949437 28949578 chr19,28949268,28949578,-,AluJr4,SINE,Alu,0,312,1,28949268,28949578 +5 - chr19 28960506 28960550 chr19,28960469,28960550,-,MLT1I,LTR,ERVL-MaLR,-13,611,534,28960456,28961083 +5 - chr19 28960639 28960697 chr19,28960639,28960697,-,MLT1I,LTR,ERVL-MaLR,-119,292,233,28960520,28960929 +6 - chr19 28960697 28960809 chr19,28960697,28961452,+,LTR8B,LTR,ERV1,1,820,0,28960697,28961452 -2 + chr19 28964440 28964501 chr19,28964368,28964869,+,L1MD1,LINE,L1,5742,6242,0,28958627,28964869 -3 + chr19 28965131 28965355 chr19,28964872,28965578,+,L1MC5,LINE,L1,8373,9076,-228,28956500,28965806 +1 + chr19 28964911 28964943 chr19,28964872,28965578,+,L1MC5,LINE,L1,8373,9076,-228,28956500,28965806 -1 + chr19 28967056 28967157 chr19,28967056,28967157,+,X9_LINE,LINE,L1,555,647,-289,28966502,28967446 +6 + chr19 28967630 28967660 chr19,28967630,28967660,+,(TGTG)n,Simple_repeat,Simple_repeat,1,30,0,28967630,28967660 +6 + chr19 28967661 28967939 chr19,28967661,28967939,-,L2b,LINE,L2,-29,3346,3059,28967632,28970997 -6 - chr19 28968350 28968483 chr19,28968350,28968483,-,AluJr,SINE,Alu,-179,133,1,28968171,28968483 -1 - chr19 28968828 28969148 chr19,28968828,28969182,+,LTR16D,LTR,ERVL,280,674,-1,28968549,28969183 +5 + chr19 28969672 28969802 chr19,28969570,28969802,-,MIR,SINE,MIR,-28,234,6,28969542,28969807 -1 - chr19 28970200 28970299 chr19,28969992,28970345,+,MSTD,LTR,ERVL-MaLR,5,396,0,28969988,28970345 +1 + chr19 29002590 29002623 chr19,29002590,29002776,-,LTR39,LTR,ERV1,0,783,606,29002590,29003381 -1 - chr19 29003602 29003710 chr19,29003093,29003710,-,LTR39,LTR,ERV1,-178,605,1,29002915,29003710 -2 - chr19 29010745 29010895 chr19,29010745,29010895,-,L1ME1,LINE,L1,-2,6177,6017,29010743,29016911 -6 - chr19 29012511 29012599 chr19,29012294,29012599,-,AluJo,SINE,Alu,-12,300,1,29012282,29012599 -2 - chr19 29012599 29012906 chr19,29012599,29012906,-,MLT1B,LTR,ERVL-MaLR,-59,331,42,29012540,29012947 -5 - chr19 29012916 29013110 chr19,29012916,29013110,+,MER34,LTR,ERV1,27,229,-313,29012890,29013423 +6 + chr19 29013160 29013370 chr19,29013160,29013370,+,MER34,LTR,ERV1,315,542,0,29012846,29013370 +6 + chr19 29013591 29013632 chr19,29013591,29013632,-,L2c,LINE,L2,-217,3170,3127,29013374,29016758 -6 - chr19 29213714 29213821 chr19,29213643,29213862,-,MIR,SINE,MIR,-14,248,8,29213629,29213869 -3 - chr19 29215281 29215367 chr19,29215266,29215367,-,MIRc,SINE,MIR,-118,150,48,29215148,29215414 -2 - chr19 29215503 29215606 chr19,29215503,29215606,-,FLAM_A,SINE,Alu,-32,110,8,29215471,29215613 -6 - chr19 29215664 29215815 chr19,29215664,29215869,+,MIRb,SINE,MIR,37,264,-4,29215628,29215873 +5 + chr19 29221028 29221515 chr19,29221028,29221515,+,MER87,LTR,ERV1,38,539,-2,29220991,29221517 +6 + chr19 29222603 29223092 chr19,29222603,29223092,+,L1ME4a,LINE,L1,5618,6117,-7,29216986,29223099 +6 + chr19 29391421 29391550 chr19,29391245,29391550,-,MLT1I,LTR,ERVL-MaLR,-21,390,99,29391224,29391648 +4 - chr19 29392921 29393048 chr19,29392921,29393048,-,AluJr4,SINE,Alu,-187,125,1,29392734,29393048 +6 - chr19 29395344 29395447 chr19,29395344,29395447,-,MIRb,SINE,MIR,-56,212,110,29395288,29395556 +6 - chr19 29397189 29397247 chr19,29397189,29397247,-,L2b,LINE,L2,0,3375,3317,29397189,29400563 +6 - chr19 29412231 29412338 chr19,29412221,29412338,-,AluJb,SINE,Alu,-10,302,184,29412211,29412521 +5 - chr19 29412357 29412722 chr19,29412357,29412722,+,THE1C,LTR,ERVL-MaLR,1,375,0,29412357,29412722 -6 + chr19 29412736 29412865 chr19,29412736,29412865,-,AluJr,SINE,Alu,-180,132,3,29412556,29412867 +6 - chr19 29412956 29412966 chr19,29412956,29413436,+,MLT1H,LTR,ERVL-MaLR,4,535,-14,29412953,29413450 -2 + chr19 29507224 29507396 chr19,29507224,29507396,-,MLT1K,LTR,ERVL-MaLR,-295,300,126,29506929,29507521 +6 - chr19 29508189 29508364 chr19,29508189,29508364,+,MIR,SINE,MIR,100,255,-7,29508090,29508371 -6 + chr19 29508365 29508724 chr19,29508365,29508724,+,L1PA17,LINE,L1,5793,6165,-1,29502573,29508725 -6 + chr19 29508987 29509041 chr19,29508987,29509136,-,L2,LINE,L2,-705,2714,2560,29508282,29511695 +1 - chr19 29915862 29916483 chr19,29915730,29916483,-,L1PA5,LINE,L1,-8,6146,5393,29915722,29921875 -1 - chr19 29916492 29916783 chr19,29916492,29916783,-,AluSx,SINE,Alu,-20,292,1,29916472,29916783 -6 - chr19 29916826 29917021 chr19,29916826,29917021,+,L1MCc,LINE,L1,808,1072,-5351,29916019,29922372 +6 + chr19 29917027 29917321 chr19,29917027,29917321,+,AluJr,SINE,Alu,25,311,-1,29917003,29917322 +6 + chr19 29917321 29917338 chr19,29917321,29917338,+,GA-rich,Low_complexity,Low_complexity,1,17,0,29917321,29917338 +6 + chr19 29917338 29917800 chr19,29917338,29917800,+,LTR10F,LTR,ERV1,1,511,0,29917338,29917800 +6 + chr19 29917800 29917830 chr19,29917800,29917835,+,GA-rich,Low_complexity,Low_complexity,18,51,0,29917783,29917835 +5 + chr19 30028741 30029916 chr19,30028580,30030640,-,L1MB7,LINE,L1,-288,2368,66,30028292,30030705 +1 - chr19 30219666 30219790 chr19,30219490,30219932,-,MLT1K,LTR,ERVL-MaLR,-2,593,149,30219488,30220080 +5 - chr19 30554251 30554554 chr19,30554251,30554554,-,AluSx,SINE,Alu,-5,307,1,30554246,30554554 -6 - chr19 30554596 30554811 chr19,30554596,30554811,-,MER58A,DNA,hAT-Charlie,-7,217,1,30554589,30554811 -6 - chr19 30665274 30665341 chr19,30665061,30665341,+,AluSq2,SINE,Alu,1,281,-32,30665061,30665373 -5 + chr19 30665345 30665379 chr19,30665345,30665379,+,(AAT)n,Simple_repeat,Simple_repeat,1,34,0,30665345,30665379 -6 + chr19 30946582 30946673 chr19,30946356,30946718,-,L1MEg,LINE,L1,-4289,2126,1739,30942067,30948456 -1 - chr19 30956774 30956914 chr19,30956774,30956914,+,MIRb,SINE,MIR,8,164,-104,30956767,30957018 +6 + chr19 31195590 31195703 chr19,31193900,31195800,+,L1MC1,LINE,L1,10,1922,-4586,31193891,31200386 +3 + chr19 31207520 31207663 chr19,31207520,31207689,-,MIR3,SINE,MIR,-17,191,15,31207503,31207703 -5 - chr19 31364297 31364351 chr19,31364232,31364351,-,AluSq2,SINE,Alu,-193,120,1,31364039,31364351 -1 - chr19 31364351 31364923 chr19,31364351,31364923,-,L1ME1,LINE,L1,-124,6055,5509,31364227,31370431 -6 - chr19 31365309 31365362 chr19,31365309,31365362,-,MIR3,SINE,MIR,-9,199,130,31365300,31365491 -6 - chr19 31466306 31466431 chr19,31466306,31466448,+,MIR,SINE,MIR,109,262,0,31466198,31466448 +5 + chr19 31542207 31542243 chr19,31542207,31542243,+,GA-rich,Low_complexity,Low_complexity,1,37,0,31542207,31542243 +6 + chr19 31554583 31554599 chr19,31554479,31554599,+,L2a,LINE,L2,3264,3389,-37,31551216,31554636 +2 + chr19 31588040 31588074 chr19,31587932,31588074,-,MER50,LTR,ERV1,-12,722,569,31587920,31588642 +5 - chr19 31588196 31588316 chr19,31588069,31588503,-,MER50,LTR,ERV1,-294,440,1,31587775,31588503 -1 - chr19 31588069 31588503 chr19,31588069,31588503,-,MER50,LTR,ERV1,-294,440,1,31587775,31588503 +1 - chr19 31588528 31588596 chr19,31588528,31588596,+,L2b,LINE,L2,3306,3374,-1,31585223,31588597 -6 + chr19 31590011 31590140 chr19,31590011,31590140,-,MIRb,SINE,MIR,-27,241,116,31589984,31590255 +6 - chr19 31591220 31591310 chr19,31591024,31591388,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,31591024,31591388 +3 + chr19 31591024 31591388 chr19,31591024,31591388,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,31591024,31591388 -6 + chr19 31591534 31591574 chr19,31591534,31591574,+,MLT1H2,LTR,ERVL-MaLR,84,122,-367,31591451,31591941 -6 + chr19 31591796 31591895 chr19,31591796,31591895,+,MLT1H2,LTR,ERVL-MaLR,390,489,0,31591407,31591895 -6 + chr19 31591903 31591988 chr19,31591903,31591988,+,L2a,LINE,L2,3315,3426,0,31588589,31591988 -6 + chr19 31592515 31592716 chr19,31592515,31592716,-,OldhAT1,DNA,hAT-Ac,-650,2198,1970,31591865,31594685 -6 - chr19 31592515 31592716 chr19,31592515,31592716,-,OldhAT1,DNA,hAT-Ac,-650,2198,1970,31591865,31594685 +6 - chr19 31908196 31908284 chr19,31908117,31908334,+,MIRb,SINE,MIR,31,268,0,31908087,31908334 -1 + chr19 31930358 31930396 chr19,31930358,31930396,+,(TGTT)n,Simple_repeat,Simple_repeat,1,39,0,31930358,31930396 -6 + chr19 31937216 31937268 chr19,31937007,31937268,-,HAL1ME,LINE,L1,-979,1486,1211,31936028,31938478 +4 - chr19 31941621 31941636 chr19,31941540,31941636,-,MER94,DNA,hAT-Blackjack,-3,131,25,31941537,31941660 +4 - chr19 31942310 31942447 chr19,31942246,31942452,-,MIRb,SINE,MIR,0,268,48,31942246,31942499 +3 - chr19 31967482 31967504 chr19,31967482,31967504,+,(TAT)n,Simple_repeat,Simple_repeat,1,22,0,31967482,31967504 -6 + chr19 32002491 32002772 chr19,32002424,32002772,-,MLT1E1,LTR,ERVL-MaLR,0,654,315,32002424,32003086 +5 - chr19 32025954 32026007 chr19,32025954,32026073,-,MIR,SINE,MIR,-91,171,37,32025863,32026109 -1 - chr19 32102088 32102110 chr19,32101627,32102110,-,L1PB4,LINE,L1,-1,6302,5657,32101626,32107766 +5 - chr19 32102292 32102501 chr19,32102227,32102529,+,AluSx1,SINE,Alu,1,305,-7,32102227,32102536 -3 + chr19 32105310 32105469 chr19,32105310,32105469,+,MIR,SINE,MIR,117,256,-6,32105194,32105475 -6 + chr19 32105586 32105618 chr19,32105586,32105618,+,(CACCTC)n,Simple_repeat,Simple_repeat,1,34,0,32105586,32105618 -6 + chr19 32399751 32399868 chr19,32399599,32399895,+,AluJb,SINE,Alu,1,302,-10,32399599,32399905 -3 + chr19 32687089 32687199 chr19,32687085,32687199,+,LTR9,LTR,ERV1,1,142,-470,32687085,32687669 -5 + chr19 32687219 32687268 chr19,32687219,32687352,+,LTR9,LTR,ERV1,198,328,-284,32687022,32687636 -2 + chr19 32718298 32718565 chr19,32718194,32718585,-,LTR8,LTR,ERV1,0,691,290,32718194,32718874 +5 - chr19 32719348 32719544 chr19,32719306,32719544,-,LTR8,LTR,ERV1,-475,216,2,32718831,32719545 +4 - chr19 32831295 32831331 chr19,32831284,32831587,-,AluY,SINE,Alu,-10,301,1,32831274,32831587 -1 - chr19 32832771 32832924 chr19,32832629,32832924,+,AluJo,SINE,Alu,1,298,-14,32832629,32832938 +2 + chr19 32875937 32876016 chr19,32875937,32876016,-,L1MB3,LINE,L1,-1,6182,6094,32875936,32882109 +6 - chr19 32876103 32876217 chr19,32876103,32876282,-,AluJb,SINE,Alu,-5,307,130,32876098,32876411 +2 - chr19 32878218 32878261 chr19,32878079,32878261,+,AluJr,SINE,Alu,126,299,-13,32877954,32878274 -4 + chr19 33178088 33178284 chr19,33178088,33178314,-,L1MEg,LINE,L1,-5407,677,386,33172681,33178699 -4 - chr19 33178506 33178651 chr19,33178473,33178750,-,AluSx,SINE,Alu,-28,284,9,33178445,33178758 -5 - chr19 33220346 33220362 chr19,33220346,33221414,+,L2a,LINE,L2,1989,3426,0,33218358,33221414 +5 + chr19 33220870 33221170 chr19,33220346,33221414,+,L2a,LINE,L2,1989,3426,0,33218358,33221414 +5 + chr19 33283978 33284239 chr19,33283964,33284262,+,AluSz6,SINE,Alu,1,298,-14,33283964,33284276 -5 + chr19 33300280 33300312 chr19,33300280,33300312,+,(CAAAA)n,Simple_repeat,Simple_repeat,1,32,0,33300280,33300312 +6 + chr19 33301815 33301873 chr19,33301695,33301873,+,G-rich,Low_complexity,Low_complexity,1,182,0,33301695,33301873 +2 + chr19 33304667 33304764 chr19,33304667,33304764,-,L2c,LINE,L2,-46,3329,3226,33304621,33307989 -6 - chr19 33304941 33305245 chr19,33304941,33305245,+,MLT1B,LTR,ERVL-MaLR,1,336,-54,33304941,33305299 +1 + chr19 33305265 33305331 chr19,33305265,33305515,-,L2c,LINE,L2,-208,3179,2924,33305057,33308438 -4 - chr19 33309280 33309387 chr19,33309099,33309408,+,AluJr,SINE,Alu,1,309,-3,33309099,33309411 +5 + chr19 33555714 33556084 chr19,33555714,33556084,-,THE1D,LTR,ERVL-MaLR,-3,378,1,33555711,33556084 -6 - chr19 33556686 33556762 chr19,33556667,33556762,-,MIR3,SINE,MIR,-54,154,49,33556613,33556810 -2 - chr19 33556800 33556894 chr19,33556800,33556894,+,MIR3,SINE,MIR,97,190,-18,33556704,33556912 +6 + chr19 33907363 33907563 chr19,33907363,33907563,+,MIRc,SINE,MIR,22,245,-23,33907342,33907586 +6 + chr19 33907743 33908066 chr19,33907743,33908066,-,AluJo,SINE,Alu,-1,311,1,33907742,33908066 -6 - chr19 33908147 33908379 chr19,33908147,33908379,+,MIRb,SINE,MIR,26,260,-8,33908122,33908387 +6 + chr19 34358536 34358691 chr19,34358536,34358691,+,L2c,LINE,L2,3201,3383,-43,34355336,34358734 -6 + chr19 34358786 34358916 chr19,34358786,34358936,+,FRAM,SINE,Alu,1,165,-11,34358786,34358947 -2 + chr19 34426241 34426276 chr19,34426241,34426276,+,G-rich,Low_complexity,Low_complexity,1,36,0,34426241,34426276 -6 + chr19 34577547 34577577 chr19,34577547,34577577,+,(AGC)n,Simple_repeat,Simple_repeat,1,30,0,34577547,34577577 -6 + chr19 34638122 34638149 chr19,34637741,34638149,+,MER57A-int,LTR,ERV1,3960,4276,-1911,34633782,34640060 -5 + chr19 34638165 34638254 chr19,34638165,34638459,+,AluSz6,SINE,Alu,1,299,-13,34638165,34638472 -2 + chr19 34640588 34640689 chr19,34640588,34640720,-,L1MB3,LINE,L1,0,6183,6051,34640588,34646770 +1 - chr19 34645498 34645573 chr19,34645498,34645573,+,(CACACA)n,Simple_repeat,Simple_repeat,1,75,0,34645498,34645573 +6 + chr19 34646358 34646410 chr19,34646358,34646410,+,(AGCACAC)n,Simple_repeat,Simple_repeat,1,57,0,34646358,34646410 +6 + chr19 34675717 34676296 chr19,34675656,34676296,-,LTR12_,LTR,ERV1,0,688,2,34675656,34676297 +5 - chr19 34676296 34676685 chr19,34676296,34676685,+,MER41B,LTR,ERV1,247,634,0,34676050,34676685 -6 + chr19 34677160 34677179 chr19,34677160,34677179,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,34677160,34677179 -6 + chr19 34733307 34733358 chr19,34733307,34733358,+,A-rich,Low_complexity,Low_complexity,1,52,0,34733307,34733358 -6 + chr19 34788582 34788674 chr19,34788440,34788816,+,L1MEg,LINE,L1,1332,1717,-4367,34787109,34793183 -5 + chr19 34811589 34812358 chr19,34811487,34812358,+,L1M5,LINE,L1,2427,3364,-2782,34809061,34815140 -5 + chr19 34812340 34812833 chr19,34812340,34812833,+,L1M5,LINE,L1,3490,3995,-2151,34808851,34814984 -6 + chr19 34812849 34813112 chr19,34812849,34813112,-,LTR87,LTR,ERVL?,-291,333,35,34812558,34813146 +6 - chr19 34813209 34813287 chr19,34813209,34813287,+,MIRb,SINE,MIR,3,81,-187,34813207,34813474 -6 + chr19 34813541 34813564 chr19,34813541,34813564,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,34813541,34813564 -6 + chr19 34818587 34818766 chr19,34818397,34818786,-,Tigger2a,DNA,TcMar-Tigger,0,434,4,34818397,34818789 +3 - chr19 34829164 34829253 chr19,34828296,34829776,+,L1MD,LINE,L1,2630,4240,-1906,34825667,34831682 -3 + chr19 34830406 34830436 chr19,34830313,34830436,-,LTR87,LTR,ERVL?,-273,351,228,34830040,34830663 +4 - chr19 34830516 34830526 chr19,34830516,34830746,+,L1M4,LINE,L1,4119,4325,-1821,34826398,34832567 -2 + chr19 34840210 34840221 chr19,34840210,34840495,+,AluJr4,SINE,Alu,1,281,-31,34840210,34840526 +4 + chr19 34841026 34841312 chr19,34841013,34841312,+,AluSq,SINE,Alu,1,299,-14,34841013,34841326 +2 + chr19 34841416 34841681 chr19,34841416,34841714,-,L1ME3A,LINE,L1,-1676,4470,4146,34839740,34845859 -5 - chr19 34849021 34849132 chr19,34849021,34849715,-,MER49,LTR,ERV1,0,923,22,34849021,34849736 -5 - chr19 34849278 34849549 chr19,34849021,34849715,-,MER49,LTR,ERV1,0,923,22,34849021,34849736 +5 - chr19 34852193 34852309 chr19,34852193,34852309,-,AluYc,SINE,Alu,-21,278,164,34852172,34852472 -6 - chr19 34852365 34852586 chr19,34852365,34852586,-,AluSx,SINE,Alu,-91,221,1,34852274,34852586 -6 - chr19 34853995 34854077 chr19,34853995,34854077,-,MIR,SINE,MIR,-167,95,14,34853828,34854090 -6 - chr19 34854185 34854414 chr19,34854185,34854414,+,LTR87,LTR,ERVL?,88,355,-269,34854098,34854683 +6 + chr19 34854488 34854767 chr19,34854488,34854767,-,AluSq2,SINE,Alu,-18,295,1,34854470,34854767 -6 - chr19 34854809 34855021 chr19,34854809,34855021,+,MER58C,DNA,hAT-Charlie,3,207,-8,34854807,34855029 +6 + chr19 34855023 34855304 chr19,34855023,34855802,-,L1MA5,LINE,L1,-354,5946,5687,34854669,34861488 -5 - chr19 34860177 34860576 chr19,34860177,34866213,+,L1PA4,LINE,L1,127,6151,-4,34860051,34866217 -1 + chr19 34898866 34898943 chr19,34898866,34899041,+,AluJb,SINE,Alu,137,311,-1,34898730,34899042 -1 + chr19 34902219 34902281 chr19,34902219,34902281,-,L1PA16,LINE,L1,-2,6164,6104,34902217,34908384 +6 - chr19 34902281 34902479 chr19,34902281,34902646,+,L1M5,LINE,L1,3924,4342,-1804,34898358,34904450 -2 + chr19 34902965 34902990 chr19,34902874,34902990,-,LTR87,LTR,ERVL?,-273,351,232,34902601,34903221 +4 - chr19 34904151 34904167 chr19,34904061,34904167,-,LTR87,LTR,ERVL?,-275,349,238,34903786,34904404 +4 - chr19 34904404 34904573 chr19,34904404,34904573,+,MIR,SINE,MIR,1,179,-83,34904404,34904656 -6 + chr19 34908135 34908188 chr19,34908135,34908394,+,MLT1A,LTR,ERVL-MaLR,1,312,-116,34908135,34908510 +5 + chr19 34949038 34949479 chr19,34948946,34949479,+,MER63C,DNA,hAT-Blackjack,117,659,-271,34948830,34949750 -5 + chr19 34949479 34949875 chr19,34949479,34949875,+,L1M5,LINE,L1,5348,5730,-449,34944132,34950324 -6 + chr19 34949874 34951205 chr19,34949874,34951901,+,L1MB3,LINE,L1,1545,3594,-3050,34948330,34954951 -1 + chr19 34998233 34998291 chr19,34998090,34998291,+,L1ME3Cz,LINE,L1,753,949,-48,34997338,34998339 -5 + chr19 34998291 34998601 chr19,34998291,34998602,-,AluSx,SINE,Alu,0,312,1,34998291,34998602 +2 - chr19 35000119 35000170 chr19,35000119,35000184,+,(TC)n,Simple_repeat,Simple_repeat,1,67,0,35000119,35000184 -1 + chr19 35014961 35015052 chr19,35014889,35015183,+,AluJr,SINE,Alu,6,295,-17,35014884,35015200 -5 + chr19 35024902 35025088 chr19,35024786,35025088,-,AluJr,SINE,Alu,-10,302,1,35024776,35025088 +4 - chr19 35025176 35025272 chr19,35025176,35025272,-,MIR,SINE,MIR,-17,245,143,35025159,35025414 +6 - chr19 35025272 35025335 chr19,35025272,35025543,-,AluSx1,SINE,Alu,-23,289,1,35025249,35025543 +1 - chr19 35036432 35036563 chr19,35036432,35036732,-,AluSx,SINE,Alu,-9,303,1,35036423,35036732 -4 - chr19 35036886 35037050 chr19,35036774,35037050,-,AluSz,SINE,Alu,-36,276,7,35036738,35037056 -2 - chr19 35059195 35059295 chr19,35059195,35059295,+,AluJo,SINE,Alu,17,117,-195,35059179,35059490 -6 + chr19 35059295 35059329 chr19,35059295,35059329,+,(ACAAA)n,Simple_repeat,Simple_repeat,1,36,0,35059295,35059329 -6 + chr19 35059329 35059493 chr19,35059329,35059493,+,AluJo,SINE,Alu,118,294,-18,35059212,35059511 -6 + chr19 35099324 35099387 chr19,35099324,35099408,+,AluJb,SINE,Alu,216,300,-12,35099109,35099420 -2 + chr19 35105969 35106078 chr19,35105326,35106078,+,(CAC)n,Simple_repeat,Simple_repeat,1,759,0,35105326,35106078 +1 + chr19 35107057 35107206 chr19,35107057,35107206,-,MLT1K,LTR,ERVL-MaLR,-81,514,345,35106976,35107550 -6 - chr19 35137645 35137930 chr19,35137620,35137930,-,AluSz6,SINE,Alu,-6,306,1,35137614,35137930 +5 - chr19 35138305 35138330 chr19,35138305,35138330,+,(TG)n,Simple_repeat,Simple_repeat,1,26,0,35138305,35138330 -6 + chr19 35138374 35138397 chr19,35138374,35138397,+,(CA)n,Simple_repeat,Simple_repeat,1,23,0,35138374,35138397 -6 + chr19 35138554 35138578 chr19,35138554,35138578,+,(GT)n,Simple_repeat,Simple_repeat,1,24,0,35138554,35138578 -6 + chr19 35138746 35138783 chr19,35138746,35138783,+,G-rich,Low_complexity,Low_complexity,1,37,0,35138746,35138783 -6 + chr19 35139261 35139302 chr19,35139261,35139302,+,(TG)n,Simple_repeat,Simple_repeat,1,41,0,35139261,35139302 -6 + chr19 35142956 35143018 chr19,35142956,35143018,+,(CGCCCC)n,Simple_repeat,Simple_repeat,1,63,0,35142956,35143018 +6 + chr19 35251440 35251601 chr19,35251383,35251601,-,MIR,SINE,MIR,-5,257,8,35251378,35251608 +5 - chr19 35253282 35253339 chr19,35253037,35253339,+,AluSx1,SINE,Alu,1,304,-8,35253037,35253347 -4 + chr19 35262871 35262911 chr19,35262871,35262911,+,(TTTTAT)n,Simple_repeat,Simple_repeat,1,41,0,35262871,35262911 +6 + chr19 35262998 35263098 chr19,35262998,35263300,+,AluSz6,SINE,Alu,1,302,-10,35262998,35263310 +4 + chr19 35264042 35264117 chr19,35263810,35264117,-,AluSx1,SINE,Alu,-14,298,1,35263796,35264117 -2 - chr19 35264287 35264316 chr19,35264287,35264316,+,GA-rich,Low_complexity,Low_complexity,1,31,0,35264287,35264316 +6 + chr19 35264714 35264804 chr19,35264714,35264854,+,MIR,SINE,MIR,102,242,-20,35264613,35264874 +5 + chr19 35330914 35331064 chr19,35330914,35331221,-,AluSz6,SINE,Alu,-5,307,2,35330909,35331222 -4 - chr19 35331708 35331862 chr19,35331566,35331862,+,AluSx,SINE,Alu,1,298,-14,35331566,35331876 +2 + chr19 35399511 35399657 chr19,35399184,35399804,+,MER49,LTR,ERV1,18,646,-277,35399167,35400081 +1 + chr19 35401059 35401117 chr19,35401035,35401214,-,L1ME4b,LINE,L1,-255,637,460,35400780,35401673 -3 - chr19 35407040 35407356 chr19,35407040,35407356,-,AluJr4,SINE,Alu,-1,311,1,35407039,35407356 -6 - chr19 35407417 35407712 chr19,35407417,35407712,-,AluSz,SINE,Alu,-11,301,2,35407406,35407713 -6 - chr19 35408092 35408397 chr19,35408092,35408397,-,AluSx1,SINE,Alu,0,312,1,35408092,35408397 -6 - chr19 35408602 35408715 chr19,35408602,35408715,+,LTR89,LTR,ERVL?,3,115,-764,35408600,35409479 +6 + chr19 35408779 35408803 chr19,35408779,35408803,-,AluJr,SINE,Alu,-3,309,286,35408776,35409088 -6 - chr19 35408803 35408829 chr19,35408803,35408829,+,(TTGG)n,Simple_repeat,Simple_repeat,1,26,0,35408803,35408829 +1 + chr19 35408829 35409113 chr19,35408829,35409113,-,AluJr,SINE,Alu,-27,285,1,35408802,35409113 -6 - chr19 35409507 35409600 chr19,35409507,35410241,-,L1MEd,LINE,L1,-2869,3277,2496,35406638,35412736 -5 - chr19 35411162 35411282 chr19,35411109,35411439,-,AluSx,SINE,Alu,0,312,1,35411109,35411439 -5 - chr19 35419160 35419385 chr19,35418933,35419414,+,MLT1K,LTR,ERVL-MaLR,23,572,-23,35418911,35419437 +5 + chr19 35424062 35424202 chr19,35423914,35424202,-,AluJr,SINE,Alu,-14,298,1,35423900,35424202 +5 - chr19 35424202 35424387 chr19,35424202,35424387,-,L2a,LINE,L2,-240,3186,2987,35423962,35427373 +6 - chr19 35540738 35540813 chr19,35540711,35540813,+,MIR,SINE,MIR,137,248,-14,35540575,35540827 -5 + chr19 35540848 35541173 chr19,35540848,35541173,+,AluSx,SINE,Alu,1,311,-1,35540848,35541174 -6 + chr19 35541180 35541469 chr19,35541180,35541469,+,AluJb,SINE,Alu,1,294,-18,35541180,35541487 -5 + chr19 35543945 35544253 chr19,35543945,35544253,+,L2b,LINE,L2,3023,3373,-2,35540923,35544255 -6 + chr19 35544340 35544515 chr19,35544340,35544515,+,L2,LINE,L2,2713,2890,-529,35541628,35545044 -6 + chr19 35597907 35597957 chr19,35597863,35598363,-,LTR36,LTR,ERV1,-4,607,8,35597859,35598370 -1 - chr19 35608285 35608394 chr19,35608259,35608394,+,L2b,LINE,L2,3021,3161,-265,35605239,35608659 -5 + chr19 35608430 35608660 chr19,35608430,35608660,+,MLT1J2,LTR,ERVL-MaLR,65,321,-127,35608366,35608787 -6 + chr19 35667948 35668087 chr19,35667798,35668087,-,AluJo,SINE,Alu,-21,291,1,35667777,35668087 +5 - chr19 35668318 35668452 chr19,35668318,35668452,-,MIRc,SINE,MIR,-99,169,19,35668219,35668470 +6 - chr19 35747214 35747303 chr19,35747214,35747303,-,AluYa8,SINE,Alu,0,310,220,35747214,35747522 +5 - chr19 35748129 35748194 chr19,35748106,35748194,+,MIRb,SINE,MIR,182,268,0,35747925,35748194 -4 + chr19 35751961 35752033 chr19,35751930,35752033,-,MIR3,SINE,MIR,-87,121,17,35751843,35752049 +4 - chr19 35769144 35769292 chr19,35768897,35769303,+,L2a,LINE,L2,2029,2500,-919,35766869,35770222 -5 + chr19 35770751 35770820 chr19,35770596,35770820,+,AluSx1,SINE,Alu,2,227,-85,35770595,35770905 -4 + chr19 35770841 35770864 chr19,35770841,35770864,+,(TC)n,Simple_repeat,Simple_repeat,1,23,0,35770841,35770864 -6 + chr19 35770917 35771027 chr19,35770917,35771027,+,L1ME2z,LINE,L1,6066,6199,-245,35764852,35771272 -6 + chr19 35901561 35901573 chr19,35901481,35901573,+,L2b,LINE,L2,2025,2114,-1305,35899457,35902878 -5 + chr19 35901573 35901853 chr19,35901573,35901853,-,AluSx1,SINE,Alu,0,312,8,35901573,35901860 +6 - chr19 35901853 35902464 chr19,35901853,35902464,+,L2b,LINE,L2,2115,2814,-605,35899739,35903069 -6 + chr19 35902988 35903289 chr19,35902988,35903289,-,AluJb,SINE,Alu,-10,302,2,35902978,35903290 +6 - chr19 35960512 35960587 chr19,35960435,35960587,-,AluSx,SINE,Alu,-163,149,1,35960272,35960587 -1 - chr19 35963547 35963674 chr19,35963485,35963674,-,MIRb,SINE,MIR,-29,239,46,35963456,35963719 -2 - chr19 35963942 35964063 chr19,35963942,35964109,+,MIRb,SINE,MIR,27,205,-63,35963916,35964172 +5 + chr19 36008638 36008691 chr19,36008636,36008696,+,G-rich,Low_complexity,Low_complexity,1,60,0,36008636,36008696 -5 + chr19 36009533 36009553 chr19,36009533,36009571,+,(GGCCGA)n,Simple_repeat,Simple_repeat,1,39,0,36009533,36009571 -2 + chr19 36016812 36016880 chr19,36016791,36016880,+,L2c,LINE,L2,2337,2432,-987,36014455,36017867 +2 + chr19 36045709 36045969 chr19,36045568,36045969,+,MLT1D,LTR,ERVL-MaLR,59,503,-2,36045510,36045971 +2 + chr19 36070239 36070419 chr19,36070145,36070419,-,AluSx1,SINE,Alu,0,312,40,36070145,36070458 -1 - chr19 36070669 36070925 chr19,36070669,36070925,-,Kanga11a,DNA,TcMar-Tc2,-439,531,244,36070230,36071168 -6 - chr19 36070925 36071070 chr19,36070925,36071217,+,AluSq2,SINE,Alu,1,298,-15,36070925,36071232 +5 + chr19 36144081 36144149 chr19,36143893,36144206,+,AluY,SINE,Alu,1,311,0,36143893,36144206 -5 + chr19 36148039 36148102 chr19,36147790,36148102,+,AluSq2,SINE,Alu,1,306,-7,36147790,36148109 -4 + chr19 36148259 36148348 chr19,36148259,36148527,+,AluJb,SINE,Alu,42,297,-15,36148218,36148542 -1 + chr19 36304580 36304812 chr19,36303371,36304965,+,SST1,Satellite,centr,1,1563,0,36303371,36304965 +1 + chr19 36307198 36307327 chr19,36305886,36307480,+,SST1,Satellite,centr,1,1563,0,36305886,36307480 +1 + chr19 36312151 36312465 chr19,36312151,36312465,-,AluSx1,SINE,Alu,-9,303,2,36312142,36312466 -6 - chr19 36312584 36312668 chr19,36312584,36312696,+,MER96B,DNA,hAT-Tip100,264,370,-47,36312321,36312743 +5 + chr19 36313471 36313759 chr19,36313471,36313759,+,AluSx1,SINE,Alu,1,297,-15,36313471,36313774 -6 + chr19 36313931 36313949 chr19,36313931,36313949,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,36313931,36313949 -6 + chr19 36313981 36314196 chr19,36313981,36314196,+,L1M5,LINE,L1,2802,3021,-3125,36311180,36317321 -6 + chr19 36314209 36314499 chr19,36314209,36314499,+,AluSx1,SINE,Alu,5,294,-18,36314205,36314517 -6 + chr19 36314957 36315073 chr19,36314957,36315073,+,L1MA7,LINE,L1,6145,6267,-24,36308813,36315097 -6 + chr19 36315164 36315185 chr19,36315164,36315185,+,(TA)n,Simple_repeat,Simple_repeat,1,21,0,36315164,36315185 -6 + chr19 36319716 36319813 chr19,36319700,36319813,+,MER33,DNA,hAT-Charlie,136,249,-75,36319565,36319888 -5 + chr19 36319813 36320108 chr19,36319813,36320108,-,AluY,SINE,Alu,-16,295,1,36319797,36320108 +6 - chr19 36320108 36320183 chr19,36320108,36320183,+,MER33,DNA,hAT-Charlie,250,316,-8,36319859,36320191 -6 + chr19 36320478 36320760 chr19,36320478,36320792,+,AluY,SINE,Alu,2,310,-1,36320477,36320793 -2 + chr19 36322130 36322384 chr19,36322120,36322410,+,AluSx1,SINE,Alu,14,301,-11,36322107,36322421 -1 + chr19 36324937 36325429 chr19,36324872,36325429,-,LTR6B,LTR,ERV1,-1,557,1,36324871,36325429 +5 - chr19 36325429 36325565 chr19,36325429,36325565,-,HERVS71-int,LTR,ERV1,-69,8909,8774,36325360,36334338 +6 - chr19 36325541 36327225 chr19,36325541,36327350,-,HERVS71-int,LTR,ERV1,-1906,7072,5189,36323635,36332538 +2 - chr19 36330253 36330482 chr19,36327346,36330482,-,HERVS71-int,LTR,ERV1,-5801,3177,4,36321545,36330485 +1 - chr19 36378028 36378063 chr19,36377983,36378063,-,LTR65,LTR,ERV1,-6,663,583,36377977,36378645 -1 - chr19 36378440 36378457 chr19,36378308,36378457,-,LTR65,LTR,ERV1,-499,170,18,36377809,36378474 -2 - chr19 36379388 36379405 chr19,36379388,36379690,-,AluJo,SINE,Alu,-10,302,1,36379378,36379690 +2 - chr19 36380719 36380777 chr19,36380459,36380777,+,AluSx,SINE,Alu,1,312,0,36380459,36380777 -4 + chr19 36490462 36491040 chr19,36490462,36492158,+,SVA_D,Retroposon,SVA,25,1384,-2,36490438,36492160 +5 + chr19 36534861 36534992 chr19,36534640,36535338,-,LTR78,LTR,ERV1,-63,1241,510,36534577,36535847 -5 - chr19 36535098 36535235 chr19,36534640,36535338,-,LTR78,LTR,ERV1,-63,1241,510,36534577,36535847 -5 - chr19 36574821 36574900 chr19,36574575,36574951,-,L1ME3,LINE,L1,-122,6042,5561,36574453,36580511 -3 - chr19 36577141 36577259 chr19,36576945,36577259,-,AluJb,SINE,Alu,-1,311,1,36576944,36577259 -1 - chr19 36577494 36577780 chr19,36577494,36577780,-,AluJo,SINE,Alu,-16,296,2,36577478,36577781 -6 - chr19 36594242 36594299 chr19,36594242,36594743,+,MLT1G1,LTR,ERVL-MaLR,33,564,-15,36594210,36594758 +5 + chr19 36594401 36594708 chr19,36594242,36594743,+,MLT1G1,LTR,ERVL-MaLR,33,564,-15,36594210,36594758 +5 + chr19 36628961 36629006 chr19,36628961,36629239,-,AluSx,SINE,Alu,-12,300,22,36628949,36629260 -4 - chr19 36629855 36629937 chr19,36629656,36629937,+,AluJb,SINE,Alu,3,295,-17,36629654,36629954 +2 + chr19 36668102 36668239 chr19,36667949,36668239,-,AluJr,SINE,Alu,-25,287,7,36667924,36668245 -1 - chr19 36668886 36669216 chr19,36668886,36669216,+,MER2,DNA,TcMar-Tigger,1,344,-1,36668886,36669217 +6 + chr19 36685730 36686015 chr19,36685730,36686144,-,MLT1H,LTR,ERVL-MaLR,0,549,86,36685730,36686229 +2 - chr19 36774863 36775167 chr19,36774863,36775167,-,AluY,SINE,Alu,-7,304,1,36774856,36775167 +6 - chr19 36775587 36775618 chr19,36775587,36775618,-,MIR1_Amn,SINE,MIR,-79,151,121,36775508,36775738 -6 - chr19 36775587 36775618 chr19,36775587,36775618,-,MIR1_Amn,SINE,MIR,-79,151,121,36775508,36775738 +6 - chr19 36776231 36776305 chr19,36776231,36776305,-,L1MEg,LINE,L1,-4088,1996,1919,36772143,36778223 -6 - chr19 36776303 36776348 chr19,36776303,36776348,-,L1MC4,LINE,L1,-463,7579,7535,36775840,36783882 -6 - chr19 36776376 36776685 chr19,36776376,36776685,-,AluJo,SINE,Alu,-1,311,3,36776375,36776687 -6 - chr19 36776686 36776875 chr19,36776686,36776875,-,L1MC4,LINE,L1,-496,7546,7325,36776190,36784199 -6 - chr19 36776937 36777063 chr19,36776937,36777063,+,AluJb,SINE,Alu,182,305,-7,36776756,36777070 +6 + chr19 36802458 36802652 chr19,36802435,36802733,-,AluY,SINE,Alu,-11,300,2,36802424,36802734 -5 - chr19 36812510 36812606 chr19,36812326,36812627,-,AluSx,SINE,Alu,-19,293,2,36812307,36812628 -3 - chr19 36827650 36827757 chr19,36827648,36827757,-,L2c,LINE,L2,-283,3104,2991,36827365,36830747 -2 - chr19 37091643 37091949 chr19,37091643,37091949,+,AluSx,SINE,Alu,1,302,-10,37091643,37091959 +6 + chr19 37092430 37092564 chr19,37092430,37092728,+,AluSx,SINE,Alu,1,297,-15,37092430,37092743 +5 + chr19 37133747 37133864 chr19,37133593,37133922,-,SST1,Satellite,centr,0,1563,1211,37133593,37135132 +3 - chr19 37141594 37141640 chr19,37141492,37141885,-,MLT1A,LTR,ERVL-MaLR,0,374,1,37141492,37141885 +1 - chr19 37256399 37256409 chr19,37256289,37256409,+,MIRb,SINE,MIR,36,153,-115,37256254,37256524 +1 + chr19 37262355 37262434 chr19,37262292,37262462,+,MER5A,DNA,hAT-Charlie,10,181,-8,37262283,37262470 +3 + chr19 37263536 37263613 chr19,37263536,37263652,-,L1MA7,LINE,L1,-24,6267,6145,37263512,37269796 -5 - chr19 37265939 37266022 chr19,37265911,37266022,-,MER96B,DNA,hAT-Tip100,-47,370,264,37265864,37266285 +5 - chr19 37266141 37266455 chr19,37266141,37266455,+,AluSx1,SINE,Alu,2,303,-9,37266140,37266464 -6 + chr19 37268747 37268984 chr19,37268623,37270188,-,SST1,Satellite,centr,-28,1535,1,37268595,37270188 +1 - chr19 37271286 37271518 chr19,37271132,37272729,-,SST1,Satellite,centr,0,1563,1,37271132,37272729 +1 - chr19 37314870 37315203 chr19,37314870,37315203,-,L1MB8,LINE,L1,0,6178,5835,37314870,37321037 +6 - chr19 37337458 37337587 chr19,37337458,37337742,-,AluSx,SINE,Alu,-16,296,1,37337442,37337742 -4 - chr19 37337721 37337742 chr19,37337458,37337742,-,AluSx,SINE,Alu,-16,296,1,37337442,37337742 -2 - chr19 37401404 37402241 chr19,37401195,37402241,-,L1MB5,LINE,L1,-8,6166,5136,37401187,37407376 +5 - chr19 37402407 37402538 chr19,37402407,37402538,+,MLT1J,LTR,ERVL-MaLR,376,506,-6,37402032,37402544 -6 + chr19 37402530 37402608 chr19,37402530,37402608,+,Charlie17,DNA,hAT-Charlie,2837,2915,-1,37399694,37402609 -6 + chr19 37403712 37403754 chr19,37403712,37403754,+,(GTCTGC)n,Simple_repeat,Simple_repeat,1,42,0,37403712,37403754 -6 + chr19 37497199 37497260 chr19,37497199,37497260,-,MIR,SINE,MIR,-108,154,93,37497091,37497352 +6 - chr19 37497455 37497592 chr19,37497455,37497653,-,LTR33B,LTR,ERVL,-301,202,9,37497154,37497661 +2 - chr19 37498024 37498099 chr19,37497923,37498099,-,L1MEg,LINE,L1,-5418,666,486,37492505,37498584 +4 - chr19 37503906 37504005 chr19,37503891,37504005,+,MIRc,SINE,MIR,43,161,-107,37503849,37504112 -5 + chr19 37504015 37504277 chr19,37504015,37504277,+,MLT1I,LTR,ERVL-MaLR,1,274,-137,37504015,37504414 -6 + chr19 37504359 37504465 chr19,37504359,37504642,-,AluSx,SINE,Alu,-16,296,1,37504343,37504642 +1 - chr19 37505579 37505749 chr19,37505213,37505749,-,MLT1F,LTR,ERVL-MaLR,-6,542,6,37505207,37505754 +5 - chr19 37505997 37506040 chr19,37505997,37506297,+,LTR16C,LTR,ERVL,148,478,-11,37505850,37506308 -1 + chr19 37506245 37506267 chr19,37505997,37506297,+,LTR16C,LTR,ERVL,148,478,-11,37505850,37506308 -1 + chr19 37545486 37546164 chr19,37545486,37546164,-,L1MB5,LINE,L1,-8,6166,5489,37545478,37551652 +6 - chr19 37546164 37546255 chr19,37546164,37546255,+,Tigger3c,DNA,TcMar-Tigger,2,92,-510,37546163,37546765 -6 + chr19 37546332 37546403 chr19,37546332,37546403,+,Tigger3b,DNA,TcMar-Tigger,484,558,-673,37545849,37547076 -6 + chr19 37546490 37546602 chr19,37546490,37546602,+,AluSz6,SINE,Alu,204,311,-1,37546287,37546603 -6 + chr19 37546604 37547201 chr19,37546604,37547201,+,Tigger3,DNA,TcMar-Tigger,2367,3027,-2,37544238,37547203 -6 + chr19 37547237 37547530 chr19,37547237,37547530,+,AluJb,SINE,Alu,1,290,-22,37547237,37547552 -6 + chr19 37547853 37548088 chr19,37547853,37548088,+,L2a,LINE,L2,3178,3425,-1,37544676,37548089 -6 + chr19 37550862 37550991 chr19,37550277,37551772,+,SST1,Satellite,centr,29,1552,-11,37550249,37551783 +1 + chr19 37551371 37551665 chr19,37550277,37551772,+,SST1,Satellite,centr,29,1552,-11,37550249,37551783 +1 + chr19 37560393 37560652 chr19,37560376,37560652,-,AluSg,SINE,Alu,-16,294,17,37560360,37560668 -2 - chr19 37567618 37567750 chr19,37567393,37567910,+,L2a,LINE,L2,2837,3365,-61,37564557,37567971 +3 + chr19 37569850 37569909 chr19,37569644,37569909,+,L2b,LINE,L2,2912,3166,-209,37566733,37570118 +2 + chr19 37585211 37585266 chr19,37585211,37585266,+,MLT1D,LTR,ERVL-MaLR,1,55,-450,37585211,37585716 +6 + chr19 37585561 37585731 chr19,37585561,37585731,+,LTR38A1,LTR,ERV1,366,543,0,37585196,37585731 +5 + chr19 37585731 37586162 chr19,37585731,37586162,+,MLT1D,LTR,ERVL-MaLR,52,500,-5,37585680,37586167 +5 + chr19 37587170 37587348 chr19,37587170,37587374,+,MER92B,LTR,ERV1,430,636,0,37586741,37587374 +5 + chr19 37728694 37728874 chr19,37728694,37728874,+,L1MCa,LINE,L1,3880,4073,-2248,37724815,37731122 -6 + chr19 37729695 37729784 chr19,37729695,37730007,+,AluSp,SINE,Alu,1,309,-4,37729695,37730011 -2 + chr19 37730483 37730527 chr19,37730225,37730527,-,AluSz,SINE,Alu,-8,304,3,37730217,37730529 +4 - chr19 37826172 37826638 chr19,37825813,37827996,+,Tigger1,DNA,TcMar-Tigger,5,2251,-167,37825809,37828163 +5 + chr19 37832041 37832160 chr19,37832041,37832524,+,MER44C,DNA,TcMar-Tigger,1,483,-250,37832041,37832774 +5 + chr19 37853002 37853121 chr19,37852857,37853142,+,AluSx,SINE,Alu,1,300,-12,37852857,37853154 -3 + chr19 37853899 37853940 chr19,37853873,37853940,-,MIR,SINE,MIR,-5,257,190,37853868,37854129 +4 - chr19 37963937 37964135 chr19,37963937,37964135,-,L1MC5,LINE,L1,0,9304,9070,37963937,37973204 -6 - chr19 37964135 37964282 chr19,37964135,37964416,+,AluJb,SINE,Alu,1,307,-5,37964135,37964421 +4 + chr19 37964614 37964790 chr19,37964482,37964797,-,AluSz,SINE,Alu,0,312,1,37964482,37964797 -5 - chr19 38109389 38109479 chr19,38109112,38109479,-,THE1B,LTR,ERVL-MaLR,0,364,1,38109112,38109479 +4 - chr19 38184376 38184477 chr19,38184186,38184477,-,AluSq2,SINE,Alu,-21,292,1,38184165,38184477 -1 - chr19 38184477 38184606 chr19,38184477,38184606,-,MIR,SINE,MIR,-111,151,3,38184366,38184608 -6 - chr19 38184606 38184777 chr19,38184606,38184777,+,L3,LINE,CR1,3146,3327,-772,38181461,38185549 +6 + chr19 38184917 38185202 chr19,38184917,38185202,+,L2b,LINE,L2,2910,3222,-165,38182008,38185367 +6 + chr19 38185270 38185360 chr19,38185270,38185360,-,MIR,SINE,MIR,-37,225,133,38185233,38185492 -6 - chr19 38185488 38185917 chr19,38185488,38185917,-,MLT1C,LTR,ERVL-MaLR,-2,465,1,38185486,38185917 -6 - chr19 38199849 38199868 chr19,38199849,38199868,+,(TA)n,Simple_repeat,Simple_repeat,1,19,0,38199849,38199868 +6 + chr19 38199869 38199945 chr19,38199869,38199945,+,L1MC5,LINE,L1,9073,9148,-156,38190797,38200101 +6 + chr19 38199946 38200071 chr19,38199946,38200071,+,AluJr,SINE,Alu,1,125,-187,38199946,38200258 +6 + chr19 38200072 38200167 chr19,38200072,38200216,-,AluSx,SINE,Alu,-7,305,157,38200065,38200372 -4 - chr19 38200835 38200934 chr19,38200646,38200947,+,AluSp,SINE,Alu,1,303,-10,38200646,38200957 +5 + chr19 38331634 38331647 chr19,38331343,38331647,+,AluSc8,SINE,Alu,1,304,-7,38331343,38331654 +1 + chr19 38331820 38332063 chr19,38331820,38332063,+,MIR,SINE,MIR,3,257,-5,38331818,38332068 +6 + chr19 38385701 38385733 chr19,38385701,38385736,+,G-rich,Low_complexity,Low_complexity,1,35,0,38385701,38385736 +4 + chr19 38398224 38398253 chr19,38398224,38398253,+,(TATT)n,Simple_repeat,Simple_repeat,1,29,0,38398224,38398253 +6 + chr19 38398253 38398534 chr19,38398253,38398534,-,AluSx3,SINE,Alu,-29,282,2,38398224,38398535 -6 - chr19 38399706 38399881 chr19,38399706,38399962,-,L2a,LINE,L2,-7,3419,3143,38399699,38403104 -5 - chr19 38535517 38535554 chr19,38535466,38535554,-,MLT1M,LTR,ERVL-MaLR,-1,671,582,38535465,38536135 +5 - chr19 38536995 38537072 chr19,38536900,38537072,+,MIR3,SINE,MIR,16,191,-17,38536885,38537089 -4 + chr19 38601577 38601638 chr19,38601577,38601638,+,MIR,SINE,MIR,1,68,-194,38601577,38601832 +6 + chr19 38601638 38601694 chr19,38601638,38601743,+,Ricksha_a,DNA,MULE-MuDR,302,406,-775,38601337,38602518 +5 + chr19 38738799 38738862 chr19,38738799,38738862,+,A-rich,Low_complexity,Low_complexity,1,67,0,38738799,38738862 +6 + chr19 38738862 38739168 chr19,38738862,38739168,+,AluJr4,SINE,Alu,14,312,0,38738849,38739168 +6 + chr19 38739168 38739474 chr19,38739168,38739474,+,AluSc8,SINE,Alu,1,307,-4,38739168,38739478 +6 + chr19 38739474 38739550 chr19,38739474,38739550,+,A-rich,Low_complexity,Low_complexity,80,157,0,38739395,38739550 +6 + chr19 38739574 38739620 chr19,38739574,38739620,+,(AATG)n,Simple_repeat,Simple_repeat,1,46,0,38739574,38739620 +6 + chr19 38739621 38739863 chr19,38739621,38739882,+,MLT1K,LTR,ERVL-MaLR,205,483,-112,38739417,38739994 +5 + chr19 38820166 38820358 chr19,38820053,38820358,-,AluY,SINE,Alu,0,311,2,38820053,38820359 -1 - chr19 38820408 38820492 chr19,38820408,38820631,+,MIR,SINE,MIR,12,251,-11,38820397,38820642 +4 + chr19 38822985 38823223 chr19,38821336,38823305,+,LTR12C,LTR,ERV1,2,1579,0,38821335,38823305 +5 + chr19 38844729 38844934 chr19,38844712,38845007,-,AluSx1,SINE,Alu,-13,299,1,38844699,38845007 +5 - chr19 38845213 38845403 chr19,38845137,38845403,+,AluSq,SINE,Alu,2,313,0,38845136,38845403 -4 + chr19 38870159 38870169 chr19,38870109,38870169,+,(GCC)n,Simple_repeat,Simple_repeat,1,61,0,38870109,38870169 +1 + chr19 38873551 38873763 chr19,38873525,38873820,-,AluSz6,SINE,Alu,-10,302,6,38873515,38873825 -5 - chr19 38935336 38935673 chr19,38935163,38935673,-,MER9a3,LTR,ERVK,0,512,1,38935163,38935673 +5 - chr19 38935673 38937299 chr19,38935673,38937299,-,HERVK9-int,LTR,ERVK,0,6021,4399,38935673,38941697 +6 - chr19 38937289 38938632 chr19,38937289,38941326,-,HERVK9-int,LTR,ERVK,-1975,4046,1,38935314,38941326 +1 - chr19 39030639 39030907 chr19,39030611,39030907,-,AluSz,SINE,Alu,-5,307,1,39030606,39030907 -2 - chr19 39134882 39134904 chr19,39134601,39134904,-,AluSx,SINE,Alu,-14,298,1,39134587,39134904 +5 - chr19 39134904 39135176 chr19,39134904,39135176,-,L1ME3B,LINE,L1,-363,5799,5473,39134541,39140648 +6 - chr19 39136422 39136463 chr19,39136162,39136493,+,L2b,LINE,L2,2683,3104,-271,39133480,39136764 -1 + chr19 39315278 39315317 chr19,39315278,39315317,+,G-rich,Low_complexity,Low_complexity,1,41,0,39315278,39315317 -6 + chr19 39316082 39316136 chr19,39316017,39316255,+,MIR,SINE,MIR,15,261,-1,39316003,39316256 -3 + chr19 39533116 39533236 chr19,39533096,39533392,-,AluJb,SINE,Alu,-14,298,1,39533082,39533392 -3 - chr19 39685369 39685418 chr19,39685369,39685685,-,MLT1H1,LTR,ERVL-MaLR,-199,392,66,39685170,39685750 -4 - chr19 39812972 39813181 chr19,39812872,39813181,-,MER33,DNA,hAT-Charlie,0,324,1,39812872,39813181 +5 - chr19 39813202 39813310 chr19,39813202,39813310,+,MER5A1,DNA,hAT-Charlie,34,159,-7,39813169,39813317 -6 + chr19 39813414 39813555 chr19,39813414,39813560,-,L2b,LINE,L2,0,3426,3258,39813414,39816817 +1 - chr19 40020936 40021041 chr19,40020936,40021140,-,L1ME3Cz,LINE,L1,-460,537,321,40020476,40021460 -5 - chr19 40091721 40091834 chr19,40091721,40091834,+,L1MEf,LINE,L1,2091,2206,-3940,40089631,40095774 +6 + chr19 40091834 40092243 chr19,40091834,40092243,+,L1PA5,LINE,L1,5739,6148,-6,40086096,40092249 +6 + chr19 40092243 40092861 chr19,40092243,40092861,+,L1MEf,LINE,L1,2207,2827,-3319,40090037,40096180 +6 + chr19 40093043 40093833 chr19,40093043,40093833,-,BLACKJACK,DNA,hAT-Blackjack,-223,2746,1939,40092820,40095771 -6 - chr19 40093843 40093889 chr19,40093843,40093889,-,L1PREC2,LINE,L1,-2026,4120,4075,40091817,40097963 -6 - chr19 40093893 40094406 chr19,40093893,40094425,+,L1MEf,LINE,L1,2868,3407,-2739,40091026,40097164 +5 + chr19 40274160 40274291 chr19,40273797,40274291,+,L2b,LINE,L2,2778,3339,-36,40271020,40274327 -4 + chr19 40274369 40274899 chr19,40274369,40274899,-,L2a,LINE,L2,0,3426,2828,40274369,40277726 +6 - chr19 40275061 40275174 chr19,40275061,40275174,-,MIRc,SINE,MIR,-129,139,18,40274932,40275191 +6 - chr19 40275409 40275479 chr19,40275409,40275610,-,MIRb,SINE,MIR,-8,254,14,40275401,40275623 +1 - chr19 40356110 40356362 chr19,40356110,40356362,-,L2b,LINE,L2,-339,3080,2810,40355771,40359171 -6 - chr19 40356506 40356594 chr19,40356506,40356594,-,L2b,LINE,L2,-182,3193,3102,40356324,40359695 -6 - chr19 40356762 40356905 chr19,40356762,40356905,-,L2b,LINE,L2,-447,2972,2827,40356315,40359731 -6 - chr19 40357253 40357390 chr19,40357253,40357390,-,FLAM_C,SINE,Alu,-11,132,1,40357242,40357390 -6 - chr19 40357690 40357752 chr19,40357690,40357752,-,L2c,LINE,L2,-16,3371,3310,40357674,40361061 -6 - chr19 40357829 40358040 chr19,40357829,40358040,-,MIRb,SINE,MIR,-6,256,13,40357823,40358052 -6 - chr19 40358088 40358259 chr19,40358088,40358259,-,AluJb,SINE,Alu,-14,298,144,40358074,40358402 -6 - chr19 40358259 40358551 chr19,40358259,40358551,-,AluSq2,SINE,Alu,-6,307,1,40358253,40358551 -6 - chr19 40358551 40358694 chr19,40358551,40358694,-,AluJb,SINE,Alu,-169,143,1,40358382,40358694 -6 - chr19 40358711 40358818 chr19,40358711,40358818,-,MIRb,SINE,MIR,-122,146,35,40358589,40358852 -6 - chr19 40359038 40359348 chr19,40359038,40359348,-,AluSp,SINE,Alu,-1,312,1,40359037,40359348 -6 - chr19 40359791 40359859 chr19,40359791,40359859,-,MIR,SINE,MIR,-11,251,186,40359780,40360044 -6 - chr19 40359869 40359998 chr19,40359869,40359998,-,AluJr,SINE,Alu,-185,127,1,40359684,40359998 -6 - chr19 40360035 40360387 chr19,40360035,40360387,+,L2a,LINE,L2,2429,2803,-616,40357607,40361003 +6 + chr19 40360395 40360464 chr19,40360395,40360464,-,MLT1D,LTR,ERVL-MaLR,0,505,446,40360395,40360909 -6 - chr19 40360464 40360597 chr19,40360464,40360597,+,FLAM_C,SINE,Alu,1,134,-9,40360464,40360606 +6 + chr19 40426325 40426521 chr19,40426325,40426521,+,MIRb,SINE,MIR,54,267,-1,40426272,40426522 +6 + chr19 40426516 40426702 chr19,40426516,40426717,+,MIR,SINE,MIR,11,215,-47,40426506,40426764 +5 + chr19 40831278 40831536 chr19,40831278,40831536,-,L1ME4b,LINE,L1,-347,545,271,40830931,40831806 +6 - chr19 40837086 40837128 chr19,40836830,40837128,-,AluJb,SINE,Alu,-10,302,9,40836820,40837136 +4 - chr19 40837173 40837210 chr19,40837173,40837431,+,L1M5,LINE,L1,4385,4651,-1495,40832789,40838926 -1 + chr19 40840159 40840431 chr19,40840028,40840431,+,MSTA,LTR,ERVL-MaLR,1,428,0,40840028,40840431 +1 + chr19 40840431 40840442 chr19,40840431,40840442,-,L1ME3A,LINE,L1,-778,5395,5395,40839653,40845836 -6 - chr19 40840442 40840739 chr19,40840442,40840739,-,AluSx1,SINE,Alu,-13,299,6,40840429,40840744 -6 - chr19 40840740 40840780 chr19,40840740,40840780,+,MSTA,LTR,ERVL-MaLR,388,427,-1,40840353,40840781 +6 + chr19 40840780 40841649 chr19,40840780,40841649,-,L1ME3A,LINE,L1,-778,5394,4532,40840002,40846180 -6 - chr19 40841650 40841925 chr19,40841650,40841925,-,AluSz,SINE,Alu,-37,275,1,40841613,40841925 -6 - chr19 40841926 40842039 chr19,40841926,40842747,-,L1MC,LINE,L1,-543,5801,4965,40841383,40847711 -5 - chr19 40946347 40946545 chr19,40946343,40946648,-,AluY,SINE,Alu,-4,307,4,40946339,40946651 -1 - chr19 40947142 40947383 chr19,40947142,40947383,+,GA-rich,Low_complexity,Low_complexity,1,255,0,40947142,40947383 +6 + chr19 41399634 41399660 chr19,41399634,41399660,+,(CTTTT)n,Simple_repeat,Simple_repeat,1,25,0,41399634,41399660 +6 + chr19 41399660 41399695 chr19,41399660,41399695,+,(TCCTC)n,Simple_repeat,Simple_repeat,1,35,0,41399660,41399695 +6 + chr19 41399695 41399765 chr19,41399695,41399765,+,(CTTTT)n,Simple_repeat,Simple_repeat,1,68,0,41399695,41399765 +6 + chr19 41399774 41399880 chr19,41399774,41400068,-,AluSz,SINE,Alu,-1,311,1,41399773,41400068 -4 - chr19 41400335 41400365 chr19,41400233,41400538,-,AluSx,SINE,Alu,-6,306,2,41400227,41400539 -5 - chr19 41454169 41454486 chr19,41454089,41454486,-,LTR47A,LTR,ERVL,0,443,1,41454089,41454486 +5 - chr19 41454486 41454633 chr19,41454486,41454633,-,ERVL47-int,LTR,ERVL,0,5246,5083,41454486,41459715 +5 - chr19 41454679 41455104 chr19,41454679,41455104,-,LTR49-int,LTR,ERV1,-610,5721,5481,41454069,41460584 +6 - chr19 41455104 41455385 chr19,41455104,41455385,-,AluSx,SINE,Alu,-27,285,1,41455077,41455385 +5 - chr19 41455385 41455558 chr19,41455385,41455558,-,LTR49-int,LTR,ERV1,-851,5480,5306,41454534,41460863 +6 - chr19 41455558 41456224 chr19,41455558,41456224,-,LTR8B,LTR,ERV1,0,820,1,41455558,41456224 +5 - chr19 41456224 41456487 chr19,41456224,41456813,-,LTR49-int,LTR,ERV1,-1360,5398,4835,41454864,41461647 +5 - chr19 41456591 41456813 chr19,41456224,41456813,-,LTR49-int,LTR,ERV1,-1360,5398,4835,41454864,41461647 +5 - chr19 41456813 41456923 chr19,41456813,41457087,+,LTR39,LTR,ERV1,2,278,-505,41456812,41457592 -2 + chr19 41474466 41474539 chr19,41474276,41474568,+,AluSx1,SINE,Alu,17,308,-4,41474260,41474572 -3 + chr19 41494684 41494989 chr19,41494684,41494989,+,AluJb,SINE,Alu,1,307,-5,41494684,41494994 -6 + chr19 41495000 41495420 chr19,41495000,41495420,-,ERV3-16A3_I-int,LTR,ERVL,-2670,2556,2144,41492330,41497563 +6 - chr19 41535183 41535457 chr19,41534903,41535457,+,L1PB,LINE,L1,4770,5302,-844,41530134,41536301 +1 + chr19 41536366 41536904 chr19,41536366,41537235,+,LTR1A2,LTR,ERV1,1,837,0,41536366,41537235 +5 + chr19 41550472 41550488 chr19,41550472,41550488,+,(AAT)n,Simple_repeat,Simple_repeat,1,16,0,41550472,41550488 +6 + chr19 41550488 41550705 chr19,41550488,41550792,+,AluSx,SINE,Alu,1,303,-9,41550488,41550801 +5 + chr19 41551180 41551457 chr19,41551148,41551457,-,AluSq2,SINE,Alu,-2,311,1,41551146,41551457 -2 - chr19 41551918 41552274 chr19,41551918,41552582,-,PABL_A,LTR,ERV1,0,660,1,41551918,41552582 +1 - chr19 41553706 41553746 chr19,41553403,41554973,-,PABL_A-int,LTR,ERV1,-527,4488,2926,41552876,41557898 -3 - chr19 41554951 41554973 chr19,41553403,41554973,-,PABL_A-int,LTR,ERV1,-527,4488,2926,41552876,41557898 -2 - chr19 41555302 41555322 chr19,41555302,41555322,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,41555302,41555322 +6 + chr19 41555323 41555462 chr19,41555323,41556298,-,LTR49-int,LTR,ERV1,-3688,2643,751,41551635,41557048 -5 - chr19 41757898 41757960 chr19,41757816,41757960,-,MIRb,SINE,MIR,-83,185,34,41757733,41757993 +5 - chr19 41786511 41786583 chr19,41786401,41786583,-,L3,LINE,CR1,-108,3991,3777,41786293,41790359 +4 - chr19 41833686 41833827 chr19,41833646,41833827,+,L1ME3F,LINE,L1,4329,4509,-1637,41829318,41835464 -5 + chr19 41833827 41834129 chr19,41833827,41834129,+,AluSp,SINE,Alu,1,304,-9,41833827,41834138 -6 + chr19 41834172 41834804 chr19,41834172,41834804,+,L1ME3F,LINE,L1,5255,5894,-349,41828918,41835153 -6 + chr19 41834804 41835027 chr19,41834804,41835027,+,AluJr,SINE,Alu,87,308,-4,41834718,41835031 -6 + chr19 41835027 41835346 chr19,41835027,41835346,+,L1ME3F,LINE,L1,5885,6222,-21,41829143,41835367 -6 + chr19 41835822 41835950 chr19,41835822,41835954,+,MIRb,SINE,MIR,79,224,-44,41835744,41835998 -1 + chr19 42132905 42132975 chr19,42132866,42132975,-,MIR,SINE,MIR,-92,170,64,42132774,42133038 -2 - chr19 42136672 42136704 chr19,42136507,42136704,-,MIRb,SINE,MIR,-63,205,4,42136444,42136707 -2 - chr19 42136907 42137089 chr19,42136907,42137089,-,L2b,LINE,L2,-5,3421,3233,42136902,42140321 -5 - chr19 42137055 42137099 chr19,42137055,42137173,-,L2b,LINE,L2,0,3426,3285,42137055,42140457 -5 - chr19 42155906 42155935 chr19,42155906,42155935,+,(AAAGG)n,Simple_repeat,Simple_repeat,1,30,0,42155906,42155935 +6 + chr19 42157034 42157062 chr19,42157034,42157062,+,GA-rich,Low_complexity,Low_complexity,1,28,0,42157034,42157062 +6 + chr19 42157205 42157508 chr19,42157205,42157508,+,L2b,LINE,L2,3067,3375,0,42154139,42157508 +6 + chr19 42243679 42243737 chr19,42243679,42243737,+,X9_LINE,LINE,L1,286,344,-592,42243394,42244329 +6 + chr19 42243743 42244041 chr19,42243743,42244041,+,AluSq2,SINE,Alu,1,296,-17,42243743,42244058 +6 + chr19 42244071 42244384 chr19,42244071,42244384,-,AluJo,SINE,Alu,-15,297,1,42244056,42244384 -6 - chr19 42408358 42408396 chr19,42408358,42408396,+,(GACAGG)n,Simple_repeat,Simple_repeat,1,39,0,42408358,42408396 +6 + chr19 42408411 42408452 chr19,42408411,42408605,-,L2b,LINE,L2,-3,3423,3193,42408408,42411797 -5 - chr19 42425187 42425204 chr19,42425187,42425298,+,L2b,LINE,L2,3258,3374,-1,42421930,42425299 +4 + chr19 42525720 42525869 chr19,42525720,42525889,+,MIR,SINE,MIR,13,187,-75,42525708,42525964 +5 + chr19 42651087 42651240 chr19,42650918,42651240,+,MLT1A,LTR,ERVL-MaLR,70,362,-12,42650849,42651252 +2 + chr19 42651534 42651919 chr19,42651534,42651919,-,MER54B,LTR,ERVL,-483,418,20,42651051,42651938 -6 - chr19 42821863 42821913 chr19,42821352,42822126,+,L1MB3,LINE,L1,5363,6130,-53,42815990,42822179 +1 + chr19 42823233 42823715 chr19,42823233,42823715,-,MLT1N2,LTR,ERVL-MaLR,-54,508,17,42823179,42823731 -6 - chr19 42825053 42825107 chr19,42825053,42825107,+,(AAGTGG)n,Simple_repeat,Simple_repeat,1,54,0,42825053,42825107 +6 + chr19 42826433 42826822 chr19,42826427,42826822,+,ERVL-B4-int,LTR,ERVL,3189,3630,-2024,42823239,42828846 +2 + chr19 42826828 42826878 chr19,42826828,42826924,+,MLT1B,LTR,ERVL-MaLR,293,390,0,42826536,42826924 +5 + chr19 43153320 43153374 chr19,43153320,43153374,+,(AAGTGG)n,Simple_repeat,Simple_repeat,1,56,0,43153320,43153374 +6 + chr19 43155172 43155205 chr19,43155109,43155205,+,MLT1B,LTR,ERVL-MaLR,293,390,0,43154817,43155205 +2 + chr19 43160850 43160862 chr19,43159956,43160885,-,L1PA7,LINE,L1,0,6154,5232,43159956,43166116 -5 - chr19 43329295 43329384 chr19,43328950,43329384,-,LTR7Y,LTR,ERV1,0,472,1,43328950,43329384 +5 - chr19 43329385 43329508 chr19,43329385,43330434,-,THE1D-int,LTR,ERVL-MaLR,-33,1598,517,43329352,43330950 +2 - chr19 43360772 43360843 chr19,43360772,43360953,-,L2a,LINE,L2,-128,3298,3109,43360644,43364061 +2 - chr19 43368829 43368959 chr19,43368589,43368959,+,L1M3,LINE,L1,5363,5747,-436,43363227,43369395 -4 + chr19 43555233 43555494 chr19,43555233,43555551,+,LTR50,LTR,ERVL,1,384,-411,43555233,43555962 +5 + chr19 43574638 43574748 chr19,43574607,43574748,-,MIR3,SINE,MIR,-92,176,39,43574515,43574786 -1 - chr19 43574747 43574882 chr19,43574747,43574882,-,MIR3,SINE,MIR,-87,181,32,43574660,43574913 -6 - chr19 43794309 43794353 chr19,43794091,43794353,+,L1ME3,LINE,L1,5879,6160,-2,43788213,43794355 -5 + chr19 43794356 43794427 chr19,43794356,43794427,+,(TA)n,Simple_repeat,Simple_repeat,1,73,0,43794356,43794427 -6 + chr19 43794399 43794444 chr19,43794399,43794444,+,(AC)n,Simple_repeat,Simple_repeat,1,46,0,43794399,43794444 -6 + chr19 43794485 43794617 chr19,43794485,43794772,-,AluSx1,SINE,Alu,-11,301,7,43794474,43794778 +2 - chr19 43795412 43795491 chr19,43795205,43795491,+,AluJo,SINE,Alu,1,289,-23,43795205,43795514 -4 + chr19 43795529 43795655 chr19,43795529,43795655,+,L2a,LINE,L2,3299,3425,-1,43792231,43795656 -6 + chr19 43891233 43892666 chr19,43890537,43892666,+,L1MEg,LINE,L1,2864,5091,-1055,43887674,43893721 +5 + chr19 43891804 43892666 chr19,43890537,43892666,+,L1MEg,LINE,L1,2864,5091,-1055,43887674,43893721 -5 + chr19 43892677 43892960 chr19,43892677,43892960,-,L1MC4a,LINE,L1,-2,7880,7567,43892675,43900526 -6 - chr19 43892677 43892960 chr19,43892677,43892960,-,L1MC4a,LINE,L1,-2,7880,7567,43892675,43900526 +6 - chr19 43892962 43893336 chr19,43892962,43893336,-,MLT1E1A,LTR,ERVL-MaLR,0,680,292,43892962,43893627 -6 - chr19 43892962 43893140 chr19,43892962,43893336,-,MLT1E1A,LTR,ERVL-MaLR,0,680,292,43892962,43893627 +2 - chr19 43893405 43893538 chr19,43893405,43893538,-,L1PREC2,LINE,L1,-691,5621,5493,43892714,43899030 -6 - chr19 43893538 43893836 chr19,43893538,43893836,-,AluYc,SINE,Alu,-3,296,1,43893535,43893836 -6 - chr19 43893836 43894030 chr19,43893836,43894030,-,L1PREC2,LINE,L1,-820,5492,5286,43893016,43899315 -6 - chr19 43894040 43894572 chr19,43894040,43894572,-,L1PA8,LINE,L1,-8,6164,5630,43894032,43900201 -6 - chr19 43894572 43894609 chr19,43894572,43894609,+,L1PA8,LINE,L1,5585,5621,-551,43888988,43895160 +6 + chr19 43894609 43894790 chr19,43894609,43894790,-,MLT1E1A,LTR,ERVL-MaLR,-398,162,1,43894211,43894790 -6 - chr19 43894796 43895148 chr19,43894796,43895148,-,L1MC4a,LINE,L1,-321,7561,7204,43894475,43902351 -6 - chr19 43895148 43895365 chr19,43895148,43895365,+,LTR42,LTR,ERVL,279,495,0,43894870,43895365 +6 + chr19 43895366 43895411 chr19,43895366,43895770,-,L1M5,LINE,L1,-703,5741,5254,43894663,43901023 -5 - chr19 43900919 43900939 chr19,43900919,43900939,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,43900919,43900939 -6 + chr19 43901551 43901583 chr19,43901551,43901583,+,(CA)n,Simple_repeat,Simple_repeat,1,32,0,43901551,43901583 -6 + chr19 43925142 43925254 chr19,43924965,43925319,+,MLT1A,LTR,ERVL-MaLR,1,374,0,43924965,43925319 +3 + chr19 43997453 43997606 chr19,43997453,43997606,-,L1MA5,LINE,L1,-2,6298,6142,43997451,44003747 +6 - chr19 43997620 43998440 chr19,43997620,43998440,+,LTR25,LTR,ERV1,27,844,0,43997594,43998440 -6 + chr19 43998456 43998947 chr19,43998456,43998947,-,L1MA5,LINE,L1,-187,6113,5604,43998269,44004550 +6 - chr19 44002276 44002540 chr19,44002276,44002540,+,L2,LINE,L2,459,778,-2641,44001818,44005181 -6 + chr19 44023604 44023899 chr19,44022304,44024246,+,L1M4c,LINE,L1,2785,4726,-1650,44019520,44025896 -5 + chr19 44024898 44024929 chr19,44024719,44024929,+,L2a,LINE,L2,888,1107,-2312,44023832,44027241 -4 + chr19 44094703 44094863 chr19,44094703,44094863,+,MIR,SINE,MIR,69,236,-26,44094635,44094889 -6 + chr19 44095268 44095463 chr19,44095268,44095463,-,MIR,SINE,MIR,-50,218,4,44095218,44095466 +6 - chr19 44098865 44098878 chr19,44098587,44098878,-,AluSp,SINE,Alu,-17,296,1,44098570,44098878 +4 - chr19 44099434 44099565 chr19,44099434,44099565,+,L1ME3G,LINE,L1,46,177,-747,44099389,44100312 -6 + chr19 44099571 44099709 chr19,44099571,44099709,+,FLAM_C,SINE,Alu,1,133,0,44099571,44099709 -6 + chr19 44105515 44106192 chr19,44105515,44106192,-,L1PB3,LINE,L1,-3,6151,5477,44105512,44111668 +6 - chr19 44111951 44112239 chr19,44111864,44112444,-,LTR9,LTR,ERV1,0,612,3,44111864,44112446 +5 - chr19 44112822 44112840 chr19,44112641,44112840,+,L1MC,LINE,L1,5265,5472,-2410,44107377,44115250 -4 + chr19 44246478 44247023 chr19,44246304,44247023,-,L1ME1,LINE,L1,-3053,3093,2327,44243251,44249349 +5 - chr19 44247023 44247344 chr19,44247023,44247344,-,AluYm1,SINE,Alu,0,311,1,44247023,44247344 +6 - chr19 44247344 44247376 chr19,44247344,44247376,-,L1ME1,LINE,L1,-3820,2326,2298,44243524,44249673 +6 - chr19 44247365 44247413 chr19,44247365,44247413,-,L1MEc,LINE,L1,-3794,2525,2478,44243571,44249890 +6 - chr19 44247411 44247603 chr19,44247411,44247603,-,L1MEc,LINE,L1,-4014,2386,2161,44243397,44249763 +6 - chr19 44247603 44247830 chr19,44247603,44247830,-,Tigger4a,DNA,TcMar-Tigger,0,236,1,44247603,44247830 +6 - chr19 44247830 44247931 chr19,44247830,44247931,-,L1MEc,LINE,L1,-4240,2160,2062,44243590,44249992 +6 - chr19 44247931 44247978 chr19,44247931,44247978,-,L1PB1,LINE,L1,-3,6148,6101,44247928,44254078 +6 - chr19 44247978 44248374 chr19,44247978,44248559,-,L1MEc,LINE,L1,-4339,2061,1391,44243639,44249949 +1 - chr19 44474435 44474464 chr19,44474435,44474464,+,(TTATTT)n,Simple_repeat,Simple_repeat,1,31,0,44474435,44474464 -6 + chr19 44474683 44474774 chr19,44474683,44474774,+,MER70C,LTR,ERVL,5,97,-434,44474679,44475208 -6 + chr19 44536331 44536480 chr19,44536331,44536483,-,MIR3,SINE,MIR,-41,167,18,44536290,44536500 +2 - chr19 44536591 44536606 chr19,44536572,44536606,+,(AC)n,Simple_repeat,Simple_repeat,1,35,0,44536572,44536606 -4 + chr19 44632199 44632619 chr19,44631994,44632881,-,HERVK9-int,LTR,ERVK,-550,5471,4583,44631444,44637463 +5 - chr19 44664131 44664142 chr19,44664047,44664142,+,L1MB4,LINE,L1,6080,6174,-6,44657968,44664148 +1 + chr19 44664184 44664223 chr19,44664184,44664223,+,(TTTA)n,Simple_repeat,Simple_repeat,1,39,0,44664184,44664223 +6 + chr19 44664231 44664508 chr19,44664231,44664508,-,AluJo,SINE,Alu,-35,277,5,44664196,44664512 -6 - chr19 44664511 44664714 chr19,44664511,44664714,-,L1ME4b,LINE,L1,-314,578,430,44664197,44665143 -6 - chr19 44664714 44664849 chr19,44664714,44664849,-,FLAM_C,SINE,Alu,-10,133,1,44664704,44664849 -6 - chr19 44664849 44665026 chr19,44664849,44665026,-,L1ME4b,LINE,L1,-463,429,262,44664386,44665287 -6 - chr19 44665098 44665226 chr19,44665098,44665226,-,MamRep488,DNA,hAT-Tip100,-92,127,1,44665006,44665226 -6 - chr19 44665364 44665660 chr19,44665364,44665660,+,AluSz,SINE,Alu,1,308,-4,44665364,44665664 +6 + chr19 44665720 44666012 chr19,44665720,44666012,-,MLT1L,LTR,ERVL-MaLR,-223,387,110,44665497,44666121 -6 - chr19 44699084 44699177 chr19,44699030,44699223,+,L2a,LINE,L2,3186,3426,0,44695845,44699223 -3 + chr19 44715564 44715868 chr19,44715508,44715868,-,MSTA,LTR,ERVL-MaLR,0,428,1,44715508,44715868 +5 - chr19 44715868 44716004 chr19,44715868,44716004,-,MIR,SINE,MIR,-42,220,79,44715826,44716082 +6 - chr19 44716053 44716083 chr19,44716053,44716250,+,MIR,SINE,MIR,2,250,-12,44716052,44716262 -5 + chr19 44716108 44716180 chr19,44716053,44716250,+,MIR,SINE,MIR,2,250,-12,44716052,44716262 -5 + chr19 44718450 44718503 chr19,44718409,44718503,-,MIRb,SINE,MIR,-127,141,44,44718282,44718546 +4 - chr19 44718492 44718563 chr19,44718492,44718563,-,MIR3,SINE,MIR,-88,120,51,44718404,44718613 +6 - chr19 44882027 44882088 chr19,44881692,44882088,+,L2a,LINE,L2,3028,3426,0,44878665,44882088 -5 + chr19 44909521 44909803 chr19,44909521,44909803,-,AluSz,SINE,Alu,-17,295,1,44909504,44909803 -6 - chr19 44909811 44910028 chr19,44909811,44910028,-,AluJo,SINE,Alu,-16,296,78,44909795,44910105 -6 - chr19 44910029 44910238 chr19,44910029,44910238,-,AluJo,SINE,Alu,-101,211,1,44909928,44910238 -6 - chr19 44910657 44910986 chr19,44910657,44910986,-,AluSz,SINE,Alu,0,312,3,44910657,44910988 -6 - chr19 44911406 44911571 chr19,44911406,44911571,+,MIRc,SINE,MIR,1,173,-95,44911406,44911666 +6 + chr19 44911609 44911765 chr19,44911609,44911765,-,AluJo,SINE,Alu,-15,297,135,44911594,44911899 -6 - chr19 44911765 44912060 chr19,44911765,44912060,-,AluSx,SINE,Alu,-17,295,1,44911748,44912060 -6 - chr19 44912060 44912193 chr19,44912060,44912193,-,AluJo,SINE,Alu,-178,134,5,44911882,44912197 -6 - chr19 44912390 44912697 chr19,44912390,44912697,-,AluSz,SINE,Alu,-8,304,1,44912382,44912697 -6 - chr19 44913317 44913608 chr19,44913317,44913608,-,AluJo,SINE,Alu,-18,294,2,44913299,44913609 -6 - chr19 44913971 44914427 chr19,44913971,44914427,+,LTR2,LTR,ERV1,1,463,0,44913971,44914427 +6 + chr19 44914789 44914834 chr19,44914789,44914834,+,G-rich,Low_complexity,Low_complexity,1,46,0,44914789,44914834 +6 + chr19 44950044 44950200 chr19,44949974,44950324,-,MER51B,LTR,ERV1,0,377,1,44949974,44950324 +5 - chr19 44950936 44951026 chr19,44950766,44951061,+,AluSx,SINE,Alu,1,310,-2,44950766,44951063 -3 + chr19 44953923 44954007 chr19,44953923,44954110,-,MIRb,SINE,MIR,0,268,101,44953923,44954210 +1 - chr19 45076819 45076876 chr19,45076819,45077292,-,L2a,LINE,L2,-4,3422,2820,45076815,45080111 +2 - chr19 45085390 45085565 chr19,45085390,45085565,+,MER20,DNA,hAT-Charlie,55,219,0,45085336,45085565 -6 + chr19 45135993 45136082 chr19,45135774,45136082,-,AluSq2,SINE,Alu,-5,308,1,45135769,45136082 +5 - chr19 45136171 45136350 chr19,45136171,45136437,-,Charlie4a,DNA,hAT-Charlie,-196,312,36,45135975,45136472 +2 - chr19 45136864 45136921 chr19,45136774,45136921,+,MIR3,SINE,MIR,23,174,-34,45136752,45136955 -4 + chr19 45149750 45149912 chr19,45149738,45149912,-,MLT1J2,LTR,ERVL-MaLR,-43,405,202,45149695,45150113 +5 - chr19 45150098 45150308 chr19,45150098,45150308,-,AluSx3,SINE,Alu,-17,294,82,45150081,45150389 +6 - chr19 45150557 45150605 chr19,45150557,45150826,-,MLT1K,LTR,ERVL-MaLR,-209,386,97,45150348,45150922 +1 - chr19 45187680 45187739 chr19,45187680,45187739,-,MER91B,DNA,hAT-Tip100,-47,143,80,45187633,45187818 -6 - chr19 45202406 45202507 chr19,45202376,45203262,-,L1M1,LINE,L1,-6171,1394,505,45196205,45203766 -3 - chr19 45216725 45216830 chr19,45216725,45216830,+,L1MD1,LINE,L1,6123,6222,-20,45210603,45216850 +6 + chr19 45245341 45245370 chr19,45245311,45245387,+,(CCCCTGTC)n,Simple_repeat,Simple_repeat,1,84,0,45245311,45245387 -1 + chr19 45714517 45714618 chr19,45714517,45714618,+,AluJo,SINE,Alu,199,298,-14,45714319,45714632 -6 + chr19 45714618 45714922 chr19,45714618,45714922,+,AluJb,SINE,Alu,2,303,-9,45714617,45714931 -6 + chr19 45714944 45715080 chr19,45714944,45715080,-,MIR1_Amn,SINE,MIR,-70,160,25,45714874,45715104 +6 - chr19 45715288 45715488 chr19,45715288,45715488,+,MER58A,DNA,hAT-Charlie,2,224,0,45715287,45715488 -6 + chr19 45715524 45715835 chr19,45715524,45715835,+,AluSq2,SINE,Alu,1,312,-1,45715524,45715836 -6 + chr19 45716051 45716274 chr19,45716051,45716274,+,Tigger4a,DNA,TcMar-Tigger,1,236,0,45716051,45716274 -6 + chr19 45716758 45716960 chr19,45716758,45716960,-,MIR,SINE,MIR,-11,251,8,45716747,45716967 +6 - chr19 45768865 45768889 chr19,45768865,45768889,+,(CCTC)n,Simple_repeat,Simple_repeat,1,24,0,45768865,45768889 +6 + chr19 45771725 45771771 chr19,45771725,45771771,+,(GCCCCG)n,Simple_repeat,Simple_repeat,1,46,0,45771725,45771771 +6 + chr19 45771865 45771883 chr19,45771865,45771908,+,(CCTCAG)n,Simple_repeat,Simple_repeat,1,44,0,45771865,45771908 +5 + chr19 45772306 45772432 chr19,45772284,45772432,+,L2b,LINE,L2,2979,3145,-281,45769306,45772713 +2 + chr19 45830346 45830500 chr19,45830346,45830500,-,L2a,LINE,L2,-203,3223,3058,45830143,45833557 -6 - chr19 45830607 45830786 chr19,45830607,45830918,+,AluY,SINE,Alu,1,311,0,45830607,45830918 +4 + chr19 45831096 45831108 chr19,45831096,45831166,-,MIR,SINE,MIR,-68,194,125,45831028,45831290 -5 - chr19 46028147 46028291 chr19,46028122,46028291,-,AluJo,SINE,Alu,-10,302,137,46028112,46028427 -2 - chr19 46030120 46030161 chr19,46030107,46030405,-,AluSx,SINE,Alu,-21,291,1,46030086,46030405 -5 - chr19 46101122 46101137 chr19,46100824,46101888,-,L1PA10,LINE,L1,-5125,1358,248,46095699,46102135 -1 - chr19 46163893 46164216 chr19,46161437,46164532,-,L1PA12,LINE,L1,-3609,4532,1357,46157828,46165888 +5 - chr19 46164578 46164651 chr19,46164532,46165959,+,HERVL32-int,LTR,ERVL,2117,3571,-2476,46162416,46168435 -3 + chr19 46173535 46173771 chr19,46173379,46173779,-,MSTB,LTR,ERVL-MaLR,-2,424,1,46173377,46173779 +5 - chr19 46180605 46180647 chr19,46180519,46181084,-,MLT2B3,LTR,ERVL,0,554,1,46180519,46181084 +1 - chr19 46181235 46181340 chr19,46181224,46181874,+,LTR8B,LTR,ERV1,92,820,0,46181133,46181874 +3 + chr19 46189166 46189229 chr19,46188939,46189933,-,LTR13,LTR,ERVK,0,1007,1,46188939,46189933 +5 - chr19 46189636 46189933 chr19,46188939,46189933,-,LTR13,LTR,ERVK,0,1007,1,46188939,46189933 +5 - chr19 46190072 46190414 chr19,46190072,46190637,-,MLT1H,LTR,ERVL-MaLR,0,549,1,46190072,46190637 +2 - chr19 46195059 46195158 chr19,46195019,46195308,-,AluSz,SINE,Alu,-16,296,5,46195003,46195312 -3 - chr19 46198100 46198116 chr19,46198086,46198116,+,(CCTC)n,Simple_repeat,Simple_repeat,1,30,0,46198086,46198116 -5 + chr19 46198116 46198413 chr19,46198116,46198413,-,AluJr,SINE,Alu,-15,297,1,46198101,46198413 +5 - chr19 46200787 46200820 chr19,46200537,46200820,-,AluJr4,SINE,Alu,-34,278,1,46200503,46200820 +5 - chr19 46202535 46202734 chr19,46201848,46202975,-,HERVH-int,LTR,ERV1,-6251,1462,1,46195597,46202975 +1 - chr19 46202840 46202975 chr19,46201848,46202975,-,HERVH-int,LTR,ERV1,-6251,1462,1,46195597,46202975 +1 - chr19 46202975 46203083 chr19,46202975,46203386,-,LTR7C,LTR,ERV1,0,471,1,46202975,46203386 +1 - chr19 46204805 46204920 chr19,46204770,46205085,-,AluSx1,SINE,Alu,-3,309,2,46204767,46205086 -3 - chr19 46206919 46207107 chr19,46206919,46207107,+,L2b,LINE,L2,2714,2907,-512,46204206,46207619 +6 + chr19 46207108 46207387 chr19,46207108,46207387,-,MER21C,LTR,ERVL,-402,536,229,46206706,46207615 -6 - chr19 46207387 46207681 chr19,46207387,46207681,-,AluSx1,SINE,Alu,-18,294,1,46207369,46207681 -6 - chr19 46207681 46207835 chr19,46207681,46207835,-,MER21C,LTR,ERVL,-710,228,1,46206971,46207835 -6 - chr19 46207899 46208129 chr19,46207899,46208129,-,MER70B,LTR,ERVL,-15,563,329,46207884,46208457 -6 - chr19 46208258 46208480 chr19,46208258,46208480,-,MER70B,LTR,ERVL,-249,329,90,46208009,46208569 -6 - chr19 46208476 46208548 chr19,46208476,46208548,-,MER70B,LTR,ERVL,-416,162,92,46208060,46208639 -6 - chr19 46208548 46208910 chr19,46208548,46208910,+,THE1D,LTR,ERVL-MaLR,3,381,0,46208546,46208910 +6 + chr19 46208910 46208987 chr19,46208910,46208987,-,MER70B,LTR,ERVL,-487,91,22,46208423,46209008 -6 - chr19 46209001 46209200 chr19,46209001,46209200,+,L2b,LINE,L2,3133,3374,-1,46205869,46209201 +6 + chr19 46209605 46209628 chr19,46209605,46209628,+,(AC)n,Simple_repeat,Simple_repeat,1,23,0,46209605,46209628 +6 + chr19 46210227 46210269 chr19,46210227,46210313,-,L2b,LINE,L2,-196,3179,3093,46210031,46213405 -1 - chr19 46212790 46212862 chr19,46212742,46212862,+,L2a,LINE,L2,3302,3424,-2,46209441,46212864 +2 + chr19 46214516 46214628 chr19,46214516,46214628,-,MIRb,SINE,MIR,-35,233,118,46214481,46214745 -6 - chr19 46229010 46229126 chr19,46229010,46229143,+,L2a,LINE,L2,3289,3424,-2,46225722,46229145 -2 + chr19 46320197 46320241 chr19,46319947,46320241,+,AluSx,SINE,Alu,1,294,-18,46319947,46320259 -5 + chr19 46382493 46382524 chr19,46382493,46382791,-,L1MC4,LINE,L1,-3,8039,7742,46382490,46390532 +2 - chr19 46382755 46382791 chr19,46382493,46382791,-,L1MC4,LINE,L1,-3,8039,7742,46382490,46390532 +4 - chr19 46382910 46383146 chr19,46382910,46383146,-,L1MC4,LINE,L1,-312,7730,7492,46382598,46390637 +6 - chr19 46424697 46425237 chr19,46424603,46425299,-,Charlie15b,DNA,hAT-Charlie,-1,1060,320,46424602,46425618 +1 - chr19 46495193 46495527 chr19,46495193,46495527,-,MamGyp-int,LTR,Gypsy,-4726,377,38,46490467,46495564 -6 - chr19 46547056 46547070 chr19,46546800,46547070,-,AluJb,SINE,Alu,-10,302,9,46546790,46547078 +5 - chr19 46568081 46568427 chr19,46568081,46568568,-,MLT1F2,LTR,ERVL-MaLR,-30,530,17,46568051,46568584 +2 - chr19 46576616 46576660 chr19,46576616,46576660,-,MLT1F,LTR,ERVL-MaLR,-6,542,500,46576610,46577159 +6 - chr19 46576660 46576717 chr19,46576660,46576791,+,THE1D,LTR,ERVL-MaLR,1,153,-228,46576660,46577019 -2 + chr19 46589146 46589235 chr19,46589117,46589309,+,MLT1J2,LTR,ERVL-MaLR,1,187,-224,46589117,46589533 -1 + chr19 46589564 46589630 chr19,46589309,46589630,-,AluY,SINE,Alu,0,311,1,46589309,46589630 +4 - chr19 46589630 46589678 chr19,46589630,46589854,+,MLT1J2,LTR,ERVL-MaLR,188,411,0,46589443,46589854 -2 + chr19 46636810 46637091 chr19,46636790,46637091,-,AluSx1,SINE,Alu,-11,301,1,46636779,46637091 +5 - chr19 46637583 46637882 chr19,46637583,46637882,-,AluJr,SINE,Alu,-14,298,23,46637569,46637904 +6 - chr19 46639024 46639053 chr19,46639024,46639053,+,(GGACA)n,Simple_repeat,Simple_repeat,1,31,0,46639024,46639053 -6 + chr19 46660390 46660408 chr19,46660390,46660541,+,MIRb,SINE,MIR,84,247,-21,46660307,46660562 +4 + chr19 46661744 46661892 chr19,46661744,46661892,+,MER45A,DNA,hAT-Tip100,2,178,0,46661743,46661892 +6 + chr19 46662390 46662437 chr19,46662390,46662629,+,MIR,SINE,MIR,11,252,-10,46662380,46662639 +4 + chr19 46671205 46671336 chr19,46671205,46671336,+,AluJr,SINE,Alu,1,128,-184,46671205,46671520 +6 + chr19 46673469 46673571 chr19,46673343,46673571,+,L2b,LINE,L2,3120,3363,-12,46670224,46673583 +2 + chr19 46677304 46677387 chr19,46677304,46677387,+,L2b,LINE,L2,3338,3423,-3,46673967,46677390 +6 + chr19 46677398 46677445 chr19,46677398,46677445,+,(ATGA)n,Simple_repeat,Simple_repeat,1,47,0,46677398,46677445 +6 + chr19 46732108 46732276 chr19,46731643,46732623,+,L2a,LINE,L2,2088,3213,-213,46729556,46732836 +3 + chr19 46732559 46732623 chr19,46731643,46732623,+,L2a,LINE,L2,2088,3213,-213,46729556,46732836 +2 + chr19 46946535 46946706 chr19,46946524,46946706,-,AluJr,SINE,Alu,-1,311,131,46946523,46946836 -1 - chr19 46946706 46946744 chr19,46946706,46946744,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,38,0,46946706,46946744 +6 + chr19 46946744 46946879 chr19,46946744,46946879,-,AluJr,SINE,Alu,-182,130,2,46946562,46946880 -6 - chr19 46947191 46947243 chr19,46947191,46947243,-,L2a,LINE,L2,-4,3422,3371,46947187,46950613 -6 - chr19 46947288 46947481 chr19,46947288,46947481,+,L1ME1,LINE,L1,5408,5605,-589,46941881,46948070 +6 + chr19 46947481 46947521 chr19,46947481,46947521,+,U13,snRNA,snRNA,1,40,-68,46947481,46947589 +6 + chr19 46947522 46948054 chr19,46947522,46948054,-,MER21A,LTR,ERVL,-6,925,376,46947516,46948429 -6 - chr19 46948059 46948308 chr19,46948059,46948308,-,MER21A,LTR,ERVL,-667,264,9,46947392,46948316 -6 - chr19 46948307 46948369 chr19,46948307,46948369,+,U13_,snRNA,snRNA,29,96,-12,46948279,46948381 +6 + chr19 46948385 46948875 chr19,46948385,46948875,+,L1ME1,LINE,L1,5595,6104,-75,46942791,46948950 +6 + chr19 46948875 46949156 chr19,46948875,46949172,+,AluY,SINE,Alu,1,297,-14,46948875,46949186 +5 + chr19 47484506 47484524 chr19,47484506,47484702,-,MIR,SINE,MIR,-30,232,28,47484476,47484729 -4 - chr19 47488637 47488932 chr19,47488637,47488932,+,AluY,SINE,Alu,1,297,-14,47488637,47488946 -6 + chr19 47488932 47488982 chr19,47488932,47488982,-,MIR3,SINE,MIR,-53,155,105,47488879,47489086 +6 - chr19 47489293 47489342 chr19,47489293,47489342,+,(CCCCT)n,Simple_repeat,Simple_repeat,1,49,0,47489293,47489342 -6 + chr19 47489405 47489519 chr19,47489405,47489596,+,MIRb,SINE,MIR,25,225,-43,47489381,47489639 -1 + chr19 47493515 47493552 chr19,47493515,47493552,+,(CTGC)n,Simple_repeat,Simple_repeat,1,39,0,47493515,47493552 +6 + chr19 47493552 47493564 chr19,47493552,47493564,+,(GCTGACCT)n,Simple_repeat,Simple_repeat,2,56,0,47493551,47493564 +6 + chr19 47495028 47495292 chr19,47495004,47495292,-,AluJo,SINE,Alu,-14,298,2,47494990,47495293 -2 - chr19 47607524 47607609 chr19,47607343,47607631,-,AluSq2,SINE,Alu,-25,288,1,47607318,47607631 -1 - chr19 47607890 47607987 chr19,47607890,47607987,-,L2a,LINE,L2,0,3426,3326,47607890,47611312 +6 - chr19 47607980 47608088 chr19,47607980,47608088,+,L2b,LINE,L2,3249,3365,-10,47604732,47608098 -6 + chr19 47615734 47615886 chr19,47615734,47615886,+,MIRb,SINE,MIR,48,202,-66,47615687,47615952 -6 + chr19 47626167 47626342 chr19,47626147,47626342,-,MIR,SINE,MIR,0,262,63,47626147,47626404 +4 - chr19 47626385 47626395 chr19,47626385,47626706,-,AluJb,SINE,Alu,-9,303,2,47626376,47626707 +1 - chr19 47661844 47662149 chr19,47661844,47662149,+,AluJo,SINE,Alu,1,311,-1,47661844,47662150 -6 + chr19 47662155 47662393 chr19,47662155,47662393,-,MLT1H,LTR,ERVL-MaLR,-77,472,184,47662078,47662576 +6 - chr19 47662393 47662681 chr19,47662393,47662681,+,AluSg,SINE,Alu,1,290,-20,47662393,47662701 -6 + chr19 47662681 47662839 chr19,47662681,47662839,-,MLT1H,LTR,ERVL-MaLR,-366,183,8,47662315,47662846 +6 - chr19 47662996 47663107 chr19,47662996,47663107,-,MLT1L,LTR,ERVL-MaLR,-7,603,461,47662989,47663567 +6 - chr19 47663107 47663401 chr19,47663107,47663401,+,AluSz,SINE,Alu,1,298,-14,47663107,47663415 -6 + chr19 47663401 47663614 chr19,47663401,47663614,-,MLT1L,LTR,ERVL-MaLR,-150,460,246,47663251,47663859 +6 - chr19 47663658 47663697 chr19,47663658,47663697,-,MLT1L,LTR,ERVL-MaLR,-418,144,106,47663240,47663802 +6 - chr19 47663729 47663895 chr19,47663729,47663987,-,MER112,DNA,hAT-Charlie,0,261,1,47663729,47663987 +1 - chr19 47732065 47732092 chr19,47731785,47732092,-,AluYh3,SINE,Alu,-10,301,1,47731775,47732092 -2 - chr19 47732116 47732214 chr19,47732116,47732418,-,AluSx,SINE,Alu,-7,305,1,47732109,47732418 -4 - chr19 47732991 47733082 chr19,47732801,47733082,+,AluSx,SINE,Alu,1,282,-30,47732801,47733112 +2 + chr19 47733082 47733098 chr19,47733082,47733112,+,(AAAATAA)n,Simple_repeat,Simple_repeat,1,31,0,47733082,47733112 +5 + chr19 47864405 47864455 chr19,47864158,47864455,-,AluSx1,SINE,Alu,-15,297,1,47864143,47864455 +4 - chr19 48061371 48061478 chr19,48061301,48061512,-,MIR,SINE,MIR,-10,252,44,48061291,48061555 -1 - chr19 48061586 48061688 chr19,48061577,48061803,-,L2c,LINE,L2,-6,3381,3141,48061571,48064943 -3 - chr19 48063830 48063852 chr19,48063620,48063852,+,MER4B,LTR,ERV1,28,258,-352,48063593,48064204 +2 + chr19 48063852 48063923 chr19,48063852,48064146,-,MER41C,LTR,ERV1,-1,520,262,48063851,48064407 -4 - chr19 48064750 48064945 chr19,48064741,48064991,+,MLT1B,LTR,ERVL-MaLR,141,390,0,48064601,48064991 +5 + chr19 48118432 48118500 chr19,48118234,48118534,+,THE1B,LTR,ERVL-MaLR,15,318,-46,48118220,48118580 +1 + chr19 48122284 48122365 chr19,48122284,48122504,+,L2,LINE,L2,2825,3082,-337,48119460,48122841 +4 + chr19 48127031 48127150 chr19,48126876,48127150,-,Charlie1a,DNA,hAT-Charlie,-187,1268,1037,48126689,48128186 -2 - chr19 48127488 48127706 chr19,48127488,48127779,+,MLT1L,LTR,ERVL-MaLR,125,376,-234,48127364,48128013 +5 + chr19 48145908 48145966 chr19,48145850,48145966,-,MIR,SINE,MIR,-86,122,10,48145764,48145975 -1 - chr19 48145939 48146063 chr19,48145939,48146063,+,MIR,SINE,MIR,107,233,-29,48145833,48146092 +6 + chr19 48147394 48147413 chr19,48147394,48147674,+,AluJo,SINE,Alu,1,312,0,48147394,48147674 +5 + chr19 48198107 48198382 chr19,48198088,48198382,-,AluSx,SINE,Alu,-12,300,1,48198076,48198382 +5 - chr19 48198486 48198594 chr19,48198486,48198594,+,MLT1L,LTR,ERVL-MaLR,412,532,-78,48198075,48198672 -6 + chr19 48198594 48198749 chr19,48198594,48198749,-,AluJr,SINE,Alu,-20,292,135,48198574,48198883 +6 - chr19 48198749 48198782 chr19,48198749,48198782,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,34,0,48198749,48198782 -6 + chr19 48198782 48198911 chr19,48198782,48198911,-,AluJr,SINE,Alu,-178,134,1,48198604,48198911 +6 - chr19 48198911 48198972 chr19,48198911,48198972,+,MLT1L,LTR,ERVL-MaLR,533,591,-19,48198379,48198991 -6 + chr19 48199023 48199178 chr19,48199023,48199178,-,MER5A1,DNA,hAT-Charlie,0,166,3,48199023,48199180 +6 - chr19 48199207 48199511 chr19,48199207,48199511,+,AluSz6,SINE,Alu,1,306,-6,48199207,48199517 -6 + chr19 48210180 48210416 chr19,48209952,48210648,+,L1MEf,LINE,L1,1576,2323,-4317,48208377,48214965 +3 + chr19 48213009 48213154 chr19,48213009,48213201,+,MLT1K,LTR,ERVL-MaLR,379,573,-22,48212631,48213223 +5 + chr19 48256351 48256628 chr19,48256333,48256628,-,AluSc8,SINE,Alu,-16,295,1,48256317,48256628 -2 - chr19 48256628 48256786 chr19,48256628,48256786,+,L1MC4a,LINE,L1,6756,6929,-953,48249873,48257739 +6 + chr19 48256783 48257093 chr19,48256783,48257093,+,L1MC4a,LINE,L1,7451,7763,-119,48249333,48257212 +6 + chr19 48257094 48257253 chr19,48257094,48257253,+,(AT)n,Simple_repeat,Simple_repeat,1,171,0,48257094,48257253 +6 + chr19 48257479 48257775 chr19,48257479,48257775,+,AluSx,SINE,Alu,1,295,-17,48257479,48257792 +6 + chr19 48258163 48258198 chr19,48258163,48258198,+,A-rich,Low_complexity,Low_complexity,1,35,0,48258163,48258198 +6 + chr19 48262900 48263184 chr19,48262852,48263217,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,48262852,48263217 +5 - chr19 48270145 48270187 chr19,48269716,48270187,+,LTR7C,LTR,ERV1,1,471,0,48269716,48270187 -4 + chr19 48270187 48270233 chr19,48270187,48270421,+,AluJr,SINE,Alu,73,312,0,48270115,48270421 -2 + chr19 48466569 48466657 chr19,48466480,48466657,+,MIR3,SINE,MIR,1,182,-26,48466480,48466683 -4 + chr19 48480924 48481354 chr19,48480924,48481354,-,L2,LINE,L2,-450,2969,2416,48480474,48483769 -6 - chr19 48481500 48481812 chr19,48481500,48481812,-,AluSx,SINE,Alu,0,312,1,48481500,48481812 -6 - chr19 48481833 48482248 chr19,48481833,48482248,+,MSTA1,LTR,ERVL-MaLR,2,462,-3,48481832,48482251 +6 + chr19 48482249 48482314 chr19,48482249,48482694,+,MLT1C,LTR,ERVL-MaLR,5,463,-4,48482245,48482698 +5 + chr19 48513222 48513444 chr19,48513222,48513444,-,MIR,SINE,MIR,-13,249,39,48513209,48513482 +6 - chr19 48620799 48620893 chr19,48620641,48620939,+,AluSx,SINE,Alu,1,301,-11,48620641,48620950 -3 + chr19 48623207 48623268 chr19,48622972,48623268,+,AluSc8,SINE,Alu,11,310,-1,48622962,48623269 -4 + chr19 48623268 48623379 chr19,48623268,48623379,-,AluSg,SINE,Alu,-201,109,1,48623067,48623379 +6 - chr19 48910930 48910954 chr19,48910706,48910954,+,MIR,SINE,MIR,13,262,0,48910694,48910954 -5 + chr19 48910975 48911081 chr19,48910975,48911081,+,L2b,LINE,L2,3117,3222,-153,48907859,48911234 -6 + chr19 48926171 48926200 chr19,48925903,48926200,+,AluSz,SINE,Alu,1,298,-14,48925903,48926214 +1 + chr19 48926200 48926353 chr19,48926200,48926353,+,AluJb,SINE,Alu,135,302,-10,48926066,48926363 +6 + chr19 49060613 49060635 chr19,49060332,49060635,-,AluSq2,SINE,Alu,-14,299,1,49060318,49060635 -1 - chr19 49060742 49060828 chr19,49060742,49060828,-,L3,LINE,CR1,-80,4019,3929,49060662,49064756 -6 - chr19 49064329 49064768 chr19,49064329,49064768,+,MSR1,Satellite,Satellite,1,422,0,49064329,49064768 +6 + chr19 49331617 49331627 chr19,49331531,49331627,-,MLT1J2,LTR,ERVL-MaLR,0,444,345,49331531,49331971 +5 - chr19 49331652 49331832 chr19,49331652,49331864,-,MLT1J2,LTR,ERVL-MaLR,-211,237,19,49331441,49331882 +5 - chr19 49332054 49332275 chr19,49331978,49332275,-,MLT1C,LTR,ERVL-MaLR,0,467,155,49331978,49332429 +4 - chr19 49332275 49332320 chr19,49332275,49332575,+,AluSg7,SINE,Alu,2,297,-12,49332274,49332587 -2 + chr19 49357635 49357769 chr19,49357635,49357815,+,MSTB,LTR,ERVL-MaLR,1,185,-241,49357635,49358056 +5 + chr19 49368705 49369242 chr19,49368646,49369242,+,LTR10E,LTR,ERV1,2,612,-21,49368645,49369263 -5 + chr19 49369244 49369459 chr19,49369244,49369459,-,AluSx,SINE,Alu,-104,208,16,49369140,49369474 +6 - chr19 49369485 49369835 chr19,49369485,49369835,+,REP522,Satellite,telo,1021,1350,-467,49368465,49370302 -6 + chr19 49382857 49382948 chr19,49382857,49382964,+,AluJb,SINE,Alu,185,291,-21,49382673,49382985 -2 + chr19 49387356 49387605 chr19,49387267,49387605,+,L1MEg,LINE,L1,4431,4784,-2453,49382837,49390058 -4 + chr19 49387638 49387944 chr19,49387638,49387944,+,AluSx1,SINE,Alu,1,306,-6,49387638,49387950 -6 + chr19 49480368 49480432 chr19,49480368,49480432,+,(CCTGCTG)n,Simple_repeat,Simple_repeat,1,69,0,49480368,49480432 +6 + chr19 49487017 49487171 chr19,49486860,49487171,+,AluJo,SINE,Alu,1,292,-20,49486860,49487191 +2 + chr19 49690331 49690415 chr19,49690331,49690415,+,MIR1_Amn,SINE,MIR,62,151,-79,49690270,49690494 -6 + chr19 49808938 49808982 chr19,49808938,49808982,+,G-rich,Low_complexity,Low_complexity,1,47,0,49808938,49808982 +6 + chr19 49838639 49839413 chr19,49838174,49839413,+,Charlie8,DNA,hAT-Charlie,2,1266,-1162,49838173,49840575 -5 + chr19 49839485 49840076 chr19,49839485,49840475,+,Charlie8,DNA,hAT-Charlie,1379,2428,0,49838107,49840475 -2 + chr19 49844316 49844614 chr19,49844245,49844614,-,MLT1F2,LTR,ERVL-MaLR,-2,558,203,49844243,49844816 +4 - chr19 49844614 49844892 chr19,49844614,49844920,+,AluSq2,SINE,Alu,1,304,-9,49844614,49844929 -2 + chr19 49849010 49849159 chr19,49848966,49849159,-,Tigger13a,DNA,TcMar-Tigger,-539,232,7,49848427,49849165 +4 - chr19 49849314 49849553 chr19,49849314,49849553,-,L2,LINE,L2,-447,2972,2644,49848867,49852196 +6 - chr19 49849775 49849953 chr19,49849775,49849953,+,L2,LINE,L2,2146,2327,-1092,49847630,49851045 -6 + chr19 49850254 49850355 chr19,49850254,49850355,+,L2b,LINE,L2,3242,3364,-11,49847013,49850366 -6 + chr19 49859031 49859142 chr19,49859031,49859142,+,MIR3,SINE,MIR,75,179,-29,49858957,49859171 -6 + chr19 50043196 50043428 chr19,50043152,50043448,+,AluSx1,SINE,Alu,1,299,-13,50043152,50043461 -5 + chr19 50066075 50066205 chr19,50065949,50066205,-,MIR,SINE,MIR,0,262,2,50065949,50066206 -2 - chr19 50066665 50066793 chr19,50066665,50066889,+,MER33,DNA,hAT-Charlie,106,324,0,50066560,50066889 +5 + chr19 50310161 50310172 chr19,50310161,50310285,+,(TC)n,Simple_repeat,Simple_repeat,1,125,0,50310161,50310285 -2 + chr19 50310234 50310285 chr19,50310161,50310285,+,(TC)n,Simple_repeat,Simple_repeat,1,125,0,50310161,50310285 -4 + chr19 50369166 50369237 chr19,50369138,50369237,-,MIRb,SINE,MIR,-58,210,110,50369080,50369346 +4 - chr19 50487392 50487435 chr19,50487370,50487435,+,MIRc,SINE,MIR,61,125,-143,50487310,50487578 -4 + chr19 50555815 50555845 chr19,50555815,50555886,+,L3b,LINE,CR1,4975,5045,-187,50550841,50556073 -2 + chr19 50557684 50557714 chr19,50557684,50557714,+,G-rich,Low_complexity,Low_complexity,1,32,0,50557684,50557714 -6 + chr19 50557762 50557969 chr19,50557762,50558193,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,50557762,50558193 -1 + chr19 50776141 50776415 chr19,50776140,50776415,-,AluJr,SINE,Alu,-19,293,2,50776121,50776416 +5 - chr19 50792685 50792791 chr19,50792676,50792969,-,AluJo,SINE,Alu,-7,305,2,50792669,50792970 +5 - chr19 50793432 50793539 chr19,50793227,50793539,+,AluSx,SINE,Alu,1,307,-5,50793227,50793544 -4 + chr19 50817688 50817739 chr19,50817688,50817739,+,(TC)n,Simple_repeat,Simple_repeat,1,52,0,50817688,50817739 +6 + chr19 50831116 50831228 chr19,50831043,50831228,-,MIRb,SINE,MIR,-48,220,25,50830995,50831252 -2 - chr19 50850911 50851070 chr19,50850469,50851070,-,LTR40a,LTR,ERVL,0,519,1,50850469,50851070 -2 - chr19 50950265 50950307 chr19,50950265,50950308,+,(CTCAGG)n,Simple_repeat,Simple_repeat,1,43,0,50950265,50950308 +4 + chr19 50958768 50958837 chr19,50958634,50958837,-,MIR,SINE,MIR,0,262,56,50958634,50958892 -5 - chr19 50963636 50963649 chr19,50963636,50964429,+,L2a,LINE,L2,2484,3308,-118,50961153,50964547 +5 + chr19 50973181 50973269 chr19,50973165,50973269,-,MIRc,SINE,MIR,-117,151,45,50973048,50973313 -2 - chr19 50991019 50991080 chr19,50991019,50991229,+,MIRb,SINE,MIR,20,256,-6,50991000,50991235 +4 + chr19 51012023 51012129 chr19,51011988,51012161,-,AluJo,SINE,Alu,-3,309,134,51011985,51012294 -5 - chr19 51014374 51014482 chr19,51014306,51014522,-,MIRb,SINE,MIR,-13,255,22,51014293,51014543 -1 - chr19 51034164 51034335 chr19,51034164,51034391,+,GA-rich,Low_complexity,Low_complexity,1,233,0,51034164,51034391 +5 + chr19 51043843 51043934 chr19,51043843,51044111,-,MER4D,LTR,ERV1,-10,893,633,51043833,51044743 -4 - chr19 51051764 51051950 chr19,51051739,51051950,-,MIR,SINE,MIR,-20,210,1,51051719,51051950 -2 - chr19 51051981 51052077 chr19,51051981,51052092,-,MIRb,SINE,MIR,-46,222,106,51051935,51052197 -5 - chr19 51153025 51153054 chr19,51153025,51153054,+,(CTGCT)n,Simple_repeat,Simple_repeat,1,32,0,51153025,51153054 -6 + chr19 51153336 51153601 chr19,51153336,51153601,-,L1MA6,LINE,L1,-213,6087,5830,51153123,51159430 +6 - chr19 51153601 51153734 chr19,51153601,51153734,+,L1MA6,LINE,L1,6105,6231,-69,51147497,51153803 -6 + chr19 51153766 51153843 chr19,51153766,51153843,-,MIRb,SINE,MIR,-170,98,15,51153596,51153857 +6 - chr19 51165221 51165273 chr19,51163914,51165429,+,L1ME1,LINE,L1,5329,6167,-12,51158586,51165441 -3 + chr19 51270163 51270244 chr19,51270115,51270472,-,L2c,LINE,L2,-28,3359,2966,51270087,51273437 +3 - chr19 51278754 51278871 chr19,51278733,51279012,-,AluJb,SINE,Alu,-17,295,1,51278716,51279012 -3 - chr19 51343688 51343801 chr19,51343532,51343801,-,AluSz,SINE,Alu,-26,286,3,51343506,51343803 -2 - chr19 51344072 51344117 chr19,51343911,51344232,+,MLT1G1,LTR,ERVL-MaLR,15,441,-138,51343897,51344370 +5 + chr19 51361712 51361792 chr19,51361697,51362001,-,AluSx4,SINE,Alu,-5,305,1,51361692,51362001 +5 - chr19 51365153 51365220 chr19,51364906,51365220,+,AluSp,SINE,Alu,1,309,-4,51364906,51365224 -4 + chr19 51365220 51365315 chr19,51365220,51365315,+,MIR,SINE,MIR,164,261,-1,51365057,51365316 -6 + chr19 51365429 51365486 chr19,51365429,51365486,-,L2b,LINE,L2,-24,3351,3297,51365405,51368782 +6 - chr19 51414298 51414365 chr19,51413866,51414365,-,LTR3B_,LTR,ERVK,0,499,1,51413866,51414365 -1 - chr19 51519731 51520030 chr19,51519648,51520030,+,MLT1B,LTR,ERVL-MaLR,1,390,0,51519648,51520030 +1 + chr19 51599289 51599473 chr19,51598978,51599473,+,LTR12,LTR,ERV1,1,592,-234,51598978,51599707 +1 + chr19 51599536 51599562 chr19,51599536,51599562,+,(TAT)n,Simple_repeat,Simple_repeat,1,26,0,51599536,51599562 +6 + chr19 51599562 51599735 chr19,51599562,51599735,-,AluSx1,SINE,Alu,-26,286,114,51599536,51599848 -6 - chr19 51599915 51600091 chr19,51599915,51600091,+,MIR,SINE,MIR,68,261,-1,51599848,51600092 +6 + chr19 51600231 51600365 chr19,51600231,51600365,-,L2b,LINE,L2,-214,3161,3025,51600017,51603389 -6 - chr19 51600410 51600470 chr19,51600410,51600662,+,LTR106_Mam,LTR,LTR,417,699,-9,51599994,51600671 +5 + chr19 51639478 51639794 chr19,51639431,51639794,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,51639431,51639794 +5 - chr19 51639871 51639931 chr19,51639871,51640118,+,L1MEg,LINE,L1,1309,1566,-4676,51638563,51644794 -1 + chr19 51685363 51685538 chr19,51685317,51685538,-,Tigger4b,DNA,TcMar-Tigger,-1,360,143,51685316,51685680 +5 - chr19 51685538 51685815 chr19,51685538,51685815,-,AluJb,SINE,Alu,-15,297,1,51685523,51685815 +6 - chr19 51685815 51685965 chr19,51685815,51685965,-,Tigger4b,DNA,TcMar-Tigger,-219,142,1,51685596,51685965 +6 - chr19 51686268 51686468 chr19,51686268,51686468,-,L2b,LINE,L2,0,3375,3162,51686268,51689629 +6 - chr19 51686650 51686875 chr19,51686650,51686875,+,MIRb,SINE,MIR,41,267,-1,51686610,51686876 -6 + chr19 51687024 51687258 chr19,51687024,51687258,+,AluSz,SINE,Alu,46,290,-22,51686979,51687280 -6 + chr19 51687258 51687305 chr19,51687258,51687305,+,(ATAC)n,Simple_repeat,Simple_repeat,1,47,0,51687258,51687305 -6 + chr19 51687379 51687680 chr19,51687379,51687680,+,L1ME4b,LINE,L1,536,826,-66,51686844,51687746 -6 + chr19 51688154 51688501 chr19,51688154,51688544,+,L2c,LINE,L2,2917,3338,-49,51685238,51688593 -2 + chr19 51692707 51692748 chr19,51692707,51692748,+,(TCCCTGG)n,Simple_repeat,Simple_repeat,1,43,0,51692707,51692748 -6 + chr19 51692745 51692771 chr19,51692745,51692771,+,(CTGT)n,Simple_repeat,Simple_repeat,1,26,0,51692745,51692771 -6 + chr19 51693365 51693461 chr19,51693365,51693461,+,(CCTGACC)n,Simple_repeat,Simple_repeat,1,97,0,51693365,51693461 +1 + chr19 51693365 51693456 chr19,51693365,51693461,+,(CCTGACC)n,Simple_repeat,Simple_repeat,1,97,0,51693365,51693461 -1 + chr19 51704495 51704995 chr19,51704495,51705028,+,MSR1,Satellite,Satellite,1,528,-2,51704495,51705030 +5 + chr19 51712033 51712314 chr19,51712019,51712314,-,AluSz,SINE,Alu,-20,292,1,51711999,51712314 -2 - chr19 51712314 51712357 chr19,51712314,51712357,+,L1MB7,LINE,L1,6115,6155,-29,51706200,51712386 +6 + chr19 51712357 51712387 chr19,51712357,51712814,-,L2a,LINE,L2,-1505,1914,1432,51710852,51714245 -5 - chr19 51840655 51840786 chr19,51840655,51840786,+,L1M5,LINE,L1,3716,3857,-2289,51836940,51843075 -6 + chr19 51840799 51840945 chr19,51840799,51841025,+,L1MEf,LINE,L1,17,245,-5955,51840783,51846980 -1 + chr19 51900389 51900447 chr19,51900389,51900447,-,Charlie2b,DNA,hAT-Charlie,-2464,318,260,51897925,51900706 -6 - chr19 51976391 51976436 chr19,51976151,51976436,+,LTR3A,LTR,ERVK,151,466,-18,51976001,51976454 +2 + chr19 51976453 51976865 chr19,51976453,51978688,+,HERVK3-int,LTR,ERVK,1,2288,-4914,51976453,51983602 +5 + chr19 51980927 51981020 chr19,51978686,51981020,+,HERVK3-int,LTR,ERVK,4863,7202,0,51973824,51981020 +2 + chr19 51981020 51981367 chr19,51981020,51981430,+,LTR3A,LTR,ERVK,1,435,-49,51981020,51981479 +5 + chr19 52049491 52049754 chr19,52049491,52049780,-,MLT1E2,LTR,ERVL-MaLR,-166,461,63,52049325,52049842 -5 - chr19 52058490 52058506 chr19,52058162,52058506,-,LTR52,LTR,ERVL,-6,415,6,52058156,52058511 +5 - chr19 52058834 52058867 chr19,52058834,52058867,+,(TTAT)n,Simple_repeat,Simple_repeat,1,34,0,52058834,52058867 -6 + chr19 52058880 52058919 chr19,52058880,52058919,+,AluSz6,SINE,Alu,247,289,-23,52058634,52058942 -6 + chr19 52059071 52059107 chr19,52059071,52059371,+,AluY,SINE,Alu,1,303,-8,52059071,52059379 -2 + chr19 52142626 52142664 chr19,52142566,52142664,-,MER41B,LTR,ERV1,-30,604,510,52142536,52143173 -1 - chr19 52142664 52142717 chr19,52142664,52142877,+,AluJo,SINE,Alu,1,212,-100,52142664,52142977 +4 + chr19 52143917 52143946 chr19,52143708,52143946,-,AluJb,SINE,Alu,-22,290,1,52143686,52143946 -2 - chr19 52169654 52169785 chr19,52169654,52169811,+,AluJb,SINE,Alu,137,305,-7,52169518,52169818 -2 + chr19 52176471 52176603 chr19,52176445,52176603,-,AluJb,SINE,Alu,-8,304,139,52176437,52176741 -2 - chr19 52176605 52177002 chr19,52176605,52177054,+,LTR3A,LTR,ERVK,5,444,-40,52176601,52177094 +5 + chr19 52222304 52222399 chr19,52222304,52222414,+,MIRb,SINE,MIR,36,154,-114,52222269,52222528 -2 + chr19 52228354 52228436 chr19,52228354,52228436,-,LTR16A1,LTR,ERVL,0,456,372,52228354,52228807 +6 - chr19 52229208 52229452 chr19,52229164,52229452,+,AluSx1,SINE,Alu,5,290,-22,52229160,52229474 -5 + chr19 52284780 52285065 chr19,52284455,52285065,-,MER21B,LTR,ERVL,-3,865,161,52284452,52285225 +5 - chr19 52300693 52301084 chr19,52300619,52301084,-,MER9B,LTR,ERVK,0,499,30,52300619,52301113 +5 - chr19 52301094 52301875 chr19,52301094,52301998,-,HERVK9-int,LTR,ERVK,-65,7369,5682,52301029,52307679 +2 - chr19 52301981 52301998 chr19,52301094,52301998,-,HERVK9-int,LTR,ERVK,-65,7369,5682,52301029,52307679 +4 - chr19 52301998 52302130 chr19,52301998,52304816,-,HERVK9-int,LTR,ERVK,-1049,4972,2154,52300949,52306969 +2 - chr19 52307392 52307502 chr19,52305119,52307502,-,HERVK9-int,LTR,ERVK,-3868,2153,1,52301251,52307502 +4 - chr19 52307502 52307544 chr19,52307502,52307999,-,MER9B,LTR,ERVK,0,499,1,52307502,52307999 +2 - chr19 52325824 52325895 chr19,52323080,52325922,+,L1PA15,LINE,L1,3264,6165,0,52319817,52325922 -3 + chr19 52345031 52345081 chr19,52344797,52345081,-,AluSx,SINE,Alu,-20,292,1,52344777,52345081 +4 - chr19 52345081 52345142 chr19,52345081,52345142,+,MER44D,DNA,TcMar-Tigger,167,216,-489,52344915,52345631 -6 + chr19 52345142 52345229 chr19,52345142,52345237,-,MER2,DNA,TcMar-Tigger,0,345,248,52345142,52345484 +1 - chr19 52388842 52389149 chr19,52388786,52389149,-,THE1B,LTR,ERVL-MaLR,0,364,1,52388786,52389149 +5 - chr19 52389149 52389803 chr19,52389149,52389803,-,THE1B-int,LTR,ERVL-MaLR,0,1580,912,52389149,52390714 +6 - chr19 52389793 52390038 chr19,52389793,52390038,-,THE1B-int,LTR,ERVL-MaLR,-1317,263,1,52388476,52390038 +6 - chr19 52390038 52390127 chr19,52390038,52390127,-,THE1B,LTR,ERVL-MaLR,0,364,275,52390038,52390401 +6 - chr19 52390652 52390953 chr19,52390652,52390953,+,AluSp,SINE,Alu,2,306,-7,52390651,52390960 -6 + chr19 52394791 52394847 chr19,52394647,52395061,-,MLT1D,LTR,ERVL-MaLR,-3,502,45,52394644,52395105 +3 - chr19 52395527 52395750 chr19,52395479,52395929,-,MER70A,LTR,ERVL,0,472,1,52395479,52395929 +5 - chr19 52396316 52396499 chr19,52396269,52396615,-,MER70-int,LTR,ERVL,-9,5014,4668,52396260,52401282 +3 - chr19 52396647 52396938 chr19,52396647,52396938,+,AluJr,SINE,Alu,11,286,-26,52396637,52396964 -6 + chr19 52396948 52397117 chr19,52396948,52397117,+,AluSx1,SINE,Alu,117,305,-7,52396832,52397124 -6 + chr19 52397462 52397582 chr19,52397425,52397582,+,(CTTCT)n,Simple_repeat,Simple_repeat,1,170,0,52397425,52397582 -4 + chr19 52585486 52585561 chr19,52585486,52586017,-,MER51C,LTR,ERV1,0,640,124,52585486,52586140 +1 - chr19 52597968 52598103 chr19,52597968,52598243,-,AluY,SINE,Alu,-36,275,1,52597932,52598243 +2 - chr19 52598649 52598887 chr19,52598626,52598924,+,AluJo,SINE,Alu,1,297,-15,52598626,52598939 -1 + chr19 52650437 52650556 chr19,52650252,52650556,-,AluSp,SINE,Alu,-9,304,1,52650243,52650556 +5 - chr19 52650556 52651539 chr19,52650556,52651539,+,HERVIP10F-int,LTR,ERV1,2304,3280,-4457,52648253,52655996 -6 + chr19 52651540 52651711 chr19,52651540,52651711,+,AluSq2,SINE,Alu,141,311,-2,52651400,52651713 -6 + chr19 52651711 52651744 chr19,52651711,52651744,+,(AAAG)n,Simple_repeat,Simple_repeat,1,31,0,52651711,52651744 -6 + chr19 52651769 52651868 chr19,52651769,52651868,-,AluSz,SINE,Alu,-213,99,1,52651556,52651868 +6 - chr19 52652158 52652450 chr19,52652158,52652450,+,AluSg,SINE,Alu,3,296,-14,52652156,52652464 -6 + chr19 52917222 52917393 chr19,52917182,52917393,-,AluSp,SINE,Alu,-15,298,87,52917167,52917479 +4 - chr19 52923673 52924075 chr19,52923621,52924121,+,LTR2B,LTR,ERV1,1,483,0,52923621,52924121 +5 + chr19 52981568 52981654 chr19,52981568,52981909,-,L2a,LINE,L2,-180,3246,2916,52981388,52984824 +1 - chr19 53007512 53007672 chr19,53007251,53007672,+,LTR43,LTR,ERV1,134,582,-20,53007118,53007692 +1 + chr19 53009347 53011424 chr19,53009301,53011424,+,MER50-int,LTR,ERV1,1509,3609,-5310,53007793,53016734 +2 + chr19 53011451 53011898 chr19,53011451,53011898,+,MER50-int,LTR,ERV1,4350,4747,-1792,53007102,53013690 +6 + chr19 53012241 53012568 chr19,53012241,53012568,-,AluSp,SINE,Alu,0,313,1,53012241,53012568 -6 - chr19 53012626 53012881 chr19,53012626,53012881,+,HERV4_I-int,LTR,ERV1,5097,5336,-1203,53007530,53014084 +6 + chr19 53012881 53013180 chr19,53012881,53013185,+,AluY,SINE,Alu,1,303,-8,53012881,53013193 +5 + chr19 53135091 53135176 chr19,53135091,53135176,+,MIRb,SINE,MIR,26,114,-154,53135066,53135330 -6 + chr19 53135202 53135299 chr19,53135202,53135299,-,L1M,LINE,L1,-829,5413,5315,53134373,53140613 +6 - chr19 53135299 53135322 chr19,53135299,53135339,+,(AT)n,Simple_repeat,Simple_repeat,1,40,0,53135299,53135339 -1 + chr19 53162572 53162583 chr19,53162572,53162869,+,AluSg,SINE,Alu,1,297,-13,53162572,53162882 +4 + chr19 53202552 53202702 chr19,53202504,53202766,-,AluSq,SINE,Alu,-1,312,1,53202503,53202766 -3 - chr19 53240675 53240861 chr19,53240545,53241011,+,L1MC1,LINE,L1,5857,6333,0,53234689,53241011 +1 + chr19 53267870 53267926 chr19,53267849,53268084,-,MIR,SINE,MIR,-10,252,11,53267839,53268094 +5 - chr19 53269985 53270320 chr19,53269385,53270726,-,SVA_D,Retroposon,SVA,0,1386,1,53269385,53270726 +3 - chr19 53762509 53762609 chr19,53762509,53762609,-,AluJo,SINE,Alu,-3,309,204,53762506,53762812 -6 - chr19 53762609 53762908 chr19,53762609,53762908,-,AluSz6,SINE,Alu,-10,302,1,53762599,53762908 -6 - chr19 53762908 53762979 chr19,53762908,53762979,-,AluJo,SINE,Alu,-109,203,134,53762799,53763112 -6 - chr19 53762986 53763296 chr19,53762986,53763296,-,AluY,SINE,Alu,0,311,1,53762986,53763296 -6 - chr19 53763296 53763372 chr19,53763296,53763372,-,AluJo,SINE,Alu,-179,133,57,53763117,53763428 -6 - chr19 53763523 53763568 chr19,53763523,53763568,-,AluYk12,SINE,Alu,-133,178,134,53763390,53763701 -6 - chr19 53763568 53763876 chr19,53763568,53763876,-,AluSp,SINE,Alu,-6,307,1,53763562,53763876 -6 - chr19 53763876 53763893 chr19,53763876,53763893,-,AluYk12,SINE,Alu,-178,133,118,53763698,53764010 -6 - chr19 53857878 53857964 chr19,53857848,53858039,-,L1ME4b,LINE,L1,-262,630,495,53857586,53858533 +3 - chr19 53863080 53863177 chr19,53862923,53863206,+,AluSz,SINE,Alu,1,284,-28,53862923,53863234 -3 + chr19 53864763 53864794 chr19,53864253,53864794,+,ERVL-E-int,LTR,ERVL,3908,4595,-1059,53860346,53865853 +1 + chr19 53865510 53865624 chr19,53865313,53865624,-,AluSx,SINE,Alu,0,312,1,53865313,53865624 -2 - chr19 53865634 53865728 chr19,53865634,53865774,+,ERVL-E-int,LTR,ERVL,4803,4948,-766,53860832,53866540 +4 + chr19 53874626 53874641 chr19,53874570,53874641,+,(CTTC)n,Simple_repeat,Simple_repeat,1,74,0,53874570,53874641 -5 + chr19 53874763 53874821 chr19,53874763,53874953,-,AluSx,SINE,Alu,0,312,121,53874763,53875073 +2 - chr19 53875823 53875864 chr19,53875567,53875864,+,AluSx1,SINE,Alu,1,297,-15,53875567,53875879 -4 + chr19 53876013 53876042 chr19,53876013,53876042,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,29,0,53876013,53876042 -6 + chr19 54119511 54119795 chr19,54119495,54119795,-,AluSz,SINE,Alu,-11,301,1,54119484,54119795 +5 - chr19 54119917 54120210 chr19,54119917,54120210,-,L2b,LINE,L2,-61,3314,3004,54119856,54123213 +6 - chr19 54122074 54122406 chr19,54122074,54122456,-,MLT1J,LTR,ERVL-MaLR,-52,460,4,54122022,54122459 +2 - chr19 54123633 54123674 chr19,54123633,54123674,+,(AC)n,Simple_repeat,Simple_repeat,1,41,0,54123633,54123674 -6 + chr19 54123760 54123812 chr19,54123760,54123812,+,(GGAGCT)n,Simple_repeat,Simple_repeat,1,56,0,54123760,54123812 -6 + chr19 54124080 54124190 chr19,54124080,54124190,-,L2c,LINE,L2,-2,3385,3277,54124078,54127466 +6 - chr19 54124465 54124494 chr19,54124465,54124494,+,(CCTC)n,Simple_repeat,Simple_repeat,1,29,0,54124465,54124494 -6 + chr19 54124775 54124983 chr19,54124775,54124983,+,MIR,SINE,MIR,1,238,-24,54124775,54125007 -6 + chr19 54125005 54125195 chr19,54125005,54125195,-,MER77B,LTR,ERVL,-86,614,366,54124919,54125560 +6 - chr19 54125212 54125343 chr19,54125212,54125513,+,AluSx,SINE,Alu,1,300,-12,54125212,54125525 -1 + chr19 54199457 54199652 chr19,54199457,54199652,-,MIR,SINE,MIR,-17,245,39,54199440,54199690 +6 - chr19 54199865 54199971 chr19,54199842,54200132,+,AluSq2,SINE,Alu,1,297,-16,54199842,54200148 -1 + chr19 54309182 54309492 chr19,54309182,54309492,+,AluY,SINE,Alu,1,309,-2,54309182,54309494 -6 + chr19 54430975 54431054 chr19,54430975,54431054,+,G-rich,Low_complexity,Low_complexity,1,82,0,54430975,54431054 -6 + chr19 54434183 54434457 chr19,54434063,54434457,+,L2,LINE,L2,2584,3003,-416,54431480,54434873 +1 + chr19 54438188 54438238 chr19,54438188,54438238,+,(GT)n,Simple_repeat,Simple_repeat,1,50,0,54438188,54438238 -6 + chr19 54438280 54438346 chr19,54438280,54438756,+,L1ME3G,LINE,L1,11,486,-2291,54438270,54441047 -5 + chr19 54438665 54438756 chr19,54438280,54438756,+,L1ME3G,LINE,L1,11,486,-2291,54438270,54441047 -5 + chr19 54438950 54439044 chr19,54438950,54439044,+,MIRb,SINE,MIR,65,159,-109,54438886,54439153 -6 + chr19 54439044 54439348 chr19,54439044,54439348,+,MER46C,DNA,TcMar-Tigger,18,336,-2,54439027,54439350 -6 + chr19 54444813 54445179 chr19,54444709,54445187,+,MLT2B3,LTR,ERVL,60,554,0,54444650,54445187 -5 + chr19 54448651 54448966 chr19,54448651,54448966,+,AluSg,SINE,Alu,1,309,-1,54448651,54448967 -6 + chr19 54589441 54589515 chr19,54589342,54589515,+,AluSx,SINE,Alu,123,295,-17,54589220,54589532 +1 + chr19 54589515 54589636 chr19,54589515,54589636,+,L1M4,LINE,L1,4421,4541,-1605,54585095,54591241 +6 + chr19 54589637 54589674 chr19,54589637,54589674,+,MLT2A2,LTR,ERVL,525,561,0,54589113,54589674 +6 + chr19 54589683 54589874 chr19,54589683,54589874,-,L1P4c,LINE,L1,-6464,764,596,54583219,54590469 -6 - chr19 54635914 54636076 chr19,54635914,54636358,-,L2a,LINE,L2,0,3426,2916,54635914,54639273 +2 - chr19 54638694 54638892 chr19,54638538,54639385,-,L1MA8,LINE,L1,-2,6289,5429,54638536,54644813 +1 - chr19 54890673 54890727 chr19,54890415,54890727,-,AluSg,SINE,Alu,0,310,1,54890415,54890727 -1 - chr19 54890808 54890900 chr19,54890808,54890900,-,FLAM_A,SINE,Alu,-10,132,41,54890798,54890940 -6 - chr19 54891073 54891420 chr19,54891073,54891496,-,LTR101_Mam,LTR,ERVL,-309,520,99,54890764,54891594 -5 - chr19 55042800 55043030 chr19,55042756,55043030,-,MLT1F2,LTR,ERVL-MaLR,-211,349,62,55042545,55043091 -2 - chr19 55043119 55043251 chr19,55043119,55043400,+,AluJb,SINE,Alu,1,296,-16,55043119,55043416 +5 + chr19 55044105 55044173 chr19,55043920,55044173,-,AluY,SINE,Alu,-16,295,45,55043904,55044217 -2 - chr19 55046474 55046545 chr19,55046260,55046545,-,AluSx,SINE,Alu,-12,300,18,55046248,55046562 -2 - chr19 55046641 55046898 chr19,55046641,55046898,+,AluSx,SINE,Alu,3,290,-22,55046639,55046920 +4 + chr19 55053855 55053925 chr19,55053855,55053925,+,MIRb,SINE,MIR,185,254,-14,55053671,55053939 -6 + chr19 55159684 55159870 chr19,55159684,55159870,-,MSR1,Satellite,Satellite,-8,185,1,55159676,55159870 -6 - chr19 55162752 55162801 chr19,55162723,55162809,+,MER2,DNA,TcMar-Tigger,165,250,-95,55162559,55162904 +3 + chr19 55177342 55177473 chr19,55177342,55177473,+,L2c,LINE,L2,3036,3175,-251,55174307,55177724 +6 + chr19 55221053 55221616 chr19,55221053,55221846,+,L1ME3,LINE,L1,5227,6042,-120,55215827,55221966 +5 + chr19 55227742 55228016 chr19,55227742,55228016,+,L2a,LINE,L2,2921,3239,-187,55224822,55228203 -6 + chr19 55230217 55230279 chr19,55230217,55230307,+,(CT)n,Simple_repeat,Simple_repeat,1,92,0,55230217,55230307 -1 + chr19 55312272 55312309 chr19,55312272,55312309,+,(TTTA)n,Simple_repeat,Simple_repeat,1,37,0,55312272,55312309 -6 + chr19 55475983 55475996 chr19,55475844,55475996,+,MER20,DNA,hAT-Charlie,51,215,-4,55475794,55476000 -5 + chr19 55612499 55612664 chr19,55612499,55612664,-,AluJb,SINE,Alu,-10,302,138,55612489,55612801 +6 - chr19 55612676 55612910 chr19,55612676,55612910,-,MIR,SINE,MIR,-13,249,7,55612663,55612916 +6 - chr19 55661928 55661989 chr19,55661928,55661989,+,(TCCCC)n,Simple_repeat,Simple_repeat,1,61,0,55661928,55661989 -6 + chr19 55662369 55662394 chr19,55662369,55662479,+,(CC)n,Simple_repeat,Simple_repeat,1,110,0,55662369,55662479 -2 + chr19 55671377 55671499 chr19,55671158,55671499,-,L2a,LINE,L2,-687,2732,2359,55670471,55673857 -2 - chr19 55671694 55671782 chr19,55671694,55671782,+,L2a,LINE,L2,3336,3426,0,55668359,55671782 +6 + chr19 55671844 55672069 chr19,55671844,55672146,+,AluSg,SINE,Alu,1,298,-12,55671844,55672158 +5 + chr19 55694118 55694243 chr19,55693933,55694243,+,AluSp,SINE,Alu,1,309,-4,55693933,55694247 -5 + chr19 56066684 56066846 chr19,56066675,56066846,-,MER20,DNA,hAT-Charlie,-5,214,31,56066670,56066876 -1 - chr19 56077179 56077342 chr19,56077134,56077486,+,MLT1I,LTR,ERVL-MaLR,9,404,-7,56077126,56077493 +3 + chr19 56078112 56078243 chr19,56078016,56078243,+,MER57A1,LTR,ERV1,204,432,0,56077813,56078243 +2 + chr19 56078306 56078480 chr19,56078306,56078480,+,MLT1A,LTR,ERVL-MaLR,196,371,-3,56078111,56078483 +6 + chr19 56078480 56078667 chr19,56078480,56078667,+,MER107,DNA,hAT-Charlie,1,200,0,56078480,56078667 +6 + chr19 56149817 56149866 chr19,56149481,56149866,-,L1PA8,LINE,L1,-2,6170,5773,56149479,56155638 -1 - chr19 56149866 56150035 chr19,56149866,56150035,-,MLT1D,LTR,ERVL-MaLR,-329,176,1,56149537,56150035 -6 - chr19 56150187 56150302 chr19,56150187,56150302,+,Charlie18a,DNA,hAT-Charlie,144,262,-80,56150044,56150382 +6 + chr19 56150403 56150490 chr19,56150403,56150684,+,MER113,DNA,hAT-Charlie,137,440,-81,56150267,56150765 +5 + chr19 56311928 56311952 chr19,56311886,56311952,+,MIR,SINE,MIR,205,261,-1,56311682,56311953 -5 + chr19 56312023 56312331 chr19,56312023,56312331,-,Charlie5,DNA,hAT-Charlie,-87,2537,2211,56311936,56314541 +6 - chr19 56312357 56312486 chr19,56312357,56312768,+,L1MD3,LINE,L1,7567,7987,-8,56304791,56312776 -1 + chr19 56315643 56315698 chr19,56315643,56315698,+,MIR3,SINE,MIR,93,144,-64,56315551,56315762 +6 + chr19 56315706 56315881 chr19,56315706,56315881,+,MIR,SINE,MIR,58,244,-18,56315649,56315899 +6 + chr19 56316056 56316194 chr19,56316056,56316194,+,MIRb,SINE,MIR,24,156,-112,56316033,56316306 +6 + chr19 56316196 56316274 chr19,56316196,56316274,+,MIR1_Amn,SINE,MIR,59,144,-86,56316138,56316360 +6 + chr19 56316385 56316511 chr19,56316385,56316511,-,L1M5,LINE,L1,-726,5516,5386,56315659,56321896 -6 - chr19 56316522 56316636 chr19,56316522,56316636,-,HY1,scRNA,scRNA,-5,114,1,56316517,56316636 -6 - chr19 56340910 56340949 chr19,56340910,56340949,+,L1P2,LINE,L1,854,892,-5292,56340057,56346241 +6 + chr19 56341004 56341037 chr19,56341004,56341037,+,MER4A1,LTR,ERV1,55,87,-385,56340950,56341422 +5 + chr19 56341037 56341110 chr19,56341037,56341110,-,L1PA10,LINE,L1,-5014,1339,1267,56336023,56342376 -6 - chr19 56341111 56341287 chr19,56341111,56341480,+,L1P2,LINE,L1,1353,1722,-4462,56339759,56345942 +5 + chr19 56347081 56347582 chr19,56347037,56347582,-,LTR6A,LTR,ERV1,0,564,11,56347037,56347592 +5 - chr19 56347585 56348183 chr19,56347585,56348341,+,HUERS-P3-int,LTR,ERV1,2490,3253,-5666,56345096,56354007 -1 + chr19 56354493 56354541 chr19,56354430,56354541,-,L2,LINE,L2,-1365,2054,1942,56353065,56356482 +5 - chr19 56363293 56363352 chr19,56363293,56363352,+,(TTTTCT)n,Simple_repeat,Simple_repeat,1,61,0,56363293,56363352 -6 + chr19 56364956 56365048 chr19,56364406,56365048,+,L1ME2,LINE,L1,5441,6164,0,56358966,56365048 -1 + chr19 56365715 56365949 chr19,56365534,56366197,+,L1MCa,LINE,L1,1,681,-5827,56365534,56372024 -1 + chr19 56367229 56367360 chr19,56367077,56367379,+,AluJr,SINE,Alu,1,298,-14,56367077,56367393 -3 + chr19 56387593 56387698 chr19,56387593,56387761,-,AluJo,SINE,Alu,-14,298,137,56387579,56387897 -4 - chr19 56388260 56388424 chr19,56388112,56388534,+,L1MC4,LINE,L1,6837,7280,-762,56381276,56389296 +5 + chr19 56397881 56397966 chr19,56397744,56397966,-,AluJb,SINE,Alu,-68,244,35,56397676,56398000 -2 - chr19 56397966 56398590 chr19,56397966,56398590,-,LTR9D,LTR,ERV1,0,645,1,56397966,56398590 -5 - chr19 56398590 56398622 chr19,56398590,56398622,-,AluJb,SINE,Alu,-278,34,4,56398312,56398625 -6 - chr19 56398730 56399172 chr19,56398730,56399240,+,MER83,LTR,ERV1,1,448,0,56398730,56399240 +5 + chr19 56478552 56478625 chr19,56478552,56478625,+,MER58B,DNA,hAT-Charlie,244,315,-26,56478309,56478651 +6 + chr19 56480397 56480466 chr19,56480361,56480466,-,L2a,LINE,L2,-196,3230,3124,56480165,56483589 +5 - chr19 56480474 56480545 chr19,56480474,56480609,-,L1MEc,LINE,L1,-6101,299,167,56474373,56480775 +2 - chr19 56483796 56483977 chr19,56483325,56484483,+,L2a,LINE,L2,836,2123,-1296,56482490,56485779 -1 + chr19 56491584 56491766 chr19,56491584,56492063,+,L1MEf,LINE,L1,1303,1813,-4387,56490282,56496450 +4 + chr19 56494387 56494492 chr19,56494387,56494492,+,L2,LINE,L2,2037,2151,-1268,56492351,56495760 +6 + chr19 56494540 56494990 chr19,56494540,56494990,-,L1MB3,LINE,L1,-1,6182,5717,56494539,56500706 -5 - chr19 56495080 56495441 chr19,56495080,56495520,+,LTR47B2,LTR,ERVL,17,433,-1,56495064,56495521 +5 + chr19 56497301 56497449 chr19,56495523,56497544,+,ERVL47-int,LTR,ERVL,3,2271,-2975,56495521,56500519 +3 + chr19 56500094 56500113 chr19,56500000,56500113,+,MER4E,LTR,ERV1,652,766,0,56499349,56500113 +2 + chr19 56500113 56500266 chr19,56500113,56500266,+,MER4B-int,LTR,ERV1,1,155,-6603,56500113,56506869 +6 + chr19 56500266 56500616 chr19,56500266,56500616,+,MER31B,LTR,ERV1,7,390,-76,56500260,56500692 +6 + chr19 56535299 56535320 chr19,56535235,56535320,+,MLT1L,LTR,ERVL-MaLR,3,84,-526,56535233,56535846 +1 + chr19 56536175 56536280 chr19,56536175,56536280,-,MLT1J2,LTR,ERVL-MaLR,-71,377,282,56536104,56536561 +6 - chr19 56538017 56538193 chr19,56538017,56538193,-,L2a,LINE,L2,-270,3156,2957,56537747,56541149 +6 - chr19 56545566 56545795 chr19,56545521,56545795,-,MER54A,LTR,ERVL,-300,601,261,56545221,56546055 +5 - chr19 56546019 56546192 chr19,56546019,56546192,-,MIR,SINE,MIR,-14,248,72,56546005,56546263 +6 - chr19 56546192 56546634 chr19,56546192,56546634,-,Charlie14a,DNA,hAT-Charlie,-608,558,67,56545584,56546700 +6 - chr19 56547050 56547271 chr19,56547050,56547445,-,MLT1B,LTR,ERVL-MaLR,0,390,1,56547050,56547445 +2 - chr19 56672268 56672375 chr19,56672095,56672375,+,AluSx,SINE,Alu,20,304,-8,56672076,56672383 +1 + chr19 56672574 56672587 chr19,56672544,56672587,+,(TTTA)n,Simple_repeat,Simple_repeat,1,44,0,56672544,56672587 -5 + chr19 56684301 56684317 chr19,56684267,56684317,+,L2c,LINE,L2,3248,3303,-84,56681020,56684401 +2 + chr19 56684405 56684455 chr19,56684405,56684455,+,L1M2,LINE,L1,2946,2990,-3153,56681460,56687608 +6 + chr19 56684455 56684584 chr19,56684455,56684584,+,FLAM_C,SINE,Alu,1,133,-10,56684455,56684594 +6 + chr19 56684584 56684653 chr19,56684584,56684655,+,L1M2,LINE,L1,2991,3058,-3088,56681594,56687743 +5 + chr19 56690686 56690745 chr19,56690267,56690954,-,L1MB3,LINE,L1,-53,6130,5436,56690214,56696389 -1 - chr19 56707293 56707500 chr19,56707150,56707742,-,L2,LINE,L2,-1940,1479,806,56705210,56708547 -1 - chr19 56709799 56709840 chr19,56709778,56709840,-,AluJo,SINE,Alu,-13,299,238,56709765,56710077 -2 - chr19 56709833 56709856 chr19,56709833,56709908,+,MER74A,LTR,ERVL,440,518,-40,56709394,56709948 +4 + chr19 56759817 56759833 chr19,56759353,56759833,+,MER74A,LTR,ERVL,7,513,-45,56759347,56759878 +2 + chr19 56791163 56791307 chr19,56791163,56791413,+,MIR,SINE,MIR,5,260,-2,56791159,56791415 +5 + chr19 56797993 56798339 chr19,56797891,56798339,+,LOR1-int,LTR,ERV1,1075,1931,-2354,56796817,56800693 +2 + chr19 56798339 56799627 chr19,56798339,56799627,+,L1PA11,LINE,L1,4869,6174,0,56793471,56799627 +5 + chr19 56799624 56799646 chr19,56799624,56800208,+,L1ME2z,LINE,L1,5595,6167,-277,56794030,56800485 +5 + chr19 56841177 56841353 chr19,56841177,56841353,+,L1ME4b,LINE,L1,1,120,-772,56841177,56842125 +1 + chr19 56841811 56841927 chr19,56841811,56841927,+,L1ME4b,LINE,L1,5615,5731,-393,56836197,56842320 +6 + chr19 56847952 56848169 chr19,56847569,56848169,-,L1MEi,LINE,L1,-1488,724,134,56846081,56848302 -2 - chr19 56848286 56848556 chr19,56848286,56848591,+,Charlie1b,DNA,hAT-Charlie,111,437,-86,56848176,56848677 +5 + chr19 57261715 57262216 chr19,57261715,57262216,-,MER68,LTR,ERVL,-258,680,3,57261457,57262218 -6 - chr19 57267220 57267560 chr19,57267147,57267560,-,MER77,LTR,ERVL,-100,600,176,57267047,57267735 +5 - chr19 57267560 57267712 chr19,57267560,57268198,+,MER41B,LTR,ERV1,1,516,-118,57267560,57268316 -2 + chr19 57276935 57277056 chr19,57276276,57277257,-,MER41-int,LTR,ERV1,-5170,2367,625,57271106,57277881 +3 - chr19 57278116 57278182 chr19,57277554,57278202,-,MER41-int,LTR,ERV1,-5322,624,3,57272232,57278204 +3 - chr19 57293495 57294154 chr19,57293495,57294154,-,L1MA5,LINE,L1,-2,6298,5602,57293493,57299755 +6 - chr19 57294154 57294290 chr19,57294154,57294290,-,FLAM_A,SINE,Alu,-4,138,1,57294150,57294290 +6 - chr19 57294290 57294469 chr19,57294290,57294864,-,L1MA5,LINE,L1,-699,5601,5011,57293591,57299874 +1 - chr19 57304305 57304450 chr19,57304216,57304450,-,L1M4,LINE,L1,-800,5346,5098,57303416,57309547 -1 - chr19 57304454 57304554 chr19,57304454,57304554,-,FLAM_C,SINE,Alu,-5,138,40,57304449,57304593 -6 - chr19 57304653 57304770 chr19,57304653,57304770,+,L1ME3,LINE,L1,5592,5712,-450,57299062,57305220 +6 + chr19 57304770 57305058 chr19,57304770,57305058,+,AluY,SINE,Alu,1,299,-12,57304770,57305070 +6 + chr19 57305058 57305200 chr19,57305058,57305200,+,L1ME3,LINE,L1,5713,5863,-299,57299346,57305499 +6 + chr19 57305517 57305800 chr19,57305517,57305800,-,AluJo,SINE,Alu,-10,302,1,57305507,57305800 -6 - chr19 57305920 57306172 chr19,57305920,57306172,+,L1ME3,LINE,L1,5886,6161,-1,57300035,57306173 +6 + chr19 57306190 57306441 chr19,57306190,57306441,-,L1ME3D,LINE,L1,-78,6164,5893,57306112,57312333 -6 - chr19 57306650 57306747 chr19,57306650,57306747,-,MIR3,SINE,MIR,-16,192,91,57306634,57306837 -6 - chr19 57306953 57307036 chr19,57306953,57307036,+,AluJr,SINE,Alu,1,83,-229,57306953,57307265 +6 + chr19 57307078 57307361 chr19,57307078,57307361,-,L1MEd,LINE,L1,-3378,2768,2473,57303700,57309833 -6 - chr19 57307384 57307523 chr19,57307384,57307523,+,AluJr,SINE,Alu,1,135,-177,57307384,57307700 +6 + chr19 57308040 57308340 chr19,57308040,57308340,-,L1MEd,LINE,L1,-5331,1772,1450,57302709,57309789 -6 - chr19 57351928 57352012 chr19,57351928,57352256,-,L2,LINE,L2,-476,2943,2606,57351452,57354861 +1 - chr19 57449689 57450054 chr19,57449606,57450054,+,MER74C,LTR,ERVL,3,459,-1,57449604,57450055 +1 + chr19 57450861 57450912 chr19,57450861,57450912,+,(A)n,Simple_repeat,Simple_repeat,1,51,0,57450861,57450912 +6 + chr19 57451212 57451437 chr19,57451212,57451437,-,MSTC,LTR,ERVL-MaLR,-4,424,210,57451208,57451646 -6 - chr19 57451437 57451774 chr19,57451437,57451774,-,AluSp,SINE,Alu,-3,310,1,57451434,57451774 -6 - chr19 57451774 57451967 chr19,57451774,57451967,-,MSTC,LTR,ERVL-MaLR,-219,209,2,57451555,57451968 -6 - chr19 57452226 57452575 chr19,57452226,57452575,+,MSTD,LTR,ERVL-MaLR,31,396,0,57452196,57452575 +6 + chr19 57452898 57453011 chr19,57452898,57453107,-,L1ME1,LINE,L1,0,6334,5949,57452898,57459055 -5 - chr19 57481903 57482005 chr19,57481903,57482188,+,AluJb,SINE,Alu,1,285,-27,57481903,57482215 +5 + chr19 57482896 57482996 chr19,57482584,57483784,+,SVA_C,Retroposon,SVA,36,936,-447,57482549,57484231 +5 + chr19 57625032 57625071 chr19,57624916,57625071,+,AluSx3,SINE,Alu,133,289,-22,57624784,57625093 +1 + chr19 57625207 57625236 chr19,57625207,57625499,-,AluSp,SINE,Alu,-20,293,1,57625187,57625499 -4 - chr19 57626694 57626776 chr19,57626524,57626776,+,AluSq2,SINE,Alu,1,305,-8,57626524,57626784 +2 + chr19 57867038 57867056 chr19,57866760,57867056,+,AluSz,SINE,Alu,1,301,-11,57866760,57867067 -5 + chr19 57867262 57867352 chr19,57867262,57867352,+,5S,rRNA,rRNA,1,90,-31,57867262,57867383 -6 + chr19 57867363 57867394 chr19,57867363,57867577,-,AluSx,SINE,Alu,-9,303,90,57867354,57867666 +2 - chr19 57867851 57867907 chr19,57867597,57867907,+,AluSp,SINE,Alu,2,312,-1,57867596,57867908 -4 + chr19 58003211 58003223 chr19,58003131,58003223,-,MIR,SINE,MIR,-45,217,120,58003086,58003342 -2 - chr19 58003371 58003666 chr19,58003371,58003666,+,AluJo,SINE,Alu,4,296,-16,58003368,58003682 +6 + chr19 58003668 58003957 chr19,58003668,58003957,+,AluSx1,SINE,Alu,1,289,-23,58003668,58003980 +6 + chr19 58004439 58004916 chr19,58004439,58004916,+,L2b,LINE,L2,2740,3230,-157,58001700,58005073 +6 + chr19 58005107 58005240 chr19,58005107,58005240,+,MLT1A1,LTR,ERVL-MaLR,1,131,-297,58005107,58005537 +6 + chr19 58005242 58005785 chr19,58005242,58005785,+,MER4B,LTR,ERV1,1,903,0,58005242,58005785 +6 + chr19 58005832 58006069 chr19,58005832,58006069,+,MLT1A1,LTR,ERVL-MaLR,204,432,0,58005629,58006069 +6 + chr19 58006233 58006609 chr19,58006233,58006609,+,L1ME2,LINE,L1,5443,5824,-340,58000791,58006949 +5 + chr19 58006609 58006909 chr19,58006609,58006909,+,AluSp,SINE,Alu,2,304,-9,58006608,58006918 +6 + chr19 58006909 58007210 chr19,58006909,58007210,+,L1ME2,LINE,L1,5825,6164,0,58001085,58007210 +5 + chr19 58007633 58007915 chr19,58007633,58007915,-,L2a,LINE,L2,0,3426,3095,58007633,58011009 -6 - chr19 58007915 58008222 chr19,58007915,58008222,+,AluY,SINE,Alu,1,308,-3,58007915,58008225 +6 + chr19 58008222 58008296 chr19,58008222,58008296,-,L2a,LINE,L2,-332,3094,3000,58007890,58011295 -6 - chr19 58008388 58008543 chr19,58008388,58008543,-,L2a,LINE,L2,-623,2796,2618,58007765,58011160 -6 - chr19 58008814 58009068 chr19,58008814,58009068,-,AluSz,SINE,Alu,-55,257,1,58008759,58009068 -6 - chr19 58009990 58010086 chr19,58009990,58010086,+,FLAM_C,SINE,Alu,1,72,-61,58009990,58010147 +6 + chr19 58010127 58010282 chr19,58010127,58010282,-,AluSq2,SINE,Alu,-56,257,100,58010071,58010381 -6 - chr19 58010320 58010506 chr19,58010320,58010506,+,AluJr,SINE,Alu,113,296,-16,58010208,58010522 +6 + chr19 58010507 58010644 chr19,58010507,58010644,+,(TATA)n,Simple_repeat,Simple_repeat,1,142,0,58010507,58010644 +6 + chr19 58010820 58011232 chr19,58010820,58011319,-,L1ME1,LINE,L1,-72,6107,5609,58010748,58016927 -5 - chr19 58257270 58257724 chr19,58257220,58257724,-,MER51A,LTR,ERV1,-22,612,1,58257198,58257724 +5 - chr19 58257724 58257842 chr19,58257724,58257842,-,L1MC2,LINE,L1,-363,5981,5862,58257361,58263703 +6 - chr19 58259015 58259217 chr19,58259015,58259217,-,MIRb,SINE,MIR,-35,233,23,58258980,58259239 +6 - chr19 58259402 58259618 chr19,58259402,58259618,-,MLT1D,LTR,ERVL-MaLR,0,505,288,58259402,58259905 +6 - chr19 58259633 58259691 chr19,58259633,58259756,-,MLT1D,LTR,ERVL-MaLR,-269,236,120,58259364,58259875 +2 - chr19 58266890 58267066 chr19,58266890,58267066,+,HAL1,LINE,L1,744,943,-1564,58266147,58268630 +6 + chr19 58267066 58267112 chr19,58267066,58267360,-,AluSz,SINE,Alu,-17,295,2,58267049,58267361 -4 - chr19 58267614 58267685 chr19,58267418,58267700,+,AluSx1,SINE,Alu,1,305,-7,58267418,58267707 +5 + chr19 58306088 58306101 chr19,58305670,58306101,+,LTR3,LTR,ERVK,1,432,0,58305670,58306101 +1 + chr19 58306117 58306453 chr19,58306117,58306453,+,HERVK3-int,LTR,ERVK,28,381,-6821,58306090,58313274 +6 + chr19 58306453 58306514 chr19,58306453,58306514,-,MamRTE1,LINE,RTE-BovB,-316,3496,3438,58306137,58309951 -6 - chr19 58306514 58306634 chr19,58306514,58307228,+,HERVK3-int,LTR,ERVK,382,1133,-6069,58306133,58313297 +5 + chr19 58309030 58310256 chr19,58307322,58310256,+,HERVK3-int,LTR,ERVK,1134,4231,-2971,58306189,58313227 +1 + chr19 58310256 58311248 chr19,58310256,58311248,-,LTR13,LTR,ERVK,0,1007,1,58310256,58311248 -6 - chr19 58311248 58312462 chr19,58311248,58313278,+,HERVK3-int,LTR,ERVK,4232,6280,-922,58307017,58314200 +5 + chr19 58314748 58314839 chr19,58314650,58314839,+,HERVK3-int,LTR,ERVK,7027,7200,-2,58307624,58314841 +5 + chr19 58314839 58315267 chr19,58314839,58315267,+,LTR3,LTR,ERVK,1,437,0,58314839,58315267 +5 + chr19 58315326 58315663 chr19,58315326,58315688,-,L1MB7,LINE,L1,-154,6030,5657,58315172,58321344 -5 - chr19 58349021 58349125 chr19,58349021,58349315,-,AluSq,SINE,Alu,-16,297,1,58349005,58349315 +2 - chr19 58349565 58349675 chr19,58349370,58349675,+,AluSq4,SINE,Alu,1,309,-2,58349370,58349677 -4 + chr19 58349710 58349848 chr19,58349710,58349848,+,GA-rich,Low_complexity,Low_complexity,1,146,0,58349710,58349848 -6 + chr19 58351970 58352093 chr19,58351792,58352093,-,AluSq,SINE,Alu,-9,304,1,58351783,58352093 -1 - chr19 58352795 58352857 chr19,58352795,58352857,-,MIRc,SINE,MIR,-114,154,100,58352681,58352956 -6 - chr19 58354351 58354613 chr19,58354351,58354613,-,L2c,LINE,L2,0,3387,3258,58354351,58357870 -5 - chr19 58355014 58355183 chr19,58355014,58355199,+,LTR33A,LTR,ERVL,329,517,-3,58354686,58355202 +5 + chr19 58364536 58364599 chr19,58364346,58364612,-,MLT1D,LTR,ERVL-MaLR,0,505,241,58364346,58364852 -3 - chr19 58366034 58366062 chr19,58365702,58366062,+,MER74B,LTR,ERVL,181,548,-74,58365522,58366136 +2 + chr19 58404238 58406386 chr19,58404232,58406386,-,SVA_D,Retroposon,SVA,0,1386,1,58404232,58406386 +1 - chr19 58408436 58408484 chr19,58408436,58408521,+,(CAACGCC)n,Simple_repeat,Simple_repeat,1,89,0,58408436,58408521 -1 + chr19 58418560 58418600 chr19,58418327,58418600,-,AluJr,SINE,Alu,-9,303,29,58418318,58418628 -1 - chr19 58418619 58418909 chr19,58418619,58418909,-,AluJr4,SINE,Alu,-22,290,1,58418597,58418909 -6 - chr19 58429370 58429664 chr19,58429370,58429664,-,AluYh3,SINE,Alu,-17,294,1,58429353,58429664 +6 - chr19 58429887 58430426 chr19,58429887,58430426,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,58429887,58430426 -6 + chr19 58441186 58441695 chr19,58441186,58441695,-,L2,LINE,L2,-559,2860,2354,58440627,58444048 -6 - chr19 58442071 58442158 chr19,58442071,58442158,-,LTR12D,LTR,ERV1,0,1254,1186,58442071,58443343 -6 - chr19 58442158 58442473 chr19,58442158,58442473,-,AluYb8,SINE,Alu,-9,309,1,58442149,58442473 -6 - chr19 58442473 58443398 chr19,58442473,58443398,-,LTR12D,LTR,ERV1,-69,1185,362,58442404,58443759 -6 - chr19 58444350 58444485 chr19,58444350,58444485,+,FLAM_C,SINE,Alu,8,218,-84,58444343,58444569 +6 + chr19 58445533 58445849 chr19,58445533,58445849,+,AluSx,SINE,Alu,1,310,-2,58445533,58445851 +5 + chr19 58501017 58501105 chr19,58501017,58501105,-,MIRb,SINE,MIR,-66,196,111,58500951,58501215 -6 - chr19 58571858 58571955 chr19,58571682,58571972,-,AluJb,SINE,Alu,-13,299,6,58571669,58571977 -3 - chr19 58573163 58573218 chr19,58573163,58573218,+,(CCTTCC)n,Simple_repeat,Simple_repeat,1,58,0,58573163,58573218 +6 + chr19 58573745 58573860 chr19,58573745,58573860,+,GA-rich,Low_complexity,Low_complexity,1,118,0,58573745,58573860 +6 + chr19 58573837 58573869 chr19,58573837,58573869,+,(AGAC)n,Simple_repeat,Simple_repeat,1,32,0,58573837,58573869 +6 + chr19 58574338 58574404 chr19,58574338,58574404,+,LTR37B,LTR,ERV1,240,305,-163,58574099,58574567 +6 + chr19 58574404 58574712 chr19,58574404,58574712,-,AluSx,SINE,Alu,0,312,1,58574404,58574712 -6 - chr19 58574712 58574797 chr19,58574712,58574839,+,LTR37B,LTR,ERV1,306,467,-1,58574407,58574840 +5 + chr19 58593896 58594125 chr19,58593471,58594827,-,L1MC3,LINE,L1,-1,7784,6229,58593470,58601055 +5 - chr19 58597183 58597816 chr19,58597124,58597918,-,MER92-int,LTR,ERV1,-1063,3873,2961,58596061,58600878 +5 - chr2 198547 198717 chr2,198547,198717,-,L1ME4c,LINE,L1,-109,721,545,198438,199261 -6 - chr2 199841 199901 chr2,199841,199920,+,L2a,LINE,L2,3322,3409,-17,196520,199937 +4 + chr2 200648 200778 chr2,200648,200778,-,MIR,SINE,MIR,-119,143,9,200529,200786 -6 - chr2 200936 201063 chr2,200936,201063,+,MIRc,SINE,MIR,24,166,-102,200913,201165 +6 + chr2 202383 202531 chr2,202383,202531,-,L1MC4a,LINE,L1,-1492,6390,6240,200891,208770 -6 - chr2 287448 287470 chr2,287448,287470,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,287448,287470 +6 + chr2 301362 301404 chr2,301020,301404,+,Tigger1,DNA,TcMar-Tigger,26,406,-2012,300995,303416 +2 + chr2 301404 301515 chr2,301404,301737,-,AluSz,SINE,Alu,0,312,1,301404,301737 -5 - chr2 305829 305912 chr2,305829,305912,+,MER5A1,DNA,hAT-Charlie,82,164,-2,305748,305914 -5 + chr2 309218 309376 chr2,309218,309376,+,MLT1J-int,LTR,ERVL-MaLR,1142,1301,-86,308077,309462 +5 + chr2 309218 309376 chr2,309218,309376,+,MLT1J-int,LTR,ERVL-MaLR,1142,1301,-86,308077,309462 -5 + chr2 310426 310499 chr2,310426,310534,+,Charlie15a,DNA,hAT-Charlie,100,207,-17,310327,310551 -2 + chr2 335773 335877 chr2,334630,335877,+,L1ME2,LINE,L1,4761,6062,-102,329870,335979 +2 + chr2 335877 336350 chr2,335877,336350,+,MLT1D,LTR,ERVL-MaLR,1,505,0,335877,336350 +6 + chr2 336350 336419 chr2,336350,336419,+,L1ME2,LINE,L1,6063,6131,-33,330288,336452 +6 + chr2 341916 342118 chr2,341916,342442,+,HAL1,LINE,L1,799,1340,-1167,341118,343609 +5 + chr2 388514 388597 chr2,388514,388627,-,LTR81A,LTR,Gypsy,-980,370,243,387534,388869 -4 - chr2 416523 416614 chr2,412761,416614,-,L1MA9,LINE,L1,-2409,5150,462,410352,417075 -2 - chr2 491039 491092 chr2,491039,491092,+,L2a,LINE,L2,3370,3422,-4,487670,491096 -6 + chr2 546240 546273 chr2,546136,546273,-,L2,LINE,L2,-993,2426,2285,545143,548557 -2 - chr2 558778 558947 chr2,558778,558947,+,MIR,SINE,MIR,8,183,-79,558771,559026 +6 + chr2 578002 578101 chr2,577947,578101,+,L1ME3B,LINE,L1,5119,5279,-867,572829,578968 +2 + chr2 681437 681561 chr2,681437,681561,-,L1MEf,LINE,L1,-5490,710,587,675947,682147 -6 - chr2 681561 681593 chr2,681561,681593,+,(TG)n,Simple_repeat,Simple_repeat,1,32,0,681561,681593 +6 + chr2 681593 681812 chr2,681593,681812,-,L1MEf,LINE,L1,-5506,588,357,676087,682168 -6 - chr2 682130 682288 chr2,682130,682288,-,MIRb,SINE,MIR,-93,175,16,682037,682303 -6 - chr2 682536 682802 chr2,682536,682911,+,THE1C,LTR,ERVL-MaLR,1,375,0,682536,682911 +5 + chr2 693114 693235 chr2,693114,693473,+,MER57B1,LTR,ERV1,1,401,0,693114,693473 -1 + chr2 697147 697371 chr2,697075,698130,-,L1MC3,LINE,L1,-166,7619,6503,696909,704632 -5 - chr2 724966 725171 chr2,724272,725171,-,L1MC4,LINE,L1,-553,5689,4677,723719,729847 +5 - chr2 725196 725282 chr2,725196,725579,-,L2c,LINE,L2,-5,3421,2948,725191,728526 +2 - chr2 731186 731224 chr2,731186,731284,-,MER67D,LTR,ERV1,-192,322,213,730994,731496 +1 - chr2 739709 739887 chr2,739709,739887,+,MLT1D,LTR,ERVL-MaLR,5,204,-301,739705,740188 -6 + chr2 806029 806189 chr2,805778,806189,+,L1ME3A,LINE,L1,5676,6140,-33,800103,806222 -4 + chr2 806213 806249 chr2,806213,806658,+,L1MC5,LINE,L1,8175,8616,-688,798039,807346 -2 + chr2 854071 854214 chr2,854071,854214,+,MSTD,LTR,ERVL-MaLR,6,153,-243,854066,854457 -6 + chr2 900216 900303 chr2,899975,900303,+,L1ME3Cz,LINE,L1,34,398,-599,899942,900902 -5 + chr2 901892 901959 chr2,901802,902063,+,AluSg4,SINE,Alu,47,307,-3,901756,902066 -3 + chr2 1341044 1341062 chr2,1340934,1341062,-,MIRb,SINE,MIR,-5,263,114,1340929,1341175 +5 - chr2 1341244 1341433 chr2,1341244,1341433,-,LTR48,LTR,ERV1,-67,720,551,1341177,1341983 +6 - chr2 1341464 1341699 chr2,1341464,1341816,-,LTR48,LTR,ERV1,-360,427,1,1341104,1341816 +2 - chr2 1580201 1580311 chr2,1579328,1580393,+,L1ME3,LINE,L1,5236,6339,-7,1574093,1580400 -1 + chr2 1617167 1617284 chr2,1616958,1617435,+,MER4A1,LTR,ERV1,2,472,0,1616957,1617435 -3 + chr2 1619985 1620087 chr2,1619985,1620087,+,MER106B,DNA,hAT-Charlie,961,1058,-1,1619025,1620088 -6 + chr2 1620510 1620617 chr2,1620454,1620617,+,THE1B,LTR,ERVL-MaLR,1,164,-200,1620454,1620817 -5 + chr2 1620617 1620924 chr2,1620617,1620924,-,AluSx4,SINE,Alu,-2,308,2,1620615,1620925 +6 - chr2 1620924 1621134 chr2,1620924,1621134,+,THE1B,LTR,ERVL-MaLR,165,364,0,1620760,1621134 -6 + chr2 1621518 1621580 chr2,1621518,1621580,-,L2c,LINE,L2,-38,3349,3288,1621480,1624867 +6 - chr2 1825663 1825702 chr2,1825663,1825702,+,(TTTG)n,Simple_repeat,Simple_repeat,1,40,0,1825663,1825702 +6 + chr2 1825805 1825937 chr2,1825805,1825937,+,MLT1E1A,LTR,ERVL-MaLR,5,141,-539,1825801,1826476 +6 + chr2 1825949 1826097 chr2,1825949,1826230,+,MLT1E1A,LTR,ERVL-MaLR,317,628,-26,1825633,1826256 +4 + chr2 1828343 1828530 chr2,1828343,1828530,+,MLT1J2,LTR,ERVL-MaLR,72,276,-168,1828272,1828698 +6 + chr2 2326866 2326992 chr2,2326866,2326992,+,GA-rich,Low_complexity,Low_complexity,1,133,0,2326866,2326992 +6 + chr2 2641989 2642064 chr2,2641804,2642064,-,MER90a,LTR,ERV1,-210,404,134,2641594,2642197 +5 - chr2 2834285 2834323 chr2,2834285,2834323,+,(GGCAGGA)n,Simple_repeat,Simple_repeat,1,41,0,2834285,2834323 -6 + chr2 2870574 2870666 chr2,2870574,2870666,-,MIRb,SINE,MIR,-23,245,161,2870551,2870826 +6 - chr2 2870666 2870999 chr2,2870666,2871067,+,MLT1J1,LTR,ERVL-MaLR,1,441,-3,2870666,2871070 -2 + chr2 2871096 2871193 chr2,2871067,2871193,-,MIRb,SINE,MIR,-108,160,21,2870959,2871213 +4 - chr2 2895091 2895783 chr2,2895091,2895783,-,L1MC4,LINE,L1,-87,7955,7193,2895004,2902975 +6 - chr2 2895878 2896041 chr2,2895878,2896041,-,MIRb,SINE,MIR,-13,255,97,2895865,2896137 +6 - chr2 2896041 2896498 chr2,2896041,2896498,-,MSTB2,LTR,ERVL-MaLR,-3,454,1,2896038,2896498 +6 - chr2 2896498 2896555 chr2,2896498,2896555,-,MIRb,SINE,MIR,-172,96,40,2896326,2896594 +6 - chr2 3125620 3125655 chr2,3125620,3125734,-,MIRb,SINE,MIR,-52,216,96,3125568,3125829 +2 - chr2 3157125 3157181 chr2,3157099,3157181,-,L1MEi,LINE,L1,-2382,83,1,3154717,3157181 -2 - chr2 3298361 3298446 chr2,3298361,3298569,-,Plat_L3,LINE,CR1,-1094,2492,2278,3297267,3300846 +2 - chr2 3300878 3301137 chr2,3300878,3301137,-,MARNA,DNA,TcMar-Mariner,-189,397,126,3300689,3301262 +6 - chr2 3481242 3481271 chr2,3480958,3481271,-,AluJr,SINE,Alu,0,312,2,3480958,3481272 +5 - chr2 3481710 3481885 chr2,3481710,3481901,+,MER5A,DNA,hAT-Charlie,1,184,-5,3481710,3481906 -2 + chr2 3497166 3497410 chr2,3497166,3497410,+,L1ME1,LINE,L1,5880,6164,-15,3491287,3497425 +6 + chr2 3519871 3519893 chr2,3519871,3519893,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,3519871,3519893 +6 + chr2 3531813 3531902 chr2,3531709,3531902,+,Charlie17b,DNA,hAT-Charlie,848,1046,-158,3530862,3532060 -5 + chr2 3531918 3532139 chr2,3531918,3532139,-,PrimLTR79,LTR,ERV1,-9,610,365,3531909,3532503 +5 - chr2 3533143 3533300 chr2,3533143,3533300,-,L2a,LINE,L2,-14,3412,3261,3533129,3536560 +5 - chr2 3533300 3533499 chr2,3533300,3533499,-,MER63A,DNA,hAT-Blackjack,0,210,5,3533300,3533503 +1 - chr2 3533499 3533620 chr2,3533499,3533620,-,L2a,LINE,L2,-166,3260,3128,3533333,3536747 +6 - chr2 3533620 3533844 chr2,3533620,3533844,+,L1MB3,LINE,L1,5554,5781,-399,3528067,3534243 -1 + chr2 3534113 3534255 chr2,3533849,3534784,+,LTR27E,LTR,ERV1,1,1119,-10,3533849,3534794 -1 + chr2 3536725 3536873 chr2,3536725,3537095,-,MLT1A,LTR,ERVL-MaLR,-2,372,4,3536723,3537098 +1 - chr2 3561357 3561435 chr2,3561357,3561435,-,AluSx,SINE,Alu,-227,74,1,3561130,3561435 -6 - chr2 3561438 3561514 chr2,3561438,3561514,+,MER33,DNA,hAT-Charlie,55,134,-190,3561384,3561704 +6 + chr2 3561514 3561689 chr2,3561514,3561689,+,L1PA8,LINE,L1,5991,6171,-1,3555524,3561690 +6 + chr2 3561689 3561745 chr2,3561689,3561820,+,MER33,DNA,hAT-Charlie,135,231,-93,3561555,3561913 +5 + chr2 3603397 3603616 chr2,3603306,3603616,-,AluSx1,SINE,Alu,0,312,1,3603306,3603616 +5 - chr2 3958774 3958868 chr2,3958774,3958868,-,MIRb,SINE,MIR,-71,197,96,3958703,3958963 +6 - chr2 3972845 3972914 chr2,3972596,3972914,+,MSTC,LTR,ERVL-MaLR,42,421,-7,3972555,3972921 -5 + chr2 3973545 3973680 chr2,3973121,3973680,-,MER89,LTR,ERV1,-22,537,1,3973099,3973680 +1 - chr2 4628222 4628356 chr2,4628214,4628356,-,MIRb,SINE,MIR,0,268,107,4628214,4628462 +5 - chr2 4628773 4628817 chr2,4628773,4628817,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,4628773,4628817 -6 + chr2 4629432 4629476 chr2,4629432,4629476,+,(TG)n,Simple_repeat,Simple_repeat,1,44,0,4629432,4629476 -6 + chr2 4629889 4630046 chr2,4629889,4630046,-,MIRb,SINE,MIR,-60,208,45,4629829,4630090 +6 - chr2 4630297 4630390 chr2,4630297,4630424,+,L2c,LINE,L2,3228,3356,-19,4627070,4630443 -2 + chr2 4634894 4634977 chr2,4634770,4634977,-,L3,LINE,CR1,-206,3893,3669,4634564,4638645 +4 - chr2 4642968 4643355 chr2,4642968,4648965,+,L1PA2,LINE,L1,124,6154,-1,4642845,4648966 -1 + chr2 4651313 4651361 chr2,4651060,4651361,-,AluSx1,SINE,Alu,-9,303,3,4651051,4651363 +4 - chr2 4652513 4652565 chr2,4652437,4652565,-,MIR,SINE,MIR,0,262,116,4652437,4652680 +4 - chr2 5549961 5550055 chr2,5549961,5550085,-,MER5A,DNA,hAT-Charlie,-11,178,52,5549950,5550136 +2 - chr2 5602505 5602588 chr2,5602268,5602588,-,LTR16E1,LTR,ERVL,-1,537,218,5602267,5602805 +5 - chr2 5621212 5621322 chr2,5621212,5621322,-,MLT1E3,LTR,ERVL-MaLR,-195,429,320,5621017,5621641 +6 - chr2 5634131 5634179 chr2,5633630,5634179,-,L1MEc,LINE,L1,-4273,2127,1541,5629357,5635719 +4 - chr2 5634197 5634272 chr2,5634197,5634272,-,L1MEc,LINE,L1,-5029,1386,1312,5629168,5635583 +6 - chr2 5649839 5649896 chr2,5649685,5649896,-,MIRc,SINE,MIR,-15,253,38,5649670,5649933 +4 - chr2 5691400 5691442 chr2,5691400,5691442,+,G-rich,Low_complexity,Low_complexity,1,47,0,5691400,5691442 -6 + chr2 5696265 5696293 chr2,5696265,5696294,+,GA-rich,Low_complexity,Low_complexity,1,32,0,5696265,5696294 +4 + chr2 5703567 5703589 chr2,5703529,5703589,+,MLT1J,LTR,ERVL-MaLR,93,152,-360,5703437,5703949 +2 + chr2 5708084 5708095 chr2,5708084,5708176,+,Charlie7a,DNA,hAT-Charlie,150,250,-22,5707935,5708198 +5 + chr2 5728986 5729040 chr2,5728986,5729040,-,MIR,SINE,MIR,-192,70,15,5728794,5729054 -6 - chr2 5810641 5810773 chr2,5810641,5811072,-,L2c,LINE,L2,0,3387,2973,5810641,5814044 +5 - chr2 5811217 5811272 chr2,5811162,5811347,+,MIRc,SINE,MIR,24,241,-27,5811139,5811374 -3 + chr2 5971308 5971387 chr2,5971308,5971387,+,L2a,LINE,L2,3344,3421,-5,5967965,5971392 +6 + chr2 5971529 5971641 chr2,5971529,5971641,-,MER5A,DNA,hAT-Charlie,-56,133,20,5971473,5971660 -6 - chr2 5971765 5971926 chr2,5971765,5971926,+,MIR3,SINE,MIR,16,174,-56,5971750,5971982 +6 + chr2 5972321 5972430 chr2,5972321,5972430,+,MIR1_Amn,SINE,MIR,40,151,-79,5972282,5972509 +6 + chr2 5972445 5972555 chr2,5972445,5972555,-,MER5B,DNA,hAT-Charlie,-2,176,56,5972443,5972610 -6 - chr2 5973183 5973311 chr2,5973183,5973311,-,MIRb,SINE,MIR,0,268,132,5973183,5973442 -6 - chr2 5973328 5973628 chr2,5973328,5973628,+,AluSq2,SINE,Alu,1,299,-14,5973328,5973642 +6 + chr2 5973948 5974079 chr2,5973948,5974079,-,L1MA4,LINE,L1,-143,6148,6015,5973805,5980093 -6 - chr2 5974080 5974220 chr2,5974080,5974220,+,L1MA4,LINE,L1,6151,6300,0,5967930,5974220 +6 + chr2 5984387 5984608 chr2,5984387,5984608,+,MIRb,SINE,MIR,31,253,-15,5984357,5984623 +6 + chr2 5984795 5984852 chr2,5984795,5984852,+,MIR3,SINE,MIR,66,126,-82,5984730,5984934 +6 + chr2 6312954 6313034 chr2,6312884,6313034,-,MIRc,SINE,MIR,-119,149,2,6312765,6313035 +5 - chr2 6313062 6313111 chr2,6313062,6313111,+,MIR1_Amn,SINE,MIR,24,72,-158,6313039,6313269 -6 + chr2 6325397 6325472 chr2,6325336,6325472,+,L2b,LINE,L2,3227,3375,0,6322110,6325472 -4 + chr2 6371929 6372085 chr2,6371929,6372085,+,MIRb,SINE,MIR,15,172,-90,6371915,6372175 -6 + chr2 6372658 6372890 chr2,6372658,6372890,+,LTR90A,LTR,LTR,703,947,-29,6371956,6372919 -6 + chr2 6373272 6373699 chr2,6373272,6373699,+,MSTB,LTR,ERVL-MaLR,1,426,0,6373272,6373699 -6 + chr2 6373769 6374049 chr2,6373769,6374049,+,MLT1A0,LTR,ERVL-MaLR,1,278,-87,6373769,6374136 -6 + chr2 6374176 6374477 chr2,6374176,6374477,+,AluSx,SINE,Alu,2,302,-10,6374175,6374487 -6 + chr2 6374488 6374630 chr2,6374488,6374630,-,MER96,DNA,hAT-Tip100,-1,174,8,6374487,6374637 +6 - chr2 6375012 6375422 chr2,6375012,6375806,+,L1ME1,LINE,L1,3400,4209,-1937,6371613,6377743 -1 + chr2 6618544 6618626 chr2,6618486,6618626,-,MIRb,SINE,MIR,-105,163,17,6618381,6618642 +4 - chr2 6618604 6618689 chr2,6618604,6618760,+,MIRb,SINE,MIR,56,210,-58,6618549,6618818 -2 + chr2 6625029 6625145 chr2,6624871,6625162,+,AluSx,SINE,Alu,1,292,-20,6624871,6625182 -3 + chr2 6632458 6632537 chr2,6632458,6632537,-,L2b,LINE,L2,-5,3370,3290,6632453,6635826 +5 - chr2 6633613 6633701 chr2,6633449,6633701,-,MIR,SINE,MIR,0,262,3,6633449,6633703 +5 - chr2 6635188 6635251 chr2,6635188,6635431,+,MIRb,SINE,MIR,31,266,-2,6635158,6635433 -5 + chr2 6635576 6635813 chr2,6635550,6635813,-,L2c,LINE,L2,-6,3381,3122,6635544,6638934 +1 - chr2 6636414 6636594 chr2,6636414,6636594,+,L2c,LINE,L2,3108,3298,-89,6633307,6636683 -5 + chr2 6637853 6637976 chr2,6637853,6637976,-,MER5A1,DNA,hAT-Charlie,-2,164,43,6637851,6638018 +6 - chr2 6639200 6639279 chr2,6639200,6639308,+,L1M5,LINE,L1,5564,5684,-440,6633637,6639748 -1 + chr2 6647536 6647611 chr2,6647496,6647611,+,MIRb,SINE,MIR,34,162,-68,6647463,6647679 -1 + chr2 6649217 6649259 chr2,6649217,6649259,+,(TCCT)n,Simple_repeat,Simple_repeat,1,46,0,6649217,6649259 -1 + chr2 6729168 6729249 chr2,6729099,6729249,-,MER58A,DNA,hAT-Charlie,-70,154,2,6729029,6729250 +5 - chr2 6731661 6731900 chr2,6731661,6731900,+,MSTB2,LTR,ERVL-MaLR,229,457,0,6731433,6731900 -6 + chr2 6731946 6732260 chr2,6731946,6732327,+,MLT1A1,LTR,ERVL-MaLR,1,404,-4,6731946,6732331 -2 + chr2 6770079 6770095 chr2,6770033,6770095,+,L1MEc,LINE,L1,34,97,-6303,6770000,6776398 -4 + chr2 6828678 6828955 chr2,6828678,6828973,+,AluSc,SINE,Alu,1,294,-15,6828678,6828988 -5 + chr2 6833314 6833437 chr2,6833289,6833437,-,MLT1A,LTR,ERVL-MaLR,-54,354,192,6833235,6833628 +4 - chr2 6833487 6833531 chr2,6833487,6833679,-,MLT1A,LTR,ERVL-MaLR,-186,188,1,6833301,6833679 +1 - chr2 6840291 6840464 chr2,6838363,6846789,-,HUERS-P3-int,LTR,ERV1,-224,8695,262,6838139,6847050 +1 - chr2 6905732 6905868 chr2,6905732,6905868,-,L1ME4a,LINE,L1,-3,6121,5974,6905729,6911841 +6 - chr2 6906141 6906196 chr2,6906141,6906196,+,(AC)n,Simple_repeat,Simple_repeat,1,55,0,6906141,6906196 -6 + chr2 6912277 6912372 chr2,6912273,6912372,-,L2c,LINE,L2,-1,3386,3293,6912272,6915664 +5 - chr2 6912522 6912610 chr2,6912522,6912610,-,MLT1C,LTR,ERVL-MaLR,0,467,382,6912522,6912991 +6 - chr2 6912610 6912650 chr2,6912610,6912650,-,MLT2B2,LTR,ERVL,0,515,455,6912610,6913104 +6 - chr2 6912650 6912712 chr2,6912650,6912712,+,(AGAT)n,Simple_repeat,Simple_repeat,1,63,0,6912650,6912712 -6 + chr2 6912712 6913169 chr2,6912712,6913169,-,MLT2B2,LTR,ERVL,-61,454,1,6912651,6913169 +6 - chr2 6913169 6913529 chr2,6913169,6913529,-,MLT1C,LTR,ERVL-MaLR,-86,381,15,6913083,6913543 +6 - chr2 6913612 6913664 chr2,6913612,6913739,+,MamGypLTR1a,LTR,Gypsy,134,269,-515,6913479,6914254 -5 + chr2 6914552 6914833 chr2,6914521,6914833,-,AluSp,SINE,Alu,0,313,1,6914521,6914833 +5 - chr2 6915266 6915302 chr2,6915266,6915302,-,MIR,SINE,MIR,-9,253,218,6915257,6915519 +6 - chr2 6916301 6916469 chr2,6916301,6916469,-,AluJb,SINE,Alu,-14,298,131,6916287,6916599 +6 - chr2 6916470 6916625 chr2,6916470,6916625,-,MIR,SINE,MIR,-69,193,18,6916401,6916642 +6 - chr2 6918494 6918709 chr2,6918494,6918790,+,AluYd8,SINE,Alu,1,296,-3,6918494,6918793 -1 + chr2 7074504 7074585 chr2,7074344,7074585,-,ORSL-2a,DNA,hAT-Tip100,-52,290,35,7074292,7074619 +5 - chr2 7074621 7074716 chr2,7074621,7074747,+,L2b,LINE,L2,3233,3360,-15,7071389,7074762 -2 + chr2 7260871 7261162 chr2,7258401,7261162,+,L1PA15-16,LINE,L1,1,2502,-4351,7258401,7265513 +1 + chr2 7261208 7261381 chr2,7261208,7261381,+,L1PA16,LINE,L1,5993,6164,-2,7255216,7261383 +6 + chr2 7421769 7421843 chr2,7421769,7422018,+,LTR16A,LTR,ERVL,204,451,0,7421566,7422018 +4 + chr2 7422594 7422772 chr2,7422594,7422772,-,L2,LINE,L2,-512,2907,2721,7422082,7425492 -6 - chr2 7426851 7426972 chr2,7426839,7426972,-,MIR3,SINE,MIR,-75,155,11,7426764,7426982 -2 - chr2 7428543 7428727 chr2,7428536,7428727,+,LTR78,LTR,ERV1,3,193,-1111,7428534,7429838 +2 + chr2 7428754 7428936 chr2,7428754,7428936,+,LTR78,LTR,ERV1,260,445,-859,7428495,7429795 +6 + chr2 7429131 7429609 chr2,7429131,7429609,+,LTR50,LTR,ERVL,9,605,-190,7429123,7429799 +6 + chr2 7429613 7429715 chr2,7429613,7429715,+,LTR33A,LTR,ERVL,417,520,0,7429197,7429715 +6 + chr2 7429717 7429872 chr2,7429717,7429884,+,LTR78,LTR,ERV1,678,855,-449,7429040,7430333 +4 + chr2 7429993 7430240 chr2,7429993,7430240,+,LTR78,LTR,ERV1,1003,1250,-54,7428991,7430294 +6 + chr2 7436005 7436097 chr2,7435927,7436125,-,MIRb,SINE,MIR,-11,257,56,7435916,7436180 -3 - chr2 7449884 7449986 chr2,7449880,7449986,+,MamRTE1,LINE,RTE-BovB,2416,2529,-1283,7447465,7451269 +5 + chr2 7450227 7450254 chr2,7450227,7450254,+,A-rich,Low_complexity,Low_complexity,1,27,0,7450227,7450254 +5 + chr2 7672087 7672196 chr2,7672087,7672196,+,L3,LINE,CR1,3928,4049,-50,7668160,7672246 -6 + chr2 7730571 7730696 chr2,7730571,7730696,+,MIR,SINE,MIR,22,144,-118,7730550,7730814 +6 + chr2 7922425 7922894 chr2,7921748,7922894,+,L1MC3,LINE,L1,6595,7770,-15,7915154,7922909 -5 + chr2 7922939 7923303 chr2,7922939,7923303,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,7922939,7923303 +6 - chr2 7923348 7923952 chr2,7923348,7923952,+,L1M5,LINE,L1,3541,4155,-1991,7919808,7925943 -6 + chr2 7923979 7924148 chr2,7923979,7924148,+,MER5A,DNA,hAT-Charlie,1,183,-6,7923979,7924154 -6 + chr2 7924154 7924293 chr2,7924154,7924293,+,LTR16A1,LTR,ERVL,1,147,-309,7924154,7924602 -5 + chr2 7924323 7924348 chr2,7924323,7924475,-,MER2,DNA,TcMar-Tigger,-16,329,176,7924307,7924650 +2 - chr2 7968145 7968226 chr2,7968100,7968226,+,L2b,LINE,L2,3039,3166,-209,7965062,7968435 -4 + chr2 7976709 7976776 chr2,7976673,7976776,+,MIRb,SINE,MIR,125,241,-27,7976549,7976803 -4 + chr2 7979260 7979326 chr2,7979202,7979410,+,MIRc,SINE,MIR,14,245,-23,7979189,7979433 -1 + chr2 8007791 8008322 chr2,8007791,8008322,-,MLT1E1,LTR,ERVL-MaLR,-2,652,1,8007789,8008322 +6 - chr2 8008407 8008574 chr2,8008407,8008574,+,MIR,SINE,MIR,65,233,-29,8008343,8008603 -6 + chr2 8143162 8143269 chr2,8143162,8143361,-,L2b,LINE,L2,-18,3357,3163,8143144,8146523 -5 - chr2 8207205 8207895 chr2,8207205,8207895,+,L1MDa,LINE,L1,2084,2748,-3789,8205122,8211684 -6 + chr2 8207901 8208040 chr2,8207901,8208075,+,AluSx,SINE,Alu,137,312,0,8207765,8208075 -2 + chr2 8296840 8297121 chr2,8296770,8297121,-,LTR16A,LTR,ERVL,-67,389,12,8296703,8297132 +4 - chr2 8297196 8297233 chr2,8297196,8299795,-,ERV3-16A3_I-int,LTR,ERVL,-50,5176,2501,8297146,8302295 +2 - chr2 8299676 8299793 chr2,8297196,8299795,-,ERV3-16A3_I-int,LTR,ERVL,-50,5176,2501,8297146,8302295 +3 - chr2 8328234 8328291 chr2,8328210,8328291,+,MIRc,SINE,MIR,115,196,-72,8328096,8328363 -4 + chr2 8328316 8328358 chr2,8328316,8328358,+,(CTGCC)n,Simple_repeat,Simple_repeat,1,45,0,8328316,8328358 -6 + chr2 8362178 8362275 chr2,8361946,8362370,+,MSTB,LTR,ERVL-MaLR,1,426,0,8361946,8362370 -3 + chr2 8383095 8383190 chr2,8383059,8383215,-,L2b,LINE,L2,-2,3373,3214,8383057,8386428 +3 - chr2 8559833 8560547 chr2,8559778,8560547,+,L1MA9,LINE,L1,2141,2999,-3639,8557638,8564186 -5 + chr2 8560547 8560759 chr2,8560547,8560759,-,AluSq10,SINE,Alu,-19,294,82,8560528,8560840 +6 - chr2 8560760 8560878 chr2,8560760,8560878,+,L1MA9,LINE,L1,3004,3129,-3509,8557757,8564387 -6 + chr2 8560873 8561086 chr2,8560873,8561086,+,L1MA9,LINE,L1,5601,5810,-834,8555273,8561920 -6 + chr2 8561085 8562005 chr2,8561085,8562005,-,L1PA4,LINE,L1,-11,6144,5224,8561074,8567228 +6 - chr2 8562001 8562934 chr2,8562001,8562934,+,L1MA9,LINE,L1,5802,6810,0,8556200,8562934 -6 + chr2 8562942 8563110 chr2,8562942,8563110,+,L1MB1,LINE,L1,5935,6103,-86,8557008,8563196 -6 + chr2 8563154 8563214 chr2,8563154,8563214,+,L1MB1,LINE,L1,6102,6162,-6,8557053,8563220 -6 + chr2 8563216 8563514 chr2,8563216,8563514,-,AluY,SINE,Alu,-15,296,1,8563201,8563514 +6 - chr2 8563539 8563702 chr2,8563539,8563702,+,L1MA10,LINE,L1,6159,6320,-14,8557381,8563716 -6 + chr2 8563719 8563800 chr2,8563719,8563800,+,MamRep605,LTR?,LTR?,582,666,-183,8563138,8563983 -6 + chr2 8564604 8564670 chr2,8564604,8564670,+,(AAGACA)n,Simple_repeat,Simple_repeat,1,68,0,8564604,8564670 -6 + chr2 8564824 8565234 chr2,8564824,8565234,+,L1ME4a,LINE,L1,5702,6123,-1,8559123,8565235 -6 + chr2 8566387 8566600 chr2,8566387,8566600,+,L2b,LINE,L2,3197,3374,-1,8563191,8566601 -6 + chr2 8567473 8567583 chr2,8567473,8567583,-,MIRb,SINE,MIR,-84,184,76,8567389,8567658 +6 - chr2 8567809 8567932 chr2,8567809,8567932,-,MER5A1,DNA,hAT-Charlie,-29,137,10,8567780,8567941 +6 - chr2 8578570 8578603 chr2,8578463,8578603,+,MIRb,SINE,MIR,49,198,-70,8578415,8578673 -4 + chr2 8607536 8607580 chr2,8607464,8607580,+,MIR3,SINE,MIR,58,178,-30,8607407,8607610 -4 + chr2 8622887 8622922 chr2,8622887,8622922,+,(AC)n,Simple_repeat,Simple_repeat,1,35,0,8622887,8622922 -6 + chr2 8666740 8666787 chr2,8666740,8667361,-,L1ME3E,LINE,L1,-5,6118,5452,8666735,8672812 +2 - chr2 8671138 8671277 chr2,8671138,8671395,+,MIRb,SINE,MIR,5,261,-7,8671134,8671402 -5 + chr2 8673140 8673307 chr2,8673140,8673309,-,MLT1G,LTR,ERVL-MaLR,-198,393,215,8672942,8673523 +2 - chr2 8677865 8677905 chr2,8677865,8677905,+,(CCCCCCA)n,Simple_repeat,Simple_repeat,1,40,0,8677865,8677905 -5 + chr2 8678777 8678820 chr2,8678777,8678820,+,G-rich,Low_complexity,Low_complexity,1,49,0,8678777,8678820 -1 + chr2 8721581 8721612 chr2,8721581,8721612,+,(TGA)n,Simple_repeat,Simple_repeat,1,31,0,8721581,8721612 -6 + chr2 8721705 8721913 chr2,8721705,8721913,+,MIR,SINE,MIR,17,244,-18,8721689,8721931 -6 + chr2 8722156 8722275 chr2,8722156,8722275,-,MER104,DNA,TcMar-Tc2,-49,132,5,8722107,8722279 +6 - chr2 9104367 9104418 chr2,9104367,9104418,-,MIRc,SINE,MIR,0,268,218,9104367,9104635 -6 - chr2 9106655 9106723 chr2,9106655,9106723,-,MIRb,SINE,MIR,-38,230,163,9106617,9106885 -6 - chr2 9106716 9106950 chr2,9106716,9106950,+,MIRb,SINE,MIR,5,262,-6,9106712,9106956 +6 + chr2 9106918 9107050 chr2,9106918,9107050,-,MIRb,SINE,MIR,-91,177,37,9106827,9107086 -6 - chr2 9107173 9107223 chr2,9107173,9107223,+,(CTTGGCATC)n,Simple_repeat,Simple_repeat,1,50,0,9107173,9107223 +6 + chr2 9108789 9109301 chr2,9108789,9109301,+,L1ME3F,LINE,L1,5433,6012,-231,9103357,9109532 +6 + chr2 9109301 9109607 chr2,9109301,9109607,+,AluJb,SINE,Alu,1,306,-6,9109301,9109613 +6 + chr2 9109607 9109784 chr2,9109607,9109784,+,L1ME3F,LINE,L1,6013,6180,-63,9103595,9109847 +6 + chr2 9144664 9144844 chr2,9144280,9144993,-,MER4A,LTR,ERV1,0,664,5,9144280,9144997 -3 - chr2 9556317 9556354 chr2,9556317,9556354,+,(CCCCGAG)n,Simple_repeat,Simple_repeat,1,38,0,9556317,9556354 +6 + chr2 9641364 9641457 chr2,9641354,9641479,-,AluJr,SINE,Alu,-188,124,1,9641166,9641479 -3 - chr2 9649074 9649312 chr2,9649074,9649312,+,MIR,SINE,MIR,16,262,0,9649059,9649312 +6 + chr2 9674023 9674084 chr2,9673998,9674084,-,L2c,LINE,L2,-14,3373,3284,9673984,9677367 -1 - chr2 9674096 9674178 chr2,9674096,9674178,-,MIR3,SINE,MIR,-116,92,16,9673980,9674193 -6 - chr2 9684358 9684456 chr2,9684345,9684612,-,AluJb,SINE,Alu,-45,267,2,9684300,9684613 -3 - chr2 9685674 9685820 chr2,9685660,9685864,+,L1MEd,LINE,L1,159,376,-5866,9685502,9691730 +3 + chr2 9693088 9693165 chr2,9693088,9693165,+,MIR3,SINE,MIR,128,203,-5,9692961,9693170 +6 + chr2 9693191 9693213 chr2,9693191,9693213,+,(AGAA)n,Simple_repeat,Simple_repeat,1,22,0,9693191,9693213 +6 + chr2 9693214 9693285 chr2,9693214,9693285,+,LFSINE_Vert,SINE,tRNA,214,291,-168,9693001,9693453 +6 + chr2 9708101 9708180 chr2,9707974,9708180,+,L2b,LINE,L2,2614,2880,-539,9705361,9708719 +2 + chr2 9708332 9708413 chr2,9708332,9708417,+,L2c,LINE,L2,3296,3383,-4,9705037,9708421 +5 + chr2 9757496 9757548 chr2,9757366,9757548,+,L2a,LINE,L2,3137,3341,-85,9754230,9757633 -5 + chr2 9758116 9758203 chr2,9758116,9758203,-,MIRb,SINE,MIR,-52,216,131,9758064,9758333 +6 - chr2 9758555 9758994 chr2,9758555,9758994,-,MER65C,LTR,ERV1,0,461,1,9758555,9758994 +6 - chr2 9770199 9770226 chr2,9770036,9770226,+,MIRc,SINE,MIR,5,201,-67,9770032,9770293 -4 + chr2 9936602 9936736 chr2,9936602,9936736,-,AluJr,SINE,Alu,-180,132,1,9936422,9936736 -6 - chr2 9936738 9936999 chr2,9936738,9936999,+,L1ME1,LINE,L1,5578,5837,-342,9931161,9937341 +6 + chr2 9937793 9937936 chr2,9937793,9937936,+,MER5A,DNA,hAT-Charlie,1,150,-39,9937793,9937975 +6 + chr2 9938558 9938852 chr2,9938558,9938852,+,AluSx1,SINE,Alu,5,295,-17,9938554,9938869 +6 + chr2 9939430 9939452 chr2,9939430,9939452,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,9939430,9939452 +6 + chr2 10003345 10003505 chr2,10003345,10003505,+,L2a,LINE,L2,2703,2875,-544,10000643,10004049 -6 + chr2 10003789 10004085 chr2,10003789,10004183,+,ERVL-E-int,LTR,ERVL,2467,2864,-2803,10001323,10006986 -2 + chr2 10004652 10004798 chr2,10004652,10004798,+,LTR33,LTR,ERVL,366,515,0,10004287,10004798 -6 + chr2 10004869 10004952 chr2,10004869,10004952,+,LTR33,LTR,ERVL,2,99,-416,10004868,10005368 -6 + chr2 10004986 10005150 chr2,10004986,10005150,+,MLT2B2,LTR,ERVL,367,550,-12,10004620,10005162 -6 + chr2 10005161 10005518 chr2,10005161,10005518,+,ERVL-B4-int,LTR,ERVL,6,375,-5339,10005156,10010857 -6 + chr2 10005564 10006030 chr2,10005564,10006737,-,LTR12D,LTR,ERV1,0,1254,1,10005564,10006737 +1 - chr2 10021578 10021594 chr2,10021565,10021594,+,(CCTC)n,Simple_repeat,Simple_repeat,1,30,0,10021565,10021594 +1 + chr2 10021625 10021824 chr2,10021625,10021824,-,MER63A,DNA,hAT-Blackjack,-2,208,5,10021623,10021828 -6 - chr2 10022503 10022815 chr2,10022503,10022815,+,MLT2C1,LTR,ERVL,53,349,-48,10022451,10022863 +6 + chr2 10039092 10039407 chr2,10039025,10039407,+,L1ME3A,LINE,L1,5811,6173,0,10033215,10039407 -5 + chr2 10039408 10039438 chr2,10039408,10039438,+,(AAGAA)n,Simple_repeat,Simple_repeat,1,32,0,10039408,10039438 -6 + chr2 10039445 10039677 chr2,10039445,10039677,+,L1ME4b,LINE,L1,350,611,-281,10039096,10039958 -6 + chr2 10040184 10040248 chr2,10040184,10040248,-,MIRb,SINE,MIR,-160,108,30,10040024,10040277 +6 - chr2 10040304 10040596 chr2,10040304,10040596,-,AluSq2,SINE,Alu,-2,311,2,10040302,10040597 +6 - chr2 10040641 10040663 chr2,10040641,10041214,-,L2,LINE,L2,-348,3071,2466,10040293,10043679 +1 - chr2 10086020 10086101 chr2,10085927,10086129,-,MIRb,SINE,MIR,-40,228,24,10085887,10086152 -5 - chr2 10449728 10449784 chr2,10449723,10449784,+,L2b,LINE,L2,3308,3375,0,10446416,10449784 +1 + chr2 10450835 10451136 chr2,10450835,10451136,-,AluSz,SINE,Alu,-7,305,1,10450828,10451136 -6 - chr2 10451291 10451327 chr2,10451291,10451425,+,MIR3,SINE,MIR,65,202,-6,10451227,10451431 +5 + chr2 10452319 10452469 chr2,10452192,10452515,+,MARNA,DNA,TcMar-Mariner,231,557,-29,10451962,10452544 +1 + chr2 10455423 10455473 chr2,10455286,10455473,-,MLT1L,LTR,ERVL-MaLR,-46,564,364,10455240,10455836 -2 - chr2 10604772 10604830 chr2,10604772,10604992,-,MER103C,DNA,hAT-Charlie,0,297,75,10604772,10605066 -5 - chr2 10690344 10690440 chr2,10690132,10690440,+,AluSx1,SINE,Alu,2,307,-5,10690131,10690445 +1 + chr2 10690653 10690960 chr2,10690653,10690960,+,AluSx,SINE,Alu,1,307,-5,10690653,10690965 +6 + chr2 10691329 10691380 chr2,10691329,10691380,+,L2a,LINE,L2,3361,3411,-15,10687969,10691395 +6 + chr2 10691541 10691848 chr2,10691541,10691848,+,7SLRNA,srpRNA,srpRNA,5,316,-4,10691537,10691852 +6 + chr2 10691849 10692063 chr2,10691849,10692063,+,MIR,SINE,MIR,25,255,-7,10691825,10692070 +6 + chr2 10692023 10692077 chr2,10692023,10692077,+,L2c,LINE,L2,3334,3386,-1,10688690,10692078 +6 + chr2 10719035 10719082 chr2,10718928,10719106,-,AluSz,SINE,Alu,-1,311,136,10718927,10719241 -3 - chr2 10768047 10768159 chr2,10768047,10768159,-,MER63D,DNA,hAT-Blackjack,-681,380,269,10767366,10768427 +6 - chr2 10854340 10854363 chr2,10854300,10854363,-,L1MB3,LINE,L1,-2001,234,182,10852299,10854544 -2 - chr2 10854445 10854600 chr2,10854445,10854819,+,MER110A,LTR,ERV1,39,438,-30,10854407,10854849 +4 + chr2 10878276 10878400 chr2,10878276,10878400,-,MIRb,SINE,MIR,-122,146,7,10878154,10878406 -6 - chr2 11106696 11106787 chr2,11106538,11106854,+,AluJr,SINE,Alu,1,310,-2,11106538,11106856 -3 + chr2 11123156 11123237 chr2,11123156,11123237,-,MIR,SINE,MIR,0,262,177,11123156,11123413 +6 - chr2 11128539 11128656 chr2,11128163,11128656,+,MER68,LTR,ERVL,36,562,-1,11128128,11128657 -5 + chr2 11128694 11128886 chr2,11128694,11128947,+,L1ME4c,LINE,L1,269,549,-281,11128426,11129228 -2 + chr2 11128984 11129098 chr2,11128979,11129133,+,AluJo,SINE,Alu,154,310,-2,11128826,11129135 -3 + chr2 11129327 11129452 chr2,11129172,11129480,+,AluSz,SINE,Alu,1,309,-3,11129172,11129483 -3 + chr2 11132384 11132556 chr2,11132384,11132556,+,MIR3,SINE,MIR,4,154,-54,11132381,11132610 -6 + chr2 11388023 11388131 chr2,11387999,11388331,-,MER57E1,LTR,ERV1,0,372,10,11387999,11388340 +5 - chr2 11390257 11390367 chr2,11390215,11390454,-,MIRb,SINE,MIR,0,268,23,11390215,11390476 +1 - chr2 11399002 11399218 chr2,11398957,11399426,+,MSTA-int,LTR,ERVL-MaLR,1162,1631,0,11397796,11399426 +1 + chr2 11399672 11399774 chr2,11399443,11399854,+,MSTA,LTR,ERVL-MaLR,8,426,-2,11399436,11399856 +3 + chr2 11400390 11400457 chr2,11400390,11400825,-,ERV3-16A3_LTR,LTR,ERVL,-1,479,44,11400389,11400868 -4 - chr2 11402147 11402256 chr2,11402147,11402256,+,MamGypLTR2b,LTR,Gypsy,2,114,-954,11402146,11403210 +6 + chr2 11402322 11402389 chr2,11402322,11402389,+,(AGGCAAG)n,Simple_repeat,Simple_repeat,1,68,0,11402322,11402389 +6 + chr2 11402426 11402633 chr2,11402426,11402633,+,MamGypLTR2b,LTR,Gypsy,120,326,-596,11402307,11403229 +6 + chr2 11402634 11402678 chr2,11402634,11402678,+,(CCG)n,Simple_repeat,Simple_repeat,1,44,0,11402634,11402678 +6 + chr2 11402680 11402719 chr2,11402680,11402719,+,(CAC)n,Simple_repeat,Simple_repeat,1,39,0,11402680,11402719 +6 + chr2 11403009 11403059 chr2,11403009,11403059,+,MamGypLTR2b,LTR,Gypsy,802,851,-71,11402208,11403130 +6 + chr2 11673964 11674274 chr2,11673914,11674274,-,THE1B,LTR,ERVL-MaLR,0,364,1,11673914,11674274 +5 - chr2 11674362 11674487 chr2,11674362,11674560,+,MIRc,SINE,MIR,15,203,-65,11674348,11674625 -2 + chr2 11681460 11681492 chr2,11681255,11681626,+,MSTA,LTR,ERVL-MaLR,1,428,0,11681255,11681626 +1 + chr2 11682482 11682525 chr2,11682482,11682525,+,L2c,LINE,L2,3099,3141,-234,11679384,11682759 +6 + chr2 11682682 11682775 chr2,11682682,11682775,+,L2c,LINE,L2,3254,3349,-38,11679429,11682813 +6 + chr2 11682819 11682909 chr2,11682819,11682909,+,MER94,DNA,hAT-Blackjack,15,111,-23,11682805,11682932 +6 + chr2 11722232 11722512 chr2,11722232,11722588,-,L3,LINE,CR1,-239,3860,3499,11721993,11726086 +2 - chr2 11723512 11723665 chr2,11723375,11723665,+,AluY,SINE,Alu,1,290,-21,11723375,11723686 -4 + chr2 11742037 11742156 chr2,11741989,11742157,-,MIRb,SINE,MIR,-69,199,7,11741920,11742163 +3 - chr2 11745167 11745301 chr2,11745013,11745426,+,L2b,LINE,L2,2410,2852,-567,11742604,11745993 -1 + chr2 11865943 11866284 chr2,11865943,11866327,+,LTR16A1,LTR,ERVL,45,456,0,11865899,11866327 +5 + chr2 12007774 12007843 chr2,12007774,12008001,+,MIRb,SINE,MIR,33,253,-15,12007742,12008016 +4 + chr2 12131389 12131570 chr2,12131389,12131570,-,MLT1J1,LTR,ERVL-MaLR,-240,204,22,12131149,12131591 -5 - chr2 12131563 12131585 chr2,12131563,12131645,+,MLT1A0,LTR,ERVL-MaLR,372,448,0,12131192,12131645 +5 + chr2 12561100 12561265 chr2,12560800,12561716,+,L1MA10,LINE,L1,5411,6333,-1,12555390,12561717 +5 + chr2 12578199 12578257 chr2,12578199,12578257,-,L2a,LINE,L2,-4,3422,3368,12578195,12581624 -6 - chr2 12599010 12599109 chr2,12599010,12599415,+,MLT1B,LTR,ERVL-MaLR,1,390,0,12599010,12599415 +4 + chr2 12602448 12602595 chr2,12602445,12602595,+,MER5B,DNA,hAT-Charlie,29,178,0,12602417,12602595 +2 + chr2 12715649 12715751 chr2,12715649,12715751,+,MER94,DNA,hAT-Blackjack,26,121,-13,12715624,12715764 +6 + chr2 12966907 12966979 chr2,12966907,12966979,+,MIRc,SINE,MIR,22,97,-171,12966886,12967150 -6 + chr2 12967899 12968033 chr2,12967899,12968331,+,LTR33,LTR,ERVL,25,459,-56,12967875,12968387 -2 + chr2 13003876 13003951 chr2,13003876,13003967,+,MIRc,SINE,MIR,111,199,-69,13003766,13004036 -2 + chr2 13537716 13538014 chr2,13537716,13538096,+,THE1D,LTR,ERVL-MaLR,1,381,0,13537716,13538096 +4 + chr2 13609056 13609168 chr2,13609006,13609356,+,L1MCb,LINE,L1,36,404,-5641,13608971,13614997 +5 + chr2 13710531 13710721 chr2,13710484,13710723,-,MLT1A0,LTR,ERVL-MaLR,0,365,99,13710484,13710821 +5 - chr2 13739187 13739284 chr2,13733270,13739284,-,L1PA3,LINE,L1,0,6155,124,13733270,13739407 +3 - chr2 13757559 13757888 chr2,13757545,13757888,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,13757545,13757888 -2 - chr2 13757888 13758152 chr2,13757888,13758153,-,L1MD,LINE,L1,-3234,2912,2662,13754654,13760814 -5 - chr2 14228877 14230773 chr2,14228877,14230773,-,L1PA15,LINE,L1,-2,6163,4193,14228875,14234965 +6 - chr2 14230777 14230954 chr2,14230777,14230954,+,THE1B,LTR,ERVL-MaLR,1,177,-187,14230777,14231141 -6 + chr2 14230982 14231335 chr2,14230982,14231335,-,L1MD,LINE,L1,-444,5798,5422,14230538,14236756 +6 - chr2 14231711 14231977 chr2,14231711,14231977,-,L3,LINE,CR1,-115,3984,3700,14231596,14235676 +6 - chr2 14235890 14235950 chr2,14235650,14236051,+,MSTA,LTR,ERVL-MaLR,1,428,0,14235650,14236051 -3 + chr2 14629987 14630113 chr2,14629874,14630113,-,MIR,SINE,MIR,0,262,3,14629874,14630115 -2 - chr2 14890535 14890795 chr2,14890535,14890824,+,AluSq2,SINE,Alu,1,284,-29,14890535,14890853 -2 + chr2 15565065 15565198 chr2,15564939,15565245,+,MLT1K,LTR,ERVL-MaLR,247,553,-42,15564693,15565287 +3 + chr2 15573484 15573553 chr2,15573399,15573918,+,LTR31,LTR,ERV1,104,604,-15,15573296,15573933 +5 + chr2 15573769 15573868 chr2,15573399,15573918,+,LTR31,LTR,ERV1,104,604,-15,15573296,15573933 +5 + chr2 15680271 15680484 chr2,15679875,15681090,-,SVA_D,Retroposon,SVA,-339,1047,1,15679536,15681090 +1 - chr2 15690944 15691098 chr2,15690884,15691307,-,MER115,DNA,hAT-Tip100,-237,456,1,15690647,15691307 -3 - chr2 15700390 15700535 chr2,15700208,15700543,+,MLT1L,LTR,ERVL-MaLR,197,532,-78,15700012,15700621 +1 + chr2 15701286 15701375 chr2,15701286,15701419,+,MIR1_Amn,SINE,MIR,3,150,-80,15701284,15701499 +4 + chr2 15708346 15708446 chr2,15708277,15708492,-,MIRb,SINE,MIR,-58,210,2,15708219,15708493 -3 - chr2 15715413 15715526 chr2,15715218,15715526,-,AluJo,SINE,Alu,-2,310,1,15715216,15715526 -2 - chr2 15717836 15718152 chr2,15717836,15718152,-,L2c,LINE,L2,-31,3356,2986,15717805,15721137 -6 - chr2 15718223 15718253 chr2,15718223,15718253,+,A-rich,Low_complexity,Low_complexity,1,30,0,15718223,15718253 +6 + chr2 15743489 15743523 chr2,15743111,15744440,-,L1MD2,LINE,L1,-2297,4247,2926,15740814,15747365 -5 - chr2 15744226 15744339 chr2,15743111,15744440,-,L1MD2,LINE,L1,-2297,4247,2926,15740814,15747365 -5 - chr2 15801747 15801906 chr2,15801651,15801906,-,MIRc,SINE,MIR,0,268,21,15801651,15801926 +5 - chr2 15920399 15920457 chr2,15920376,15920457,-,MER94,DNA,hAT-Blackjack,-1,133,53,15920375,15920509 -1 - chr2 15920612 15920798 chr2,15920612,15920798,-,L2a,LINE,L2,-104,3283,3084,15920508,15923881 -6 - chr2 15921068 15921122 chr2,15921068,15921213,-,L2b,LINE,L2,-6,3369,3211,15921062,15924423 +2 - chr2 15922021 15922190 chr2,15921984,15922221,+,L2c,LINE,L2,3124,3370,-17,15918861,15922238 -3 + chr2 15935774 15936017 chr2,15935510,15936124,-,L1ME3G,LINE,L1,-638,286,6,15934872,15936129 -5 - chr2 15936368 15936668 chr2,15936368,15936668,-,AluJb,SINE,Alu,-14,298,1,15936354,15936668 +6 - chr2 15936757 15936793 chr2,15936757,15936793,+,(TG)n,Simple_repeat,Simple_repeat,1,37,0,15936757,15936793 -6 + chr2 15936865 15936982 chr2,15936865,15936982,+,L2c,LINE,L2,3207,3330,-57,15933659,15937039 -6 + chr2 15937026 15937176 chr2,15937026,15937298,-,MSTD,LTR,ERVL-MaLR,0,396,76,15937026,15937373 +2 - chr2 15997395 15997412 chr2,15997395,15997461,+,L3b,LINE,CR1,4529,4594,-638,15992867,15998099 -2 + chr2 16062481 16062567 chr2,16062363,16062737,-,THE1C,LTR,ERVL-MaLR,-2,373,1,16062361,16062737 +3 - chr2 16062821 16062885 chr2,16062737,16064281,-,THE1C-int,LTR,ERVL-MaLR,0,1580,1,16062737,16064281 +1 - chr2 16080898 16081117 chr2,16080739,16081157,+,MLT2D,LTR,ERVL,3,414,0,16080737,16081157 +5 + chr2 16085770 16085801 chr2,16085770,16085948,+,L2c,LINE,L2,3128,3311,-76,16082643,16086024 +5 + chr2 16096442 16096747 chr2,16096442,16096747,-,AluSg,SINE,Alu,-4,306,2,16096438,16096748 +6 - chr2 16096802 16096926 chr2,16096802,16097029,-,MIRc,SINE,MIR,-7,261,9,16096795,16097037 +2 - chr2 16097439 16097462 chr2,16097439,16097791,-,THE1B,LTR,ERVL-MaLR,0,364,1,16097439,16097791 +2 - chr2 16105415 16105546 chr2,16105364,16105546,-,MIR,SINE,MIR,-37,231,1,16105327,16105546 +4 - chr2 16203716 16203794 chr2,16203716,16203794,-,Arthur1A,DNA,hAT-Tip100,-97,80,1,16203619,16203794 -6 - chr2 16228024 16228105 chr2,16227980,16228105,-,MIR,SINE,MIR,-84,124,1,16227896,16228105 -2 - chr2 16228059 16228105 chr2,16227980,16228105,-,MIR,SINE,MIR,-84,124,1,16227896,16228105 +4 - chr2 16228793 16228895 chr2,16228793,16228895,-,L2c,LINE,L2,0,3387,3294,16228793,16232188 -6 - chr2 16228894 16229140 chr2,16228894,16229296,+,L2c,LINE,L2,2971,3385,-2,16225924,16229298 +5 + chr2 16316326 16316428 chr2,16316326,16316428,+,MER5B,DNA,hAT-Charlie,18,117,-61,16316309,16316489 -6 + chr2 16354256 16354300 chr2,16354184,16354706,-,L1ME3F,LINE,L1,-1302,4844,4271,16352882,16358976 -1 - chr2 16355185 16355267 chr2,16355017,16355357,-,L1ME3F,LINE,L1,-1876,4270,3936,16353141,16359292 -1 - chr2 16431790 16431807 chr2,16431790,16432096,-,L2a,LINE,L2,0,3426,3012,16431790,16435107 -4 - chr2 16432589 16432702 chr2,16432589,16432785,+,MIRc,SINE,MIR,50,253,-15,16432540,16432800 +5 + chr2 16523176 16523238 chr2,16523100,16523238,-,MIR3,SINE,MIR,-20,188,55,16523080,16523292 -1 - chr2 16523225 16523388 chr2,16523225,16523388,+,MIRc,SINE,MIR,25,201,-67,16523201,16523455 +6 + chr2 16523402 16523489 chr2,16523402,16523626,-,MIR,SINE,MIR,-5,257,15,16523397,16523640 -4 - chr2 16524855 16524923 chr2,16524667,16524923,-,AluSx,SINE,Alu,-12,300,50,16524655,16524972 -2 - chr2 16524923 16524948 chr2,16524923,16524948,+,MER58D,DNA,hAT-Charlie,351,383,-3,16524573,16524951 +6 + chr2 16524952 16525037 chr2,16524952,16525071,+,L2b,LINE,L2,3253,3375,0,16521700,16525071 +4 + chr2 16527665 16527809 chr2,16527454,16530065,+,ERVL-E-int,LTR,ERVL,1108,3838,-1829,16526347,16531894 +5 + chr2 16529339 16529387 chr2,16527454,16530065,+,ERVL-E-int,LTR,ERVL,1108,3838,-1829,16526347,16531894 +5 + chr2 16728124 16728179 chr2,16727942,16728298,+,THE1D,LTR,ERVL-MaLR,1,381,0,16727942,16728298 +1 + chr2 16767016 16767403 chr2,16766883,16767403,+,MLT1F2,LTR,ERVL-MaLR,58,559,-1,16766826,16767404 +2 + chr2 16971430 16971532 chr2,16971241,16971614,+,THE1C,LTR,ERVL-MaLR,1,375,0,16971241,16971614 +3 + chr2 16974472 16974497 chr2,16974472,16974546,-,MIR3,SINE,MIR,-50,158,83,16974422,16974628 -5 - chr2 18547718 18547852 chr2,18547718,18547852,-,Tigger13a,DNA,TcMar-Tigger,-38,733,598,18547680,18548449 +6 - chr2 18547924 18548120 chr2,18547924,18548120,+,Tigger1,DNA,TcMar-Tigger,1,184,-2234,18547924,18550354 -6 + chr2 18548120 18548204 chr2,18548120,18548411,+,AluY,SINE,Alu,1,291,-20,18548120,18548431 -1 + chr2 18784807 18784915 chr2,18784735,18785425,-,L1MD,LINE,L1,-1934,4212,3523,18782801,18788947 -1 - chr2 18787494 18787507 chr2,18787430,18787507,+,MIRc,SINE,MIR,114,193,-75,18787317,18787582 +2 + chr2 18787574 18787752 chr2,18787574,18787783,+,L2c,LINE,L2,3127,3342,-45,18784448,18787828 +5 + chr2 18986776 18986801 chr2,18986776,18986801,+,(AATG)n,Simple_repeat,Simple_repeat,1,25,0,18986776,18986801 -6 + chr2 18987081 18987275 chr2,18987081,18987275,-,MIRb,SINE,MIR,-69,199,13,18987012,18987287 +6 - chr2 18995319 18995364 chr2,18995206,18995455,-,LTR32,LTR,ERVL,0,457,218,18995206,18995672 +3 - chr2 19026641 19026788 chr2,19026567,19026788,+,UCON84,Unknown,Unknown,492,714,-13,19026076,19026801 -5 + chr2 19065981 19066018 chr2,19065858,19066018,-,L1MA7,LINE,L1,-2,6289,6130,19065856,19072147 +4 - chr2 19066018 19066134 chr2,19066018,19066316,+,AluJb,SINE,Alu,1,293,-19,19066018,19066335 -2 + chr2 19084927 19085025 chr2,19084905,19085046,+,AluJr,SINE,Alu,137,302,-10,19084769,19085056 -3 + chr2 19305839 19306054 chr2,19305839,19311862,+,L1PA2,LINE,L1,125,6153,-2,19305715,19311864 -1 + chr2 19346644 19346748 chr2,19346482,19346769,+,AluJb,SINE,Alu,1,284,-28,19346482,19346797 -1 + chr2 19459050 19459162 chr2,19459050,19459162,+,MIR3,SINE,MIR,69,183,-25,19458982,19459187 -6 + chr2 19468356 19468442 chr2,19468356,19468442,-,Tigger19a,DNA,TcMar-Tigger,-24,299,213,19468332,19468654 +6 - chr2 19468586 19468724 chr2,19468586,19468724,-,AluYa5,SINE,Alu,-8,303,166,19468578,19468889 +6 - chr2 19468897 19468961 chr2,19468897,19469356,-,MLT1G1,LTR,ERVL-MaLR,-3,592,72,19468894,19469427 +1 - chr2 19475450 19475612 chr2,19475284,19475688,+,MLT1B,LTR,ERVL-MaLR,1,390,0,19475284,19475688 +1 + chr2 19488584 19488632 chr2,19488584,19488632,+,MIR1_Amn,SINE,MIR,109,157,-73,19488476,19488705 +6 + chr2 19711715 19711745 chr2,19711592,19711745,+,UCON78,DNA,DNA,128,289,-154,19711465,19711899 +1 + chr2 19717262 19717513 chr2,19717162,19717513,+,MLT1C,LTR,ERVL-MaLR,95,464,-3,19717068,19717516 +2 + chr2 19717540 19717576 chr2,19717540,19717820,+,L2,LINE,L2,2136,2458,-961,19715405,19718781 +5 + chr2 19876489 19876530 chr2,19876489,19876530,-,Penelope1_Vert,LINE,Penelope,-116,971,925,19876373,19877454 -6 - chr2 19876868 19876922 chr2,19876868,19876922,-,MIR3,SINE,MIR,-119,89,35,19876749,19876956 -6 - chr2 19877105 19877406 chr2,19877105,19877406,+,AluSz6,SINE,Alu,8,295,-17,19877098,19877423 +5 + chr2 19877415 19877535 chr2,19877415,19877718,+,AluSq2,SINE,Alu,1,305,-8,19877415,19877726 +5 + chr2 20004088 20004192 chr2,20004088,20004192,-,UCON8,DNA,DNA,-197,918,815,20003891,20005006 -6 - chr2 20054285 20054305 chr2,20053988,20054305,+,LTR32,LTR,ERVL,8,317,-140,20053981,20054445 +2 + chr2 20054406 20054496 chr2,20054406,20054572,+,LTR32,LTR,ERVL,305,457,0,20054102,20054572 +5 + chr2 20063979 20064040 chr2,20063979,20064040,+,(TGTA)n,Simple_repeat,Simple_repeat,1,61,0,20063979,20064040 -6 + chr2 20064040 20064137 chr2,20064040,20064137,-,AluSc,SINE,Alu,-27,282,186,20064013,20064322 +6 - chr2 20064174 20064379 chr2,20064174,20064379,+,MIR3,SINE,MIR,4,201,-7,20064171,20064386 -6 + chr2 20064468 20064511 chr2,20064468,20064580,+,MIR3,SINE,MIR,82,200,-8,20064387,20064588 -2 + chr2 20106740 20106829 chr2,20105981,20107080,-,LTR12D,LTR,ERV1,-113,1141,1,20105868,20107080 +1 - chr2 20500049 20500110 chr2,20500049,20500267,-,L2b,LINE,L2,-95,3280,3085,20499954,20503351 +2 - chr2 20501251 20501311 chr2,20501251,20502198,-,LTR5A,LTR,ERVK,-83,950,1,20501168,20502198 +1 - chr2 20590775 20590875 chr2,20590772,20590875,-,MIRb,SINE,MIR,-79,189,87,20590693,20590961 +5 - chr2 20592422 20592548 chr2,20592378,20592550,+,L2a,LINE,L2,2658,2864,-555,20589721,20593105 -1 + chr2 20677966 20677986 chr2,20677966,20677986,+,(GCA)n,Simple_repeat,Simple_repeat,1,20,0,20677966,20677986 +6 + chr2 20859797 20859957 chr2,20859797,20859992,-,L2c,LINE,L2,-221,3166,2959,20859576,20862950 -4 - chr2 20860355 20860533 chr2,20860355,20860533,+,MIRc,SINE,MIR,21,203,-65,20860335,20860598 +6 + chr2 20999724 20999752 chr2,20999724,20999752,+,(CCAT)n,Simple_repeat,Simple_repeat,1,28,0,20999724,20999752 -6 + chr2 20999858 20999906 chr2,20999858,20999906,-,UCON132b,DNA,hAT-Tip100,-48,100,53,20999810,20999958 +6 - chr2 21023926 21023986 chr2,21023926,21023986,-,Tigger14a,DNA,TcMar-Tigger,-182,142,79,21023744,21024064 -6 - chr2 21221176 21221294 chr2,21221176,21221371,+,MIRb,SINE,MIR,1,209,-59,21221176,21221430 +1 + chr2 21263981 21264086 chr2,21263981,21264144,+,MIRc,SINE,MIR,79,236,-32,21263903,21264176 +5 + chr2 21317660 21317813 chr2,21317605,21318633,+,LTR78,LTR,ERV1,180,1292,-4,21317426,21318637 +1 + chr2 21320417 21320452 chr2,21320417,21320452,-,L2c,LINE,L2,-69,3318,3283,21320348,21323734 -6 - chr2 21396583 21396762 chr2,21396566,21396762,+,LTR16,LTR,ERVL,1,195,-243,21396566,21397005 +1 + chr2 21396845 21396884 chr2,21396845,21397430,+,ERV3-16A3_I-int,LTR,ERVL,852,1463,-3763,21395994,21401193 +4 + chr2 21403001 21403152 chr2,21403001,21403152,+,L2c,LINE,L2,3170,3320,-67,21399832,21403219 +6 + chr2 21529213 21529243 chr2,21528720,21529582,-,L1ME1,LINE,L1,-45,6134,5286,21528675,21534867 -3 - chr2 21561293 21561313 chr2,21560777,21561776,-,L1MC5,LINE,L1,-15,9289,8229,21560762,21570004 -5 - chr2 21636043 21636144 chr2,21636002,21637196,+,L2a,LINE,L2,1646,2960,-459,21634357,21637655 -1 + chr2 21636269 21636309 chr2,21636002,21637196,+,L2a,LINE,L2,1646,2960,-459,21634357,21637655 -1 + chr2 21638431 21638538 chr2,21638417,21638861,+,LTR33,LTR,ERVL,39,496,-19,21638379,21638880 -5 + chr2 21649404 21649563 chr2,21649404,21649584,+,MIR3,SINE,MIR,19,205,-3,21649386,21649587 -1 + chr2 21687434 21687644 chr2,21687273,21687644,-,L1MB8,LINE,L1,-200,5978,5620,21687073,21693263 +5 - chr2 21687657 21687818 chr2,21687657,21687818,-,MIRb,SINE,MIR,-91,177,1,21687566,21687818 +6 - chr2 21710595 21710623 chr2,21710475,21710819,-,THE1C,LTR,ERVL-MaLR,0,375,1,21710475,21710819 +1 - chr2 21799357 21799478 chr2,21799156,21799555,+,MLT1A,LTR,ERVL-MaLR,4,374,0,21799153,21799555 +3 + chr2 21951632 21951678 chr2,21951629,21951678,+,GA-rich,Low_complexity,Low_complexity,1,50,0,21951629,21951678 +2 + chr2 21970845 21970856 chr2,21970656,21970856,+,LTR33A,LTR,ERVL,322,517,-3,21970335,21970859 +2 + chr2 22481718 22481899 chr2,22481718,22481899,-,MIRb,SINE,MIR,-24,244,50,22481694,22481948 -6 - chr2 22536479 22536525 chr2,22536474,22536545,-,L2a,LINE,L2,-1,3425,3354,22536473,22539898 -1 - chr2 22537005 22537039 chr2,22536809,22537039,+,L2c,LINE,L2,3130,3374,-13,22533680,22537052 +2 + chr2 23018125 23018255 chr2,23017995,23018269,+,Charlie4a,DNA,hAT-Charlie,219,495,-13,23017777,23018282 -5 + chr2 23020284 23020392 chr2,23020229,23020561,-,L2c,LINE,L2,-125,3262,2921,23020104,23023481 +3 - chr2 23027109 23027409 chr2,23027057,23027525,-,MLT2C2,LTR,ERVL,0,464,1,23027057,23027525 +5 - chr2 23375258 23375460 chr2,23375258,23375634,-,MLT1J1,LTR,ERVL-MaLR,-2,442,47,23375256,23375680 +5 - chr2 23375598 23375634 chr2,23375258,23375634,-,MLT1J1,LTR,ERVL-MaLR,-2,442,47,23375256,23375680 +5 - chr2 23375650 23375684 chr2,23375650,23375715,-,MLT1J1,LTR,ERVL-MaLR,-350,94,20,23375300,23375734 +2 - chr2 23376281 23376329 chr2,23376281,23376742,-,L3,LINE,CR1,-1718,2381,1889,23374563,23378630 +2 - chr2 23376784 23376926 chr2,23376742,23377205,+,MLT1F,LTR,ERVL-MaLR,1,548,0,23376742,23377205 -3 + chr2 23380124 23380241 chr2,23379963,23380259,+,AluSz,SINE,Alu,1,293,-19,23379963,23380278 -3 + chr2 23381243 23381299 chr2,23381243,23381300,+,L2b,LINE,L2,3318,3372,-3,23377926,23381303 -1 + chr2 23524079 23524260 chr2,23524079,23524260,-,MIRc,SINE,MIR,-70,198,8,23524009,23524267 +6 - chr2 23616586 23616804 chr2,23616586,23616804,-,MIRb,SINE,MIR,0,268,42,23616586,23616845 +6 - chr2 24165884 24166039 chr2,24165759,24166055,+,AluSp,SINE,Alu,1,296,-17,24165759,24166072 -5 + chr2 24166518 24166563 chr2,24166518,24167370,-,L2a,LINE,L2,-15,3411,2462,24166503,24169831 +2 - chr2 24167820 24167955 chr2,24167421,24167955,-,LTR78,LTR,ERV1,-20,1284,711,24167401,24168665 +4 - chr2 24169949 24170124 chr2,24169908,24170140,+,AluSz6,SINE,Alu,64,295,-17,24169845,24170157 -5 + chr2 24174508 24174628 chr2,24174499,24174628,-,L1MC5,LINE,L1,-265,9039,8908,24174234,24183535 +4 - chr2 24199839 24199867 chr2,24199499,24199867,-,L1MA9,LINE,L1,-816,5496,5125,24198683,24204991 +5 - chr2 24200017 24200109 chr2,24200017,24200327,-,MLT1J1,LTR,ERVL-MaLR,-133,311,5,24199884,24200331 +2 - chr2 24214381 24214425 chr2,24214134,24214433,-,L1MD,LINE,L1,-2331,3815,3499,24211803,24217931 -1 - chr2 24220773 24220873 chr2,24220750,24220873,-,MamTip2,DNA,hAT-Tip100,-182,123,1,24220568,24220873 -2 - chr2 24221409 24221516 chr2,24221409,24221614,+,MER112,DNA,hAT-Charlie,9,254,-7,24221401,24221621 +5 + chr2 24826523 24826717 chr2,24826523,24827087,-,L1ME3B,LINE,L1,-387,5855,5294,24826136,24832380 -5 - chr2 25003985 25004110 chr2,25003921,25004173,-,MLT1K,LTR,ERVL-MaLR,-160,435,170,25003761,25004342 -3 - chr2 25027311 25027517 chr2,25027218,25027602,+,ERVL-B4-int,LTR,ERVL,2386,2771,-2896,25024833,25030498 +5 + chr2 25028549 25028640 chr2,25028364,25028660,-,AluJb,SINE,Alu,-12,300,1,25028352,25028660 -3 - chr2 25035273 25035324 chr2,25035064,25035324,-,L3,LINE,CR1,-2969,1130,840,25032095,25036163 -2 - chr2 25036034 25036158 chr2,25036034,25036158,+,MIR3,SINE,MIR,2,127,-103,25036033,25036261 +6 + chr2 25036978 25037211 chr2,25036978,25037211,+,MIR,SINE,MIR,1,251,-11,25036978,25037222 +6 + chr2 25037413 25037461 chr2,25037413,25037461,+,(TGTT)n,Simple_repeat,Simple_repeat,1,50,0,25037413,25037461 +6 + chr2 25037461 25037749 chr2,25037461,25037749,-,AluSg7,SINE,Alu,-22,287,1,25037439,25037749 -6 - chr2 25038253 25038396 chr2,25038253,25038396,-,MER53,DNA,hAT,-4,189,29,25038249,25038424 -6 - chr2 25038396 25038610 chr2,25038396,25038610,-,AluSx1,SINE,Alu,-17,295,82,25038379,25038691 -6 - chr2 25038658 25038967 chr2,25038658,25038967,-,MER21A,LTR,ERVL,-6,925,594,25038652,25039560 -6 - chr2 25039123 25039499 chr2,25039123,25039499,+,MER21A,LTR,ERVL,1,419,-449,25039123,25039948 +6 + chr2 25209130 25209202 chr2,25209130,25209287,+,AluJb,SINE,Alu,72,227,-85,25209059,25209372 +5 + chr2 25370345 25370687 chr2,25370345,25371122,+,MER4E1,LTR,ERV1,1,781,0,25370345,25371122 -1 + chr2 25426586 25426715 chr2,25426153,25426800,+,MLT2B3,LTR,ERVL,1,554,0,25426153,25426800 +3 + chr2 26671288 26671501 chr2,26671288,26671501,+,MIR3,SINE,MIR,3,208,0,26671286,26671501 -6 + chr2 26671523 26671673 chr2,26671523,26671726,+,MIRc,SINE,MIR,4,241,-27,26671520,26671753 -2 + chr2 26986513 26986541 chr2,26986436,26986541,+,X7C_LINE,LINE,CR1,7,123,-113,26986430,26986654 -4 + chr2 26995476 26995554 chr2,26995357,26995683,+,L1MC4,LINE,L1,6794,7114,-928,26988564,26996611 -3 + chr2 27009776 27009807 chr2,27009755,27010030,+,L2b,LINE,L2,3070,3348,-27,27006686,27010057 -1 + chr2 27011769 27011868 chr2,27011563,27011868,+,AluSz,SINE,Alu,1,305,-7,27011563,27011875 -5 + chr2 27011927 27012235 chr2,27011927,27012235,+,AluSg,SINE,Alu,1,310,0,27011927,27012235 -6 + chr2 27012337 27012481 chr2,27012337,27012481,+,MIRc,SINE,MIR,6,156,-112,27012332,27012593 -6 + chr2 27012511 27012654 chr2,27012511,27012654,-,MamTip2,DNA,hAT-Tip100,-154,151,1,27012357,27012654 +6 - chr2 27013896 27014045 chr2,27013896,27014045,-,MIR,SINE,MIR,-69,193,35,27013827,27014079 +1 - chr2 27061050 27061206 chr2,27061050,27061230,-,AluSx,SINE,Alu,0,312,136,27061050,27061365 -4 - chr2 27061646 27061667 chr2,27061533,27061667,-,AluSx,SINE,Alu,-177,135,1,27061356,27061667 -2 - chr2 27337605 27337760 chr2,27337605,27337760,+,MER3,DNA,hAT-Charlie,3,156,-53,27337603,27337813 +6 + chr2 27339584 27339618 chr2,27339438,27339618,-,MER96B,DNA,hAT-Tip100,-234,183,18,27339204,27339635 -2 - chr2 27339618 27339705 chr2,27339618,27339705,+,L2c,LINE,L2,2387,2466,-953,27337232,27340658 +6 + chr2 27339705 27340008 chr2,27339705,27340016,+,AluSz,SINE,Alu,2,312,0,27339704,27340016 +5 + chr2 27340266 27340373 chr2,27340251,27340533,-,AluSz,SINE,Alu,-19,293,1,27340232,27340533 -3 - chr2 27340648 27340824 chr2,27340628,27340924,-,AluSx3,SINE,Alu,-18,293,2,27340610,27340925 -5 - chr2 27341537 27341721 chr2,27341537,27341721,+,L2c,LINE,L2,3092,3277,-110,27338446,27341831 +6 + chr2 27342306 27342497 chr2,27342306,27342497,-,MIRc,SINE,MIR,-62,206,9,27342244,27342505 -6 - chr2 27357808 27357922 chr2,27357789,27357922,-,AluJr4,SINE,Alu,-179,133,1,27357610,27357922 -2 - chr2 27357922 27358195 chr2,27357922,27358195,-,L1ME4b,LINE,L1,-289,603,339,27357633,27358533 -5 - chr2 27358247 27358272 chr2,27358247,27358272,+,(TGTT)n,Simple_repeat,Simple_repeat,1,25,0,27358247,27358272 +6 + chr2 27358272 27358544 chr2,27358272,27358544,-,AluJo,SINE,Alu,-29,283,1,27358243,27358544 -6 - chr2 27358725 27358765 chr2,27358725,27358765,+,(CTCTACCT)n,Simple_repeat,Simple_repeat,1,42,0,27358725,27358765 +6 + chr2 27358783 27360255 chr2,27358783,27360255,+,SVA_F,Retroposon,SVA,47,1375,0,27358737,27360255 +6 + chr2 27621210 27621262 chr2,27621210,27621262,+,(AGC)n,Simple_repeat,Simple_repeat,1,54,0,27621210,27621262 +4 + chr2 27705786 27705897 chr2,27705774,27705897,+,MER113A,DNA,hAT-Charlie,183,310,-4,27705592,27705901 -5 + chr2 27705897 27706064 chr2,27705897,27706064,+,MIRc,SINE,MIR,9,178,-90,27705889,27706154 -6 + chr2 27706749 27707043 chr2,27706749,27707043,-,AluSx1,SINE,Alu,-17,295,1,27706732,27707043 +6 - chr2 27707152 27707210 chr2,27707152,27707210,-,L2a,LINE,L2,0,3426,3332,27707152,27710541 +6 - chr2 27707343 27707524 chr2,27707343,27707524,-,Charlie19a,DNA,hAT-Charlie,-74,312,128,27707269,27707651 +6 - chr2 27708094 27708260 chr2,27708094,27708260,+,MIR3,SINE,MIR,12,186,-22,27708083,27708282 -6 + chr2 28307691 28307755 chr2,28307306,28307755,-,L1ME2,LINE,L1,-4061,2339,1886,28303245,28309640 +5 - chr2 28307981 28308149 chr2,28307981,28308149,-,MIRc,SINE,MIR,-53,215,46,28307928,28308194 +6 - chr2 28308739 28308928 chr2,28308739,28308928,+,MIRb,SINE,MIR,1,196,-72,28308739,28309000 -6 + chr2 28308929 28309324 chr2,28308929,28309324,-,MLT1E3,LTR,ERVL-MaLR,0,624,221,28308929,28309544 +6 - chr2 28309371 28309489 chr2,28309371,28309489,-,MLT1E3,LTR,ERVL-MaLR,-502,151,2,28308869,28309490 +6 - chr2 28384409 28384563 chr2,28384376,28384563,-,L1MC5a,LINE,L1,-154,2623,2439,28384222,28387001 +5 - chr2 28384810 28385010 chr2,28384810,28385010,-,L3,LINE,CR1,-171,3928,3735,28384639,28388744 +6 - chr2 28385433 28385742 chr2,28385433,28385742,+,AluSg,SINE,Alu,1,309,-1,28385433,28385743 -6 + chr2 28385786 28386009 chr2,28385786,28386009,-,MLT1K,LTR,ERVL-MaLR,-11,584,356,28385775,28386364 +6 - chr2 28386021 28386283 chr2,28386021,28386283,-,MLT1K,LTR,ERVL-MaLR,-286,309,46,28385735,28386328 +6 - chr2 28386311 28386540 chr2,28386311,28386540,+,MIR,SINE,MIR,29,261,-1,28386283,28386541 -6 + chr2 28386973 28387123 chr2,28386973,28387123,-,MIR3,SINE,MIR,-47,161,16,28386926,28387138 +6 - chr2 28396815 28396838 chr2,28396789,28396838,+,(AC)n,Simple_repeat,Simple_repeat,1,49,0,28396789,28396838 +1 + chr2 28426066 28426201 chr2,28426066,28426201,+,L2c,LINE,L2,2834,2962,-457,28423233,28426658 +6 + chr2 28426345 28426441 chr2,28426345,28426441,-,L2b,LINE,L2,-1,3374,3271,28426344,28429711 -6 - chr2 28426458 28426618 chr2,28426458,28426618,+,L2c,LINE,L2,3137,3299,-88,28423322,28426706 +6 + chr2 28426674 28426719 chr2,28426674,28426900,-,BLACKJACK,DNA,hAT-Blackjack,-1664,1305,1083,28425010,28427982 -5 - chr2 28448178 28448241 chr2,28448178,28448241,+,L2c,LINE,L2,3321,3386,-1,28444858,28448242 -6 + chr2 28448327 28448499 chr2,28448327,28448499,-,MER121,DNA,hAT?,-119,282,104,28448208,28448602 +6 - chr2 28450071 28450131 chr2,28450071,28450131,+,(CTC)n,Simple_repeat,Simple_repeat,1,61,0,28450071,28450131 -6 + chr2 28633305 28633403 chr2,28633305,28633495,+,MIRb,SINE,MIR,37,243,-25,28633269,28633520 -2 + chr2 28664229 28664540 chr2,28664229,28664729,+,LTR18B,LTR,ERVL,1,572,-42,28664229,28664771 -1 + chr2 28722440 28722482 chr2,28722242,28722482,+,Zaphod,DNA,hAT-Tip100,743,990,-3041,28721500,28725523 -5 + chr2 28722481 28722732 chr2,28722481,28722732,+,Zaphod,DNA,hAT-Tip100,3596,3870,-161,28718886,28722893 -6 + chr2 28722732 28723006 chr2,28722732,28723036,+,AluSx3,SINE,Alu,1,304,-7,28722732,28723043 -2 + chr2 28731911 28731983 chr2,28731785,28732062,-,MamRep605,LTR?,LTR?,-143,706,422,28731642,28732483 +3 - chr2 28810297 28810364 chr2,28810297,28810364,-,L2c,LINE,L2,0,3387,3315,28810297,28813678 +6 - chr2 28810645 28810706 chr2,28810645,28810719,+,(GCGG)n,Simple_repeat,Simple_repeat,1,76,0,28810645,28810719 -1 + chr2 29890585 29890700 chr2,29890585,29890700,-,MIRc,SINE,MIR,-19,249,135,29890566,29890834 -6 - chr2 29890929 29890985 chr2,29890929,29891102,+,MIRb,SINE,MIR,43,219,-49,29890887,29891151 +4 + chr2 29899597 29899723 chr2,29899544,29899854,+,AluSc8,SINE,Alu,1,310,-1,29899544,29899855 +1 + chr2 30119830 30119849 chr2,30119830,30119952,+,MIRc,SINE,MIR,116,252,-16,30119715,30119968 -2 + chr2 30132354 30132643 chr2,30132354,30132644,-,AluJb,SINE,Alu,-10,302,1,30132344,30132644 +2 - chr2 30136279 30136350 chr2,30136279,30136361,-,L4_C_Mam,LINE,RTE-X,-406,4732,4650,30135873,30141010 +1 - chr2 30140640 30140785 chr2,30140483,30140785,+,AluSc8,SINE,Alu,1,304,-7,30140483,30140792 -1 + chr2 30140987 30141344 chr2,30140987,30141344,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,30140987,30141344 -6 + chr2 30141409 30141456 chr2,30141409,30141456,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,30141409,30141456 -6 + chr2 30142317 30142451 chr2,30142317,30142451,+,AluJo,SINE,Alu,1,133,-179,30142317,30142630 -6 + chr2 30142658 30142826 chr2,30142658,30142826,+,L1ME3G,LINE,L1,3805,3975,-2171,30138854,30144997 -6 + chr2 30142817 30142889 chr2,30142817,30142889,+,L1M5,LINE,L1,5626,5699,-425,30137192,30143314 -6 + chr2 30142905 30143216 chr2,30142905,30143216,+,AluSc8,SINE,Alu,1,311,0,30142905,30143216 -6 + chr2 30143216 30143398 chr2,30143216,30143398,+,L1ME3G,LINE,L1,4159,4397,-1749,30139058,30145147 -6 + chr2 30143398 30143804 chr2,30143398,30143812,-,MLT1B,LTR,ERVL-MaLR,0,390,1,30143398,30143812 +1 - chr2 30347065 30347115 chr2,30347065,30347168,+,MIRc,SINE,MIR,49,151,-117,30347017,30347285 +4 + chr2 30350191 30350326 chr2,30350191,30350326,+,FLAM_C,SINE,Alu,1,133,-10,30350191,30350336 +6 + chr2 30350426 30350630 chr2,30350426,30350630,+,MIR,SINE,MIR,15,235,-27,30350412,30350657 +6 + chr2 30350651 30350960 chr2,30350651,30350960,-,AluJb,SINE,Alu,-4,308,1,30350647,30350960 -6 - chr2 30350973 30351053 chr2,30350973,30351053,+,MIRb,SINE,MIR,193,268,0,30350781,30351053 +6 + chr2 30352178 30352394 chr2,30352178,30352394,+,MLT1O,LTR,ERVL-MaLR,54,308,-234,30352125,30352628 +6 + chr2 30352405 30352431 chr2,30352405,30352584,+,MIR,SINE,MIR,34,250,-12,30352372,30352596 +5 + chr2 30408245 30408287 chr2,30408245,30408287,+,(GT)n,Simple_repeat,Simple_repeat,1,42,0,30408245,30408287 +6 + chr2 30677828 30677899 chr2,30677828,30677899,-,MER58C,DNA,hAT-Charlie,-4,211,140,30677824,30678038 -6 - chr2 30677902 30677936 chr2,30677902,30677936,+,(TCTCTG)n,Simple_repeat,Simple_repeat,1,34,0,30677902,30677936 +6 + chr2 30678838 30678925 chr2,30678838,30678925,-,LTR78B,LTR,ERV1,-1207,89,1,30677631,30678925 -6 - chr2 30679056 30679182 chr2,30679056,30679182,+,MIRb,SINE,MIR,137,262,-6,30678920,30679188 +6 + chr2 30679213 30679337 chr2,30679213,30679337,+,MIRb,SINE,MIR,122,252,-16,30679092,30679353 +6 + chr2 30679554 30679694 chr2,30679554,30679694,+,MIR3,SINE,MIR,16,168,-40,30679539,30679734 +6 + chr2 30987036 30987047 chr2,30987036,30987125,-,MIR3,SINE,MIR,-34,174,82,30987002,30987206 -4 - chr2 30991315 30991372 chr2,30991315,30991372,+,(TCTCCTG)n,Simple_repeat,Simple_repeat,1,60,0,30991315,30991372 +6 + chr2 31526942 31527045 chr2,31526733,31527206,+,MLT1C,LTR,ERVL-MaLR,1,467,0,31526733,31527206 +1 + chr2 31563322 31563464 chr2,31563322,31566553,+,L1MEc,LINE,L1,34,3515,-2804,31563289,31569357 +5 + chr2 31793823 31793915 chr2,31793780,31794128,-,MLT1J2,LTR,ERVL-MaLR,-13,398,25,31793767,31794152 +5 - chr2 31802947 31802967 chr2,31802565,31802967,+,MLT1L,LTR,ERVL-MaLR,173,610,0,31802393,31802967 -4 + chr2 31803005 31803115 chr2,31803005,31803314,+,AluSx1,SINE,Alu,1,309,-3,31803005,31803317 -2 + chr2 31803958 31803980 chr2,31803543,31804882,+,LTR12C,LTR,ERV1,10,1579,0,31803534,31804882 -1 + chr2 31852994 31853066 chr2,31852994,31853066,-,MLT1F2,LTR,ERVL-MaLR,-477,83,14,31852517,31853079 +6 - chr2 31853257 31853328 chr2,31853257,31853328,-,MADE2,DNA,TcMar-Mariner,-2,78,8,31853255,31853335 +6 - chr2 32013061 32013226 chr2,32013012,32013226,+,MIRc,SINE,MIR,35,267,-1,32012978,32013227 +1 + chr2 32165156 32165211 chr2,32165156,32165211,+,MIRb,SINE,MIR,52,106,-162,32165105,32165373 -6 + chr2 32165211 32165503 chr2,32165211,32165503,-,AluSz,SINE,Alu,-18,294,2,32165193,32165504 +6 - chr2 32165503 32165604 chr2,32165503,32165604,+,MIRb,SINE,MIR,107,221,-47,32165397,32165651 -6 + chr2 32321638 32321683 chr2,32321458,32321683,-,L1M5,LINE,L1,-599,5643,5386,32320859,32327068 -1 - chr2 32321707 32321762 chr2,32321707,32321762,-,FRAM,SINE,Alu,-23,153,101,32321684,32321862 -6 - chr2 32321773 32321842 chr2,32321773,32321842,+,LTR32,LTR,ERVL,10,73,-384,32321764,32322226 +6 + chr2 32321861 32322103 chr2,32321861,32322103,+,LTR32,LTR,ERVL,218,457,0,32321644,32322103 +6 + chr2 32322103 32322322 chr2,32322103,32322322,-,AluJo,SINE,Alu,-71,241,42,32322032,32322363 -6 - chr2 32322322 32322622 chr2,32322322,32322622,+,AluYe5,SINE,Alu,1,299,-11,32322322,32322633 +6 + chr2 32322622 32322664 chr2,32322622,32322664,-,AluJo,SINE,Alu,-271,41,1,32322351,32322664 -6 - chr2 32322720 32323002 chr2,32322720,32323026,+,AluSq2,SINE,Alu,1,313,0,32322720,32323026 +5 + chr2 32379537 32379599 chr2,32379537,32379634,-,L3,LINE,CR1,-384,3715,3618,32379153,32383251 +1 - chr2 32521927 32522124 chr2,32521817,32522124,-,L1MEc,LINE,L1,-4921,1479,1137,32516896,32523260 -1 - chr2 32522200 32522445 chr2,32522200,32522445,-,L1MEc,LINE,L1,-5421,994,643,32516779,32523087 -6 - chr2 32522753 32523145 chr2,32522753,32523145,-,L1MEc,LINE,L1,-5909,491,57,32516844,32523201 -6 - chr2 32523196 32523246 chr2,32523196,32523246,+,A-rich,Low_complexity,Low_complexity,1,53,0,32523196,32523246 +6 + chr2 32526504 32528220 chr2,32526069,32528220,+,Tigger4,DNA,TcMar-Tigger,1,2238,-493,32526069,32528713 +1 + chr2 32528220 32528522 chr2,32528220,32528522,-,AluSq2,SINE,Alu,-10,303,2,32528210,32528523 -6 - chr2 32528522 32529020 chr2,32528522,32529020,+,Tigger4,DNA,TcMar-Tigger,2239,2730,-1,32526284,32529021 +6 + chr2 32529155 32529225 chr2,32529155,32529225,-,BSR/Beta,Satellite,Satellite,-33,109,45,32529122,32529269 -6 - chr2 32529209 32529375 chr2,32529209,32529375,+,MER58A,DNA,hAT-Charlie,34,209,-15,32529176,32529390 +6 + chr2 32548675 32548789 chr2,32548500,32548789,+,AluSq2,SINE,Alu,2,290,-23,32548499,32548812 +1 + chr2 32557786 32557828 chr2,32557786,32557828,+,(TTC)n,Simple_repeat,Simple_repeat,1,43,0,32557786,32557828 -6 + chr2 32563640 32563796 chr2,32563640,32563796,-,L1MB8,LINE,L1,-5,6173,6031,32563635,32569826 -6 - chr2 32563796 32564099 chr2,32563796,32564099,+,AluSq2,SINE,Alu,1,304,-9,32563796,32564108 +6 + chr2 32564099 32564507 chr2,32564099,32564507,-,L1MB8,LINE,L1,-148,6030,5614,32563951,32570120 -6 - chr2 32564507 32564675 chr2,32564507,32564675,-,L1MB8,LINE,L1,-688,5490,5324,32563819,32569998 -6 - chr2 32564667 32565125 chr2,32564667,32565125,-,L1M4b,LINE,L1,-6402,465,30,32558265,32565154 -6 - chr2 32565571 32565639 chr2,32565571,32565639,-,L1ME4b,LINE,L1,-127,765,695,32565444,32566333 -6 - chr2 32565639 32566007 chr2,32565639,32566007,-,THE1C,LTR,ERVL-MaLR,-2,373,1,32565637,32566007 -6 - chr2 32566007 32566026 chr2,32566007,32566026,-,L1ME4b,LINE,L1,-198,694,673,32565809,32566698 -6 - chr2 32566271 32566347 chr2,32566271,32566347,-,AluJb,SINE,Alu,-21,291,216,32566250,32566562 -6 - chr2 32566378 32566436 chr2,32566378,32566651,-,AluJr,SINE,Alu,-31,281,2,32566347,32566652 -5 - chr2 32574583 32574755 chr2,32574417,32574755,-,Tigger2a,DNA,TcMar-Tigger,-59,375,1,32574358,32574755 +4 - chr2 32574758 32574818 chr2,32574758,32575047,-,AluSp,SINE,Alu,-23,290,1,32574735,32575047 +1 - chr2 32841013 32841135 chr2,32840905,32841135,-,MIR,SINE,MIR,-18,244,8,32840887,32841142 -1 - chr2 32841155 32841233 chr2,32841155,32841255,+,MIRb,SINE,MIR,170,268,0,32840986,32841255 +4 + chr2 32896925 32896979 chr2,32896585,32897059,+,MSTD,LTR,ERVL-MaLR,1,396,0,32896585,32897059 +3 + chr2 32902063 32902123 chr2,32902058,32902186,-,MIR,SINE,MIR,-126,136,7,32901932,32902192 -5 - chr2 32925353 32925370 chr2,32925265,32925370,-,L2b,LINE,L2,-20,3367,3275,32925245,32928644 -2 - chr2 32925913 32925986 chr2,32925913,32925986,+,L3,LINE,CR1,3989,4073,-26,32921925,32926012 +6 + chr2 32926167 32926385 chr2,32926167,32926385,+,MER58A,DNA,hAT-Charlie,1,220,-4,32926167,32926389 +6 + chr2 32927168 32927346 chr2,32927168,32927442,-,L2b,LINE,L2,-157,3230,2935,32927011,32930376 -4 - chr2 32928236 32928312 chr2,32928191,32928312,-,L2b,LINE,L2,0,3375,3242,32928191,32931553 -2 - chr2 33706886 33706953 chr2,33706674,33707027,+,THE1A,LTR,ERVL-MaLR,1,353,-2,33706674,33707029 +1 + chr2 33855688 33855753 chr2,33855481,33855826,+,MSTD,LTR,ERVL-MaLR,1,396,0,33855481,33855826 +3 + chr2 33926840 33926968 chr2,33926753,33927097,+,MLT1C,LTR,ERVL-MaLR,10,399,-68,33926744,33927165 +3 + chr2 34060750 34060765 chr2,34060579,34060765,+,MER58A,DNA,hAT-Charlie,1,221,-3,34060579,34060768 +2 + chr2 34060821 34060917 chr2,34060821,34060917,-,MER58A,DNA,hAT-Charlie,-127,97,2,34060694,34060918 -6 - chr2 34069099 34069550 chr2,34068841,34069634,+,L1MA8,LINE,L1,5442,6273,-18,34063400,34069652 +5 + chr2 34297468 34297712 chr2,34297446,34297712,-,AluY,SINE,Alu,-12,299,35,34297434,34297746 -2 - chr2 34383800 34384058 chr2,34383800,34384058,+,MIRb,SINE,MIR,8,266,-2,34383793,34384060 +6 + chr2 34635311 34635340 chr2,34635311,34641476,+,L1PA4,LINE,L1,1,6152,-3,34635311,34641479 +5 + chr2 34677579 34677662 chr2,34677192,34677662,+,LTR2B,LTR,ERV1,1,483,0,34677192,34677662 +1 + chr2 34677662 34677927 chr2,34677662,34678040,+,Harlequin-int,LTR,ERV1,1,380,-6516,34677662,34684556 +4 + chr2 34692290 34692477 chr2,34692161,34692477,-,AluSx,SINE,Alu,-1,311,1,34692160,34692477 +5 - chr2 34700359 34700478 chr2,34699433,34700478,-,HERVH-int,LTR,ERV1,-4726,2987,1942,34694707,34702419 +5 - chr2 34700480 34700678 chr2,34700480,34700954,-,HERVH-int,LTR,ERV1,-7239,474,1,34693241,34700954 +2 - chr2 34700809 34700878 chr2,34700480,34700954,-,HERVH-int,LTR,ERV1,-7239,474,1,34693241,34700954 +3 - chr2 34704711 34704895 chr2,34704585,34704895,-,AluY,SINE,Alu,-20,291,1,34704565,34704895 -1 - chr2 34710452 34710513 chr2,34710334,34710528,-,Arthur1A,DNA,hAT-Tip100,-3,174,1,34710331,34710528 -1 - chr2 34713578 34713773 chr2,34713370,34713929,-,MamRep1527,LTR,LTR,-120,849,245,34713250,34714173 -1 - chr2 34722485 34722563 chr2,34722485,34722829,+,AluJo,SINE,Alu,1,312,0,34722485,34722829 +5 + chr2 34731416 34731538 chr2,34731416,34731633,-,MLT1J1,LTR,ERVL-MaLR,-200,244,1,34731216,34731633 -4 - chr2 34732422 34732557 chr2,34732422,34733188,-,LTR17,LTR,ERV1,0,780,1,34732422,34733188 -4 - chr2 34735289 34735323 chr2,34735289,34735323,+,MER34C2,LTR,ERV1,4,37,-518,34735286,34735841 +6 + chr2 34737081 34737118 chr2,34736772,34737161,+,LTR7B,LTR,ERV1,1,464,0,34736772,34737161 -1 + chr2 34737321 34737721 chr2,34737166,34737721,-,ERV3-16A3_I-int,LTR,ERVL,-364,4862,4321,34736802,34742041 -5 - chr2 34737813 34738231 chr2,34737813,34738257,+,MER67D,LTR,ERV1,29,513,-1,34737785,34738258 +5 + chr2 34831363 34831492 chr2,34830972,34831594,-,L1M1,LINE,L1,-6886,679,52,34824086,34831645 -1 - chr2 35159084 35160278 chr2,35158460,35160285,-,L1ME3D,LINE,L1,-4269,2371,624,35154191,35160908 -5 - chr2 35170227 35170349 chr2,35170227,35170580,-,LTR89,LTR,ERVL?,-77,802,453,35170150,35171032 -5 - chr2 35173056 35173179 chr2,35173056,35173186,+,(TA)n,Simple_repeat,Simple_repeat,1,130,0,35173056,35173186 +5 + chr2 35174529 35174806 chr2,35174509,35174806,-,AluSc8,SINE,Alu,-14,297,1,35174495,35174806 -2 - chr2 35174806 35174889 chr2,35174806,35174889,-,L1MEf,LINE,L1,-1004,5142,5059,35173802,35179947 -6 - chr2 36840538 36840556 chr2,36840538,36840556,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,36840538,36840556 -6 + chr2 36840603 36840736 chr2,36840603,36840736,-,L2a,LINE,L2,-2,3424,3275,36840601,36844010 +6 - chr2 36841204 36841316 chr2,36841204,36841316,+,UCON74,DNA?,DNA?,16,142,-517,36841189,36841833 -6 + chr2 37208875 37210771 chr2,37206655,37210771,+,L1PB1,LINE,L1,2653,6862,-5,37204003,37210776 +1 + chr2 37212148 37212299 chr2,37212148,37212299,+,MER103C,DNA,hAT-Charlie,135,296,-1,37212014,37212300 +6 + chr2 37600136 37600327 chr2,37594197,37600327,-,L1PA6,LINE,L1,-16,6138,4,37594181,37600330 -1 - chr2 37744554 37744586 chr2,37744554,37744586,+,(TATTT)n,Simple_repeat,Simple_repeat,1,35,0,37744554,37744586 +6 + chr2 37744587 37744643 chr2,37744587,37744897,-,AluSx3,SINE,Alu,-3,308,1,37744584,37744897 -4 - chr2 37826247 37826260 chr2,37826108,37826260,-,MIR,SINE,MIR,-21,241,71,37826087,37826330 +5 - chr2 37826260 37826714 chr2,37826260,37826714,-,MLT1D,LTR,ERVL-MaLR,0,505,1,37826260,37826714 +6 - chr2 37826714 37826782 chr2,37826714,37826782,-,MIR,SINE,MIR,-192,70,4,37826522,37826785 +6 - chr2 37826782 37827091 chr2,37826782,37827091,-,Tigger11a,DNA,TcMar-Tigger,-396,339,11,37826386,37827101 +6 - chr2 37827389 37827443 chr2,37827389,37827443,-,MER131,DNA?,DNA?,-125,90,37,37827264,37827479 +6 - chr2 37828936 37829038 chr2,37828936,37829243,+,AluJr,SINE,Alu,1,307,-5,37828936,37829248 -2 + chr2 37829373 37829432 chr2,37829373,37829510,-,LTR79,LTR,ERVL,-280,247,113,37829093,37829622 +1 - chr2 37865241 37865278 chr2,37865241,37865409,+,MIRb,SINE,MIR,103,268,0,37865139,37865409 -2 + chr2 37876111 37876186 chr2,37875981,37876186,-,L2a,LINE,L2,0,3426,3213,37875981,37879398 +4 - chr2 37963092 37963155 chr2,37956656,37963165,-,L1PA7,LINE,L1,0,6469,2,37956656,37963166 +3 - chr2 38029855 38029920 chr2,38029770,38030139,-,THE1B,LTR,ERVL-MaLR,0,364,1,38029770,38030139 +3 - chr2 38100603 38100745 chr2,38100470,38100882,+,L2b,LINE,L2,2961,3426,0,38097510,38100882 +1 + chr2 38101056 38101066 chr2,38101056,38101349,-,L2,LINE,L2,-1812,1607,1313,38099244,38102661 -4 - chr2 38113382 38113507 chr2,38113382,38113550,+,MIR3,SINE,MIR,31,201,-7,38113352,38113557 +4 + chr2 38118898 38119004 chr2,38118695,38119004,+,AluY,SINE,Alu,1,307,-4,38118695,38119008 +1 + chr2 38121636 38121698 chr2,38121572,38121698,+,L1MB7,LINE,L1,6041,6184,0,38115532,38121698 +1 + chr2 38122010 38122130 chr2,38122010,38122130,+,MIR3,SINE,MIR,34,165,-43,38121977,38122173 +6 + chr2 38122010 38122130 chr2,38122010,38122130,+,MIR3,SINE,MIR,34,165,-43,38121977,38122173 -6 + chr2 38122195 38122225 chr2,38122195,38122267,-,MIRc,SINE,MIR,-74,194,122,38122121,38122388 -4 - chr2 38122195 38122267 chr2,38122195,38122267,-,MIRc,SINE,MIR,-74,194,122,38122121,38122388 +6 - chr2 38122916 38123054 chr2,38122916,38123054,+,MIR3,SINE,MIR,65,199,-9,38122852,38123063 -6 + chr2 38123299 38123399 chr2,38123299,38123399,+,MIRb,SINE,MIR,4,116,-152,38123296,38123551 -6 + chr2 38132637 38132720 chr2,38132407,38138592,-,L1PA4,LINE,L1,0,6155,1,38132407,38138592 +5 - chr2 38138495 38138592 chr2,38132407,38138592,-,L1PA4,LINE,L1,0,6155,1,38132407,38138592 +5 - chr2 38151352 38151380 chr2,38150788,38151587,+,L1M2,LINE,L1,4272,5100,-1043,38146517,38152630 +5 + chr2 38180442 38180492 chr2,38180442,38180492,+,MamGypLTR3,LTR,Gypsy,519,568,-413,38179924,38180905 +6 + chr2 38180741 38180924 chr2,38180741,38180924,+,MamGypLTR3,LTR,Gypsy,703,893,-1,38180039,38180925 +6 + chr2 38180928 38181058 chr2,38180928,38181058,-,L1ME4c,LINE,L1,-411,419,293,38180517,38181350 -6 - chr2 38239060 38239202 chr2,38239060,38239202,-,MIRc,SINE,MIR,-12,196,40,38239048,38239241 +6 - chr2 38239272 38239326 chr2,38239272,38239326,+,L2c,LINE,L2,3314,3376,-11,38235959,38239337 -6 + chr2 38406719 38406820 chr2,38406712,38406820,-,AluSp,SINE,Alu,-7,306,199,38406705,38407018 +5 - chr2 38433477 38433561 chr2,38433477,38433561,-,MER5B,DNA,hAT-Charlie,-89,89,7,38433388,38433567 -6 - chr2 38458637 38458809 chr2,38458598,38458809,-,MLT1I,LTR,ERVL-MaLR,-14,397,157,38458584,38458965 +5 - chr2 38462981 38463013 chr2,38462981,38463013,+,A-rich,Low_complexity,Low_complexity,1,32,0,38462981,38463013 -6 + chr2 38496386 38496478 chr2,38496386,38496507,+,MIR3,SINE,MIR,41,165,-43,38496346,38496550 -2 + chr2 38515447 38515740 chr2,38515436,38515973,+,LTR18B,LTR,ERVL,1,586,-28,38515436,38516001 -1 + chr2 38602152 38602178 chr2,38602152,38602183,+,(CGC)n,Simple_repeat,Simple_repeat,1,33,0,38602152,38602183 +5 + chr2 38668688 38668761 chr2,38668655,38668764,+,AluJr4,SINE,Alu,1,118,-194,38668655,38668958 -5 + chr2 38669339 38669533 chr2,38669103,38669533,+,LTR2,LTR,ERV1,1,463,0,38669103,38669533 -4 + chr2 38671354 38671421 chr2,38671280,38671616,-,THE1D,LTR,ERVL-MaLR,-2,379,1,38671278,38671616 +1 - chr2 38862618 38862722 chr2,38862486,38862722,-,MIR,SINE,MIR,-6,256,14,38862480,38862735 -2 - chr2 38959305 38959419 chr2,38959305,38959419,-,L1MC5,LINE,L1,-4,9300,9174,38959301,38968592 +6 - chr2 38992955 38993066 chr2,38992955,38993078,+,AluJr,SINE,Alu,1,125,-187,38992955,38993265 -5 + chr2 38993392 38993460 chr2,38993165,38993460,-,AluJr,SINE,Alu,-18,294,1,38993147,38993460 +4 - chr2 38993655 38993753 chr2,38993655,38993753,-,MIR,SINE,MIR,-142,120,16,38993513,38993768 +6 - chr2 39323446 39323644 chr2,39323446,39323644,+,Tigger6a,DNA,TcMar-Tigger,2,206,-877,39323445,39324521 -6 + chr2 39323655 39323804 chr2,39323655,39324042,+,Tigger6a,DNA,TcMar-Tigger,698,1083,0,39322958,39324042 -1 + chr2 39453839 39453931 chr2,39453626,39453953,-,AluJo,SINE,Alu,-1,311,1,39453625,39453953 -1 - chr2 39454460 39454726 chr2,39454460,39454755,+,AluY,SINE,Alu,3,294,-17,39454458,39454772 +5 + chr2 39474527 39474595 chr2,39474274,39474595,-,MER2,DNA,TcMar-Tigger,0,345,2,39474274,39474596 -2 - chr2 39474595 39474627 chr2,39474595,39474627,-,L1M5,LINE,L1,-2940,3206,3159,39471655,39477785 -6 - chr2 39474627 39474681 chr2,39474627,39474681,+,(GT)n,Simple_repeat,Simple_repeat,1,54,0,39474627,39474681 +6 + chr2 39474681 39474758 chr2,39474681,39474770,-,L1M5,LINE,L1,-2988,3158,3062,39471693,39477831 -5 - chr2 39514438 39514639 chr2,39514438,39514639,+,MIRb,SINE,MIR,14,215,-53,39514425,39514692 +6 + chr2 39515074 39515156 chr2,39515074,39515156,+,MER5A,DNA,hAT-Charlie,1,83,-106,39515074,39515262 +6 + chr2 39557982 39558046 chr2,39557909,39558381,-,MLT2B4,LTR,ERVL,-40,516,1,39557869,39558381 -3 - chr2 39587016 39587034 chr2,39586993,39587450,-,L1ME3C,LINE,L1,-62,6061,5571,39586931,39593020 -3 - chr2 39599366 39599687 chr2,39599300,39599687,+,Arthur1,DNA,hAT-Tip100,1068,1418,-2529,39598233,39602216 +5 + chr2 39599705 39600245 chr2,39599705,39600245,+,Arthur1,DNA,hAT-Tip100,3366,3947,0,39596340,39600245 +6 + chr2 39600259 39600393 chr2,39600259,39600393,-,MER5A1,DNA,hAT-Charlie,0,166,3,39600259,39600395 -6 - chr2 39600403 39600526 chr2,39600403,39600526,-,MER5A,DNA,hAT-Charlie,0,189,58,39600403,39600583 -6 - chr2 39600536 39600615 chr2,39600536,39600615,+,L1MC,LINE,L1,5510,5588,-2294,39595027,39602909 +6 + chr2 39600630 39600724 chr2,39600630,39600724,-,LTR50,LTR,ERVL,-675,120,25,39599955,39600748 -6 - chr2 39600740 39600915 chr2,39600740,39600915,+,L1ME3Cz,LINE,L1,354,543,-349,39600387,39601264 +6 + chr2 39601031 39601152 chr2,39601031,39601152,+,L1ME3Cz,LINE,L1,564,685,-239,39600468,39601391 +6 + chr2 39601218 39601344 chr2,39601218,39601549,+,AluY,SINE,Alu,1,311,0,39601218,39601549 +5 + chr2 39603312 39604076 chr2,39602963,39604401,-,L1MC4,LINE,L1,-3,8039,6416,39602960,39610816 -5 - chr2 39786455 39786525 chr2,39786455,39786716,+,AluSx,SINE,Alu,29,292,-20,39786427,39786736 +4 + chr2 39919693 39919783 chr2,39919156,39921143,-,L1MA4A,LINE,L1,-4911,1938,2,39914245,39921144 -1 - chr2 40042353 40042473 chr2,40042353,40042626,-,AluSc,SINE,Alu,-35,274,2,40042318,40042627 -4 - chr2 40065730 40065767 chr2,40065730,40065767,+,A-rich,Low_complexity,Low_complexity,1,38,0,40065730,40065767 +6 + chr2 40072753 40073000 chr2,40071263,40073180,-,L1PA13,LINE,L1,-4336,2017,7,40066927,40073186 -1 - chr2 40086964 40087013 chr2,40086092,40088474,-,L1MA3,LINE,L1,-5103,2462,15,40080989,40088488 -1 - chr2 40114883 40114980 chr2,40114883,40114980,+,(AACAA)n,Simple_repeat,Simple_repeat,1,99,0,40114883,40114980 +1 + chr2 40116875 40117035 chr2,40116875,40117092,+,MIRb,SINE,MIR,22,239,-29,40116854,40117121 +4 + chr2 40209026 40209217 chr2,40208967,40209664,-,L2a,LINE,L2,-8,3418,2684,40208959,40212347 -1 - chr2 40209975 40210020 chr2,40209975,40210020,-,MER117,DNA,hAT-Charlie,-132,65,21,40209843,40210040 -6 - chr2 40220165 40220267 chr2,40220165,40220267,+,A-rich,Low_complexity,Low_complexity,1,103,0,40220165,40220267 +6 + chr2 40250345 40250383 chr2,40250205,40250383,+,MIRb,SINE,MIR,17,220,-48,40250189,40250431 +1 + chr2 40254958 40255054 chr2,40254958,40255054,+,(TCTT)n,Simple_repeat,Simple_repeat,1,100,0,40254958,40255054 +6 + chr2 40746487 40746652 chr2,40746162,40746658,+,MER51A,LTR,ERV1,2,634,0,40746161,40746658 +1 + chr2 41890351 41890418 chr2,41890142,41890582,+,MLT1J,LTR,ERVL-MaLR,45,504,-8,41890098,41890590 +3 + chr2 41894000 41894046 chr2,41894000,41894095,-,MIRb,SINE,MIR,0,268,175,41894000,41894269 -5 - chr2 42015625 42015645 chr2,42013729,42015645,-,SVA_D,Retroposon,SVA,0,1386,8,42013729,42015652 +5 - chr2 42022182 42022253 chr2,42022095,42022444,+,L2,LINE,L2,2385,2744,-675,42019711,42023119 -3 + chr2 42149935 42150032 chr2,42149773,42150083,+,AluSx,SINE,Alu,1,306,-6,42149773,42150089 -3 + chr2 43003883 43003932 chr2,43003792,43004008,+,MLT1B,LTR,ERVL-MaLR,185,390,0,43003608,43004008 -3 + chr2 43027853 43028185 chr2,43027782,43028262,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,43027780,43028262 +5 - chr2 43028946 43029063 chr2,43028946,43029063,+,L2c,LINE,L2,3083,3198,-189,43025864,43029252 -6 + chr2 43029658 43029722 chr2,43029658,43029722,+,L2a,LINE,L2,2848,2919,-500,43026811,43030222 -6 + chr2 43029722 43029977 chr2,43029722,43029990,+,AluSx1,SINE,Alu,1,268,-44,43029722,43030034 -2 + chr2 43031135 43031227 chr2,43031020,43031227,+,MIRb,SINE,MIR,41,260,-8,43030980,43031235 -4 + chr2 43032734 43032760 chr2,43032706,43032760,-,MER5A,DNA,hAT-Charlie,-8,181,128,43032698,43032887 +4 - chr2 43033233 43033526 chr2,43033146,43033606,+,MLT1D,LTR,ERVL-MaLR,2,504,-1,43033145,43033607 -5 + chr2 43035055 43035152 chr2,43034896,43035211,+,AluJb,SINE,Alu,1,312,0,43034896,43035211 -3 + chr2 43041226 43041267 chr2,43041226,43041267,+,(TG)n,Simple_repeat,Simple_repeat,1,42,0,43041226,43041267 -6 + chr2 43041481 43041635 chr2,43041481,43041635,-,MIR1_Amn,SINE,MIR,-2,206,26,43041479,43041660 +6 - chr2 43097959 43098040 chr2,43097959,43098087,-,L2b,LINE,L2,-190,3197,3076,43097769,43101162 +2 - chr2 43228061 43228248 chr2,43228061,43228248,+,MIRc,SINE,MIR,23,223,-45,43228039,43228293 +6 + chr2 43233300 43233394 chr2,43233300,43233586,-,MER58B,DNA,hAT-Charlie,0,341,1,43233300,43233586 -5 - chr2 44921576 44921894 chr2,44921576,44921894,-,MLT1A0,LTR,ERVL-MaLR,0,365,2,44921576,44921895 +6 - chr2 44922238 44922266 chr2,44922238,44922266,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,44922238,44922266 -6 + chr2 44922460 44922489 chr2,44922460,44922489,+,(AAT)n,Simple_repeat,Simple_repeat,1,29,0,44922460,44922489 -6 + chr2 44928341 44928396 chr2,44928341,44928422,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,82,0,44928341,44928422 -1 + chr2 44941414 44941482 chr2,44941414,44941482,+,GA-rich,Low_complexity,Low_complexity,1,73,0,44941414,44941482 -6 + chr2 44941794 44941830 chr2,44941794,44941830,+,(CTCTCC)n,Simple_repeat,Simple_repeat,1,36,0,44941794,44941830 -6 + chr2 44957122 44957166 chr2,44957022,44957290,+,MER46C,DNA,TcMar-Tigger,58,337,-1,44956965,44957291 +3 + chr2 44967241 44967484 chr2,44967241,44967484,-,MIRb,SINE,MIR,-16,252,11,44967225,44967494 -6 - chr2 44967662 44967689 chr2,44967662,44967689,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,27,0,44967662,44967689 +6 + chr2 44968587 44968610 chr2,44968587,44968610,+,ORSL-2b,DNA,hAT-Tip100,184,201,-307,44968404,44968917 +6 + chr2 44968610 44968762 chr2,44968610,44968912,+,AluJr,SINE,Alu,2,297,-15,44968609,44968927 +5 + chr2 45174528 45174587 chr2,45174528,45174874,+,MER2,DNA,TcMar-Tigger,3,340,-5,45174526,45174879 -2 + chr2 45187170 45187450 chr2,45187168,45187450,-,AluY,SINE,Alu,-29,282,1,45187139,45187450 +5 - chr2 45188680 45188862 chr2,45188680,45188862,+,L2,LINE,L2,2672,2858,-561,45186009,45189423 -6 + chr2 45188919 45188973 chr2,45188919,45188973,+,(CA)n,Simple_repeat,Simple_repeat,1,56,0,45188919,45188973 -6 + chr2 45254667 45254701 chr2,45254583,45254701,+,MIR3,SINE,MIR,30,171,-37,45254554,45254738 -4 + chr2 46078246 46078369 chr2,46078246,46078554,+,AluJr,SINE,Alu,1,297,-15,46078246,46078569 -2 + chr2 46166789 46166963 chr2,46166709,46166998,+,AluJb,SINE,Alu,2,290,-22,46166708,46167020 -5 + chr2 46392297 46392483 chr2,46392016,46392519,+,L1ME1,LINE,L1,5608,6151,-28,46386409,46392547 -5 + chr2 46393113 46393189 chr2,46392693,46393189,-,L2,LINE,L2,-2798,621,89,46389895,46393277 +4 - chr2 46394024 46394140 chr2,46394024,46394140,-,MamTip2,DNA,hAT-Tip100,-174,131,24,46393850,46394163 +6 - chr2 46500936 46501211 chr2,46500904,46501211,-,AluJb,SINE,Alu,-2,310,2,46500902,46501212 -2 - chr2 46501211 46501278 chr2,46501211,46501279,-,MIR,SINE,MIR,-115,147,71,46501096,46501349 -5 - chr2 46568256 46568558 chr2,46568170,46568558,-,LTR47A2,LTR,ERVL,0,432,1,46568170,46568558 +5 - chr2 46568558 46568769 chr2,46568558,46568769,-,MER20B,DNA,hAT-Charlie,-553,230,5,46568005,46568773 +6 - chr2 46568772 46568886 chr2,46568772,46568886,+,L2c,LINE,L2,3238,3387,0,46565535,46568886 -6 + chr2 46580035 46580238 chr2,46579857,46580733,+,L2a,LINE,L2,2559,3421,-5,46577299,46580738 -1 + chr2 46669852 46670063 chr2,46669852,46670063,-,MIR3,SINE,MIR,-23,245,16,46669829,46670078 -6 - chr2 46670151 46670567 chr2,46670151,46670567,+,L2c,LINE,L2,2964,3387,0,46667188,46670567 +6 + chr2 46777800 46778060 chr2,46777800,46778060,+,AluSx,SINE,Alu,1,260,-52,46777800,46778112 +6 + chr2 46778157 46778308 chr2,46778157,46778308,-,L2c,LINE,L2,-248,3139,2974,46777909,46781281 -6 - chr2 46778535 46778961 chr2,46778535,46778961,+,LTR16A,LTR,ERVL,6,451,0,46778530,46778961 +6 + chr2 46778982 46779016 chr2,46778982,46779016,+,(AC)n,Simple_repeat,Simple_repeat,1,34,0,46778982,46779016 +6 + chr2 46779026 46779065 chr2,46779026,46779065,+,(TGTA)n,Simple_repeat,Simple_repeat,1,39,0,46779026,46779065 +6 + chr2 46779623 46779786 chr2,46779623,46779786,-,MIRb,SINE,MIR,-83,185,9,46779540,46779794 -6 - chr2 46779899 46780245 chr2,46779899,46780291,+,LTR16C,LTR,ERVL,69,489,0,46779831,46780291 +5 + chr2 46816748 46816793 chr2,46816748,46816793,+,AluJo,SINE,Alu,253,299,-13,46816496,46816806 +6 + chr2 46818685 46818800 chr2,46818685,46818800,+,MIRc,SINE,MIR,31,156,-112,46818655,46818912 +6 + chr2 46819069 46819167 chr2,46819069,46819167,-,L2c,LINE,L2,-203,3184,3092,46818866,46822258 -6 - chr2 46819167 46819458 chr2,46819167,46819459,+,AluSq,SINE,Alu,14,300,-13,46819154,46819472 +5 + chr2 46822130 46822247 chr2,46822130,46822247,+,L3b,LINE,CR1,4982,5101,-131,46817149,46822378 +6 + chr2 46822549 46822657 chr2,46822549,46822759,-,MER5C1,DNA,hAT-Charlie,0,263,52,46822549,46822810 -5 - chr2 46845876 46846219 chr2,46845823,46846219,+,LTR33B,LTR,ERVL,35,502,-1,46845789,46846220 +1 + chr2 46846264 46846397 chr2,46846264,46846397,-,MIRb,SINE,MIR,-70,198,4,46846194,46846400 -6 - chr2 46846596 46846810 chr2,46846596,46846810,-,Charlie30a,DNA,hAT-Charlie,-550,241,20,46846046,46846829 -6 - chr2 46852020 46852119 chr2,46851882,46852119,-,MER33,DNA,hAT-Charlie,0,324,115,46851882,46852233 +5 - chr2 46852119 46852254 chr2,46852119,46852254,-,MLT1C,LTR,ERVL-MaLR,0,467,330,46852119,46852583 +6 - chr2 46852293 46852568 chr2,46852293,46852586,+,AluJo,SINE,Alu,1,297,-15,46852293,46852601 -2 + chr2 46855816 46855950 chr2,46855816,46855950,+,MER5B,DNA,hAT-Charlie,51,170,-8,46855766,46855958 +6 + chr2 46906884 46906992 chr2,46906834,46906992,-,AluJb,SINE,Alu,-8,304,147,46906826,46907138 -2 - chr2 46906994 46907104 chr2,46906994,46907104,+,MIRc,SINE,MIR,141,246,-22,46906854,46907126 +6 + chr2 46907372 46907694 chr2,46907372,46907694,-,AluJr4,SINE,Alu,0,312,3,46907372,46907696 -6 - chr2 46908121 46908249 chr2,46908121,46908249,+,L1ME4c,LINE,L1,693,830,0,46907429,46908249 +6 + chr2 46908264 46908563 chr2,46908264,46908563,-,AluJb,SINE,Alu,-16,296,1,46908248,46908563 -6 - chr2 47192405 47192433 chr2,47192220,47192433,+,MIRb,SINE,MIR,23,244,-24,47192198,47192457 -5 + chr2 47192687 47192728 chr2,47192687,47192728,+,(TCTC)n,Simple_repeat,Simple_repeat,1,41,0,47192687,47192728 -5 + chr2 47213949 47214429 chr2,47213738,47214429,+,L1ME1,LINE,L1,5485,6179,0,47208254,47214429 -5 + chr2 47214471 47214685 chr2,47214471,47214685,+,MIRb,SINE,MIR,7,245,-23,47214465,47214708 -6 + chr2 47214690 47214724 chr2,47214690,47214724,+,(TCATCC)n,Simple_repeat,Simple_repeat,1,34,0,47214690,47214724 -6 + chr2 47220809 47220887 chr2,47220726,47220887,+,MIR,SINE,MIR,76,243,-19,47220651,47220906 -4 + chr2 47220909 47221323 chr2,47220909,47221400,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,47220909,47221400 -2 + chr2 47331123 47331148 chr2,47331123,47331148,+,(TTCA)n,Simple_repeat,Simple_repeat,1,25,0,47331123,47331148 +6 + chr2 47331380 47331781 chr2,47331261,47331781,-,MER1A,DNA,hAT-Charlie,0,529,1,47331261,47331781 +5 - chr2 47331261 47331781 chr2,47331261,47331781,-,MER1A,DNA,hAT-Charlie,0,529,1,47331261,47331781 -5 - chr2 47331912 47331967 chr2,47331912,47331967,-,MER45C,DNA,hAT-Tip100,0,953,899,47331912,47332865 +6 - chr2 47331912 47331967 chr2,47331912,47331967,-,MER45C,DNA,hAT-Tip100,0,953,899,47331912,47332865 -6 - chr2 47331967 47332107 chr2,47331967,47332134,+,AluJb,SINE,Alu,136,306,-6,47331832,47332140 -2 + chr2 47331967 47332134 chr2,47331967,47332134,+,AluJb,SINE,Alu,136,306,-6,47331832,47332140 +6 + chr2 47332273 47332408 chr2,47332143,47332915,-,MER45C,DNA,hAT-Tip100,-69,884,93,47332074,47333007 +3 - chr2 47332143 47332915 chr2,47332143,47332915,-,MER45C,DNA,hAT-Tip100,-69,884,93,47332074,47333007 -6 - chr2 47332934 47333026 chr2,47332915,47333046,+,FLAM_A,SINE,Alu,4,132,-10,47332912,47333056 -3 + chr2 47332915 47333046 chr2,47332915,47333046,+,FLAM_A,SINE,Alu,4,132,-10,47332912,47333056 +6 + chr2 47333046 47333160 chr2,47333046,47333160,-,MER45C,DNA,hAT-Tip100,-861,92,1,47332185,47333160 -6 - chr2 47333734 47334028 chr2,47333734,47334028,+,AluSc5,SINE,Alu,1,295,-14,47333734,47334042 +6 + chr2 47334136 47334261 chr2,47334136,47334261,-,FLAM_A,SINE,Alu,-10,132,8,47334126,47334268 -6 - chr2 47334501 47334799 chr2,47334501,47334799,-,AluSx,SINE,Alu,-14,298,2,47334487,47334800 -6 - chr2 47334907 47335062 chr2,47334907,47335062,+,LTR88a,LTR,Gypsy?,653,806,-10,47334255,47335072 +6 + chr2 47335314 47335514 chr2,47335314,47335514,+,BC200,scRNA,scRNA,1,200,0,47335314,47335514 +6 + chr2 47335632 47335826 chr2,47335632,47335826,-,L1PA11,LINE,L1,0,6174,5980,47335632,47341805 -6 - chr2 47335829 47336141 chr2,47335829,47336141,-,AluSz,SINE,Alu,0,312,1,47335829,47336141 -6 - chr2 47336194 47336220 chr2,47336194,47336220,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,47336194,47336220 +6 + chr2 47336325 47336419 chr2,47336325,47336419,-,MamTip2,DNA,hAT-Tip100,-180,125,35,47336145,47336453 -6 - chr2 47337291 47337590 chr2,47337291,47337590,+,AluJb,SINE,Alu,1,312,0,47337291,47337590 +6 + chr2 47337813 47338126 chr2,47337813,47338126,-,AluSq2,SINE,Alu,-3,310,1,47337810,47338126 -6 - chr2 47338139 47338271 chr2,47338139,47338271,+,L1MEc,LINE,L1,1220,1334,-5081,47336920,47343352 +6 + chr2 47338267 47338370 chr2,47338267,47338370,+,L1MEc,LINE,L1,1905,2007,-4393,47336363,47342763 +6 + chr2 47338370 47338524 chr2,47338370,47338524,+,FAM,SINE,Alu,38,185,0,47338333,47338524 +6 + chr2 47338529 47338638 chr2,47338529,47338638,+,L1MEc,LINE,L1,1993,2101,-4299,47336537,47342937 +6 + chr2 47338802 47338961 chr2,47338802,47338961,+,MLT1C,LTR,ERVL-MaLR,17,179,-288,47338786,47339249 +6 + chr2 47338961 47339264 chr2,47338961,47339264,+,AluSx1,SINE,Alu,3,305,-7,47338959,47339271 +6 + chr2 47339264 47339458 chr2,47339264,47339458,+,MLT1C,LTR,ERVL-MaLR,180,401,-66,47339085,47339524 +6 + chr2 47339458 47339767 chr2,47339458,47339767,-,AluSp,SINE,Alu,-6,307,1,47339452,47339767 -6 - chr2 47339767 47339835 chr2,47339767,47339835,+,MLT1C,LTR,ERVL-MaLR,402,467,0,47339366,47339835 +6 + chr2 47340822 47341116 chr2,47340822,47341116,-,MER115,DNA,hAT-Tip100,-383,310,10,47340439,47341125 -6 - chr2 47341171 47341473 chr2,47341171,47341473,-,AluY,SINE,Alu,-6,305,1,47341165,47341473 -6 - chr2 47341574 47341754 chr2,47341574,47341754,+,MER20,DNA,hAT-Charlie,1,170,-49,47341574,47341803 +6 + chr2 47341754 47342064 chr2,47341754,47342064,+,AluSx1,SINE,Alu,1,309,-3,47341754,47342067 +6 + chr2 47342064 47342122 chr2,47342064,47342122,+,MER20,DNA,hAT-Charlie,171,214,-5,47341894,47342127 +6 + chr2 47342280 47342584 chr2,47342280,47342584,+,AluSx4,SINE,Alu,1,300,-10,47342280,47342594 +6 + chr2 47342845 47343148 chr2,47342845,47343148,-,AluSp,SINE,Alu,-10,303,1,47342835,47343148 -6 - chr2 47343169 47343237 chr2,47343169,47343237,-,MIRb,SINE,MIR,-170,98,28,47342999,47343264 -6 - chr2 47343772 47344073 chr2,47343772,47344073,+,AluSx,SINE,Alu,1,303,-9,47343772,47344082 +6 + chr2 47344074 47344112 chr2,47344074,47344112,+,(TA)n,Simple_repeat,Simple_repeat,1,38,0,47344074,47344112 +6 + chr2 47344120 47344188 chr2,47344120,47344188,-,L2a,LINE,L2,-13,3413,3347,47344107,47347534 -6 - chr2 47344446 47344517 chr2,47344446,47344734,-,AluSq2,SINE,Alu,-12,301,1,47344434,47344734 -5 - chr2 47344982 47345018 chr2,47344982,47345018,+,A-rich,Low_complexity,Low_complexity,1,36,0,47344982,47345018 -1 + chr2 47906141 47906159 chr2,47906141,47906203,+,G-rich,Low_complexity,Low_complexity,1,63,0,47906141,47906203 +4 + chr2 47907635 47907728 chr2,47907635,47907728,+,MIR3,SINE,MIR,16,124,-84,47907620,47907812 +5 + chr2 47942067 47942456 chr2,47942067,47942456,-,MLT1A,LTR,ERVL-MaLR,0,374,1,47942067,47942456 +6 - chr2 47945152 47945269 chr2,47944586,47945269,+,L2,LINE,L2,2320,3063,-356,47942267,47945625 -5 + chr2 47945266 47945287 chr2,47945266,47945387,-,MIRc,SINE,MIR,-141,127,3,47945125,47945389 +2 - chr2 47962433 47962576 chr2,47960605,47962941,+,L1MA1,LINE,L1,5381,7717,-4,47955225,47962945 -3 + chr2 47995147 47995314 chr2,47995132,47995314,-,HAL1ME,LINE,L1,-2253,212,8,47992879,47995321 +4 - chr2 48004886 48004950 chr2,48004886,48004953,+,(TTC)n,Simple_repeat,Simple_repeat,1,69,0,48004886,48004953 -2 + chr2 48022337 48022403 chr2,48022109,48022404,-,AluSz,SINE,Alu,-14,298,2,48022095,48022405 +3 - chr2 48109578 48109678 chr2,48109578,48109751,+,MIRb,SINE,MIR,30,219,-49,48109549,48109800 -2 + chr2 48164888 48164914 chr2,48164639,48164914,-,MLT1I,LTR,ERVL-MaLR,-30,381,98,48164609,48165011 +4 - chr2 48180322 48180458 chr2,48180182,48180494,+,AluSx1,SINE,Alu,1,311,-1,48180182,48180495 -3 + chr2 48240928 48240983 chr2,48240845,48241220,-,THE1C,LTR,ERVL-MaLR,0,375,1,48240845,48241220 +1 - chr2 51202147 51202314 chr2,51202147,51202345,+,MIRc,SINE,MIR,16,223,-45,51202132,51202390 -2 + chr2 51203018 51203161 chr2,51203018,51203241,-,MLT1H,LTR,ERVL-MaLR,-286,263,3,51202732,51203243 +2 - chr2 51221671 51221760 chr2,51221641,51221760,-,MLT1A0,LTR,ERVL-MaLR,-50,315,194,51221591,51221953 +4 - chr2 51378095 51378173 chr2,51377880,51378257,+,THE1C,LTR,ERVL-MaLR,1,375,0,51377880,51378257 +3 + chr2 51527602 51527660 chr2,51527279,51527718,-,MLT1D,LTR,ERVL-MaLR,0,505,72,51527279,51527789 -3 - chr2 51861449 51861488 chr2,51861224,51862334,-,L1ME3,LINE,L1,-163,5999,4840,51861061,51867173 -3 - chr2 52316232 52316300 chr2,52316226,52316406,+,MIRc,SINE,MIR,18,210,-58,52316209,52316464 +3 + chr2 52349325 52349527 chr2,52349298,52349527,-,AluSc8,SINE,Alu,-7,304,77,52349291,52349603 -2 - chr2 52349538 52350107 chr2,52349538,52350107,+,L2a,LINE,L2,2579,3181,-245,52346960,52350352 +6 + chr2 52350369 52350526 chr2,52350369,52350526,-,L2a,LINE,L2,0,3426,3198,52350369,52353723 -6 - chr2 52350670 52350952 chr2,52350670,52350952,+,MLT1A1,LTR,ERVL-MaLR,85,402,-6,52350586,52350958 +6 + chr2 52352874 52352962 chr2,52352644,52353041,+,MSTD,LTR,ERVL-MaLR,1,396,0,52352644,52353041 +3 + chr2 52389478 52389572 chr2,52389478,52389572,-,LTR79,LTR,ERVL,-39,488,391,52389439,52389962 -6 - chr2 52498603 52498750 chr2,52498376,52498750,+,MSTA,LTR,ERVL-MaLR,5,428,0,52498372,52498750 -4 + chr2 52500567 52500618 chr2,52500567,52500618,+,HAL1,LINE,L1,574,624,-1883,52499994,52502501 -6 + chr2 52722677 52722789 chr2,52722537,52722789,+,MamTip1,DNA,hAT-Tip100,14,267,0,52722524,52722789 -5 + chr2 52722789 52722863 chr2,52722789,52723039,+,MamRep605,LTR?,LTR?,449,703,-146,52722341,52723185 -2 + chr2 52726715 52726818 chr2,52726715,52726922,+,MIR,SINE,MIR,21,238,-24,52726695,52726946 -2 + chr2 52732742 52732777 chr2,52732739,52732834,+,MIR3,SINE,MIR,89,191,-17,52732651,52732851 -3 + chr2 52866381 52866510 chr2,52866291,52866510,-,Charlie1a,DNA,hAT-Charlie,-284,1171,1038,52866007,52867547 -2 - chr2 52909964 52910020 chr2,52909953,52910071,+,L1MEc,LINE,L1,2605,2722,-3597,52907349,52913668 -1 + chr2 54084570 54084591 chr2,54084282,54084591,-,AluSz,SINE,Alu,0,312,1,54084282,54084591 -2 - chr2 54084628 54084819 chr2,54084628,54084819,-,MamRep1527,LTR,LTR,-141,828,629,54084487,54085447 -6 - chr2 54084868 54085051 chr2,54084868,54085051,+,L1MC4,LINE,L1,7713,7887,-155,54077156,54085206 +6 + chr2 54085051 54085066 chr2,54085051,54085696,+,MER6A,DNA,TcMar-Tigger,1,605,0,54085051,54085696 +5 + chr2 54516148 54516249 chr2,54516148,54516326,+,MIR,SINE,MIR,18,210,-52,54516131,54516378 -2 + chr2 54545368 54545464 chr2,54545295,54545464,+,L1PA6,LINE,L1,5533,5660,-512,54539763,54545976 -5 + chr2 55214387 55214530 chr2,55214227,55214530,+,AluSg,SINE,Alu,1,303,-7,55214227,55214537 -5 + chr2 55214724 55214910 chr2,55214724,55214910,+,L1MB4,LINE,L1,5667,5853,-327,55209058,55215237 -6 + chr2 55214931 55215060 chr2,55214931,55215060,-,L1MEd,LINE,L1,-5719,1367,1228,55209212,55216287 +6 - chr2 55215992 55216126 chr2,55215992,55216309,+,AluSq2,SINE,Alu,1,301,-12,55215992,55216321 -1 + chr2 55306097 55306214 chr2,55305909,55306214,-,AluY,SINE,Alu,-7,304,1,55305902,55306214 -1 - chr2 55308501 55308604 chr2,55308501,55308604,-,MIRb,SINE,MIR,-139,129,1,55308362,55308604 -6 - chr2 55313988 55314236 chr2,55313896,55314236,+,MLT1H,LTR,ERVL-MaLR,1,410,-139,55313896,55314375 +1 + chr2 55314404 55314661 chr2,55314404,55314704,-,AluSx,SINE,Alu,-12,300,1,55314392,55314704 -5 - chr2 55329422 55329470 chr2,55329371,55329470,+,L2c,LINE,L2,3235,3333,-54,55326137,55329524 +2 + chr2 55332139 55332261 chr2,55332116,55332420,-,AluSp,SINE,Alu,-11,302,2,55332105,55332421 -3 - chr2 55339676 55339719 chr2,55339676,55339719,+,(TTTACTC)n,Simple_repeat,Simple_repeat,1,43,0,55339676,55339719 +6 + chr2 55339816 55340117 chr2,55339816,55340117,-,AluJo,SINE,Alu,0,312,2,55339816,55340118 -6 - chr2 55345357 55345398 chr2,55345341,55345398,-,MIRc,SINE,MIR,-117,151,95,55345224,55345492 -2 - chr2 55345398 55345696 chr2,55345398,55345696,-,AluSx,SINE,Alu,-9,303,1,55345389,55345696 -6 - chr2 55952158 55952239 chr2,55951983,55952415,+,MLT1C,LTR,ERVL-MaLR,33,467,0,55951951,55952415 +1 + chr2 55963653 55963776 chr2,55963653,55963776,+,MIRb,SINE,MIR,51,180,-88,55963603,55963864 -6 + chr2 56082391 56082445 chr2,56082391,56082528,+,MIR,SINE,MIR,20,164,-98,56082372,56082626 +4 + chr2 56147630 56147740 chr2,56147585,56148039,-,L2c,LINE,L2,-2,3385,2941,56147583,56150979 -1 - chr2 56173534 56174151 chr2,56172673,56174151,-,L1PA3,LINE,L1,-2,6153,4675,56172671,56178825 +5 - chr2 56174150 56175226 chr2,56174150,56175226,+,L1PA3,LINE,L1,3593,4667,-1479,56170558,56176705 -5 + chr2 56175460 56175519 chr2,56175460,56175519,+,MIRc,SINE,MIR,117,177,-91,56175344,56175610 -6 + chr2 56177248 56177364 chr2,56177248,56177396,+,MER5B,DNA,hAT-Charlie,1,174,-4,56177248,56177400 +4 + chr2 56179603 56179953 chr2,56179545,56179953,-,L2c,LINE,L2,-154,3233,2829,56179391,56182781 +4 - chr2 56180046 56180109 chr2,56179969,56180109,-,MLT1F,LTR,ERVL-MaLR,-13,566,426,56179956,56180534 -2 - chr2 56179969 56180109 chr2,56179969,56180109,-,MLT1F,LTR,ERVL-MaLR,-13,566,426,56179956,56180534 +6 - chr2 56181127 56181400 chr2,56181102,56181400,-,AluSz,SINE,Alu,-13,299,1,56181089,56181400 -2 - chr2 56181400 56181652 chr2,56181400,56181686,+,MLT1J,LTR,ERVL-MaLR,195,493,-19,56181206,56181705 +5 + chr2 56184632 56184670 chr2,56184632,56184670,+,(GGC)n,Simple_repeat,Simple_repeat,1,39,0,56184632,56184670 -6 + chr2 58275877 58276157 chr2,58275375,58276157,+,LTR17,LTR,ERV1,1,780,0,58275375,58276157 +1 + chr2 58695634 58696055 chr2,58695594,58696286,-,L1M6,LINE,L1,-5756,740,2,58689838,58696287 -5 - chr2 58924568 58924626 chr2,58924568,58924716,-,MIR3,SINE,MIR,-14,194,32,58924554,58924747 -1 - chr2 58930682 58931076 chr2,58930682,58931111,+,LTR16B2,LTR,ERVL,2,454,-8,58930681,58931119 +5 + chr2 59022956 59022982 chr2,59022823,59023070,-,MIR,SINE,MIR,0,268,17,59022823,59023086 -3 - chr2 59061107 59061407 chr2,59061107,59061407,+,AluSz,SINE,Alu,1,298,-14,59061107,59061421 +6 + chr2 59061834 59061901 chr2,59061834,59061901,+,L2c,LINE,L2,3287,3358,-29,59058548,59061930 +6 + chr2 59062900 59063189 chr2,59062900,59063189,+,AluSx3,SINE,Alu,1,287,-24,59062900,59063213 +6 + chr2 59063189 59063213 chr2,59063189,59063213,+,(CCAA)n,Simple_repeat,Simple_repeat,1,24,0,59063189,59063213 +6 + chr2 59063593 59063647 chr2,59063593,59063647,-,L2c,LINE,L2,-5,3382,3328,59063588,59066974 -6 - chr2 59063687 59063766 chr2,59063687,59063901,+,MER58A,DNA,hAT-Charlie,1,218,-6,59063687,59063907 +5 + chr2 59218680 59218698 chr2,59218536,59218698,+,MIRb,SINE,MIR,22,185,-83,59218515,59218781 -5 + chr2 59240330 59240341 chr2,59240330,59240437,-,MIR3,SINE,MIR,-73,135,27,59240257,59240463 +2 - chr2 59277728 59277761 chr2,59277728,59277761,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,59277728,59277761 +6 + chr2 59278170 59278255 chr2,59278170,59278255,+,L1MB1,LINE,L1,6082,6167,-1,59272089,59278256 +6 + chr2 59278346 59278458 chr2,59278346,59278458,-,L2a,LINE,L2,-10,3416,3305,59278336,59281762 -6 - chr2 59278460 59279286 chr2,59278460,59279286,-,L1ME1,LINE,L1,-10,6169,5295,59278450,59284580 -6 - chr2 59279313 59279394 chr2,59279313,59279394,+,MIRb,SINE,MIR,130,204,-64,59279184,59279458 +6 + chr2 59322258 59322268 chr2,59322179,59322268,+,5S,rRNA,rRNA,1,89,-32,59322179,59322300 -4 + chr2 59435313 59435363 chr2,59435313,59435492,-,X9_LINE,LINE,L1,-633,303,112,59434680,59435603 -4 - chr2 59442199 59442261 chr2,59442199,59442566,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,59442199,59442566 +5 + chr2 59512009 59512205 chr2,59511916,59512514,-,MLT2B5,LTR,ERVL,0,717,72,59511916,59512585 +3 - chr2 59827146 59827221 chr2,59827070,59827221,-,MIRc,SINE,MIR,-94,174,11,59826976,59827231 +4 - chr2 60350595 60350774 chr2,60350574,60350774,-,L1ME4b,LINE,L1,-2,890,660,60350572,60351433 +5 - chr2 60351140 60351293 chr2,60351140,60351293,+,MIR3,SINE,MIR,19,171,-37,60351122,60351330 -6 + chr2 60351825 60351944 chr2,60351825,60351944,-,MIR3,SINE,MIR,-6,202,81,60351819,60352024 +6 - chr2 60359577 60359748 chr2,60359577,60359748,-,MamRep434,DNA,TcMar-Tigger,-172,254,79,60359405,60359826 +5 - chr2 60844057 60844149 chr2,60843968,60844149,-,MIRc,SINE,MIR,-75,193,3,60843893,60844151 +4 - chr2 60847760 60847917 chr2,60847639,60847917,+,L2a,LINE,L2,3116,3426,0,60844524,60847917 -5 + chr2 60848153 60848203 chr2,60848153,60848203,+,PABL_B,LTR,ERV1,1,50,-617,60848153,60848820 -6 + chr2 60848681 60848838 chr2,60848681,60848838,+,PABL_B,LTR,ERV1,512,667,0,60848170,60848838 -6 + chr2 60849117 60849234 chr2,60849117,60849441,+,AluSz,SINE,Alu,1,312,0,60849117,60849441 -2 + chr2 60926306 60926462 chr2,60926306,60926462,+,L2b,LINE,L2,1909,2064,-1355,60924398,60927817 +6 + chr2 60926933 60927044 chr2,60926933,60927044,+,L2b,LINE,L2,2996,3126,-261,60923938,60927305 +6 + chr2 60927126 60927198 chr2,60927126,60927198,+,L2b,LINE,L2,3286,3356,-19,60923841,60927217 +6 + chr2 60927377 60927402 chr2,60927377,60927402,+,(CA)n,Simple_repeat,Simple_repeat,1,26,0,60927377,60927402 +6 + chr2 60927617 60927707 chr2,60927617,60927707,-,L2c,LINE,L2,-16,3371,3289,60927601,60930995 -6 - chr2 60927710 60927877 chr2,60927710,60927877,-,L1ME3,LINE,L1,-1,6161,5995,60927709,60933871 -6 - chr2 60927923 60927968 chr2,60927923,60927968,-,Tigger19b,DNA,TcMar-Tigger,-388,162,117,60927535,60928084 -6 - chr2 60928036 60928170 chr2,60928036,60928170,+,FLAM_C,SINE,Alu,1,135,-8,60928036,60928178 +6 + chr2 60928170 60929829 chr2,60928170,60929829,+,L1PA2,LINE,L1,4488,6152,-3,60923683,60929832 +6 + chr2 60929853 60930004 chr2,60929853,60930004,+,AluJb,SINE,Alu,136,294,-18,60929718,60930022 +6 + chr2 60930134 60930228 chr2,60930134,60930228,+,MIRc,SINE,MIR,154,251,-17,60929981,60930245 +6 + chr2 61134137 61134192 chr2,61134106,61134192,-,MIR1_Amn,SINE,MIR,-63,167,70,61134043,61134261 -2 - chr2 61134214 61134276 chr2,61134214,61134305,+,MIR,SINE,MIR,166,262,0,61134049,61134305 +4 + chr2 61141592 61141701 chr2,61141579,61141701,+,L2,LINE,L2,1899,2024,-1395,61139681,61143096 -5 + chr2 61141833 61142140 chr2,61141833,61142140,+,AluSx,SINE,Alu,1,309,-3,61141833,61142143 -6 + chr2 61142310 61142567 chr2,61142310,61142567,-,MER4E1,LTR,ERV1,0,781,522,61142310,61143088 +6 - chr2 61142567 61142866 chr2,61142567,61142866,-,AluSx,SINE,Alu,-13,299,1,61142554,61142866 +6 - chr2 61142866 61143397 chr2,61142866,61143397,-,MER4E1,LTR,ERV1,-260,521,3,61142606,61143399 +6 - chr2 61143544 61143566 chr2,61143544,61143566,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,61143544,61143566 -5 + chr2 61143962 61143985 chr2,61143962,61143985,+,(AG)n,Simple_repeat,Simple_repeat,1,23,0,61143962,61143985 -6 + chr2 61143985 61144266 chr2,61143985,61144267,-,AluY,SINE,Alu,-30,281,1,61143955,61144267 +2 - chr2 61144406 61144642 chr2,61144362,61144663,+,AluSx,SINE,Alu,1,299,-13,61144362,61144676 -5 + chr2 61151433 61151714 chr2,61151382,61151856,-,MLT1F1,LTR,ERVL-MaLR,0,569,65,61151382,61151920 +5 - chr2 61151816 61151856 chr2,61151382,61151856,-,MLT1F1,LTR,ERVL-MaLR,0,569,65,61151382,61151920 +5 - chr2 61151939 61152128 chr2,61151939,61152135,-,L4_A_Mam,LINE,RTE-X,-4656,334,103,61147283,61152237 +2 - chr2 61161698 61161835 chr2,61161329,61161835,-,L1MB3,LINE,L1,-2096,4044,3526,61159233,61165360 +5 - chr2 61200069 61200268 chr2,61200069,61200268,-,AluJr,SINE,Alu,-30,282,87,61200039,61200354 -6 - chr2 61480300 61480580 chr2,61480279,61480580,-,AluSq2,SINE,Alu,-13,300,1,61480266,61480580 -5 - chr2 61482627 61482921 chr2,61482597,61482921,-,AluSx3,SINE,Alu,-4,307,2,61482593,61482922 -5 - chr2 61483373 61483560 chr2,61483300,61483560,+,L1PB2,LINE,L1,5927,6151,0,61477374,61483560 +1 + chr2 61868854 61868865 chr2,61868854,61869171,+,AluSg,SINE,Alu,1,310,0,61868854,61869171 +4 + chr2 61885881 61885966 chr2,61885881,61885966,-,Tigger4a,DNA,TcMar-Tigger,-6,230,168,61885875,61886133 -6 - chr2 61885966 61886023 chr2,61885966,61886023,+,L2a,LINE,L2,3269,3338,-88,61882698,61886111 +6 + chr2 62069944 62070183 chr2,62069944,62070183,-,MER21C,LTR,ERVL,-106,832,600,62069838,62070782 +6 - chr2 62070183 62070272 chr2,62070183,62070272,+,MER8,DNA,TcMar-Tigger,1,89,-150,62070183,62070422 -6 + chr2 62070273 62070382 chr2,62070273,62070564,+,AluJr,SINE,Alu,1,299,-13,62070273,62070577 -2 + chr2 62100188 62100323 chr2,62098410,62100323,-,ERV24_Prim-int,LTR,ERV1,-5572,2003,1,62092838,62100323 +4 - chr2 62100328 62100340 chr2,62100328,62101128,-,MER4E1,LTR,ERV1,-10,771,1,62100318,62101128 +2 - chr2 62118244 62118311 chr2,62118244,62118347,+,MIRc,SINE,MIR,163,265,-3,62118082,62118350 -2 + chr2 62118976 62119034 chr2,62118976,62119356,+,MLT1B,LTR,ERVL-MaLR,15,390,0,62118962,62119356 -2 + chr2 62146382 62146412 chr2,62146382,62146412,-,LTR6A,LTR,ERV1,-462,102,73,62145920,62146484 +6 - chr2 62463127 62463202 chr2,62463062,62463202,-,L2c,LINE,L2,-3,3384,3247,62463059,62466448 -1 - chr2 62463242 62463318 chr2,62463242,62463369,+,MIRc,SINE,MIR,23,155,-113,62463220,62463482 +4 + chr2 62463839 62464070 chr2,62463643,62464493,+,LTR1D,LTR,ERV1,1,975,0,62463643,62464493 +5 + chr2 62590255 62590357 chr2,62590212,62590357,+,MIR3,SINE,MIR,7,160,-48,62590206,62590405 -5 + chr2 62590451 62590577 chr2,62590451,62590810,+,Tigger20a,DNA,TcMar-Tigger,10,400,-573,62590442,62591383 -2 + chr2 62611872 62612101 chr2,62611834,62612101,+,Charlie13a,DNA,hAT-Charlie,184,486,-1028,62611651,62613129 -5 + chr2 62612316 62612391 chr2,62612229,62612715,+,Charlie13a,DNA,hAT-Charlie,644,1161,-353,62611586,62613068 -3 + chr2 62624953 62625011 chr2,62624870,62625011,+,MER5B,DNA,hAT-Charlie,31,176,-2,62624840,62625013 -3 + chr2 62629367 62629476 chr2,62629367,62629546,-,MLT1E2-int,LTR,ERVL-MaLR,-119,1252,1077,62629248,62630622 +2 - chr2 62631402 62631565 chr2,62631221,62631578,-,ERV3-16A3_I-int,LTR,ERVL,-2415,2811,2447,62628806,62634024 +3 - chr2 62661895 62661933 chr2,62661822,62662064,-,MIR,SINE,MIR,-18,244,1,62661804,62662064 +3 - chr2 63043922 63043971 chr2,63043920,63043971,+,(T)n,Simple_repeat,Simple_repeat,1,51,0,63043920,63043971 -5 + chr2 63044261 63044279 chr2,63044261,63044279,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,63044261,63044279 -6 + chr2 63517892 63518187 chr2,63517877,63518187,-,AluSz,SINE,Alu,-2,310,1,63517875,63518187 +5 - chr2 63518268 63519268 chr2,63518268,63520611,+,L1PA13,LINE,L1,97,2475,-4310,63518172,63524921 -1 + chr2 64201748 64201826 chr2,64201709,64201826,-,L2a,LINE,L2,-1,3425,3301,64201708,64205126 -2 - chr2 64201837 64201894 chr2,64201837,64201963,+,MER94,DNA,hAT-Blackjack,5,134,0,64201833,64201963 +4 + chr2 64204867 64205109 chr2,64204867,64205109,-,MIRb,SINE,MIR,-10,258,10,64204857,64205118 +6 - chr2 64226447 64226492 chr2,64225722,64226559,-,L3,LINE,CR1,-46,4053,3069,64225676,64229627 -3 - chr2 64229171 64229288 chr2,64229086,64229410,-,Tigger3a,DNA,TcMar-Tigger,0,348,3,64229086,64229412 -3 - chr2 64248324 64248538 chr2,64248172,64248784,+,L1PA11,LINE,L1,5562,6174,0,64242611,64248784 +5 + chr2 64252420 64252859 chr2,64252413,64252895,+,LTR7,LTR,ERV1,1,448,-2,64252413,64252897 +5 + chr2 64332099 64332131 chr2,64332099,64332298,+,MLT1A0,LTR,ERVL-MaLR,162,365,0,64331938,64332298 -1 + chr2 64338067 64338144 chr2,64337909,64338144,+,MIR,SINE,MIR,2,268,0,64337908,64338144 -5 + chr2 64341535 64341631 chr2,64341369,64341631,+,L2b,LINE,L2,2726,3015,-404,64338644,64342035 -4 + chr2 64395220 64395486 chr2,64395185,64395486,+,AluSz6,SINE,Alu,1,300,-12,64395185,64395498 -5 + chr2 64398276 64398374 chr2,64398232,64398439,+,MLT1J2,LTR,ERVL-MaLR,2,225,-287,64398231,64398726 -3 + chr2 64488785 64488842 chr2,64488785,64488923,+,MER5A,DNA,hAT-Charlie,1,163,-26,64488785,64488949 +4 + chr2 64522187 64522220 chr2,64522004,64522220,+,L1ME4c,LINE,L1,245,478,-352,64521760,64522572 -5 + chr2 64522716 64522764 chr2,64522716,64522764,-,AluJo,SINE,Alu,-22,290,243,64522694,64523006 +6 - chr2 64612766 64612785 chr2,64612694,64612785,-,MIRb,SINE,MIR,-53,215,120,64612641,64612904 -2 - chr2 64615299 64615558 chr2,64615299,64615558,+,MIRb,SINE,MIR,1,254,-14,64615299,64615572 +6 + chr2 64616458 64616482 chr2,64616458,64616488,+,(TGAA)n,Simple_repeat,Simple_repeat,1,30,0,64616458,64616488 +5 + chr2 64846625 64846713 chr2,64846625,64846713,-,MIR3,SINE,MIR,-75,133,50,64846550,64846762 +6 - chr2 64846720 64846864 chr2,64846720,64846864,-,L2a,LINE,L2,0,3426,3269,64846720,64850132 +6 - chr2 64846865 64847042 chr2,64846865,64847042,+,MER104,DNA,TcMar-Tc2,1,178,-3,64846865,64847045 -6 + chr2 64847324 64847600 chr2,64847324,64847600,-,MLT1J,LTR,ERVL-MaLR,-147,463,196,64847177,64847795 +6 - chr2 64863414 64863626 chr2,64862833,64863685,+,L2a,LINE,L2,2093,3198,-228,64860741,64863913 -1 + chr2 64901857 64901910 chr2,64901857,64901910,-,L1ME4b,LINE,L1,0,892,839,64901857,64902748 +6 - chr2 64902018 64902120 chr2,64902018,64902120,-,MER5A,DNA,hAT-Charlie,0,189,87,64902018,64902206 +6 - chr2 64902131 64902232 chr2,64902131,64902232,+,(TTTC)n,Simple_repeat,Simple_repeat,1,106,0,64902131,64902232 -6 + chr2 64902236 64902511 chr2,64902236,64902511,-,AluSp,SINE,Alu,-35,278,1,64902201,64902511 +6 - chr2 64902512 64902586 chr2,64902512,64902586,-,MER5A,DNA,hAT-Charlie,-113,76,3,64902399,64902588 +6 - chr2 64902620 64902638 chr2,64902620,64902638,+,(CT)n,Simple_repeat,Simple_repeat,1,18,0,64902620,64902638 -6 + chr2 64902691 64902910 chr2,64902691,64902910,+,L2c,LINE,L2,3009,3242,-145,64899683,64903055 -6 + chr2 64903078 64903482 chr2,64903078,64903482,+,LTR78,LTR,ERV1,184,646,-658,64902895,64904140 -6 + chr2 64903527 64903598 chr2,64903527,64903598,+,LTR78,LTR,ERV1,736,809,-495,64902792,64904093 -6 + chr2 64903746 64903936 chr2,64903746,64903936,+,LTR78,LTR,ERV1,1011,1201,-103,64902736,64904039 -6 + chr2 64904280 64904530 chr2,64904280,64904530,-,MER102c,DNA,hAT-Charlie,0,331,85,64904280,64904614 +6 - chr2 65037403 65037433 chr2,65037307,65037433,+,MLT1K,LTR,ERVL-MaLR,96,232,-310,65037212,65037743 +2 + chr2 65037477 65037497 chr2,65037477,65037925,+,L2c,LINE,L2,2543,3060,-327,65034935,65038252 +5 + chr2 65052380 65052417 chr2,65051667,65052417,-,L1MB8,LINE,L1,-621,5625,5355,65051046,65057771 -2 - chr2 65052434 65052749 chr2,65052434,65052749,+,AluSx1,SINE,Alu,1,312,0,65052434,65052749 +6 + chr2 65442055 65442113 chr2,65441954,65442113,+,(GGTGAT)n,Simple_repeat,Simple_repeat,1,160,0,65441954,65442113 -5 + chr2 65442226 65442501 chr2,65442226,65442535,+,AluSc,SINE,Alu,1,308,-1,65442226,65442536 -5 + chr2 65450199 65450238 chr2,65450199,65450238,+,(CAT)n,Simple_repeat,Simple_repeat,1,40,0,65450199,65450238 -6 + chr2 65450475 65450706 chr2,65450475,65450706,+,L2,LINE,L2,1907,2162,-1257,65448569,65451963 -5 + chr2 65453883 65453982 chr2,65453715,65454019,+,AluJb,SINE,Alu,3,312,0,65453713,65454019 -3 + chr2 65455512 65455765 chr2,65455461,65455765,+,MLT1J,LTR,ERVL-MaLR,97,412,-100,65455365,65455865 -1 + chr2 65455887 65455923 chr2,65455887,65456430,+,L2,LINE,L2,2174,2767,-652,65453714,65457082 -1 + chr2 65456019 65456430 chr2,65455887,65456430,+,L2,LINE,L2,2174,2767,-652,65453714,65457082 -1 + chr2 65469514 65469611 chr2,65469478,65469769,-,AluSz,SINE,Alu,-22,290,1,65469456,65469769 -3 - chr2 65476258 65476275 chr2,65476234,65476275,-,AluSc,SINE,Alu,-33,276,236,65476201,65476510 -2 - chr2 65476275 65476349 chr2,65476275,65476365,-,LTR12F,LTR,ERV1,0,519,441,65476275,65476805 -4 - chr2 65483060 65483152 chr2,65482892,65483261,-,L1ME1,LINE,L1,-188,5991,5588,65482704,65488848 -3 - chr2 65589566 65589676 chr2,65589522,65589676,-,LTR16B2,LTR,ERVL,0,462,302,65589522,65589977 +5 - chr2 65589764 65589819 chr2,65589764,65589949,-,L2,LINE,L2,-570,2849,2659,65589194,65592607 +2 - chr2 65601157 65601831 chr2,65599971,65601831,-,SVA_D,Retroposon,SVA,0,1386,57,65599971,65601887 +4 - chr2 65601831 65601861 chr2,65601831,65601861,+,(GGGAGA)n,Simple_repeat,Simple_repeat,1,30,0,65601831,65601861 -6 + chr2 65602108 65602362 chr2,65602108,65602405,+,AluSp,SINE,Alu,1,298,-15,65602108,65602420 -2 + chr2 65640115 65640177 chr2,65640115,65640414,-,AluSc,SINE,Alu,-10,299,1,65640105,65640414 +1 - chr2 65692003 65692164 chr2,65692003,65692164,+,MIRb,SINE,MIR,95,253,-15,65691909,65692179 +6 + chr2 65731675 65731950 chr2,65731354,65731976,-,LTR9,LTR,ERV1,0,612,1,65731354,65731976 -1 - chr2 65733003 65733041 chr2,65733003,65733135,-,MER94,DNA,hAT-Blackjack,0,134,1,65733003,65733135 -5 - chr2 65733275 65733389 chr2,65733275,65733647,+,MLT1J2,LTR,ERVL-MaLR,65,447,-1,65733211,65733648 +4 + chr2 65790911 65791061 chr2,65790911,65791061,-,MIRc,SINE,MIR,-3,265,115,65790908,65791175 -6 - chr2 65791248 65791276 chr2,65791248,65791276,+,(ATG)n,Simple_repeat,Simple_repeat,1,28,0,65791248,65791276 +6 + chr2 65791857 65791930 chr2,65791857,65791930,-,L3,LINE,CR1,-19,4080,3996,65791838,65795925 -6 - chr2 65792314 65792355 chr2,65792314,65792355,-,MIR,SINE,MIR,-10,252,212,65792304,65792566 -6 - chr2 65792536 65792610 chr2,65792536,65792610,-,Kanga1d,DNA,TcMar-Tc2,-5,604,534,65792531,65793143 -6 - chr2 65792634 65792798 chr2,65792634,65792798,+,L1MEd,LINE,L1,314,481,-6605,65792321,65799403 +6 + chr2 65792798 65793151 chr2,65792798,65793151,+,Tigger4b,DNA,TcMar-Tigger,1,361,0,65792798,65793151 +6 + chr2 65793151 65793240 chr2,65793151,65793240,+,L1MEd,LINE,L1,482,567,-6519,65792670,65799759 +6 + chr2 65793304 65793399 chr2,65793304,65793399,-,Kanga1d,DNA,TcMar-Tc2,-506,103,6,65792798,65793404 -6 - chr2 66016269 66016409 chr2,66016214,66016436,+,MER20B,DNA,hAT-Charlie,3,244,-539,66016212,66016975 +3 + chr2 66072504 66072652 chr2,66072323,66072829,-,LTR16E2,LTR,ERVL,-2,566,17,66072321,66072845 -5 - chr2 66084510 66084639 chr2,66084216,66084687,+,MamGypsy2-I,LTR,Gypsy,2075,2576,-1590,66082142,66086277 +5 + chr2 66390932 66390985 chr2,66390932,66390985,+,MER5A,DNA,hAT-Charlie,74,126,-63,66390859,66391048 +6 + chr2 66391130 66392450 chr2,66391130,66397150,+,L1PA2,LINE,L1,125,6155,0,66391006,66397150 +5 + chr2 66439088 66439103 chr2,66439055,66439103,+,(T)n,Simple_repeat,Simple_repeat,1,48,0,66439055,66439103 -5 + chr2 66441793 66441821 chr2,66441793,66441821,+,(TCTCT)n,Simple_repeat,Simple_repeat,1,29,0,66441793,66441821 -6 + chr2 66574030 66574045 chr2,66574028,66574045,+,G-rich,Low_complexity,Low_complexity,68,100,0,66573961,66574045 +1 + chr2 66675758 66675821 chr2,66675595,66675861,-,L3b,LINE,CR1,-118,5114,4855,66675477,66680715 -3 - chr2 66713490 66713541 chr2,66713490,66713791,+,AluY,SINE,Alu,1,300,-11,66713490,66713802 +4 + chr2 66921546 66921629 chr2,66921546,66921629,+,L3,LINE,CR1,1336,1422,-2677,66920211,66924306 -6 + chr2 66921744 66921759 chr2,66921744,66921814,+,(TATG)n,Simple_repeat,Simple_repeat,1,70,0,66921744,66921814 +4 + chr2 66922165 66922215 chr2,66922004,66922215,+,MamRep38,DNA,hAT,68,268,-27,66921937,66922242 -4 + chr2 66922429 66922449 chr2,66922429,66922449,+,(TG)n,Simple_repeat,Simple_repeat,1,20,0,66922429,66922449 -6 + chr2 66933103 66933249 chr2,66932559,66933322,-,L2a,LINE,L2,-93,3333,2545,66932466,66935866 -3 - chr2 67040546 67040589 chr2,67040545,67040589,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,67040545,67040589 +1 + chr2 67040598 67040660 chr2,67040598,67040660,+,(ATCC)n,Simple_repeat,Simple_repeat,1,63,0,67040598,67040660 +6 + chr2 67040660 67040841 chr2,67040660,67040841,-,MER53,DNA,hAT,0,193,1,67040660,67040841 -6 - chr2 67041047 67041065 chr2,67041047,67041201,+,MIR,SINE,MIR,77,248,-14,67040971,67041215 +4 + chr2 67041920 67041965 chr2,67041421,67041965,+,MLT1L,LTR,ERVL-MaLR,3,610,0,67041419,67041965 +2 + chr2 67086446 67086555 chr2,67086398,67086624,+,MLT1B,LTR,ERVL-MaLR,172,391,-17,67086227,67086641 +1 + chr2 67087013 67087087 chr2,67086787,67087087,+,AluY,SINE,Alu,1,301,-10,67086787,67087097 +1 + chr2 67121812 67121846 chr2,67121384,67121846,-,L1PA5,LINE,L1,-1588,4558,4097,67119796,67125942 -2 - chr2 67121845 67121870 chr2,67121845,67122630,-,L1ME1,LINE,L1,-5545,855,51,67116300,67122680 -4 - chr2 67124481 67124564 chr2,67124481,67124564,+,(ATGTAT)n,Simple_repeat,Simple_repeat,1,83,0,67124481,67124564 -6 + chr2 67148337 67148437 chr2,67148186,67148628,+,L1MA1,LINE,L1,2,462,-7103,67148185,67155731 -3 + chr2 67164537 67164587 chr2,67164324,67164662,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,67164324,67164662 -3 + chr2 67177582 67177676 chr2,67177475,67177676,+,L2,LINE,L2,2142,2353,-1066,67175334,67178742 -4 + chr2 67177687 67177883 chr2,67177687,67177883,-,LTR16C,LTR,ERVL,-5,484,276,67177682,67178158 +6 - chr2 67181132 67181188 chr2,67181132,67181188,-,MamRTE1,LINE,RTE-BovB,-524,3288,3234,67180608,67184421 -6 - chr2 67244367 67244433 chr2,67244367,67244433,+,MamSINE1,SINE,tRNA-RTE,51,115,-175,67244317,67244608 +6 + chr2 67252618 67252888 chr2,67252590,67252979,-,L2c,LINE,L2,-2,3373,3007,67252588,67255985 -1 - chr2 67264997 67265108 chr2,67264789,67265108,-,AluJr,SINE,Alu,0,312,2,67264789,67265109 -2 - chr2 67287756 67287817 chr2,67287582,67287817,+,LTR16E1,LTR,ERVL,266,529,-9,67287317,67287826 +2 + chr2 67289083 67289107 chr2,67288991,67289107,+,MER105,DNA,hAT-Charlie,71,201,-2,67288921,67289109 +2 + chr2 67324796 67324879 chr2,67324796,67324879,+,GA-rich,Low_complexity,Low_complexity,1,88,0,67324796,67324879 +6 + chr2 67566776 67566864 chr2,67566342,67566864,-,MLT1F2,LTR,ERVL-MaLR,-7,553,1,67566335,67566864 -2 - chr2 67566864 67566972 chr2,67566864,67567460,-,L2a,LINE,L2,-128,3298,2668,67566736,67570127 -4 - chr2 67796282 67796464 chr2,67796282,67796464,+,MER5A,DNA,hAT-Charlie,4,189,0,67796279,67796464 -6 + chr2 68253596 68253637 chr2,68253596,68253637,+,(GT)n,Simple_repeat,Simple_repeat,1,41,0,68253596,68253637 +6 + chr2 68361214 68361593 chr2,68361167,68361593,-,LTR37A,LTR,ERV1,0,426,18,68361167,68361610 +5 - chr2 68361725 68362014 chr2,68361725,68362014,+,AluSx,SINE,Alu,1,290,-22,68361725,68362036 -6 + chr2 68362302 68362367 chr2,68362302,68362367,+,L2c,LINE,L2,3309,3383,-4,68358994,68362371 -6 + chr2 68836792 68837000 chr2,68836792,68837000,-,MER30,DNA,hAT-Charlie,0,230,1,68836792,68837000 +6 - chr2 68837625 68837668 chr2,68837625,68837668,+,MIR,SINE,MIR,29,70,-192,68837597,68837860 +6 + chr2 69700235 69700375 chr2,69700235,69700394,+,AluJr,SINE,Alu,137,300,-12,69700099,69700406 -2 + chr2 69713612 69713626 chr2,69713557,69713626,-,MER63B,DNA,hAT-Blackjack,-358,78,9,69713199,69713634 +4 - chr2 69713652 69713847 chr2,69713652,69713954,-,MamGypLTR1a,LTR,Gypsy,-444,340,52,69713208,69714005 +1 - chr2 69968399 69968516 chr2,69968250,69968548,+,AluSz6,SINE,Alu,1,307,-5,69968250,69968553 -3 + chr2 69970884 69971177 chr2,69970884,69971177,+,AluSx1,SINE,Alu,1,293,-19,69970884,69971196 -6 + chr2 69971183 69971282 chr2,69971183,69971397,-,MER112,DNA,hAT-Charlie,-15,246,5,69971168,69971401 +1 - chr2 69996862 69996890 chr2,69996862,69997025,+,L3b,LINE,CR1,4803,4977,-255,69992060,69997280 -5 + chr2 70011655 70011904 chr2,70011344,70011904,-,L2c,LINE,L2,-666,2753,2141,70010678,70014044 +4 - chr2 70011992 70012030 chr2,70011992,70012030,-,MIR3,SINE,MIR,-62,146,109,70011930,70012138 +6 - chr2 70012085 70012158 chr2,70012085,70012158,+,Charlie1a,DNA,hAT-Charlie,5,73,-1382,70012081,70013540 -6 + chr2 70012158 70012216 chr2,70012158,70012453,-,AluY,SINE,Alu,-15,296,1,70012143,70012453 +1 - chr2 70015448 70015580 chr2,70015352,70015583,+,MER8,DNA,TcMar-Tigger,1,239,0,70015352,70015583 -5 + chr2 70018015 70018131 chr2,70017857,70018135,+,AluSx3,SINE,Alu,1,282,-29,70017857,70018164 -5 + chr2 70018977 70019143 chr2,70018191,70020062,+,L1MA8,LINE,L1,4408,6279,-12,70013784,70020074 -1 + chr2 70030848 70031074 chr2,70030848,70031074,-,L2c,LINE,L2,-3,3384,3158,70030845,70034231 +6 - chr2 70031158 70031249 chr2,70031158,70031249,-,MIRb,SINE,MIR,-8,260,168,70031150,70031416 +6 - chr2 70031331 70031415 chr2,70031331,70031415,-,MLT1K,LTR,ERVL-MaLR,-3,592,520,70031328,70031934 +6 - chr2 70031415 70031709 chr2,70031415,70031709,+,AluY,SINE,Alu,1,295,-16,70031415,70031725 -5 + chr2 70031709 70031955 chr2,70031709,70032014,-,MLT1K,LTR,ERVL-MaLR,-76,519,221,70031633,70032234 +5 - chr2 70032131 70032180 chr2,70032064,70032180,-,MLT1K,LTR,ERVL-MaLR,-471,124,6,70031593,70032185 +5 - chr2 70045259 70045408 chr2,70045191,70045408,+,MIRb,SINE,MIR,4,231,-37,70045188,70045445 -5 + chr2 70045678 70045915 chr2,70045678,70045915,+,AluSz,SINE,Alu,39,276,-36,70045640,70045951 -6 + chr2 70046764 70046796 chr2,70046764,70047032,+,MamTip1,DNA,hAT-Tip100,5,265,-2,70046760,70047034 -2 + chr2 70048687 70048957 chr2,70048643,70049028,-,MLT1C,LTR,ERVL-MaLR,-3,464,64,70048640,70049091 +5 - chr2 70049045 70049199 chr2,70049040,70049199,-,L1PA3,LINE,L1,-3,6152,5994,70049037,70055192 +5 - chr2 70049200 70049262 chr2,70049200,70049262,-,MLT1C,LTR,ERVL-MaLR,-386,81,7,70048814,70049268 +6 - chr2 70049283 70049364 chr2,70049283,70049364,+,MIR,SINE,MIR,187,262,0,70049097,70049364 -6 + chr2 70049685 70049892 chr2,70049685,70049892,+,MARNA,DNA,TcMar-Mariner,179,386,-200,70049507,70050092 -5 + chr2 70050001 70050268 chr2,70050001,70050305,+,AluSg,SINE,Alu,1,310,0,70050001,70050305 -5 + chr2 70050600 70050619 chr2,70050305,70050619,+,L1M5,LINE,L1,4944,5248,-898,70045362,70051517 -5 + chr2 70050623 70050667 chr2,70050623,70050667,+,L1M5,LINE,L1,5276,5326,-798,70045348,70051465 -6 + chr2 70050667 70050958 chr2,70050667,70050958,+,AluJr,SINE,Alu,1,298,-14,70050667,70050972 -5 + chr2 70050958 70051082 chr2,70050958,70051082,+,L1M5,LINE,L1,5327,5454,-670,70045632,70051752 -5 + chr2 70051085 70051291 chr2,70051085,70051291,-,MIR,SINE,MIR,-42,220,5,70051043,70051295 +5 - chr2 70051293 70051305 chr2,70051293,70051567,+,L1ME4b,LINE,L1,191,486,-406,70051103,70051973 -2 + chr2 70054052 70054180 chr2,70054052,70054304,+,AluSg4,SINE,Alu,3,293,-17,70054050,70054321 -1 + chr2 70055617 70055775 chr2,70055322,70055775,+,L1PA8A,LINE,L1,5683,6131,0,70049640,70055775 -5 + chr2 70055796 70055910 chr2,70055796,70055928,+,AluJr4,SINE,Alu,1,133,-179,70055796,70056107 -1 + chr2 70059643 70059961 chr2,70059475,70059961,-,MER1A,DNA,hAT-Charlie,-5,524,1,70059470,70059961 +1 - chr2 70060059 70060106 chr2,70060059,70060359,+,AluSx,SINE,Alu,1,301,-11,70060059,70060370 -1 + chr2 70070290 70070505 chr2,70070228,70070505,+,L1MEj,LINE,L1,1089,1380,-780,70069140,70071285 -4 + chr2 70070515 70070802 chr2,70070515,70070813,+,AluSg,SINE,Alu,1,310,0,70070515,70070813 -1 + chr2 70081370 70081490 chr2,70081294,70081508,+,AluSc8,SINE,Alu,83,296,-15,70081212,70081523 -3 + chr2 70083605 70083646 chr2,70083605,70083646,+,MIR,SINE,MIR,104,144,-118,70083502,70083764 -6 + chr2 70085547 70085755 chr2,70085547,70085755,+,MIR,SINE,MIR,38,250,-12,70085510,70085767 -1 + chr2 70095052 70095166 chr2,70095052,70095198,+,MIR1_Amn,SINE,MIR,9,156,-112,70095044,70095310 -1 + chr2 70103190 70103220 chr2,70103170,70103438,-,L1M5,LINE,L1,-549,5575,5274,70102621,70108711 +1 - chr2 70302018 70302051 chr2,70302018,70302051,+,(CCGCG)n,Simple_repeat,Simple_repeat,1,33,0,70302018,70302051 +6 + chr2 70402945 70403136 chr2,70402945,70404251,+,L1PB1,LINE,L1,254,1573,-5289,70402692,70409540 +4 + chr2 70418950 70419000 chr2,70418905,70419030,-,MIRc,SINE,MIR,-84,184,52,70418821,70419081 -3 - chr2 70422403 70422436 chr2,70422169,70422436,-,L1ME4b,LINE,L1,-548,344,65,70421621,70422500 -2 - chr2 70687142 70687235 chr2,70687135,70687235,-,MIRb,SINE,MIR,-116,152,46,70687019,70687280 -1 - chr2 70887871 70887904 chr2,70887853,70887904,+,(CTCCCGCG)n,Simple_repeat,Simple_repeat,1,57,0,70887853,70887904 +1 + chr2 70887937 70887962 chr2,70887937,70887962,+,(CCTTT)n,Simple_repeat,Simple_repeat,1,26,0,70887937,70887962 +6 + chr2 70889477 70889574 chr2,70889477,70889574,+,L1ME4b,LINE,L1,201,296,-596,70889277,70890170 +6 + chr2 70889821 70889839 chr2,70889815,70889839,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,70889815,70889839 +2 + chr2 70889839 70889959 chr2,70889839,70890148,+,AluJr4,SINE,Alu,1,302,-10,70889839,70890158 +5 + chr2 70942068 70942096 chr2,70942068,70942096,+,(AG)n,Simple_repeat,Simple_repeat,1,28,0,70942068,70942096 -6 + chr2 70948240 70948381 chr2,70948240,70948381,-,AluSc,SINE,Alu,-13,296,156,70948227,70948536 +6 - chr2 71002591 71002618 chr2,71002591,71002618,+,(AGAA)n,Simple_repeat,Simple_repeat,1,28,0,71002591,71002618 +6 + chr2 71002673 71002729 chr2,71002673,71002729,+,AluJo,SINE,Alu,249,304,-8,71002425,71002737 +6 + chr2 71004905 71004963 chr2,71004905,71004963,+,MER5B,DNA,hAT-Charlie,75,134,-44,71004831,71005007 -6 + chr2 71067519 71067535 chr2,71067463,71067535,+,(ATATGAT)n,Simple_repeat,Simple_repeat,1,76,0,71067463,71067535 -5 + chr2 73113722 73113768 chr2,73113722,73113768,-,MIRb,SINE,MIR,-10,258,215,73113712,73113982 -6 - chr2 73113789 73113944 chr2,73113789,73113944,-,MIRc,SINE,MIR,-1,261,116,73113788,73114059 -6 - chr2 73114029 73114323 chr2,73114029,73114323,-,HAL1,LINE,L1,-7,2500,2129,73114022,73116451 -6 - chr2 73114335 73114849 chr2,73114335,73114849,+,MER1A,DNA,hAT-Charlie,1,525,-4,73114335,73114853 +6 + chr2 73115112 73115260 chr2,73115112,73115260,+,MIRb,SINE,MIR,29,169,-99,73115084,73115359 +6 + chr2 73115262 73115558 chr2,73115262,73115558,+,AluSz6,SINE,Alu,2,296,-16,73115261,73115574 +6 + chr2 73115561 73115857 chr2,73115561,73115857,+,AluSz,SINE,Alu,1,296,-16,73115561,73115873 +6 + chr2 73115860 73115907 chr2,73115860,73115959,-,L1ME4a,LINE,L1,-84,6040,5935,73115776,73121893 -5 - chr2 73456903 73457238 chr2,73456903,73457238,-,L3,LINE,CR1,-410,3689,3361,73456493,73460598 -6 - chr2 73457238 73457326 chr2,73457238,73457522,-,AluSz,SINE,Alu,-19,293,21,73457219,73457542 -4 - chr2 73457941 73458053 chr2,73457750,73458053,+,AluSz,SINE,Alu,1,302,-10,73457750,73458063 +2 + chr2 73458180 73458230 chr2,73458180,73458230,-,L3,LINE,CR1,-1204,2895,2847,73456976,73461076 -6 - chr2 73458290 73458383 chr2,73458290,73458383,-,L1M5,LINE,L1,-279,5845,5742,73458011,73464124 -6 - chr2 73458383 73458780 chr2,73458383,73458780,-,L2a,LINE,L2,-1,3425,2958,73458382,73461737 -6 - chr2 73458798 73459036 chr2,73458798,73459036,+,MER20B,DNA,hAT-Charlie,1,240,-543,73458798,73459579 +6 + chr2 73459049 73459484 chr2,73459049,73460128,-,L1MC4,LINE,L1,-405,7637,6468,73458644,73466595 -5 - chr2 73750636 73750786 chr2,73750636,73751120,+,PrimLTR79,LTR,ERV1,1,503,0,73750636,73751120 -1 + chr2 73761475 73761781 chr2,73761475,73761782,+,AluJb,SINE,Alu,1,303,-9,73761475,73761791 -1 + chr2 73998537 73998548 chr2,73998537,73998586,+,(CTC)n,Simple_repeat,Simple_repeat,1,49,0,73998537,73998586 -1 + chr2 74134624 74135096 chr2,74134624,74135096,-,MLT1N2,LTR,ERVL-MaLR,-43,519,33,74134581,74135128 -6 - chr2 74135177 74135217 chr2,74135177,74135217,+,GA-rich,Low_complexity,Low_complexity,1,40,0,74135177,74135217 +6 + chr2 74148357 74148478 chr2,74148357,74148636,-,L2,LINE,L2,-589,2830,2525,74147768,74151160 -4 - chr2 74149217 74149381 chr2,74149217,74149381,+,MLT1K,LTR,ERVL-MaLR,78,290,-305,74149140,74149686 +6 + chr2 74149381 74149577 chr2,74149381,74149577,-,L1PA16,LINE,L1,-3,6163,5964,74149378,74155540 -6 - chr2 74149577 74149749 chr2,74149577,74149749,+,MLT1K,LTR,ERVL-MaLR,291,479,-116,74149287,74149865 +6 + chr2 74149795 74149860 chr2,74149795,74149860,-,L3,LINE,CR1,-1329,2770,2702,74148466,74152561 -6 - chr2 74149864 74150017 chr2,74149864,74150017,+,AluSx,SINE,Alu,1,151,-161,74149864,74150178 +5 + chr2 74150039 74150057 chr2,74150039,74150057,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,74150039,74150057 +6 + chr2 74191472 74191600 chr2,74191472,74191600,-,AluJb,SINE,Alu,-4,308,167,74191468,74191766 -5 - chr2 74191600 74192237 chr2,74191600,74192237,+,LTR9A1,LTR,ERV1,1,728,0,74191600,74192237 +6 + chr2 74196704 74196999 chr2,74196573,74196999,-,L1MC4,LINE,L1,-139,7903,7481,74196434,74204479 +5 - chr2 74197170 74197287 chr2,74197170,74197287,-,L1MC4,LINE,L1,-588,7454,7330,74196582,74204616 +6 - chr2 74197287 74197361 chr2,74197287,74197361,-,MLT1B,LTR,ERVL-MaLR,-61,329,259,74197226,74197619 +6 - chr2 74197361 74197669 chr2,74197361,74197669,-,AluSq,SINE,Alu,-4,309,1,74197357,74197669 +6 - chr2 74197687 74197714 chr2,74197687,74197714,-,L1MC4,LINE,L1,-610,7272,7246,74197077,74204959 +6 - chr2 74197718 74197866 chr2,74197718,74197866,-,MER53,DNA,hAT,-5,188,1,74197713,74197866 +6 - chr2 74197866 74197936 chr2,74197866,74197936,-,L1MC4,LINE,L1,-772,7270,7196,74197094,74205131 +6 - chr2 74197983 74198148 chr2,74197983,74198148,-,AluJb,SINE,Alu,-6,306,143,74197977,74198290 +6 - chr2 74198161 74198216 chr2,74198161,74198216,-,L1MC4,LINE,L1,-868,7174,7119,74197293,74205334 +6 - chr2 74198222 74198296 chr2,74198222,74198296,+,L2a,LINE,L2,3313,3426,0,74194910,74198296 -6 + chr2 74386600 74386696 chr2,74386600,74387901,+,L2c,LINE,L2,1423,2924,-495,74385178,74388396 +5 + chr2 74386819 74387026 chr2,74386600,74387901,+,L2c,LINE,L2,1423,2924,-495,74385178,74388396 +5 + chr2 74391226 74391358 chr2,74391226,74391358,+,L3b,LINE,CR1,5054,5208,-24,74386173,74391382 +6 + chr2 74392179 74392360 chr2,74392179,74392360,+,L1ME3G,LINE,L1,160,296,-628,74392020,74392988 +5 + chr2 74392383 74392700 chr2,74392383,74392700,-,AluJb,SINE,Alu,-11,301,4,74392372,74392703 -6 - chr2 74392700 74392872 chr2,74392700,74392872,+,MIR,SINE,MIR,47,218,-44,74392654,74392916 +6 + chr2 74393028 74393515 chr2,74393028,74393515,-,L1ME4b,LINE,L1,0,892,391,74393028,74393905 -6 - chr2 74393629 74393772 chr2,74393629,74393772,-,L1MB3,LINE,L1,-2,6181,6032,74393627,74399803 -6 - chr2 74833129 74833239 chr2,74833129,74833239,+,MIRb,SINE,MIR,2,110,-158,74833128,74833397 -6 + chr2 74833239 74833522 chr2,74833239,74833522,-,AluJr,SINE,Alu,-20,292,14,74833219,74833535 +6 - chr2 74833522 74833596 chr2,74833522,74833596,+,MIRb,SINE,MIR,111,188,-80,74833412,74833676 -6 + chr2 74918148 74918459 chr2,74917679,74918502,-,L2a,LINE,L2,-852,2567,1542,74916827,74920043 -1 - chr2 74919605 74919854 chr2,74919605,74919854,-,AluSz6,SINE,Alu,-66,246,1,74919539,74919854 +6 - chr2 74928331 74928397 chr2,74928331,74928397,-,L2b,LINE,L2,0,3375,3310,74928331,74931706 -6 - chr2 74928488 74928989 chr2,74928488,74928989,-,MLT1G1,LTR,ERVL-MaLR,0,579,1,74928488,74928989 -6 - chr2 74929012 74929873 chr2,74929012,74929873,-,L2b,LINE,L2,-340,3079,2105,74928672,74931977 -6 - chr2 74930234 74931536 chr2,74930234,74931700,+,FordPrefect,DNA,hAT-Tip100,162,1683,0,74930073,74931700 +1 + chr2 74932199 74932289 chr2,74931700,74932487,-,L2b,LINE,L2,-1410,2009,1221,74930290,74933707 -3 - chr2 74932661 74933024 chr2,74932489,74933071,+,LTR41,LTR,ERVL,2,768,0,74932488,74933071 +5 + chr2 74938332 74938358 chr2,74938332,74938358,+,(CAA)n,Simple_repeat,Simple_repeat,1,27,0,74938332,74938358 +6 + chr2 74938358 74938383 chr2,74938358,74938383,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,25,0,74938358,74938383 +6 + chr2 74940629 74940685 chr2,74940629,74940685,+,(AC)n,Simple_repeat,Simple_repeat,1,56,0,74940629,74940685 +6 + chr2 74942659 74942670 chr2,74942659,74942775,+,Charlie29a,DNA,hAT-Charlie,4,124,-595,74942656,74943370 +5 + chr2 75154410 75154451 chr2,75154410,75154451,+,(CA)n,Simple_repeat,Simple_repeat,1,41,0,75154410,75154451 +6 + chr2 75154488 75154527 chr2,75154488,75154527,+,(CA)n,Simple_repeat,Simple_repeat,1,39,0,75154488,75154527 +6 + chr2 75156204 75156315 chr2,75156160,75156333,+,MLT1C,LTR,ERVL-MaLR,135,318,-149,75156026,75156482 +3 + chr2 75188584 75189077 chr2,75188584,75189077,+,L3,LINE,CR1,387,948,-3151,75188198,75192228 +6 + chr2 75189657 75189868 chr2,75189657,75189868,+,MamRep1151,LTR?,LTR?,283,477,-232,75189375,75190100 +6 + chr2 75524068 75524151 chr2,75523867,75524215,+,THE1C,LTR,ERVL-MaLR,1,356,-19,75523867,75524234 +1 + chr2 75541925 75542291 chr2,75541925,75542291,+,THE1B,LTR,ERVL-MaLR,1,364,0,75541925,75542291 +6 + chr2 75542430 75542677 chr2,75542430,75542677,+,L2b,LINE,L2,2950,3215,-160,75539481,75542837 +6 + chr2 75660462 75661321 chr2,75658857,75661321,-,L1MB4,LINE,L1,-3840,2907,78,75655017,75661398 -1 - chr2 75661337 75661461 chr2,75661337,75661461,-,AluJr,SINE,Alu,-189,123,1,75661148,75661461 -6 - chr2 75661723 75661795 chr2,75661723,75661795,-,AluJr,SINE,Alu,-213,99,28,75661510,75661822 -6 - chr2 75661806 75662208 chr2,75661806,75662311,-,L1M5,LINE,L1,-1940,4206,3656,75659866,75665966 -5 - chr2 75669989 75670024 chr2,75669738,75670024,-,AluSq2,SINE,Alu,-19,294,1,75669719,75670024 -1 - chr2 75697624 75697996 chr2,75697624,75698046,+,MLT1D,LTR,ERVL-MaLR,2,505,0,75697623,75698046 +5 + chr2 75719120 75719305 chr2,75719011,75719305,-,AluSx,SINE,Alu,-16,296,2,75718995,75719306 -1 - chr2 75719305 75719661 chr2,75719305,75719661,-,L1ME3B,LINE,L1,-493,5749,5383,75718812,75725043 -6 - chr2 75719661 75719761 chr2,75719661,75719761,+,(TA)n,Simple_repeat,Simple_repeat,1,100,0,75719661,75719761 +6 + chr2 75719768 75720018 chr2,75719768,75720094,-,L1ME3B,LINE,L1,-769,5377,5045,75718999,75725138 -5 - chr2 76987418 76987494 chr2,76987418,76987563,+,Charlie7a,DNA,hAT-Charlie,1,141,-131,76987418,76987694 +4 + chr2 77654582 77654668 chr2,77654430,77654724,+,AluSq4,SINE,Alu,5,294,-17,77654426,77654741 -1 + chr2 77917244 77917303 chr2,77917244,77917303,+,(ACAGAA)n,Simple_repeat,Simple_repeat,1,59,0,77917244,77917303 +6 + chr2 78088730 78088791 chr2,78088606,78088804,+,LTR50,LTR,ERVL,1,222,-573,78088606,78089377 +1 + chr2 78107040 78107251 chr2,78106056,78112068,-,HERVL18-int,LTR,ERVL,0,6047,10,78106056,78112077 -3 - chr2 78111900 78112068 chr2,78106056,78112068,-,HERVL18-int,LTR,ERVL,0,6047,10,78106056,78112077 -2 - chr2 78112083 78112130 chr2,78112083,78112413,-,LTR18A,LTR,ERVL,0,357,1,78112083,78112413 -4 - chr2 78127533 78127601 chr2,78127533,78127601,+,MLT1H,LTR,ERVL-MaLR,145,214,-335,78127389,78127936 +6 + chr2 79185371 79185523 chr2,79185371,79185604,+,Charlie18a,DNA,hAT-Charlie,32,276,-66,79185340,79185670 +5 + chr2 79493716 79493880 chr2,79493630,79493880,-,L1PA14,LINE,L1,-4929,1760,1516,79488701,79495395 +5 - chr2 80575230 80575285 chr2,80575230,80575357,-,MER33,DNA,hAT-Charlie,-4,320,182,80575226,80575538 +5 - chr2 80578970 80579169 chr2,80578970,80579169,-,MIRc,SINE,MIR,-32,236,30,80578938,80579198 +6 - chr2 80603586 80603777 chr2,80603586,80603777,+,MIRb,SINE,MIR,24,242,-26,80603563,80603803 -5 + chr2 80605279 80605307 chr2,80605279,80605350,-,Tigger15a,DNA,TcMar-Tigger,-54,661,590,80605225,80605939 +2 - chr2 80699388 80699590 chr2,80699075,80699590,+,ERVL-E-int,LTR,ERVL,3908,4438,-1229,80695168,80700819 -5 + chr2 81986196 81986388 chr2,81984998,81986388,+,LTR12C,LTR,ERV1,3,1579,0,81984996,81986388 -4 + chr2 82005633 82005700 chr2,82005633,82006082,+,LTR7,LTR,ERV1,1,448,-2,82005633,82006084 -1 + chr2 82538577 82538711 chr2,82538361,82538828,-,LTR16A1,LTR,ERVL,0,456,4,82538361,82538831 +1 - chr2 83523396 83523478 chr2,83523396,83523478,+,L1PREC2,LINE,L1,6078,6159,-1,83517319,83523479 +6 + chr2 85064147 85064679 chr2,85064147,85064762,+,L1MB7,LINE,L1,5546,6168,-16,85058602,85064778 -2 + chr2 85064783 85064829 chr2,85064775,85064829,-,MIR,SINE,MIR,-88,180,121,85064687,85064949 +4 - chr2 85064835 85065413 chr2,85064835,85065413,+,LTR75B,LTR,ERVL,4,596,-12,85064832,85065425 -6 + chr2 85066788 85066890 chr2,85066788,85066890,-,MIRb,SINE,MIR,-58,210,100,85066730,85066989 +6 - chr2 85067105 85067244 chr2,85067105,85067244,+,MIR,SINE,MIR,15,143,-119,85067091,85067363 -6 + chr2 85067293 85067347 chr2,85067293,85067796,+,HERV16-int,LTR,ERVL,1422,2010,-2986,85065872,85070782 -1 + chr2 85818308 85818324 chr2,85818210,85818324,+,LTR50,LTR,ERVL,17,146,-649,85818194,85818973 +2 + chr2 85818352 85818394 chr2,85818352,85818394,+,(AGC)n,Simple_repeat,Simple_repeat,1,42,0,85818352,85818394 +6 + chr2 85824391 85825029 chr2,85824391,85825029,-,L1MB7,LINE,L1,-1,6183,5509,85824390,85830537 -6 - chr2 85825029 85825347 chr2,85825029,85825347,-,AluSc,SINE,Alu,0,309,1,85825029,85825347 -6 - chr2 85825347 85825391 chr2,85825347,85826421,-,L1MB7,LINE,L1,-676,5508,4384,85824671,85830804 -5 - chr2 85904441 85904649 chr2,85904441,85904649,+,MIRc,SINE,MIR,20,243,-25,85904422,85904674 +6 + chr2 86195963 86196040 chr2,86195963,86196040,-,MIRb,SINE,MIR,-186,82,8,86195777,86196047 -6 - chr2 86562147 86562164 chr2,86562147,86562164,+,(AAC)n,Simple_repeat,Simple_repeat,1,17,0,86562147,86562164 +6 + chr2 86617322 86617629 chr2,86617322,86617629,+,MER44A,DNA,TcMar-Tigger,1,339,0,86617322,86617629 +5 + chr2 86617906 86618041 chr2,86617906,86618041,+,MamSINE1,SINE,tRNA-RTE,103,246,-44,86617804,86618085 +6 + chr2 86618229 86618449 chr2,86618229,86618449,+,L2a,LINE,L2,3190,3418,-8,86615040,86618457 +6 + chr2 87469950 87470042 chr2,87469754,87470169,+,MLT1C,LTR,ERVL-MaLR,1,467,0,87469754,87470169 +1 + chr2 87470150 87470169 chr2,87469754,87470169,+,MLT1C,LTR,ERVL-MaLR,1,467,0,87469754,87470169 +1 + chr2 87478122 87478230 chr2,87478046,87478424,-,MLT1B,LTR,ERVL-MaLR,0,390,1,87478046,87478424 -3 - chr2 87480480 87480692 chr2,87480480,87480714,-,L3,LINE,CR1,-376,3723,3471,87480104,87484184 -5 - chr2 87583320 87583392 chr2,87583320,87583392,-,MIRc,SINE,MIR,-74,194,122,87583246,87583513 -6 - chr2 87600069 87600164 chr2,87600061,87600164,-,MIR3,SINE,MIR,-68,140,34,87599993,87600197 -2 - chr2 87606600 87606805 chr2,87606600,87606917,+,L1MDa,LINE,L1,18,335,-6298,87606583,87613215 +5 + chr2 88538720 88538824 chr2,88538399,88538824,+,LTR10B1,LTR,ERV1,143,547,0,88538257,88538824 +1 + chr2 88538825 88538982 chr2,88538825,88538982,-,AluSx,SINE,Alu,-153,159,1,88538672,88538982 -6 - chr2 88539041 88539115 chr2,88539041,88539115,+,L2c,LINE,L2,3312,3385,-2,88535730,88539117 +6 + chr2 88574514 88574591 chr2,88574420,88574591,+,Charlie16a,DNA,hAT-Charlie,139,319,-23,88574282,88574614 +2 + chr2 88628198 88628309 chr2,88628198,88628309,-,MIR3,SINE,MIR,-145,123,11,88628053,88628319 -6 - chr2 88628528 88628822 chr2,88628528,88628822,-,AluJr4,SINE,Alu,-19,293,1,88628509,88628822 -6 - chr2 88628867 88629184 chr2,88628867,88629184,+,L2a,LINE,L2,1753,2126,-1293,88627115,88630477 +6 + chr2 88629200 88629403 chr2,88629200,88629403,+,L2a,LINE,L2,2835,3079,-347,88626366,88629750 +6 + chr2 88629403 88629759 chr2,88629403,88629759,-,MLT1B,LTR,ERVL-MaLR,0,390,1,88629403,88629759 -6 - chr2 88629759 88630072 chr2,88629759,88630072,+,L2a,LINE,L2,3080,3413,-13,88626680,88630085 +6 + chr2 88630072 88630097 chr2,88630072,88630097,+,(TGAA)n,Simple_repeat,Simple_repeat,1,25,0,88630072,88630097 +6 + chr2 88630572 88630782 chr2,88630572,88630782,-,L2a,LINE,L2,-1,3386,3183,88630571,88633964 -6 - chr2 88631569 88631821 chr2,88631569,88632387,-,L1ME1,LINE,L1,-8,6171,5334,88631561,88637720 -5 - chr2 95051395 95051669 chr2,95051311,95051669,-,L1ME3A,LINE,L1,-58,6115,5752,95051253,95057420 +5 - chr2 95051735 95051857 chr2,95051735,95051869,+,L3,LINE,CR1,3263,3395,-704,95048473,95052573 -2 + chr2 95525172 95525211 chr2,95525172,95525211,+,A-rich,Low_complexity,Low_complexity,1,41,0,95525172,95525211 -6 + chr2 95525899 95526032 chr2,95525899,95526032,-,MER5A,DNA,hAT-Charlie,-51,138,5,95525848,95526036 +6 - chr2 95668670 95668702 chr2,95668670,95668702,+,(TGAA)n,Simple_repeat,Simple_repeat,1,33,0,95668670,95668702 +6 + chr2 95807195 95807211 chr2,95807195,95807211,-,SVA_E,Retroposon,SVA,-1061,321,198,95806134,95807408 +6 - chr2 95807211 95807302 chr2,95807211,95807320,+,FLAM_C,SINE,Alu,25,133,-10,95807187,95807330 -2 + chr2 95815215 95815282 chr2,95815215,95815282,+,L1PREC2,LINE,L1,3990,4057,-2089,95811226,95817371 -6 + chr2 95815279 95815914 chr2,95815279,95815914,+,L1PREC2,LINE,L1,4165,4790,-1356,95811115,95817270 -6 + chr2 95815914 95816215 chr2,95815914,95816220,-,L1PREC2,LINE,L1,-2145,4001,3673,95813769,95819892 +1 - chr2 96145602 96145622 chr2,96145584,96145622,+,G-rich,Low_complexity,Low_complexity,1,39,0,96145584,96145622 -5 + chr2 96239713 96239799 chr2,96239358,96239799,+,LTR16A,LTR,ERVL,5,451,0,96239354,96239799 +1 + chr2 96241877 96241992 chr2,96241701,96241992,-,AluJr,SINE,Alu,-25,287,1,96241676,96241992 -2 - chr2 96242190 96242333 chr2,96242190,96242333,+,MLT1K,LTR,ERVL-MaLR,14,183,-412,96242177,96242745 +6 + chr2 96242349 96242621 chr2,96242349,96242673,+,MLT1K,LTR,ERVL-MaLR,245,595,0,96242105,96242673 +5 + chr2 96321136 96321284 chr2,96321082,96321284,-,MIRb,SINE,MIR,-32,230,8,96321050,96321291 +4 - chr2 96527940 96528020 chr2,96527818,96528020,+,MamTip1,DNA,hAT-Tip100,35,245,-22,96527784,96528042 -5 + chr2 96529758 96529815 chr2,96529758,96529815,+,(CAGCCCT)n,Simple_repeat,Simple_repeat,1,61,0,96529758,96529815 -6 + chr2 97095023 97095111 chr2,97095023,97095111,-,MER96,DNA,hAT-Tip100,-85,90,1,97094938,97095111 -6 - chr2 97095220 97095365 chr2,97095220,97095365,-,MIRc,SINE,MIR,-97,171,7,97095123,97095371 -6 - chr2 97096049 97096342 chr2,97096049,97096342,+,AluY,SINE,Alu,1,308,-3,97096049,97096345 +6 + chr2 97096433 97096881 chr2,97096433,97096881,+,L1ME1,LINE,L1,5195,5645,-534,97091239,97097415 +6 + chr2 97096881 97097433 chr2,97096881,97097484,+,MER92B,LTR,ERV1,1,636,0,97096881,97097484 +5 + chr2 97281904 97282084 chr2,97281271,97282547,+,L1PREC2,LINE,L1,2371,3674,-2472,97278901,97285019 +1 + chr2 97282492 97282547 chr2,97281271,97282547,+,L1PREC2,LINE,L1,2371,3674,-2472,97278901,97285019 +1 + chr2 97282547 97282599 chr2,97282547,97282599,+,(AC)n,Simple_repeat,Simple_repeat,1,52,0,97282547,97282599 +6 + chr2 97282599 97282906 chr2,97282599,97282906,+,L1PREC2,LINE,L1,3675,4000,-2146,97278925,97285052 +6 + chr2 97282906 97283552 chr2,97282906,97283552,-,L1PREC2,LINE,L1,-1356,4790,4165,97281550,97287716 -6 - chr2 97283549 97283616 chr2,97283549,97283616,-,L1PREC2,LINE,L1,-2089,4057,3990,97281460,97287605 -6 - chr2 97291540 97291630 chr2,97291522,97291630,-,FLAM_C,SINE,Alu,-11,132,25,97291511,97291654 -2 - chr2 97291630 97291646 chr2,97291630,97291646,+,SVA_E,Retroposon,SVA,233,321,-1061,97291398,97292707 +5 + chr2 97301729 97301755 chr2,97300941,97301755,+,L1PA12,LINE,L1,6715,7603,0,97294227,97301755 +1 + chr2 97301813 97302031 chr2,97301813,97302258,-,MLT1J,LTR,ERVL-MaLR,-16,496,39,97301797,97302296 -4 - chr2 97304034 97304151 chr2,97304034,97304198,+,MamGypLTR1c,LTR,Gypsy,326,497,-306,97303709,97304504 +5 + chr2 97416298 97416314 chr2,97416298,97416314,-,SVA_E,Retroposon,SVA,-1061,321,247,97415237,97416560 +6 - chr2 97416314 97416405 chr2,97416314,97416422,+,FLAM_C,SINE,Alu,25,132,-11,97416290,97416433 -2 + chr2 97421078 97421115 chr2,97421078,97421115,-,L2b,LINE,L2,-231,3144,3107,97420847,97424221 -6 - chr2 97424126 97424223 chr2,97424126,97424223,+,L2,LINE,L2,2535,2644,-775,97421592,97424998 -1 + chr2 97424345 97424412 chr2,97424345,97424412,+,L1PREC2,LINE,L1,3990,4057,-2089,97420356,97426501 -6 + chr2 97424409 97425055 chr2,97424409,97425055,+,L1PREC2,LINE,L1,4165,4790,-1356,97420245,97426411 -6 + chr2 97425055 97425362 chr2,97425055,97425362,-,L1PREC2,LINE,L1,-2145,4001,3676,97422910,97429037 +6 - chr2 97425362 97425414 chr2,97425362,97425414,+,(GT)n,Simple_repeat,Simple_repeat,1,52,0,97425362,97425414 -6 + chr2 97425414 97425470 chr2,97425414,97426690,-,L1PREC2,LINE,L1,-2471,3675,2372,97422943,97429061 +1 - chr2 97425878 97426617 chr2,97425414,97426690,-,L1PREC2,LINE,L1,-2471,3675,2372,97422943,97429061 +1 - chr2 97426843 97427127 chr2,97426677,97427938,-,L1PA10,LINE,L1,0,6353,5081,97426677,97433018 +3 - chr2 97429217 97429786 chr2,97429025,97430970,-,L1PA10,LINE,L1,-2962,3369,1402,97426063,97432371 +1 - chr2 97434662 97434847 chr2,97432832,97436609,-,L1PA12,LINE,L1,-3750,4391,566,97429082,97437174 -5 - chr2 97433300 97433527 chr2,97432832,97436609,-,L1PA12,LINE,L1,-3750,4391,566,97429082,97437174 +5 - chr2 97664454 97664472 chr2,97664454,97664565,-,FLAM_A,SINE,Alu,-10,132,12,97664444,97664576 -4 - chr2 97665803 97665940 chr2,97665773,97666075,-,AluJb,SINE,Alu,-8,304,5,97665765,97666079 -1 - chr2 97666904 97666921 chr2,97666864,97666921,-,MER41D,LTR,ERV1,-502,55,1,97666362,97666921 -2 - chr2 97666921 97667054 chr2,97666921,97667076,-,L1ME3A,LINE,L1,-129,6044,5886,97666792,97672961 -1 - chr2 97668047 97668073 chr2,97668047,97668199,-,L1MC4,LINE,L1,-5991,224,69,97662056,97668267 -4 - chr2 97668650 97668953 chr2,97668650,97668953,-,AluSz,SINE,Alu,-9,303,1,97668641,97668953 -6 - chr2 97669045 97669122 chr2,97669045,97669275,-,MER45R,DNA,hAT-Tip100,0,1581,1337,97669045,97670611 -1 - chr2 97669180 97669275 chr2,97669045,97669275,-,MER45R,DNA,hAT-Tip100,0,1581,1337,97669045,97670611 -1 - chr2 97669275 97669398 chr2,97669275,97669398,-,AluSx,SINE,Alu,-187,125,2,97669088,97669399 -6 - chr2 97669398 97669434 chr2,97669398,97669434,-,MER45R,DNA,hAT-Tip100,-252,1329,1294,97669146,97670727 -6 - chr2 97670209 97670503 chr2,97670209,97670503,+,AluJb,SINE,Alu,1,294,-18,97670209,97670521 +6 + chr2 97670505 97670552 chr2,97670505,97670552,-,L1MB7,LINE,L1,-7,6177,6128,97670498,97676679 -6 - chr2 97670552 97670863 chr2,97670552,97670863,-,AluJb,SINE,Alu,0,312,1,97670552,97670863 -6 - chr2 97670863 97670938 chr2,97670863,97670938,-,L1MB7,LINE,L1,-57,6127,6063,97670806,97677000 -6 - chr2 97670938 97671121 chr2,97670938,97671121,-,AluSx,SINE,Alu,-1,311,131,97670937,97671251 -6 - chr2 97671182 97671226 chr2,97671182,97671226,-,AluSx,SINE,Alu,-176,126,83,97671006,97671308 -6 - chr2 97671228 97671446 chr2,97671228,97671446,-,AluJr,SINE,Alu,-97,215,1,97671131,97671446 -1 - chr2 97677419 97677755 chr2,97676941,97677930,+,L1MB4,LINE,L1,292,1374,-6143,97676650,97684073 +5 + chr2 97690992 97691076 chr2,97690769,97691076,-,AluSg7,SINE,Alu,-2,307,1,97690767,97691076 -1 - chr2 97694447 97694559 chr2,97694232,97694559,-,AluY,SINE,Alu,0,311,1,97694232,97694559 -1 - chr2 97694559 97694599 chr2,97694559,97695407,-,L1MB3,LINE,L1,-324,5832,4904,97694235,97700310 -5 - chr2 97697919 97697961 chr2,97697713,97697961,-,AluJo,SINE,Alu,0,312,73,97697713,97698033 -2 - chr2 97698078 97698104 chr2,97698078,97698350,-,L3,LINE,CR1,-106,3993,3696,97697972,97702045 -4 - chr2 97703031 97703064 chr2,97703031,97703072,+,(TCAT)n,Simple_repeat,Simple_repeat,1,41,0,97703031,97703072 +5 + chr2 98331730 98331749 chr2,98331730,98331817,+,MIR,SINE,MIR,158,254,-8,98331573,98331825 -2 + chr2 98333441 98333503 chr2,98333435,98333592,+,MIR,SINE,MIR,66,262,0,98333370,98333592 -3 + chr2 98334268 98334380 chr2,98334268,98334381,+,GA-rich,Low_complexity,Low_complexity,1,114,0,98334268,98334381 -1 + chr2 98355815 98355896 chr2,98355771,98355896,-,MIR1_Amn,SINE,MIR,-77,153,3,98355694,98355898 +4 - chr2 98762043 98762341 chr2,98762043,98762341,-,MER102c,DNA,hAT-Charlie,-2,329,13,98762041,98762353 +6 - chr2 98768902 98769046 chr2,98768829,98769200,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,98768827,98769200 +3 - chr2 98771290 98771440 chr2,98771290,98771440,+,MER5A1,DNA,hAT-Charlie,7,166,0,98771284,98771440 -6 + chr2 98771450 98771501 chr2,98771450,98771501,+,L2b,LINE,L2,3007,3058,-317,98768444,98771818 -6 + chr2 98771526 98771635 chr2,98771526,98771635,+,L1ME4b,LINE,L1,721,833,-59,98770806,98771694 -6 + chr2 99405364 99405456 chr2,99405364,99405456,-,MamRTE1,LINE,RTE-BovB,-3355,457,362,99402009,99405817 -6 - chr2 100104919 100104997 chr2,100104908,100104997,+,(GCCCC)n,Simple_repeat,Simple_repeat,1,90,0,100104908,100104997 +1 + chr2 100105117 100105142 chr2,100105117,100105142,+,(CCGGC)n,Simple_repeat,Simple_repeat,1,49,-19,100105117,100105161 +6 + chr2 100105142 100105175 chr2,100105142,100105175,+,(CGCC)n,Simple_repeat,Simple_repeat,1,34,0,100105142,100105175 +6 + chr2 100106430 100106455 chr2,100106430,100106455,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,100106430,100106455 +6 + chr2 100249064 100249278 chr2,100248817,100249278,-,L1MC1,LINE,L1,-555,5778,5329,100248262,100254606 -5 - chr2 100249552 100249661 chr2,100249552,100249661,+,MER94,DNA,hAT-Blackjack,2,117,-17,100249551,100249678 +6 + chr2 100250051 100250194 chr2,100250051,100250194,+,MIR,SINE,MIR,105,262,0,100249947,100250194 +6 + chr2 100250253 100250490 chr2,100250253,100250490,-,MIR1_Amn,SINE,MIR,-15,253,2,100250238,100250491 -6 - chr2 100250490 100250511 chr2,100250490,100250511,+,(CA)n,Simple_repeat,Simple_repeat,1,21,0,100250490,100250511 +6 + chr2 100250554 100250807 chr2,100250554,100250807,+,MLT1C,LTR,ERVL-MaLR,199,465,-2,100250356,100250809 +6 + chr2 100251143 100251212 chr2,100251143,100251212,+,L1ME3Cz,LINE,L1,72,142,-855,100251072,100252067 +6 + chr2 100251212 100251484 chr2,100251212,100251503,+,AluJb,SINE,Alu,1,301,-11,100251212,100251514 +5 + chr2 100670070 100670102 chr2,100670070,100670102,-,MLT2B1,LTR,ERVL,0,560,529,100670070,100670630 +6 - chr2 100670099 100670171 chr2,100670099,100670444,-,MLT2B1,LTR,ERVL,-144,376,3,100669955,100670446 +2 - chr2 100823553 100823621 chr2,100823523,100823621,-,MER5A1,DNA,hAT-Charlie,-29,137,33,100823494,100823653 -2 - chr2 100823643 100823742 chr2,100823643,100823784,-,L2c,LINE,L2,-4,3383,3252,100823639,100827035 -4 - chr2 100846836 100846889 chr2,100846735,100846889,-,MIR,SINE,MIR,0,262,78,100846735,100846966 -2 - chr2 100994082 100994148 chr2,100994082,100994148,-,MamRTE1,LINE,RTE-BovB,-671,3141,3071,100993411,100997218 +6 - chr2 100994890 100994972 chr2,100994890,100994972,+,AmnSINE1,SINE,5S-Deu-L2,54,142,-433,100994837,100995405 -6 + chr2 101001224 101001330 chr2,101001224,101001330,-,HAL1,LINE,L1,-1111,1396,1291,101000113,101002620 +6 - chr2 101001330 101001650 chr2,101001330,101001650,+,HAL1,LINE,L1,1389,1758,-749,100999942,101002399 -6 + chr2 101152327 101152427 chr2,101152327,101152427,+,CR1_Mam,LINE,CR1,252,348,-1856,101152076,101154283 +6 + chr2 101152653 101152759 chr2,101152653,101152781,-,L2c,LINE,L2,-3,3384,3264,101152650,101156044 -4 - chr2 101154035 101154103 chr2,101154009,101154103,+,LTR33,LTR,ERVL,406,513,-2,101153604,101154105 +2 + chr2 101154534 101155011 chr2,101154534,101155011,+,ERVL-E-int,LTR,ERVL,480,962,-4705,101154055,101159716 +6 + chr2 101155019 101155311 chr2,101155019,101155311,+,AluJr,SINE,Alu,1,290,-22,101155019,101155333 +6 + chr2 101485419 101485472 chr2,101485380,101485472,-,MIR,SINE,MIR,-87,175,79,101485293,101485550 -2 - chr2 102179985 102180001 chr2,102179985,102180026,+,GA-rich,Low_complexity,Low_complexity,1,42,0,102179985,102180026 -2 + chr2 102434151 102434290 chr2,102434151,102435001,-,L3,LINE,CR1,-498,3601,2710,102433653,102437710 -4 - chr2 102434475 102435001 chr2,102434151,102435001,-,L3,LINE,CR1,-498,3601,2710,102433653,102437710 -2 - chr2 102438720 102438795 chr2,102438720,102439056,-,L2b,LINE,L2,0,3375,3014,102438720,102442069 -4 - chr2 102438938 102439056 chr2,102438720,102439056,-,L2b,LINE,L2,0,3375,3014,102438720,102442069 -2 - chr2 102439146 102439298 chr2,102439146,102439465,-,L2b,LINE,L2,-556,2863,2530,102438590,102441994 -4 - chr2 102439593 102440032 chr2,102439574,102440032,-,L2,LINE,L2,-744,2675,2161,102438830,102442192 -2 - chr2 102440218 102440475 chr2,102440218,102440696,-,L2-3_Crp,LINE,L2,-1113,983,501,102439105,102441196 -5 - chr2 102895702 102895722 chr2,102895702,102896873,+,Tigger3b,DNA,TcMar-Tigger,1,1230,-1,102895702,102896874 -1 + chr2 102987554 102987613 chr2,102987554,102987643,+,L2c,LINE,L2,3288,3385,-2,102984267,102987645 +4 + chr2 102988193 102988241 chr2,102988063,102988241,-,MamTip2,DNA,hAT-Tip100,-96,209,29,102987967,102988269 -2 - chr2 103019588 103019633 chr2,103019588,103019633,+,MLT1M,LTR,ERVL-MaLR,121,169,-503,103019468,103020136 +6 + chr2 103109759 103109841 chr2,103109665,103109841,-,L1MB8,LINE,L1,-6538,979,803,103103127,103110643 +5 - chr2 103109919 103110077 chr2,103109919,103110078,-,AluSx,SINE,Alu,-150,162,5,103109769,103110082 +2 - chr2 103856718 103856755 chr2,103856718,103856755,+,(GCT)n,Simple_repeat,Simple_repeat,1,38,0,103856718,103856755 -6 + chr2 103859475 103859643 chr2,103859283,103859719,-,MLT1C,LTR,ERVL-MaLR,0,467,1,103859283,103859719 +3 - chr2 103869195 103869295 chr2,103868765,103869360,+,L2a,LINE,L2,2282,2905,-514,103866484,103869874 -3 + chr2 103869617 103869688 chr2,103869572,103869711,+,L2a,LINE,L2,2906,3051,-368,103866667,103870079 -1 + chr2 104052234 104052265 chr2,104052234,104052265,+,(TCCTTA)n,Simple_repeat,Simple_repeat,1,32,0,104052234,104052265 +6 + chr2 104057998 104058981 chr2,104057193,104058981,+,L1MB4,LINE,L1,8,1962,-4787,104057186,104063768 +5 + chr2 104058981 104059256 chr2,104058981,104059262,+,AluSz,SINE,Alu,2,283,-29,104058980,104059291 +5 + chr2 104077465 104077778 chr2,104077456,104079118,-,MER52A,LTR,ERV1,0,1755,1,104077456,104079118 -5 - chr2 104433436 104433520 chr2,104433436,104433520,+,(TTTTTT)n,Simple_repeat,Simple_repeat,1,84,0,104433436,104433520 +6 + chr2 104506225 104506290 chr2,104506225,104506290,-,MIRb,SINE,MIR,-189,79,13,104506036,104506302 -6 - chr2 104506442 104506764 chr2,104506442,104506764,-,AluSx1,SINE,Alu,0,312,1,104506442,104506764 -6 - chr2 104506834 104506935 chr2,104506834,104506935,-,MIRb,SINE,MIR,-100,168,73,104506734,104507007 -6 - chr2 104507130 104507346 chr2,104507130,104507346,-,MIR,SINE,MIR,-24,238,13,104507106,104507358 -6 - chr2 104510333 104510509 chr2,104510076,104510517,-,Tigger2a,DNA,TcMar-Tigger,-1,433,2,104510075,104510518 +1 - chr2 104512279 104512347 chr2,104512279,104512347,+,GA-rich,Low_complexity,Low_complexity,1,70,0,104512279,104512347 +6 + chr2 104512723 104512757 chr2,104512723,104513103,-,L2b,LINE,L2,-1,3386,2933,104512722,104516035 -5 - chr2 104520351 104520487 chr2,104520351,104520487,-,LFSINE_Vert,SINE,tRNA,-270,189,52,104520081,104520538 -6 - chr2 104581849 104581890 chr2,104581849,104582030,-,MER5A,DNA,hAT-Charlie,0,189,1,104581849,104582030 +1 - chr2 104662858 104662896 chr2,104662858,104663052,+,MIRc,SINE,MIR,61,258,-10,104662798,104663062 +4 + chr2 104664764 104664788 chr2,104664504,104664788,+,MER33,DNA,hAT-Charlie,18,296,-28,104664487,104664816 +2 + chr2 104706701 104706735 chr2,104706701,104706735,+,A-rich,Low_complexity,Low_complexity,1,35,0,104706701,104706735 +6 + chr2 104707462 104707506 chr2,104707462,104707608,+,L2b,LINE,L2,3224,3375,0,104704239,104707608 +5 + chr2 104755196 104755262 chr2,104755196,104755262,+,L2b,LINE,L2,3308,3375,0,104751889,104755262 -6 + chr2 104756234 104756423 chr2,104756234,104756423,-,MIRb,SINE,MIR,-8,260,54,104756226,104756476 +6 - chr2 104756705 104756728 chr2,104756705,104756728,+,(AATG)n,Simple_repeat,Simple_repeat,1,23,0,104756705,104756728 -6 + chr2 104807572 104807654 chr2,104807436,104807654,-,MER58A,DNA,hAT-Charlie,0,224,2,104807436,104807655 +5 - chr2 104812433 104812579 chr2,104812167,104812579,+,L1ME3A,LINE,L1,5772,6159,-14,104806396,104812593 -4 + chr2 104853285 104853302 chr2,104853224,104853302,+,GA-rich,Low_complexity,Low_complexity,1,80,0,104853224,104853302 +1 + chr2 104925955 104926016 chr2,104925876,104926016,-,MLT1A0,LTR,ERVL-MaLR,0,374,234,104925876,104926249 -2 - chr2 104926032 104926052 chr2,104926032,104927101,+,L1PA7,LINE,L1,5070,6139,-15,104920963,104927116 +5 + chr2 105144560 105144604 chr2,105144560,105144604,+,(CCA)n,Simple_repeat,Simple_repeat,1,44,0,105144560,105144604 +6 + chr2 105324210 105324285 chr2,105323934,105324321,+,L1MC4a,LINE,L1,7488,7880,-2,105316447,105324323 +1 + chr2 105327281 105327301 chr2,105327281,105327586,+,AluJr,SINE,Alu,1,301,-11,105327281,105327597 +4 + chr2 105334062 105334190 chr2,105334062,105334190,-,L2b,LINE,L2,0,3375,3248,105334062,105337437 +6 - chr2 105334358 105334482 chr2,105334358,105334482,-,MamGypLTR2b,LTR,Gypsy,-27,895,802,105334331,105335283 +6 - chr2 105334560 105334683 chr2,105334560,105334683,-,MamGypLTR1c,LTR,Gypsy,-152,651,524,105334408,105335206 +6 - chr2 105334802 105334873 chr2,105334802,105334873,+,MER5A,DNA,hAT-Charlie,40,110,-79,105334763,105334952 -6 + chr2 105335172 105335311 chr2,105335172,105335311,-,MIRc,SINE,MIR,-124,144,4,105335048,105335314 +6 - chr2 105335373 105335549 chr2,105335373,105335549,-,MIRb,SINE,MIR,-52,216,13,105335321,105335561 +6 - chr2 105335578 105335774 chr2,105335578,105335774,-,MIRb,SINE,MIR,-8,260,38,105335570,105335811 +6 - chr2 105335984 105336090 chr2,105335984,105336090,+,MIR3,SINE,MIR,82,192,-16,105335903,105336106 -6 + chr2 105336311 105336608 chr2,105336311,105336608,-,AluJr,SINE,Alu,-8,304,5,105336303,105336612 +6 - chr2 105336775 105336981 chr2,105336775,105336981,+,MIR,SINE,MIR,43,265,-3,105336733,105336984 -6 + chr2 105375421 105375619 chr2,105375421,105375619,+,AluSx,SINE,Alu,67,291,-21,105375355,105375640 +6 + chr2 105376141 105376276 chr2,105376141,105376276,-,MIRb,SINE,MIR,-89,179,14,105376052,105376289 -6 - chr2 105376597 105376749 chr2,105376597,105377049,+,L1MB2,LINE,L1,5569,6014,-157,105371029,105377206 +4 + chr2 105846629 105846767 chr2,105846629,105847302,+,L1MB3,LINE,L1,5447,6138,-45,105841183,105847347 -2 + chr2 105847192 105847302 chr2,105846629,105847302,+,L1MB3,LINE,L1,5447,6138,-45,105841183,105847347 -4 + chr2 105853857 105854034 chr2,105853619,105854083,-,MER31B,LTR,ERV1,-2,464,15,105853617,105854097 +3 - chr2 105854503 105854612 chr2,105854357,105854612,-,L1MD3,LINE,L1,-23,7972,7729,105854334,105862340 +5 - chr2 105857027 105857055 chr2,105857027,105857055,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,105857027,105857055 -6 + chr2 105960243 105960309 chr2,105959851,105961136,+,L2a,LINE,L2,1947,3425,-1,105957905,105961137 -1 + chr2 106521903 106522003 chr2,106521834,106522003,-,MER5A,DNA,hAT-Charlie,-2,187,1,106521832,106522003 +5 - chr2 106824940 106825031 chr2,106824940,106825073,+,MER5A,DNA,hAT-Charlie,2,145,-44,106824939,106825117 -1 + chr2 107254691 107254719 chr2,107253359,107254719,+,BLACKJACK,DNA,hAT-Blackjack,967,2287,-682,107252393,107255401 -5 + chr2 107254753 107254881 chr2,107254753,107254903,+,AluJb,SINE,Alu,136,299,-13,107254618,107254916 -2 + chr2 107266153 107266232 chr2,107266081,107266292,-,MER20,DNA,hAT-Charlie,-3,216,20,107266078,107266311 +5 - chr2 107266609 107266708 chr2,107266587,107267329,-,L2a,LINE,L2,-2,3424,2688,107266585,107270016 +3 - chr2 107282039 107282078 chr2,107281984,107282106,+,MIR3,SINE,MIR,18,163,-45,107281967,107282151 -3 + chr2 107282691 107282821 chr2,107282390,107282921,-,L1MCa,LINE,L1,-5952,556,10,107276438,107282930 +3 - chr2 107363250 107363288 chr2,107363250,107363288,+,(ATTT)n,Simple_repeat,Simple_repeat,1,38,0,107363250,107363288 +6 + chr2 107363289 107363416 chr2,107363289,107363580,-,AluSz,SINE,Alu,-27,285,1,107363262,107363580 -4 - chr2 107365480 107365544 chr2,107365441,107365544,+,MIRc,SINE,MIR,30,139,-129,107365412,107365673 -1 + chr2 107381040 107381138 chr2,107381040,107381138,-,MIR,SINE,MIR,-112,150,46,107380928,107381183 -6 - chr2 107400452 107400686 chr2,107400200,107401616,+,L1MEf,LINE,L1,2465,4058,-2261,107397736,107403877 +5 + chr2 107405987 107406136 chr2,107405966,107406136,-,FAM,SINE,Alu,-9,176,6,107405957,107406141 -2 - chr2 107407206 107407252 chr2,107407206,107407252,-,MIRc,SINE,MIR,-13,255,210,107407193,107407461 -6 - chr2 107416695 107416773 chr2,107416693,107416773,+,L2c,LINE,L2,3078,3155,-232,107413616,107417005 -4 + chr2 107528781 107528864 chr2,107527594,107528890,+,L1PA16,LINE,L1,4865,6165,-1,107522730,107528891 -3 + chr2 107529487 107529699 chr2,107529145,107529729,-,LTR9,LTR,ERV1,0,612,1,107529145,107529729 -1 - chr2 107542749 107542809 chr2,107542342,107542809,-,MER70A,LTR,ERVL,-3,469,4,107542339,107542812 -1 - chr2 107542439 107542649 chr2,107542342,107542809,-,MER70A,LTR,ERVL,-3,469,4,107542339,107542812 +1 - chr2 107555133 107555160 chr2,107554925,107555160,-,L1MC3,LINE,L1,-24,7761,7522,107554901,107562681 -2 - chr2 107555160 107555567 chr2,107555160,107555567,+,L1MC3,LINE,L1,7232,7729,-56,107547929,107555623 +6 + chr2 107555729 107555755 chr2,107555729,107555755,+,(TAGA)n,Simple_repeat,Simple_repeat,1,26,0,107555729,107555755 +6 + chr2 107555810 107555971 chr2,107555810,107555971,+,AluSx,SINE,Alu,1,161,-151,107555810,107556122 +6 + chr2 107556083 107556326 chr2,107556083,107556530,+,LTR76,LTR,ERV1,214,673,-2,107555870,107556532 +5 + chr2 107754112 107754192 chr2,107753590,107754192,-,LTR12_,LTR,ERV1,0,688,1,107753590,107754192 -1 - chr2 107755482 107755600 chr2,107755401,107755833,-,MLT1D,LTR,ERVL-MaLR,-1,504,90,107755400,107755922 -3 - chr2 107812078 107812193 chr2,107811954,107812193,-,MIR,SINE,MIR,-9,253,7,107811945,107812199 -2 - chr2 107819862 107819963 chr2,107819852,107819963,+,L2a,LINE,L2,3315,3426,0,107816538,107819963 +2 + chr2 107824561 107824724 chr2,107824340,107824724,+,L2c,LINE,L2,2928,3343,-44,107821413,107824768 -4 + chr2 107826465 107826523 chr2,107826465,107826780,-,AluSx1,SINE,Alu,0,312,2,107826465,107826781 +1 - chr2 107826553 107826780 chr2,107826465,107826780,-,AluSx1,SINE,Alu,0,312,2,107826465,107826781 +1 - chr2 108167752 108167769 chr2,108167752,108168064,-,MER41G,LTR,ERV1,-60,825,515,108167692,108168578 +2 - chr2 108179154 108179251 chr2,108178998,108179251,+,MIR,SINE,MIR,1,262,0,108178998,108179251 -4 + chr2 108179251 108179280 chr2,108179251,108179280,+,(ATG)n,Simple_repeat,Simple_repeat,1,29,0,108179251,108179280 -6 + chr2 108217695 108217841 chr2,108217013,108217943,+,L2a,LINE,L2,2258,3281,-145,108214756,108218088 -1 + chr2 108507515 108507553 chr2,108507514,108507553,+,(T)n,Simple_repeat,Simple_repeat,1,39,0,108507514,108507553 -5 + chr2 108511689 108511738 chr2,108511499,108511738,+,MLT1O,LTR,ERVL-MaLR,22,323,-219,108511478,108511957 -5 + chr2 108511946 108512012 chr2,108511946,108512078,+,MIRb,SINE,MIR,73,225,-43,108511874,108512121 -2 + chr2 108676817 108676930 chr2,108676817,108677752,-,L1MC4,LINE,L1,0,8042,7039,108676817,108684790 +2 - chr2 108677314 108677491 chr2,108676817,108677752,-,L1MC4,LINE,L1,0,8042,7039,108676817,108684790 +3 - chr2 109127327 109127444 chr2,109127327,109127444,-,L2a,LINE,L2,-1,3425,3300,109127326,109130743 +5 - chr2 109127562 109127849 chr2,109127562,109127849,+,AluJr,SINE,Alu,1,284,-28,109127562,109127877 -6 + chr2 109128394 109128513 chr2,109128394,109128513,+,(GCGCCGG)n,Simple_repeat,Simple_repeat,1,123,0,109128394,109128513 -6 + chr2 109594712 109594761 chr2,109594712,109594761,+,(CA)n,Simple_repeat,Simple_repeat,1,49,0,109594712,109594761 -6 + chr2 109594893 109594996 chr2,109594893,109595186,-,AluSz6,SINE,Alu,-18,294,1,109594875,109595186 +2 - chr2 109605393 109605498 chr2,109605239,109605498,+,AluSq2,SINE,Alu,53,311,-2,109605187,109605500 -4 + chr2 109934812 109934894 chr2,109934031,109934897,-,L1MC5,LINE,L1,-430,8874,8003,109933601,109942899 -3 - chr2 109936342 109936411 chr2,109936044,109936411,+,MLT1B,LTR,ERVL-MaLR,3,386,-4,109936042,109936415 +1 + chr2 109936411 109936439 chr2,109936411,109936439,+,MIR,SINE,MIR,161,182,-80,109936251,109936519 +6 + chr2 109936711 109936867 chr2,109936711,109936867,+,AluYc,SINE,Alu,144,299,0,109936568,109936867 +1 + chr2 109936934 109937029 chr2,109936934,109937029,-,L1ME4b,LINE,L1,-116,776,685,109936818,109937713 -6 - chr2 109937875 109938072 chr2,109937875,109939690,+,L1PB2,LINE,L1,1,1863,-5000,109937875,109944690 +4 + chr2 109947364 109947514 chr2,109947334,109947514,-,MIRb,SINE,MIR,-64,204,3,109947270,109947516 -2 - chr2 109968388 109968577 chr2,109968388,109968600,+,L1ME4c,LINE,L1,5268,5484,-639,109963121,109969239 +5 + chr2 109985090 109985112 chr2,109985090,109985112,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,109985090,109985112 +6 + chr2 109987727 109987769 chr2,109987727,109987769,+,(CGTCAT)n,Simple_repeat,Simple_repeat,1,45,0,109987727,109987769 +6 + chr2 109988480 109988802 chr2,109988480,109989376,-,L1MB8,LINE,L1,-1,6177,5266,109988479,109994641 -4 - chr2 109993635 109993679 chr2,109993577,109993679,-,MLT2C1,LTR,ERVL,-291,106,2,109993286,109993680 -2 - chr2 109994915 109995069 chr2,109994915,109995069,+,MIRb,SINE,MIR,21,181,-87,109994895,109995156 +6 + chr2 109995299 109995586 chr2,109995299,109995586,+,MLT1D,LTR,ERVL-MaLR,216,505,0,109995084,109995586 +6 + chr2 110232757 110232839 chr2,110231976,110232842,-,L1MC5,LINE,L1,-430,8874,8003,110231546,110240844 -3 - chr2 110234735 110234812 chr2,110234656,110234812,+,AluYc,SINE,Alu,144,299,0,110234513,110234812 +1 + chr2 110245312 110245355 chr2,110245282,110245355,-,MIRb,SINE,MIR,-64,204,128,110245218,110245482 -2 - chr2 110266349 110266559 chr2,110266349,110266560,+,L1ME4c,LINE,L1,5268,5484,-639,110261082,110267199 +5 + chr2 110375883 110376170 chr2,110375883,110376170,-,MLT1D,LTR,ERVL-MaLR,0,505,216,110375883,110376385 +6 - chr2 110376399 110376553 chr2,110376399,110376553,-,MIRb,SINE,MIR,-87,181,21,110376312,110376573 +6 - chr2 110377789 110377834 chr2,110377789,110377891,+,MLT2C1,LTR,ERVL,2,106,-291,110377788,110378182 -2 + chr2 110382704 110383024 chr2,110382151,110383024,+,L1MB8,LINE,L1,5275,6177,-1,110376877,110383025 -4 + chr2 110402914 110403102 chr2,110402890,110403102,-,L1ME4c,LINE,L1,-638,5485,5269,110402252,110408370 +5 - chr2 110423863 110423907 chr2,110423863,110423907,+,(GCGG)n,Simple_repeat,Simple_repeat,1,46,0,110423863,110423907 -6 + chr2 110424098 110424142 chr2,110424098,110424171,+,MIRb,SINE,MIR,128,204,-64,110423971,110424235 -2 + chr2 110433436 110433632 chr2,110431817,110433632,-,L1PB2,LINE,L1,-5000,1863,1,110426817,110433632 +4 - chr2 110434478 110434573 chr2,110434478,110434573,+,L1ME4b,LINE,L1,685,776,-116,110433794,110434689 -6 + chr2 110434640 110434796 chr2,110434640,110434796,-,AluYc,SINE,Alu,0,299,144,110434640,110434939 +1 - chr2 110435068 110435096 chr2,110435068,110435096,-,MIR,SINE,MIR,-80,182,161,110434988,110435256 +6 - chr2 110435096 110435166 chr2,110435096,110435463,-,MLT1B,LTR,ERVL-MaLR,-4,386,3,110435092,110435465 +1 - chr2 110450355 110450532 chr2,110450063,110451041,+,L1MC4,LINE,L1,6954,8042,0,110443110,110451041 +3 + chr2 110450930 110451041 chr2,110450063,110451041,+,L1MC4,LINE,L1,6954,8042,0,110443110,110451041 +2 + chr2 110610916 110610937 chr2,110610892,110610937,+,(CCGCCCC)n,Simple_repeat,Simple_repeat,1,45,0,110610892,110610937 +1 + chr2 110611029 110611150 chr2,110611029,110611150,+,(CGC)n,Simple_repeat,Simple_repeat,1,125,0,110611029,110611150 +6 + chr2 110612320 110612404 chr2,110612320,110612458,+,MER4CL34,LTR,ERV1,1,137,-628,110612320,110613086 +5 + chr2 110709575 110709666 chr2,110709357,110709666,-,AluSx1,SINE,Alu,-8,304,1,110709349,110709666 +5 - chr2 110709666 110710379 chr2,110709666,110710379,-,L1MB7,LINE,L1,-3561,3083,2326,110706105,110712704 +6 - chr2 110710379 110710673 chr2,110710379,110710673,-,AluSz,SINE,Alu,-11,301,1,110710368,110710673 +6 - chr2 110710673 110710746 chr2,110710673,110710746,-,L1MB7,LINE,L1,-5192,2325,2246,110705481,110712991 +6 - chr2 110711014 110711224 chr2,110711014,110711224,-,MER68,LTR,ERVL,-6,557,335,110711008,110711558 +6 - chr2 110712408 110712941 chr2,110712408,110712941,+,MLT1F,LTR,ERVL-MaLR,3,544,-4,110712406,110712945 -6 + chr2 110713231 110713429 chr2,110713231,110713430,-,MIR,SINE,MIR,0,262,69,110713231,110713498 +2 - chr2 110716306 110716461 chr2,110716306,110716461,+,L1ME4a,LINE,L1,5951,6118,-6,110710356,110716467 -6 + chr2 111098345 111098436 chr2,111098210,111098436,-,MER30,DNA,hAT-Charlie,0,230,1,111098210,111098436 +5 - chr2 111098436 111098774 chr2,111098436,111098774,+,L1MC3,LINE,L1,7420,7785,0,111091017,111098774 -6 + chr2 111098906 111099052 chr2,111098906,111099052,-,MIRc,SINE,MIR,-61,207,54,111098845,111099105 +6 - chr2 111099292 111099498 chr2,111099292,111099498,-,MIRc,SINE,MIR,-4,264,26,111099288,111099523 +6 - chr2 111114139 111114298 chr2,111114100,111114464,-,MLT1H,LTR,ERVL-MaLR,-100,449,95,111114000,111114558 +1 - chr2 111115520 111115547 chr2,111115401,111115547,+,OldhAT1,DNA,hAT-Ac,1065,1219,-1629,111114337,111117176 -4 + chr2 111196731 111196848 chr2,111196731,111196848,-,MER5B,DNA,hAT-Charlie,0,178,57,111196731,111196904 +6 - chr2 111206424 111206494 chr2,111206424,111206867,-,L1ME3,LINE,L1,-861,5285,4834,111205563,111211700 -5 - chr2 111207776 111208045 chr2,111207417,111208045,+,L2,LINE,L2,2072,2760,-659,111205346,111208704 -5 + chr2 111208438 111208552 chr2,111208438,111208552,+,MIR,SINE,MIR,6,122,-140,111208433,111208692 -6 + chr2 111210995 111211236 chr2,111209518,111211236,-,L1ME1,LINE,L1,0,6570,4806,111209518,111216041 +5 - chr2 111211236 111211537 chr2,111211236,111211537,-,AluSz6,SINE,Alu,-13,299,1,111211223,111211537 +6 - chr2 111211537 111211654 chr2,111211537,111211654,-,L1ME1,LINE,L1,-1732,4805,4681,111209805,111216334 +6 - chr2 111211654 111212018 chr2,111211654,111212018,+,THE1B,LTR,ERVL-MaLR,1,364,0,111211654,111212018 -6 + chr2 111212018 111212476 chr2,111212018,111214703,-,L1ME1,LINE,L1,-1857,4680,1931,111210161,111216633 +1 - chr2 111237004 111237024 chr2,111236973,111237024,+,(ATTTT)n,Simple_repeat,Simple_repeat,1,53,0,111236973,111237024 -5 + chr2 111237025 111237311 chr2,111237025,111237311,-,AluSx3,SINE,Alu,-27,284,1,111236998,111237311 +6 - chr2 111237313 111237613 chr2,111237313,111237613,-,AluSx,SINE,Alu,-9,303,1,111237304,111237613 +6 - chr2 111237613 111237705 chr2,111237613,111237705,+,Kanga2_a,DNA,TcMar-Tc2,685,786,-102,111236929,111237807 -6 + chr2 111238118 111238152 chr2,111238118,111238152,+,(GAGTGT)n,Simple_repeat,Simple_repeat,1,36,0,111238118,111238152 -6 + chr2 111239874 111239990 chr2,111239874,111239990,+,MIRb,SINE,MIR,13,150,-118,111239862,111240108 -6 + chr2 111247430 111247492 chr2,111247385,111247492,+,MIRc,SINE,MIR,14,137,-131,111247372,111247623 -4 + chr2 111279445 111279627 chr2,111279267,111279627,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,111279267,111279627 +2 + chr2 111321623 111321760 chr2,111321623,111321760,-,HAL1ME,LINE,L1,-1393,1072,927,111320230,111322686 +6 - chr2 111322633 111322743 chr2,111322633,111322743,+,(CCTTCCT)n,Simple_repeat,Simple_repeat,1,113,0,111322633,111322743 -6 + chr2 111323290 111323419 chr2,111323290,111323419,+,L4_C_Mam,LINE,RTE-X,4792,4919,-219,111318499,111323638 -6 + chr2 111324389 111324687 chr2,111324389,111324687,+,AluSx,SINE,Alu,1,298,-14,111324389,111324701 -6 + chr2 111344061 111344229 chr2,111343912,111344229,-,L1MDa,LINE,L1,-6298,335,18,111337614,111344246 +5 - chr2 111350665 111350761 chr2,111350665,111350768,+,MIR3,SINE,MIR,34,140,-68,111350632,111350836 -2 + chr2 111365561 111365618 chr2,111365088,111365618,+,L1MDa,LINE,L1,5383,5936,-634,111359706,111366252 -4 + chr2 111367487 111367512 chr2,111367440,111367512,+,MIRc,SINE,MIR,122,194,-74,111367319,111367586 -4 + chr2 111430802 111430908 chr2,111430802,111430924,-,MER103C,DNA,hAT-Charlie,-80,217,86,111430722,111431009 +1 - chr2 111469603 111469723 chr2,111469495,111469723,+,L3,LINE,CR1,3471,3719,-380,111466025,111470103 -5 + chr2 111471989 111472097 chr2,111471794,111472172,+,MLT1B,LTR,ERVL-MaLR,1,390,0,111471794,111472172 -3 + chr2 111480041 111480061 chr2,111480041,111480456,-,MLT1C,LTR,ERVL-MaLR,0,467,1,111480041,111480456 +1 - chr2 111480169 111480261 chr2,111480041,111480456,-,MLT1C,LTR,ERVL-MaLR,0,467,1,111480041,111480456 +1 - chr2 111491273 111491389 chr2,111491234,111491389,+,Tigger14a,DNA,TcMar-Tigger,106,266,-58,111491129,111491447 +1 + chr2 111492084 111492190 chr2,111492084,111492190,-,MIR,SINE,MIR,-60,202,94,111492024,111492283 +6 - chr2 111510624 111510684 chr2,111510211,111510684,+,MLT1J-int,LTR,ERVL-MaLR,751,1267,-120,111509461,111510804 +2 + chr2 111510721 111510863 chr2,111510721,111510863,+,MLT1J,LTR,ERVL-MaLR,4,142,-370,111510718,111511233 +6 + chr2 111510853 111510990 chr2,111510853,111511052,+,MLT1J,LTR,ERVL-MaLR,306,512,0,111510548,111511052 +5 + chr2 111607979 111608015 chr2,111607979,111608096,+,MLT1J,LTR,ERVL-MaLR,387,507,-5,111607593,111608101 +4 + chr2 111612387 111612518 chr2,111612387,111612571,+,LTR37A,LTR,ERV1,222,405,-21,111612166,111612592 +5 + chr2 112189641 112190635 chr2,112189641,112190995,-,L1MC5,LINE,L1,-10,9294,7876,112189631,112198870 -5 - chr2 112590796 112590817 chr2,112590454,112590817,-,LTR16C,LTR,ERVL,-3,535,150,112590451,112590966 -1 - chr2 112590854 112590880 chr2,112590854,112590898,-,LTR16C,LTR,ERVL,-449,46,4,112590405,112590901 -4 - chr2 112591496 112591760 chr2,112591336,112591760,-,LTR3A,LTR,ERVK,-40,444,1,112591296,112591760 -2 - chr2 112614213 112614431 chr2,112612994,112615352,-,L1PA7,LINE,L1,-4021,2478,10,112608973,112615361 -5 - chr2 112642156 112642189 chr2,112642156,112642318,+,MIRb,SINE,MIR,105,268,0,112642052,112642318 -2 + chr2 112644249 112644289 chr2,112644249,112644289,+,(AAAC)n,Simple_repeat,Simple_repeat,1,40,0,112644249,112644289 -6 + chr2 112645007 112645171 chr2,112645007,112645171,-,MIR,SINE,MIR,-37,225,43,112644970,112645213 +6 - chr2 112840816 112840933 chr2,112840816,112840933,-,MER58A,DNA,hAT-Charlie,-3,221,78,112840813,112841010 -6 - chr2 112841013 112841229 chr2,112841013,112841229,-,MIRb,SINE,MIR,0,268,35,112841013,112841263 -6 - chr2 112841773 112841935 chr2,112841773,112841935,-,L3,LINE,CR1,-2175,1924,1730,112839598,112843664 -6 - chr2 112842528 112843038 chr2,112842528,112843038,+,L2c,LINE,L2,2644,3195,-192,112839885,112843230 +6 + chr2 112843800 112843836 chr2,112843800,112843836,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,112843800,112843836 +6 + chr2 112844147 112844195 chr2,112844147,112844314,+,AluJo,SINE,Alu,72,232,-80,112844076,112844394 +5 + chr2 113171535 113171826 chr2,113171418,113171826,-,LTR47A,LTR,ERVL,0,452,1,113171418,113171826 +5 - chr2 113171826 113171893 chr2,113171826,113171893,+,L2a,LINE,L2,3333,3399,-27,113168494,113171920 -6 + chr2 113175335 113175360 chr2,113175335,113175362,+,(CT)n,Simple_repeat,Simple_repeat,1,28,0,113175335,113175362 -1 + chr2 113237927 113238013 chr2,113237927,113238013,-,MER135,DNA,DNA,-49,179,94,113237878,113238106 -6 - chr2 113238066 113238369 chr2,113238066,113238369,-,AluSx3,SINE,Alu,-11,300,1,113238055,113238369 -6 - chr2 113238660 113238873 chr2,113238660,113238873,+,MIRb,SINE,MIR,60,268,0,113238601,113238873 +6 + chr2 113239070 113239367 chr2,113239070,113239367,-,AluSx,SINE,Alu,-15,297,1,113239055,113239367 -6 - chr2 113239667 113239707 chr2,113239667,113239707,+,MIR3,SINE,MIR,114,154,-54,113239554,113239761 +5 + chr2 113239714 113239835 chr2,113239714,113239835,-,Charlie15a,DNA,hAT-Charlie,-1,223,91,113239713,113239925 -6 - chr2 113239888 113239958 chr2,113239888,113239958,+,MIR3,SINE,MIR,139,208,0,113239750,113239958 +5 + chr2 113240741 113241101 chr2,113240741,113241195,-,L2b,LINE,L2,-1,3374,2925,113240740,113244119 -5 - chr2 113250766 113250879 chr2,113250716,113250879,-,L2a,LINE,L2,-1,3425,3233,113250715,113254111 -1 - chr2 113259537 113259584 chr2,113259537,113259653,+,MER5B,DNA,hAT-Charlie,19,147,-31,113259519,113259684 +5 + chr2 113265679 113265810 chr2,113265679,113265810,+,L2a,LINE,L2,3288,3426,0,113262392,113265810 +6 + chr2 113266616 113266694 chr2,113266616,113266694,-,Charlie22a,DNA,hAT-Charlie,0,491,414,113266616,113267107 -6 - chr2 113267854 113267919 chr2,113267854,113267919,+,(TG)n,Simple_repeat,Simple_repeat,1,66,0,113267854,113267919 +6 + chr2 113267933 113268081 chr2,113267933,113268081,-,MER96,DNA,hAT-Tip100,-8,167,8,113267925,113268088 -6 - chr2 113268087 113268174 chr2,113268087,113268174,+,(TGTG)n,Simple_repeat,Simple_repeat,1,88,0,113268087,113268174 +6 + chr2 113268362 113268483 chr2,113268362,113268483,+,MIR3,SINE,MIR,58,187,-21,113268305,113268504 +6 + chr2 113269685 113269712 chr2,113269685,113269712,+,GA-rich,Low_complexity,Low_complexity,1,27,0,113269685,113269712 +6 + chr2 113270053 113270120 chr2,113270053,113270120,-,MIR,SINE,MIR,-51,211,141,113270002,113270260 -6 - chr2 113270354 113270464 chr2,113270354,113270464,-,MIRb,SINE,MIR,-114,154,47,113270240,113270510 -6 - chr2 113271450 113271535 chr2,113271450,113271535,-,MIRc,SINE,MIR,-61,207,123,113271389,113271657 -6 - chr2 113271782 113271898 chr2,113271782,113271898,+,MIRb,SINE,MIR,111,221,-47,113271672,113271945 +6 + chr2 113271928 113272001 chr2,113271928,113272001,-,MIRb,SINE,MIR,0,268,195,113271928,113272195 -6 - chr2 113274021 113274047 chr2,113274021,113274047,+,(GT)n,Simple_repeat,Simple_repeat,1,26,0,113274021,113274047 +6 + chr2 113432601 113432711 chr2,113432601,113432711,+,MER58B,DNA,hAT-Charlie,32,149,-192,113432570,113432903 +6 + chr2 113432713 113433024 chr2,113432713,113433024,-,MER57B2,LTR,ERV1,0,403,1,113432713,113433024 -6 - chr2 113433025 113433153 chr2,113433025,113433153,-,MER57-int,LTR,ERV1,-2,7535,7425,113433023,113440577 -6 - chr2 113433153 113433245 chr2,113433153,113433245,-,LTR54B,LTR,ERV1,-121,377,280,113433032,113433524 -6 - chr2 113433245 113433510 chr2,113433245,113433510,-,AluSx,SINE,Alu,-45,267,2,113433200,113433511 -6 - chr2 113433510 113433781 chr2,113433510,113433781,-,LTR54B,LTR,ERV1,-219,279,1,113433291,113433781 -6 - chr2 113433802 113433924 chr2,113433802,113433924,+,MER58D,DNA,hAT-Charlie,260,382,-4,113433543,113433928 +6 + chr2 113433934 113434150 chr2,113433934,113434150,+,MIRb,SINE,MIR,25,248,-20,113433910,113434170 +6 + chr2 113434160 113434177 chr2,113434160,113434177,+,(TTG)n,Simple_repeat,Simple_repeat,1,17,0,113434160,113434177 +6 + chr2 113434344 113434363 chr2,113434344,113434363,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,113434344,113434363 +6 + chr2 113434363 113434669 chr2,113434363,113434669,+,AluSg,SINE,Alu,2,308,-2,113434362,113434671 +6 + chr2 113434928 113435383 chr2,113434928,113435383,-,L1MB8,LINE,L1,-5,6173,5715,113434923,113441097 -6 - chr2 113435498 113435707 chr2,113435498,113435707,+,AluJr,SINE,Alu,82,286,-26,113435417,113435733 +6 + chr2 113512463 113512534 chr2,113512233,113512534,-,AluSc8,SINE,Alu,0,311,1,113512233,113512534 -1 - chr2 113512534 113512594 chr2,113512534,113512984,-,L1MEc,LINE,L1,-5942,458,38,113506592,113513021 -4 - chr2 113514984 113515343 chr2,113514909,113515343,-,MLT1C,LTR,ERVL-MaLR,-9,458,8,113514900,113515350 -2 - chr2 113535880 113535999 chr2,113535880,113536016,+,FLAM_C,SINE,Alu,1,132,-11,113535880,113536027 -2 + chr2 113540052 113540226 chr2,113539931,113540226,-,L1MA7,LINE,L1,-8,6283,5989,113539923,113546214 +5 - chr2 113577982 113578096 chr2,113577963,113578096,-,AluJr,SINE,Alu,-179,133,1,113577784,113578096 -2 - chr2 113578096 113578246 chr2,113578096,113578246,+,MIRb,SINE,MIR,91,255,-13,113578006,113578259 +6 + chr2 113578541 113578852 chr2,113578541,113578898,+,MLT1J2,LTR,ERVL-MaLR,41,448,0,113578501,113578898 +5 + chr2 113605867 113606233 chr2,113605622,113606233,+,L1MC,LINE,L1,4898,5546,-2239,113600725,113608472 -5 + chr2 113606244 113606794 chr2,113606244,113606794,+,MER34C_,LTR,ERV1,7,583,-2,113606238,113606796 -6 + chr2 113606799 113606987 chr2,113606799,113606987,+,L1MC,LINE,L1,5577,5765,-2020,113601223,113609007 -6 + chr2 113607196 113607836 chr2,113607196,113607836,+,MER72,LTR,ERV1,1,668,-54,113607196,113607890 -6 + chr2 113607836 113607908 chr2,113607836,113608135,+,AluSq2,SINE,Alu,3,301,-12,113607834,113608147 -1 + chr2 113672708 113672738 chr2,113672708,113672910,-,LTR88a,LTR,Gypsy?,0,816,617,113672708,113673526 -4 - chr2 113672869 113672910 chr2,113672708,113672910,-,LTR88a,LTR,Gypsy?,0,816,617,113672708,113673526 -2 - chr2 113673128 113673191 chr2,113673128,113673525,+,MER34A,LTR,ERV1,190,570,-1,113672939,113673526 +5 + chr2 113677702 113677738 chr2,113677579,113677738,-,MIR3,SINE,MIR,-41,167,4,113677538,113677741 +5 - chr2 113688161 113688257 chr2,113688004,113688283,+,AluSx,SINE,Alu,1,281,-31,113688004,113688314 -3 + chr2 113703868 113704078 chr2,113703868,113704969,-,LTR12E,LTR,ERV1,0,1322,1,113703868,113704969 +1 - chr2 113830852 113830918 chr2,113830816,113830918,-,MIRb,SINE,MIR,-130,138,35,113830686,113830952 +4 - chr2 113888267 113888732 chr2,113888267,113888732,+,L2b,LINE,L2,2869,3375,0,113885399,113888732 -6 + chr2 113888917 113889050 chr2,113888917,113889050,+,MER5A,DNA,hAT-Charlie,48,182,-7,113888870,113889057 -6 + chr2 113889081 113889216 chr2,113889081,113889216,-,AluJr,SINE,Alu,-187,125,1,113888894,113889216 +6 - chr2 113904086 113904159 chr2,113903861,113904159,-,AluY,SINE,Alu,-17,294,1,113903844,113904159 -1 - chr2 113904159 113904306 chr2,113904159,113904306,-,L1MEf,LINE,L1,-5108,1092,951,113899051,113905256 -6 - chr2 113904333 113904467 chr2,113904333,113904467,-,L1MEf,LINE,L1,-5424,776,643,113898909,113905109 -6 - chr2 113904461 113904883 chr2,113904461,113904883,-,L1M5,LINE,L1,-384,5794,5312,113904077,113910194 -6 - chr2 113904884 113904909 chr2,113904884,113904909,+,(TTCC)n,Simple_repeat,Simple_repeat,1,25,0,113904884,113904909 +6 + chr2 113905229 113905258 chr2,113905229,113905479,+,AluSg,SINE,Alu,46,295,-15,113905184,113905494 +5 + chr2 113982759 113983225 chr2,113982759,113983225,+,MLT1H1,LTR,ERVL-MaLR,1,514,-41,113982759,113983266 +6 + chr2 114007119 114007295 chr2,114007119,114007295,+,MIR,SINE,MIR,11,202,-60,114007109,114007355 +6 + chr2 114828454 114828507 chr2,114828454,114828507,-,L2c,LINE,L2,-16,3371,3319,114828438,114831825 +6 - chr2 114828560 114828619 chr2,114828560,114828619,+,L2a,LINE,L2,3368,3426,0,114825193,114828619 -6 + chr2 114833997 114834033 chr2,114833997,114834033,+,(TGTACA)n,Simple_repeat,Simple_repeat,1,36,0,114833997,114834033 -6 + chr2 115131827 115131924 chr2,115131806,115132091,+,AluSx1,SINE,Alu,1,286,-26,115131806,115132117 -3 + chr2 115144859 115145008 chr2,115144845,115145008,-,L1MEa,LINE,L1,-5876,194,26,115138969,115145033 +4 - chr2 117757563 117757774 chr2,117757325,117758099,+,L4_A_Mam,LINE,RTE-X,4090,4859,-131,117753236,117758230 -5 + chr2 117760569 117760591 chr2,117760569,117760735,+,MER5B,DNA,hAT-Charlie,15,178,0,117760555,117760735 -2 + chr2 117785530 117785647 chr2,117785370,117785675,+,AluJr,SINE,Alu,1,303,-9,117785370,117785684 -3 + chr2 117804132 117804174 chr2,117803780,117809809,+,L1PA3,LINE,L1,145,6155,0,117803636,117809809 -1 + chr2 117833937 117834024 chr2,117833921,117834024,-,MER5A,DNA,hAT-Charlie,-67,122,5,117833854,117834028 -1 - chr2 117834490 117834549 chr2,117834490,117834646,-,AluSx,SINE,Alu,-23,289,134,117834467,117834779 -4 - chr2 117837659 117837870 chr2,117837659,117837870,+,MER20,DNA,hAT-Charlie,1,218,-1,117837659,117837871 +1 + chr2 117837870 117837968 chr2,117837870,117837968,+,L2c,LINE,L2,3287,3378,-9,117834584,117837977 +6 + chr2 117838107 117838204 chr2,117838107,117838508,-,L2b,LINE,L2,0,3375,2929,117838107,117841436 -5 - chr2 117839182 117839298 chr2,117838987,117839298,+,AluSz6,SINE,Alu,1,312,0,117838987,117839298 +2 + chr2 117839417 117839843 chr2,117839417,117839843,+,MLT1J,LTR,ERVL-MaLR,44,479,-33,117839374,117839876 +6 + chr2 117840425 117840671 chr2,117840425,117840671,+,Tigger4a,DNA,TcMar-Tigger,1,236,0,117840425,117840671 +6 + chr2 117840870 117841165 chr2,117840870,117841165,+,MLT1D,LTR,ERVL-MaLR,1,281,-224,117840870,117841389 +6 + chr2 117841169 117841228 chr2,117841169,117841228,+,MLT1D,LTR,ERVL-MaLR,445,503,-2,117840725,117841230 +6 + chr2 117995767 117995790 chr2,117995767,117995943,+,MIR,SINE,MIR,70,262,0,117995698,117995943 +4 + chr2 117996593 117996730 chr2,117996593,117996730,+,MIRb,SINE,MIR,107,242,-26,117996487,117996756 +1 + chr2 117996951 117997083 chr2,117996951,117997083,-,MIR,SINE,MIR,-66,202,47,117996885,117997129 -1 - chr2 117999017 117999224 chr2,117999017,117999224,-,MIR,SINE,MIR,-10,252,8,117999007,117999231 -6 - chr2 117999299 117999419 chr2,117999299,117999419,+,MIRb,SINE,MIR,14,145,-123,117999286,117999542 +6 + chr2 118000083 118000248 chr2,118000083,118000541,-,L2c,LINE,L2,-40,3347,2914,118000043,118003454 -5 - chr2 118015012 118015283 chr2,118015012,118015283,+,AluJb,SINE,Alu,4,286,-26,118015009,118015309 +6 + chr2 118015284 118015371 chr2,118015284,118015371,+,(TA)n,Simple_repeat,Simple_repeat,1,87,0,118015284,118015371 +6 + chr2 118015366 118015396 chr2,118015366,118015396,+,(TATTT)n,Simple_repeat,Simple_repeat,1,31,0,118015366,118015396 +6 + chr2 118132128 118132216 chr2,118132035,118132216,+,MIRb,SINE,MIR,50,259,-9,118131986,118132225 -5 + chr2 118132329 118132372 chr2,118132329,118132631,+,MER2,DNA,TcMar-Tigger,1,345,0,118132329,118132631 -2 + chr2 118176765 118176905 chr2,118176759,118176937,-,MIRb,SINE,MIR,-27,241,56,118176732,118176992 +3 - chr2 118949306 118949630 chr2,118948826,118949630,-,HERVIP10B3-int,LTR,ERV1,-763,6840,6048,118948063,118955677 +5 - chr2 118949645 118949922 chr2,118949645,118952837,-,HERVIP10FH-int,LTR,ERV1,-2005,3097,2,118947640,118952838 +2 - chr2 118952590 118952837 chr2,118949645,118952837,-,HERVIP10FH-int,LTR,ERV1,-2005,3097,2,118947640,118952838 +4 - chr2 118952839 118952983 chr2,118952839,118953399,-,LTR10E,LTR,ERV1,0,633,1,118952839,118953399 +1 - chr2 119244422 119244537 chr2,119244261,119244537,-,AluJr,SINE,Alu,-28,284,2,119244233,119244538 +5 - chr2 119244537 119244728 chr2,119244537,119244728,-,Charlie4a,DNA,hAT-Charlie,-247,261,46,119244290,119244773 +6 - chr2 119244879 119244983 chr2,119244879,119244983,-,L2c,LINE,L2,0,3387,3288,119244879,119248270 +6 - chr2 119245113 119245259 chr2,119245113,119245259,+,L1ME4c,LINE,L1,284,430,-400,119244830,119245659 -6 + chr2 119245283 119245390 chr2,119245283,119245390,+,L2c,LINE,L2,3273,3384,-3,119242011,119245393 -6 + chr2 119246110 119246232 chr2,119246110,119246232,-,MIRb,SINE,MIR,-118,150,20,119245992,119246251 +6 - chr2 119246835 119246881 chr2,119246835,119246908,-,L2c,LINE,L2,-291,3096,3021,119246544,119249928 +2 - chr2 119248382 119249071 chr2,119248382,119249130,-,L2a,LINE,L2,-73,3353,2486,119248309,119251615 +1 - chr2 119476448 119476640 chr2,119476396,119476640,+,MamGypLTR3,LTR,Gypsy,597,874,-20,119475800,119476660 +1 + chr2 119486150 119486311 chr2,119486150,119486311,+,L3,LINE,CR1,3910,4083,-16,119482241,119486327 +6 + chr2 119486634 119486781 chr2,119486634,119486781,+,MIR,SINE,MIR,32,216,-46,119486603,119486827 +6 + chr2 119486979 119487331 chr2,119486979,119487331,+,L1MB5,LINE,L1,5823,6174,0,119481157,119487331 +6 + chr2 120325523 120325620 chr2,120325465,120325777,-,AluSx,SINE,Alu,0,312,1,120325465,120325777 -3 - chr2 120464335 120464493 chr2,120464306,120464493,-,MIR,SINE,MIR,-7,255,60,120464299,120464552 +5 - chr2 120465140 120465270 chr2,120465140,120465270,-,MIRb,SINE,MIR,-149,119,3,120464991,120465272 +6 - chr2 120465419 120465550 chr2,120465419,120465550,-,MIR3,SINE,MIR,-29,179,33,120465390,120465582 +6 - chr2 120465811 120465863 chr2,120465811,120465863,+,MIR3,SINE,MIR,126,181,-27,120465686,120465890 -6 + chr2 120543211 120543246 chr2,120543211,120543246,-,L2b,LINE,L2,-8,3367,3333,120543203,120546578 +6 - chr2 120544217 120544326 chr2,120543487,120544523,-,MER45B,DNA,hAT-Tip100,0,1040,1,120543487,120544523 +1 - chr2 120553743 120553781 chr2,120553623,120553781,-,L2c,LINE,L2,0,3387,3243,120553623,120557023 +5 - chr2 120553781 120554069 chr2,120553781,120554090,+,AluJo,SINE,Alu,1,302,-10,120553781,120554100 -2 + chr2 120554563 120554597 chr2,120554563,120554875,-,L2b,LINE,L2,-86,3289,2968,120554477,120557842 +2 - chr2 120558035 120558109 chr2,120557693,120558317,+,L2c,LINE,L2,2683,3341,-46,120555011,120558363 -1 + chr2 120686709 120686756 chr2,120686709,120686878,-,L1ME4a,LINE,L1,-239,5885,5713,120686470,120692590 +2 - chr2 120709263 120709470 chr2,120709219,120709470,-,AluSx,SINE,Alu,-10,302,1,120709209,120709470 +5 - chr2 120867110 120867155 chr2,120867022,120867155,+,MIR3,SINE,MIR,46,183,-25,120866977,120867180 -4 + chr2 120867362 120867399 chr2,120867362,120867399,+,(CCAG)n,Simple_repeat,Simple_repeat,1,37,0,120867362,120867399 -6 + chr2 121081950 121082042 chr2,121081950,121082062,-,L2b,LINE,L2,-21,3354,3240,121081929,121085301 +2 - chr2 121178327 121178387 chr2,121178272,121178508,+,L1M8,LINE,L1,7,262,-2093,121178266,121180601 +1 + chr2 121182223 121182323 chr2,121182223,121182323,+,FLAM_C,SINE,Alu,23,124,-178,121182201,121182501 +6 + chr2 121530605 121530638 chr2,121530605,121530638,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,33,0,121530605,121530638 +6 + chr2 121532378 121532705 chr2,121532349,121532848,+,L1MC3,LINE,L1,7147,7683,-102,121525203,121532950 +5 + chr2 121650281 121650381 chr2,121650281,121650581,-,AluJb,SINE,Alu,-18,294,1,121650263,121650581 -4 - chr2 121650468 121650581 chr2,121650281,121650581,-,AluJb,SINE,Alu,-18,294,1,121650263,121650581 -2 - chr2 121651024 121651074 chr2,121651024,121651074,-,L2c,LINE,L2,-309,3078,3029,121650715,121654102 -6 - chr2 121651187 121651538 chr2,121651187,121651622,-,L1MB2,LINE,L1,-23,6148,5667,121651164,121657288 -5 - chr2 121688203 121688351 chr2,121688052,121688351,+,AluSx1,SINE,Alu,1,304,-8,121688052,121688359 +1 + chr2 121688351 121688449 chr2,121688351,121688449,-,ERV24_Prim-int,LTR,ERV1,-4854,2721,2623,121683497,121691071 -6 - chr2 121688449 121688767 chr2,121688449,121688767,+,AluSx,SINE,Alu,1,311,-1,121688449,121688768 +6 + chr2 121688836 121689017 chr2,121688836,121689017,+,L2a,LINE,L2,3111,3317,-109,121685726,121689126 +6 + chr2 121689017 121689310 chr2,121689017,121689310,+,AluSz,SINE,Alu,4,294,-18,121689014,121689328 +6 + chr2 121689310 121689406 chr2,121689310,121689406,+,L2a,LINE,L2,3318,3425,-1,121685993,121689407 +6 + chr2 121689533 121689714 chr2,121689533,121689903,-,L2c,LINE,L2,0,3387,3001,121689533,121692903 -5 - chr2 121727826 121727848 chr2,121727826,121727848,+,(TCA)n,Simple_repeat,Simple_repeat,1,22,0,121727826,121727848 +6 + chr2 121796490 121796702 chr2,121796490,121796854,-,MLT1B,LTR,ERVL-MaLR,-12,378,4,121796478,121796857 -5 - chr2 123065341 123065469 chr2,123065341,123065574,+,MLT1C,LTR,ERVL-MaLR,204,467,0,123065138,123065574 +4 + chr2 123067167 123067337 chr2,123067167,123067337,-,MER5A,DNA,hAT-Charlie,-7,182,1,123067160,123067337 -6 - chr2 123073185 123073481 chr2,123073185,123075294,-,L1M4b,LINE,L1,-4745,2122,11,123068440,123075304 +1 - chr2 123443266 123443300 chr2,123443229,123443300,+,L2a,LINE,L2,3355,3426,0,123439875,123443300 -5 + chr2 123443340 123443403 chr2,123443340,123443403,+,MIR,SINE,MIR,96,158,-104,123443245,123443507 -6 + chr2 123443403 123443480 chr2,123443403,123443939,-,MER41E,LTR,ERV1,0,595,1,123443403,123443939 +2 - chr2 125710969 125711055 chr2,125710589,125711055,+,LTR7C,LTR,ERV1,1,471,0,125710589,125711055 +1 + chr2 126110099 126110310 chr2,126109649,126110745,-,L1MC4,LINE,L1,-184,7858,6649,126109465,126117393 +5 - chr2 126112933 126113104 chr2,126112897,126113104,+,L2c,LINE,L2,3182,3386,-1,126109716,126113105 -4 + chr2 126117923 126117985 chr2,126117783,126118059,-,L2c,LINE,L2,-61,3326,3022,126117722,126121080 +1 - chr2 126308510 126308563 chr2,126307723,126308563,-,LTR1A2,LTR,ERV1,0,837,1,126307723,126308563 -1 - chr2 126308578 126308645 chr2,126308578,126308865,+,AluY,SINE,Alu,1,287,-24,126308578,126308889 +4 + chr2 126901869 126902097 chr2,126901685,126902126,+,LTR33,LTR,ERVL,35,500,-15,126901651,126902141 +5 + chr2 127024252 127024658 chr2,127023858,127024658,+,L1MC5a,LINE,L1,694,1579,-1198,127023165,127025856 -5 + chr2 127026334 127026629 chr2,127026334,127026629,-,AluSz,SINE,Alu,-10,302,3,127026324,127026631 -6 - chr2 127026632 127026680 chr2,127026632,127026680,-,MER5C,DNA,hAT-Charlie,-143,170,130,127026489,127026809 -6 - chr2 127026680 127026711 chr2,127026680,127026711,+,(AGGC)n,Simple_repeat,Simple_repeat,1,31,0,127026680,127026711 +6 + chr2 127026711 127026825 chr2,127026711,127026825,-,MER5C,DNA,hAT-Charlie,-184,129,27,127026527,127026851 -6 - chr2 127026978 127027342 chr2,127026978,127027342,-,L1M5,LINE,L1,-1081,5065,4639,127025897,127031980 -6 - chr2 127027354 127027399 chr2,127027354,127027399,+,(AC)n,Simple_repeat,Simple_repeat,1,45,0,127027354,127027399 +6 + chr2 127027399 127027670 chr2,127027399,127027670,+,L1MC5a,LINE,L1,1572,1843,-934,127025828,127028604 +6 + chr2 127027672 127027792 chr2,127027672,127027792,-,FLAM_A,SINE,Alu,-18,124,5,127027654,127027796 -6 - chr2 127027797 127028567 chr2,127027797,127028567,+,L1MC5a,LINE,L1,1970,2764,-13,127025828,127028580 +6 + chr2 127028601 127029107 chr2,127028601,127029107,-,L1PA8,LINE,L1,-1,6171,5665,127028600,127034771 -6 - chr2 127029121 127029368 chr2,127029121,127029368,+,L1M5,LINE,L1,5197,5452,-672,127023925,127030040 +6 + chr2 127029386 127029489 chr2,127029386,127029489,+,L1M5,LINE,L1,5513,5613,-511,127023874,127030000 +6 + chr2 127029492 127029686 chr2,127029492,127030329,+,L1MC3,LINE,L1,6759,7629,-156,127022734,127030485 +5 + chr2 127398727 127399040 chr2,127398727,127399040,-,AluSx,SINE,Alu,-1,311,1,127398726,127399040 -6 - chr2 127399243 127399770 chr2,127399243,127399770,+,L1MC4,LINE,L1,6685,7362,-680,127392559,127400450 +6 + chr2 127400012 127400088 chr2,127400012,127400088,+,MIRb,SINE,MIR,50,136,-132,127399963,127400220 +6 + chr2 127400091 127400539 chr2,127400091,127400539,+,L1ME1,LINE,L1,5592,6135,-309,127394500,127400848 +6 + chr2 127400546 127400580 chr2,127400546,127400632,+,MIR,SINE,MIR,139,225,-37,127400408,127400669 +5 + chr2 127463713 127463788 chr2,127463713,127463788,+,MIRb,SINE,MIR,13,104,-164,127463701,127463952 +6 + chr2 127468014 127468126 chr2,127468011,127468229,+,MIR,SINE,MIR,8,252,-10,127468004,127468239 +3 + chr2 127470526 127470693 chr2,127470526,127470693,+,MIRb,SINE,MIR,27,220,-48,127470500,127470741 +6 + chr2 127488058 127488146 chr2,127488058,127488868,+,L2a,LINE,L2,2158,3066,-353,127485901,127489221 +4 + chr2 127498708 127498830 chr2,127498662,127498996,-,L1ME4b,LINE,L1,-534,358,10,127498128,127499005 -3 - chr2 127626498 127626794 chr2,127626498,127626794,+,AluSx,SINE,Alu,1,298,-14,127626498,127626808 -6 + chr2 127843675 127843826 chr2,127843675,127843826,+,MLT1A1,LTR,ERVL-MaLR,1,164,-244,127843675,127844070 -6 + chr2 127843826 127844126 chr2,127843826,127844126,+,AluJb,SINE,Alu,1,302,-10,127843826,127844136 -6 + chr2 127844126 127844353 chr2,127844126,127844353,+,MLT1A1,LTR,ERVL-MaLR,165,407,-1,127843962,127844354 -6 + chr2 127844647 127844949 chr2,127844647,127844949,-,AluSq2,SINE,Alu,-7,306,5,127844640,127844953 +6 - chr2 127844987 127845080 chr2,127844987,127845080,-,MIRb,SINE,MIR,-2,266,161,127844985,127845240 +6 - chr2 127845235 127845331 chr2,127845235,127845331,+,U6,snRNA,snRNA,1,97,-10,127845235,127845341 -6 + chr2 127845373 127845674 chr2,127845373,127845674,-,AluSp,SINE,Alu,-9,304,1,127845364,127845674 +6 - chr2 127886609 127886641 chr2,127886609,127886641,+,(CCTCG)n,Simple_repeat,Simple_repeat,1,33,0,127886609,127886641 +6 + chr2 128581389 128581576 chr2,128581389,128581587,+,L2b,LINE,L2,3092,3283,-92,128578298,128581679 -1 + chr2 129242371 129242454 chr2,129242371,129242454,-,L2a,LINE,L2,-4,3422,3340,129242367,129245793 +6 - chr2 129242653 129243650 chr2,129242653,129243683,+,BSR/Beta,Satellite,Satellite,1,1004,0,129242653,129243683 -2 + chr2 129244152 129244303 chr2,129244152,129244303,-,L1MEd,LINE,L1,-5640,1446,1253,129238512,129245555 +6 - chr2 129249866 129250074 chr2,129249699,129250077,-,MLT1E2,LTR,ERVL-MaLR,-7,620,231,129249692,129250307 +3 - chr2 129877334 129877383 chr2,129877235,129877383,-,Charlie15b,DNA,hAT-Charlie,-909,152,6,129876326,129877388 +4 - chr2 129944652 129945643 chr2,129944435,129945643,-,L1MC4a,LINE,L1,-1,7881,6676,129944434,129952318 -2 - chr2 129945636 129945866 chr2,129945636,129945866,+,L1MC4a,LINE,L1,6404,6639,-1243,129939233,129947109 +6 + chr2 129945848 129945945 chr2,129945848,129945945,+,L1ME3A,LINE,L1,5601,5702,-472,129940248,129946417 +6 + chr2 129945945 129946248 chr2,129945945,129946248,+,AluJo,SINE,Alu,2,308,-4,129945944,129946252 +6 + chr2 129946252 129946342 chr2,129946252,129946342,+,(AAAG)n,Simple_repeat,Simple_repeat,1,95,0,129946252,129946342 +6 + chr2 129946350 129946658 chr2,129946350,129946658,+,L1ME3A,LINE,L1,5699,6096,-77,129940652,129946735 +6 + chr2 130107684 130107806 chr2,130107451,130107978,+,MER1A,DNA,hAT-Charlie,1,529,0,130107451,130107978 +1 + chr2 130109287 130109310 chr2,130109204,130109310,-,U6,snRNA,snRNA,-1,106,1,130109203,130109310 -2 - chr2 130537027 130537182 chr2,130537027,130537423,-,L1MEh,LINE,L1,-1200,1035,596,130535827,130538018 -5 - chr2 130583549 130583703 chr2,130583370,130583703,+,L1MEh,LINE,L1,704,1035,-1200,130582667,130584903 -5 + chr2 130743721 130743838 chr2,130743721,130743838,+,LTR16E2,LTR,ERVL,438,557,-11,130743284,130743849 -6 + chr2 130749695 130749714 chr2,130749370,130749714,-,AluSx3,SINE,Alu,-7,304,1,130749363,130749714 +5 - chr2 130755851 130755879 chr2,130755851,130755901,+,(GCTGG)n,Simple_repeat,Simple_repeat,1,53,0,130755851,130755901 -1 + chr2 130831304 130831415 chr2,130831304,130831415,-,MIRb,SINE,MIR,-86,182,62,130831218,130831476 +6 - chr2 130831842 130831881 chr2,130831842,130831881,+,(CCTGC)n,Simple_repeat,Simple_repeat,1,39,0,130831842,130831881 -6 + chr2 130832135 130832167 chr2,130832135,130832167,+,(CCT)n,Simple_repeat,Simple_repeat,1,32,0,130832135,130832167 -6 + chr2 130832357 130832429 chr2,130832357,130832429,+,MIRc,SINE,MIR,100,175,-93,130832258,130832522 -6 + chr2 130833001 130833116 chr2,130833001,130833312,+,AluSx1,SINE,Alu,1,311,-1,130833001,130833313 -2 + chr2 130835968 130836025 chr2,130835968,130836145,-,ORSL,DNA,hAT-Tip100,0,275,88,130835968,130836232 +2 - chr2 130836310 130836503 chr2,130836309,130836503,+,MIR3,SINE,MIR,1,192,-16,130836309,130836519 -4 + chr2 130836821 130836939 chr2,130836821,130836939,+,G-rich,Low_complexity,Low_complexity,1,121,0,130836821,130836939 -6 + chr2 131403159 131403251 chr2,131403159,131403347,+,L1M5,LINE,L1,3577,3765,-2381,131399583,131405728 +4 + chr2 131408775 131408895 chr2,131408775,131408895,-,L2c,LINE,L2,-7,3380,3258,131408768,131412152 -6 - chr2 131637202 131637643 chr2,131637202,131637643,-,L1P2,LINE,L1,-3745,2574,2149,131633457,131639791 -6 - chr2 131637813 131638117 chr2,131637813,131638117,-,AluJr,SINE,Alu,-16,296,2,131637797,131638118 -6 - chr2 131639102 131639178 chr2,131639102,131639588,+,L1ME4c,LINE,L1,5020,5480,-686,131634083,131640274 +4 + chr2 131649413 131649615 chr2,131649413,131651017,-,L1MA1,LINE,L1,-9,6293,4685,131649404,131655701 -5 - chr2 131965885 131966214 chr2,131965885,131966214,-,AluY,SINE,Alu,0,311,1,131965885,131966214 +6 - chr2 131966263 131966772 chr2,131966263,131967512,+,LTR12D,LTR,ERV1,1,1254,0,131966263,131967512 -2 + chr2 131967316 131967390 chr2,131966263,131967512,+,LTR12D,LTR,ERV1,1,1254,0,131966263,131967512 -3 + chr2 131979782 131979873 chr2,131979698,131980069,-,THE1B,LTR,ERVL-MaLR,0,364,1,131979698,131980069 +1 - chr2 131983937 131984068 chr2,131983383,131984068,+,L1M4,LINE,L1,5594,6277,-405,131977790,131984473 -5 + chr2 132285795 132285825 chr2,132285453,132285825,+,L1MB8,LINE,L1,5797,6135,-43,132279657,132285868 -5 + chr2 132294318 132294377 chr2,132294192,132294408,-,MLT1H,LTR,ERVL-MaLR,-52,497,272,132294140,132294679 +1 - chr2 132345616 132345648 chr2,132345566,132345648,-,LTR50,LTR,ERVL,-705,90,1,132344861,132345648 +5 - chr2 132345651 132345798 chr2,132345651,132345798,-,L1ME3B,LINE,L1,-3299,2847,2666,132342352,132348463 +6 - chr2 132346898 132346922 chr2,132346898,132346922,+,(GGTA)n,Simple_repeat,Simple_repeat,1,24,0,132346898,132346922 -6 + chr2 132666672 132666721 chr2,132666584,132666721,+,MIRc,SINE,MIR,89,229,-39,132666496,132666760 +2 + chr2 132929879 132929945 chr2,132929801,132929945,+,MLT2F,LTR,ERVL,1,146,-517,132929801,132930462 +2 + chr2 132930002 132930154 chr2,132930002,132930154,+,MLT2F,LTR,ERVL,490,663,0,132929513,132930154 +6 + chr2 132930275 132930768 chr2,132930275,132930768,+,MLT2B2,LTR,ERVL,1,510,-5,132930275,132930773 +6 + chr2 132930875 132931035 chr2,132930875,132931035,-,MIR,SINE,MIR,-69,193,11,132930806,132931045 -6 - chr2 132931190 132931283 chr2,132931190,132931283,+,MER57A1,LTR,ERV1,1,93,-339,132931190,132931622 +6 + chr2 132931317 132931494 chr2,132931317,132931519,+,MER57A1,LTR,ERV1,220,432,0,132931098,132931519 +5 + chr2 133117004 133117157 chr2,133116974,133117157,+,MIR,SINE,MIR,1,205,-57,133116974,133117214 +1 + chr2 133117174 133117246 chr2,133117174,133117246,+,L2a,LINE,L2,3322,3393,-33,133113853,133117279 +6 + chr2 133117984 133118270 chr2,133117984,133118270,+,L2b,LINE,L2,3031,3330,-45,133114954,133118315 +6 + chr2 133118508 133118552 chr2,133118508,133118552,-,L2c,LINE,L2,0,3387,3341,133118508,133121892 -6 - chr2 133118520 133118575 chr2,133118520,133118575,-,MIR,SINE,MIR,-9,253,200,133118511,133118774 -6 - chr2 133118992 133119052 chr2,133118992,133119303,-,AluSx1,SINE,Alu,-4,308,1,133118988,133119303 -5 - chr2 133433496 133433792 chr2,133433378,133433792,+,MamRTE1,LINE,RTE-BovB,2676,3107,-705,133430703,133434497 -4 + chr2 133554315 133554395 chr2,133553816,133554395,-,MLT1E,LTR,ERVL-MaLR,0,653,1,133553816,133554395 -1 - chr2 133558027 133558037 chr2,133557958,133558037,-,MIR3,SINE,MIR,-8,200,123,133557950,133558159 -2 - chr2 134735464 134735581 chr2,134735424,134735799,-,MER74B,LTR,ERVL,-74,548,194,134735350,134735992 +5 - chr2 134868944 134869040 chr2,134868866,134869040,+,MIR3,SINE,MIR,32,207,-1,134868835,134869041 -4 + chr2 134877520 134877643 chr2,134877307,134877653,-,MLT1F,LTR,ERVL-MaLR,-28,520,180,134877279,134877832 +3 - chr2 135821675 135821783 chr2,135821531,135821783,-,AluJb,SINE,Alu,-63,249,7,135821468,135821789 -2 - chr2 135821858 135821991 chr2,135821858,135821991,+,MIRc,SINE,MIR,106,262,-6,135821753,135821997 +6 + chr2 135822288 135822482 chr2,135822288,135822482,-,MER5A,DNA,hAT-Charlie,-1,188,1,135822287,135822482 -6 - chr2 135822519 135822617 chr2,135822519,135822617,-,L1MB3,LINE,L1,0,6183,6078,135822519,135828694 -6 - chr2 135822711 135823087 chr2,135822711,135823142,+,MSTB2,LTR,ERVL-MaLR,1,457,0,135822711,135823142 +5 + chr2 135985448 135985495 chr2,135985448,135985495,+,(CTGGACA)n,Simple_repeat,Simple_repeat,1,51,0,135985448,135985495 +1 + chr2 135993832 135993889 chr2,135993684,135993889,+,MIR,SINE,MIR,54,261,-1,135993631,135993890 +1 + chr2 135996192 135996408 chr2,135995979,135996475,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,135995979,135996475 +3 + chr2 135997123 135997242 chr2,135997089,135997261,-,AluJr4,SINE,Alu,-12,300,137,135997077,135997397 -3 - chr2 136000380 136000409 chr2,136000380,136000409,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,136000380,136000409 +5 + chr2 136002001 136002075 chr2,136001844,136002075,+,L2a,LINE,L2,3140,3426,0,135998705,136002075 +2 + chr2 136003245 136003367 chr2,136003224,136003524,-,AluSq2,SINE,Alu,-13,300,1,136003211,136003524 -3 - chr2 136003743 136003822 chr2,136003713,136004110,+,L2c,LINE,L2,2333,2748,-671,136001381,136004781 +3 + chr2 136007296 136007405 chr2,136007296,136007405,+,MER5A,DNA,hAT-Charlie,3,97,-92,136007294,136007497 +5 + chr2 136007405 136007748 chr2,136007405,136007748,+,L1PA8,LINE,L1,5824,6168,-4,136001582,136007752 +5 + chr2 136008937 136009073 chr2,136008937,136009183,+,AluJr,SINE,Alu,62,293,-19,136008876,136009202 +5 + chr2 136012465 136012794 chr2,136012322,136012794,+,L2c,LINE,L2,2939,3385,-2,136009384,136012796 +1 + chr2 136077892 136077966 chr2,136077732,136077966,-,MLT1N2,LTR,ERVL-MaLR,-341,221,1,136077391,136077966 -1 - chr2 136231113 136231677 chr2,136231113,136231677,+,L1ME3C,LINE,L1,5654,6225,-17,136225460,136231694 +6 + chr2 138105477 138105628 chr2,138104832,138105628,-,Charlie1a,DNA,hAT-Charlie,-310,1145,343,138104522,138105970 -2 - chr2 138418284 138418485 chr2,138418119,138419125,+,L1ME3A,LINE,L1,5089,6165,-8,138413031,138419133 -5 + chr2 138436602 138436613 chr2,138436602,138436679,+,MIRb,SINE,MIR,129,203,-65,138436474,138436744 -2 + chr2 138446248 138446314 chr2,138446226,138446314,-,7SK,RNA,RNA,-233,98,1,138445993,138446314 +4 - chr2 138473492 138473765 chr2,138473462,138473765,-,AluJo,SINE,Alu,-8,304,1,138473454,138473765 -2 - chr2 138473765 138473843 chr2,138473765,138473843,+,Charlie15a,DNA,hAT-Charlie,138,218,-6,138473628,138473849 +6 + chr2 138500755 138500880 chr2,138500618,138500906,+,AluJo,SINE,Alu,1,303,-9,138500618,138500915 -3 + chr2 138574310 138574334 chr2,138574310,138574334,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,138574310,138574334 +6 + chr2 138599689 138599960 chr2,138599689,138599960,-,L1MA5A,LINE,L1,-5,6292,6018,138599684,138605977 +6 - chr2 138599968 138600653 chr2,138599968,138600653,+,Zaphod,DNA,hAT-Tip100,2411,3129,-902,138597558,138601555 -6 + chr2 138600653 138600790 chr2,138600653,138600790,-,AluSx,SINE,Alu,-175,137,2,138600478,138600791 +6 - chr2 138600791 138601155 chr2,138600791,138601155,+,Zaphod,DNA,hAT-Tip100,3637,4028,-3,138597155,138601158 -6 + chr2 138601420 138601828 chr2,138601420,138601828,+,MLT1C,LTR,ERVL-MaLR,1,422,-45,138601420,138601873 -6 + chr2 138601893 138602023 chr2,138601893,138602023,+,L2b,LINE,L2,3057,3207,-180,138598837,138602203 -6 + chr2 139378910 139379023 chr2,139378721,139379023,-,AluJo,SINE,Alu,-12,300,2,139378709,139379024 -2 - chr2 139469956 139469984 chr2,139469956,139470155,-,Tigger15a,DNA,TcMar-Tigger,-481,234,1,139469475,139470155 -4 - chr2 139477561 139477747 chr2,139477561,139477876,+,LTR12F,LTR,ERV1,198,519,0,139477364,139477876 +5 + chr2 139825841 139825877 chr2,139825816,139825980,+,MER5A1,DNA,hAT-Charlie,1,164,-2,139825816,139825982 -1 + chr2 140116391 140116444 chr2,140116310,140116655,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,140116310,140116655 +3 - chr2 143171955 143172036 chr2,143171905,143172226,-,MLT1J,LTR,ERVL-MaLR,-135,475,93,143171770,143172318 +1 - chr2 143172151 143172172 chr2,143171905,143172226,-,MLT1J,LTR,ERVL-MaLR,-135,475,93,143171770,143172318 +1 - chr2 143295421 143295439 chr2,143295336,143295676,-,L2c,LINE,L2,-25,3362,3007,143295311,143298682 +5 - chr2 143295586 143295676 chr2,143295336,143295676,-,L2c,LINE,L2,-25,3362,3007,143295311,143298682 +5 - chr2 143305365 143305460 chr2,143304724,143305477,+,L1PA7,LINE,L1,5388,6151,-3,143299337,143305480 -3 + chr2 143518969 143519022 chr2,143518969,143519022,-,MIR,SINE,MIR,-113,149,95,143518856,143519116 +6 - chr2 143563932 143564167 chr2,143563862,143564392,-,MLT1F2,LTR,ERVL-MaLR,-9,551,1,143563853,143564392 +3 - chr2 143597937 143598002 chr2,143597803,143598127,-,MLT1A0,LTR,ERVL-MaLR,-17,348,1,143597786,143598127 +1 - chr2 143676165 143676581 chr2,143674576,143676961,-,Tigger1,DNA,TcMar-Tigger,0,2418,2,143674576,143676962 +5 - chr2 143741090 143741122 chr2,143741029,143741122,-,MamGypsy2-LTR,LTR,Gypsy,-90,93,6,143740939,143741127 +4 - chr2 143766620 143766865 chr2,143766156,143766865,+,MER44C,DNA,TcMar-Tigger,1,732,-1,143766156,143766866 -5 + chr2 143941109 143941164 chr2,143941109,143941203,+,MIR3,SINE,MIR,42,135,-73,143941068,143941276 +4 + chr2 143964142 143964156 chr2,143964142,143964292,+,L2c,LINE,L2,3248,3387,0,143960895,143964292 +5 + chr2 144494778 144494881 chr2,144494778,144494881,+,OldhAT1,DNA,hAT-Ac,1896,1994,-854,144492883,144495735 -6 + chr2 144494922 144494958 chr2,144494922,144494958,+,A-rich,Low_complexity,Low_complexity,1,36,0,144494922,144494958 -6 + chr2 144496672 144496823 chr2,144496672,144496823,+,MIRb,SINE,MIR,115,258,-10,144496558,144496833 -6 + chr2 144520395 144520481 chr2,144520395,144520481,+,(CCTC)n,Simple_repeat,Simple_repeat,1,88,0,144520395,144520481 +5 + chr2 144671602 144671664 chr2,144671265,144671852,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,144671265,144671852 -3 - chr2 144688413 144688480 chr2,144688270,144688480,-,MamRTE1,LINE,RTE-BovB,-1026,2786,2570,144687244,144691049 +5 - chr2 144768098 144768213 chr2,144767873,144768213,+,LTR33,LTR,ERVL,109,489,-26,144767765,144768239 +2 + chr2 144881630 144881931 chr2,144881562,144881931,-,MLT1B,LTR,ERVL-MaLR,-13,377,1,144881549,144881931 +4 - chr2 144889947 144890018 chr2,144889900,144890018,-,L2b,LINE,L2,-11,3364,3244,144889889,144893261 -2 - chr2 144903666 144903803 chr2,144903655,144904227,+,L2a,LINE,L2,2864,3426,0,144900792,144904227 +5 + chr2 145043626 145043986 chr2,145043608,145043986,+,LTR16E1,LTR,ERVL,143,534,-4,145043466,145043990 +5 + chr2 145057651 145057925 chr2,145057613,145057925,-,AluJb,SINE,Alu,0,312,3,145057613,145057927 -2 - chr2 145070820 145070941 chr2,145070517,145071899,-,ERVL-E-int,LTR,ERVL,-679,4988,3501,145069838,145075399 -3 - chr2 145072524 145072536 chr2,145072410,145072536,-,OldhAT1,DNA,hAT-Ac,-2326,522,392,145070084,145072927 -2 - chr2 145072551 145072746 chr2,145072551,145072746,-,MLT1N2,LTR,ERVL-MaLR,0,562,356,145072551,145073101 -5 - chr2 145072816 145073179 chr2,145072816,145073179,-,L1ME4a,LINE,L1,-246,5878,5564,145072570,145078742 -5 - chr2 145073435 145073742 chr2,145073435,145073742,-,AluJr4,SINE,Alu,-12,300,1,145073423,145073742 -6 - chr2 145073753 145073773 chr2,145073753,145073773,+,(TAT)n,Simple_repeat,Simple_repeat,1,20,0,145073753,145073773 +6 + chr2 145076107 145076361 chr2,145076107,145076361,-,MamRep38,DNA,hAT,-33,262,3,145076074,145076363 -6 - chr2 145076497 145076540 chr2,145076497,145076540,+,(TG)n,Simple_repeat,Simple_repeat,1,43,0,145076497,145076540 +6 + chr2 145076583 145076729 chr2,145076583,145076729,+,L1ME3A,LINE,L1,6018,6172,-1,145070566,145076730 +5 + chr2 145113274 145113443 chr2,145113274,145113458,+,MER5A,DNA,hAT-Charlie,3,189,0,145113272,145113458 +4 + chr2 145116413 145116510 chr2,145116363,145116665,-,AluSc,SINE,Alu,-8,301,1,145116355,145116665 -3 - chr2 145151471 145152502 chr2,145151280,145152557,+,HSMAR1,DNA,TcMar-Mariner,1,1287,0,145151280,145152557 +5 + chr2 145164236 145164312 chr2,145164236,145164378,-,MIR3,SINE,MIR,-6,202,67,145164230,145164444 -4 - chr2 145174887 145174992 chr2,145174856,145175177,-,AluY,SINE,Alu,0,311,1,145174856,145175177 -3 - chr2 145178877 145178967 chr2,145178713,145178988,-,AluJr,SINE,Alu,-38,274,2,145178675,145178989 -3 - chr2 145181033 145181077 chr2,145181033,145181077,+,A-rich,Low_complexity,Low_complexity,1,44,0,145181033,145181077 +6 + chr2 145181244 145181293 chr2,145181244,145181564,+,AluJo,SINE,Alu,3,296,-16,145181242,145181580 +4 + chr2 145182204 145182333 chr2,145182193,145182333,-,MIR1_Amn,SINE,MIR,-75,155,15,145182118,145182347 -2 - chr2 145294360 145294406 chr2,145294360,145294594,+,Helitron2Na_Mam,RC?,Helitron?,56,307,-17,145294305,145294611 -2 + chr2 145295097 145295188 chr2,145295058,145295440,-,MLT2B4,LTR,ERVL,-50,512,26,145295008,145295465 +3 - chr2 145325406 145325439 chr2,145325342,145325539,+,MIRb,SINE,MIR,26,260,-8,145325317,145325547 -3 + chr2 145569294 145569901 chr2,145568981,145569941,-,ERV3-16A3_I-int,LTR,ERVL,-55,5171,4155,145568926,145574095 +5 - chr2 145577779 145577902 chr2,145577749,145577917,+,AluJb,SINE,Alu,129,294,-18,145577621,145577935 -3 + chr2 145587988 145588024 chr2,145587904,145588255,-,THE1B,LTR,ERVL-MaLR,0,364,2,145587904,145588256 +1 - chr2 146837749 146837802 chr2,146836468,146837802,+,MLT1H-int,LTR,ERVL-MaLR,3,1402,-7,146836466,146837809 +1 + chr2 146838040 146838205 chr2,146837807,146838292,+,MLT1H,LTR,ERVL-MaLR,1,523,-26,146837807,146838318 +3 + chr2 146850256 146850310 chr2,146850224,146850506,+,ERVL-E-int,LTR,ERVL,5401,5667,0,146844824,146850506 +5 + chr2 146879909 146879949 chr2,146879820,146880104,-,AluSc8,SINE,Alu,-26,285,1,146879794,146880104 -1 - chr2 146880825 146880899 chr2,146880825,146881720,-,LTR12,LTR,ERV1,0,826,1,146880825,146881720 -4 - chr2 146888087 146888173 chr2,146887891,146888546,-,L1MEc,LINE,L1,-1312,5007,4320,146886579,146892865 -3 - chr2 146898184 146898218 chr2,146898135,146898466,-,MLT1A0,LTR,ERVL-MaLR,-32,333,1,146898103,146898466 -5 - chr2 148866470 148866577 chr2,148866416,148866584,-,MIR,SINE,MIR,-30,238,58,148866386,148866641 +5 - chr2 148878078 148878541 chr2,148878078,148878541,-,L1ME3A,LINE,L1,-7,6166,5664,148878071,148884204 +6 - chr2 148879081 148879303 chr2,148879081,148879303,+,L2c,LINE,L2,3150,3377,-10,148875932,148879313 -6 + chr2 148883523 148883966 chr2,148883512,148883966,-,L1ME4a,LINE,L1,-87,6037,5550,148883425,148889515 +5 - chr2 149769320 149769406 chr2,149769307,149769426,+,FLAM_A,SINE,Alu,10,132,-10,149769298,149769436 -3 + chr2 149804182 149804220 chr2,149803779,149804247,+,L1M5,LINE,L1,3039,3496,-2650,149800741,149806897 -3 + chr2 150171423 150171588 chr2,150170393,150171588,-,LTR12C,LTR,ERV1,0,1579,3,150170393,150171590 -1 - chr2 150171588 150171603 chr2,150171588,150171638,-,L2,LINE,L2,-1259,2160,2110,150170329,150173747 -4 - chr2 150245583 150245687 chr2,150245510,150245747,-,L1MD1,LINE,L1,-6374,259,18,150239136,150245764 +3 - chr2 150300973 150301080 chr2,150300309,150303469,-,L1ME3,LINE,L1,-1245,4901,1438,150299064,150304906 -5 - chr2 150552532 150552877 chr2,150552442,150552877,-,MER61D,LTR,ERV1,0,501,2,150552442,150552878 +5 - chr2 150553198 150553251 chr2,150553198,150553251,+,MER5A,DNA,hAT-Charlie,33,86,-103,150553166,150553354 -6 + chr2 150566134 150566197 chr2,150565867,150566292,+,MLT2D,LTR,ERVL,1,414,0,150565867,150566292 +1 + chr2 150567743 150567770 chr2,150567743,150567770,+,GA-rich,Low_complexity,Low_complexity,1,28,0,150567743,150567770 +6 + chr2 150572163 150572221 chr2,150572078,150572440,-,THE1B,LTR,ERVL-MaLR,0,364,1,150572078,150572440 +1 - chr2 150595283 150595590 chr2,150595283,150595693,+,MSTB1,LTR,ERVL-MaLR,1,432,0,150595283,150595693 -2 + chr2 150612381 150612504 chr2,150612298,150612504,-,MIRb,SINE,MIR,-9,259,4,150612289,150612507 -1 - chr2 150628897 150628961 chr2,150628643,150628961,-,MER45C,DNA,hAT-Tip100,-577,376,1,150628066,150628961 -1 - chr2 150629020 150629121 chr2,150629020,150629196,+,MLT1L,LTR,ERVL-MaLR,426,608,-2,150628595,150629198 +1 + chr2 150634636 150634716 chr2,150634619,150634716,-,L2b,LINE,L2,-1,3374,3277,150634618,150637992 -2 - chr2 150634954 150635116 chr2,150634954,150635151,+,MIR,SINE,MIR,22,236,-26,150634933,150635177 +5 + chr2 150993437 150993477 chr2,150993437,150993477,+,L3,LINE,CR1,4053,4092,-7,150989385,150993484 +6 + chr2 150995164 150995237 chr2,150994702,150995237,-,Charlie7,DNA,hAT-Charlie,-1918,694,214,150992784,150995450 -2 - chr2 151003090 151003132 chr2,151002658,151003132,-,L2a,LINE,L2,-167,3259,2760,151002491,151005891 -2 - chr2 151003146 151003474 chr2,151003146,151003640,+,L1MCb,LINE,L1,1,496,-5549,151003146,151009189 +5 + chr2 151043769 151043873 chr2,151043534,151043981,+,MSTB2,LTR,ERVL-MaLR,1,457,0,151043534,151043981 -3 + chr2 151047679 151047749 chr2,151047649,151047787,+,L2a,LINE,L2,3258,3418,-8,151044392,151047795 -3 + chr2 151117955 151118310 chr2,151117700,151118310,+,L1MEg,LINE,L1,312,959,-5125,151117389,151123435 -5 + chr2 151118312 151118374 chr2,151118312,151118530,+,L1MEg,LINE,L1,1132,1349,-4735,151117181,151123265 -2 + chr2 151134704 151134769 chr2,151134681,151134938,+,AluSz6,SINE,Alu,1,282,-30,151134681,151134968 -3 + chr2 152108816 152108985 chr2,152108722,152108985,-,MLT1I,LTR,ERVL-MaLR,-39,372,85,152108683,152109069 -2 - chr2 153187452 153187569 chr2,153187227,153187632,-,L1MA7,LINE,L1,-5890,391,5,153181337,153187636 +3 - chr2 153337714 153337768 chr2,153337714,153337768,+,L1PA15-16,LINE,L1,1317,1370,-5483,153336398,153343251 +6 + chr2 153423436 153423492 chr2,153422561,153423970,+,L1MEd,LINE,L1,3168,4703,-1443,153419394,153425413 -3 + chr2 153449671 153449820 chr2,153449589,153449985,-,MLT1A1,LTR,ERVL-MaLR,0,408,4,153449589,153449988 +1 - chr2 153592860 153593288 chr2,153592685,153593536,+,L1PBa1,LINE,L1,121,973,-5639,153592565,153599175 -1 + chr2 154436895 154437189 chr2,154436895,154437189,-,AluJo,SINE,Alu,-3,309,10,154436892,154437198 +6 - chr2 154437574 154437850 chr2,154437574,154437871,+,AluSc,SINE,Alu,1,297,-12,154437574,154437883 -2 + chr2 154445808 154445885 chr2,154445794,154445946,-,L2c,LINE,L2,-10,3377,3226,154445784,154449171 +3 - chr2 154454538 154454642 chr2,154454380,154454660,+,AluSz,SINE,Alu,1,293,-19,154454380,154454679 -3 + chr2 154696462 154696550 chr2,154696369,154696550,-,MIRc,SINE,MIR,-81,187,2,154696288,154696551 +5 - chr2 154965613 154965642 chr2,154965613,154965642,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,154965613,154965642 -6 + chr2 156011617 156011656 chr2,156011321,156011656,+,MER61A,LTR,ERV1,1,341,0,156011321,156011656 -5 + chr2 156011656 156011852 chr2,156011656,156012164,-,LTR8,LTR,ERV1,-186,505,1,156011470,156012164 +2 - chr2 156020537 156020737 chr2,156020537,156020737,-,MIRc,SINE,MIR,-48,220,5,156020489,156020741 +6 - chr2 156020897 156020977 chr2,156020897,156020977,-,MIR,SINE,MIR,0,262,181,156020897,156021157 +6 - chr2 156020994 156021034 chr2,156020994,156021034,+,A-rich,Low_complexity,Low_complexity,1,40,0,156020994,156021034 -6 + chr2 157877683 157877710 chr2,157877647,157877710,+,MIR,SINE,MIR,48,110,-152,157877600,157877862 +1 + chr2 157877849 157877973 chr2,157877849,157877973,+,L2b,LINE,L2,3246,3375,0,157874604,157877973 +6 + chr2 157878142 157878565 chr2,157878142,157878651,+,MER41C,LTR,ERV1,1,521,0,157878142,157878651 +5 + chr2 157917758 157918165 chr2,157917758,157918165,+,MLT1J2,LTR,ERVL-MaLR,3,412,-36,157917756,157918201 +6 + chr2 157918263 157918358 chr2,157918263,157918358,+,MamGypLTR1b,LTR,Gypsy,627,725,-57,157917637,157918415 +6 + chr2 158166650 158166723 chr2,158166364,158166815,+,MLT1G3,LTR,ERVL-MaLR,16,410,-145,158166349,158166960 +1 + chr2 158178061 158178112 chr2,158177976,158178181,-,MIR,SINE,MIR,-51,211,6,158177925,158178186 -3 - chr2 158207484 158207617 chr2,158207128,158207924,+,ERVL-E-int,LTR,ERVL,4455,5271,-396,158202674,158208320 +3 + chr2 158235730 158235826 chr2,158235720,158235826,-,LTR33,LTR,ERVL,-14,501,396,158235706,158236221 -2 - chr2 158235846 158236019 chr2,158235846,158236019,-,LTR33,LTR,ERVL,-233,282,101,158235613,158236119 -6 - chr2 158658972 158659103 chr2,158658972,158659103,+,MIRb,SINE,MIR,114,245,-23,158658859,158659126 -6 + chr2 158659416 158660485 chr2,158659416,158660485,-,L2b,LINE,L2,-15,3372,2110,158659401,158662594 +6 - chr2 158660791 158660859 chr2,158660791,158660859,-,L2b,LINE,L2,-5,3370,3307,158660786,158664165 +6 - chr2 158660948 158661055 chr2,158660948,158661055,-,MIR,SINE,MIR,-38,224,118,158660910,158661172 +6 - chr2 158690923 158690956 chr2,158690923,158691004,-,MIR,SINE,MIR,-97,165,84,158690826,158691087 -4 - chr2 158734728 158734820 chr2,158734613,158734820,-,MIRb,SINE,MIR,-39,229,3,158734574,158734822 +1 - chr2 158753710 158753775 chr2,158753710,158753779,-,L1MEh,LINE,L1,-2151,84,14,158751559,158753792 -5 - chr2 159395897 159395926 chr2,159395897,159395926,+,A-rich,Low_complexity,Low_complexity,1,29,0,159395897,159395926 +6 + chr2 159616567 159616587 chr2,159616567,159616587,+,(TC)n,Simple_repeat,Simple_repeat,1,21,0,159616567,159616587 +6 + chr2 159670708 159670813 chr2,159670270,159671099,-,L1MEf,LINE,L1,-4184,2058,1284,159666086,159672382 +5 - chr2 159693201 159693223 chr2,159693093,159693223,-,L1MC4,LINE,L1,-2365,3849,3724,159690728,159696946 +5 - chr2 159693424 159693688 chr2,159693424,159693688,-,AluJb,SINE,Alu,-12,300,35,159693412,159693722 +6 - chr2 159693710 159693868 chr2,159693710,159693868,-,FAM,SINE,Alu,-12,173,1,159693698,159693868 +6 - chr2 159693939 159693989 chr2,159693939,159693989,-,L1MB7,LINE,L1,-19,6165,6121,159693920,159700109 +6 - chr2 159693989 159694365 chr2,159693989,159694365,+,MLT1B,LTR,ERVL-MaLR,15,390,0,159693975,159694365 -6 + chr2 159694365 159695420 chr2,159694365,159695743,-,L1MB7,LINE,L1,-57,6127,4798,159694308,159700540 +2 - chr2 160849535 160849631 chr2,160849535,160849631,-,L2c,LINE,L2,-7,3380,3272,160849528,160852902 +6 - chr2 160849979 160850052 chr2,160849979,160850052,+,L2b,LINE,L2,3073,3142,-233,160846907,160850285 -6 + chr2 160850143 160850490 chr2,160850143,160850490,+,L1MC5a,LINE,L1,2372,2751,-26,160847772,160850516 -6 + chr2 160850498 160850607 chr2,160850498,160850607,+,MIR3,SINE,MIR,42,176,-32,160850457,160850639 -6 + chr2 161096410 161096568 chr2,161096410,161096582,-,X1_LINE,LINE,CR1,0,645,481,161096410,161097062 +2 - chr2 161159165 161159236 chr2,161158696,161159263,+,L1MC,LINE,L1,5135,5711,-622,161153562,161159885 -3 + chr2 161254585 161254668 chr2,161254585,161254861,+,L1MB3,LINE,L1,5891,6176,-7,161248695,161254868 -1 + chr2 161423515 161423553 chr2,161423515,161423553,+,G-rich,Low_complexity,Low_complexity,1,38,0,161423515,161423553 -6 + chr2 161424228 161424240 chr2,161424228,161424278,+,(CCGGC)n,Simple_repeat,Simple_repeat,1,53,0,161424228,161424278 +4 + chr2 161434226 161434255 chr2,161434226,161434255,+,(CA)n,Simple_repeat,Simple_repeat,1,29,0,161434226,161434255 +6 + chr2 161434428 161434583 chr2,161434428,161434583,+,MER5B,DNA,hAT-Charlie,16,164,-14,161434413,161434597 +6 + chr2 161434686 161436135 chr2,161434686,161436135,-,L1PA15,LINE,L1,-117,6048,4586,161434569,161440720 -6 - chr2 162074784 162074895 chr2,162074763,162074895,-,MIR,SINE,MIR,-112,156,20,162074651,162074914 -2 - chr2 162074978 162075007 chr2,162074978,162075007,+,(ATTC)n,Simple_repeat,Simple_repeat,1,30,0,162074978,162075007 +6 + chr2 162075019 162075127 chr2,162075019,162075127,-,L2a,LINE,L2,-1,3425,3309,162075018,162078435 -6 - chr2 162093429 162093483 chr2,162093278,162093483,+,L3b,LINE,CR1,4758,4965,-267,162088521,162093750 +1 + chr2 162094444 162094550 chr2,162094431,162094550,-,UCON41,Unknown,Unknown,-13,126,1,162094418,162094550 -2 - chr2 162159762 162159789 chr2,162159232,162159789,-,L1MB7,LINE,L1,-58,6126,5562,162159174,162165350 -1 - chr2 162163078 162163091 chr2,162163078,162163205,+,MIRb,SINE,MIR,89,222,-46,162162990,162163251 +4 + chr2 162170207 162170258 chr2,162170207,162170258,+,(TTGAT)n,Simple_repeat,Simple_repeat,1,53,0,162170207,162170258 +6 + chr2 162171389 162171484 chr2,162171389,162171484,+,MIR3,SINE,MIR,103,197,-11,162171287,162171495 +6 + chr2 162171786 162172079 chr2,162171786,162172079,-,L1MA4,LINE,L1,-12,6288,5984,162171774,162178062 -6 - chr2 162172288 162172364 chr2,162172288,162172364,-,L2b,LINE,L2,0,3375,3296,162172288,162175659 -6 - chr2 162172523 162172714 chr2,162172523,162172714,-,MIR3,SINE,MIR,-12,196,1,162172511,162172714 -6 - chr2 162768936 162768959 chr2,162768878,162768959,-,UCON25,Unknown,Unknown,-132,143,67,162768746,162769025 -1 - chr2 162771966 162771991 chr2,162771966,162772187,+,MLT1L,LTR,ERVL-MaLR,375,602,-8,162771592,162772195 +4 + chr2 162784597 162784736 chr2,162784595,162784767,+,MIRb,SINE,MIR,18,206,-62,162784578,162784829 +3 + chr2 162796127 162796342 chr2,162796127,162796342,+,MIRb,SINE,MIR,24,241,-27,162796104,162796369 +6 + chr2 163749610 163749710 chr2,163749610,163749710,+,MER5A,DNA,hAT-Charlie,77,180,-9,163749534,163749719 -6 + chr2 163749817 163749885 chr2,163749817,163749885,+,(TCCT)n,Simple_repeat,Simple_repeat,1,68,0,163749817,163749885 -6 + chr2 164352120 164352223 chr2,164352042,164352431,-,MLT1C,LTR,ERVL-MaLR,0,467,1,164352042,164352431 +1 - chr2 164849237 164849266 chr2,164849237,164849266,+,(AAC)n,Simple_repeat,Simple_repeat,1,29,0,164849237,164849266 +6 + chr2 165077620 165077722 chr2,165077543,165077722,-,MLT1B,LTR,ERVL-MaLR,0,390,215,165077543,165077936 -2 - chr2 165801181 165801582 chr2,165801132,165801594,+,MLT1H,LTR,ERVL-MaLR,3,515,-34,165801130,165801628 +3 + chr2 165809922 165810010 chr2,165809922,165810233,+,AluSz,SINE,Alu,1,311,-1,165809922,165810234 +5 + chr2 165838860 165839002 chr2,165838860,165839002,+,MSTB,LTR,ERVL-MaLR,254,426,0,165838607,165839002 -6 + chr2 165933857 165933890 chr2,165933663,165933890,+,MLT1H,LTR,ERVL-MaLR,1,247,-302,165933663,165934192 +1 + chr2 165934025 165934076 chr2,165934025,165934152,+,MLT1H,LTR,ERVL-MaLR,436,549,0,165933590,165934152 +4 + chr2 165934734 165934789 chr2,165934599,165934889,+,L1ME4b,LINE,L1,56,361,-531,165934544,165935420 +3 + chr2 165947542 165947576 chr2,165947542,165947576,+,A-rich,Low_complexity,Low_complexity,1,34,0,165947542,165947576 +6 + chr2 165947888 165947903 chr2,165947691,165947903,-,LTR86A1,LTR,ERVL,-275,238,11,165947416,165947913 -2 - chr2 165948720 165948852 chr2,165948720,165948852,-,FLAM_C,SINE,Alu,-10,133,2,165948710,165948853 -6 - chr2 165949178 165949267 chr2,165949178,165949267,-,L2c,LINE,L2,-40,3347,3263,165949138,165952529 -6 - chr2 165957399 165957592 chr2,165956404,165957623,-,LTR12E,LTR,ERV1,0,1254,1,165956404,165957623 -1 - chr2 166027117 166027204 chr2,166027069,166027204,+,L2c,LINE,L2,3221,3366,-21,166023849,166027225 +2 + chr2 166075288 166075345 chr2,166075197,166075999,-,L1ME4b,LINE,L1,-9,883,65,166075188,166076063 -3 - chr2 166077088 166077150 chr2,166076982,166077150,-,L1M3f,LINE,L1,-5165,163,3,166071817,166077152 -2 - chr2 166092553 166092663 chr2,166092532,166092663,-,AluJr4,SINE,Alu,-179,133,3,166092353,166092665 -3 - chr2 166104274 166104348 chr2,166104274,166104460,-,L2c,LINE,L2,-1293,2126,1928,166102981,166106387 -4 - chr2 166109491 166109602 chr2,166109444,166109864,+,Tigger1,DNA,TcMar-Tigger,1,423,-1995,166109444,166111859 +3 + chr2 166249343 166249384 chr2,166248968,166249416,+,L2a,LINE,L2,2937,3425,-1,166246032,166249417 +3 + chr2 166296076 166296129 chr2,166296076,166296302,+,MIRb,SINE,MIR,35,267,-1,166296042,166296303 +4 + chr2 166298690 166298841 chr2,166298564,166300672,+,L2b,LINE,L2,998,3383,-4,166297567,166300676 +3 + chr2 166300931 166301102 chr2,166300910,166301102,-,AluSp,SINE,Alu,-17,296,104,166300893,166301205 -2 - chr2 166301102 166301134 chr2,166301102,166301134,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,166301102,166301134 +6 + chr2 166301177 166301587 chr2,166301177,166301587,+,MER57C2,LTR,ERV1,4,434,0,166301174,166301587 +6 + chr2 167124491 167124525 chr2,167124491,167124809,-,L2b,LINE,L2,0,3375,3065,167124491,167127873 +2 - chr2 167558320 167558333 chr2,167558320,167562649,+,L1P1,LINE,L1,5,4332,-1814,167558316,167564463 +5 + chr2 167814854 167815038 chr2,167814854,167815038,-,MER63A,DNA,hAT-Blackjack,-26,184,1,167814828,167815038 +6 - chr2 167815039 167815222 chr2,167815039,167815222,+,LTR16,LTR,ERVL,240,418,-20,167814800,167815242 -5 + chr2 167900732 167900782 chr2,167900210,167902016,+,L1M4a1,LINE,L1,24,1978,-601,167900187,167902617 -3 + chr2 167941109 167941144 chr2,167941032,167941369,-,THE1A,LTR,ERVL-MaLR,0,355,8,167941032,167941376 +1 - chr2 168777877 168777937 chr2,168777877,168777992,-,L2a,LINE,L2,0,3426,3309,168777877,168781300 +2 - chr2 168783012 168783090 chr2,168782419,168783114,+,MER50,LTR,ERV1,1,711,-23,168782419,168783137 -3 + chr2 168783139 168783171 chr2,168783130,168783171,+,(GT)n,Simple_repeat,Simple_repeat,1,41,0,168783130,168783171 -5 + chr2 168783171 168783471 chr2,168783171,168783681,-,MLT2B4,LTR,ERVL,-44,673,163,168783127,168783843 +2 - chr2 168783955 168784047 chr2,168783932,168784228,+,AluJb,SINE,Alu,1,289,-23,168783932,168784251 -3 + chr2 168784098 168784214 chr2,168783932,168784228,+,AluJb,SINE,Alu,1,289,-23,168783932,168784251 -3 + chr2 168786357 168786435 chr2,168786179,168786835,+,MER50,LTR,ERV1,12,655,-79,168786168,168786914 -1 + chr2 168786887 168786961 chr2,168786846,168787028,-,AluSx1,SINE,Alu,-131,181,1,168786715,168787028 +1 - chr2 169101066 169101195 chr2,169101009,169101195,-,MIR,SINE,MIR,-59,209,1,169100950,169101195 -2 - chr2 170333928 170334131 chr2,170333917,170334372,-,MLT1J,LTR,ERVL-MaLR,-48,464,10,170333869,170334381 +5 - chr2 170334505 170334610 chr2,170334505,170334713,-,MamGypLTR2c,LTR,Gypsy,-11,1057,838,170334494,170335550 +2 - chr2 170334787 170334879 chr2,170334787,170334920,+,L2b,LINE,L2,3221,3358,-17,170331567,170334937 -5 + chr2 170337849 170338033 chr2,170337585,170338033,-,Tigger2a,DNA,TcMar-Tigger,0,434,2,170337585,170338034 +4 - chr2 170338149 170338176 chr2,170338149,170338544,+,Tigger20a,DNA,TcMar-Tigger,555,972,-1,170337595,170338545 -2 + chr2 170340518 170340611 chr2,170340430,170340611,-,MER39,LTR,ERV1,0,707,256,170340430,170340866 +5 - chr2 170340611 170340774 chr2,170340611,170340807,-,MER21A,LTR,ERVL,-570,361,175,170340041,170340981 +5 - chr2 170343817 170343840 chr2,170343740,170343865,+,MIRb,SINE,MIR,26,164,-104,170343715,170343969 -3 + chr2 170344172 170344185 chr2,170343879,170344185,-,MLT1J,LTR,ERVL-MaLR,-6,506,197,170343873,170344381 +4 - chr2 170344185 170344301 chr2,170344185,170344465,+,AluSg7,SINE,Alu,1,279,-30,170344185,170344495 -2 + chr2 170344341 170344438 chr2,170344185,170344465,+,AluSg7,SINE,Alu,1,279,-30,170344185,170344495 -3 + chr2 170346178 170346194 chr2,170346066,170346194,+,MIRc,SINE,MIR,69,229,-39,170345998,170346233 -4 + chr2 170346194 170346405 chr2,170346194,170346407,+,MER30,DNA,hAT-Charlie,1,229,-1,170346194,170346408 -1 + chr2 170347952 170348020 chr2,170347745,170348020,-,L1MB5,LINE,L1,-9,6165,5880,170347736,170353899 +1 - chr2 170348020 170348125 chr2,170348020,170348135,+,AluJo,SINE,Alu,1,125,-187,170348020,170348322 -2 + chr2 170349516 170349634 chr2,170349516,170349827,+,AluSx1,SINE,Alu,1,312,0,170349516,170349827 -2 + chr2 170350995 170351091 chr2,170350995,170351091,+,(GAAG)n,Simple_repeat,Simple_repeat,1,97,0,170350995,170351091 -1 + chr2 170618628 170619013 chr2,170618535,170619450,-,MER11D,LTR,ERVK,-5,892,1,170618530,170619450 +5 - chr2 170619365 170619450 chr2,170618535,170619450,-,MER11D,LTR,ERVK,-5,892,1,170618530,170619450 +5 - chr2 170619450 170619644 chr2,170619450,170619737,-,MLT1F2,LTR,ERVL-MaLR,-100,460,119,170619350,170619855 +2 - chr2 170638369 170638425 chr2,170638295,170638425,-,UCON55,DNA,TcMar-Tigger,-58,134,1,170638237,170638425 +4 - chr2 170640374 170640414 chr2,170640320,170640414,-,MIRb,SINE,MIR,-23,245,148,170640297,170640561 +5 - chr2 170640491 170641000 chr2,170640491,170641000,+,MER113,DNA,hAT-Charlie,5,520,-1,170640487,170641001 -6 + chr2 170641430 170641463 chr2,170641168,170641631,+,L1ME4a,LINE,L1,5359,5826,-298,170635810,170641929 -3 + chr2 170644486 170644581 chr2,170644284,170644581,-,AluSq2,SINE,Alu,-11,302,6,170644273,170644586 +4 - chr2 170649922 170649975 chr2,170649885,170650007,+,MIR3,SINE,MIR,30,161,-47,170649856,170650054 -3 + chr2 170668325 170668400 chr2,170668166,170668400,-,MIR,SINE,MIR,0,262,2,170668166,170668401 +4 - chr2 170682395 170682474 chr2,170682360,170682474,-,L2a,LINE,L2,-2,3424,3309,170682358,170685782 +4 - chr2 170682912 170683059 chr2,170682912,170683092,+,AluSx,SINE,Alu,133,312,0,170682780,170683092 -2 + chr2 170712662 170712892 chr2,170712662,170712892,-,MIR,SINE,MIR,-20,242,7,170712642,170712898 +6 - chr2 170723086 170723132 chr2,170722833,170723132,-,AluSx1,SINE,Alu,-5,307,2,170722828,170723133 +5 - chr2 170727684 170727820 chr2,170727684,170727820,-,L2c,LINE,L2,0,3387,3252,170727684,170731071 +5 - chr2 170727826 170727855 chr2,170727826,170727922,+,L2a,LINE,L2,3262,3422,-4,170724565,170727926 -1 + chr2 170728579 170729062 chr2,170728517,170729062,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,170728517,170729062 +4 - chr2 170729164 170729440 chr2,170729164,170729653,+,MLT1J,LTR,ERVL-MaLR,7,510,-2,170729158,170729655 -1 + chr2 170730408 170730709 chr2,170730408,170730709,+,AluSq2,SINE,Alu,3,306,-7,170730406,170730716 -6 + chr2 170730717 170730997 chr2,170730717,170731015,+,AluSz,SINE,Alu,1,297,-15,170730717,170731030 -5 + chr2 170740734 170741287 chr2,170740734,170741309,+,LTR16D,LTR,ERVL,9,651,0,170740726,170741309 -2 + chr2 170743892 170743956 chr2,170743777,170744187,-,LTR52,LTR,ERVL,-2,419,1,170743775,170744187 +1 - chr2 170771317 170771359 chr2,170771317,170771359,+,(GGCCCCG)n,Simple_repeat,Simple_repeat,1,42,0,170771317,170771359 +6 + chr2 170778135 170778148 chr2,170778135,170778166,+,U2,snRNA,snRNA,5,35,-153,170778131,170778319 +5 + chr2 171773482 171774042 chr2,171773113,171774042,+,L1MEg,LINE,L1,1849,2831,-3315,171771265,171777357 +1 + chr2 171774048 171774125 chr2,171774048,171775537,+,SVA_C,Retroposon,SVA,2,1384,0,171774047,171775537 +4 + chr2 171774387 171775537 chr2,171774048,171775537,+,SVA_C,Retroposon,SVA,2,1384,0,171774047,171775537 +2 + chr2 171775555 171775621 chr2,171775555,171775621,+,L1MEg,LINE,L1,2845,2912,-3234,171772711,171778855 +6 + chr2 171775724 171775844 chr2,171775724,171776019,+,AluJb,SINE,Alu,1,281,-31,171775724,171776050 +5 + chr2 172106020 172106118 chr2,172106020,172106118,-,MIRc,SINE,MIR,-66,202,101,172105954,172106218 -6 - chr2 172109858 172109955 chr2,172109858,172109955,+,MIR,SINE,MIR,81,177,-85,172109778,172110040 +6 + chr2 172315287 172315408 chr2,172315270,172321297,+,L1HS,LINE,L1,128,6155,0,172315143,172321297 +1 + chr2 172323447 172323590 chr2,172323447,172323590,+,L2c,LINE,L2,2919,3063,-324,172320529,172323914 +6 + chr2 172323604 172323737 chr2,172323604,172323851,+,L2c,LINE,L2,3139,3386,-1,172320466,172323852 +5 + chr2 172423807 172423902 chr2,172423616,172423902,-,AluSx1,SINE,Alu,-24,288,1,172423592,172423902 +5 - chr2 172428545 172428562 chr2,172428545,172428562,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,172428545,172428562 -6 + chr2 172464322 172464355 chr2,172464322,172464355,+,(TTTGCT)n,Simple_repeat,Simple_repeat,1,34,0,172464322,172464355 -6 + chr2 172465147 172465304 chr2,172464992,172465304,-,MamRep137,DNA,TcMar-Tigger,0,510,201,172464992,172465504 +5 - chr2 172480840 172480860 chr2,172480798,172480860,-,L1MA3,LINE,L1,0,6305,6244,172480798,172487103 +5 - chr2 172509029 172509294 chr2,172509013,172509312,+,AluSq,SINE,Alu,1,298,-15,172509013,172509327 -5 + chr2 172509687 172509813 chr2,172509687,172509825,+,MIR,SINE,MIR,1,151,-117,172509687,172509942 -2 + chr2 172512334 172512392 chr2,172512302,172512392,+,LTR67B,LTR,ERVL,135,237,-383,172512168,172512775 -4 + chr2 172552615 172552681 chr2,172552528,172552681,-,MLT1A0,LTR,ERVL-MaLR,0,365,188,172552528,172552868 +5 - chr2 172552681 172552708 chr2,172552681,172553164,-,LTR8,LTR,ERV1,0,691,232,172552681,172553395 +2 - chr2 172555426 172555458 chr2,172555283,172555458,-,MIRb,SINE,MIR,0,268,74,172555283,172555531 +5 - chr2 172677141 172677206 chr2,172674914,172677206,+,Tigger1,DNA,TcMar-Tigger,109,2417,-1,172674806,172677207 -5 + chr2 172677324 172677494 chr2,172677324,172677494,-,HAL1,LINE,L1,-755,1752,1549,172676569,172679042 +6 - chr2 172677489 172677582 chr2,172677489,172677884,+,HAL1,LINE,L1,1813,2213,-294,172675677,172678178 -2 + chr2 172723466 172723971 chr2,172723466,172723971,+,L1MC4,LINE,L1,7488,8042,0,172715979,172723971 -6 + chr2 172724547 172724776 chr2,172724547,172724776,+,MLT1F1,LTR,ERVL-MaLR,334,569,0,172724214,172724776 -6 + chr2 172724810 172725564 chr2,172724810,172725564,+,L1ME3,LINE,L1,5316,6154,-8,172719495,172725572 -6 + chr2 172725577 172725810 chr2,172725577,172725810,+,L2a,LINE,L2,2876,3122,-304,172722702,172726114 -6 + chr2 172725826 172725893 chr2,172725826,172725893,-,LTR16D,LTR,ERVL,-13,638,571,172725813,172726463 +6 - chr2 172725892 172725910 chr2,172725892,172725910,-,LTR16D,LTR,ERVL,-188,463,447,172725704,172726356 +6 - chr2 172725910 172726360 chr2,172725910,172726360,-,MLT1C,LTR,ERVL-MaLR,0,467,1,172725910,172726360 +6 - chr2 172726360 172726734 chr2,172726360,172726734,-,LTR16D,LTR,ERVL,-205,446,36,172726155,172726769 +6 - chr2 172726741 172727024 chr2,172726741,172727024,+,L2a,LINE,L2,3116,3410,-16,172723626,172727040 -6 + chr2 173166446 173166636 chr2,173166426,173166636,-,Charlie29a,DNA,hAT-Charlie,-1,718,490,173166425,173167125 +5 - chr2 173192941 173193021 chr2,173192881,173193021,-,MER58C,DNA,hAT-Charlie,-9,206,72,173192872,173193092 +4 - chr2 173207583 173207658 chr2,173207583,173207678,+,MIRc,SINE,MIR,60,156,-112,173207524,173207790 -1 + chr2 173212669 173212791 chr2,173212516,173212825,+,AluJb,SINE,Alu,1,310,-2,173212516,173212827 -3 + chr2 173281682 173281737 chr2,173281660,173281737,-,AluJb,SINE,Alu,-1,311,236,173281659,173281972 +4 - chr2 173281737 173282036 chr2,173281737,173283149,-,LTR12C,LTR,ERV1,0,1579,2,173281737,173283150 +1 - chr2 173880936 173881061 chr2,173880936,173881084,+,FAM,SINE,Alu,34,179,-6,173880903,173881090 -2 + chr2 173897975 173898029 chr2,173897377,173898485,-,L2,LINE,L2,-368,3051,1849,173897009,173900333 +3 - chr2 173899391 173899428 chr2,173899267,173899553,+,AluSc8,SINE,Alu,1,299,-12,173899267,173899565 -1 + chr2 173968351 173968572 chr2,173968340,173968572,-,AluSq4,SINE,Alu,-67,244,14,173968273,173968585 -1 - chr2 173969114 173969188 chr2,173969114,173969188,+,MADE2,DNA,TcMar-Mariner,7,80,0,173969108,173969188 +6 + chr2 174011863 174012044 chr2,174011863,174012044,-,MIR,SINE,MIR,-65,197,13,174011798,174012056 +6 - chr2 174026906 174027163 chr2,174026906,174027283,+,L1MC5a,LINE,L1,2334,2731,-46,174024573,174027329 +5 + chr2 174328543 174328588 chr2,174328543,174328588,+,G-rich,Low_complexity,Low_complexity,1,46,0,174328543,174328588 +6 + chr2 174330510 174330535 chr2,174330510,174330535,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,174330510,174330535 +6 + chr2 174336419 174336467 chr2,174336419,174336467,+,(CGG)n,Simple_repeat,Simple_repeat,1,48,0,174336419,174336467 -6 + chr2 174336897 174336959 chr2,174336897,174336959,+,(CGC)n,Simple_repeat,Simple_repeat,1,62,0,174336897,174336959 -6 + chr2 174337446 174337494 chr2,174337446,174337494,+,(GGC)n,Simple_repeat,Simple_repeat,1,48,0,174337446,174337494 -6 + chr2 174487546 174487633 chr2,174487546,174487633,+,MIR,SINE,MIR,5,93,-169,174487542,174487802 +6 + chr2 174488035 174488351 chr2,174487831,174488351,+,LTR26C,LTR,ERV1,1,529,-10,174487831,174488361 +5 + chr2 174547163 174547248 chr2,174547163,174547404,+,LTR78,LTR,ERV1,697,935,-369,174546467,174547773 +1 + chr2 174547369 174547404 chr2,174547163,174547404,+,LTR78,LTR,ERV1,697,935,-369,174546467,174547773 +1 + chr2 174547413 174547477 chr2,174547413,174549111,-,LTR12C,LTR,ERV1,0,1579,3,174547413,174549113 -4 - chr2 174575274 174575367 chr2,174575274,174575367,+,(CCA)n,Simple_repeat,Simple_repeat,1,93,0,174575274,174575367 +6 + chr2 174655506 174655872 chr2,174655506,174655872,+,L2b,LINE,L2,2941,3323,-52,174652566,174655924 +6 + chr2 174655898 174656285 chr2,174655898,174656334,+,MLT1H2,LTR,ERVL-MaLR,1,484,-5,174655898,174656339 +4 + chr2 174665559 174665689 chr2,174665559,174665792,+,MER112,DNA,hAT-Charlie,2,257,-4,174665558,174665796 +5 + chr2 174774406 174774827 chr2,174774406,174774852,+,LTR54,LTR,ERV1,1,510,0,174774406,174774852 +5 + chr2 174783341 174783736 chr2,174783341,174783736,-,MLT1B,LTR,ERVL-MaLR,0,390,1,174783341,174783736 +6 - chr2 174784023 174784258 chr2,174784023,174784258,+,HAL1b,LINE,L1,2198,2417,-4,174781826,174784262 -6 + chr2 174784831 174784869 chr2,174784831,174785513,+,L1ME3B,LINE,L1,5495,6218,-24,174779337,174785537 -2 + chr2 175257250 175257558 chr2,175256249,175257558,-,LTR12C,LTR,ERV1,-145,1434,3,175256104,175257560 -1 - chr2 175442954 175442968 chr2,175442954,175443014,+,L3,LINE,CR1,2079,2138,-1961,175440876,175444975 +5 + chr2 175897336 175897486 chr2,175897278,175898045,-,MER21A,LTR,ERVL,-36,895,142,175897242,175898186 -1 - chr2 175905445 175905502 chr2,175905344,175905654,+,MARNA,DNA,TcMar-Mariner,183,497,-89,175905162,175905743 -1 + chr2 176136671 176136712 chr2,176136671,176136712,+,(CCGGC)n,Simple_repeat,Simple_repeat,1,41,0,176136671,176136712 -6 + chr2 176165660 176165697 chr2,176165660,176165697,+,GA-rich,Low_complexity,Low_complexity,1,37,0,176165660,176165697 -6 + chr2 176174819 176174861 chr2,176174819,176174861,+,G-rich,Low_complexity,Low_complexity,1,43,0,176174819,176174861 -6 + chr2 176191022 176191322 chr2,176191022,176191322,-,AluSx,SINE,Alu,-16,296,1,176191006,176191322 +6 - chr2 176506245 176506291 chr2,176506134,176506291,+,MamRep564,Unknown,Unknown,64,227,-130,176506071,176506421 -5 + chr2 176506414 176506536 chr2,176506414,176506603,+,MIR3,SINE,MIR,21,200,-8,176506394,176506611 -2 + chr2 176611454 176611553 chr2,176611454,176611553,-,L1MB8,LINE,L1,-11,6167,6072,176611443,176617624 +6 - chr2 176629877 176630005 chr2,176629877,176630005,+,MER131,DNA?,DNA?,2,127,-88,176629876,176630093 -6 + chr2 176630231 176630432 chr2,176630231,176630457,+,AluJr,SINE,Alu,85,300,-12,176630147,176630469 -2 + chr2 176633404 176633714 chr2,176633404,176633714,-,AluYa5,SINE,Alu,-1,310,1,176633403,176633714 +6 - chr2 176637646 176637708 chr2,176637646,176637708,+,G-rich,Low_complexity,Low_complexity,1,66,0,176637646,176637708 -6 + chr2 176655464 176655520 chr2,176655405,176655557,-,MIR,SINE,MIR,-67,201,35,176655338,176655591 -3 - chr2 176753402 176753582 chr2,176753402,176753582,-,MIRc,SINE,MIR,-39,229,31,176753363,176753612 +2 - chr2 176757320 176757486 chr2,176757133,176757486,-,Tigger2,DNA,TcMar-Tigger,-62,2656,2273,176757071,176759758 +4 - chr2 176757476 176757545 chr2,176757476,176757545,-,Tigger2b_Pri,DNA,TcMar-Tigger,-999,69,1,176756477,176757545 +6 - chr2 176757632 176758199 chr2,176757632,176758199,+,L2b,LINE,L2,2743,3323,-52,176754890,176758251 -6 + chr2 176758227 176758416 chr2,176758227,176758416,-,L2a,LINE,L2,-24,3402,3185,176758203,176761600 +6 - chr2 176758485 176758643 chr2,176758485,176758643,+,MIRb,SINE,MIR,37,204,-64,176758449,176758707 -6 + chr2 176759375 176759507 chr2,176759375,176759507,+,MIRb,SINE,MIR,91,222,-46,176759285,176759553 -6 + chr2 176759891 176760262 chr2,176759891,176760262,-,MamRep4096,DNA,hAT-Tip100,-32,394,12,176759859,176760273 +6 - chr2 176761065 176761218 chr2,176761065,176761218,-,MIRb,SINE,MIR,-9,259,101,176761056,176761318 +6 - chr2 176782816 176782919 chr2,176782602,176783006,+,MSTB1,LTR,ERVL-MaLR,1,432,0,176782602,176783006 -3 + chr2 176822030 176822110 chr2,176821916,176822110,+,MIRb,SINE,MIR,77,268,0,176821840,176822110 +1 + chr2 176822299 176822545 chr2,176822299,176822545,-,MIR,SINE,MIR,-2,260,2,176822297,176822546 -6 - chr2 176823361 176823653 chr2,176823361,176823713,+,MLT1I,LTR,ERVL-MaLR,46,411,0,176823316,176823713 +5 + chr2 176990508 176990523 chr2,176990414,176990523,-,L3,LINE,CR1,-187,3912,3799,176990227,176994321 +5 - chr2 176992826 176992966 chr2,176992772,176992997,+,AluSx3,SINE,Alu,85,309,-2,176992688,176992999 -3 + chr2 177097023 177097169 chr2,177096968,177097338,-,MLT1B,LTR,ERVL-MaLR,-18,372,1,177096950,177097338 +3 - chr2 177212581 177212633 chr2,177212581,177212633,+,(CGCCCGC)n,Simple_repeat,Simple_repeat,1,52,0,177212581,177212633 -6 + chr2 177264359 177264380 chr2,177264339,177264380,+,(CCCTGC)n,Simple_repeat,Simple_repeat,1,44,0,177264339,177264380 +1 + chr2 177264624 177264698 chr2,177264624,177264698,+,(CGG)n,Simple_repeat,Simple_repeat,1,77,0,177264624,177264698 +6 + chr2 177284965 177285437 chr2,177284965,177285437,+,MamGypLTR1c,LTR,Gypsy,39,530,-273,177284927,177285710 -6 + chr2 177285663 177285735 chr2,177285663,177285735,+,MamGypLTR1c,LTR,Gypsy,712,787,-16,177284952,177285751 -6 + chr2 177285765 177285834 chr2,177285765,177285834,+,MIRc,SINE,MIR,3,84,-184,177285763,177286018 -6 + chr2 177285834 177286757 chr2,177285834,177286757,+,MER49,LTR,ERV1,1,923,0,177285834,177286757 -6 + chr2 177286757 177286882 chr2,177286757,177286882,+,MIRc,SINE,MIR,85,216,-52,177286673,177286934 -6 + chr2 177286985 177287270 chr2,177286985,177287270,+,MLT1J2,LTR,ERVL-MaLR,1,318,-130,177286985,177287400 -6 + chr2 177300600 177300754 chr2,177300211,177300754,-,L1M1,LINE,L1,-3387,4178,3622,177296824,177304375 -1 - chr2 177300763 177300816 chr2,177300763,177300851,-,FLAM_C,SINE,Alu,-2,131,55,177300761,177300905 -4 - chr2 177301780 177301867 chr2,177301738,177301867,-,AluJr,SINE,Alu,-179,133,1,177301559,177301867 -2 - chr2 177306373 177306539 chr2,177306181,177306539,-,L1ME4a,LINE,L1,-165,5959,5584,177306016,177312122 -1 - chr2 177310367 177310572 chr2,177310367,177310672,+,AluSg,SINE,Alu,1,305,-5,177310367,177310677 +5 + chr2 177310880 177311035 chr2,177310880,177311218,-,THE1D,LTR,ERVL-MaLR,0,381,47,177310880,177311264 +2 - chr2 177311233 177311328 chr2,177311218,177311520,+,AluSx,SINE,Alu,1,300,-12,177311218,177311532 -3 + chr2 177314867 177314918 chr2,177314867,177315028,+,MER5A1,DNA,hAT-Charlie,2,161,-5,177314866,177315033 -1 + chr2 177321867 177321958 chr2,177321867,177321958,-,MER115,DNA,hAT-Tip100,0,693,604,177321867,177322561 +6 - chr2 177321958 177322237 chr2,177321958,177322265,+,AluY,SINE,Alu,1,306,-5,177321958,177322270 -2 + chr2 177331572 177331640 chr2,177331385,177331640,-,AluSz,SINE,Alu,-58,254,1,177331327,177331640 +4 - chr2 177334393 177334429 chr2,177334311,177334429,+,L2b,LINE,L2,3256,3369,-6,177331056,177334435 -4 + chr2 177338388 177338476 chr2,177338015,177338476,+,ERVL-E-int,LTR,ERVL,1251,1817,-3837,177336765,177342313 -5 + chr2 177342059 177342367 chr2,177342059,177342526,+,L2,LINE,L2,2475,2964,-455,177339585,177342981 -1 + chr2 178011907 178011939 chr2,178011707,178011939,-,MIR,SINE,MIR,-19,243,1,178011688,178011939 +4 - chr2 178401453 178401498 chr2,178401453,178401498,+,(CTTATTC)n,Simple_repeat,Simple_repeat,1,46,0,178401453,178401498 +6 + chr2 178401696 178401843 chr2,178401696,178401843,-,MER5A,DNA,hAT-Charlie,-28,161,4,178401668,178401846 -6 - chr2 178401959 178402140 chr2,178401959,178402140,+,AluJb,SINE,Alu,136,312,0,178401824,178402140 +6 + chr2 178418511 178418625 chr2,178418314,178418625,-,AluJr,SINE,Alu,-12,300,1,178418302,178418625 -2 - chr2 178418655 178418765 chr2,178418655,178418765,-,L1MEa,LINE,L1,-5958,112,3,178412697,178418767 -6 - chr2 178418767 178418915 chr2,178418767,178418915,-,MIR,SINE,MIR,-113,149,4,178418654,178418918 -6 - chr2 178418941 178419010 chr2,178418941,178419010,+,MIRb,SINE,MIR,200,268,0,178418742,178419010 +6 + chr2 178426366 178426703 chr2,178424238,178427048,-,L1M3f,LINE,L1,-3467,4095,1240,178420771,178428287 -3 - chr2 178431047 178431312 chr2,178431010,178431312,-,AluJr,SINE,Alu,0,312,1,178431010,178431312 -2 - chr2 178433382 178433646 chr2,178433154,178433646,-,L1MB5,LINE,L1,-313,5861,5371,178432841,178439016 -5 - chr2 178433646 178433787 chr2,178433646,178433787,-,FLAM_C,SINE,Alu,-7,136,1,178433639,178433787 -6 - chr2 178433787 178433817 chr2,178433787,178433817,-,L1MB5,LINE,L1,-804,5370,5340,178432983,178439156 -6 - chr2 178433992 178434091 chr2,178433992,178434093,+,L2c,LINE,L2,3268,3384,-3,178430725,178434096 +5 + chr2 178438867 178438982 chr2,178438681,178438982,-,AluY,SINE,Alu,-16,295,1,178438665,178438982 -2 - chr2 178438982 178439021 chr2,178438982,178439021,-,L1M5,LINE,L1,-1536,4610,4578,178437446,178443598 -6 - chr2 178439261 178439434 chr2,178439261,178439434,-,HAL1ME,LINE,L1,-7,2458,2276,178439254,178441709 -6 - chr2 178439431 178439675 chr2,178439431,178439675,-,L1PB,LINE,L1,-1809,4337,4081,178437622,178443755 -6 - chr2 178439737 178440158 chr2,178439737,178440158,-,L1M5,LINE,L1,-2189,3957,3514,178437548,178443671 -6 - chr2 178521211 178521301 chr2,178521211,178521601,+,MLT1B,LTR,ERVL-MaLR,8,390,0,178521204,178521601 +4 + chr2 178521798 178522164 chr2,178521798,178522164,-,THE1B,LTR,ERVL-MaLR,-1,363,1,178521797,178522164 -6 - chr2 178522827 178522860 chr2,178522693,178522894,-,MIR,SINE,MIR,0,262,52,178522693,178522945 -1 - chr2 178523565 178523636 chr2,178523565,178523643,-,MIR3,SINE,MIR,-7,201,127,178523558,178523769 -4 - chr2 178523904 178524116 chr2,178523761,178524116,+,LTR16A1,LTR,ERVL,112,455,-1,178523650,178524117 +1 + chr2 178528415 178528454 chr2,178528415,178528454,+,A-rich,Low_complexity,Low_complexity,1,42,0,178528415,178528454 +6 + chr2 178541125 178541261 chr2,178541065,178541261,+,L1ME1,LINE,L1,5969,6169,-10,178535097,178541271 +1 + chr2 178541784 178541856 chr2,178541784,178541856,-,L1PA17,LINE,L1,-13,6153,6082,178541771,178547937 -5 - chr2 178555466 178555529 chr2,178555466,178555529,+,(TTTCCT)n,Simple_repeat,Simple_repeat,1,66,0,178555466,178555529 +6 + chr2 178555740 178555847 chr2,178555740,178555847,+,MamRTE1,LINE,RTE-BovB,2080,2171,-1641,178553661,178557488 +6 + chr2 178555910 178556092 chr2,178555910,178556092,+,MIRb,SINE,MIR,9,210,-58,178555902,178556150 +6 + chr2 178556147 178556431 chr2,178556147,178556431,+,AluSx,SINE,Alu,1,283,-29,178556147,178556460 +6 + chr2 178556431 178556458 chr2,178556431,178556458,+,(AAAC)n,Simple_repeat,Simple_repeat,1,27,0,178556431,178556458 +6 + chr2 178556458 178556476 chr2,178556458,178556476,+,AluSx,SINE,Alu,284,301,-11,178556175,178556487 +6 + chr2 178582631 178582706 chr2,178582631,178582794,+,MIR3,SINE,MIR,20,187,-21,178582612,178582815 +5 + chr2 178724707 178724759 chr2,178724707,178724759,+,(TTTTTT)n,Simple_repeat,Simple_repeat,1,52,0,178724707,178724759 +6 + chr2 178725187 178725337 chr2,178725187,178725337,-,L3b,LINE,CR1,-10,5222,5047,178725177,178730383 -6 - chr2 178726179 178726303 chr2,178726179,178726303,-,MIR1_Amn,SINE,MIR,-132,136,6,178726047,178726308 -6 - chr2 178744779 178744826 chr2,178744658,178744826,+,Kanga11a,DNA,TcMar-Tc2,1,166,-15,178744658,178744841 +1 + chr2 178772947 178773042 chr2,178772685,178773042,-,L2c,LINE,L2,-8,3379,3002,178772677,178776043 -1 - chr2 178777389 178777418 chr2,178777389,178777418,+,(TTTAT)n,Simple_repeat,Simple_repeat,1,29,0,178777389,178777418 +6 + chr2 178778080 178778307 chr2,178778080,178778307,+,L2,LINE,L2,2416,2641,-778,178775665,178779085 +6 + chr2 178778448 178778646 chr2,178778448,178778646,+,MIRb,SINE,MIR,39,226,-4,178778410,178778650 +6 + chr2 178779923 178779963 chr2,178779923,178779969,+,A-rich,Low_complexity,Low_complexity,1,47,0,178779923,178779969 +5 + chr2 179273868 179274064 chr2,179273868,179274064,-,L2c,LINE,L2,-222,3165,2960,179273646,179277023 -6 - chr2 179285536 179285607 chr2,179285536,179285607,+,AluSz6,SINE,Alu,233,303,-9,179285304,179285616 +6 + chr2 179285623 179285707 chr2,179285623,179285945,-,L1ME4a,LINE,L1,-181,5943,5620,179285442,179291564 -5 - chr2 180571712 180571831 chr2,180571484,180572210,+,L1MB7,LINE,L1,5447,6168,-16,180566038,180572226 -5 + chr2 180600764 180600907 chr2,180600764,180601029,+,MIR,SINE,MIR,3,261,-1,180600762,180601030 -2 + chr2 180692230 180692425 chr2,180691204,180692425,+,LTR12C,LTR,ERV1,3,1579,0,180691202,180692425 -4 + chr2 180801381 180801533 chr2,180801381,180801940,+,HAL1,LINE,L1,1893,2497,-10,180799489,180801950 +5 + chr2 181076154 181076192 chr2,181076154,181076192,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,181076154,181076192 -6 + chr2 181101932 181102032 chr2,181101701,181102298,+,L1MD1,LINE,L1,5610,6232,-10,181096092,181102308 +1 + chr2 181104001 181104057 chr2,181103911,181104319,-,L1ME4b,LINE,L1,0,892,397,181103911,181104715 +3 - chr2 181111992 181112029 chr2,181111992,181112029,+,GA-rich,Low_complexity,Low_complexity,1,38,0,181111992,181112029 +6 + chr2 181226471 181226535 chr2,181226347,181226786,+,Tigger2,DNA,TcMar-Tigger,2273,2718,0,181224075,181226786 +3 + chr2 181238251 181238450 chr2,181237855,181238720,+,L1MEc,LINE,L1,36,1000,-5415,181237820,181244135 +3 + chr2 181262829 181262977 chr2,181262739,181263164,+,MLT1G,LTR,ERVL-MaLR,124,591,0,181262616,181263164 +3 + chr2 181322661 181322730 chr2,181322399,181322896,-,L1MEd,LINE,L1,-3639,2680,2155,181318760,181325050 -3 - chr2 181339672 181339776 chr2,181339613,181340747,-,L1ME1,LINE,L1,-10,6169,5016,181339603,181345762 -5 - chr2 181342158 181342311 chr2,181342049,181342389,+,MLT1H,LTR,ERVL-MaLR,22,364,-185,181342028,181342574 +5 + chr2 181354208 181354221 chr2,181354171,181354221,+,L2b,LINE,L2,2871,2920,-499,181351301,181354720 +2 + chr2 181354221 181354343 chr2,181354221,181354397,+,MIR,SINE,MIR,4,199,-63,181354218,181354460 +4 + chr2 181362687 181362743 chr2,181362205,181362743,-,MER44B,DNA,TcMar-Tigger,0,550,1,181362205,181362743 -2 - chr2 181398660 181398691 chr2,181398660,181398691,+,(A)n,Simple_repeat,Simple_repeat,1,31,0,181398660,181398691 +6 + chr2 181399064 181399544 chr2,181399064,181399544,-,MLT1F,LTR,ERVL-MaLR,-2,546,3,181399062,181399546 -6 - chr2 181425456 181425480 chr2,181425092,181425480,+,LTR33,LTR,ERVL,20,445,-70,181425073,181425550 -4 + chr2 181425480 181425749 chr2,181425480,181426170,+,MER50,LTR,ERV1,1,722,-12,181425480,181426182 -1 + chr2 181685696 181685707 chr2,181685696,181685725,+,(CAAA)n,Simple_repeat,Simple_repeat,1,30,0,181685696,181685725 +5 + chr2 181690380 181690738 chr2,181690369,181690738,+,ERVL-B4-int,LTR,ERVL,1727,2116,-3598,181688643,181694336 -5 + chr2 181690835 181690901 chr2,181690835,181690901,+,ERVL-B4-int,LTR,ERVL,2302,2370,-3387,181688534,181694288 -6 + chr2 181690909 181691206 chr2,181690909,181691365,+,MLT1J,LTR,ERVL-MaLR,1,505,-7,181690909,181691372 -2 + chr2 181693258 181693415 chr2,181693236,181693421,+,L2c,LINE,L2,2101,2288,-1131,181691136,181694552 -1 + chr2 181887921 181888147 chr2,181887921,181888147,+,MER103C,DNA,hAT-Charlie,30,244,-53,181887892,181888200 -6 + chr2 181888651 181888856 chr2,181888651,181888856,-,MIRb,SINE,MIR,-45,223,9,181888606,181888864 +6 - chr2 181888931 181889232 chr2,181888931,181889232,-,AluSp,SINE,Alu,-12,301,1,181888919,181889232 +6 - chr2 181890357 181890439 chr2,181890357,181890439,-,MamTip2,DNA,hAT-Tip100,-111,194,114,181890246,181890552 +6 - chr2 181891557 181891580 chr2,181891557,181891580,+,(GGA)n,Simple_repeat,Simple_repeat,1,24,0,181891557,181891580 -6 + chr2 181891633 181891663 chr2,181891633,181891693,+,(GCCGC)n,Simple_repeat,Simple_repeat,1,62,0,181891633,181891693 -1 + chr2 183107492 183107671 chr2,183107453,183107671,-,Tigger2a,DNA,TcMar-Tigger,-225,209,1,183107228,183107671 +4 - chr2 185729329 185729409 chr2,185728836,185729409,-,LTR80B,LTR,ERVL,0,584,1,185728836,185729409 +4 - chr2 185738186 185738253 chr2,185738148,185738265,+,L2b,LINE,L2,3260,3373,-2,185734889,185738267 -3 + chr2 186083154 186083233 chr2,186083041,186084040,+,L2,LINE,L2,924,2005,-1414,186082118,186085454 -1 + chr2 186354570 186354642 chr2,186354524,186354642,+,L1ME4a,LINE,L1,5883,6007,-371,186348642,186355013 -5 + chr2 186354643 186354922 chr2,186354643,186354922,+,L1ME4a,LINE,L1,6048,6372,-6,186348596,186354928 -6 + chr2 186355628 186355782 chr2,186355628,186355782,-,MIR3,SINE,MIR,-28,180,24,186355600,186355805 +6 - chr2 186356443 186356482 chr2,186356443,186356482,+,A-rich,Low_complexity,Low_complexity,1,40,0,186356443,186356482 -6 + chr2 186356656 186356773 chr2,186356656,186356843,+,HAL1b,LINE,L1,1860,2068,-353,186354797,186357196 -1 + chr2 187191835 187191931 chr2,187191616,187192013,+,MSTA,LTR,ERVL-MaLR,1,428,0,187191616,187192013 +3 + chr2 187527030 187527101 chr2,187527030,187527101,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,71,0,187527030,187527101 +6 + chr2 188035596 188035711 chr2,188033932,188036618,+,HERVH-int,LTR,ERV1,16,2992,-4721,188033917,188041339 -3 + chr2 188165754 188165894 chr2,188165489,188165894,-,HERVH-int,LTR,ERV1,-7267,446,1,188158222,188165894 +4 - chr2 188165894 188165908 chr2,188165894,188165949,-,LTR7,LTR,ERV1,0,450,396,188165894,188166344 +2 - chr2 188287483 188287691 chr2,188287483,188287806,+,AluY,SINE,Alu,1,309,-2,188287483,188287808 -1 + chr2 188603660 188603757 chr2,188603633,188603791,+,AluSp,SINE,Alu,132,289,-24,188603502,188603815 -3 + chr2 188647204 188647277 chr2,188647161,188647297,+,MIRc,SINE,MIR,18,157,-111,188647144,188647408 -3 + chr2 188839286 188839445 chr2,188839205,188839612,-,MSTD,LTR,ERVL-MaLR,0,396,1,188839205,188839612 +1 - chr2 189095063 189095103 chr2,189094908,189095103,+,MER20,DNA,hAT-Charlie,4,219,0,189094905,189095103 +1 + chr2 189762930 189762992 chr2,189762930,189763011,-,MIRb,SINE,MIR,-151,117,36,189762779,189763046 -4 - chr2 189763934 189764119 chr2,189763934,189764119,-,MIR,SINE,MIR,-28,234,12,189763906,189764130 +6 - chr2 189764855 189765130 chr2,189764837,189765130,-,AluSg,SINE,Alu,-16,294,1,189764821,189765130 -2 - chr2 189765188 189765323 chr2,189765188,189765323,-,L2c,LINE,L2,-5,3382,3250,189765183,189768572 -5 - chr2 189765536 189765556 chr2,189765536,189765769,-,MamRep605,LTR?,LTR?,-231,618,376,189765305,189766144 -5 - chr2 190454333 190454521 chr2,190454333,190454746,+,MLT1A,LTR,ERVL-MaLR,3,370,-4,190454331,190454750 -1 + chr2 190534905 190534936 chr2,190534905,190534936,+,(CGGCCT)n,Simple_repeat,Simple_repeat,1,31,0,190534905,190534936 +6 + chr2 190568073 190568102 chr2,190567946,190568540,+,HAL1,LINE,L1,1569,2163,-344,190566378,190568884 +5 + chr2 190708634 190708716 chr2,190708550,190708916,-,THE1B,LTR,ERVL-MaLR,0,364,1,190708550,190708916 +1 - chr2 190880872 190880920 chr2,190880872,190880920,+,(GCA)n,Simple_repeat,Simple_repeat,1,48,0,190880872,190880920 -6 + chr2 191017954 191018059 chr2,191017939,191018059,-,AluSx3,SINE,Alu,-17,294,175,191017922,191018233 -1 - chr2 191018670 191018804 chr2,191018661,191018804,+,MLT1H,LTR,ERVL-MaLR,160,312,-237,191018502,191019041 +2 + chr2 191018824 191018989 chr2,191018824,191018989,+,MLT1H,LTR,ERVL-MaLR,387,547,-2,191018438,191018991 +6 + chr2 191021526 191021541 chr2,191021397,191021541,-,MER45A,DNA,hAT-Tip100,0,178,38,191021397,191021578 -1 - chr2 191154118 191154510 chr2,191154067,191154510,-,Charlie1a,DNA,hAT-Charlie,-988,467,1,191153079,191154510 +5 - chr2 191154949 191155134 chr2,191154949,191155134,+,MIRc,SINE,MIR,12,210,-58,191154938,191155192 -6 + chr2 191155865 191156070 chr2,191155865,191156082,-,MIR,SINE,MIR,-34,228,3,191155831,191156084 +1 - chr2 191229165 191229254 chr2,191228927,191229354,+,MamRTE1,LINE,RTE-BovB,3270,3718,-94,191225658,191229448 -5 + chr2 191243620 191244013 chr2,191243554,191244013,-,MLT1G3,LTR,ERVL-MaLR,0,579,84,191243554,191244096 +4 - chr2 191244047 191244073 chr2,191244047,191244161,+,MIR,SINE,MIR,107,241,-21,191243941,191244182 -2 + chr2 191793425 191793459 chr2,191793084,191793541,-,MLT1D,LTR,ERVL-MaLR,0,505,1,191793084,191793541 -1 - chr2 191922546 191922999 chr2,191921476,191922999,+,LTR12C,LTR,ERV1,3,1579,0,191921474,191922999 +1 + chr2 192021912 192021972 chr2,192021857,192021979,-,L1M6,LINE,L1,-4784,1712,1594,192017073,192023572 -1 - chr2 192027872 192027953 chr2,192027654,192027961,+,MER45B,DNA,hAT-Tip100,1,322,-718,192027654,192028679 +3 + chr2 192028570 192029043 chr2,192028506,192029043,+,MER45B,DNA,hAT-Tip100,470,1024,-16,192028037,192029059 +1 + chr2 192029208 192029398 chr2,192029208,192029469,+,MLT1F2,LTR,ERVL-MaLR,296,560,0,192028913,192029469 +4 + chr2 192031332 192031400 chr2,192031015,192031400,+,L2a,LINE,L2,3049,3426,0,192027967,192031400 +2 + chr2 192031510 192031704 chr2,192031510,192031704,-,MIRb,SINE,MIR,-4,264,70,192031506,192031773 -6 - chr2 192032526 192032638 chr2,192032526,192032652,+,MIR3,SINE,MIR,83,205,-3,192032444,192032655 +4 + chr2 192036132 192036235 chr2,192036113,192036235,-,L2b,LINE,L2,0,3375,3244,192036113,192039478 -1 - chr2 192036685 192037107 chr2,192036568,192037107,+,L2a,LINE,L2,2842,3411,-15,192033727,192037122 +5 + chr2 192043657 192044183 chr2,192042434,192046098,+,ERVL-B4-int,LTR,ERVL,861,4606,-1108,192041574,192047206 +5 + chr2 192645536 192645588 chr2,192645536,192645588,+,MIRc,SINE,MIR,109,154,-114,192645428,192645702 +6 + chr2 192749845 192749877 chr2,192749752,192749877,-,MER119,DNA,hAT-Charlie,-451,132,1,192749301,192749877 -1 - chr2 192753724 192753845 chr2,192753690,192754001,-,AluSx3,SINE,Alu,0,311,1,192753690,192754001 -3 - chr2 193898367 193898655 chr2,193898219,193898655,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,193898219,193898655 +1 + chr2 193898898 193898948 chr2,193898898,193898948,+,(TTTCTC)n,Simple_repeat,Simple_repeat,1,53,0,193898898,193898948 +6 + chr2 194368841 194369065 chr2,194368668,194369065,+,Tigger6a,DNA,TcMar-Tigger,138,575,-508,194368531,194369573 +2 + chr2 194374221 194374262 chr2,194374221,194374387,-,L1M6,LINE,L1,-5796,700,526,194368425,194374912 -4 - chr2 194386161 194386506 chr2,194385998,194386946,+,LTR1D,LTR,ERV1,12,975,0,194385987,194386946 +5 + chr2 194390840 194390927 chr2,194390840,194394862,+,L1PA3,LINE,L1,2125,6155,0,194388716,194394862 +5 + chr2 194419308 194419320 chr2,194419302,194419320,-,L2a,LINE,L2,-339,3087,3062,194418963,194422381 -2 - chr2 194419350 194419495 chr2,194419350,194419495,+,MSTD,LTR,ERVL-MaLR,227,407,-50,194419124,194419545 +6 + chr2 194419507 194419645 chr2,194419507,194420162,-,L2a,LINE,L2,-342,3077,2410,194419165,194422571 -5 - chr2 194736025 194736326 chr2,194735919,194736468,-,ERVL-E-int,LTR,ERVL,-1517,4150,3585,194734402,194740052 -3 - chr2 194744556 194744668 chr2,194744556,194744668,+,MIRb,SINE,MIR,84,194,-74,194744473,194744742 +6 + chr2 194744684 194744698 chr2,194744684,194744782,+,L2b,LINE,L2,3261,3363,-12,194741424,194744794 +4 + chr2 194759572 194759704 chr2,194759572,194759704,-,MER5B,DNA,hAT-Charlie,-32,146,13,194759540,194759716 -6 - chr2 194759716 194759830 chr2,194759716,194759830,-,MER5A1,DNA,hAT-Charlie,-5,161,49,194759711,194759878 -6 - chr2 195448532 195448612 chr2,195448385,195448695,+,THE1D,LTR,ERVL-MaLR,55,381,0,195448331,195448695 +1 + chr2 195451778 195451796 chr2,195451485,195451796,-,AluSc,SINE,Alu,-1,308,1,195451484,195451796 +5 - chr2 195451831 195451921 chr2,195451831,195451976,+,MER5A1,DNA,hAT-Charlie,3,148,-18,195451829,195451994 -2 + chr2 195455510 195455562 chr2,195455478,195455562,+,L2,LINE,L2,2731,2826,-593,195452748,195456155 +2 + chr2 195455589 195455641 chr2,195455589,195455774,+,L3,LINE,CR1,3845,4025,-74,195451745,195455848 +4 + chr2 195458076 195458263 chr2,195457911,195458326,-,MLT1H,LTR,ERVL-MaLR,-6,543,2,195457905,195458327 -3 - chr2 195478654 195478731 chr2,195478654,195478731,-,MIR3,SINE,MIR,-10,198,121,195478644,195478851 -6 - chr2 195478731 195478925 chr2,195478731,195479023,+,AluY,SINE,Alu,3,292,-19,195478729,195479042 +5 + chr2 195515437 195515497 chr2,195515370,195515497,-,MLT1E2,LTR,ERVL-MaLR,-8,619,499,195515362,195515995 +4 - chr2 195515497 195515699 chr2,195515497,195516972,+,LTR12C,LTR,ERV1,3,1579,0,195515495,195516972 -1 + chr2 195538041 195538161 chr2,195537913,195538161,-,MIRb,SINE,MIR,-7,261,9,195537906,195538169 -2 - chr2 195538297 195538681 chr2,195538297,195538999,+,L1MEc,LINE,L1,37,745,-5655,195538261,195544654 +5 + chr2 195572651 195572709 chr2,195572387,195572709,-,MLT1M,LTR,ERVL-MaLR,-18,577,266,195572369,195572974 +4 - chr2 195572709 195572970 chr2,195572709,195573020,+,AluJo,SINE,Alu,1,310,-2,195572709,195573022 -1 + chr2 196151263 196151508 chr2,196151250,196151530,-,AluYf1,SINE,Alu,-18,293,1,196151232,196151530 -1 - chr2 196153063 196153084 chr2,196152945,196153084,-,FLAM_C,SINE,Alu,-7,136,1,196152938,196153084 -2 - chr2 196153084 196153828 chr2,196153084,196153828,+,L1MC5a,LINE,L1,849,1667,-1110,196152236,196154938 +6 + chr2 196153921 196153955 chr2,196153921,196153955,+,L1MC4,LINE,L1,7210,7236,-646,196146712,196154601 +6 + chr2 196153955 196154226 chr2,196153955,196154226,+,AluSc5,SINE,Alu,1,273,-36,196153955,196154262 +6 + chr2 196154226 196154262 chr2,196154226,196154262,+,(CAA)n,Simple_repeat,Simple_repeat,1,36,0,196154226,196154262 +6 + chr2 196154262 196154442 chr2,196154262,196154442,+,L1MC4,LINE,L1,7237,7451,-591,196147026,196155033 +6 + chr2 196154448 196154612 chr2,196154448,196154612,+,L1MC4,LINE,L1,7882,8039,-3,196146567,196154615 +6 + chr2 196260433 196260528 chr2,196260400,196260528,-,L2b,LINE,L2,-2,3373,3240,196260398,196263767 -1 - chr2 196263836 196263897 chr2,196263836,196263897,+,MIRb,SINE,MIR,191,251,-17,196263646,196263914 +6 + chr2 196264068 196264168 chr2,196264068,196264168,-,L4_C_Mam,LINE,RTE-X,-1341,3797,3684,196262727,196267851 -6 - chr2 196831975 196832033 chr2,196831577,196832033,-,LTR71A,LTR,ERV1,0,459,2,196831577,196832034 +5 - chr2 196832073 196832190 chr2,196832073,196832395,+,AluY,SINE,Alu,2,308,-3,196832072,196832398 -1 + chr2 197198011 197198089 chr2,197198011,197198416,-,L2c,LINE,L2,-236,3151,2716,197197775,197201131 -4 - chr2 197299482 197299535 chr2,197299311,197299830,+,L1PB1,LINE,L1,5620,6146,-5,197293692,197299835 -3 + chr2 197300963 197301085 chr2,197300752,197301085,-,AluSq2,SINE,Alu,-2,311,2,197300750,197301086 +4 - chr2 197301085 197301165 chr2,197301085,197301165,+,MIR,SINE,MIR,120,202,-60,197300966,197301225 -6 + chr2 197302233 197302399 chr2,197301714,197302399,-,L2a,LINE,L2,0,3426,2670,197301714,197305068 +4 - chr2 197312619 197312740 chr2,197312619,197313046,-,MER20B,DNA,hAT-Charlie,0,783,365,197312619,197313410 -5 - chr2 197693106 197693216 chr2,197687546,197693561,-,L1PA2,LINE,L1,-13,6142,124,197687533,197693684 -1 - chr2 197698810 197698864 chr2,197697662,197698924,-,L1M2,LINE,L1,-2568,3575,2185,197695094,197701108 -3 - chr2 197774018 197774094 chr2,197774018,197774094,+,MIRb,SINE,MIR,17,97,-171,197774002,197774265 +6 + chr2 197774150 197774402 chr2,197774150,197774402,+,Charlie16a,DNA,hAT-Charlie,68,336,-6,197774083,197774408 +6 + chr2 197774403 197774491 chr2,197774403,197774491,+,MIRb,SINE,MIR,105,197,-71,197774299,197774562 +6 + chr2 198190964 198190999 chr2,198190698,198191037,+,MLT1A0,LTR,ERVL-MaLR,1,327,-38,198190698,198191075 -5 + chr2 198191245 198191335 chr2,198191151,198191335,+,MIRb,SINE,MIR,72,252,-16,198191080,198191351 -4 + chr2 198299363 198299861 chr2,198298658,198299861,+,Tigger3b,DNA,TcMar-Tigger,1,1231,0,198298658,198299861 -5 + chr2 198299861 198299874 chr2,198299861,198299874,+,(TA)n,Simple_repeat,Simple_repeat,1,13,0,198299861,198299874 -6 + chr2 198299874 198299909 chr2,198299874,198299909,+,(AC)n,Simple_repeat,Simple_repeat,1,35,0,198299874,198299909 -6 + chr2 198299909 198299920 chr2,198299909,198299920,+,(TA)n,Simple_repeat,Simple_repeat,2,12,0,198299908,198299920 -6 + chr2 198299928 198300357 chr2,198299928,198300357,-,MLT2B4,LTR,ERVL,-62,458,1,198299866,198300357 +6 - chr2 198301410 198301509 chr2,198301410,198301509,-,MIR,SINE,MIR,-71,191,80,198301339,198301588 +6 - chr2 198301659 198301809 chr2,198301659,198301809,-,AluSx,SINE,Alu,-5,307,158,198301654,198301966 +6 - chr2 198553195 198553263 chr2,198552350,198553263,+,L1ME4a,LINE,L1,3673,4634,-1512,198548678,198554775 -5 + chr2 198553331 198553538 chr2,198553331,198553559,+,L2a,LINE,L2,3146,3417,-9,198550186,198553568 -2 + chr2 198772259 198772356 chr2,198772193,198772360,+,MIRb,SINE,MIR,5,192,-76,198772189,198772436 -1 + chr2 198882697 198882953 chr2,198882697,198882953,+,MLT1F2,LTR,ERVL-MaLR,1,255,-305,198882697,198883258 -6 + chr2 198882941 198883014 chr2,198882941,198883091,+,MLT1E1A,LTR,ERVL-MaLR,520,680,0,198882422,198883091 -2 + chr2 199325310 199325441 chr2,199325192,199325441,-,MIRb,SINE,MIR,-10,258,5,199325182,199325445 -1 - chr2 199457722 199457757 chr2,199457722,199457757,+,(CGG)n,Simple_repeat,Simple_repeat,1,35,0,199457722,199457757 +6 + chr2 199472476 199472632 chr2,199472476,199472632,-,MIR3,SINE,MIR,0,208,30,199472476,199472661 -6 - chr2 199608068 199608100 chr2,199607975,199608100,-,L2c,LINE,L2,-1,3386,3264,199607974,199611363 -1 - chr2 199629081 199629146 chr2,199629081,199629192,+,MIRc,SINE,MIR,2,110,-98,199629080,199629290 +4 + chr2 199630027 199630099 chr2,199630027,199630409,+,MSTD,LTR,ERVL-MaLR,1,396,0,199630027,199630409 +4 + chr2 199630246 199630409 chr2,199630027,199630409,+,MSTD,LTR,ERVL-MaLR,1,396,0,199630027,199630409 +2 + chr2 199631478 199631506 chr2,199631478,199631506,+,(TTTG)n,Simple_repeat,Simple_repeat,1,31,0,199631478,199631506 +6 + chr2 199631655 199631746 chr2,199631655,199631746,+,L2b,LINE,L2,3272,3366,-9,199628384,199631755 +1 + chr2 199647054 199647179 chr2,199647013,199647487,+,LTR33,LTR,ERVL,25,495,-20,199646989,199647507 +3 + chr2 199878495 199878700 chr2,199878023,199878900,-,LTR1D1,LTR,ERV1,0,899,1,199878023,199878900 +5 - chr2 199879167 199879797 chr2,199879167,199879863,-,LTR38C,LTR,ERV1,0,711,1,199879167,199879863 +5 - chr2 199880497 199880598 chr2,199880325,199880621,+,AluJr,SINE,Alu,2,298,-14,199880324,199880635 -3 + chr2 199880968 199881060 chr2,199880621,199881274,-,L1ME3E,LINE,L1,-79,6163,5531,199880542,199886804 +3 - chr2 199881944 199882034 chr2,199881737,199882034,+,AluJb,SINE,Alu,1,298,-14,199881737,199882048 -5 + chr2 199882145 199882212 chr2,199882145,199882212,+,(AT)n,Simple_repeat,Simple_repeat,1,68,0,199882145,199882212 -6 + chr2 199882375 199882806 chr2,199882375,199882890,-,MLT1H1,LTR,ERVL-MaLR,-8,547,1,199882367,199882890 +5 - chr2 199894083 199894299 chr2,199893917,199894299,+,L2c,LINE,L2,2968,3385,-2,199890950,199894301 -5 + chr2 199896562 199897096 chr2,199896562,199897096,-,MLT1N2,LTR,ERVL-MaLR,-4,558,1,199896558,199897096 +6 - chr2 199897123 199897246 chr2,199897123,199897296,-,MIRb,SINE,MIR,-46,222,38,199897077,199897333 +1 - chr2 199900507 199900667 chr2,199900409,199900667,-,L1MDa,LINE,L1,-6351,282,24,199894058,199900690 +4 - chr2 199900671 199900729 chr2,199900671,199901072,+,MLT1H-int,LTR,ERVL-MaLR,242,647,-762,199900430,199901834 -2 + chr2 199908333 199908640 chr2,199908298,199908640,+,MER102b,DNA,hAT-Charlie,2,334,-7,199908297,199908647 -5 + chr2 199909360 199909669 chr2,199909360,199909669,+,AluSx,SINE,Alu,1,304,-8,199909360,199909677 -6 + chr2 200712305 200712689 chr2,200712028,200712689,+,L1M5,LINE,L1,4333,5031,-1115,200707696,200713804 -5 + chr2 200712822 200713012 chr2,200712822,200713012,+,L1M5,LINE,L1,5273,5495,-629,200707550,200713641 -6 + chr2 200713481 200713502 chr2,200713481,200713502,+,(T)n,Simple_repeat,Simple_repeat,1,21,0,200713481,200713502 -6 + chr2 200735037 200735177 chr2,200734747,200735417,-,L1MC4,LINE,L1,-1,7994,7239,200734746,200742655 +1 - chr2 200780498 200780618 chr2,200780498,200780618,-,L2b,LINE,L2,-6,3369,3245,200780492,200783862 +6 - chr2 200824673 200824970 chr2,200824672,200824970,-,AluYm1,SINE,Alu,-12,299,2,200824660,200824971 -1 - chr2 200824970 200825067 chr2,200824970,200825067,-,MER106B,DNA,hAT-Charlie,-53,1006,892,200824917,200825958 -6 - chr2 200825067 200825357 chr2,200825067,200825357,-,AluSg,SINE,Alu,-13,297,1,200825054,200825357 -6 - chr2 200825357 200825410 chr2,200825357,200825410,-,MER106B,DNA,hAT-Charlie,-168,891,877,200825189,200826286 -6 - chr2 200826372 200826407 chr2,200826372,200826407,+,(ATAG)n,Simple_repeat,Simple_repeat,1,35,0,200826372,200826407 +6 + chr2 200826407 200826598 chr2,200826407,200826598,-,AluYh3,SINE,Alu,0,311,118,200826407,200826715 -6 - chr2 200978495 200978774 chr2,200978464,200978774,-,AluSx3,SINE,Alu,0,311,1,200978464,200978774 -2 - chr2 201101382 201101665 chr2,201101362,201101665,-,AluSz,SINE,Alu,-11,301,1,201101351,201101665 -1 - chr2 201101665 201101749 chr2,201101665,201101749,-,L1PB1,LINE,L1,-212,5939,5857,201101453,201107605 -6 - chr2 201101757 201101885 chr2,201101757,201102054,-,AluSz,SINE,Alu,-10,302,1,201101747,201102054 -4 - chr2 201102372 201102497 chr2,201102191,201102497,+,AluSz,SINE,Alu,1,306,-6,201102191,201102503 +2 + chr2 201102991 201103070 chr2,201102991,201103070,-,L1MEc,LINE,L1,-5017,1383,1300,201097974,201104369 -6 - chr2 201103070 201103136 chr2,201103070,201103389,-,AluSx1,SINE,Alu,0,312,1,201103070,201103389 -5 - chr2 201149961 201150056 chr2,201149961,201150056,+,AluJb,SINE,Alu,3,115,-197,201149959,201150253 -6 + chr2 201150056 201150347 chr2,201150056,201150347,+,AluSx4,SINE,Alu,4,294,-16,201150053,201150363 -6 + chr2 201150347 201150489 chr2,201150347,201150514,+,AluJb,SINE,Alu,117,300,-12,201150231,201150526 -2 + chr2 201166965 201166984 chr2,201165587,201166984,-,SVA_A,Retroposon,SVA,-1,1386,23,201165586,201167006 -1 - chr2 201167231 201167272 chr2,201167231,201167526,+,AluJo,SINE,Alu,11,303,-9,201167221,201167535 +4 + chr2 201167410 201167526 chr2,201167231,201167526,+,AluJo,SINE,Alu,11,303,-9,201167221,201167535 +2 + chr2 202114110 202114271 chr2,202114110,202114271,+,MIR3,SINE,MIR,12,186,-44,202114099,202114315 -6 + chr2 202115080 202115132 chr2,202115080,202115132,+,(TTTGG)n,Simple_repeat,Simple_repeat,1,55,0,202115080,202115132 -6 + chr2 202115172 202115250 chr2,202115172,202115250,+,MADE1,DNA,TcMar-Mariner,1,79,-1,202115172,202115251 -6 + chr2 202116294 202116307 chr2,202116294,202116307,+,(TGTTTGT)n,Simple_repeat,Simple_repeat,1,13,0,202116294,202116307 -6 + chr2 202116307 202116604 chr2,202116307,202116604,-,AluJr,SINE,Alu,-17,295,1,202116290,202116604 +6 - chr2 202116604 202116633 chr2,202116604,202116633,+,(TGTTTGT)n,Simple_repeat,Simple_repeat,7,35,0,202116598,202116633 -6 + chr2 202116673 202117058 chr2,202116673,202117219,+,MLT1F1,LTR,ERVL-MaLR,1,567,-2,202116673,202117221 -1 + chr2 202179270 202179283 chr2,202179203,202179283,+,L1ME4a,LINE,L1,5551,5627,-497,202173653,202179780 -4 + chr2 203328870 203328918 chr2,203328870,203328918,+,(CCCGCC)n,Simple_repeat,Simple_repeat,1,51,0,203328870,203328918 -6 + chr2 204091343 204091449 chr2,204091322,204091486,-,FRAM,SINE,Alu,-11,165,1,204091311,204091486 -3 - chr2 204102214 204102272 chr2,204101902,204102417,-,MLT1D,LTR,ERVL-MaLR,0,505,3,204101902,204102419 -3 - chr2 204234844 204234985 chr2,204234844,204235411,+,MLT1K,LTR,ERVL-MaLR,6,587,-8,204234839,204235419 -1 + chr2 204473690 204473834 chr2,204473690,204473834,-,MIRc,SINE,MIR,0,268,127,204473690,204473960 +6 - chr2 204507631 204507672 chr2,204507631,204507969,-,L3b,LINE,CR1,-225,3874,3556,204507406,204511524 -5 - chr2 205756469 205756655 chr2,205756464,205756655,-,MER3,DNA,hAT-Charlie,-11,198,1,205756453,205756655 +5 - chr2 205759497 205759543 chr2,205759306,205759543,+,Plat_L3,LINE,CR1,3330,3572,-14,205755977,205759557 -5 + chr2 205989709 205989755 chr2,205989709,205989788,+,AluSz,SINE,Alu,5,84,-228,205989705,205990016 +4 + chr2 206115547 206115562 chr2,206115272,206115562,+,MLT1A1,LTR,ERVL-MaLR,1,315,-50,206115272,206115612 +1 + chr2 206116603 206116740 chr2,206116603,206116740,+,AluJb,SINE,Alu,1,136,-176,206116603,206116916 +6 + chr2 206116740 206116750 chr2,206116740,206117044,+,AluSg,SINE,Alu,2,306,-4,206116739,206117048 +4 + chr2 206122149 206122271 chr2,206122149,206122271,-,AluJr,SINE,Alu,-187,125,4,206121962,206122274 -6 - chr2 206203410 206203677 chr2,206203410,206203755,+,MER21C,LTR,ERVL,302,673,-265,206203109,206204020 +4 + chr2 206240443 206240543 chr2,206240373,206240543,-,LTR88b,LTR,Gypsy?,-632,205,34,206239741,206240576 -2 - chr2 206255866 206255982 chr2,206255838,206256140,-,AluSz,SINE,Alu,-10,302,1,206255828,206256140 -3 - chr2 206259410 206259511 chr2,206259208,206259511,+,AluJr,SINE,Alu,1,294,-18,206259208,206259529 +1 + chr2 206263379 206263696 chr2,206263374,206263696,-,MER31-int,LTR,ERV1,-4437,499,165,206258937,206263860 -5 - chr2 206263735 206264043 chr2,206263735,206264043,+,AluSp,SINE,Alu,1,307,-6,206263735,206264049 +6 + chr2 206264191 206264376 chr2,206264191,206264376,-,MER67B,LTR,ERV1,-10,651,462,206264181,206264837 -6 - chr2 206264373 206264542 chr2,206264373,206264542,+,MER21B,LTR,ERVL,327,498,-370,206264047,206264912 +6 + chr2 206264685 206265007 chr2,206264685,206265007,-,AluJr,SINE,Alu,-13,299,3,206264672,206265009 -6 - chr2 206640073 206640178 chr2,206640014,206640318,-,AluSz6,SINE,Alu,-18,294,2,206639996,206640319 -1 - chr2 206640994 206641133 chr2,206640994,206641133,-,L1PA10,LINE,L1,-4478,1875,1737,206636516,206642869 -6 - chr2 206821190 206821359 chr2,206821188,206821359,-,L2c,LINE,L2,0,3426,3262,206821188,206824620 +5 - chr2 206821473 206821534 chr2,206821473,206821534,-,L2a,LINE,L2,-2,3424,3364,206821471,206824897 +6 - chr2 206821762 206821935 chr2,206821762,206821935,+,MIR3,SINE,MIR,6,193,-15,206821757,206821950 -6 + chr2 206822119 206822287 chr2,206822119,206822287,+,MIRb,SINE,MIR,20,209,-59,206822100,206822346 -6 + chr2 206867827 206868242 chr2,206867702,206868242,+,MLT1K,LTR,ERVL-MaLR,1,595,0,206867702,206868242 +2 + chr2 206868245 206868289 chr2,206868245,206868350,-,MIR3,SINE,MIR,-61,147,30,206868184,206868379 -5 - chr2 207121503 207121618 chr2,207121377,207121618,-,MIRb,SINE,MIR,-10,258,2,207121367,207121619 +4 - chr2 207186717 207186988 chr2,207186643,207187162,-,MLT1F,LTR,ERVL-MaLR,-2,546,1,207186641,207187162 +5 - chr2 207228294 207228308 chr2,207228294,207228501,-,MIR,SINE,MIR,0,262,16,207228294,207228516 -5 - chr2 207235372 207235426 chr2,207235372,207235426,-,MIR3,SINE,MIR,-54,154,101,207235318,207235526 +6 - chr2 207235437 207235610 chr2,207235437,207235808,-,MLT1A0,LTR,ERVL-MaLR,-3,362,1,207235434,207235808 +2 - chr2 207235773 207235808 chr2,207235437,207235808,-,MLT1A0,LTR,ERVL-MaLR,-3,362,1,207235434,207235808 +4 - chr2 207235981 207236061 chr2,207235981,207236061,-,L2a,LINE,L2,-3,3423,3348,207235978,207239408 +6 - chr2 207245343 207245743 chr2,207245343,207245743,+,LTR16,LTR,ERVL,35,436,-2,207245309,207245745 +5 + chr2 207268701 207268759 chr2,207268678,207268759,+,Tigger19b,DNA,TcMar-Tigger,225,318,-232,207268454,207268991 +2 + chr2 207268759 207268893 chr2,207268759,207268927,-,MIRb,SINE,MIR,-8,260,93,207268751,207269019 -4 - chr2 207270484 207270655 chr2,207270465,207270655,+,MLT1B,LTR,ERVL-MaLR,182,390,0,207270284,207270655 +2 + chr2 207327890 207328175 chr2,207327788,207328331,-,Charlie25,DNA,hAT-Charlie,-1188,1336,737,207326600,207329067 +5 - chr2 207417650 207417744 chr2,207417650,207417807,+,X6B_LINE,LINE,CR1,900,1053,-19,207416751,207417826 -2 + chr2 207517620 207517692 chr2,207517575,207517692,+,MLT1I,LTR,ERVL-MaLR,138,263,-148,207517438,207517840 -4 + chr2 207662375 207662522 chr2,207662277,207662604,+,MLT1A1,LTR,ERVL-MaLR,85,406,-2,207662193,207662606 +1 + chr2 207666681 207666780 chr2,207666501,207666780,+,MER102b,DNA,hAT-Charlie,57,322,-19,207666445,207666799 +2 + chr2 207821307 207821325 chr2,207821307,207821325,+,(GA)n,Simple_repeat,Simple_repeat,1,18,0,207821307,207821325 -6 + chr2 207821748 207821866 chr2,207821748,207821878,-,AluJo,SINE,Alu,-183,129,1,207821565,207821878 +2 - chr2 207822085 207822110 chr2,207821990,207822110,-,FLAM_A,SINE,Alu,-10,132,1,207821980,207822110 +4 - chr2 207822468 207822491 chr2,207822468,207822491,+,(AAAC)n,Simple_repeat,Simple_repeat,1,23,0,207822468,207822491 -6 + chr2 207868582 207868668 chr2,207868431,207868668,+,MIRb,SINE,MIR,3,260,-8,207868429,207868676 -5 + chr2 208255903 208256010 chr2,208255694,208256010,-,AluJb,SINE,Alu,-10,302,3,208255684,208256012 -2 - chr2 208540128 208540413 chr2,208540128,208540433,+,AluY,SINE,Alu,1,301,-10,208540128,208540443 +5 + chr2 210030733 210030766 chr2,210030611,210030766,-,L1MC5a,LINE,L1,-276,2501,2338,210030335,210033103 -1 - chr2 210035156 210035244 chr2,210034848,210035307,-,L1MC4,LINE,L1,-14,8028,7473,210034834,210042779 -3 - chr2 210063784 210063942 chr2,210062397,210063942,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,210062397,210063942 +2 + chr2 210063942 210064293 chr2,210063942,210064293,+,THE1B,LTR,ERVL-MaLR,1,364,0,210063942,210064293 +6 + chr2 210064297 210064346 chr2,210064297,210064346,+,MIR,SINE,MIR,211,262,0,210064087,210064346 +6 + chr2 210218472 210218564 chr2,210218275,210218586,-,AluJr,SINE,Alu,0,312,1,210218275,210218586 -3 - chr2 210427749 210427923 chr2,210427019,210428103,-,MER11B,LTR,ERVK,0,1236,1,210427019,210428103 -3 - chr2 210428040 210428103 chr2,210427019,210428103,-,MER11B,LTR,ERVK,0,1236,1,210427019,210428103 -2 - chr2 210442542 210442699 chr2,210442528,210443212,+,L1MD2,LINE,L1,26,739,-5808,210442503,210449020 +3 + chr2 210468505 210468584 chr2,210468449,210468930,+,MLT1J,LTR,ERVL-MaLR,5,502,-10,210468445,210468940 +5 + chr2 210468682 210468930 chr2,210468449,210468930,+,MLT1J,LTR,ERVL-MaLR,5,502,-10,210468445,210468940 +5 + chr2 212581357 212581408 chr2,212580820,212581426,-,L1MA7,LINE,L1,0,6291,5690,212580820,212587115 +5 - chr2 212796011 212796044 chr2,212795830,212796044,+,MLT1L,LTR,ERVL-MaLR,9,221,-389,212795822,212796433 +2 + chr2 212796068 212796273 chr2,212796068,212796273,+,MLT1L,LTR,ERVL-MaLR,298,529,-81,212795771,212796354 +6 + chr2 212796355 212796469 chr2,212796355,212796469,-,MIRb,SINE,MIR,-3,259,128,212796352,212796596 -6 - chr2 212796611 212796720 chr2,212796611,212796765,+,MIRb,SINE,MIR,2,179,-89,212796610,212796854 +5 + chr2 212816923 212817007 chr2,212816857,212817132,+,LTR16E2,LTR,ERVL,262,562,-6,212816596,212817138 +3 + chr2 212817391 212817488 chr2,212817335,212817644,-,AluJb,SINE,Alu,-6,306,2,212817329,212817645 -3 - chr2 212896932 212897043 chr2,212896853,212897206,-,ERVL-E-int,LTR,ERVL,-2860,2807,2461,212893993,212899666 +3 - chr2 212911029 212911062 chr2,212911029,212911190,+,MIRb,SINE,MIR,12,175,-93,212911018,212911283 +4 + chr2 213167521 213167712 chr2,213167521,213167755,-,MER126,DNA,DNA,0,449,215,213167521,213167969 +1 - chr2 213266995 213267060 chr2,213266773,213267236,-,MER87B,LTR,ERV1,0,509,31,213266773,213267266 +5 - chr2 213276552 213276607 chr2,213276503,213276607,-,MLT1K,LTR,ERVL-MaLR,-10,585,475,213276493,213277081 +5 - chr2 213276636 213276945 chr2,213276636,213276945,-,L1MC3,LINE,L1,-2,7783,7454,213276634,213284398 +6 - chr2 213276946 213277310 chr2,213276946,213277310,+,THE1B,LTR,ERVL-MaLR,1,364,0,213276946,213277310 -6 + chr2 213277310 213277941 chr2,213277310,213278886,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,213277310,213278886 -2 + chr2 213278368 213278531 chr2,213277310,213278886,+,THE1B-int,LTR,ERVL-MaLR,1,1580,0,213277310,213278886 -3 + chr2 214250040 214250178 chr2,214249836,214250181,-,MLT1J1,LTR,ERVL-MaLR,0,444,76,214249836,214250256 +5 - chr2 214311602 214311727 chr2,214309952,214311778,-,L1PA17,LINE,L1,-5139,2076,343,214304813,214312120 +5 - chr2 214472157 214472249 chr2,214471898,214472255,-,MLT1K,LTR,ERVL-MaLR,-78,517,143,214471820,214472397 +3 - chr2 214525192 214525250 chr2,214525192,214525250,-,Charlie4z,DNA,hAT-Charlie,-6,161,105,214525186,214525354 -6 - chr2 214536762 214536845 chr2,214536757,214536845,+,L2a,LINE,L2,2877,2964,-455,214533881,214537300 +2 + chr2 214683105 214683126 chr2,214683105,214683347,+,L3,LINE,CR1,1698,1920,-2179,214681408,214685526 -2 + chr2 214684115 214684246 chr2,214683796,214689805,+,L1PA2,LINE,L1,150,6155,0,214683647,214689805 -1 + chr2 214960521 214960590 chr2,214960521,214960613,+,L2b,LINE,L2,3278,3370,-5,214957244,214960618 +4 + chr2 214962274 214962474 chr2,214962274,214962474,+,MIRb,SINE,MIR,1,265,-3,214962274,214962477 +6 + chr2 214962514 214963274 chr2,214962514,214963631,+,L1PA11,LINE,L1,2584,3695,-2451,214959931,214966082 +5 + chr2 215004782 215004809 chr2,215004703,215004828,+,MIRb,SINE,MIR,40,172,-96,215004664,215004924 +1 + chr2 215013056 215013217 chr2,215013042,215013229,-,L2a,LINE,L2,-1,3425,3235,215013041,215016463 -1 - chr2 215017662 215017725 chr2,215017637,215017725,-,AluYc,SINE,Alu,-9,290,203,215017628,215017927 -2 - chr2 215020724 215020796 chr2,215020698,215020891,-,AluJb,SINE,Alu,-12,300,112,215020686,215021002 -5 - chr2 215022953 215022996 chr2,215022953,215022996,+,A-rich,Low_complexity,Low_complexity,1,43,0,215022953,215022996 +6 + chr2 215023207 215023327 chr2,215023207,215023327,-,L2b,LINE,L2,-1,3374,3253,215023206,215026579 -6 - chr2 215038982 215039019 chr2,215038982,215039019,+,A-rich,Low_complexity,Low_complexity,1,37,0,215038982,215039019 +6 + chr2 215042240 215042379 chr2,215042240,215042546,-,AluJr,SINE,Alu,-16,296,1,215042224,215042546 -5 - chr2 215277608 215277683 chr2,215277579,215277877,-,AluJb,SINE,Alu,-9,303,6,215277570,215277882 -3 - chr2 215277769 215277877 chr2,215277579,215277877,-,AluJb,SINE,Alu,-9,303,6,215277570,215277882 -2 - chr2 215277877 215277947 chr2,215277877,215278023,-,L1ME4a,LINE,L1,-233,5891,5745,215277644,215283767 -5 - chr2 215456892 215456992 chr2,215456886,215457021,+,L1M6,LINE,L1,747,896,-5600,215456140,215462621 +3 + chr2 215461966 215462364 chr2,215461966,215462364,-,L2b,LINE,L2,-3,3372,2970,215461963,215465333 -6 - chr2 215463613 215463660 chr2,215463522,215463660,+,MLT1N2,LTR,ERVL-MaLR,431,562,0,215463092,215463660 +2 + chr2 215476667 215476730 chr2,215476664,215476802,+,Arthur1,DNA,hAT-Tip100,418,569,-3378,215476247,215480180 +1 + chr2 215479922 215480248 chr2,215479869,215480279,+,LTR33,LTR,ERVL,101,506,-9,215479769,215480288 +5 + chr2 215533133 215533173 chr2,215532866,215533255,+,MSTA,LTR,ERVL-MaLR,1,428,0,215532866,215533255 +1 + chr2 215545376 215545411 chr2,215545315,215545411,-,MER5B,DNA,hAT-Charlie,-48,130,41,215545267,215545451 +4 - chr2 215545411 215545526 chr2,215545411,215545713,+,AluYf1,SINE,Alu,1,301,-10,215545411,215545723 -1 + chr2 215546198 215546367 chr2,215546181,215546367,-,MER5A,DNA,hAT-Charlie,-2,187,1,215546179,215546367 -1 - chr2 215582576 215582635 chr2,215582499,215582852,-,MLT1A0,LTR,ERVL-MaLR,0,365,3,215582499,215582854 +1 - chr2 215611647 215611751 chr2,215611623,215612198,+,L2c,LINE,L2,2808,3387,0,215608816,215612198 +3 + chr2 215611623 215612198 chr2,215611623,215612198,+,L2c,LINE,L2,2808,3387,0,215608816,215612198 -6 + chr2 215612287 215612491 chr2,215612287,215612491,+,L1ME3,LINE,L1,5931,6138,-24,215606357,215612515 -6 + chr2 215613211 215613698 chr2,215613211,215613698,-,L1M2b,LINE,L1,-6705,504,13,215606506,215613710 +6 - chr2 215615277 215615441 chr2,215614980,215615441,-,LTR12E,LTR,ERV1,-860,462,1,215614120,215615441 +4 - chr2 215615522 215615634 chr2,215615522,215615731,-,LTR50,LTR,ERVL,-572,223,3,215614950,215615733 +2 - chr2 215620379 215620397 chr2,215620379,215620535,+,CR1_Mam,LINE,CR1,1779,1949,-255,215618601,215620790 -2 + chr2 215641282 215641328 chr2,215641282,215641328,+,(TCCTCCA)n,Simple_repeat,Simple_repeat,1,48,0,215641282,215641328 -6 + chr2 215665380 215665445 chr2,215665367,215665466,+,Helitron2Na_Mam,RC?,Helitron?,151,254,-70,215665217,215665536 +3 + chr2 215666983 215667005 chr2,215666925,215667005,-,UCON132b,DNA,hAT-Tip100,-32,116,32,215666893,215667036 -2 - chr2 215713322 215713404 chr2,215713322,215713404,+,A-rich,Low_complexity,Low_complexity,1,87,0,215713322,215713404 +6 + chr2 215747304 215747394 chr2,215747230,215747481,+,MER103C,DNA,hAT-Charlie,4,270,-27,215747227,215747508 -3 + chr2 215797360 215797591 chr2,215797342,215797609,+,AluSc8,SINE,Alu,6,272,-39,215797337,215797648 -3 + chr2 215831449 215831546 chr2,215831449,215831546,-,Charlie10b,DNA,hAT-Charlie,-131,111,4,215831318,215831549 +6 - chr2 215831546 215831585 chr2,215831546,215831585,+,Charlie10b,DNA,hAT-Charlie,191,234,-8,215831356,215831593 -6 + chr2 215843326 215843477 chr2,215842493,215843477,+,L2a,LINE,L2,2414,3418,-8,215840080,215843485 -4 + chr2 215843624 215843646 chr2,215843544,215843646,+,L2b,LINE,L2,3080,3188,-187,215840465,215843833 -4 + chr2 215870061 215870145 chr2,215870061,215870559,+,MLT1F,LTR,ERVL-MaLR,3,548,0,215870059,215870559 +5 + chr2 215870264 215870518 chr2,215870061,215870559,+,MLT1F,LTR,ERVL-MaLR,3,548,0,215870059,215870559 +5 + chr2 215939308 215939621 chr2,215939232,215939621,-,LTR82B,LTR,ERVL,-12,818,402,215939220,215940022 +5 - chr2 215941684 215941719 chr2,215940878,215942020,-,ERV3-16A3_I-int,LTR,ERVL,-2387,2609,1275,215938491,215943294 +1 - chr2 216211770 216212657 chr2,216211770,216212657,-,MER49,LTR,ERV1,-10,913,1,216211760,216212657 -6 - chr2 216212657 216212950 chr2,216212657,216212950,-,LOR1-int,LTR,ERV1,-1023,7097,6849,216211634,216219798 -6 - chr2 216212954 216213148 chr2,216212954,216213148,-,LOR1-int,LTR,ERV1,-625,6133,5939,216212329,216219086 -6 - chr2 216213150 216213294 chr2,216213150,216213294,-,LOR1-int,LTR,ERV1,-1367,4964,4801,216211783,216218094 -6 - chr2 216213295 216213519 chr2,216213295,216214689,-,MER101-int,LTR,ERV1,-2868,3730,1558,216210427,216216246 -5 - chr2 216217045 216217581 chr2,216216680,216217581,-,MER49,LTR,ERV1,-9,914,1,216216671,216217581 -1 - chr2 216218027 216218234 chr2,216218027,216218234,+,MIR,SINE,MIR,21,249,-13,216218007,216218247 +6 + chr2 216218936 216218978 chr2,216218936,216218978,+,(CA)n,Simple_repeat,Simple_repeat,1,42,0,216218936,216218978 +6 + chr2 216219076 216219241 chr2,216219076,216219241,-,MLT1C,LTR,ERVL-MaLR,-291,176,1,216218785,216219241 -6 - chr2 216219732 216220192 chr2,216219732,216220260,+,LTR32,LTR,ERVL,1,457,0,216219732,216220260 +5 + chr2 216259681 216259727 chr2,216259681,216259727,+,(GAGGCA)n,Simple_repeat,Simple_repeat,1,48,0,216259681,216259727 +6 + chr2 216265521 216265790 chr2,216265503,216265790,-,AluJb,SINE,Alu,-18,294,2,216265485,216265791 -2 - chr2 216265794 216265957 chr2,216265794,216265957,-,MER5A,DNA,hAT-Charlie,-7,182,20,216265787,216265976 -6 - chr2 216385288 216385384 chr2,216385282,216385459,+,MIR,SINE,MIR,54,247,-15,216385229,216385474 -5 + chr2 216387503 216387623 chr2,216387416,216387801,-,MLT1J2,LTR,ERVL-MaLR,0,448,37,216387416,216387837 +3 - chr2 216396904 216397002 chr2,216396712,216397184,-,MLT1F,LTR,ERVL-MaLR,-9,539,1,216396703,216397184 +3 - chr2 216483289 216483420 chr2,216483289,216483420,-,L2a,LINE,L2,0,3426,3285,216483289,216486704 +6 - chr2 216483436 216483609 chr2,216483436,216483609,-,MER58B,DNA,hAT-Charlie,-149,192,1,216483287,216483609 +6 - chr2 216483617 216483705 chr2,216483617,216483705,-,MER33,DNA,hAT-Charlie,0,324,217,216483617,216483921 +6 - chr2 216483705 216483936 chr2,216483705,216483956,+,AluSp,SINE,Alu,41,300,-13,216483665,216483969 -2 + chr2 216487804 216488108 chr2,216487713,216488108,+,Tigger3a,DNA,TcMar-Tigger,2,348,0,216487712,216488108 -5 + chr2 216598644 216598747 chr2,216598644,216598747,+,MIR3,SINE,MIR,1,115,-93,216598644,216598840 -6 + chr2 216598838 216598880 chr2,216598838,216598880,+,(TCTTTTC)n,Simple_repeat,Simple_repeat,1,44,0,216598838,216598880 -6 + chr2 216598988 216599024 chr2,216598988,216599357,+,L2a,LINE,L2,2749,3164,-262,216596240,216599619 -2 + chr2 216604771 216604783 chr2,216604701,216604783,-,MIR3,SINE,MIR,-2,206,116,216604699,216604898 -1 - chr2 216764889 216765010 chr2,216764866,216765479,+,L1MD1,LINE,L1,5598,6242,0,216759269,216765479 +3 + chr2 216804983 216805137 chr2,216804983,216805137,+,MIRb,SINE,MIR,70,231,-37,216804914,216805174 +6 + chr2 216854555 216854611 chr2,216854555,216854611,-,MIR3,SINE,MIR,-43,165,107,216854512,216854717 +6 - chr2 216854969 216855059 chr2,216854839,216855059,-,MIRb,SINE,MIR,-37,231,2,216854802,216855060 +4 - chr2 216862200 216862312 chr2,216862184,216862333,+,L2a,LINE,L2,3287,3422,-4,216858898,216862337 +1 + chr2 216866383 216866400 chr2,216866383,216866400,+,(TTA)n,Simple_repeat,Simple_repeat,1,17,0,216866383,216866400 -6 + chr2 216868141 216868248 chr2,216868141,216868248,-,MIRb,SINE,MIR,-142,126,18,216867999,216868265 -6 - chr2 216873385 216873547 chr2,216873385,216873547,-,MIRb,SINE,MIR,-33,235,52,216873352,216873598 +6 - chr2 216981971 216982129 chr2,216977758,216983154,-,L1PA7,LINE,L1,-1033,5428,8,216976725,216983161 -3 - chr2 217295904 217295987 chr2,217295712,217296121,+,L1MEg,LINE,L1,10,435,-6017,217295703,217302138 +3 + chr2 217296632 217296718 chr2,217296529,217296718,+,L1MEg,LINE,L1,777,958,-5494,217295753,217302212 +2 + chr2 217296710 217296770 chr2,217296710,217297692,+,L1MEg,LINE,L1,2115,3100,-4450,217294596,217302142 +4 + chr2 217985464 217985581 chr2,217985405,217985720,-,AluSp,SINE,Alu,0,313,2,217985405,217985721 -3 - chr2 217992531 217992615 chr2,217992531,217992789,+,GA-rich,Low_complexity,Low_complexity,1,262,0,217992531,217992789 +5 + chr2 218255319 218255541 chr2,218255305,218255541,-,L1MD2,LINE,L1,-11,6348,6101,218255294,218261641 -1 - chr2 218255541 218255639 chr2,218255541,218255639,+,MER112,DNA,hAT-Charlie,57,177,-84,218255485,218255723 +6 + chr2 218255890 218255933 chr2,218255890,218255933,+,MamRep137,DNA,TcMar-Tigger,417,459,-51,218255474,218255984 +6 + chr2 218255937 218256014 chr2,218255937,218256014,-,FLAM_C,SINE,Alu,-169,133,64,218255768,218256077 -6 - chr2 218255994 218256079 chr2,218255994,218256079,-,AluY,SINE,Alu,-98,204,113,218255896,218256191 -6 - chr2 218256152 218256276 chr2,218256152,218256276,-,Tigger11a,DNA,TcMar-Tigger,-66,669,524,218256086,218256799 -6 - chr2 218256285 218256420 chr2,218256285,218256420,+,AluJo,SINE,Alu,1,94,-218,218256285,218256638 +6 + chr2 218256420 218256711 chr2,218256420,218256711,+,AluSq2,SINE,Alu,1,296,-17,218256420,218256728 +6 + chr2 218256711 218256928 chr2,218256711,218256928,+,AluJo,SINE,Alu,95,296,-16,218256617,218256944 +6 + chr2 218257220 218257352 chr2,218257220,218257352,+,MIRb,SINE,MIR,59,207,-61,218257162,218257413 +6 + chr2 218327804 218327863 chr2,218327742,218327863,+,L2a,LINE,L2,2574,2691,-728,218325169,218328591 -4 + chr2 218327863 218327959 chr2,218327863,218327984,+,AluSq2,SINE,Alu,185,305,-8,218327679,218327992 -2 + chr2 218351160 218351226 chr2,218350984,218351365,-,HUERS-P3b-int,LTR,ERV1,-715,6703,6322,218350269,218357686 +3 - chr2 218366665 218366798 chr2,218366624,218366956,-,MLT1A,LTR,ERVL-MaLR,-6,368,48,218366618,218367003 +5 - chr2 218366927 218366956 chr2,218366624,218366956,-,MLT1A,LTR,ERVL-MaLR,-6,368,48,218366618,218367003 +5 - chr2 218399086 218399187 chr2,218399086,218399187,-,L2a,LINE,L2,-223,3164,3053,218398863,218402239 +6 - chr2 218818951 218819025 chr2,218818951,218819025,-,L1ME3A,LINE,L1,-1,6172,6108,218818950,218825132 -6 - chr2 218900811 218900830 chr2,218900419,218900830,-,L1MC4,LINE,L1,-197,7845,7424,218900222,218908253 +5 - chr2 218900819 218901171 chr2,218900819,218901207,-,L1MC4,LINE,L1,-1022,7020,6659,218899797,218907865 +2 - chr2 218927163 218927213 chr2,218927057,218927213,+,MLT1L,LTR,ERVL-MaLR,437,599,-11,218926621,218927224 -4 + chr2 218930358 218930636 chr2,218930275,218930764,-,MLT2B3,LTR,ERVL,0,552,111,218930275,218930874 +1 - chr2 218944629 218944749 chr2,218944128,218944749,-,L2a,LINE,L2,-507,2912,2223,218943621,218946971 +5 - chr2 218944809 218944972 chr2,218944809,218944972,+,MamGypLTR1a,LTR,Gypsy,132,311,-471,218944678,218945443 -6 + chr2 218945001 218945136 chr2,218945001,218945170,+,AluJb,SINE,Alu,131,309,-3,218944871,218945173 -2 + chr2 218975393 218975445 chr2,218975128,218975445,+,AluJr,SINE,Alu,3,311,-1,218975126,218975446 +1 + chr2 218976511 218976730 chr2,218976511,218976730,+,MIRc,SINE,MIR,11,257,-11,218976501,218976741 +6 + chr2 218977174 218977342 chr2,218977174,218977342,-,MIR3,SINE,MIR,-35,173,6,218977139,218977347 -6 - chr2 218977549 218978141 chr2,218977549,218978141,-,L3,LINE,CR1,-113,3986,3315,218977436,218981455 -5 - chr2 218978141 218978445 chr2,218978141,218978445,+,AluSz,SINE,Alu,1,310,-2,218978141,218978447 +6 + chr2 218978445 218978471 chr2,218978445,218978471,+,(CAA)n,Simple_repeat,Simple_repeat,1,28,0,218978445,218978471 +6 + chr2 218978474 218978590 chr2,218978474,218978590,-,L3,LINE,CR1,-771,3328,3214,218977703,218981803 -6 - chr2 218978806 218979116 chr2,218978806,218979116,+,AluJb,SINE,Alu,1,299,-13,218978806,218979129 +6 + chr2 218979209 218979517 chr2,218979209,218979517,-,AluSc8,SINE,Alu,0,311,1,218979209,218979517 -6 - chr2 218979622 218979654 chr2,218979622,218979654,+,A-rich,Low_complexity,Low_complexity,1,33,0,218979622,218979654 +6 + chr2 219015529 219015721 chr2,219015529,219016037,+,L1ME3G,LINE,L1,436,737,-187,219015094,219016224 +5 + chr2 219303997 219304130 chr2,219303996,219304226,+,MIR,SINE,MIR,24,261,-1,219303973,219304227 +5 + chr2 219388766 219388990 chr2,219388766,219388990,-,MIR,SINE,MIR,-3,259,28,219388763,219389017 -6 - chr2 219402589 219402646 chr2,219402552,219402646,+,L2a,LINE,L2,3333,3425,-1,219399220,219402647 +2 + chr2 219403223 219403432 chr2,219403223,219403432,-,MIR,SINE,MIR,-16,246,34,219403207,219403465 -6 - chr2 219403562 219403633 chr2,219403562,219403660,+,Kanga11a,DNA,TcMar-Tc2,873,967,-3,219402690,219403663 +5 + chr2 219425071 219425190 chr2,219424901,219425196,-,AluSg,SINE,Alu,-15,295,1,219424886,219425196 +5 - chr2 219427516 219427631 chr2,219427516,219427631,+,L1MC3,LINE,L1,4501,4608,-1538,219423016,219429169 +6 + chr2 219427697 219427998 chr2,219427697,219427998,+,AluJo,SINE,Alu,1,304,-8,219427697,219428006 +6 + chr2 219428017 219428292 chr2,219428017,219428292,+,L1MC3,LINE,L1,4730,5010,-1136,219423288,219429428 +6 + chr2 219429110 219429319 chr2,219429110,219429352,-,L3,LINE,CR1,-4,4095,3846,219429106,219433197 -5 - chr2 219482073 219482156 chr2,219481946,219482156,+,L2b,LINE,L2,3135,3335,-40,219478812,219482196 -5 + chr2 219497611 219497624 chr2,219497480,219497624,-,MIRc,SINE,MIR,-45,223,75,219497435,219497698 +5 - chr2 219497865 219497923 chr2,219497865,219497923,+,G-rich,Low_complexity,Low_complexity,1,60,0,219497865,219497923 -6 + chr2 219559122 219559165 chr2,219559122,219559165,+,G-rich,Low_complexity,Low_complexity,1,44,0,219559122,219559165 +6 + chr2 219559585 219559626 chr2,219559585,219559627,+,(ATA)n,Simple_repeat,Simple_repeat,1,43,0,219559585,219559627 +5 + chr2 219626599 219626693 chr2,219626599,219626797,+,MIRb,SINE,MIR,77,265,-3,219626523,219626800 -1 + chr2 219645385 219645466 chr2,219645385,219645466,-,MER130,DNA,DNA,-637,957,875,219644748,219646340 -6 - chr2 219685381 219685512 chr2,219685182,219685512,+,MER61B,LTR,ERV1,1,427,0,219685182,219685512 +1 + chr2 219685743 219686069 chr2,219685743,219686069,-,AluSx,SINE,Alu,0,312,1,219685743,219686069 -6 - chr2 219686138 219686205 chr2,219686138,219686205,+,(TC)n,Simple_repeat,Simple_repeat,1,69,0,219686138,219686205 +6 + chr2 219686739 219687010 chr2,219686739,219687010,-,AluSx4,SINE,Alu,-14,296,1,219686725,219687010 -1 - chr2 219687204 219687345 chr2,219687204,219687737,-,MER41B,LTR,ERV1,0,634,127,219687204,219687863 -5 - chr2 219714257 219714454 chr2,219714034,219714454,+,MSTA,LTR,ERVL-MaLR,1,428,0,219714034,219714454 +2 + chr2 219714454 219714585 chr2,219714454,219714585,+,MLT1A0,LTR,ERVL-MaLR,230,365,0,219714225,219714585 +6 + chr2 219730110 219730181 chr2,219729861,219730382,-,L1ME1,LINE,L1,-20,6159,5669,219729841,219736050 -1 - chr2 219737652 219737723 chr2,219737652,219737723,+,MER63D,DNA,hAT-Blackjack,10,84,-977,219737643,219738700 +6 + chr2 219737723 219737799 chr2,219737723,219737799,+,MER63D,DNA,hAT-Blackjack,311,386,-675,219737413,219738474 +5 + chr2 220105918 220105961 chr2,220105918,220106016,+,MLT1O,LTR,ERVL-MaLR,397,496,-46,220105522,220106062 +4 + chr2 220127546 220127674 chr2,220127387,220127674,+,LTR33A,LTR,ERVL,221,520,0,220127167,220127674 +1 + chr2 220212386 220212491 chr2,220212386,220212628,-,UCON11,DNA,TcMar-Tigger,-75,363,115,220212311,220212742 -5 - chr2 220322101 220322120 chr2,220321838,220322120,+,LTR50,LTR,ERVL,232,795,0,220321607,220322120 +2 + chr2 220450299 220450361 chr2,220450267,220450361,-,MER2,DNA,TcMar-Tigger,-253,92,3,220450014,220450363 -2 - chr2 220450361 220450448 chr2,220450361,220450621,+,ERV3-16A3_I-int,LTR,ERVL,4886,5150,-76,220445476,220450697 +4 + chr2 220450602 220450621 chr2,220450361,220450621,+,ERV3-16A3_I-int,LTR,ERVL,4886,5150,-76,220445476,220450697 +2 + chr2 220450696 220451046 chr2,220450696,220451110,+,LTR16,LTR,ERVL,3,438,0,220450694,220451110 +5 + chr2 221637543 221637597 chr2,221637067,221637703,-,L2b,LINE,L2,-171,3204,2550,221636896,221640252 -1 - chr2 221641720 221641813 chr2,221641720,221642001,-,AluSc,SINE,Alu,-10,299,1,221641710,221642001 -5 - chr2 222566899 222567243 chr2,222566852,222567243,-,MLT1A,LTR,ERVL-MaLR,0,374,4,222566852,222567246 +5 - chr2 222567833 222568010 chr2,222567833,222568010,+,L1ME3G,LINE,L1,435,624,-300,222567399,222568310 -6 + chr2 222568403 222568532 chr2,222568403,222568532,+,MIRb,SINE,MIR,71,206,-56,222568333,222568588 -6 + chr2 222568576 222568861 chr2,222568576,222568861,+,AluSx,SINE,Alu,20,304,-8,222568557,222568869 -6 + chr2 222569546 222569719 chr2,222569546,222570309,-,L1ME2,LINE,L1,-63,6101,5229,222569483,222575537 +1 - chr2 223503982 223504162 chr2,223503665,223504162,-,MLT1H,LTR,ERVL-MaLR,0,549,2,223503665,223504163 -2 - chr2 223504276 223504584 chr2,223504276,223504584,+,L1PA6,LINE,L1,5847,6154,0,223498430,223504584 +6 + chr2 223510502 223510903 chr2,223510502,223510903,-,L2a,LINE,L2,-1,3425,2987,223510501,223513889 -6 - chr2 223965869 223965904 chr2,223965869,223965986,-,FLAM_C,SINE,Alu,-10,133,12,223965859,223965997 +2 - chr2 223967482 223967532 chr2,223967234,223967532,-,AluSx,SINE,Alu,-14,298,1,223967220,223967532 +4 - chr2 224467803 224467855 chr2,224467778,224467931,-,MamSINE1,SINE,tRNA-RTE,-110,180,17,224467668,224467947 -1 - chr2 224472974 224473015 chr2,224472974,224473015,+,A-rich,Low_complexity,Low_complexity,1,41,0,224472974,224473015 +6 + chr2 225699593 225699720 chr2,225699593,225699720,-,MER126,DNA,DNA,-127,322,189,225699466,225699908 -6 - chr2 225700271 225700330 chr2,225700271,225700330,+,(GT)n,Simple_repeat,Simple_repeat,1,60,0,225700271,225700330 +6 + chr2 225702313 225702423 chr2,225702313,225702423,-,L2a,LINE,L2,-6,3420,3311,225702307,225705733 -6 - chr2 225702767 225702912 chr2,225702767,225702912,-,MER121,DNA,hAT?,-249,152,1,225702518,225702912 -6 - chr2 225703282 225703342 chr2,225703282,225703342,+,(ATATTTC)n,Simple_repeat,Simple_repeat,1,61,0,225703282,225703342 +6 + chr2 225761559 225761645 chr2,225761495,225761645,+,FAM,SINE,Alu,1,174,-11,225761495,225761656 +1 + chr2 225761668 225762112 chr2,225761668,225762130,+,MLT2A2,LTR,ERVL,1,494,-60,225761668,225762190 +5 + chr2 226804877 226805037 chr2,226804877,226805037,+,AluJo,SINE,Alu,138,298,-14,226804740,226805051 +6 + chr2 226807540 226807625 chr2,226807540,226807817,-,L2,LINE,L2,-341,3078,2792,226807199,226810608 -4 - chr2 226808389 226808637 chr2,226808307,226808907,-,MLT1G,LTR,ERVL-MaLR,0,591,1,226808307,226808907 -3 - chr2 227221164 227221484 chr2,227221164,227221530,+,L2a,LINE,L2,857,1256,-2163,227220308,227223693 -2 + chr2 227222494 227222560 chr2,227222494,227222789,-,L2c,LINE,L2,-49,3338,3023,227222445,227225811 +2 - chr2 227246019 227246071 chr2,227246019,227246071,+,L2b,LINE,L2,3334,3387,0,227242686,227246071 -6 + chr2 227264830 227265166 chr2,227264830,227265166,+,L2b,LINE,L2,3017,3370,-5,227261814,227265171 -6 + chr2 227265875 227265935 chr2,227265762,227266125,-,THE1C,LTR,ERVL-MaLR,0,375,1,227265762,227266125 +3 - chr2 227268353 227268373 chr2,227268158,227268373,-,MIR,SINE,MIR,-17,251,1,227268141,227268373 +4 - chr2 227301845 227301968 chr2,227301845,227301968,-,L3,LINE,CR1,-1683,2416,2285,227300162,227304252 +6 - chr2 227305528 227305655 chr2,227305528,227305678,+,AluSx1,SINE,Alu,143,298,-14,227305386,227305692 -2 + chr2 228483264 228483498 chr2,228483264,228483837,+,Charlie1a,DNA,hAT-Charlie,252,833,-622,228483013,228484459 -2 + chr2 228684285 228684580 chr2,228684125,228685399,+,L1MCa,LINE,L1,1,1271,-5237,228684125,228690636 -1 + chr2 230140068 230140146 chr2,230139858,230140223,+,THE1D,LTR,ERVL-MaLR,1,381,0,230139858,230140223 +3 + chr2 230167107 230167411 chr2,230167095,230167411,-,AluJb,SINE,Alu,-1,311,1,230167094,230167411 -1 - chr2 230167411 230167558 chr2,230167411,230167558,+,MLT1H-int,LTR,ERVL-MaLR,1260,1409,0,230166152,230167558 +5 + chr2 230167557 230167652 chr2,230167557,230167737,+,MLT1H,LTR,ERVL-MaLR,1,185,-364,230167557,230168101 +4 + chr2 230173127 230173367 chr2,230173127,230173367,+,LTR53-int,LTR,ERVL,3,256,-3300,230173125,230176667 +6 + chr2 230173381 230173561 chr2,230173381,230174723,+,LTR53-int,LTR,ERVL,971,2293,-1036,230172411,230175759 +5 + chr2 230173688 230174223 chr2,230173381,230174723,+,LTR53-int,LTR,ERVL,971,2293,-1036,230172411,230175759 +5 + chr2 230411967 230412048 chr2,230411967,230412048,+,G-rich,Low_complexity,Low_complexity,1,82,0,230411967,230412048 -6 + chr2 230520655 230520673 chr2,230520655,230521096,-,LTR44,LTR,ERV1,0,519,25,230520655,230521120 +2 - chr2 230538288 230538404 chr2,230538200,230538487,-,LTR84a,LTR,ERVL,-454,303,13,230537746,230538499 +5 - chr2 230570640 230570715 chr2,230570389,230570770,-,MSTA,LTR,ERVL-MaLR,0,428,3,230570389,230570772 +3 - chr2 230691077 230691109 chr2,230691077,230691109,+,(AC)n,Simple_repeat,Simple_repeat,1,32,0,230691077,230691109 -6 + chr2 230694689 230694835 chr2,230694689,230694835,-,MER92D,LTR,ERV1,0,320,176,230694689,230695010 +6 - chr2 230694835 230695136 chr2,230694835,230695136,+,AluSx,SINE,Alu,1,293,-19,230694835,230695155 -6 + chr2 230695136 230695246 chr2,230695136,230695323,-,MER92D,LTR,ERV1,-145,175,5,230694991,230695327 +2 - chr2 230696303 230696695 chr2,230696258,230698129,-,MER92-int,LTR,ERV1,-210,5008,3078,230696048,230701206 +3 - chr2 230700323 230700475 chr2,230700251,230700475,+,AluSx,SINE,Alu,81,308,-4,230700171,230700479 -4 + chr2 230700475 230700529 chr2,230700475,230700587,-,MER92-int,LTR,ERV1,-3243,1975,1864,230697232,230702450 +1 - chr2 230887468 230887738 chr2,230887468,230888064,+,Tigger3b,DNA,TcMar-Tigger,1,602,-629,230887468,230888693 +5 + chr2 230896169 230896708 chr2,230896169,230896708,+,LTR16E2,LTR,ERVL,8,568,0,230896162,230896708 +6 + chr2 230896779 230896874 chr2,230896779,230896874,+,MLT1K,LTR,ERVL-MaLR,142,240,-355,230896638,230897229 +6 + chr2 230984385 230984424 chr2,230984385,230984424,-,MLT1C,LTR,ERVL-MaLR,-360,107,69,230984025,230984492 +6 - chr2 230984458 230984552 chr2,230984458,230984552,-,MLT1C,LTR,ERVL-MaLR,-371,96,1,230984087,230984552 +6 - chr2 230985187 230985207 chr2,230985187,230985207,+,(AGGG)n,Simple_repeat,Simple_repeat,1,21,0,230985187,230985207 -6 + chr2 230985299 230985354 chr2,230985299,230985354,+,AmnSINE2,SINE,tRNA-Deu,131,183,-175,230985169,230985529 -6 + chr2 230985781 230986110 chr2,230985781,230986258,-,MLT2C2,LTR,ERVL,-2,462,7,230985779,230986264 +2 - chr2 230987474 230987513 chr2,230987474,230987513,+,(CAGGGC)n,Simple_repeat,Simple_repeat,1,39,0,230987474,230987513 -6 + chr2 230987691 230987859 chr2,230987691,230987859,+,MIRb,SINE,MIR,46,223,-45,230987646,230987904 -5 + chr2 230987978 230988179 chr2,230987978,230988221,+,MLT1J,LTR,ERVL-MaLR,86,338,-174,230987893,230988395 -5 + chr2 230991794 230991967 chr2,230991794,230991967,+,MIR3,SINE,MIR,4,187,-21,230991791,230991988 -6 + chr2 231052040 231052275 chr2,231051978,231052275,+,AluSg7,SINE,Alu,1,295,-14,231051978,231052289 +1 + chr2 231389026 231389061 chr2,231389026,231389137,-,L2c,LINE,L2,-230,3157,3054,231388796,231392190 -4 - chr2 231394509 231394732 chr2,231394509,231394732,+,MIR,SINE,MIR,16,261,-1,231394494,231394733 +6 + chr2 231452381 231452649 chr2,231452352,231452649,-,AluSq2,SINE,Alu,-9,304,1,231452343,231452649 -2 - chr2 231508648 231508925 chr2,231508648,231508925,+,AluSz,SINE,Alu,1,311,-1,231508648,231508926 -6 + chr2 231809846 231810003 chr2,231809800,231810003,-,MIRc,SINE,MIR,-39,229,7,231809761,231810009 -1 - chr2 231811648 231811991 chr2,231811648,231811991,+,MER20B,DNA,hAT-Charlie,428,782,-1,231811221,231811992 +6 + chr2 231978764 231978778 chr2,231978764,231978864,+,MER5B,DNA,hAT-Charlie,1,100,-78,231978764,231978942 -2 + chr2 232420924 232420984 chr2,232420924,232420984,+,(CCGCCTG)n,Simple_repeat,Simple_repeat,1,60,0,232420924,232420984 -6 + chr2 232584416 232584592 chr2,232584416,232584592,-,LTR50,LTR,ERVL,-590,205,1,232583826,232584592 +6 - chr2 232590995 232591113 chr2,232590916,232591113,-,L1M5,LINE,L1,-1920,4226,4027,232588996,232595139 +4 - chr2 232595453 232595495 chr2,232595310,232595495,+,L1MC3,LINE,L1,6863,7073,-712,232588448,232596207 -5 + chr2 232595510 232595936 chr2,232595510,232595993,+,L1MC3,LINE,L1,7118,7606,-179,232588393,232596172 -5 + chr2 232606605 232606717 chr2,232606605,232606921,+,AluY,SINE,Alu,1,311,0,232606605,232606921 -2 + chr2 232610732 232610872 chr2,232610595,232610883,+,AluJb,SINE,Alu,1,290,-22,232610595,232610905 -3 + chr2 233012614 233012781 chr2,233012609,233012781,+,MER45A,DNA,hAT-Tip100,1,178,0,233012609,233012781 +1 + chr2 233351132 233351300 chr2,233351132,233351300,-,L1MC3,LINE,L1,0,7785,7639,233351132,233358938 +5 - chr2 233351300 233351472 chr2,233351300,233351472,-,L1PA15,LINE,L1,-1,6164,6001,233351299,233357472 +6 - chr2 233351472 233351645 chr2,233351472,233351645,-,L1MC3,LINE,L1,-147,7638,7468,233351325,233359112 +6 - chr2 233351788 233351817 chr2,233351788,233351817,+,(TTA)n,Simple_repeat,Simple_repeat,1,29,0,233351788,233351817 -6 + chr2 233351817 233352101 chr2,233351817,233352101,-,AluSc8,SINE,Alu,-27,284,1,233351790,233352101 +6 - chr2 233352102 233352166 chr2,233352102,233352166,+,L2c,LINE,L2,2722,2787,-632,233349381,233352798 -6 + chr2 233352612 233352991 chr2,233352612,233352991,-,MLT1B,LTR,ERVL-MaLR,0,390,9,233352612,233352999 +6 - chr2 233353006 233353182 chr2,233353006,233353182,+,MER3,DNA,hAT-Charlie,15,196,-13,233352992,233353195 -6 + chr2 233353262 233353297 chr2,233353262,233353297,+,(CCCATGC)n,Simple_repeat,Simple_repeat,1,37,0,233353262,233353297 -6 + chr2 233708469 233708699 chr2,233708469,233708746,+,AluJo,SINE,Alu,1,278,-34,233708469,233708780 -1 + chr2 233955385 233955435 chr2,233955385,233955452,+,MIRb,SINE,MIR,120,187,-81,233955266,233955533 -1 + chr2 234083352 234083742 chr2,234083352,234083742,-,MLT1A,LTR,ERVL-MaLR,0,374,1,234083352,234083742 -6 - chr2 234109324 234109481 chr2,234109248,234109524,+,MLT2F,LTR,ERVL,6,339,-324,234109243,234109848 +5 + chr2 234222838 234223176 chr2,234222809,234223176,-,THE1D,LTR,ERVL-MaLR,0,381,1,234222809,234223176 -1 - chr2 234223257 234223398 chr2,234223257,234223398,+,L2c,LINE,L2,3250,3383,-4,234220008,234223402 +1 + chr2 234223519 234223642 chr2,234223519,234223642,+,LTR85c,LTR,Gypsy?,692,817,-6,234222828,234223648 +6 + chr2 234223679 234224514 chr2,234223679,234224694,-,L1ME2,LINE,L1,-3,6161,5125,234223676,234229818 -5 - chr2 234454485 234454595 chr2,234454361,234454687,+,L1MEd,LINE,L1,65,412,-6691,234454297,234461378 -1 + chr2 234882279 234882443 chr2,234881912,234882443,-,MER45B,DNA,hAT-Tip100,-17,1023,495,234881895,234882937 +5 - chr2 234882453 234882585 chr2,234882453,234882585,-,MER4A1,LTR,ERV1,-2,470,339,234882451,234882923 +6 - chr2 234882775 234883059 chr2,234882775,234883059,-,MER4A1,LTR,ERV1,-150,514,3,234882625,234883061 +6 - chr2 234883059 234883166 chr2,234883059,234883166,-,MER45B,DNA,hAT-Tip100,-548,492,386,234882511,234883551 +6 - chr2 234883422 234883478 chr2,234883422,234883713,+,AluSq2,SINE,Alu,9,297,-16,234883414,234883729 -2 + chr2 234884700 234884754 chr2,234884445,234884754,-,AluSq2,SINE,Alu,-5,308,1,234884440,234884754 +4 - chr2 234884754 234884956 chr2,234884754,234885033,+,MLT1C,LTR,ERVL-MaLR,174,455,-12,234884581,234885045 -2 + chr2 234888280 234888373 chr2,234888093,234888373,+,L1M5,LINE,L1,4367,4663,-1483,234883727,234889856 -4 + chr2 234888352 234888381 chr2,234888352,234888381,+,(ATAA)n,Simple_repeat,Simple_repeat,1,29,0,234888352,234888381 -6 + chr2 234888389 234888526 chr2,234888389,234894419,+,L1PA2,LINE,L1,124,6155,0,234888266,234894419 -1 + chr2 234888649 234888802 chr2,234888389,234894419,+,L1PA2,LINE,L1,124,6155,0,234888266,234894419 -1 + chr2 234907458 234907575 chr2,234907301,234907597,+,AluSc8,SINE,Alu,1,296,-15,234907301,234907612 -3 + chr2 234913261 234913384 chr2,234912885,234913951,-,Tigger2b_Pri,DNA,TcMar-Tigger,0,1068,1,234912885,234913951 +1 - chr2 235084822 235085161 chr2,235084755,235085161,+,MLT1G,LTR,ERVL-MaLR,128,595,0,235084628,235085161 -5 + chr2 235085600 235085692 chr2,235085396,235085768,+,THE1D,LTR,ERVL-MaLR,1,381,0,235085396,235085768 -3 + chr2 235177896 235178065 chr2,235177672,235178359,-,Charlie24,DNA,hAT-Charlie,-307,2143,1402,235177365,235179760 -1 - chr2 235178774 235178870 chr2,235178774,235178870,+,MIRc,SINE,MIR,169,268,0,235178606,235178870 +6 + chr2 235775657 235775765 chr2,235775636,235775765,+,AmnSINE1,SINE,5S-Deu-L2,299,424,-151,235775338,235775916 -4 + chr2 236213755 236213866 chr2,236213755,236213866,+,MIRc,SINE,MIR,90,216,-52,236213666,236213918 +6 + chr2 236213878 236214064 chr2,236213878,236214064,-,MARNA,DNA,TcMar-Mariner,-290,296,89,236213588,236214152 -6 - chr2 236214126 236214225 chr2,236214126,236214276,+,MER5A1,DNA,hAT-Charlie,1,159,-7,236214126,236214283 +5 + chr2 236277380 236277417 chr2,236277380,236277417,+,A-rich,Low_complexity,Low_complexity,1,37,0,236277380,236277417 +6 + chr2 236367591 236367613 chr2,236367591,236367613,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,236367591,236367613 +6 + chr2 236391074 236391131 chr2,236390811,236391131,-,L1M3e,LINE,L1,-6667,363,50,236384144,236391180 -1 - chr2 236391169 236391468 chr2,236391169,236391477,+,MamRep605,LTR?,LTR?,66,390,-459,236391104,236391936 +4 + chr2 236733520 236733582 chr2,236733520,236734058,-,L3,LINE,CR1,-245,3854,3258,236733275,236737315 -4 - chr2 236752647 236752831 chr2,236752647,236752971,+,MER102c,DNA,hAT-Charlie,12,328,-3,236752636,236752974 +5 + chr2 236753758 236753835 chr2,236753758,236753835,-,Plat_L3,LINE,CR1,-1096,2490,2414,236752662,236756248 -6 - chr2 237048599 237048697 chr2,237048445,237048697,+,L1ME3Cz,LINE,L1,338,543,-454,237048108,237049151 -5 + chr2 237048634 237048966 chr2,237048634,237050186,-,L1MEc,LINE,L1,-4669,1731,45,237043965,237050230 +2 - chr2 237049412 237050180 chr2,237048634,237050186,-,L1MEc,LINE,L1,-4669,1731,45,237043965,237050230 +3 - chr2 237050991 237051021 chr2,237050991,237051021,+,(GT)n,Simple_repeat,Simple_repeat,1,30,0,237050991,237051021 -6 + chr2 237054447 237054479 chr2,237054447,237054479,+,(TGC)n,Simple_repeat,Simple_repeat,1,32,0,237054447,237054479 -6 + chr2 237055000 237055019 chr2,237054646,237055019,+,Charlie5,DNA,hAT-Charlie,2238,2619,-5,237052409,237055024 -4 + chr2 237056047 237056167 chr2,237055933,237056390,-,L4_B_Mam,LINE,RTE-X,-3026,1915,1410,237052907,237057799 +1 - chr2 237084156 237084515 chr2,237084052,237084515,-,MLT2A1,LTR,ERVL,0,444,2,237084052,237084516 +4 - chr2 237084515 237085058 chr2,237084515,237085058,+,MER45B,DNA,hAT-Tip100,453,1039,-1,237084063,237085059 -6 + chr2 237085222 237085359 chr2,237085222,237085359,-,L2,LINE,L2,-544,2875,2754,237084678,237088112 +6 - chr2 237085498 237085571 chr2,237085498,237085571,-,L2b,LINE,L2,-13,3362,3288,237085485,237088858 +6 - chr2 237123165 237123291 chr2,237123165,237123291,+,L1M7,LINE,L1,2407,2537,-3609,237120759,237126900 -6 + chr2 237124053 237124097 chr2,237123788,237124183,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,237123788,237124183 -1 + chr2 237421534 237421623 chr2,237421534,237421623,-,L2a,LINE,L2,-1,3425,3337,237421533,237424959 +6 - chr2 237421794 237421840 chr2,237421794,237421905,+,HAL1,LINE,L1,276,393,-2114,237421519,237424019 -2 + chr2 237422183 237422233 chr2,237422183,237422634,-,MLT1C,LTR,ERVL-MaLR,0,467,1,237422183,237422634 +2 - chr2 237429119 237429198 chr2,237429119,237429294,-,MIR3,SINE,MIR,-4,204,21,237429115,237429314 +2 - chr2 237433061 237433156 chr2,237433039,237433227,+,OldhAT1,DNA,hAT-Ac,1756,1947,-901,237431284,237434128 -3 + chr2 237591872 237591969 chr2,237591839,237591969,+,LTR81A,LTR,Gypsy,22,142,-1208,237591818,237593177 +2 + chr2 237591969 237592031 chr2,237591969,237592264,+,AluSz,SINE,Alu,7,310,-2,237591963,237592266 +5 + chr2 237595683 237595981 chr2,237595683,237595981,+,AluSx,SINE,Alu,6,306,-6,237595678,237595987 +5 + chr2 237624954 237625289 chr2,237624954,237625289,+,MLT1A0,LTR,ERVL-MaLR,2,365,0,237624953,237625289 +6 + chr2 237625897 237625982 chr2,237625897,237625982,+,L2b,LINE,L2,3260,3346,-29,237622638,237626011 +6 + chr2 237626185 237626281 chr2,237626185,237626281,-,L2a,LINE,L2,-4,3422,3324,237626181,237629604 -6 - chr2 237626491 237626525 chr2,237626491,237626534,+,L1ME4a,LINE,L1,5977,6019,-105,237620515,237626639 +5 + chr2 238153194 238153305 chr2,238153194,238153305,-,LTR33,LTR,ERVL,-47,468,347,238153147,238153651 +6 - chr2 238153367 238153568 chr2,238153367,238153568,-,LTR33,LTR,ERVL,-256,259,45,238153111,238153612 +6 - chr2 238154186 238154580 chr2,238154186,238154580,+,MSTB,LTR,ERVL-MaLR,1,426,0,238154186,238154580 -6 + chr2 238155241 238155378 chr2,238155241,238155378,+,MIRc,SINE,MIR,24,177,-53,238155218,238155431 -6 + chr2 238224552 238224710 chr2,238224345,238224710,+,L1ME2z,LINE,L1,5997,6390,-54,238218349,238224764 -5 + chr2 238225113 238225246 chr2,238225057,238225246,-,LTR75,LTR,ERVL,0,562,354,238225057,238225599 +5 - chr2 238225390 238225425 chr2,238225390,238225425,-,LTR75,LTR,ERVL,-502,60,26,238224888,238225450 +6 - chr2 238225839 238226334 chr2,238225839,238226334,+,MLT1F2,LTR,ERVL-MaLR,1,554,-6,238225839,238226340 -6 + chr2 238226446 238226478 chr2,238226446,238226478,+,(CCCTGT)n,Simple_repeat,Simple_repeat,1,33,0,238226446,238226478 -6 + chr2 238229399 238229668 chr2,238229399,238229712,-,L2,LINE,L2,-863,2556,2210,238228536,238231921 +2 - chr2 238231201 238231237 chr2,238231178,238231237,+,L2b,LINE,L2,3303,3368,-19,238227876,238231256 -4 + chr2 238231382 238231426 chr2,238231382,238231426,+,(CGCCCCG)n,Simple_repeat,Simple_repeat,1,45,0,238231382,238231426 -6 + chr2 238231774 238231806 chr2,238231774,238231806,+,(AAAC)n,Simple_repeat,Simple_repeat,1,33,0,238231774,238231806 +6 + chr2 238235931 238236093 chr2,238235130,238236093,-,L2,LINE,L2,-773,2646,1566,238234357,238237658 -2 - chr2 238236111 238236548 chr2,238236111,238236548,+,MLT1D,LTR,ERVL-MaLR,31,505,0,238236081,238236548 +6 + chr2 238247225 238247517 chr2,238247094,238247589,+,MLT1F1,LTR,ERVL-MaLR,6,569,0,238247089,238247589 +3 + chr2 238254774 238254801 chr2,238254620,238254801,+,MER91A,DNA,hAT-Tip100,1,195,-1,238254620,238254802 +2 + chr2 238299882 238299955 chr2,238299882,238299955,+,OldhAT1,DNA,hAT-Ac,2224,2297,-551,238297659,238300506 -6 + chr2 238299957 238300152 chr2,238299957,238300152,+,ERV3-16A3_I-int,LTR,ERVL,848,1050,-4176,238299110,238304328 -6 + chr2 238300152 238300188 chr2,238300152,238300302,-,MER63B,DNA,hAT-Blackjack,0,436,293,238300152,238300594 +2 - chr2 238300577 238300620 chr2,238300577,238300748,-,L4_A_Mam,LINE,RTE-X,-1188,3802,3619,238299389,238304366 +1 - chr2 238511916 238511946 chr2,238511916,238512137,+,MLT1D,LTR,ERVL-MaLR,58,304,-163,238511859,238512300 -2 + chr2 238551533 238551547 chr2,238551533,238551957,+,L1M6,LINE,L1,1561,1983,-4513,238549973,238556470 -2 + chr2 238554483 238554778 chr2,238554483,238554778,-,MLT1A0,LTR,ERVL-MaLR,0,365,19,238554483,238554796 +6 - chr2 238740382 238740500 chr2,238740382,238740500,-,Zaphod,DNA,hAT-Tip100,0,4031,3896,238740382,238744395 -6 - chr2 238740611 238740780 chr2,238740611,238741256,+,L1ME1,LINE,L1,5441,6103,-76,238735171,238741332 +5 + chr2 238919728 238919779 chr2,238919672,238919779,-,MIRb,SINE,MIR,-112,156,34,238919560,238919812 +4 - chr2 238921383 238921476 chr2,238921305,238921696,+,MLT2D,LTR,ERVL,1,414,0,238921305,238921696 -3 + chr2 238921610 238921696 chr2,238921305,238921696,+,MLT2D,LTR,ERVL,1,414,0,238921305,238921696 -4 + chr2 238922207 238922338 chr2,238922207,238922648,+,MLT1B,LTR,ERVL-MaLR,1,390,0,238922207,238922648 -2 + chr2 238923229 238923525 chr2,238923229,238923525,+,AluJb,SINE,Alu,1,287,-25,238923229,238923550 -6 + chr2 239578371 239578718 chr2,239578371,239578718,-,MLT2B1,LTR,ERVL,-1,566,120,239578370,239578837 -6 - chr2 239583303 239583341 chr2,239583303,239583341,+,(GCACCT)n,Simple_repeat,Simple_repeat,1,38,0,239583303,239583341 +6 + chr2 239585352 239585538 chr2,239585352,239585538,-,L2c,LINE,L2,-128,3247,3045,239585224,239588582 -6 - chr2 239586055 239586094 chr2,239586055,239586154,-,MamRep1151,LTR?,LTR?,-231,478,387,239585824,239586540 -5 - chr2 239800130 239800257 chr2,239800130,239800257,+,MIRc,SINE,MIR,37,170,-98,239800094,239800355 +6 + chr2 239800372 239800491 chr2,239800372,239800491,+,Merlin1_HS,DNA,Merlin,1052,1173,-2,239799321,239800493 +6 + chr2 239800522 239800973 chr2,239800522,239800973,+,LTR12_,LTR,ERV1,1,452,-236,239800522,239801209 +6 + chr2 239802755 239802883 chr2,239802755,239803081,+,AluSx1,SINE,Alu,1,311,-1,239802755,239803082 +5 + chr2 240255804 240255865 chr2,240255771,240255865,-,MIR3,SINE,MIR,-81,127,30,240255690,240255894 +4 - chr2 240449337 240449437 chr2,240449337,240449437,+,MER53,DNA,hAT,2,103,-90,240449336,240449527 -5 + chr2 240449537 240450054 chr2,240449537,240450054,-,L1MB3,LINE,L1,-9,6174,5649,240449528,240455702 +6 - chr2 240450065 240450136 chr2,240450065,240450136,+,MER53,DNA,hAT,112,184,-9,240449954,240450145 -6 + chr2 240450412 240450523 chr2,240450412,240450523,+,MIRb,SINE,MIR,53,195,-73,240450360,240450596 -6 + chr2 240450976 240451019 chr2,240450976,240451019,+,G-rich,Low_complexity,Low_complexity,1,43,0,240450976,240451019 -6 + chr2 240582700 240583115 chr2,240582680,240583115,-,MER51B,LTR,ERV1,0,377,2,240582680,240583116 +5 - chr2 240583115 240583221 chr2,240583115,240583221,+,MIRb,SINE,MIR,77,188,-80,240583039,240583301 -6 + chr2 240584103 240584142 chr2,240584103,240584142,-,MSTA1,LTR,ERVL-MaLR,0,465,422,240584103,240584563 +6 - chr2 240584142 240584467 chr2,240584142,240584467,-,AluY,SINE,Alu,-1,310,1,240584141,240584467 +6 - chr2 240584467 240584856 chr2,240584467,240584856,-,MSTA1,LTR,ERVL-MaLR,-44,421,1,240584423,240584856 +6 - chr2 240686334 240686514 chr2,240685606,240686514,-,MER49,LTR,ERV1,0,923,5,240685606,240686518 -1 - chr2 240686514 240687018 chr2,240686514,240687018,-,L1ME2z,LINE,L1,-823,5621,5065,240685691,240692082 -6 - chr2 240687019 240687386 chr2,240687019,240687386,+,MLT2B1,LTR,ERVL,100,520,0,240686920,240687386 +6 + chr2 240688963 240689149 chr2,240688963,240689149,+,MER49,LTR,ERV1,736,923,0,240688228,240689149 +6 + chr2 240689165 240689387 chr2,240689165,240689387,+,L1ME2z,LINE,L1,5636,5866,-298,240683530,240689685 +6 + chr2 240690401 240690414 chr2,240690401,240690488,+,MIR1_Amn,SINE,MIR,66,152,-78,240690336,240690566 +5 + chr2 240954617 240954830 chr2,240954244,240954830,-,MER21C,LTR,ERVL,-123,815,199,240954121,240955028 +5 - chr2 240955051 240955360 chr2,240955051,240955360,-,L1ME4b,LINE,L1,-2122,5760,5580,240952929,240960939 +6 - chr2 240963989 240964127 chr2,240963948,240964127,-,L2b,LINE,L2,-52,3323,3131,240963896,240967257 +4 - chr2 241015599 241015651 chr2,241015005,241015651,-,L1MA9,LINE,L1,-1389,4757,4094,241013616,241019744 +5 - chr2 241015757 241016017 chr2,241015757,241016062,-,L1MA9,LINE,L1,-2003,4143,3825,241013754,241019886 +2 - chr2 241351340 241351401 chr2,241351302,241351401,-,L1ME3B,LINE,L1,-17,6225,6126,241351285,241357526 +5 - chr2 241351411 241351531 chr2,241351411,241351531,-,MIRb,SINE,MIR,-56,212,95,241351355,241351625 +6 - chr2 241544403 241544631 chr2,241544365,241544631,+,MER44A,DNA,TcMar-Tigger,88,330,-9,241544278,241544640 -5 + chr2 241544694 241544844 chr2,241544694,241545219,-,MLT1D,LTR,ERVL-MaLR,-6,499,1,241544688,241545219 +2 - chr2 241558856 241558889 chr2,241558856,241558889,+,(GGGCG)n,Simple_repeat,Simple_repeat,1,33,0,241558856,241558889 -6 + chr2 241581922 241582019 chr2,241581810,241582019,+,MER2,DNA,TcMar-Tigger,132,345,0,241581679,241582019 +1 + chr2 241582096 241582726 chr2,241582096,241582808,+,L1MC5a,LINE,L1,1704,2504,-273,241580393,241583081 +5 + chr2 241694161 241694289 chr2,241694161,241694455,+,AluY,SINE,Alu,1,294,-17,241694161,241694472 +5 + chr2 241754793 241754851 chr2,241754601,241754902,-,AluJr,SINE,Alu,-8,304,1,241754593,241754902 +5 - chr2 241800916 241800941 chr2,241800216,241800941,-,MER49,LTR,ERV1,0,923,185,241800216,241801125 +5 - chr2 241800941 241801355 chr2,241800941,241801355,-,L1PA8,LINE,L1,0,6172,5760,241800941,241807114 +6 - chr2 241801355 241801388 chr2,241801355,241801520,-,MER49,LTR,ERV1,-739,184,5,241800616,241801524 +2 - chr2 241808312 241808863 chr2,241808248,241808863,-,PABL_A,LTR,ERV1,-1,659,4,241808247,241808866 +5 - chr2 241808863 241808907 chr2,241808863,241808907,+,L1MEj,LINE,L1,972,1010,-1150,241807892,241810057 -6 + chr2 241809725 241809797 chr2,241809725,241809797,-,MER102b,DNA,hAT-Charlie,-178,163,64,241809547,241809860 +6 - chr2 241810990 241811016 chr2,241810990,241811016,+,(CTGTG)n,Simple_repeat,Simple_repeat,1,26,0,241810990,241811016 -6 + chr2 241844565 241844793 chr2,241844540,241844793,-,AluJr,SINE,Alu,-11,301,34,241844529,241844826 -2 - chr2 241882583 241882635 chr2,241882583,241882709,-,L1MEf,LINE,L1,-693,5458,5334,241881890,241888042 -4 - chr2 241934042 241934210 chr2,241934042,241934345,-,AluSc,SINE,Alu,-6,303,1,241934036,241934345 -4 - chr2 241958908 241958933 chr2,241958908,241959018,+,MER65D,LTR,ERV1,1,123,-350,241958908,241959368 +5 + chr2 241965927 241965944 chr2,241965132,241965944,+,LTR49-int,LTR,ERV1,4296,5089,-1242,241960837,241967186 +2 + chr2 241965949 241966235 chr2,241965949,241966235,+,MER65D,LTR,ERV1,162,444,-1,241965788,241966236 +5 + chr2 241966342 241966440 chr2,241966342,241966701,-,L1MEf,LINE,L1,-898,5546,5139,241965444,241971839 -5 - chr2 241970683 241971299 chr2,241970680,241971299,+,LTR71B,LTR,ERV1,1,610,0,241970680,241971299 +1 + chr2 241971478 241971493 chr2,241971478,241971791,+,MLT1A0,LTR,ERVL-MaLR,1,303,-62,241971478,241971853 +4 + chr2 241971680 241971791 chr2,241971478,241971791,+,MLT1A0,LTR,ERVL-MaLR,1,303,-62,241971478,241971853 +2 + chr2 241972276 241972556 chr2,241972276,241972639,+,THE1B,LTR,ERVL-MaLR,1,364,0,241972276,241972639 +4 + chr2 241976216 241976723 chr2,241976216,241976723,-,L1MC3,LINE,L1,-3,7782,7251,241976213,241983973 -6 - chr2 241976723 241977072 chr2,241976723,241977072,+,MER57E1,LTR,ERV1,1,372,0,241976723,241977072 +6 + chr2 241977072 241977276 chr2,241977072,241978030,-,L1MC3,LINE,L1,-535,7250,6259,241976537,241984288 -5 - chr2 242001209 242001422 chr2,242000976,242001422,-,L1M5,LINE,L1,-1478,4668,4177,241999498,242005598 -1 - chr2 242001403 242001641 chr2,242001403,242001641,-,L1M5,LINE,L1,-1129,5014,4771,242000274,242006411 -6 - chr2 242002348 242002497 chr2,242002348,242002497,+,HAL1ME,LINE,L1,933,1092,-1373,242001416,242003870 +6 + chr2 242002523 242002935 chr2,242002523,242002935,+,MSTA,LTR,ERVL-MaLR,1,428,0,242002523,242002935 +6 + chr2 242004633 242004972 chr2,242004633,242004972,+,MLT2D,LTR,ERVL,1,366,-48,242004633,242005020 +6 + chr2 242025183 242025407 chr2,242025011,242025407,-,MLT2B4,LTR,ERVL,-127,403,277,242024884,242025683 +5 - chr2 242025548 242025585 chr2,242025548,242025766,+,MLT1K,LTR,ERVL-MaLR,377,594,-1,242025172,242025767 -2 + chr2 242047709 242047763 chr2,242047709,242049830,+,L1MB7,LINE,L1,2777,4754,-1890,242044933,242051720 -2 + chr2 242048058 242048283 chr2,242047709,242049830,+,L1MB7,LINE,L1,2777,4754,-1890,242044933,242051720 -3 + chr2 242060297 242060408 chr2,242059922,242060408,+,L1M5,LINE,L1,4312,4838,-1308,242055611,242061716 -4 + chr2 242084096 242084116 chr2,242084049,242084116,-,MIRc,SINE,MIR,-120,148,78,242083929,242084193 +4 - chr2 242087351 242087363 chr2,242087015,242087363,+,MER4CL34,LTR,ERV1,76,765,0,242086940,242087363 -5 + chr2 242087434 242087562 chr2,242087434,242087562,+,L1MC5a,LINE,L1,454,577,-2200,242086981,242089762 -6 + chr2 242087820 242087957 chr2,242087820,242087957,-,MIR,SINE,MIR,-7,255,111,242087813,242088067 +6 - chr20 267224 267417 chr20,267224,267417,+,HERVL74-int,LTR,ERVL,3071,3276,-2409,264154,269826 +6 + chr20 267433 267610 chr20,267433,267610,+,L1PB4,LINE,L1,5958,6154,-2,261476,267612 +6 + chr20 267812 268115 chr20,267812,268115,+,AluSx1,SINE,Alu,1,305,-7,267812,268122 +6 + chr20 268132 268166 chr20,268132,268166,+,(CATGTG)n,Simple_repeat,Simple_repeat,1,36,0,268132,268166 +6 + chr20 268345 268857 chr20,268345,268913,+,MER76,LTR,ERVL,6,619,-72,268340,268985 +5 + chr20 320434 320781 chr20,320434,320976,-,MLT1F1,LTR,ERVL-MaLR,0,569,21,320434,320996 +2 - chr20 322378 322511 chr20,322321,322511,+,L2a,LINE,L2,3215,3420,-6,319107,322517 -4 + chr20 1117923 1117988 chr20,1117923,1118094,+,MIR,SINE,MIR,68,252,-10,1117856,1118104 -2 + chr20 1186092 1186271 chr20,1186063,1186271,+,L2c,LINE,L2,3106,3326,-61,1182958,1186332 +1 + chr20 1186336 1186408 chr20,1186336,1186408,+,MER96,DNA,hAT-Tip100,1,72,-103,1186336,1186511 +6 + chr20 1321385 1321418 chr20,1321385,1321418,+,(CTGCTC)n,Simple_repeat,Simple_repeat,1,33,0,1321385,1321418 +6 + chr20 1321500 1321719 chr20,1321500,1321719,+,L2c,LINE,L2,2688,2918,-501,1318813,1322220 +6 + chr20 1321724 1322026 chr20,1321724,1322026,+,MER102a,DNA,hAT-Charlie,1,327,-3,1321724,1322029 +6 + chr20 1322028 1322433 chr20,1322028,1322433,+,L2c,LINE,L2,2928,3366,-21,1319101,1322454 +6 + chr20 1322568 1322870 chr20,1322568,1322870,-,AluJo,SINE,Alu,-9,303,1,1322559,1322870 -6 - chr20 1322873 1323116 chr20,1322873,1323116,+,MER102b,DNA,hAT-Charlie,70,322,-19,1322804,1323135 +6 + chr20 1323599 1323913 chr20,1323599,1323913,-,MER2,DNA,TcMar-Tigger,0,345,1,1323599,1323913 -6 - chr20 1323984 1324038 chr20,1323984,1324038,-,L2b,LINE,L2,-1,3374,3313,1323983,1327350 -6 - chr20 1324024 1324351 chr20,1324024,1324351,+,L2b,LINE,L2,3044,3375,0,1320981,1324351 +6 + chr20 1345169 1345286 chr20,1345021,1345286,+,MLT1F,LTR,ERVL-MaLR,1,270,-278,1345021,1345564 +2 + chr20 1345419 1345898 chr20,1345419,1347824,-,L1MC2,LINE,L1,-146,6198,3742,1345273,1351565 -5 - chr20 1361057 1361220 chr20,1361045,1361220,+,Charlie1a,DNA,hAT-Charlie,1076,1258,-197,1359970,1361417 +2 + chr20 1361221 1361586 chr20,1361221,1361586,+,HAL1,LINE,L1,1297,1647,-860,1359925,1362446 +6 + chr20 1361599 1361882 chr20,1361599,1361882,+,MLT1H,LTR,ERVL-MaLR,15,297,-252,1361585,1362134 +5 + chr20 1362422 1362529 chr20,1362422,1362529,+,L2,LINE,L2,2643,2757,-662,1359780,1363191 +6 + chr20 1362543 1362585 chr20,1362543,1362697,-,MLT1H1,LTR,ERVL-MaLR,0,489,296,1362543,1362992 -5 - chr20 1374484 1374698 chr20,1374427,1374825,+,L1ME4b,LINE,L1,155,567,-325,1374273,1375150 +3 + chr20 1378076 1378229 chr20,1378076,1378229,+,MLT1L,LTR,ERVL-MaLR,241,393,-217,1377836,1378446 +5 + chr20 1378322 1378705 chr20,1378322,1378705,+,L1MC1,LINE,L1,5939,6324,-9,1372384,1378714 +6 + chr20 1646036 1646092 chr20,1646031,1646092,-,MIR1_Amn,SINE,MIR,-58,172,109,1645973,1646200 -2 - chr20 1646634 1646946 chr20,1646634,1646946,-,AluSp,SINE,Alu,0,313,1,1646634,1646946 -6 - chr20 1647130 1647203 chr20,1647130,1647203,+,MIR,SINE,MIR,108,181,-81,1647023,1647284 +6 + chr20 1647481 1647746 chr20,1647481,1647746,+,L1ME4b,LINE,L1,312,599,-293,1647170,1648039 +6 + chr20 1647970 1648134 chr20,1647970,1648134,+,MIR3,SINE,MIR,41,200,-8,1647930,1648142 +6 + chr20 1810554 1810674 chr20,1809704,1810691,+,L2a,LINE,L2,2351,3425,-1,1807354,1810692 -3 + chr20 1888128 1888309 chr20,1887601,1888401,-,L2a,LINE,L2,-1,3425,2499,1887600,1890899 +5 - chr20 1889549 1889603 chr20,1889549,1889735,+,MER5A,DNA,hAT-Charlie,1,186,-3,1889549,1889738 -2 + chr20 1890081 1890154 chr20,1890081,1890154,-,L2a,LINE,L2,-8,3418,3340,1890073,1893493 +6 - chr20 1890166 1890281 chr20,1890166,1890281,-,MIR,SINE,MIR,-51,211,76,1890115,1890356 +5 - chr20 1890328 1890505 chr20,1890328,1890505,-,L2a,LINE,L2,-120,3306,3117,1890208,1893621 +6 - chr20 1890502 1890594 chr20,1890502,1890594,+,MIRb,SINE,MIR,115,212,-56,1890388,1890650 -6 + chr20 1891001 1891176 chr20,1891001,1891176,+,MIRb,SINE,MIR,27,222,-46,1890975,1891222 -6 + chr20 1894119 1894134 chr20,1894083,1894134,+,(CTTC)n,Simple_repeat,Simple_repeat,1,55,0,1894083,1894134 -4 + chr20 1894250 1894308 chr20,1894250,1894308,+,(CCCCCCG)n,Simple_repeat,Simple_repeat,1,59,0,1894250,1894308 -6 + chr20 1947629 1947651 chr20,1947629,1947824,-,MIRb,SINE,MIR,-41,227,8,1947588,1947831 -4 - chr20 1966258 1966343 chr20,1966258,1966349,-,LTR16A1,LTR,ERVL,-128,328,240,1966130,1966588 -4 - chr20 2664534 2664580 chr20,2664534,2664580,-,L2b,LINE,L2,-2,3373,3325,2664532,2667904 -6 - chr20 2665258 2665361 chr20,2665247,2665361,-,AluYc,SINE,Alu,-185,114,1,2665062,2665361 -2 - chr20 2665438 2665609 chr20,2665438,2665609,+,MER5A,DNA,hAT-Charlie,7,188,-1,2665432,2665610 +6 + chr20 3110697 3110717 chr20,3110697,3110854,+,FLAM_C,SINE,Alu,7,302,0,3110691,3110854 +4 + chr20 3111644 3111752 chr20,3111360,3111884,+,L2b,LINE,L2,2729,3370,-5,3108632,3111889 +3 + chr20 3239889 3239935 chr20,3239889,3239935,+,(CCCCTTT)n,Simple_repeat,Simple_repeat,1,46,0,3239889,3239935 +6 + chr20 3239998 3240033 chr20,3239998,3240033,+,(GCGCGT)n,Simple_repeat,Simple_repeat,1,35,0,3239998,3240033 +6 + chr20 3241440 3241733 chr20,3241440,3241733,+,AluJb,SINE,Alu,1,292,-20,3241440,3241753 +6 + chr20 3241736 3241762 chr20,3241736,3241762,+,L2,LINE,L2,1794,1817,-1602,3239943,3243364 +6 + chr20 3241762 3242067 chr20,3241762,3242067,+,AluSc,SINE,Alu,1,298,-11,3241762,3242078 +6 + chr20 3242067 3242217 chr20,3242067,3242217,+,L2,LINE,L2,1818,1988,-1431,3240250,3243648 +6 + chr20 3242229 3242266 chr20,3242229,3242266,+,A-rich,Low_complexity,Low_complexity,1,36,0,3242229,3242266 +6 + chr20 3242271 3242404 chr20,3242271,3242404,+,FLAM_A,SINE,Alu,2,130,-12,3242270,3242416 +6 + chr20 3242603 3242937 chr20,3242603,3242937,-,AluJb,SINE,Alu,-3,309,2,3242600,3242938 -6 - chr20 3242940 3243191 chr20,3242940,3243191,-,AluYh3,SINE,Alu,-8,303,51,3242932,3243241 -6 - chr20 3243191 3243249 chr20,3243191,3243249,-,AluSz6,SINE,Alu,-167,145,86,3243024,3243334 -6 - chr20 3243249 3243473 chr20,3243249,3243473,-,AluJo,SINE,Alu,-92,220,1,3243157,3243473 -6 - chr20 3243476 3243666 chr20,3243476,3243666,-,AluJb,SINE,Alu,0,312,121,3243476,3243786 -6 - chr20 3244076 3244320 chr20,3244076,3244320,-,AluJr,SINE,Alu,-17,295,59,3244059,3244378 -6 - chr20 3808515 3808602 chr20,3808515,3808804,-,L1ME3,LINE,L1,-80,6082,5780,3808435,3814583 -4 - chr20 3809897 3810014 chr20,3809859,3810182,-,AluJo,SINE,Alu,0,312,2,3809859,3810183 -3 - chr20 3812333 3812434 chr20,3812333,3812476,+,MIR,SINE,MIR,82,225,-37,3812252,3812513 +5 + chr20 3888239 3888384 chr20,3888229,3888384,-,AluSp,SINE,Alu,-6,307,133,3888223,3888516 +5 - chr20 3921709 3921869 chr20,3921709,3922008,-,AluSz,SINE,Alu,-11,301,1,3921698,3922008 +2 - chr20 4070152 4070274 chr20,4069962,4070387,-,MLT2D,LTR,ERVL,0,414,3,4069962,4070389 +5 - chr20 4074767 4075048 chr20,4074767,4075048,+,L2,LINE,L2,2353,2627,-792,4072415,4075840 -6 + chr20 4075063 4075139 chr20,4075063,4075139,+,L2,LINE,L2,2709,2781,-638,4072355,4075777 -6 + chr20 4431214 4431421 chr20,4431214,4431421,-,L1ME5,LINE,L1,-154,6040,5820,4431060,4437240 +6 - chr20 4431435 4431497 chr20,4431435,4431594,+,Charlie15a,DNA,hAT-Charlie,1,161,-63,4431435,4431657 -2 + chr20 4525074 4525095 chr20,4524871,4525095,+,MER58A,DNA,hAT-Charlie,1,224,0,4524871,4525095 +2 + chr20 4761588 4761696 chr20,4761588,4762289,+,MER44C,DNA,TcMar-Tigger,13,730,-3,4761576,4762292 +5 + chr20 5045888 5046276 chr20,5045888,5046506,+,L1M3,LINE,L1,3834,4403,-1737,5042055,5048243 -1 + chr20 5049857 5049919 chr20,5049838,5049919,-,MLT1J,LTR,ERVL-MaLR,-35,477,391,5049803,5050309 +5 - chr20 5050177 5050243 chr20,5050177,5050243,-,L1M6,LINE,L1,-5300,1196,1130,5044877,5051372 +6 - chr20 5061253 5061340 chr20,5061253,5061344,-,MER117,DNA,hAT-Charlie,-48,149,64,5061205,5061407 +1 - chr20 5067209 5067323 chr20,5066967,5067323,-,LTR16E1,LTR,ERVL,0,538,154,5066967,5067476 +4 - chr20 5067967 5068065 chr20,5067762,5068065,-,AluJb,SINE,Alu,-15,297,1,5067747,5068065 +4 - chr20 5068066 5068154 chr20,5068066,5068327,-,MLT1J,LTR,ERVL-MaLR,-154,358,89,5067912,5068415 +1 - chr20 5407564 5407708 chr20,5407558,5407708,+,MIRc,SINE,MIR,76,255,-13,5407483,5407721 +1 + chr20 5407794 5407876 chr20,5407794,5407877,+,(AATG)n,Simple_repeat,Simple_repeat,1,85,0,5407794,5407877 +5 + chr20 5427059 5427216 chr20,5427059,5427350,+,LTR79,LTR,ERVL,108,456,-71,5426952,5427421 -2 + chr20 5428502 5428538 chr20,5428502,5428713,-,MER63A,DNA,hAT-Blackjack,0,210,1,5428502,5428713 +2 - chr20 5428629 5428713 chr20,5428502,5428713,-,MER63A,DNA,hAT-Blackjack,0,210,1,5428502,5428713 +4 - chr20 5432043 5432218 chr20,5432043,5432218,-,MIRb,SINE,MIR,-70,198,10,5431973,5432227 +6 - chr20 5432494 5432613 chr20,5432494,5432613,-,MIRb,SINE,MIR,-114,154,13,5432380,5432625 +1 - chr20 5437100 5437273 chr20,5436978,5437561,-,L1MC3,LINE,L1,-846,6939,6397,5436132,5443957 +3 - chr20 5438210 5438315 chr20,5438040,5438339,+,AluSx1,SINE,Alu,1,299,-13,5438040,5438352 -3 + chr20 5445504 5445746 chr20,5445444,5445928,-,MLT1F,LTR,ERVL-MaLR,-13,535,1,5445431,5445928 +1 - chr20 5463760 5463827 chr20,5458531,5463827,-,L1PA8,LINE,L1,-1101,5230,9,5457430,5463835 +4 - chr20 5464787 5464929 chr20,5464476,5465728,+,LTR2752,LTR,ERV1,1,1263,0,5464476,5465728 -3 + chr20 5472744 5472834 chr20,5472744,5472846,-,L2,LINE,L2,-2111,1308,1212,5470633,5474057 -4 - chr20 5475056 5475170 chr20,5475056,5475170,+,MIR,SINE,MIR,45,166,-96,5475012,5475266 +6 + chr20 5496067 5496405 chr20,5495939,5496405,-,MER51E,LTR,ERV1,0,482,1,5495939,5496405 +5 - chr20 5497442 5497749 chr20,5497442,5497749,-,LTR16B2,LTR,ERVL,-10,452,113,5497432,5497861 +6 - chr20 5499023 5499119 chr20,5499023,5499119,+,MIRc,SINE,MIR,57,152,-116,5498967,5499235 -1 + chr20 5500343 5500452 chr20,5500343,5500452,-,MIR,SINE,MIR,-64,144,34,5500279,5500485 +6 - chr20 5502804 5502881 chr20,5502804,5502881,-,ORSL,DNA,hAT-Tip100,-1,274,199,5502803,5503079 -5 - chr20 5502903 5503083 chr20,5502881,5503189,+,AluY,SINE,Alu,2,311,0,5502880,5503189 -3 + chr20 5533628 5533644 chr20,5533419,5533644,+,MER33,DNA,hAT-Charlie,76,279,-45,5533344,5533689 +1 + chr20 5533644 5533694 chr20,5533644,5533890,+,AluJb,SINE,Alu,2,247,-65,5533643,5533955 +4 + chr20 5535691 5535800 chr20,5535691,5535800,+,AluJr,SINE,Alu,1,118,-194,5535691,5535994 +6 + chr20 5993856 5993924 chr20,5993856,5994016,+,MIRc,SINE,MIR,69,239,-29,5993788,5994045 -2 + chr20 6000418 6000690 chr20,6000379,6000690,+,AluJr,SINE,Alu,2,296,-16,6000378,6000706 +1 + chr20 6000521 6000675 chr20,6000379,6000690,+,AluJr,SINE,Alu,2,296,-16,6000378,6000706 -1 + chr20 6001276 6001397 chr20,6001068,6001400,-,MER1B,DNA,hAT-Charlie,0,339,1,6001068,6001400 +3 - chr20 6066426 6066509 chr20,6066426,6066509,+,MARNA,DNA,TcMar-Mariner,129,205,-381,6066298,6066890 -6 + chr20 6066509 6066534 chr20,6066509,6066534,+,(CA)n,Simple_repeat,Simple_repeat,1,25,0,6066509,6066534 -6 + chr20 6066534 6066751 chr20,6066534,6066751,+,MARNA,DNA,TcMar-Mariner,206,442,-144,6066329,6066895 -6 + chr20 6066992 6067087 chr20,6066992,6067087,-,MLT1L,LTR,ERVL-MaLR,-2,608,512,6066990,6067598 +6 - chr20 6067085 6067239 chr20,6067085,6067239,-,MLT1L,LTR,ERVL-MaLR,-319,291,138,6066766,6067376 +6 - chr20 6067355 6067413 chr20,6067355,6067413,-,MLT1L,LTR,ERVL-MaLR,-546,64,1,6066809,6067413 +6 - chr20 6067487 6067788 chr20,6067487,6067788,+,AluJb,SINE,Alu,1,301,-11,6067487,6067799 -6 + chr20 6446729 6446788 chr20,6446729,6446788,-,LFSINE_Vert,SINE,tRNA,-199,260,200,6446530,6446987 -6 - chr20 6527194 6527305 chr20,6526986,6527305,-,AluSc,SINE,Alu,0,309,1,6526986,6527305 -2 - chr20 6527305 6527804 chr20,6527305,6527804,-,L1ME4a,LINE,L1,-255,5869,5331,6527050,6533134 -6 - chr20 6528004 6528126 chr20,6528004,6528126,+,AluJr,SINE,Alu,3,123,-189,6528002,6528315 +6 + chr20 6528133 6528210 chr20,6528133,6528210,-,FLAM_C,SINE,Alu,-65,68,3,6528068,6528212 -6 - chr20 6731258 6731277 chr20,6731252,6731277,+,(TTTA)n,Simple_repeat,Simple_repeat,1,25,0,6731252,6731277 -5 + chr20 6735909 6735966 chr20,6735909,6735966,+,(TC)n,Simple_repeat,Simple_repeat,1,58,0,6735909,6735966 -6 + chr20 7069614 7069694 chr20,7069593,7069827,-,LTR67B,LTR,ERVL,-288,332,80,7069305,7069906 -1 - chr20 7146417 7146458 chr20,7146417,7146458,+,A-rich,Low_complexity,Low_complexity,1,42,0,7146417,7146458 +6 + chr20 7148001 7148166 chr20,7147919,7148166,-,MIR,SINE,MIR,-1,267,6,7147918,7148171 +4 - chr20 7183343 7183393 chr20,7183108,7183473,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,7183108,7183473 -3 + chr20 7303367 7303518 chr20,7303367,7303518,+,MER53,DNA,hAT,21,187,-6,7303347,7303524 -6 + chr20 7303524 7303634 chr20,7303524,7303634,-,MER5B,DNA,hAT-Charlie,-72,106,2,7303452,7303635 +6 - chr20 7303657 7303713 chr20,7303657,7303713,+,(AC)n,Simple_repeat,Simple_repeat,1,57,0,7303657,7303713 -6 + chr20 7307359 7307432 chr20,7307137,7307805,+,MER44D,DNA,TcMar-Tigger,1,705,0,7307137,7307805 -1 + chr20 8020391 8020410 chr20,8020317,8020410,+,MIR3,SINE,MIR,107,203,-5,8020211,8020415 +2 + chr20 8020928 8021106 chr20,8020928,8021106,+,L1MC5a,LINE,L1,2586,2772,-5,8018343,8021111 +6 + chr20 8022059 8022155 chr20,8021868,8022239,+,THE1B,LTR,ERVL-MaLR,1,364,0,8021868,8022239 +3 + chr20 8022403 8022449 chr20,8022403,8022906,+,MLT1F2,LTR,ERVL-MaLR,1,546,-14,8022403,8022920 +1 + chr20 8022557 8022767 chr20,8022403,8022906,+,MLT1F2,LTR,ERVL-MaLR,1,546,-14,8022403,8022920 +1 + chr20 8027661 8027956 chr20,8027451,8028003,+,MLT1E1A,LTR,ERVL-MaLR,1,635,-19,8027451,8028022 +5 + chr20 8040184 8040352 chr20,8039831,8040806,-,L1MC4a,LINE,L1,-10,7872,6835,8039821,8047640 -3 - chr20 9505229 9505316 chr20,9505229,9505316,-,MIR,SINE,MIR,-77,185,99,9505152,9505414 +6 - chr20 9505508 9505637 chr20,9505508,9505637,-,MER5B,DNA,hAT-Charlie,-9,169,36,9505499,9505672 +6 - chr20 9505740 9505878 chr20,9505740,9505878,-,MER5A1,DNA,hAT-Charlie,-1,165,11,9505739,9505888 +6 - chr20 9507085 9507107 chr20,9507085,9507107,+,(CGC)n,Simple_repeat,Simple_repeat,1,22,0,9507085,9507107 -6 + chr20 10022111 10022225 chr20,10022111,10022225,+,L2a,LINE,L2,2526,2673,-746,10019586,10022971 -6 + chr20 10022341 10022462 chr20,10022341,10022479,-,MLT1H,LTR,ERVL-MaLR,-97,452,266,10022244,10022744 +2 - chr20 10025053 10025158 chr20,10025053,10025158,-,MLT1L,LTR,ERVL-MaLR,0,610,493,10025053,10025650 +6 - chr20 10025417 10025913 chr20,10025417,10025913,+,L1ME3E,LINE,L1,944,1400,-760,10024474,10026673 -5 + chr20 10025916 10026064 chr20,10025916,10026064,+,7SLRNA,srpRNA,srpRNA,1,148,-172,10025916,10026236 -6 + chr20 10026066 10026168 chr20,10026066,10026168,+,7SLRNA,srpRNA,srpRNA,197,299,-21,10025870,10026189 -5 + chr20 10026171 10026202 chr20,10026171,10026202,+,(AAAC)n,Simple_repeat,Simple_repeat,1,31,0,10026171,10026202 -6 + chr20 10026293 10026346 chr20,10026293,10026346,-,MIR,SINE,MIR,-50,212,158,10026243,10026503 +6 - chr20 10026346 10026651 chr20,10026346,10026814,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,10026346,10026814 +1 - chr20 10103727 10103849 chr20,10103482,10103849,-,MLT1B,LTR,ERVL-MaLR,0,390,12,10103482,10103860 +5 - chr20 10104124 10104394 chr20,10104124,10104619,-,MLT1G1,LTR,ERVL-MaLR,-2,577,3,10104122,10104621 +5 - chr20 10180235 10180245 chr20,10180190,10180245,-,LTR81A,LTR,Gypsy,-192,1158,1127,10179998,10181371 -1 - chr20 10181690 10181748 chr20,10181690,10181748,-,MLT1L,LTR,ERVL-MaLR,-409,201,146,10181281,10181893 -6 - chr20 10185724 10185775 chr20,10185724,10186169,-,MLT1H,LTR,ERVL-MaLR,-5,544,36,10185719,10186204 -5 - chr20 10196867 10196990 chr20,10196729,10197060,-,MLT1J2,LTR,ERVL-MaLR,0,448,84,10196729,10197143 -5 - chr20 10196818 10196937 chr20,10196729,10197060,-,MLT1J2,LTR,ERVL-MaLR,0,448,84,10196729,10197143 +5 - chr20 10198753 10198812 chr20,10198611,10198812,-,MER3,DNA,hAT-Charlie,-2,207,5,10198609,10198816 +4 - chr20 10219527 10219591 chr20,10219527,10219591,+,G-rich,Low_complexity,Low_complexity,1,65,0,10219527,10219591 -6 + chr20 10368715 10368776 chr20,10368695,10368825,-,MER5A1,DNA,hAT-Charlie,0,166,35,10368695,10368859 +1 - chr20 10753906 10753966 chr20,10753906,10754057,-,MamTip1,DNA,hAT-Tip100,-60,207,49,10753846,10754105 -5 - chr20 10765170 10765286 chr20,10765169,10765516,+,MER1B,DNA,hAT-Charlie,1,339,0,10765169,10765516 -1 + chr20 10875356 10875903 chr20,10875356,10875903,+,MLT1H,LTR,ERVL-MaLR,1,549,0,10875356,10875903 -6 + chr20 10894616 10894687 chr20,10894582,10894687,+,MamTip2,DNA,hAT-Tip100,41,152,-153,10894542,10894840 -4 + chr20 10894752 10894862 chr20,10894752,10895153,-,L2b,LINE,L2,-1,3374,2948,10894751,10898100 +2 - chr20 10896018 10896130 chr20,10896018,10896130,+,LTR16A1,LTR,ERVL,1,112,-344,10896018,10896474 -6 + chr20 10896116 10896352 chr20,10896116,10896352,+,LTR16A1,LTR,ERVL,214,456,0,10895903,10896352 -6 + chr20 10902284 10902302 chr20,10902230,10902383,-,MIR,SINE,MIR,-85,177,8,10902145,10902390 -1 - chr20 10908826 10908853 chr20,10908436,10908853,+,BLACKJACK,DNA,hAT-Blackjack,2526,2968,-1,10905911,10908854 +2 + chr20 10909156 10909289 chr20,10909001,10909373,+,MLT1J2,LTR,ERVL-MaLR,50,448,0,10908952,10909373 +1 + chr20 10909001 10909272 chr20,10909001,10909373,+,MLT1J2,LTR,ERVL-MaLR,50,448,0,10908952,10909373 -1 + chr20 10913008 10913160 chr20,10912927,10913284,+,MLT1F,LTR,ERVL-MaLR,1,388,-160,10912927,10913444 +3 + chr20 10914404 10914535 chr20,10914175,10914573,+,MLT1A,LTR,ERVL-MaLR,1,366,-8,10914175,10914581 +5 + chr20 10987464 10987499 chr20,10987349,10987499,+,MIRb,SINE,MIR,17,160,-108,10987333,10987607 +2 + chr20 10988105 10988173 chr20,10987964,10988624,-,L1ME3A,LINE,L1,-298,5875,5197,10987666,10993820 -3 - chr20 10991598 10991935 chr20,10991522,10992013,+,MLT1H,LTR,ERVL-MaLR,1,549,0,10991522,10992013 +5 + chr20 10994816 10994924 chr20,10994816,10994966,-,MIR3,SINE,MIR,-4,204,30,10994812,10994995 -5 - chr20 11001304 11001608 chr20,11001082,11001608,-,L1ME3A,LINE,L1,-10,6163,5600,11001072,11007207 -1 - chr20 11270354 11270564 chr20,11270354,11270564,-,LTR16C,LTR,ERVL,0,489,276,11270354,11270839 +6 - chr20 11271205 11271283 chr20,11271176,11271359,-,MIRb,SINE,MIR,-57,211,1,11271119,11271359 +3 - chr20 11286662 11286779 chr20,11286267,11286939,-,L1MC5a,LINE,L1,-215,2562,2043,11286052,11288981 +3 - chr20 11685144 11685517 chr20,11684888,11685517,+,L1ME2,LINE,L1,5436,6043,-121,11679453,11685638 -5 + chr20 11685517 11685834 chr20,11685517,11685834,-,AluSx,SINE,Alu,-9,303,1,11685508,11685834 +6 - chr20 11685834 11685948 chr20,11685834,11685948,+,L1ME2,LINE,L1,6044,6159,-5,11679791,11685953 -6 + chr20 11800463 11800633 chr20,11800326,11800633,+,L1MB7,LINE,L1,5570,5872,-312,11794757,11800945 -5 + chr20 11800633 11800911 chr20,11800633,11800940,+,AluY,SINE,Alu,1,307,-4,11800633,11800944 -2 + chr20 11809989 11810193 chr20,11809989,11810193,-,LTR16C,LTR,ERVL,-47,442,237,11809942,11810429 +5 - chr20 11849513 11849577 chr20,11849513,11849577,+,(TTCT)n,Simple_repeat,Simple_repeat,1,103,0,11849513,11849577 -6 + chr20 11849577 11849611 chr20,11849577,11849612,+,(TTCC)n,Simple_repeat,Simple_repeat,1,36,0,11849577,11849612 -1 + chr20 11909765 11909793 chr20,11909765,11909793,+,(CAAAA)n,Simple_repeat,Simple_repeat,1,28,0,11909765,11909793 -6 + chr20 11918379 11918405 chr20,11918379,11918405,+,(CAG)n,Simple_repeat,Simple_repeat,1,26,0,11918379,11918405 -6 + chr20 12316127 12316341 chr20,12315754,12316341,-,L1MD2,LINE,L1,0,6359,5747,12315754,12322087 +4 - chr20 12865202 12865614 chr20,12865157,12865614,-,LTR16B1,LTR,ERVL,-2,478,1,12865155,12865614 +5 - chr20 12892641 12892781 chr20,12892608,12892781,-,L2b,LINE,L2,0,3375,3199,12892608,12895979 +4 - chr20 12893274 12893411 chr20,12893274,12893411,+,MIR3,SINE,MIR,48,197,-11,12893227,12893422 -6 + chr20 12902308 12902420 chr20,12902146,12902438,+,AluJo,SINE,Alu,1,293,-19,12902146,12902457 -3 + chr20 12906995 12907116 chr20,12906837,12907146,+,AluSx3,SINE,Alu,1,308,-3,12906837,12907149 -3 + chr20 12920629 12920721 chr20,12920624,12920724,-,MIRb,SINE,MIR,-68,200,85,12920556,12920808 +3 - chr20 12924732 12924780 chr20,12924674,12924780,+,MIRb,SINE,MIR,117,216,-52,12924558,12924832 -4 + chr20 12934877 12934981 chr20,12934589,12934981,+,LTR45C,LTR,ERV1,139,539,0,12934451,12934981 -5 + chr20 12940819 12940936 chr20,12940449,12941120,-,Charlie10,DNA,hAT-Charlie,-755,2067,1357,12939694,12942476 +3 - chr20 12945144 12945192 chr20,12942723,12945209,+,L1PB1,LINE,L1,3672,6151,0,12939052,12945209 -3 + chr20 12951765 12952519 chr20,12951752,12953035,-,L1M4c,LINE,L1,-2645,3737,2483,12949107,12955517 +1 - chr20 13245242 13245369 chr20,13245117,13245572,-,MLT1F2,LTR,ERVL-MaLR,0,624,1,13245117,13245572 +1 - chr20 13368291 13368303 chr20,13368193,13368303,+,MIRc,SINE,MIR,13,140,-128,13368181,13368431 -5 + chr20 13368294 13368375 chr20,13368294,13368375,-,L2a,LINE,L2,-1,3425,3338,13368293,13371712 +6 - chr20 13368478 13368693 chr20,13368478,13368693,-,LTR16C,LTR,ERVL,-249,240,12,13368229,13368704 +6 - chr20 14554384 14554428 chr20,14554349,14554470,-,MIRb,SINE,MIR,-106,162,42,14554243,14554511 -1 - chr20 14621854 14621929 chr20,14621854,14622063,+,MIRc,SINE,MIR,11,229,-39,14621844,14622102 +4 + chr20 14622874 14623014 chr20,14622865,14623178,+,LTR16,LTR,ERVL,1,314,-124,14622865,14623302 +3 + chr20 14626913 14627100 chr20,14626123,14627100,+,ERV3-16A3_I-int,LTR,ERVL,4231,5176,-50,14621893,14627150 +1 + chr20 14628637 14628776 chr20,14628223,14628776,-,L2c,LINE,L2,-568,2851,2244,14627655,14631019 -2 - chr20 14628866 14628908 chr20,14628866,14628997,-,L3b,LINE,CR1,-359,4873,4721,14628507,14633717 -5 - chr20 14884253 14884594 chr20,14884207,14884595,-,MLT1G1,LTR,ERVL-MaLR,-2,577,104,14884205,14884698 +5 - chr20 14905971 14906021 chr20,14905971,14906021,+,(GTTTTT)n,Simple_repeat,Simple_repeat,1,47,0,14905971,14906021 -6 + chr20 14929375 14929515 chr20,14929081,14929880,-,MER21C,LTR,ERVL,-23,915,70,14929058,14929949 +1 - chr20 14933870 14933942 chr20,14933870,14934118,-,MIR,SINE,MIR,-15,253,4,14933855,14934121 +2 - chr20 14934930 14935074 chr20,14934906,14935105,-,LTR33,LTR,ERVL,-304,211,1,14934602,14935105 +3 - chr20 14935250 14935327 chr20,14935250,14935327,-,L3b,LINE,CR1,-770,3329,3264,14934480,14938590 +6 - chr20 14935327 14935363 chr20,14935327,14935489,+,MER5A,DNA,hAT-Charlie,1,167,-22,14935327,14935511 -1 + chr20 15552612 15552885 chr20,15552532,15553004,+,LTR16E1,LTR,ERVL,33,537,-1,15552500,15553005 -1 + chr20 16576068 16576081 chr20,16575775,16576081,+,AluSx,SINE,Alu,1,296,-16,16575775,16576097 +1 + chr20 16578879 16579317 chr20,16578819,16579317,+,MLT1H,LTR,ERVL-MaLR,18,526,-23,16578802,16579340 +2 + chr20 16717545 16717557 chr20,16717357,16717557,+,MLT1J,LTR,ERVL-MaLR,3,215,-297,16717355,16717854 -4 + chr20 16717557 16717672 chr20,16717557,16717854,+,AluJr,SINE,Alu,1,304,-8,16717557,16717862 -2 + chr20 16730801 16730902 chr20,16730801,16730902,+,MIRc,SINE,MIR,7,114,-154,16730795,16731056 -6 + chr20 16730915 16730948 chr20,16730915,16731143,-,MIR,SINE,MIR,0,268,2,16730915,16731144 +1 - chr20 16857962 16858064 chr20,16857923,16858064,-,MLT1K,LTR,ERVL-MaLR,-319,276,139,16857604,16858202 +5 - chr20 16863982 16864107 chr20,16863933,16864107,+,LTR16A,LTR,ERVL,181,353,-85,16863753,16864192 -4 + chr20 16864107 16864148 chr20,16864107,16864582,+,MLT1F1,LTR,ERVL-MaLR,3,569,0,16864105,16864582 -1 + chr20 17565501 17565823 chr20,17565176,17565823,+,L1ME3G,LINE,L1,213,924,0,17564964,17565823 -5 + chr20 17565835 17565851 chr20,17565835,17566140,+,AluSx1,SINE,Alu,1,305,-7,17565835,17566147 -1 + chr20 17887363 17887397 chr20,17887094,17887397,-,AluSz,SINE,Alu,-9,303,1,17887085,17887397 +5 - chr20 17887971 17888160 chr20,17887886,17888373,+,MLT1F,LTR,ERVL-MaLR,1,546,-2,17887886,17888375 -1 + chr20 18070841 18070863 chr20,18070342,18070863,+,MLT1N2,LTR,ERVL-MaLR,3,535,-27,18070340,18070890 +2 + chr20 18070899 18071008 chr20,18070899,18071013,-,MamTip1,DNA,hAT-Tip100,-1,266,162,18070898,18071174 -5 - chr20 18322552 18322979 chr20,18322523,18323280,-,MER4E1,LTR,ERV1,0,781,1,18322523,18323280 +5 - chr20 18323644 18324455 chr20,18323500,18324455,+,MER4-int,LTR,ERV1,263,1125,-5473,18323238,18329928 -5 + chr20 18324458 18324687 chr20,18324458,18324687,+,MER4-int,LTR,ERV1,3149,3243,-3355,18321310,18328042 -6 + chr20 18324687 18325234 chr20,18324687,18325341,+,PABL_A,LTR,ERV1,1,660,0,18324687,18325341 -2 + chr20 18328698 18328975 chr20,18326139,18328996,+,MER4-int,LTR,ERV1,3728,6593,-5,18322412,18329001 -3 + chr20 18345490 18345545 chr20,18345226,18345545,+,L1M5,LINE,L1,3712,4049,-2097,18341515,18347642 -4 + chr20 18379049 18379069 chr20,18379043,18379220,+,MER33,DNA,hAT-Charlie,13,184,-140,18379031,18379360 +1 + chr20 18380772 18380783 chr20,18380680,18380783,+,MER33,DNA,hAT-Charlie,222,324,0,18380459,18380783 +1 + chr20 18381041 18381147 chr20,18381041,18381147,+,MLT2F,LTR,ERVL,206,312,-351,18380836,18381498 +6 + chr20 18381161 18381484 chr20,18381161,18381514,+,LTR16,LTR,ERVL,1,438,0,18381161,18381514 +5 + chr20 18674857 18674904 chr20,18674857,18674904,-,Helitron3Na_Mam,RC,Helitron,-339,147,98,18674518,18675001 +6 - chr20 18674904 18675382 chr20,18674904,18675382,-,MLT1F,LTR,ERVL-MaLR,-2,546,1,18674902,18675382 +6 - chr20 18675382 18675402 chr20,18675382,18675402,-,Helitron3Na_Mam,RC,Helitron,-389,97,84,18674993,18675485 +6 - chr20 18786065 18786373 chr20,18786009,18786373,-,THE1B,LTR,ERVL-MaLR,0,364,1,18786009,18786373 +5 - chr20 18786373 18787923 chr20,18786373,18787923,-,THE1B-int,LTR,ERVL-MaLR,0,1580,1,18786373,18787923 +6 - chr20 18787923 18788251 chr20,18787923,18788251,-,THE1B,LTR,ERVL-MaLR,0,364,46,18787923,18788296 +6 - chr20 18788257 18788311 chr20,18788257,18788311,+,L1PB4,LINE,L1,6093,6144,-12,18782165,18788323 -6 + chr20 18788313 18788359 chr20,18788313,18788359,-,THE1B,LTR,ERVL-MaLR,-382,46,1,18787931,18788359 +6 - chr20 18788359 18788650 chr20,18788359,18788650,-,L1MC1,LINE,L1,-622,5711,5423,18787737,18794072 +5 - chr20 18788742 18788898 chr20,18788742,18788988,-,MLT1H,LTR,ERVL-MaLR,-222,327,76,18788520,18789063 +2 - chr20 18789574 18789659 chr20,18789469,18789659,-,LTR79,LTR,ERVL,-2,525,325,18789467,18789983 +4 - chr20 18791947 18792030 chr20,18791947,18792030,+,MLT1H2,LTR,ERVL-MaLR,104,186,-303,18791844,18792333 -6 + chr20 18793953 18793993 chr20,18793953,18794451,+,MLT2F,LTR,ERVL,5,663,0,18793949,18794451 -1 + chr20 18794168 18794335 chr20,18793953,18794451,+,MLT2F,LTR,ERVL,5,663,0,18793949,18794451 -1 + chr20 18794973 18795586 chr20,18794973,18795586,-,MER49,LTR,ERV1,-81,842,21,18794892,18795606 -6 - chr20 18795592 18795639 chr20,18795592,18795639,+,MER81,DNA,hAT-Blackjack,30,79,-35,18795563,18795674 +6 + chr20 18795673 18795783 chr20,18795673,18795783,+,MLT1L,LTR,ERVL-MaLR,500,605,-5,18795174,18795788 +6 + chr20 18795795 18795975 chr20,18795795,18795975,+,MARNA,DNA,TcMar-Mariner,380,575,-11,18795416,18795986 +6 + chr20 19056730 19056796 chr20,19056613,19062615,+,L1PB1,LINE,L1,636,6867,0,19055978,19062615 -1 + chr20 19264078 19264153 chr20,19263955,19264176,+,AluJb,SINE,Alu,1,300,-12,19263955,19264188 -3 + chr20 19265733 19265999 chr20,19265543,19266050,-,MLT1K,LTR,ERVL-MaLR,0,595,29,19265543,19266078 +3 - chr20 19693209 19693255 chr20,19693208,19693255,+,(TTCTTTT)n,Simple_repeat,Simple_repeat,1,47,0,19693208,19693255 -5 + chr20 19693552 19693989 chr20,19693510,19693989,-,MLT1H,LTR,ERVL-MaLR,0,569,27,19693510,19694015 +4 - chr20 19694004 19694103 chr20,19694004,19694103,+,MIR3,SINE,MIR,109,208,0,19693896,19694103 -6 + chr20 19695511 19695667 chr20,19695511,19695667,-,L1PB4,LINE,L1,0,6156,6006,19695511,19701672 +6 - chr20 19697475 19697505 chr20,19697334,19697505,-,MIRb,SINE,MIR,-44,224,66,19697290,19697570 +4 - chr20 19756390 19756776 chr20,19756347,19756776,-,LTR7B,LTR,ERV1,-2,462,1,19756345,19756776 +5 - chr20 19756795 19757048 chr20,19756795,19757048,+,L2a,LINE,L2,3131,3424,-2,19753665,19757050 -6 + chr20 19757215 19757250 chr20,19757215,19757250,+,(TCTGTT)n,Simple_repeat,Simple_repeat,1,36,0,19757215,19757250 -6 + chr20 19758153 19758242 chr20,19758153,19758242,+,(CCT)n,Simple_repeat,Simple_repeat,1,95,0,19758153,19758242 +6 + chr20 19871970 19872284 chr20,19871970,19872331,+,THE1D,LTR,ERVL-MaLR,1,380,-1,19871970,19872332 +5 + chr20 20258490 20258559 chr20,20258490,20258737,+,L3,LINE,CR1,3724,3967,-132,20254767,20258869 -2 + chr20 20259747 20259796 chr20,20259747,20259851,-,MLT1J,LTR,ERVL-MaLR,-394,118,2,20259353,20259852 +2 - chr20 20267631 20267809 chr20,20267631,20267948,-,MER61A,LTR,ERV1,0,341,1,20267631,20267948 +1 - chr20 20364442 20364503 chr20,20364442,20364503,+,(GCGG)n,Simple_repeat,Simple_repeat,1,61,0,20364442,20364503 +6 + chr20 21087604 21087700 chr20,21087194,21087700,-,L1MC4a,LINE,L1,-2050,5832,5380,21085144,21093079 +5 - chr20 21087713 21087911 chr20,21087713,21087911,-,MIRb,SINE,MIR,-8,260,68,21087705,21087978 +6 - chr20 21087921 21088030 chr20,21087921,21088319,+,MLT1J,LTR,ERVL-MaLR,12,427,-85,21087910,21088404 -2 + chr20 21092819 21093063 chr20,21092819,21093063,-,MIRb,SINE,MIR,-12,256,21,21092807,21093083 +6 - chr20 21151014 21151025 chr20,21151014,21151178,-,MIR,SINE,MIR,-37,225,68,21150977,21151245 +2 - chr20 21151733 21151827 chr20,21151733,21151944,+,L1ME3G,LINE,L1,5555,5745,-2137,21146179,21154081 -2 + chr20 21158404 21158526 chr20,21158358,21158558,+,L1ME4b,LINE,L1,365,565,-327,21157994,21158885 -3 + chr20 21158666 21158726 chr20,21158666,21158726,+,LFSINE_Vert,SINE,tRNA,235,294,-165,21158432,21158891 -6 + chr20 21160894 21160948 chr20,21160661,21161021,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,21160661,21161021 -3 + chr20 21194708 21194845 chr20,21194708,21194845,+,FLAM_C,SINE,Alu,2,130,-13,21194707,21194858 -6 + chr20 21195312 21195438 chr20,21195312,21195438,+,Zaphod3,DNA,hAT-Tip100,42,180,-2443,21195271,21197881 -6 + chr20 21195611 21195915 chr20,21195611,21195915,+,MER102b,DNA,hAT-Charlie,3,329,-12,21195609,21195927 -6 + chr20 21198054 21198361 chr20,21198054,21198361,-,AluY,SINE,Alu,-4,307,1,21198050,21198361 +6 - chr20 21400352 21400391 chr20,21400352,21400467,-,L1ME4b,LINE,L1,-40,852,742,21400312,21401208 -5 - chr20 21499385 21499505 chr20,21499385,21499505,+,Charlie30a,DNA,hAT-Charlie,126,249,-542,21499260,21500047 -6 + chr20 21499558 21499745 chr20,21499558,21499745,-,MER3,DNA,hAT-Charlie,-19,190,1,21499539,21499745 +6 - chr20 21499818 21499882 chr20,21499818,21499882,+,(CCCTCAC)n,Simple_repeat,Simple_repeat,1,66,0,21499818,21499882 -6 + chr20 21500001 21500095 chr20,21500001,21500095,-,MIRc,SINE,MIR,-102,166,86,21499899,21500180 +6 - chr20 21500297 21500402 chr20,21500297,21500402,+,MIR3,SINE,MIR,107,207,-1,21500191,21500403 -6 + chr20 21500562 21500710 chr20,21500562,21500710,+,MER5A1,DNA,hAT-Charlie,1,162,-4,21500562,21500714 -6 + chr20 21502120 21502468 chr20,21502120,21502468,-,MLT1B,LTR,ERVL-MaLR,-27,369,8,21502093,21502475 +6 - chr20 21530655 21530744 chr20,21530655,21530768,+,L3b,LINE,CR1,4874,4982,-250,21525782,21531018 +5 + chr20 21577595 21578028 chr20,21577424,21578055,-,Tigger17a,DNA,TcMar-Tigger,-9,645,5,21577415,21578059 -5 - chr20 21611114 21611271 chr20,21611114,21611292,+,AluJo,SINE,Alu,122,302,-10,21610993,21611302 -2 + chr20 21612414 21612459 chr20,21612414,21612459,+,(GT)n,Simple_repeat,Simple_repeat,1,46,0,21612414,21612459 -6 + chr20 21616225 21616325 chr20,21616225,21616508,-,L1ME4a,LINE,L1,-8,6116,5839,21616217,21622346 -5 - chr20 21619196 21619395 chr20,21618784,21619395,-,L1ME1,LINE,L1,-135,6044,5446,21618649,21624840 -2 - chr20 21619467 21619514 chr20,21619467,21619514,+,(TAA)n,Simple_repeat,Simple_repeat,1,47,0,21619467,21619514 +6 + chr20 21626343 21626426 chr20,21626067,21626426,-,MER1B,DNA,hAT-Charlie,0,339,1,21626067,21626426 +3 - chr20 21627349 21627442 chr20,21627119,21627824,+,HAL1,LINE,L1,1472,2246,-261,21625648,21628085 -3 + chr20 22054178 22054284 chr20,22054178,22054362,+,MLT1K,LTR,ERVL-MaLR,380,574,-21,22053799,22054383 +4 + chr20 22074502 22074654 chr20,22074303,22074700,+,MLT1B,LTR,ERVL-MaLR,3,390,0,22074301,22074700 +5 + chr20 22280497 22280540 chr20,22280497,22280704,+,MER58A,DNA,hAT-Charlie,1,219,-5,22280497,22280709 -2 + chr20 22282655 22282672 chr20,22282655,22283111,+,MER101,LTR,ERV1,1,474,0,22282655,22283111 -1 + chr20 22400351 22400684 chr20,22400244,22400684,-,L1MB7,LINE,L1,-9,6175,5719,22400235,22406402 +5 - chr20 22419960 22420312 chr20,22419853,22420312,+,MER110,LTR,ERV1,1,491,0,22419853,22420312 -4 + chr20 22547676 22547865 chr20,22547676,22547865,-,L2a,LINE,L2,0,3426,3213,22547676,22551077 +6 - chr20 22548453 22548497 chr20,22548453,22548792,-,THE1B,LTR,ERVL-MaLR,0,364,1,22548453,22548792 +2 - chr20 22548848 22548951 chr20,22548792,22550438,-,THE1B-int,LTR,ERVL-MaLR,0,1580,1,22548792,22550438 +3 - chr20 22560697 22560739 chr20,22560697,22560739,+,(AC)n,Simple_repeat,Simple_repeat,1,42,0,22560697,22560739 -6 + chr20 22561914 22561975 chr20,22561914,22561975,+,(AAGA)n,Simple_repeat,Simple_repeat,1,61,0,22561914,22561975 -6 + chr20 22566778 22566805 chr20,22566778,22566815,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,37,0,22566778,22566815 -2 + chr20 22578512 22578543 chr20,22578512,22578543,+,(CGGC)n,Simple_repeat,Simple_repeat,1,32,0,22578512,22578543 -6 + chr20 22676980 22677061 chr20,22676980,22677061,-,MIR,SINE,MIR,-6,256,158,22676974,22677218 +6 - chr20 22677126 22677575 chr20,22677126,22677575,+,MLT1C,LTR,ERVL-MaLR,1,467,0,22677126,22677575 -6 + chr20 22677596 22677777 chr20,22677596,22677777,-,MIRb,SINE,MIR,-21,247,59,22677575,22677835 +6 - chr20 22678145 22678257 chr20,22678145,22678262,+,LTR16A2,LTR,ERVL,33,152,-343,22678113,22678605 -2 + chr20 22683664 22683751 chr20,22683664,22683751,-,MIR3,SINE,MIR,-24,184,94,22683640,22683844 +6 - chr20 22683809 22683893 chr20,22683809,22683938,-,MIRb,SINE,MIR,-9,259,132,22683800,22684069 +2 - chr20 22684745 22684765 chr20,22684720,22684765,+,(CTCATC)n,Simple_repeat,Simple_repeat,1,47,0,22684720,22684765 -4 + chr20 22684814 22684878 chr20,22684814,22685087,-,LTR16C,LTR,ERVL,-2,487,210,22684812,22685296 +1 - chr20 23010209 23010269 chr20,23010073,23010291,+,MamGypLTR1b,LTR,Gypsy,19,239,-543,23010055,23010834 -5 + chr20 23010584 23010617 chr20,23010513,23010617,+,MamGypLTR1b,LTR,Gypsy,678,779,-3,23009836,23010620 -4 + chr20 23010649 23010692 chr20,23010649,23010692,+,(TTTTTT)n,Simple_repeat,Simple_repeat,1,43,0,23010649,23010692 -6 + chr20 23010714 23010896 chr20,23010714,23011002,+,AluSz6,SINE,Alu,24,311,-1,23010691,23011003 -2 + chr20 23016756 23016783 chr20,23016602,23016783,-,L1MEb,LINE,L1,-5283,917,730,23011319,23017512 +4 - chr20 23030544 23030658 chr20,23030435,23030658,-,MLT1L,LTR,ERVL-MaLR,-119,491,188,23030316,23030845 +4 - chr20 23031542 23031656 chr20,23031478,23031656,-,MER5A,DNA,hAT-Charlie,0,189,2,23031478,23031657 -1 - chr20 23031656 23031688 chr20,23031656,23031757,-,MIRc,SINE,MIR,-157,111,10,23031499,23031766 -4 - chr20 23072709 23072722 chr20,23072709,23073332,-,L1ME1,LINE,L1,-2,6177,5516,23072707,23078847 +1 - chr20 23125292 23125374 chr20,23125292,23125374,-,MER58A,DNA,hAT-Charlie,-136,88,6,23125156,23125379 +6 - chr20 23126360 23126408 chr20,23126360,23126408,+,GA-rich,Low_complexity,Low_complexity,1,50,0,23126360,23126408 -6 + chr20 23126437 23126538 chr20,23126437,23126603,-,MER3,DNA,hAT-Charlie,-81,128,1,23126356,23126603 +2 - chr20 23132606 23132621 chr20,23132606,23132757,+,MIR,SINE,MIR,111,260,-2,23132496,23132759 -1 + chr20 23148489 23148627 chr20,23148489,23148627,-,L3,LINE,CR1,-75,4024,3884,23148414,23152510 -6 - chr20 23148658 23148756 chr20,23148658,23148756,-,MER5A,DNA,hAT-Charlie,-87,102,4,23148571,23148759 -6 - chr20 23148857 23148896 chr20,23148857,23148896,+,(AC)n,Simple_repeat,Simple_repeat,1,39,0,23148857,23148896 +6 + chr20 23148899 23148979 chr20,23148899,23148979,-,L3,LINE,CR1,-241,3858,3775,23148658,23152753 -6 - chr20 23149534 23149608 chr20,23149534,23149608,+,LTR16E1,LTR,ERVL,266,351,-187,23149269,23149795 +6 + chr20 23149609 23149687 chr20,23149609,23149687,+,LTR16E1,LTR,ERVL,421,511,-57,23149189,23149744 +6 + chr20 23186400 23186411 chr20,23186263,23186411,-,MIRb,SINE,MIR,-91,177,4,23186172,23186414 -2 - chr20 23187213 23187381 chr20,23186982,23187381,-,MLT1B,LTR,ERVL-MaLR,-7,383,8,23186975,23187388 -2 - chr20 23188196 23189164 chr20,23188196,23189164,+,(TG)n,Simple_repeat,Simple_repeat,1,997,0,23188196,23189164 +6 + chr20 23320958 23321209 chr20,23320621,23321384,-,LTR1B,LTR,ERV1,0,824,1,23320621,23321384 +5 - chr20 23322321 23322365 chr20,23322321,23322392,-,L2a,LINE,L2,-686,2733,2662,23321635,23325053 +2 - chr20 23347263 23347313 chr20,23347263,23347313,-,MIR1_Amn,SINE,MIR,-67,163,114,23347196,23347426 +6 - chr20 23459067 23459133 chr20,23459020,23459133,+,L2c,LINE,L2,3052,3167,-208,23455969,23459341 +2 + chr20 23459266 23459459 chr20,23459266,23459474,+,MIR,SINE,MIR,37,262,0,23459230,23459474 +5 + chr20 23489416 23489599 chr20,23489366,23489599,+,L1ME3Cz,LINE,L1,316,558,-334,23489051,23489933 -5 + chr20 23489950 23489973 chr20,23489950,23490019,-,MLT2A1,LTR,ERVL,0,561,504,23489950,23490522 +1 - chr20 23516884 23517373 chr20,23516636,23517373,+,L1MB8,LINE,L1,5447,6178,0,23511190,23517373 -5 + chr20 23518173 23518205 chr20,23518173,23518205,+,(TG)n,Simple_repeat,Simple_repeat,1,34,0,23518173,23518205 -6 + chr20 23803739 23803836 chr20,23803697,23803990,-,AluSz,SINE,Alu,-16,296,4,23803681,23803993 -3 - chr20 23804523 23804549 chr20,23804172,23804549,+,MLT1I,LTR,ERVL-MaLR,1,410,-1,23804172,23804550 +2 + chr20 23805238 23805466 chr20,23805238,23805466,-,LTR56,LTR,ERV1,-21,424,197,23805217,23805662 -6 - chr20 23805500 23805663 chr20,23805500,23806146,-,L1PB4,LINE,L1,0,6859,6194,23805500,23812339 -5 - chr20 24142824 24142966 chr20,24142824,24142993,+,MIR,SINE,MIR,34,192,-76,24142791,24143069 -2 + chr20 24199767 24199821 chr20,24199690,24199821,-,MLT1J,LTR,ERVL-MaLR,-370,142,3,24199320,24199823 -1 - chr20 24211349 24211569 chr20,24211347,24211569,-,MLT1A1,LTR,ERVL-MaLR,-160,248,1,24211187,24211569 -2 - chr20 24211915 24212673 chr20,24211915,24212673,+,L1MB4,LINE,L1,109,1251,-5498,24211807,24218171 +6 + chr20 24219623 24219638 chr20,24218907,24219638,-,MER57-int,LTR,ERV1,-394,5033,4075,24218513,24223712 -2 - chr20 24219638 24219702 chr20,24219638,24221285,-,LTR12C,LTR,ERV1,0,1579,3,24219638,24221287 -4 - chr20 24223704 24224065 chr20,24222803,24224065,-,MER57-int,LTR,ERV1,-4583,2954,1705,24218220,24225769 -2 - chr20 24224059 24224588 chr20,24224059,24225313,-,MER57-int,LTR,ERV1,-6269,1268,1,24217790,24225313 -5 - chr20 24314670 24314758 chr20,24314659,24314802,-,MIR,SINE,MIR,-20,242,97,24314639,24314898 +3 - chr20 24502169 24502249 chr20,24501823,24502249,+,LTR16C,LTR,ERVL,4,473,-16,24501820,24502265 -4 + chr20 24680305 24680785 chr20,24680041,24680785,+,LTR39,LTR,ERV1,5,776,-7,24680037,24680792 +2 + chr20 24931840 24932579 chr20,24927944,24932579,+,HERVE-int,LTR,ERV1,1975,6705,-1108,24925970,24933687 +1 + chr20 24932581 24932731 chr20,24932581,24932731,+,HERVE-int,LTR,ERV1,6930,7079,-734,24925652,24933465 +6 + chr20 24932731 24932983 chr20,24932731,24933027,+,LTR2C,LTR,ERV1,206,501,0,24932526,24933027 +5 + chr20 25062962 25063456 chr20,25062901,25063456,-,LTR75_1,LTR,ERV1,-1,545,1,25062900,25063456 +5 - chr20 25063456 25063472 chr20,25063456,25063472,-,L2b,LINE,L2,-233,3142,3128,25063223,25066599 +6 - chr20 25140793 25141320 chr20,25140793,25141320,-,L1ME3A,LINE,L1,-4,6169,5560,25140789,25146879 +6 - chr20 25141757 25141801 chr20,25141757,25141801,+,(TC)n,Simple_repeat,Simple_repeat,1,44,0,25141757,25141801 -6 + chr20 25141867 25141941 chr20,25141867,25141941,-,MIRc,SINE,MIR,-112,156,84,25141755,25142024 +6 - chr20 25144372 25144423 chr20,25144372,25144613,+,HAL1M8,LINE,L1,4,246,-2745,25144369,25147358 -2 + chr20 25229150 25229299 chr20,25229006,25229299,+,AluSx3,SINE,Alu,1,287,-24,25229006,25229323 +1 + chr20 25229447 25229629 chr20,25229447,25229629,+,L3,LINE,CR1,3681,3883,-216,25225767,25229845 +6 + chr20 25229882 25230047 chr20,25229882,25230047,-,MIRb,SINE,MIR,-16,252,88,25229866,25230134 -6 - chr20 25230660 25230950 chr20,25230660,25230950,+,AluSx4,SINE,Alu,1,290,-20,25230660,25230970 +6 + chr20 25230965 25231254 chr20,25230965,25231254,+,AluSg,SINE,Alu,3,295,-15,25230963,25231269 +6 + chr20 25231263 25231443 chr20,25231263,25231443,-,L1M5,LINE,L1,-401,5763,5583,25230862,25237025 -6 - chr20 25231445 25231512 chr20,25231445,25231512,+,AluYj4,SINE,Alu,1,67,-244,25231445,25231756 +6 + chr20 25231512 25231933 chr20,25231512,25231972,+,LTR7B,LTR,ERV1,1,462,-2,25231512,25231974 +5 + chr20 25239007 25239367 chr20,25238954,25239367,-,MSTA,LTR,ERVL-MaLR,0,428,1,25238954,25239367 +5 - chr20 25240401 25240692 chr20,25240401,25240692,+,AluSq2,SINE,Alu,1,303,-10,25240401,25240702 -6 + chr20 25240909 25241148 chr20,25240909,25241148,-,L1MC4,LINE,L1,-580,7462,7203,25240329,25248350 +6 - chr20 25241148 25241231 chr20,25241148,25241245,-,L1MC4,LINE,L1,-895,7147,7054,25240253,25248298 +2 - chr20 25284915 25285022 chr20,25284743,25285022,+,MamRep1151,LTR?,LTR?,326,645,-64,25284418,25285086 -5 + chr20 25634049 25634170 chr20,25634028,25634327,-,AluSx1,SINE,Alu,-13,299,1,25634015,25634327 -3 - chr20 25634729 25634827 chr20,25634715,25634983,-,AluSx,SINE,Alu,-44,268,1,25634671,25634983 -3 - chr20 25645531 25645648 chr20,25645509,25645776,-,AluJo,SINE,Alu,-16,296,29,25645493,25645804 -3 - chr20 25673852 25673906 chr20,25673450,25673906,-,ERV3-16A3_I-int,LTR,ERVL,-4586,640,173,25668864,25674078 -2 - chr20 25674168 25674580 chr20,25674168,25674580,-,MLT1A1,LTR,ERVL-MaLR,-3,405,6,25674165,25674585 -6 - chr20 25674676 25674756 chr20,25674676,25674756,-,LTR16B2,LTR,ERVL,-287,175,93,25674389,25674848 -6 - chr20 25677042 25677540 chr20,25677042,25677540,+,L1MA4,LINE,L1,3453,3953,-2190,25673590,25679730 +5 + chr20 25677540 25677851 chr20,25677540,25677851,-,AluJb,SINE,Alu,-19,293,1,25677521,25677851 -5 - chr20 25677851 25678074 chr20,25677851,25678663,+,L1MA4,LINE,L1,3954,4791,-1352,25673898,25680015 +5 + chr20 25680799 25680865 chr20,25680799,25680865,+,LTR37B,LTR,ERV1,346,412,-56,25680454,25680921 +6 + chr20 25680985 25681246 chr20,25680985,25681270,+,MLT1A,LTR,ERVL-MaLR,5,351,-23,25680981,25681293 +5 + chr20 25955812 25955869 chr20,25955655,25956084,+,MER57A1,LTR,ERV1,1,432,0,25955655,25956084 +1 + chr20 25956086 25956210 chr20,25956084,25956391,+,MER57-int,LTR,ERV1,1,288,-7249,25956084,25963640 +3 + chr20 25965003 25965280 chr20,25964989,25965280,-,AluSc8,SINE,Alu,-20,291,1,25964969,25965280 -2 - chr20 25965283 25965440 chr20,25965283,25965440,-,AluJb,SINE,Alu,-19,293,137,25965264,25965576 -6 - chr20 25965483 25968198 chr20,25965483,25968198,-,ALR/Alpha,Satellite,centr,-18,2726,1,25965465,25968198 -6 - chr20 25968198 25968490 chr20,25968198,25968490,-,AluY,SINE,Alu,0,311,1,25968198,25968490 -6 - chr20 25968490 25969288 chr20,25968490,25975498,-,ALR/Alpha,Satellite,centr,-82,6982,1,25968408,25975498 -5 - chr20 26010340 26010531 chr20,26010340,26010570,+,LTR25,LTR,ERV1,33,354,-490,26010308,26011060 -1 + chr20 26054779 26055085 chr20,26054779,26055164,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,26054779,26055164 +4 + chr20 26057398 26057602 chr20,26056189,26057747,+,SST1,Satellite,centr,1,1552,-11,26056189,26057758 +1 + chr20 26065647 26065784 chr20,26065646,26065787,+,AluY,SINE,Alu,1,143,-168,26065646,26065955 +1 + chr20 26067076 26067174 chr20,26067076,26067179,+,MIRc,SINE,MIR,96,202,-66,26066981,26067245 +4 + chr20 26068917 26069169 chr20,26068683,26069169,+,MER90a,LTR,ERV1,94,614,0,26068590,26069169 +1 + chr20 26086614 26086698 chr20,26086614,26086698,+,L1M5,LINE,L1,5737,5829,-333,26080878,26087031 +6 + chr20 26134039 26134198 chr20,26134014,26134227,-,REP522,Satellite,telo,-571,223,1,26133443,26134227 +1 - chr20 26191671 26191731 chr20,26191619,26191731,-,LTR22C2,LTR,ERVK,0,496,383,26191619,26192113 +4 - chr20 26191731 26191763 chr20,26191731,26191974,-,Tigger2a,DNA,TcMar-Tigger,-185,249,1,26191546,26191974 +5 - chr20 26191793 26191900 chr20,26191731,26191974,-,Tigger2a,DNA,TcMar-Tigger,-185,249,1,26191546,26191974 +5 - chr20 26192129 26192303 chr20,26191974,26192303,-,Zaphod2,DNA,hAT-Tip100,-3006,518,165,26188968,26192467 +4 - chr20 26192318 26192447 chr20,26192318,26192447,-,Zaphod2,DNA,hAT-Tip100,-3316,208,81,26189002,26192527 +6 - chr20 26192731 26192825 chr20,26192731,26192825,+,(TTATTAT)n,Simple_repeat,Simple_repeat,1,92,0,26192731,26192825 -6 + chr20 26193576 26193739 chr20,26193576,26193739,-,MER58A,DNA,hAT-Charlie,-58,166,2,26193518,26193740 -6 - chr20 26196619 26196677 chr20,26196618,26196677,-,L2a,LINE,L2,-24,3402,3345,26196594,26200021 -2 - chr20 26199457 26199525 chr20,26199457,26199880,+,MLT1B,LTR,ERVL-MaLR,2,390,0,26199456,26199880 -1 + chr20 26200196 26200316 chr20,26200015,26200344,+,AluJr,SINE,Alu,11,307,-5,26200005,26200349 -3 + chr20 26200458 26200498 chr20,26200361,26200498,+,UCON71_Crp,Unknown,Unknown,4,150,-127,26200358,26200625 -4 + chr20 26207822 26207967 chr20,26207822,26207967,+,L2a,LINE,L2,3197,3345,-81,26204626,26208048 -6 + chr20 26209083 26209095 chr20,26209083,26209123,+,(C)n,Simple_repeat,Simple_repeat,1,40,0,26209083,26209123 -1 + chr20 26209743 26209844 chr20,26209716,26209878,-,FordPrefect,DNA,hAT-Tip100,-728,955,802,26208988,26210679 +1 - chr20 26251263 26251526 chr20,26251103,26251789,-,SST1,Satellite,centr,0,1563,847,26251103,26252635 +1 - chr20 30278906 30280302 chr20,30276451,30280302,-,ALR/Alpha,Satellite,centr,-29,3867,1,30276422,30280302 +5 - chr20 30280593 30282135 chr20,30280593,30282152,+,SST1,Satellite,centr,1,1552,-11,30280593,30282163 -2 + chr20 30287242 30287263 chr20,30287242,30287263,+,(TTC)n,Simple_repeat,Simple_repeat,1,21,0,30287242,30287263 -6 + chr20 30324527 30324631 chr20,30324519,30324631,+,MIRb,SINE,MIR,109,223,-45,30324411,30324676 -4 + chr20 30331080 30331210 chr20,30331043,30331210,-,MLT1J2,LTR,ERVL-MaLR,-20,428,257,30331023,30331466 +5 - chr20 30350332 30350467 chr20,30350243,30350707,+,Charlie1b,DNA,hAT-Charlie,22,368,-155,30350222,30350862 -3 + chr20 31487032 31487140 chr20,31486860,31487140,-,AluJb,SINE,Alu,-31,281,10,31486829,31487149 -2 - chr20 31487282 31487359 chr20,31487245,31487391,+,L2a,LINE,L2,3268,3426,0,31483978,31487391 +3 + chr20 31535263 31535493 chr20,31535236,31535493,-,L4_A_Mam,LINE,RTE-X,-2,4988,4724,31535234,31540216 -1 - chr20 31563375 31563418 chr20,31563375,31563619,-,AluSz,SINE,Alu,-63,249,5,31563312,31563623 -4 - chr20 31563974 31564076 chr20,31563794,31564095,+,AluSp,SINE,Alu,1,303,-10,31563794,31564105 +5 + chr20 31567708 31567942 chr20,31567708,31567942,-,L1ME4b,LINE,L1,-210,682,478,31567498,31568419 +6 - chr20 31581031 31581055 chr20,31581031,31581055,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,31581031,31581055 +6 + chr20 31581088 31581187 chr20,31581088,31581187,+,U6,snRNA,snRNA,1,102,-5,31581088,31581192 +6 + chr20 31686216 31686312 chr20,31686188,31686312,-,MIRb,SINE,MIR,-114,154,22,31686074,31686333 -1 - chr20 31716621 31716721 chr20,31716615,31716721,-,L2c,LINE,L2,-23,3352,3260,31716592,31719980 -2 - chr20 31716688 31716825 chr20,31716688,31716836,-,L3,LINE,CR1,-152,3947,3801,31716536,31720636 -5 - chr20 31970789 31970831 chr20,31970789,31971044,-,MIR,SINE,MIR,-1,261,2,31970788,31971045 -5 - chr20 32027764 32028157 chr20,32027764,32028157,-,L2b,LINE,L2,-5,3370,3031,32027759,32031187 +6 - chr20 32028157 32028451 chr20,32028157,32028451,+,AluSz,SINE,Alu,3,300,-12,32028155,32028463 -6 + chr20 32028451 32028590 chr20,32028451,32028590,-,L2b,LINE,L2,-386,3033,2896,32028065,32031485 +6 - chr20 32028581 32028885 chr20,32028581,32028885,-,L2b,LINE,L2,-165,3210,2910,32028416,32031794 +6 - chr20 32029137 32029171 chr20,32029137,32029321,-,L2a,LINE,L2,-354,3065,2866,32028783,32032186 +2 - chr20 32031235 32031262 chr20,32031235,32031262,+,(CGA)n,Simple_repeat,Simple_repeat,1,27,0,32031235,32031262 -6 + chr20 32116171 32116222 chr20,32116121,32116222,-,L1MB4,LINE,L1,-39,6141,6039,32116082,32122260 -1 - chr20 32116222 32116315 chr20,32116222,32116315,+,MIRb,SINE,MIR,148,240,-28,32116075,32116343 +6 + chr20 32355053 32355183 chr20,32354965,32355183,-,MIRb,SINE,MIR,-3,265,31,32354962,32355213 -1 - chr20 32519807 32519972 chr20,32519807,32519972,-,FRAM,SINE,Alu,-11,165,1,32519796,32519972 -6 - chr20 32520019 32520285 chr20,32520019,32520302,+,AluY,SINE,Alu,18,298,-13,32520002,32520315 +5 + chr20 32572388 32572512 chr20,32572372,32572562,-,MIR,SINE,MIR,-25,237,26,32572347,32572587 -3 - chr20 32573632 32573736 chr20,32573518,32573736,-,MIRc,SINE,MIR,-8,260,24,32573510,32573759 -2 - chr20 32587479 32587556 chr20,32587438,32587564,+,MIRb,SINE,MIR,87,244,-24,32587352,32587588 +1 + chr20 32593693 32593745 chr20,32593578,32593745,+,L2c,LINE,L2,3006,3183,-204,32590573,32593949 +2 + chr20 32593831 32593900 chr20,32593831,32593951,+,MLT1K,LTR,ERVL-MaLR,13,139,-456,32593819,32594407 +5 + chr20 32608310 32608327 chr20,32608022,32608327,+,L2b,LINE,L2,2674,2974,-445,32605349,32608772 +2 + chr20 32608478 32608585 chr20,32608478,32608585,-,L2c,LINE,L2,-13,3374,3266,32608465,32611850 -6 - chr20 32608586 32608867 chr20,32608586,32608867,+,L2b,LINE,L2,3070,3375,0,32605517,32608867 +6 + chr20 32608883 32608893 chr20,32608883,32609127,-,L2a,LINE,L2,-197,3229,2950,32608686,32612076 -5 - chr20 32632500 32632694 chr20,32632500,32632694,-,L1ME4b,LINE,L1,-189,703,510,32632311,32633203 +6 - chr20 32632711 32632805 chr20,32632711,32632805,-,MIRb,SINE,MIR,-41,221,118,32632670,32632922 +6 - chr20 32632812 32633165 chr20,32632812,32633165,-,THE1C,LTR,ERVL-MaLR,-3,372,1,32632809,32633165 +6 - chr20 32633165 32633246 chr20,32633165,32633246,+,MER81,DNA,hAT-Blackjack,5,114,0,32633161,32633246 -6 + chr20 32633598 32633697 chr20,32633598,32633697,-,MIR,SINE,MIR,-108,154,25,32633490,32633721 +6 - chr20 32633999 32634270 chr20,32633999,32634400,-,L2c,LINE,L2,0,3387,2979,32633999,32637378 +2 - chr20 32640566 32640687 chr20,32640409,32640722,+,AluSz,SINE,Alu,1,310,-2,32640409,32640724 -3 + chr20 32649255 32649389 chr20,32649166,32649389,+,AluJb,SINE,Alu,85,308,-4,32649082,32649393 -4 + chr20 32649398 32649537 chr20,32649398,32649537,-,MIR,SINE,MIR,-59,203,49,32649339,32649585 +6 - chr20 32651053 32651166 chr20,32651053,32651376,+,AluJo,SINE,Alu,1,311,-1,32651053,32651377 -2 + chr20 32651763 32651843 chr20,32651763,32651843,-,MIRb,SINE,MIR,-130,138,57,32651633,32651899 +6 - chr20 32651881 32651981 chr20,32651881,32652025,-,L2c,LINE,L2,-17,3370,3242,32651864,32655266 +2 - chr20 32673740 32673830 chr20,32673740,32673830,+,L2b,LINE,L2,3287,3374,-1,32670454,32673831 -6 + chr20 32843133 32843159 chr20,32843133,32843159,+,(TTTA)n,Simple_repeat,Simple_repeat,1,26,0,32843133,32843159 -6 + chr20 32843438 32843506 chr20,32843438,32843757,-,MER33,DNA,hAT-Charlie,0,324,1,32843438,32843757 +2 - chr20 32856678 32856981 chr20,32856678,32856981,-,AluSg,SINE,Alu,-8,302,1,32856670,32856981 -6 - chr20 32857569 32857703 chr20,32857569,32857703,-,FLAM_C,SINE,Alu,-10,133,2,32857559,32857704 -6 - chr20 33216920 33217020 chr20,33216876,33217020,-,L2b,LINE,L2,0,3375,3230,33216876,33220249 +4 - chr20 33655835 33655909 chr20,33655835,33655909,+,AluJb,SINE,Alu,85,166,-146,33655751,33656055 -6 + chr20 33655908 33656004 chr20,33655908,33656004,-,AluSx,SINE,Alu,-78,234,139,33655830,33656142 +6 - chr20 33674700 33674826 chr20,33674700,33674826,+,MIR,SINE,MIR,102,243,-19,33674599,33674845 +6 + chr20 33675252 33675282 chr20,33674894,33675282,+,L2c,LINE,L2,2742,3209,-178,33672153,33675460 +2 + chr20 33729076 33729161 chr20,33729076,33729561,+,MER31A,LTR,ERV1,1,468,-17,33729076,33729578 -2 + chr20 33787373 33787421 chr20,33787306,33787421,-,L1ME3G,LINE,L1,-283,641,529,33787023,33787949 +5 - chr20 33787670 33787777 chr20,33787670,33787846,+,MIRb,SINE,MIR,32,206,-62,33787639,33787908 -2 + chr20 33795514 33795559 chr20,33795375,33795559,+,MIRb,SINE,MIR,28,212,-56,33795348,33795615 -4 + chr20 33797918 33797975 chr20,33797883,33797975,-,L2a,LINE,L2,-609,2810,2734,33797274,33800708 +4 - chr20 33797975 33797995 chr20,33797975,33798407,-,MLT1D,LTR,ERVL-MaLR,-1,504,3,33797974,33798409 +2 - chr20 33983052 33983377 chr20,33983011,33983377,-,LTR16C,LTR,ERVL,0,489,102,33983011,33983478 +5 - chr20 33983583 33983596 chr20,33983583,33983780,+,LTR81C,LTR,Gypsy,875,1094,-59,33982709,33983839 -2 + chr20 33985617 33985974 chr20,33985589,33985974,-,MLT1H2,LTR,ERVL-MaLR,-11,478,100,33985578,33986073 +5 - chr20 33985974 33986357 chr20,33985974,33986357,+,MER66A,LTR,ERV1,1,385,-93,33985974,33986450 -6 + chr20 33986357 33986648 chr20,33986357,33986648,+,AluSc5,SINE,Alu,1,295,-14,33986357,33986662 -6 + chr20 33986648 33986753 chr20,33986648,33986753,+,MER66A,LTR,ERV1,386,478,0,33986263,33986753 -6 + chr20 33986753 33986853 chr20,33986753,33986853,-,MLT1H2,LTR,ERVL-MaLR,-390,99,1,33986363,33986853 +6 - chr20 33987100 33987197 chr20,33987100,33987197,-,MLT1K,LTR,ERVL-MaLR,-388,207,112,33986712,33987308 +6 - chr20 33987211 33987437 chr20,33987211,33987437,-,MIR,SINE,MIR,0,262,20,33987211,33987456 +6 - chr20 33987488 33987782 chr20,33987488,33987782,+,AluJb,SINE,Alu,1,292,-20,33987488,33987802 -6 + chr20 33987943 33988256 chr20,33987943,33988256,+,AluJo,SINE,Alu,1,310,-2,33987943,33988258 -6 + chr20 33989541 33989692 chr20,33989541,33989692,-,MIRb,SINE,MIR,-6,262,99,33989535,33989790 +6 - chr20 33989885 33990013 chr20,33989885,33990063,+,MIR3,SINE,MIR,29,184,-24,33989857,33990087 -2 + chr20 33991775 33991818 chr20,33991696,33991945,+,MLT1N2,LTR,ERVL-MaLR,118,333,-209,33991579,33992154 -1 + chr20 33994283 33994315 chr20,33994283,33994315,+,(GCCCCC)n,Simple_repeat,Simple_repeat,1,57,-27,33994283,33994342 -6 + chr20 33994315 33994354 chr20,33994315,33994354,+,(CCCGCCC)n,Simple_repeat,Simple_repeat,1,39,0,33994315,33994354 -6 + chr20 34015028 34015107 chr20,34015028,34015159,-,L2b,LINE,L2,-228,3147,3019,34014800,34018177 +2 - chr20 34016493 34016583 chr20,34016493,34016583,+,MER5B,DNA,hAT-Charlie,87,177,-1,34016407,34016584 -6 + chr20 34234840 34235030 chr20,34234837,34235160,+,Tigger3,DNA,TcMar-Tigger,338,678,-2351,34234500,34237511 -5 + chr20 34281675 34281778 chr20,34281675,34281987,-,AluSx,SINE,Alu,-19,293,2,34281656,34281988 +2 - chr20 34286028 34286132 chr20,34285817,34286132,+,AluY,SINE,Alu,1,309,-2,34285817,34286134 -4 + chr20 34286250 34286465 chr20,34286250,34286465,-,MIR,SINE,MIR,-31,231,5,34286219,34286469 +6 - chr20 34441592 34441695 chr20,34441591,34441885,-,AluSx1,SINE,Alu,-18,294,1,34441573,34441885 +5 - chr20 34441831 34441885 chr20,34441591,34441885,-,AluSx1,SINE,Alu,-18,294,1,34441573,34441885 +5 - chr20 34454415 34454436 chr20,34454135,34454436,-,AluY,SINE,Alu,-10,301,1,34454125,34454436 -2 - chr20 35174464 35174509 chr20,35174464,35174509,+,MIR3,SINE,MIR,100,146,-62,35174365,35174571 -6 + chr20 35174480 35174597 chr20,35174480,35174597,+,MIRc,SINE,MIR,121,237,-31,35174360,35174628 -6 + chr20 35201747 35202249 chr20,35201703,35202249,+,L1MEf,LINE,L1,2587,3229,-3315,35199117,35205564 -5 + chr20 35202255 35202474 chr20,35202255,35202474,+,AluSx1,SINE,Alu,85,303,-9,35202171,35202483 -6 + chr20 35202474 35202541 chr20,35202474,35202541,+,L1MEf,LINE,L1,2186,2248,-3994,35200289,35206535 -6 + chr20 35202609 35202995 chr20,35202609,35202995,+,L1MEf,LINE,L1,2390,2781,-3365,35200220,35206360 -6 + chr20 35202995 35203230 chr20,35202995,35203230,+,AluSp,SINE,Alu,1,237,-76,35202995,35203306 -6 + chr20 35203230 35203288 chr20,35203230,35203290,+,L1MEf,LINE,L1,2782,2831,-3315,35200449,35206605 -1 + chr20 35216680 35216871 chr20,35216680,35216886,+,AluJr,SINE,Alu,91,296,-16,35216590,35216902 -2 + chr20 35217812 35217927 chr20,35217702,35217927,+,L2a,LINE,L2,2299,2560,-859,35215404,35218786 -5 + chr20 35225645 35225795 chr20,35225645,35225795,+,L2a,LINE,L2,3023,3167,-208,35222623,35226003 -6 + chr20 35225955 35225997 chr20,35225955,35226045,+,L2a,LINE,L2,3336,3424,-2,35222620,35226047 -2 + chr20 35256149 35256365 chr20,35256149,35256365,-,MIR,SINE,MIR,0,230,7,35256149,35256371 +6 - chr20 35256373 35256406 chr20,35256373,35256437,-,MER5A,DNA,hAT-Charlie,-3,186,134,35256370,35256570 +2 - chr20 35262727 35263091 chr20,35262123,35263091,-,LTR5_Hs,LTR,ERVK,0,968,1,35262123,35263091 +5 - chr20 35263264 35263726 chr20,35263264,35263726,+,L2b,LINE,L2,2924,3384,-3,35260341,35263729 -6 + chr20 35267945 35267988 chr20,35267945,35268352,-,LTR16A,LTR,ERVL,0,451,22,35267945,35268373 +2 - chr20 35276361 35276501 chr20,35276322,35276501,-,MIRc,SINE,MIR,-1,267,79,35276321,35276579 +5 - chr20 35277768 35277819 chr20,35277768,35277819,+,(GGGCTG)n,Simple_repeat,Simple_repeat,1,52,0,35277768,35277819 -6 + chr20 35277855 35277880 chr20,35277855,35277880,+,(GGCTGG)n,Simple_repeat,Simple_repeat,1,25,0,35277855,35277880 -6 + chr20 35476203 35476278 chr20,35475924,35476278,+,L2c,LINE,L2,2937,3297,-90,35472988,35476368 -5 + chr20 35481135 35481251 chr20,35481135,35481431,+,AluJb,SINE,Alu,1,297,-15,35481135,35481446 -2 + chr20 36046542 36046585 chr20,36046542,36046585,+,(CCCTTC)n,Simple_repeat,Simple_repeat,1,44,0,36046542,36046585 -6 + chr20 36047010 36047299 chr20,36047010,36047299,-,AluSc,SINE,Alu,-20,289,1,36046990,36047299 +6 - chr20 36064243 36064291 chr20,36064088,36064291,+,MIR,SINE,MIR,32,242,-20,36064057,36064311 -5 + chr20 36072744 36072826 chr20,36072744,36072826,+,L2c,LINE,L2,3305,3378,-9,36069440,36072835 +6 + chr20 36074856 36074876 chr20,36074582,36074876,-,AluSg,SINE,Alu,-15,295,2,36074567,36074877 -2 - chr20 36085179 36085260 chr20,36085030,36085421,-,MLT1I,LTR,ERVL-MaLR,0,411,44,36085030,36085464 -5 - chr20 36086252 36086301 chr20,36086216,36086301,+,MIRc,SINE,MIR,106,193,-75,36086111,36086376 -5 + chr20 36086324 36086387 chr20,36086324,36086626,+,AluSx1,SINE,Alu,2,303,-9,36086323,36086635 -2 + chr20 36087713 36087811 chr20,36087492,36087811,-,AluSg7,SINE,Alu,0,309,1,36087492,36087811 +4 - chr20 36087820 36087955 chr20,36087820,36087955,+,L2,LINE,L2,2701,2839,-580,36085120,36088535 -6 + chr20 36088025 36088161 chr20,36088025,36088161,-,L3,LINE,CR1,-109,3990,3849,36087916,36092009 +6 - chr20 36088177 36088192 chr20,36088177,36088486,-,AluSx,SINE,Alu,-5,307,1,36088172,36088486 +1 - chr20 36149823 36149892 chr20,36149701,36149892,+,L2c,LINE,L2,2966,3179,-208,36146736,36150100 -4 + chr20 36150413 36150505 chr20,36150358,36150505,-,MER33,DNA,hAT-Charlie,-139,185,2,36150219,36150506 +5 - chr20 36150535 36150754 chr20,36150535,36150754,+,MIRb,SINE,MIR,29,262,-6,36150507,36150760 -6 + chr20 36150791 36150905 chr20,36150791,36150905,+,L2c,LINE,L2,3275,3385,-2,36147517,36150907 -6 + chr20 36150987 36151087 chr20,36150987,36151087,+,MIR3,SINE,MIR,71,170,-98,36150917,36151185 -6 + chr20 36151342 36151470 chr20,36151342,36151470,-,MIRc,SINE,MIR,-78,190,57,36151264,36151526 +6 - chr20 36151565 36151615 chr20,36151565,36151615,+,MIR,SINE,MIR,110,160,-102,36151456,36151717 -6 + chr20 36151759 36151819 chr20,36151759,36151819,+,MIRc,SINE,MIR,87,148,-120,36151673,36151939 -6 + chr20 36151819 36152124 chr20,36151819,36152124,+,AluY,SINE,Alu,1,299,-12,36151819,36152136 -6 + chr20 36152124 36152224 chr20,36152124,36152224,+,MIRc,SINE,MIR,149,266,-2,36151976,36152226 -6 + chr20 36153041 36153086 chr20,36153041,36153243,+,L3,LINE,CR1,3662,3862,-237,36149380,36153480 -2 + chr20 36233851 36234025 chr20,36233822,36234025,-,MER113,DNA,hAT-Charlie,-107,414,12,36233715,36234036 -1 - chr20 36234155 36234217 chr20,36234155,36234217,+,(AT)n,Simple_repeat,Simple_repeat,1,62,0,36234155,36234217 +6 + chr20 36507702 36508245 chr20,36507679,36508245,-,MLT1G3,LTR,ERVL-MaLR,-20,575,1,36507659,36508245 +5 - chr20 36508812 36508825 chr20,36508721,36509142,-,L1ME3Cz,LINE,L1,-516,481,36,36508205,36509177 +3 - chr20 36510880 36511032 chr20,36510869,36511214,-,L1MEd,LINE,L1,-1381,4765,4447,36509488,36515660 +3 - chr20 36512609 36512725 chr20,36512450,36512913,-,L2a,LINE,L2,-2,3424,2915,36512448,36515827 +5 - chr20 36562239 36562325 chr20,36562239,36562546,+,AluJb,SINE,Alu,4,298,-14,36562236,36562560 -2 + chr20 36562621 36562736 chr20,36562593,36562753,+,AluSz6,SINE,Alu,131,292,-20,36562463,36562773 -3 + chr20 36570492 36570576 chr20,36570301,36570598,+,AluSq,SINE,Alu,1,298,-15,36570301,36570613 -5 + chr20 36571493 36571543 chr20,36571493,36571664,-,L1ME3G,LINE,L1,-420,504,328,36571073,36571991 +2 - chr20 37096651 37097178 chr20,37096651,37097201,+,MER51A,LTR,ERV1,1,563,-71,37096651,37097272 +5 + chr20 37571894 37571965 chr20,37571888,37572172,-,LTR16A2,LTR,ERVL,-3,492,179,37571885,37572350 -3 - chr20 37583867 37583888 chr20,37583657,37583888,-,L1ME3E,LINE,L1,-241,6002,5779,37583416,37589666 -2 - chr20 37583889 37583935 chr20,37583889,37584141,+,L1M5,LINE,L1,5504,5773,-470,37578386,37584611 +5 + chr20 37619331 37619439 chr20,37619331,37619750,-,L2b,LINE,L2,0,3375,2937,37619331,37622686 +2 - chr20 37622097 37622151 chr20,37622097,37622151,+,(TCTC)n,Simple_repeat,Simple_repeat,1,56,0,37622097,37622151 -6 + chr20 37622151 37622200 chr20,37622151,37622575,-,L2c,LINE,L2,-1,3386,2931,37622150,37625505 +2 - chr20 37622829 37623078 chr20,37622810,37623078,+,MLT1H2,LTR,ERVL-MaLR,47,350,-199,37622764,37623277 -4 + chr20 37678042 37678319 chr20,37678042,37678319,+,L2b,LINE,L2,3097,3375,0,37674946,37678319 +6 + chr20 37678964 37679026 chr20,37678964,37679089,-,MIRb,SINE,MIR,-121,147,21,37678843,37679109 -4 - chr20 37682264 37682552 chr20,37682264,37682552,-,AluSq2,SINE,Alu,-15,298,6,37682249,37682557 -6 - chr20 37682581 37682952 chr20,37682581,37682952,-,LTR16C,LTR,ERVL,-2,487,88,37682579,37683039 -6 - chr20 37682952 37683234 chr20,37682952,37683264,+,AluSx1,SINE,Alu,1,312,0,37682952,37683264 +5 + chr20 38103524 38103928 chr20,38103412,38103928,+,L1MEc,LINE,L1,4250,4734,-1585,38099163,38105513 -5 + chr20 38103928 38104228 chr20,38103928,38104228,+,AluSx1,SINE,Alu,2,301,-11,38103927,38104239 -6 + chr20 38104228 38104889 chr20,38104228,38104889,+,L1MEc,LINE,L1,4735,5411,-908,38099494,38105797 -6 + chr20 38233251 38233373 chr20,38233128,38233373,+,L1MC5a,LINE,L1,2509,2776,-1,38230620,38233374 -5 + chr20 38233507 38233559 chr20,38233507,38233559,-,MIR1_Amn,SINE,MIR,-81,149,88,38233426,38233646 +6 - chr20 38288370 38288669 chr20,38288370,38288669,-,AluSz,SINE,Alu,-14,298,1,38288356,38288669 +6 - chr20 38288681 38288787 chr20,38288681,38288874,-,L1M5,LINE,L1,-479,5763,5565,38288202,38294438 +2 - chr20 38289581 38289746 chr20,38289128,38289765,-,L1M5,LINE,L1,-764,5478,4833,38288364,38294597 +3 - chr20 38326453 38326522 chr20,38326453,38326522,+,MIRb,SINE,MIR,1,73,-195,38326453,38326717 -6 + chr20 38378825 38378872 chr20,38378136,38379949,+,SVA_D,Retroposon,SVA,2,1386,0,38378135,38379949 +1 + chr20 38382938 38383179 chr20,38382938,38383209,+,MER77B,LTR,ERVL,5,313,-291,38382934,38383500 +5 + chr20 38406011 38406085 chr20,38406010,38406085,-,Helitron1Nb_Mam,RC,Helitron,-1016,100,25,38404994,38406109 +5 - chr20 38406087 38406322 chr20,38406087,38406381,-,MLT1J,LTR,ERVL-MaLR,0,512,224,38406087,38406604 +2 - chr20 38415106 38415243 chr20,38414948,38415243,+,AluSx,SINE,Alu,1,294,-18,38414948,38415261 -4 + chr20 38415304 38415363 chr20,38415304,38415363,+,LTR85c,LTR,Gypsy?,765,823,0,38414540,38415363 -6 + chr20 38415598 38415644 chr20,38415598,38415644,+,MLT1A,LTR,ERVL-MaLR,1,49,-325,38415598,38415969 -6 + chr20 38415644 38415992 chr20,38415644,38415992,+,THE1B,LTR,ERVL-MaLR,1,364,0,38415644,38415992 -6 + chr20 38415992 38416313 chr20,38415992,38416313,+,MLT1A,LTR,ERVL-MaLR,50,361,-13,38415943,38416326 -6 + chr20 38416590 38416635 chr20,38416590,38416635,+,(AAAAAC)n,Simple_repeat,Simple_repeat,1,46,0,38416590,38416635 -6 + chr20 38418483 38418523 chr20,38418448,38418523,+,Tigger1,DNA,TcMar-Tigger,2300,2394,-24,38416149,38418547 -5 + chr20 38418549 38418660 chr20,38418549,38418660,+,L2b,LINE,L2,3253,3373,-2,38415297,38418662 -6 + chr20 38425935 38426052 chr20,38425800,38426079,+,AluJb,SINE,Alu,26,306,-6,38425775,38426085 -3 + chr20 38427723 38428148 chr20,38427723,38428148,+,MER68B,LTR,ERVL,67,493,-71,38427657,38428219 -6 + chr20 38429068 38429274 chr20,38429068,38429274,-,AluJb,SINE,Alu,-11,301,86,38429057,38429359 +6 - chr20 38447250 38447377 chr20,38447250,38447377,-,MIRb,SINE,MIR,-26,242,115,38447224,38447491 -1 - chr20 38448550 38448589 chr20,38448550,38448589,-,MIRb,SINE,MIR,-22,246,208,38448528,38448796 -6 - chr20 38955912 38956009 chr20,38955912,38956009,+,MER5A,DNA,hAT-Charlie,1,90,-99,38955912,38956108 +6 + chr20 38956122 38956179 chr20,38956122,38956179,-,L1MC5,LINE,L1,-197,9107,9052,38955925,38965230 -6 - chr20 38956179 38956479 chr20,38956179,38956479,+,AluSg,SINE,Alu,1,302,-8,38956179,38956487 +6 + chr20 38956479 38956547 chr20,38956479,38956605,-,L1MC5,LINE,L1,-253,9051,8919,38956226,38965523 -5 - chr20 38962791 38962989 chr20,38962791,38962989,+,MIR,SINE,MIR,23,248,-14,38962769,38963003 +6 + chr20 39214123 39214240 chr20,39214123,39214240,+,MER103C,DNA,hAT-Charlie,53,175,-122,39214071,39214362 -6 + chr20 39214669 39214792 chr20,39214669,39214792,+,L2b,LINE,L2,3226,3362,-13,39211444,39214805 -6 + chr20 39215547 39215641 chr20,39215531,39215641,-,L2b,LINE,L2,-21,3354,3243,39215510,39218883 +4 - chr20 39215640 39215662 chr20,39215640,39215759,+,MIRb,SINE,MIR,118,236,-32,39215523,39215791 -2 + chr20 39812961 39813229 chr20,39812762,39813274,+,MLT1G1,LTR,ERVL-MaLR,6,576,-3,39812757,39813277 +5 + chr20 40008167 40008525 chr20,40008167,40008525,+,MLT1H2,LTR,ERVL-MaLR,200,555,0,40007968,40008525 +5 + chr20 40034161 40034279 chr20,40034123,40034366,+,MLT1J,LTR,ERVL-MaLR,223,477,-35,40033901,40034401 +3 + chr20 40043522 40043889 chr20,40043522,40043981,-,L1MD,LINE,L1,-1899,4247,3786,40041623,40047766 -5 - chr20 40696581 40696938 chr20,40696581,40696938,-,L1ME3G,LINE,L1,-335,589,211,40696246,40697148 +6 - chr20 40697034 40697295 chr20,40697034,40697295,-,L2c,LINE,L2,-150,3237,2978,40696884,40700272 +6 - chr20 40697422 40697462 chr20,40697422,40697462,+,L2b,LINE,L2,3378,3417,-9,40694045,40697471 -6 + chr20 40698597 40698616 chr20,40698597,40698829,-,LTR16B1,LTR,ERVL,0,480,248,40698597,40699076 +1 - chr20 41100658 41100792 chr20,41100401,41101086,-,MER44C,DNA,TcMar-Tigger,0,733,1,41100401,41101086 +3 - chr20 41133487 41133526 chr20,41133149,41133526,+,LTR16A,LTR,ERVL,1,451,0,41133149,41133526 -4 + chr20 41133543 41133645 chr20,41133543,41133680,+,AluSq2,SINE,Alu,172,311,-2,41133372,41133682 -2 + chr20 41135174 41135292 chr20,41135174,41135356,+,MIRb,SINE,MIR,40,228,-40,41135135,41135396 -2 + chr20 41485571 41485639 chr20,41485384,41485639,+,Tigger11a,DNA,TcMar-Tigger,322,601,-134,41485063,41485773 -5 + chr20 41485648 41485954 chr20,41485648,41485954,+,L1MA8,LINE,L1,5948,6291,0,41479701,41485954 -6 + chr20 41485992 41486126 chr20,41485992,41486126,+,Tigger11a,DNA,TcMar-Tigger,596,734,-1,41485397,41486127 -6 + chr20 42014541 42014606 chr20,42014290,42014606,-,AluY,SINE,Alu,-2,309,2,42014288,42014607 +4 - chr20 42063507 42063788 chr20,42062924,42063788,+,L4_A_Mam,LINE,RTE-X,1445,2371,-2619,42061480,42066407 +2 + chr20 42063783 42063900 chr20,42063783,42063900,+,L1ME3G,LINE,L1,796,915,-9,42062988,42063909 +6 + chr20 42686289 42686312 chr20,42686289,42686457,+,LTR16C,LTR,ERVL,178,341,-148,42686112,42686605 +4 + chr20 42687876 42687994 chr20,42687876,42687994,-,MIR,SINE,MIR,-21,241,118,42687855,42688111 -6 - chr20 42687997 42688221 chr20,42687997,42688221,+,LTR33A,LTR,ERVL,1,256,-539,42687997,42688760 +6 + chr20 42688348 42688562 chr20,42688348,42688604,+,LTR33A,LTR,ERVL,301,666,-129,42688048,42688733 +5 + chr20 42968743 42968808 chr20,42968642,42968808,-,MIRb,SINE,MIR,-52,216,42,42968590,42968849 -1 - chr20 42969489 42969594 chr20,42969489,42969594,-,MIR,SINE,MIR,0,262,151,42969489,42969744 -6 - chr20 42969594 42969661 chr20,42969594,42969937,+,MER46C,DNA,TcMar-Tigger,1,338,0,42969594,42969937 +4 + chr20 42970826 42970841 chr20,42970686,42970841,+,Kanga1b,DNA,TcMar-Tc2,20,181,0,42970667,42970841 +2 + chr20 42971402 42971492 chr20,42971402,42971700,+,L2a,LINE,L2,2806,3106,-269,42968597,42971969 +5 + chr20 43190174 43190221 chr20,43190174,43190221,+,(CGCCG)n,Simple_repeat,Simple_repeat,1,47,0,43190174,43190221 +6 + chr20 43201344 43201438 chr20,43201344,43201438,-,MIR,SINE,MIR,-50,218,103,43201294,43201540 -5 - chr20 43202581 43202599 chr20,43202581,43202737,+,MIRb,SINE,MIR,85,262,0,43202497,43202737 +5 + chr20 43895133 43895294 chr20,43895133,43895294,+,MIRb,SINE,MIR,1,167,-101,43895133,43895395 +6 + chr20 43895402 43895468 chr20,43895402,43895533,+,MER5B,DNA,hAT-Charlie,18,158,-20,43895385,43895553 +5 + chr20 44214888 44215003 chr20,44214870,44215045,-,AluSz6,SINE,Alu,-16,296,116,44214854,44215160 -1 - chr20 44223719 44223859 chr20,44223489,44223859,-,L1ME4a,LINE,L1,-218,5906,5505,44223271,44229363 -2 - chr20 44224821 44224891 chr20,44224728,44224891,-,MIRc,SINE,MIR,-27,241,42,44224701,44224932 -2 - chr20 44225079 44225304 chr20,44225079,44225304,+,MIRc,SINE,MIR,14,238,-30,44225066,44225334 +6 + chr20 44225381 44225440 chr20,44225381,44225440,+,(TTTTTTC)n,Simple_repeat,Simple_repeat,1,60,0,44225381,44225440 +6 + chr20 44225481 44225733 chr20,44225481,44225733,-,L1PA16,LINE,L1,-1,6165,5912,44225480,44231644 -6 - chr20 44225733 44226015 chr20,44225733,44226015,+,AluSc8,SINE,Alu,30,311,0,44225704,44226015 +6 + chr20 44226015 44226027 chr20,44226015,44226306,-,L1PA16,LINE,L1,-255,5911,5629,44225760,44231934 -5 - chr20 44347552 44347795 chr20,44347539,44347795,-,MIRc,SINE,MIR,-1,267,6,44347538,44347800 +5 - chr20 44351868 44351944 chr20,44351807,44351944,-,MIR3,SINE,MIR,-52,156,15,44351755,44351958 +4 - chr20 44351984 44352099 chr20,44351984,44352099,+,(TCTCTG)n,Simple_repeat,Simple_repeat,1,121,0,44351984,44352099 -6 + chr20 44355019 44355178 chr20,44355003,44355178,+,L2b,LINE,L2,3221,3421,-5,44351783,44355183 -4 + chr20 44372888 44373009 chr20,44372888,44373122,+,MIRc,SINE,MIR,4,264,-4,44372885,44373126 -2 + chr20 44377761 44377850 chr20,44377761,44377850,-,AluYj4,SINE,Alu,0,311,223,44377761,44378072 +6 - chr20 44377854 44377884 chr20,44377854,44378241,-,L1ME3Cz,LINE,L1,-465,459,18,44377389,44378258 +2 - chr20 44384523 44384569 chr20,44384438,44384569,-,MLT1I,LTR,ERVL-MaLR,-4,407,273,44384434,44384841 +4 - chr20 44384609 44384672 chr20,44384609,44384776,-,MLT1I,LTR,ERVL-MaLR,-230,181,14,44384379,44384789 +1 - chr20 44389637 44389863 chr20,44389637,44389863,-,L2c,LINE,L2,-1,3386,3102,44389636,44392964 +6 - chr20 44391513 44391537 chr20,44391513,44391669,+,MIRb,SINE,MIR,3,179,-89,44391511,44391758 -1 + chr20 44434197 44434271 chr20,44434173,44434271,+,MIRb,SINE,MIR,90,200,-68,44434084,44434339 +1 + chr20 44448777 44448791 chr20,44448486,44448791,+,AluSz,SINE,Alu,1,303,-9,44448486,44448800 -5 + chr20 44448892 44448999 chr20,44448892,44448999,+,MIRb,SINE,MIR,115,223,-45,44448778,44449044 -6 + chr20 44450054 44450092 chr20,44450054,44450112,+,L2b,LINE,L2,3313,3370,-5,44446742,44450117 -1 + chr20 44656451 44656710 chr20,44656413,44656710,-,LTR16C,LTR,ERVL,-7,482,150,44656406,44656859 +5 - chr20 44656836 44656934 chr20,44656836,44656934,+,LTR33,LTR,ERVL,417,515,0,44656420,44656934 -6 + chr20 44656934 44657051 chr20,44656934,44657144,+,L1M6,LINE,L1,1617,1836,-4660,44655318,44661804 -2 + chr20 44658995 44659042 chr20,44658975,44659042,-,MIRb,SINE,MIR,0,268,204,44658975,44659245 +4 - chr20 44659042 44659181 chr20,44659042,44659408,-,MSTD,LTR,ERVL-MaLR,0,396,1,44659042,44659408 +2 - chr20 44659711 44659778 chr20,44659500,44659897,-,HAL1,LINE,L1,-2112,395,1,44657388,44659897 +3 - chr20 44694892 44694933 chr20,44694764,44694933,-,MIRb,SINE,MIR,-52,210,45,44694712,44694977 +5 - chr20 44694915 44695171 chr20,44694915,44695171,-,MIRb,SINE,MIR,-2,266,1,44694913,44695171 +5 - chr20 44695331 44695507 chr20,44695331,44695599,+,L3,LINE,CR1,3828,4096,-3,44691504,44695602 -2 + chr20 44696003 44696096 chr20,44695924,44696275,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,44695924,44696275 +1 - chr20 44711943 44711988 chr20,44711943,44712087,+,L1ME3,LINE,L1,5939,6092,-70,44706005,44712157 -2 + chr20 44738820 44738934 chr20,44738735,44739078,-,MLT1J2,LTR,ERVL-MaLR,0,448,64,44738735,44739141 +1 - chr20 44746642 44746747 chr20,44746475,44746747,+,MIRb,SINE,MIR,15,268,0,44746461,44746747 +1 + chr20 44746766 44746863 chr20,44746766,44746863,+,L2a,LINE,L2,3315,3424,-2,44743452,44746865 +6 + chr20 44747165 44747201 chr20,44747165,44747411,+,MIRb,SINE,MIR,17,268,0,44747149,44747411 +5 + chr20 44963794 44964033 chr20,44963794,44964033,-,L1MB8,LINE,L1,0,6178,5927,44963794,44969959 +5 - chr20 44964203 44964329 chr20,44964203,44964329,-,AluJb,SINE,Alu,-165,147,1,44964038,44964329 +6 - chr20 44964346 44964519 chr20,44964346,44964519,-,MER8,DNA,TcMar-Tigger,0,239,63,44964346,44964581 +6 - chr20 44964590 44964640 chr20,44964590,44964640,-,MER8,DNA,TcMar-Tigger,-189,50,1,44964401,44964640 +6 - chr20 44964714 44964876 chr20,44964714,44964876,-,MER3,DNA,hAT-Charlie,-23,186,10,44964691,44964885 +6 - chr20 44965025 44965157 chr20,44965025,44965157,+,AluJo,SINE,Alu,2,133,-179,44965024,44965336 -6 + chr20 44965175 44965346 chr20,44965175,44965346,+,MIRb,SINE,MIR,36,254,-14,44965140,44965360 -6 + chr20 45345131 45345218 chr20,45345131,45345218,-,L2c,LINE,L2,0,3387,3298,45345131,45348515 +6 - chr20 45345332 45345390 chr20,45345332,45345390,-,X6B_LINE,LINE,CR1,-270,802,737,45345062,45346126 +6 - chr20 45435299 45435508 chr20,45435299,45435508,-,L2a,LINE,L2,-38,3388,3186,45435261,45438693 +6 - chr20 45435508 45435705 chr20,45435508,45435705,-,L1PA17,LINE,L1,-18,6148,5948,45435490,45441652 +6 - chr20 45435705 45435929 chr20,45435705,45435929,-,L2a,LINE,L2,-241,3185,2921,45435464,45438849 +6 - chr20 45445605 45446221 chr20,45445605,45446221,-,L2a,LINE,L2,0,3426,2708,45445605,45448928 -6 - chr20 45446350 45446457 chr20,45446350,45446457,-,L1ME4a,LINE,L1,-5,6119,6008,45446345,45452464 -6 - chr20 45446740 45446900 chr20,45446740,45446900,+,MER96B,DNA,hAT-Tip100,9,179,-238,45446732,45447138 +6 + chr20 45447232 45447518 chr20,45447232,45447518,-,AluSx,SINE,Alu,-18,294,1,45447214,45447518 -1 - chr20 45447232 45447518 chr20,45447232,45447518,-,AluSx,SINE,Alu,-18,294,1,45447214,45447518 +1 - chr20 45447959 45448040 chr20,45447959,45448040,-,MIR3,SINE,MIR,-15,193,118,45447944,45448157 -6 - chr20 45447959 45448040 chr20,45447959,45448040,-,MIR3,SINE,MIR,-15,193,118,45447944,45448157 +6 - chr20 45448424 45448542 chr20,45448424,45448542,+,L2a,LINE,L2,3311,3426,0,45445114,45448542 +6 + chr20 45490035 45490209 chr20,45490035,45490209,-,MER117,DNA,hAT-Charlie,0,197,1,45490035,45490209 -6 - chr20 46013857 46013928 chr20,46013857,46013928,-,MER91A,DNA,hAT-Tip100,-3,193,116,46013854,46014043 +6 - chr20 46014599 46014711 chr20,46014599,46014711,-,MIRc,SINE,MIR,-147,121,9,46014452,46014719 +6 - chr20 46014737 46014788 chr20,46014737,46014808,-,L2c,LINE,L2,-2,3385,3313,46014735,46018120 +2 - chr20 46019731 46019848 chr20,46019573,46019885,+,AluSx1,SINE,Alu,1,312,0,46019573,46019885 -3 + chr20 46020619 46020672 chr20,46020239,46020672,-,L1ME3A,LINE,L1,-202,5971,5528,46020037,46026199 +5 - chr20 46020679 46020905 chr20,46020679,46021403,+,L2a,LINE,L2,2559,3369,-57,46018121,46021460 -2 + chr20 46021900 46021954 chr20,46021900,46021954,+,G-rich,Low_complexity,Low_complexity,1,56,0,46021900,46021954 -6 + chr20 46169240 46169322 chr20,46169240,46169322,+,(GCAT)n,Simple_repeat,Simple_repeat,1,84,0,46169240,46169322 -6 + chr20 46169749 46169764 chr20,46169749,46169764,+,(CACAGA)n,Simple_repeat,Simple_repeat,1,48,0,46169749,46169764 -6 + chr20 46169764 46169796 chr20,46169764,46169796,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,46169764,46169796 -6 + chr20 46169989 46170075 chr20,46169989,46170123,+,MIRb,SINE,MIR,87,224,-44,46169903,46170167 -2 + chr20 46170963 46171145 chr20,46170963,46171145,+,MIR,SINE,MIR,29,223,-39,46170935,46171184 -6 + chr20 46171159 46171237 chr20,46171159,46171268,-,MIR,SINE,MIR,-72,190,82,46171087,46171349 +1 - chr20 46364551 46364565 chr20,46364530,46364565,+,(GTCTG)n,Simple_repeat,Simple_repeat,1,35,0,46364530,46364565 +1 + chr20 46681676 46682040 chr20,46681627,46682040,-,MSTC,LTR,ERVL-MaLR,0,428,1,46681627,46682040 +5 - chr20 46682101 46682203 chr20,46682101,46682203,+,MER96B,DNA,hAT-Tip100,3,122,-295,46682099,46682498 -6 + chr20 46682203 46682262 chr20,46682203,46682262,+,MER58A,DNA,hAT-Charlie,7,76,-148,46682197,46682410 -6 + chr20 47320436 47320740 chr20,47320436,47320740,+,AluSx,SINE,Alu,1,299,-13,47320436,47320753 +6 + chr20 47391929 47392097 chr20,47391925,47392274,-,MLT1J,LTR,ERVL-MaLR,-63,449,81,47391862,47392354 +5 - chr20 47397231 47397345 chr20,47397231,47397385,-,MLT1J,LTR,ERVL-MaLR,-215,395,231,47397016,47397615 +2 - chr20 47412070 47412149 chr20,47412027,47412149,-,LTR16E1,LTR,ERVL,-221,317,199,47411806,47412347 +4 - chr20 47412193 47412327 chr20,47412193,47412416,+,AluJr,SINE,Alu,86,297,-15,47412108,47412431 -1 + chr20 47678179 47678272 chr20,47678179,47678377,+,MIRb,SINE,MIR,37,244,-24,47678143,47678401 +4 + chr20 47684869 47685220 chr20,47684869,47685220,+,MER113,DNA,hAT-Charlie,150,514,-7,47684720,47685227 +6 + chr20 47685229 47685524 chr20,47685229,47685524,-,AluSc8,SINE,Alu,-14,297,1,47685215,47685524 -6 - chr20 47685524 47685813 chr20,47685524,47685813,-,AluSx,SINE,Alu,-20,292,2,47685504,47685814 -6 - chr20 47685935 47686136 chr20,47685935,47686136,+,MIR,SINE,MIR,39,262,0,47685897,47686136 +6 + chr20 47686193 47686280 chr20,47686193,47686280,+,MIRc,SINE,MIR,65,151,-117,47686129,47686397 +6 + chr20 47950907 47950924 chr20,47950907,47951036,-,MER74A,LTR,ERVL,-14,544,417,47950893,47951452 -4 - chr20 47951757 47951853 chr20,47951476,47951853,-,MER74A,LTR,ERVL,-127,431,2,47951349,47951854 -2 - chr20 47951854 47951903 chr20,47951854,47951903,+,(CA)n,Simple_repeat,Simple_repeat,1,49,0,47951854,47951903 +6 + chr20 47980488 47980626 chr20,47980430,47980626,+,MLT1H,LTR,ERVL-MaLR,31,186,-303,47980400,47980929 -5 + chr20 47980767 47980778 chr20,47980767,47980876,+,MLT1H,LTR,ERVL-MaLR,290,411,0,47980478,47980876 -2 + chr20 48073869 48073964 chr20,48073821,48073964,+,LTR33,LTR,ERVL,33,188,-327,48073789,48074291 +1 + chr20 48073987 48074188 chr20,48073987,48074235,+,LTR33,LTR,ERVL,234,513,-2,48073754,48074237 +5 + chr20 48359950 48360150 chr20,48359855,48360168,+,L2b,LINE,L2,2931,3275,-100,48356925,48360268 +1 + chr20 48360756 48360829 chr20,48360756,48360829,-,L2c,LINE,L2,-10,3377,3300,48360746,48364128 -6 - chr20 48365647 48365719 chr20,48365581,48365719,+,MIRb,SINE,MIR,91,227,-41,48365491,48365760 +1 + chr20 48366474 48366573 chr20,48366376,48366573,-,MLT1H2,LTR,ERVL-MaLR,0,549,277,48366376,48366849 -2 - chr20 48366736 48366821 chr20,48366626,48366821,-,MLT1H2,LTR,ERVL-MaLR,-303,186,31,48366323,48366851 -2 - chr20 48366919 48367059 chr20,48366919,48367102,+,MIR,SINE,MIR,93,268,0,48366827,48367102 +4 + chr20 48369582 48369672 chr20,48369582,48369672,+,MER20,DNA,hAT-Charlie,1,91,-128,48369582,48369800 +6 + chr20 48370171 48370497 chr20,48370171,48370497,+,LTR48,LTR,ERV1,1,361,-426,48370171,48370923 +6 + chr20 48370497 48370629 chr20,48370497,48370789,+,MER34C2,LTR,ERV1,248,787,0,48370250,48370789 +5 + chr20 48410447 48410554 chr20,48409801,48410554,+,L2a,LINE,L2,2572,3422,-4,48407230,48410558 +2 + chr20 48821962 48822029 chr20,48821962,48822032,+,L2a,LINE,L2,3345,3412,-14,48818618,48822046 -2 + chr20 48849445 48849458 chr20,48849445,48849565,+,L2a,LINE,L2,3284,3421,-5,48846162,48849570 -1 + chr20 49045861 49045956 chr20,49045861,49045956,+,AluSz6,SINE,Alu,1,95,-217,49045861,49046173 -6 + chr20 49281110 49281181 chr20,49281110,49281576,-,LTR10B1,LTR,ERV1,0,547,2,49281110,49281577 -5 - chr20 49281752 49281818 chr20,49281577,49282133,-,HERVIP10B3-int,LTR,ERV1,0,7603,7026,49281577,49289158 -3 - chr20 49290888 49291148 chr20,49290798,49291486,+,L2a,LINE,L2,2432,3218,-208,49288367,49291694 +1 + chr20 50040716 50040749 chr20,50040565,50040749,+,MIR,SINE,MIR,20,201,-67,50040546,50040816 -5 + chr20 50041377 50041504 chr20,50041350,50041626,+,L2a,LINE,L2,3132,3425,-1,50038219,50041627 -1 + chr20 50162765 50163095 chr20,50162763,50163125,-,MLT1J,LTR,ERVL-MaLR,-64,448,28,50162699,50163152 +5 - chr20 50163464 50163591 chr20,50163399,50163591,-,AluSp,SINE,Alu,-122,191,1,50163277,50163591 +5 - chr20 50163662 50163976 chr20,50163662,50163976,-,MLT1H,LTR,ERVL-MaLR,-117,432,124,50163545,50164099 +6 - chr20 50166362 50166406 chr20,50166361,50166406,+,(CTTCT)n,Simple_repeat,Simple_repeat,1,47,0,50166361,50166406 +1 + chr20 50166406 50166636 chr20,50166406,50166714,-,L1MB3,LINE,L1,-328,5855,5547,50166078,50172260 -4 - chr20 50169346 50169448 chr20,50169329,50169448,+,L1MC,LINE,L1,5623,5743,-2139,50163707,50171587 +1 + chr20 50171622 50171742 chr20,50171556,50171812,+,MLT1B,LTR,ERVL-MaLR,103,372,-2,50171454,50171814 +5 + chr20 50172550 50172756 chr20,50172372,50172756,+,LTR33A_,LTR,ERVL,13,527,-4,50172360,50172760 +1 + chr20 50172923 50173017 chr20,50172920,50173169,+,L1MB4,LINE,L1,5818,6097,-77,50167103,50173246 +3 + chr20 50173202 50173370 chr20,50173169,50173475,-,AluJo,SINE,Alu,-6,306,6,50173163,50173480 -5 - chr20 50184598 50184620 chr20,50184356,50184620,-,L1MB3,LINE,L1,-446,5737,5433,50183910,50190052 +5 - chr20 50184620 50184784 chr20,50184620,50184784,-,L1MA5,LINE,L1,0,6300,6134,50184620,50190917 +6 - chr20 50184791 50185033 chr20,50184791,50185033,-,AluSx,SINE,Alu,-16,296,55,50184775,50185087 +6 - chr20 50185033 50185274 chr20,50185033,50185274,-,L1MB3,LINE,L1,-751,5432,5208,50184282,50190481 +6 - chr20 50185287 50185589 chr20,50185287,50185589,-,AluSz,SINE,Alu,-16,296,1,50185271,50185589 +6 - chr20 50185593 50185778 chr20,50185593,50185778,+,L2a,LINE,L2,2968,3168,-258,50182626,50186036 -6 + chr20 50185800 50186008 chr20,50185800,50186008,+,AluJb,SINE,Alu,85,303,-9,50185716,50186017 -6 + chr20 50186031 50186249 chr20,50186031,50186249,+,L2a,LINE,L2,3189,3425,-1,50182843,50186250 -6 + chr20 50188543 50188627 chr20,50188525,50188834,-,L2b,LINE,L2,-1,3374,3041,50188524,50191874 +3 - chr20 50189998 50190057 chr20,50189967,50190057,-,MIR3,SINE,MIR,-137,131,34,50189830,50190090 +4 - chr20 50267486 50267534 chr20,50267380,50267534,-,MIRb,SINE,MIR,-48,220,57,50267332,50267590 -1 - chr20 50275646 50275697 chr20,50275508,50275697,-,MIRb,SINE,MIR,-2,260,80,50275506,50275776 -1 - chr20 50277491 50277598 chr20,50276784,50277598,+,L2a,LINE,L2,2447,3412,-14,50274338,50277612 +1 + chr20 50278177 50278653 chr20,50278142,50278653,+,L2a,LINE,L2,2564,3166,-260,50275579,50278913 +5 + chr20 50278695 50278802 chr20,50278695,50278802,+,L2a,LINE,L2,3318,3426,0,50275378,50278802 +6 + chr20 50278752 50278952 chr20,50278752,50278952,-,MIRb,SINE,MIR,-35,233,14,50278717,50278965 -6 - chr20 50279348 50279462 chr20,50279348,50279462,+,MIRc,SINE,MIR,57,165,-103,50279292,50279565 +6 + chr20 50279462 50279778 chr20,50279462,50279778,+,AluJr,SINE,Alu,1,311,-1,50279462,50279779 +6 + chr20 50279778 50279795 chr20,50279778,50279850,+,MIRc,SINE,MIR,166,227,-41,50279613,50279891 +5 + chr20 50298156 50298413 chr20,50298152,50298489,-,L1ME1,LINE,L1,-11,6168,5844,50298141,50304332 -3 - chr20 50310974 50311280 chr20,50310962,50311280,+,MSTD,LTR,ERVL-MaLR,73,396,0,50310890,50311280 +1 + chr20 50310962 50311249 chr20,50310962,50311280,+,MSTD,LTR,ERVL-MaLR,73,396,0,50310890,50311280 -1 + chr20 50311282 50311374 chr20,50311282,50311374,-,MIR3,SINE,MIR,-66,142,48,50311216,50311421 -6 - chr20 50311637 50311706 chr20,50311637,50311722,-,MIRc,SINE,MIR,-71,197,121,50311566,50311842 -4 - chr20 50311913 50312014 chr20,50311913,50312053,+,MIRb,SINE,MIR,26,181,-87,50311888,50312140 +5 + chr20 50312352 50312430 chr20,50312090,50312450,+,L2a,LINE,L2,2977,3414,-12,50309114,50312462 +3 + chr20 50313154 50313246 chr20,50313154,50313246,-,MIR3,SINE,MIR,-117,151,62,50313037,50313307 +6 - chr20 50313300 50313754 chr20,50313276,50313754,+,MLT1K,LTR,ERVL-MaLR,31,591,-4,50313246,50313758 +2 + chr20 50313276 50313754 chr20,50313276,50313754,+,MLT1K,LTR,ERVL-MaLR,31,591,-4,50313246,50313758 -6 + chr20 50313852 50313958 chr20,50313852,50313958,-,L2c,LINE,L2,-244,3143,3031,50313608,50316988 -6 - chr20 50313852 50313958 chr20,50313852,50313958,-,L2c,LINE,L2,-244,3143,3031,50313608,50316988 +6 - chr20 50313967 50314019 chr20,50313967,50314019,-,L2b,LINE,L2,-21,3354,3303,50313946,50317321 -6 - chr20 50313967 50314019 chr20,50313967,50314019,-,L2b,LINE,L2,-21,3354,3303,50313946,50317321 +6 - chr20 50314173 50314427 chr20,50314173,50314427,+,MER113,DNA,hAT-Charlie,21,282,-239,50314153,50314666 +6 + chr20 50314173 50314356 chr20,50314173,50314427,+,MER113,DNA,hAT-Charlie,21,282,-239,50314153,50314666 -2 + chr20 50314486 50314922 chr20,50314486,50315449,-,L1ME1,LINE,L1,-159,6083,5186,50314327,50320634 -5 - chr20 50321075 50321121 chr20,50320633,50321121,+,L2a,LINE,L2,2644,3157,-269,50317990,50321390 -4 + chr20 50572860 50573058 chr20,50572860,50573058,-,MamRTE1,LINE,RTE-BovB,-463,3349,3104,50572397,50576161 +6 - chr20 50574130 50574264 chr20,50574130,50574264,-,MamRTE1,LINE,RTE-BovB,-1099,2713,2578,50573031,50576841 +6 - chr20 50653202 50653222 chr20,50652716,50653441,+,L1MB7,LINE,L1,5419,6123,-61,50647298,50653502 +1 + chr20 50653946 50653995 chr20,50653924,50654126,+,L2a,LINE,L2,3099,3308,-118,50650826,50654244 +3 + chr20 50659875 50660043 chr20,50659875,50660043,+,MLT1M,LTR,ERVL-MaLR,114,283,-389,50659762,50660432 +6 + chr20 50660175 50660215 chr20,50660175,50660215,+,MLT1M,LTR,ERVL-MaLR,453,491,-104,50659723,50660319 +6 + chr20 50660215 50660291 chr20,50660215,50660672,-,MSTB2,LTR,ERVL-MaLR,0,457,1,50660215,50660672 -5 - chr20 50944402 50944687 chr20,50944402,50944687,-,L2b,LINE,L2,-249,3138,2807,50944153,50947493 -6 - chr20 50944891 50945134 chr20,50944891,50945143,-,L1M5,LINE,L1,-2083,4063,3778,50942808,50948920 -5 - chr20 50999378 50999479 chr20,50999378,50999939,-,L2a,LINE,L2,-226,3200,2572,50999152,51002510 -4 - chr20 51000510 51000591 chr20,51000308,51000591,+,L2a,LINE,L2,3029,3359,-67,50997280,51000658 +2 + chr20 51098138 51098183 chr20,51097887,51098183,-,AluJr,SINE,Alu,-18,294,1,51097869,51098183 -1 - chr20 51832316 51832751 chr20,51832316,51832751,+,LTR33,LTR,ERVL,1,461,-54,51832316,51832805 -6 + chr20 51832751 51832915 chr20,51832751,51832915,+,AluSc8,SINE,Alu,136,301,-10,51832616,51832925 -6 + chr20 51832989 51833293 chr20,51832989,51833293,-,AluSz,SINE,Alu,-3,309,5,51832986,51833297 +6 - chr20 51833566 51833592 chr20,51833566,51833592,+,MIR,SINE,MIR,3,33,-229,51833564,51833821 -6 + chr20 51833592 51833930 chr20,51833592,51833930,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,51833590,51833930 +6 - chr20 51833930 51833969 chr20,51833930,51833982,+,MIR,SINE,MIR,34,86,-176,51833897,51834158 -2 + chr20 51862825 51862912 chr20,51862738,51863120,-,MLT1J,LTR,ERVL-MaLR,-66,446,1,51862672,51863120 +1 - chr20 52210645 52210739 chr20,52210359,52210739,-,MER48,LTR,ERV1,0,407,1,52210359,52210739 -1 - chr20 52234769 52234932 chr20,52234194,52235550,-,FordPrefect,DNA,hAT-Tip100,-77,1606,95,52234117,52235644 -3 - chr20 52355322 52355359 chr20,52355029,52355393,-,L1ME1,LINE,L1,-5548,852,496,52349481,52355888 -3 - chr20 52452388 52452466 chr20,52452388,52452466,+,MER5A1,DNA,hAT-Charlie,85,161,-5,52452304,52452471 -6 + chr20 52452499 52452527 chr20,52452499,52452610,-,MER5B,DNA,hAT-Charlie,-83,95,1,52452416,52452610 +2 - chr20 52455578 52455619 chr20,52455496,52455758,-,MSTB1,LTR,ERVL-MaLR,0,432,162,52455496,52455919 +1 - chr20 52620890 52620969 chr20,52620890,52620969,-,L2a,LINE,L2,-13,3413,3326,52620877,52624294 -6 - chr20 52621001 52621146 chr20,52621001,52621160,-,MIR,SINE,MIR,-12,250,64,52620989,52621223 -4 - chr20 52621887 52622000 chr20,52621887,52622185,+,MLT1K,LTR,ERVL-MaLR,278,595,0,52621610,52622185 +4 + chr20 52647136 52647469 chr20,52647136,52647469,-,LTR16C,LTR,ERVL,0,489,152,52647136,52647620 -6 - chr20 52647613 52647713 chr20,52647613,52647713,-,L2b,LINE,L2,-35,3352,3245,52647578,52650957 -6 - chr20 52647783 52647998 chr20,52647783,52647998,-,MIR,SINE,MIR,-24,238,6,52647759,52648003 -6 - chr20 52648013 52648230 chr20,52648013,52648230,-,MER20,DNA,hAT-Charlie,0,219,1,52648013,52648230 -6 - chr20 52648442 52648470 chr20,52648442,52648470,+,(TG)n,Simple_repeat,Simple_repeat,1,28,0,52648442,52648470 +6 + chr20 52649252 52649343 chr20,52649252,52649343,+,MIRb,SINE,MIR,26,110,-158,52649227,52649501 +6 + chr20 52649343 52649811 chr20,52649343,52649811,+,MLT1D,LTR,ERVL-MaLR,1,505,0,52649343,52649811 +6 + chr20 52649811 52649940 chr20,52649811,52649940,+,MIRb,SINE,MIR,111,247,-21,52649701,52649961 +6 + chr20 52650040 52650431 chr20,52650040,52650509,+,MLT2C2,LTR,ERVL,1,464,0,52650040,52650509 +5 + chr20 52671917 52671960 chr20,52671917,52673274,+,Charlie1a,DNA,hAT-Charlie,27,1455,0,52671891,52673274 +1 + chr20 52677020 52677108 chr20,52676799,52677187,+,LTR33,LTR,ERVL,108,512,-3,52676692,52677190 +3 + chr20 52681405 52681578 chr20,52681370,52681827,+,L4_A_Mam,LINE,RTE-X,3608,4089,-901,52677763,52682728 +5 + chr20 52690522 52690614 chr20,52690346,52690636,-,AluJb,SINE,Alu,-28,284,1,52690318,52690636 -5 - chr20 52690741 52690778 chr20,52690649,52690778,-,L1MD,LINE,L1,-918,5228,5079,52689731,52695856 -2 - chr20 52858440 52858507 chr20,52858440,52858582,+,MIR,SINE,MIR,15,154,-108,52858426,52858690 -2 + chr20 52862746 52862849 chr20,52862746,52862849,-,UCON132b,DNA,hAT-Tip100,0,148,57,52862746,52862905 +6 - chr20 52862833 52862855 chr20,52862833,52862974,-,MamTip2,DNA,hAT-Tip100,-167,138,1,52862666,52862974 +1 - chr20 53168643 53168830 chr20,53168592,53168830,-,MLT1J1,LTR,ERVL-MaLR,0,444,114,53168592,53168943 +5 - chr20 53198180 53198245 chr20,53198121,53198245,-,Charlie4z,DNA,hAT-Charlie,-33,134,5,53198088,53198249 +4 - chr20 53208589 53208705 chr20,53208556,53208767,-,MIR,SINE,MIR,-1,261,52,53208555,53208818 +1 - chr20 53397661 53398144 chr20,53396919,53398144,+,L1PA5,LINE,L1,4936,6154,0,53391984,53398144 -5 + chr20 53398184 53398260 chr20,53398184,53398260,-,MIRc,SINE,MIR,-149,119,35,53398035,53398294 +6 - chr20 53398399 53398468 chr20,53398399,53398468,+,MIR,SINE,MIR,15,82,-180,53398385,53398648 -6 + chr20 53398468 53398768 chr20,53398468,53398768,+,AluJr,SINE,Alu,1,298,-14,53398468,53398782 -6 + chr20 53398768 53398938 chr20,53398768,53398938,+,MIR,SINE,MIR,83,252,-10,53398686,53398948 -6 + chr20 53399052 53399423 chr20,53399052,53399423,+,UCON20,Unknown,Unknown,305,677,-92,53398748,53399515 -6 + chr20 53400420 53400487 chr20,53400420,53400648,-,MIR,SINE,MIR,-25,237,2,53400395,53400649 +2 - chr20 53401134 53401234 chr20,53401134,53401254,-,L2a,LINE,L2,-35,3391,3269,53401099,53404522 +2 - chr20 53455256 53455409 chr20,53455195,53455409,+,L2a,LINE,L2,3180,3411,-15,53452016,53455424 -4 + chr20 53461469 53461566 chr20,53455562,53461566,-,L1PA3,LINE,L1,0,6155,124,53455562,53461689 +4 - chr20 53504109 53504314 chr20,53503851,53509874,+,L1PA2,LINE,L1,127,6153,-2,53503725,53509876 -1 + chr20 53552862 53553087 chr20,53552862,53553311,+,L1MD3,LINE,L1,7510,7973,-22,53545353,53553333 +4 + chr20 53556638 53556755 chr20,53556615,53556915,-,AluJb,SINE,Alu,-15,297,1,53556600,53556915 -3 - chr20 53562749 53562867 chr20,53562716,53563015,-,AluSx,SINE,Alu,-4,308,1,53562712,53563015 -3 - chr20 53574379 53574484 chr20,53574379,53574484,-,L2c,LINE,L2,-21,3354,3246,53574358,53577729 -6 - chr20 53574512 53574824 chr20,53574512,53574824,+,AluSq,SINE,Alu,1,313,0,53574512,53574824 +6 + chr20 53575061 53575191 chr20,53575061,53575191,+,AluJr,SINE,Alu,1,131,-181,53575061,53575372 +6 + chr20 53575200 53575308 chr20,53575200,53575482,+,AluJr4,SINE,Alu,2,292,-20,53575199,53575502 +5 + chr20 53801279 53801318 chr20,53801279,53801485,-,MIRb,SINE,MIR,-36,226,6,53801243,53801490 +1 - chr20 53940208 53940248 chr20,53940208,53940248,+,(A)n,Simple_repeat,Simple_repeat,1,40,0,53940208,53940248 +6 + chr20 55420462 55420562 chr20,55420462,55420562,+,L2a,LINE,L2,2619,2713,-706,55417844,55421268 -6 + chr20 55420556 55420924 chr20,55420556,55420924,+,L2a,LINE,L2,2990,3419,-7,55417567,55420931 -6 + chr20 55421337 55421635 chr20,55421337,55421635,+,AluY,SINE,Alu,1,298,-13,55421337,55421648 -6 + chr20 55423659 55423949 chr20,55423659,55423949,-,L2c,LINE,L2,-2,3373,3120,55423657,55427068 -6 - chr20 55425871 55426008 chr20,55425843,55426008,-,MIR,SINE,MIR,-36,226,39,55425807,55426046 -2 - chr20 55426063 55426199 chr20,55426063,55426199,-,L1ME4b,LINE,L1,-415,582,448,55425648,55426646 -6 - chr20 55426411 55426447 chr20,55426411,55426447,+,L2b,LINE,L2,3340,3375,0,55423072,55426447 +5 + chr20 55426541 55426663 chr20,55426541,55426663,-,MIRb,SINE,MIR,-111,157,20,55426430,55426682 -6 - chr20 55426780 55426790 chr20,55426780,55427005,-,MIRb,SINE,MIR,-18,250,34,55426762,55427038 -5 - chr20 55448865 55448908 chr20,55448104,55448908,-,L1M4a1,LINE,L1,-1704,875,17,55446400,55448924 -2 - chr20 55451770 55451849 chr20,55451770,55451889,+,MER5A,DNA,hAT-Charlie,44,167,-22,55451727,55451911 +4 + chr20 55452337 55452433 chr20,55452141,55452515,+,THE1C,LTR,ERVL-MaLR,1,375,0,55452141,55452515 +3 + chr20 55466817 55466940 chr20,55466659,55467136,+,L1MC3,LINE,L1,7298,7781,-4,55459362,55467140 +3 + chr20 55504906 55504934 chr20,55504726,55504934,-,Helitron3Na_Mam,RC,Helitron,-287,199,1,55504439,55504934 +5 - chr20 56296007 56296185 chr20,56296007,56296185,+,L2c,LINE,L2,2957,3149,-238,56293051,56296423 -6 + chr20 56296313 56296347 chr20,56296313,56296751,-,MLT1K,LTR,ERVL-MaLR,-93,502,19,56296220,56296769 +2 - chr20 56299089 56299117 chr20,56299034,56299117,-,MIRb,SINE,MIR,-9,259,177,56299025,56299293 +4 - chr20 56522252 56522265 chr20,56521996,56522265,+,AluJo,SINE,Alu,1,292,-20,56521996,56522285 +1 + chr20 56522664 56522967 chr20,56522664,56522967,-,AluSx,SINE,Alu,-9,303,1,56522655,56522967 -6 - chr20 56523468 56523499 chr20,56523468,56523763,-,AluSx,SINE,Alu,-13,299,1,56523455,56523763 -5 - chr20 56577755 56577807 chr20,56577755,56577807,-,MIRb,SINE,MIR,-191,77,27,56577564,56577833 -6 - chr20 56577809 56577855 chr20,56577809,56577855,+,MIRc,SINE,MIR,48,94,-174,56577762,56578029 +6 + chr20 56579391 56579456 chr20,56579347,56579456,-,MIR3,SINE,MIR,-34,174,70,56579313,56579525 -2 - chr20 56579539 56579553 chr20,56579539,56579727,-,MIRb,SINE,MIR,-33,235,28,56579506,56579754 -4 - chr20 56596054 56596126 chr20,56596039,56596131,-,MER5A,DNA,hAT-Charlie,-68,121,32,56595971,56596162 -5 - chr20 56598503 56598579 chr20,56598446,56598579,+,MER2,DNA,TcMar-Tigger,214,345,0,56598233,56598579 +2 + chr20 56731033 56731088 chr20,56730933,56731088,+,Charlie8,DNA,hAT-Charlie,32,202,-2226,56730902,56733314 +2 + chr20 57106089 57106202 chr20,57106080,57106719,-,MLT1K,LTR,ERVL-MaLR,0,595,1,57106080,57106719 -3 - chr20 57107083 57107128 chr20,57107083,57107541,-,MLT1D,LTR,ERVL-MaLR,0,505,1,57107083,57107541 -5 - chr20 57117122 57117195 chr20,57117122,57117344,-,MLT1K,LTR,ERVL-MaLR,-19,576,325,57117103,57117668 -4 - chr20 57121603 57121811 chr20,57121444,57121811,-,MLT1J,LTR,ERVL-MaLR,0,512,107,57121444,57121917 -2 - chr20 57121811 57122092 chr20,57121811,57122110,-,AluSx1,SINE,Alu,-13,299,1,57121798,57122110 -5 - chr20 57161822 57161926 chr20,57161781,57161926,-,MER45A,DNA,hAT-Tip100,0,178,33,57161781,57161958 -1 - chr20 57163023 57163660 chr20,57163023,57163660,+,MLT1E1A,LTR,ERVL-MaLR,1,680,0,57163023,57163660 +6 + chr20 57163706 57163775 chr20,57163706,57163887,+,MLT1J,LTR,ERVL-MaLR,52,268,-244,57163655,57164131 +5 + chr20 57214872 57214919 chr20,57214549,57214919,+,L2b,LINE,L2,3002,3372,-3,57211548,57214922 +1 + chr20 57266797 57267022 chr20,57266787,57267022,-,L2c,LINE,L2,-10,3365,3115,57266777,57270136 -1 - chr20 57271998 57272052 chr20,57271915,57272130,-,MIR,SINE,MIR,-46,216,4,57271869,57272133 -3 - chr20 57282243 57282519 chr20,57282215,57282519,-,AluSx1,SINE,Alu,-10,302,1,57282205,57282519 -2 - chr20 57384160 57384305 chr20,57384138,57384305,-,AluSx,SINE,Alu,-9,303,137,57384129,57384441 +5 - chr20 57599695 57599726 chr20,57599416,57599726,-,MER2,DNA,TcMar-Tigger,0,345,20,57599416,57599745 +5 - chr20 57599877 57599904 chr20,57599877,57599904,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,57599877,57599904 -6 + chr20 57599946 57600110 chr20,57599946,57600110,+,MLT1K,LTR,ERVL-MaLR,410,578,-17,57599537,57600127 -6 + chr20 57600987 57601200 chr20,57600987,57601427,+,L2b,LINE,L2,2913,3355,-20,57598075,57601447 -1 + chr20 57710920 57710964 chr20,57710920,57710964,-,L2b,LINE,L2,-1,3374,3330,57710919,57714293 -6 - chr20 57710930 57711105 chr20,57710930,57711105,-,MIR,SINE,MIR,-5,257,47,57710925,57711151 -6 - chr20 57711906 57711998 chr20,57711906,57711998,-,L2c,LINE,L2,0,3387,3286,57711906,57715283 -6 - chr20 57712331 57712452 chr20,57712331,57712452,+,MIR,SINE,MIR,78,199,-63,57712254,57712515 +6 + chr20 57712490 57712594 chr20,57712490,57712594,-,MIR,SINE,MIR,-64,198,108,57712426,57712701 -6 - chr20 57712683 57712780 chr20,57712683,57712817,-,MER53,DNA,hAT,-1,192,1,57712682,57712817 -5 - chr20 57958171 57958338 chr20,57957961,57958338,-,MER113,DNA,hAT-Charlie,-6,515,134,57957955,57958471 +4 - chr20 57958564 57958624 chr20,57958564,57958624,+,MER5A,DNA,hAT-Charlie,70,128,-61,57958495,57958685 -6 + chr20 57959468 57959573 chr20,57959468,57959573,+,MIR,SINE,MIR,110,218,-44,57959359,57959617 -6 + chr20 57959582 57959594 chr20,57959582,57959594,-,MIRb,SINE,MIR,0,268,261,57959582,57959854 +6 - chr20 57959594 57959660 chr20,57959594,57960006,+,MLT1C,LTR,ERVL-MaLR,1,467,0,57959594,57960006 -1 + chr20 58003904 58004067 chr20,58003746,58004178,+,MLT1K,LTR,ERVL-MaLR,146,569,-26,58003601,58004204 +1 + chr20 58004320 58004391 chr20,58004320,58004391,+,L2c,LINE,L2,3109,3176,-199,58001212,58004590 +6 + chr20 58004436 58004623 chr20,58004436,58004623,+,MIR,SINE,MIR,8,200,-62,58004429,58004685 +6 + chr20 58071721 58071912 chr20,58071685,58071912,+,L2a,LINE,L2,3176,3424,-2,58068510,58071914 -4 + chr20 58515419 58515459 chr20,58515419,58515459,+,(TCC)n,Simple_repeat,Simple_repeat,1,41,0,58515419,58515459 +6 + chr20 58519504 58519527 chr20,58519465,58519527,+,MIRc,SINE,MIR,104,169,-93,58519362,58519620 +2 + chr20 58519610 58519625 chr20,58519610,58519679,-,MIRb,SINE,MIR,-169,99,26,58519441,58519704 -4 - chr20 58522301 58522405 chr20,58522274,58522405,-,L1ME4a,LINE,L1,-2,6122,5986,58522272,58528390 -2 - chr20 58524903 58525000 chr20,58524903,58525000,+,MIRb,SINE,MIR,161,261,-7,58524743,58525007 +6 + chr20 58525835 58526032 chr20,58525835,58526055,+,MER113,DNA,hAT-Charlie,146,364,-157,58525690,58526212 +5 + chr20 58573576 58573595 chr20,58573415,58573595,+,MER58A,DNA,hAT-Charlie,45,224,0,58573371,58573595 +2 + chr20 58573726 58573839 chr20,58573726,58573839,+,MIRb,SINE,MIR,118,222,-46,58573609,58573885 +5 + chr20 58573865 58573970 chr20,58573865,58573981,-,MIRb,SINE,MIR,-40,228,115,58573825,58574095 -5 - chr20 58603609 58603699 chr20,58603609,58603699,+,MIRb,SINE,MIR,82,180,-88,58603528,58603787 +6 + chr20 58603819 58603973 chr20,58603819,58603981,-,L2a,LINE,L2,0,3426,3223,58603819,58607203 -5 - chr20 58619580 58619855 chr20,58619580,58619855,-,L2a,LINE,L2,-5,3421,3111,58619575,58622965 -6 - chr20 58635284 58635386 chr20,58635284,58635386,+,MER20,DNA,hAT-Charlie,3,105,-114,58635282,58635500 +6 + chr20 58635368 58635455 chr20,58635368,58635455,+,MER20,DNA,hAT-Charlie,122,219,0,58635247,58635455 +6 + chr20 58754635 58754754 chr20,58754557,58754754,-,MIR,SINE,MIR,-3,259,36,58754554,58754789 -2 - chr20 58817132 58817349 chr20,58817131,58817349,-,L2b,LINE,L2,-3,3372,3147,58817128,58820495 +5 - chr20 58836237 58836434 chr20,58836214,58836434,-,L3,LINE,CR1,-85,4014,3769,58836129,58840202 +4 - chr20 58840409 58840490 chr20,58840409,58840490,+,(GAGTAC)n,Simple_repeat,Simple_repeat,1,81,0,58840409,58840490 -6 + chr20 59357309 59357456 chr20,59357164,59357456,-,AluSz,SINE,Alu,-5,307,1,59357159,59357456 +4 - chr20 59357456 59357545 chr20,59357456,59357545,+,L2b,LINE,L2,3291,3373,-2,59354166,59357547 -6 + chr20 59360955 59361057 chr20,59360955,59361057,-,L1MC3,LINE,L1,-10,7775,7674,59360945,59368730 +6 - chr20 59361060 59361168 chr20,59361060,59361168,-,MIRb,SINE,MIR,-100,168,50,59360960,59361217 +6 - chr20 59515191 59515236 chr20,59514862,59515236,-,MER66D,LTR,ERV1,-4,480,27,59514858,59515262 -1 - chr20 59515927 59516039 chr20,59515927,59516267,-,L1MC5a,LINE,L1,-43,2734,2389,59515884,59518655 -5 - chr20 59626464 59626739 chr20,59626145,59626739,-,L2a,LINE,L2,-2,3424,2822,59626143,59629560 +5 - chr20 59626761 59626814 chr20,59626761,59626814,-,L2a,LINE,L2,-699,2720,2667,59626062,59629480 +6 - chr20 59628094 59628107 chr20,59628033,59628107,-,L3,LINE,CR1,-87,4012,3940,59627946,59632046 +4 - chr20 60083548 60083649 chr20,60083548,60083649,-,MIR,SINE,MIR,-113,149,48,60083435,60083696 +6 - chr20 60087905 60088000 chr20,60087905,60088033,-,MIR,SINE,MIR,-118,144,13,60087787,60088045 -1 - chr20 60088710 60088721 chr20,60088710,60088756,+,LTR33A,LTR,ERVL,471,517,-3,60088240,60088759 +4 + chr20 60138572 60138644 chr20,60138572,60139132,-,LTR43B,LTR,ERV1,0,572,1,60138572,60139132 -4 - chr20 60154407 60154506 chr20,60154085,60156518,-,L1ME2,LINE,L1,-1680,5261,2682,60152405,60159199 -3 - chr20 60246095 60246129 chr20,60246095,60246226,+,MER5A,DNA,hAT-Charlie,10,144,-45,60246086,60246271 +5 + chr20 60247555 60247667 chr20,60247360,60247667,-,AluYm1,SINE,Alu,-3,308,1,60247357,60247667 -2 - chr20 60249494 60249624 chr20,60249468,60249624,-,MIRb,SINE,MIR,-108,160,5,60249360,60249628 -2 - chr20 60249636 60249788 chr20,60249636,60249788,-,MER5A,DNA,hAT-Charlie,-29,160,5,60249607,60249792 -6 - chr20 60284477 60284613 chr20,60283713,60284816,+,HERV4_I-int,LTR,ERV1,5179,6264,-275,60278535,60285091 +5 + chr20 60320633 60321047 chr20,60320413,60321047,-,Arthur1,DNA,hAT-Tip100,-3211,736,1,60317202,60321047 -2 - chr20 60321483 60321576 chr20,60321483,60321576,+,L1MD2,LINE,L1,324,408,-6139,60321160,60327715 +6 + chr20 60321934 60321969 chr20,60321934,60321969,-,MER5A,DNA,hAT-Charlie,-9,180,156,60321925,60322124 -6 - chr20 60321969 60322256 chr20,60321969,60322274,+,AluSq2,SINE,Alu,1,301,-12,60321969,60322286 +5 + chr20 60761874 60761994 chr20,60761590,60762004,-,MLT1L,LTR,ERVL-MaLR,-1,609,109,60761589,60762112 -1 - chr20 60762287 60762342 chr20,60762236,60762342,-,L2b,LINE,L2,0,3375,3268,60762236,60765609 -2 - chr20 60764853 60764931 chr20,60764628,60764946,-,Arthur1C,DNA,hAT-Tip100,0,363,1,60764628,60764946 -3 - chr20 60767222 60767279 chr20,60766883,60767408,-,L1ME3Cz,LINE,L1,-189,808,241,60766694,60767648 -5 - chr20 60812065 60812145 chr20,60812065,60812145,+,L2b,LINE,L2,3289,3370,-5,60808777,60812150 -6 + chr20 60812364 60812465 chr20,60812364,60812465,+,MER113B,DNA,hAT-Charlie,201,302,0,60812164,60812465 -6 + chr20 60812468 60812677 chr20,60812468,60812677,-,L1ME4a,LINE,L1,-341,5783,5573,60812127,60818249 +6 - chr20 60812889 60812920 chr20,60812889,60812920,+,(TC)n,Simple_repeat,Simple_repeat,1,31,0,60812889,60812920 -6 + chr20 60813474 60813827 chr20,60813474,60813827,-,MER113,DNA,hAT-Charlie,-41,480,111,60813433,60813937 +6 - chr20 60813942 60813976 chr20,60813942,60813976,+,A-rich,Low_complexity,Low_complexity,1,34,0,60813942,60813976 -6 + chr20 60813979 60814211 chr20,60813979,60814239,+,L1M3,LINE,L1,3812,4073,-2067,60810168,60816306 -1 + chr20 61077318 61077468 chr20,61077318,61077468,-,MIRc,SINE,MIR,-98,170,1,61077220,61077468 +6 - chr20 61077468 61077587 chr20,61077468,61077587,-,MIRc,SINE,MIR,-129,139,2,61077339,61077588 +6 - chr20 61436499 61436605 chr20,61436267,61436931,-,MER21C,LTR,ERVL,-94,844,129,61436173,61437059 +5 - chr20 61717506 61717784 chr20,61717475,61717784,-,AluSz,SINE,Alu,0,312,4,61717475,61717787 +5 - chr20 61754992 61755056 chr20,61754915,61755267,-,THE1A,LTR,ERVL-MaLR,0,355,1,61754915,61755267 +1 - chr20 62305432 62305481 chr20,62305351,62305481,-,MER58A,DNA,hAT-Charlie,-51,173,30,62305300,62305510 +5 - chr20 62386305 62386438 chr20,62386305,62386438,-,L1M5,LINE,L1,-439,5685,5542,62385866,62391979 +6 - chr20 62403000 62403041 chr20,62403000,62403041,+,(CCCCAG)n,Simple_repeat,Simple_repeat,1,42,0,62403000,62403041 -6 + chr20 62403202 62403621 chr20,62403202,62403621,+,MLT1C,LTR,ERVL-MaLR,1,430,-37,62403202,62403658 -6 + chr20 62403914 62404191 chr20,62403914,62404191,+,AluJb,SINE,Alu,1,293,-19,62403914,62404210 -6 + chr20 62404217 62404423 chr20,62404217,62404423,-,MIRb,SINE,MIR,-36,232,16,62404181,62404438 +6 - chr20 62405028 62405062 chr20,62405028,62405062,+,(CTCCA)n,Simple_repeat,Simple_repeat,1,35,0,62405028,62405062 -6 + chr20 62427937 62427973 chr20,62427937,62428053,+,MIR1_Amn,SINE,MIR,61,181,-27,62427877,62428080 +4 + chr20 62429075 62429318 chr20,62429039,62429318,+,MLT1A0,LTR,ERVL-MaLR,1,283,-82,62429039,62429400 +1 + chr20 62429697 62429731 chr20,62429697,62429731,+,GA-rich,Low_complexity,Low_complexity,1,37,0,62429697,62429731 +6 + chr20 62430848 62431064 chr20,62430848,62431122,-,L1PB4,LINE,L1,-2,6154,5865,62430846,62436986 -4 - chr20 62431331 62431515 chr20,62431331,62431789,-,L1MB5,LINE,L1,-51,6133,5598,62431280,62437386 -5 - chr20 62447400 62447429 chr20,62447359,62447429,+,MER33,DNA,hAT-Charlie,214,289,-35,62447146,62447464 +2 + chr20 62515557 62515596 chr20,62515557,62515596,+,G-rich,Low_complexity,Low_complexity,1,42,0,62515557,62515596 -6 + chr20 62544343 62544447 chr20,62544165,62544447,-,AluSx1,SINE,Alu,-10,302,21,62544155,62544467 +5 - chr20 62544447 62544568 chr20,62544447,62544568,-,L1MB5,LINE,L1,-401,5773,5657,62544046,62550224 +5 - chr20 62544582 62544970 chr20,62544582,62544970,-,MSTB,LTR,ERVL-MaLR,0,426,20,62544582,62544989 +6 - chr20 62544988 62545065 chr20,62544988,62545065,-,L1MD,LINE,L1,-599,5643,5556,62544389,62550620 +6 - chr20 62545791 62545832 chr20,62545791,62545832,+,(ATTC)n,Simple_repeat,Simple_repeat,1,42,0,62545791,62545832 -6 + chr20 62545915 62546005 chr20,62545915,62546005,-,MIRb,SINE,MIR,-81,187,90,62545834,62546094 +6 - chr20 62548312 62548379 chr20,62548259,62548379,+,MIR,SINE,MIR,60,181,-81,62548200,62548460 -4 + chr20 62596989 62597066 chr20,62596989,62597066,-,MIR1_Amn,SINE,MIR,-80,150,75,62596909,62597140 +6 - chr20 62602978 62603115 chr20,62602934,62603232,-,L1MEf,LINE,L1,-5822,378,29,62597112,62603260 +1 - chr20 62633772 62633867 chr20,62633543,62633986,+,L1MA8,LINE,L1,5832,6290,-1,62627712,62633987 +1 + chr20 62633681 62633968 chr20,62633543,62633986,+,L1MA8,LINE,L1,5832,6290,-1,62627712,62633987 -1 + chr20 62640719 62640770 chr20,62640598,62640770,+,MER113,DNA,hAT-Charlie,231,412,-109,62640368,62640879 -5 + chr20 62640826 62640939 chr20,62640826,62640939,-,L3,LINE,CR1,-48,4051,3939,62640778,62644877 +6 - chr20 62641655 62641834 chr20,62641655,62641834,-,MIR,SINE,MIR,-26,236,43,62641629,62641876 +6 - chr20 62648976 62649466 chr20,62648976,62649466,-,MLT2B4,LTR,ERVL,0,556,1,62648976,62649466 +6 - chr20 62652002 62652080 chr20,62652002,62652080,+,(CCCACC)n,Simple_repeat,Simple_repeat,1,78,0,62652002,62652080 -6 + chr20 62695087 62695115 chr20,62695087,62695115,+,(CTGCAC)n,Simple_repeat,Simple_repeat,1,28,0,62695087,62695115 -6 + chr20 62732566 62732813 chr20,62732197,62732813,-,L1MC2,LINE,L1,-2014,4132,3544,62730183,62736356 +5 - chr20 63036563 63037028 chr20,63036563,63037395,-,L1M4,LINE,L1,-1581,4565,3760,63034982,63041154 +1 - chr20 63038014 63038185 chr20,63038014,63038380,-,L1MB4,LINE,L1,-302,5878,5493,63037712,63043872 -4 - chr20 63053187 63053266 chr20,63053187,63053318,+,LTR33,LTR,ERVL,39,182,-333,63053149,63053651 +4 + chr20 63053512 63053535 chr20,63053467,63053535,-,L2a,LINE,L2,-13,3413,3345,63053454,63056879 -2 - chr20 63079992 63080252 chr20,63079843,63080252,+,MLT1C,LTR,ERVL-MaLR,6,461,-6,63079838,63080258 +2 + chr20 63080323 63080502 chr20,63080323,63080502,-,L2,LINE,L2,-1511,1908,1716,63078812,63082217 -6 - chr20 63082607 63082908 chr20,63082607,63082908,+,LTR16E1,LTR,ERVL,216,520,-18,63082392,63082926 +6 + chr20 63095493 63095509 chr20,63095255,63095509,+,MLT1D,LTR,ERVL-MaLR,116,453,-52,63095140,63095561 -5 + chr20 63095509 63095619 chr20,63095509,63095619,-,L1MA3,LINE,L1,0,6305,6200,63095509,63101818 +6 - chr20 63095619 63095663 chr20,63095619,63095663,+,MLT1D,LTR,ERVL-MaLR,454,496,-9,63095166,63095672 -6 + chr20 63095762 63095792 chr20,63095762,63095792,+,(TTGC)n,Simple_repeat,Simple_repeat,1,30,0,63095762,63095792 -6 + chr20 63102713 63102768 chr20,63102713,63102768,+,G-rich,Low_complexity,Low_complexity,1,59,0,63102713,63102768 +6 + chr20 63104251 63104386 chr20,63104251,63104423,+,Cheshire,DNA,hAT-Charlie,34,233,-2187,63104218,63106610 +5 + chr20 63127716 63128291 chr20,63127716,63128291,-,L1MB3,LINE,L1,-1,6182,5620,63127715,63133910 +6 - chr20 63128300 63128487 chr20,63128300,63128487,-,L1ME3D,LINE,L1,-253,5989,5795,63128047,63134281 +6 - chr20 63128744 63128851 chr20,63128744,63128851,-,L1ME3D,LINE,L1,-797,5349,5233,63127947,63134083 +6 - chr20 63129300 63129459 chr20,63129300,63129601,-,L1ME3D,LINE,L1,-1453,4693,4377,63127847,63133977 +1 - chr20 63218132 63218502 chr20,63218132,63218547,-,MLT1C,LTR,ERVL-MaLR,0,467,1,63218132,63218547 -5 - chr20 63254481 63254600 chr20,63254481,63254600,+,(CCCCGC)n,Simple_repeat,Simple_repeat,1,120,0,63254481,63254600 +6 + chr20 63255750 63255897 chr20,63255750,63255897,+,L1MB7,LINE,L1,6039,6178,0,63249712,63255897 +6 + chr20 63258111 63258472 chr20,63258111,63258472,-,MLT1C,LTR,ERVL-MaLR,0,467,78,63258111,63258549 -6 - chr20 63258461 63258549 chr20,63258461,63258549,-,AluJr,SINE,Alu,-224,88,1,63258237,63258549 -6 - chr20 63258631 63258665 chr20,63258631,63258665,+,GA-rich,Low_complexity,Low_complexity,1,35,0,63258631,63258665 +6 + chr20 63366771 63366850 chr20,63366771,63366850,+,(GGTCGG)n,Simple_repeat,Simple_repeat,1,79,0,63366771,63366850 +6 + chr20 63367322 63367494 chr20,63367322,63367494,+,MIRb,SINE,MIR,16,204,-64,63367307,63367558 +6 + chr20 63368486 63368623 chr20,63368486,63368623,+,MIRc,SINE,MIR,28,167,-101,63368459,63368724 +6 + chr20 63449061 63449300 chr20,63448952,63449300,+,MLT1K,LTR,ERVL-MaLR,211,580,-15,63448742,63449315 +2 + chr20 63502324 63502376 chr20,63502324,63502376,+,(GCAG)n,Simple_repeat,Simple_repeat,1,57,0,63502324,63502376 +6 + chr20 63543700 63543738 chr20,63543700,63543743,+,L2a,LINE,L2,3384,3426,0,63540317,63543743 +5 + chr20 63628566 63628697 chr20,63628566,63628697,+,FLAM_C,SINE,Alu,1,137,-6,63628566,63628703 +6 + chr20 63730072 63730136 chr20,63730048,63730136,-,L1M5,LINE,L1,-471,5653,5553,63729577,63735688 +5 - chr20 63814887 63814902 chr20,63814682,63814902,+,Charlie4a,DNA,hAT-Charlie,186,420,-88,63814497,63814990 +2 + chr20 63814902 63815084 chr20,63814902,63815084,+,AluJb,SINE,Alu,118,299,-13,63814785,63815097 +6 + chr20 63843444 63843579 chr20,63843444,63843579,+,L2c,LINE,L2,2998,3140,-247,63840447,63843826 -6 + chr20 63861212 63861246 chr20,63861112,63861246,+,AluJo,SINE,Alu,1,132,-180,63861112,63861426 -5 + chr20 63863031 63863075 chr20,63863031,63863075,+,G-rich,Low_complexity,Low_complexity,1,45,0,63863031,63863075 -6 + chr20 63863323 63863457 chr20,63863323,63863457,-,L2b,LINE,L2,-174,3201,3061,63863149,63866517 +6 - chr20 63864154 63864284 chr20,63864154,63864284,+,MIR,SINE,MIR,9,146,-116,63864146,63864400 -6 + chr20 63953384 63953408 chr20,63953098,63953408,+,AluSp,SINE,Alu,2,312,-1,63953097,63953409 +1 + chr20 63953420 63953717 chr20,63953420,63953717,+,AluSq2,SINE,Alu,2,311,-2,63953419,63953719 +6 + chr20 63954968 63955266 chr20,63954968,63955266,+,AluSx,SINE,Alu,1,297,-15,63954968,63955281 +6 + chr20 63956880 63956908 chr20,63956880,63956908,+,(TA)n,Simple_repeat,Simple_repeat,1,29,0,63956880,63956908 +6 + chr20 64034704 64034762 chr20,64034704,64034762,-,MIR3,SINE,MIR,-39,169,110,64034665,64034871 -6 - chr20 64035124 64035319 chr20,64035124,64035319,-,Tigger3c,DNA,TcMar-Tigger,0,602,413,64035124,64035731 -6 - chr20 64039754 64039887 chr20,64039754,64039887,-,MIR,SINE,MIR,-62,200,46,64039692,64039932 -5 - chr20 64290490 64290526 chr20,64290490,64290526,+,(CAGCACC)n,Simple_repeat,Simple_repeat,1,37,0,64290490,64290526 +6 + chr20 64312728 64313004 chr20,64312690,64313004,-,AluSq2,SINE,Alu,0,313,1,64312690,64313004 -2 - chr20 64313035 64313089 chr20,64313035,64313089,+,MIR,SINE,MIR,100,155,-107,64312936,64313196 +6 + chr21 5087617 5087651 chr21,5087542,5087651,+,Ricksha_c,DNA,MULE-MuDR,1917,2023,-25,5085626,5087676 +2 + chr21 5243703 5243745 chr21,5243567,5243745,+,MIRb,SINE,MIR,16,209,-59,5243552,5243804 -4 + chr21 5243759 5243783 chr21,5243759,5243783,+,(CTTC)n,Simple_repeat,Simple_repeat,1,25,0,5243759,5243783 -6 + chr21 5499677 5499999 chr21,5499677,5499999,+,L1M3a,LINE,L1,2,331,-5624,5499676,5505623 -6 + chr21 5565963 5565982 chr21,5565340,5565982,+,LTR25,LTR,ERV1,285,844,0,5565056,5565982 +1 + chr21 5565986 5566183 chr21,5565986,5566266,-,L1MB3,LINE,L1,-225,5958,5662,5565761,5571927 -4 - chr21 5579672 5579723 chr21,5579672,5579723,-,MIR1_Amn,SINE,MIR,-97,133,82,5579575,5579804 -6 - chr21 5582228 5582238 chr21,5581953,5582238,-,AluJo,SINE,Alu,-5,307,10,5581948,5582247 -1 - chr21 5582305 5582442 chr21,5582305,5582442,-,MER67C,LTR,ERV1,-476,235,110,5581829,5582551 -6 - chr21 5582442 5582584 chr21,5582442,5582584,+,AluJr4,SINE,Alu,1,131,-181,5582442,5582765 +6 + chr21 5582584 5582876 chr21,5582584,5582876,+,AluSx3,SINE,Alu,1,285,-26,5582584,5582902 +6 + chr21 5582876 5582919 chr21,5582876,5582919,+,(AAAT)n,Simple_repeat,Simple_repeat,1,43,0,5582876,5582919 +6 + chr21 5582919 5583089 chr21,5582919,5583089,+,AluJr4,SINE,Alu,132,295,-17,5582788,5583106 +6 + chr21 5583089 5583191 chr21,5583089,5583191,-,MER67C,LTR,ERV1,-602,109,5,5582487,5583195 -6 - chr21 5583892 5584290 chr21,5583892,5584290,-,MER21C,LTR,ERVL,-14,924,507,5583878,5584796 -6 - chr21 5584293 5584805 chr21,5584293,5584805,+,MER92B,LTR,ERV1,33,562,-74,5584261,5584879 +6 + chr21 5585207 5585517 chr21,5585207,5585517,+,AluSp,SINE,Alu,2,312,-1,5585206,5585518 +6 + chr21 5588239 5588414 chr21,5588239,5588414,+,MER5B,DNA,hAT-Charlie,1,175,-3,5588239,5588417 +6 + chr21 5588576 5588622 chr21,5588576,5588622,+,(TGTGCTC)n,Simple_repeat,Simple_repeat,1,46,0,5588576,5588622 +6 + chr21 5589090 5589232 chr21,5589090,5589232,-,L1MC5,LINE,L1,-13,9291,9139,5589077,5598370 -6 - chr21 5589287 5589410 chr21,5589287,5589410,-,AluSx,SINE,Alu,-191,121,1,5589096,5589410 -6 - chr21 5591611 5592004 chr21,5591611,5592029,+,MER57F,LTR,ERV1,1,435,0,5591611,5592029 +5 + chr21 5614752 5614880 chr21,5614748,5617410,-,BSR/Beta,Satellite,Satellite,-3,2634,1,5614745,5617410 -5 - chr21 5703182 5703639 chr21,5702840,5703639,+,L1MB2,LINE,L1,5713,6661,-8,5697128,5703647 -5 + chr21 5704975 5705132 chr21,5704975,5705132,-,AluSx1,SINE,Alu,-15,297,135,5704960,5705266 +6 - chr21 5705410 5705453 chr21,5705410,5705707,+,AluJo,SINE,Alu,9,309,-3,5705402,5705710 +1 + chr21 5705410 5705637 chr21,5705410,5705707,+,AluJo,SINE,Alu,9,309,-3,5705402,5705710 -1 + chr21 5706963 5706990 chr21,5706688,5706990,-,AluSg4,SINE,Alu,-8,302,2,5706680,5706991 -2 - chr21 6034690 6034928 chr21,6034604,6034928,+,L1M4,LINE,L1,4739,5091,-1055,6029866,6035983 +1 + chr21 6062524 6062591 chr21,6062363,6062645,-,L1MEf,LINE,L1,-4184,2016,1740,6058179,6064384 -3 - chr21 6074776 6074875 chr21,6074772,6074875,-,L1MC2,LINE,L1,-8,6336,6230,6074764,6081104 -2 - chr21 6084364 6084449 chr21,6084322,6084449,+,MER5C,DNA,hAT-Charlie,121,249,-64,6084202,6084513 -5 + chr21 6084955 6085171 chr21,6084955,6085171,+,L1ME3E,LINE,L1,5863,6075,-167,6079093,6085338 -6 + chr21 6089204 6089307 chr21,6089204,6089307,-,MIRc,SINE,MIR,-25,243,130,6089179,6089436 +6 - chr21 6089311 6089397 chr21,6089311,6089397,-,MLT1I,LTR,ERVL-MaLR,-1,410,323,6089310,6089719 +6 - chr21 6228966 6229358 chr21,6228940,6229358,-,MER57F,LTR,ERV1,0,435,1,6228940,6229358 +5 - chr21 6232566 6232730 chr21,6232555,6232730,-,MER5B,DNA,hAT-Charlie,-3,175,1,6232552,6232730 +5 - chr21 6254791 6254849 chr21,6254707,6254987,+,L1MB2,LINE,L1,5662,5958,-213,6249046,6255200 -3 + chr21 6320877 6320974 chr21,6320877,6321295,-,L1M3a,LINE,L1,-5528,1037,612,6315349,6321906 -4 - chr21 6321164 6321295 chr21,6320877,6321295,-,L1M3a,LINE,L1,-5528,1037,612,6315349,6321906 -2 - chr21 6329548 6329607 chr21,6329409,6329695,-,L1MB1,LINE,L1,-333,6194,5882,6329076,6335576 -3 - chr21 6356790 6356965 chr21,6356790,6356965,+,MER5B,DNA,hAT-Charlie,1,175,-3,6356790,6356968 +6 + chr21 6359680 6359723 chr21,6359680,6359723,+,(ATTTC)n,Simple_repeat,Simple_repeat,1,45,0,6359680,6359723 +6 + chr21 6360153 6360415 chr21,6360153,6360573,+,MER57F,LTR,ERV1,1,435,0,6360153,6360573 +5 + chr21 6520351 6520437 chr21,6520351,6520437,+,MIRb,SINE,MIR,44,135,-133,6520308,6520570 -6 + chr21 6520629 6520670 chr21,6520629,6520741,+,MER46C,DNA,TcMar-Tigger,1,108,-230,6520629,6520971 -1 + chr21 6631166 6631283 chr21,6631166,6631283,+,AluSx,SINE,Alu,1,117,-195,6631166,6631478 -6 + chr21 6631344 6631487 chr21,6631344,6631487,+,L1MC5,LINE,L1,9139,9291,-13,6622206,6631500 -6 + chr21 6631577 6631692 chr21,6631577,6631692,+,L1ME3A,LINE,L1,6057,6170,-3,6625521,6631695 -6 + chr21 6632159 6632334 chr21,6632159,6632334,-,MER5B,DNA,hAT-Charlie,-3,175,1,6632156,6632334 +6 - chr21 6634373 6634485 chr21,6634373,6634485,+,MIR,SINE,MIR,29,139,-123,6634345,6634608 -6 + chr21 6635067 6635377 chr21,6635067,6635377,-,AluSp,SINE,Alu,-6,307,1,6635061,6635377 +6 - chr21 6635786 6636296 chr21,6635786,6636296,-,MER92B,LTR,ERV1,-80,556,33,6635706,6636328 +6 - chr21 6636317 6636690 chr21,6636317,6636690,+,MER21C,LTR,ERVL,519,916,-22,6635799,6636712 -6 + chr21 6637397 6637511 chr21,6637397,6637511,+,MER67C,LTR,ERV1,5,120,-591,6637393,6638102 -6 + chr21 6637511 6637667 chr21,6637511,6637667,-,AluJr4,SINE,Alu,-24,288,135,6637487,6637801 +6 - chr21 6637667 6637984 chr21,6637667,6637984,-,AluSx3,SINE,Alu,-1,310,1,6637666,6637984 +6 - chr21 6637984 6638122 chr21,6637984,6638122,-,AluJr4,SINE,Alu,-178,134,1,6637806,6638122 +6 - chr21 6638122 6638259 chr21,6638122,6638259,+,MER67C,LTR,ERV1,121,235,-476,6638002,6638735 -6 + chr21 6638326 6638337 chr21,6638326,6638611,+,AluJo,SINE,Alu,10,306,-6,6638317,6638617 -1 + chr21 6659519 6659716 chr21,6659430,6659716,+,L1MB1,LINE,L1,5882,6194,-333,6653549,6660049 -4 + chr21 6659720 6659740 chr21,6659720,6660333,-,LTR25,LTR,ERV1,0,844,286,6659720,6660618 +1 - chr21 6667830 6668248 chr21,6667830,6668248,+,L1M3a,LINE,L1,287,712,-5528,6667544,6673776 -6 + chr21 6724264 6724293 chr21,6724264,6724682,-,L1M3a,LINE,L1,-5528,539,114,6718736,6724795 -4 - chr21 6724393 6724682 chr21,6724264,6724682,-,L1M3a,LINE,L1,-5528,539,114,6718736,6724795 -2 - chr21 6789637 6789706 chr21,6789637,6790106,+,L1P4,LINE,L1,5027,5496,-670,6784611,6790776 +4 + chr21 6810857 6810899 chr21,6809378,6810899,-,L1MA7,LINE,L1,-510,5781,4226,6808868,6815124 -2 - chr21 6858558 6858575 chr21,6858558,6858575,+,(GGC)n,Simple_repeat,Simple_repeat,1,17,0,6858558,6858575 +6 + chr21 6904972 6905153 chr21,6904972,6905153,+,MER5A,DNA,hAT-Charlie,2,189,0,6904971,6905153 +6 + chr21 6906517 6906549 chr21,6906393,6906549,-,MamSINE1,SINE,tRNA-RTE,0,290,135,6906393,6906683 -2 - chr21 6986450 6986489 chr21,6986328,6986489,+,L1MB1,LINE,L1,4986,5146,-994,6981343,6987483 -5 + chr21 6986500 6986648 chr21,6986500,6986786,+,L1MB1,LINE,L1,5646,5958,-333,6980855,6987119 -2 + chr21 6994900 6995032 chr21,6994900,6995318,+,L1M3a,LINE,L1,612,1037,-5528,6994289,7000846 -2 + chr21 6995222 6995318 chr21,6994900,6995318,+,L1M3a,LINE,L1,612,1037,-5528,6994289,7000846 -4 + chr21 7024971 7025166 chr21,7024971,7025375,+,L1ME4a,LINE,L1,5716,6122,-2,7019256,7025377 +5 + chr21 7061347 7061405 chr21,7061208,7061488,-,L1MB3,LINE,L1,-225,5958,5662,7060983,7067149 -3 - chr21 7083465 7083640 chr21,7083465,7083640,+,MER5B,DNA,hAT-Charlie,1,175,-3,7083465,7083643 +5 + chr21 7086837 7087229 chr21,7086837,7087255,+,MER57F,LTR,ERV1,1,435,0,7086837,7087255 +5 + chr21 7135334 7135791 chr21,7134992,7135791,+,L1MB2,LINE,L1,5713,6661,-8,7129280,7135799 -5 + chr21 7137127 7137284 chr21,7137127,7137284,-,AluSx1,SINE,Alu,-15,297,135,7137112,7137418 +6 - chr21 7137562 7137789 chr21,7137562,7137859,+,AluJo,SINE,Alu,9,309,-3,7137554,7137862 -1 + chr21 7443125 7443183 chr21,7442986,7443266,-,L1MB3,LINE,L1,-225,5958,5662,7442761,7448927 -3 - chr21 7465243 7465418 chr21,7465243,7465418,+,MER5B,DNA,hAT-Charlie,1,175,-3,7465243,7465421 +5 + chr21 7465580 7465626 chr21,7465580,7465626,+,(TGTGCTC)n,Simple_repeat,Simple_repeat,1,46,0,7465580,7465626 +6 + chr21 7468615 7469007 chr21,7468615,7469033,+,MER57F,LTR,ERV1,1,435,0,7468615,7469033 +5 + chr21 7669397 7669789 chr21,7669371,7669789,-,MER57F,LTR,ERV1,0,435,1,7669371,7669789 +5 - chr21 7671990 7672107 chr21,7671990,7672107,+,AluSx,SINE,Alu,1,117,-195,7671990,7672302 -6 + chr21 7672183 7672310 chr21,7672183,7672310,+,L1MC5,LINE,L1,9153,9291,-13,7663031,7672323 -6 + chr21 7672400 7672513 chr21,7672400,7672513,+,L1ME3A,LINE,L1,6057,6168,-5,7666344,7672518 -6 + chr21 7672778 7672824 chr21,7672778,7672824,+,(CAGAGCA)n,Simple_repeat,Simple_repeat,1,46,0,7672778,7672824 -6 + chr21 7672986 7673161 chr21,7672986,7673161,-,MER5B,DNA,hAT-Charlie,-3,175,1,7672983,7673161 +5 - chr21 7675883 7676193 chr21,7675883,7676193,-,AluSp,SINE,Alu,-1,312,2,7675882,7676194 +6 - chr21 7676599 7677107 chr21,7676599,7677107,-,MER92B,LTR,ERV1,-78,558,33,7676521,7677139 +1 - chr21 7677128 7677504 chr21,7677128,7677504,+,MER21C,LTR,ERVL,519,916,-22,7676610,7677526 -6 + chr21 7678209 7678323 chr21,7678209,7678323,+,MER67C,LTR,ERV1,4,114,-597,7678206,7678920 -6 + chr21 7678323 7678481 chr21,7678323,7678481,-,AluJr4,SINE,Alu,-24,288,132,7678299,7678612 +6 - chr21 7678481 7678820 chr21,7678481,7678820,-,AluSx3,SINE,Alu,0,311,1,7678481,7678820 +6 - chr21 7678820 7678962 chr21,7678820,7678962,-,AluJr4,SINE,Alu,-181,131,1,7678639,7678962 +6 - chr21 7678962 7679099 chr21,7678962,7679099,+,MER67C,LTR,ERV1,115,235,-476,7678848,7679575 -6 + chr21 7679166 7679177 chr21,7679166,7679451,+,AluJo,SINE,Alu,10,307,-5,7679157,7679456 -1 + chr21 7681691 7681742 chr21,7681691,7681786,+,MIR3,SINE,MIR,86,192,-16,7681606,7681802 -1 + chr21 7788831 7788887 chr21,7788831,7788887,-,MIRc,SINE,MIR,-195,73,14,7788636,7788900 +6 - chr21 8101251 8101708 chr21,8100909,8101708,+,L1MB2,LINE,L1,5215,6163,-8,8095695,8101716 -5 + chr21 8103044 8103201 chr21,8103044,8103201,-,AluSx1,SINE,Alu,-15,297,135,8103029,8103335 +6 - chr21 8103479 8103706 chr21,8103479,8103776,+,AluJo,SINE,Alu,9,309,-3,8103471,8103779 -1 + chr21 8197743 8197850 chr21,8197743,8197850,-,AluJb,SINE,Alu,-54,258,157,8197689,8198006 -6 - chr21 8197851 8197918 chr21,8197851,8197918,+,AluJb,SINE,Alu,195,262,-50,8197657,8197968 +6 + chr21 8200738 8201016 chr21,8200704,8201016,-,AluSp,SINE,Alu,0,313,1,8200704,8201016 -2 - chr21 8222961 8223054 chr21,8222946,8223054,-,AluJb,SINE,Alu,-175,127,15,8222771,8223068 -2 - chr21 8223185 8223396 chr21,8223155,8223396,-,AluSp,SINE,Alu,-4,309,69,8223151,8223464 -2 - chr21 8223426 8223472 chr21,8223426,8223472,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,45,0,8223426,8223472 +6 + chr21 8223497 8223547 chr21,8223497,8223547,+,(TCC)n,Simple_repeat,Simple_repeat,1,50,0,8223497,8223547 +6 + chr21 8227180 8227414 chr21,8227119,8227414,-,AluSz,SINE,Alu,0,312,10,8227119,8227423 -2 - chr21 8227584 8227624 chr21,8227584,8227624,+,(TAAC)n,Simple_repeat,Simple_repeat,1,40,0,8227584,8227624 +6 + chr21 8383777 8384062 chr21,8383754,8384062,-,AluSp,SINE,Alu,-4,309,1,8383750,8384062 -1 - chr21 8405960 8406053 chr21,8405945,8406053,-,AluJb,SINE,Alu,-175,127,15,8405770,8406067 -2 - chr21 8406184 8406395 chr21,8406154,8406395,-,AluSp,SINE,Alu,-4,309,69,8406150,8406463 -2 - chr21 8406425 8406471 chr21,8406425,8406471,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,45,0,8406425,8406471 +6 + chr21 8406496 8406546 chr21,8406496,8406546,+,(TCC)n,Simple_repeat,Simple_repeat,1,50,0,8406496,8406546 +6 + chr21 8410179 8410413 chr21,8410118,8410413,-,AluSz,SINE,Alu,0,312,10,8410118,8410422 -2 - chr21 8410583 8410623 chr21,8410583,8410623,+,(TAAC)n,Simple_repeat,Simple_repeat,1,40,0,8410583,8410623 +6 + chr21 9331231 9331290 chr21,9331140,9331536,-,MER57-int,LTR,ERV1,-470,7067,6661,9330670,9338196 -3 - chr21 9343508 9343532 chr21,9343476,9343785,-,AluSp,SINE,Alu,-4,309,1,9343472,9343785 -3 - chr21 9354231 9354319 chr21,9354204,9354478,-,AluSq,SINE,Alu,-33,280,10,9354171,9354487 -5 - chr21 9368466 9368619 chr21,9368438,9368619,+,L1MC4,LINE,L1,6819,7003,-1039,9361620,9369658 +2 + chr21 9368661 9368775 chr21,9368661,9368896,+,L1MC4,LINE,L1,7137,7374,-668,9361525,9369564 +5 + chr21 9781984 9782065 chr21,9781984,9782065,-,MIR3,SINE,MIR,-107,161,77,9781877,9782141 +6 - chr21 9792555 9792565 chr21,9792070,9792565,-,Charlie30a,DNA,hAT-Charlie,-281,510,9,9791789,9792573 +4 - chr21 9807735 9807760 chr21,9807626,9807760,-,L2b,LINE,L2,-2,3373,3249,9807624,9811008 +4 - chr21 9812427 9812602 chr21,9812263,9813560,-,SST1,Satellite,centr,-1,1562,284,9812262,9813843 +1 - chr21 9813837 9814009 chr21,9813707,9814969,-,SST1,Satellite,centr,-27,1536,284,9813680,9815252 +1 - chr21 9914127 9914182 chr21,9914127,9914270,+,MER77,LTR,ERVL,4,155,-449,9914124,9914719 +4 + chr21 9914407 9914779 chr21,9914350,9914779,+,MER77,LTR,ERVL,161,598,-6,9914190,9914785 +5 + chr21 10123896 10123952 chr21,10121890,10126029,+,GSATII,Satellite,centr,1,4376,0,10121890,10126029 +1 + chr21 10328411 10328546 chr21,10328293,10328546,-,L1MCa,LINE,L1,-4703,1805,1496,10323590,10330041 +5 - chr21 10328549 10329038 chr21,10328549,10329040,-,L1MCa,LINE,L1,-5953,555,31,10322596,10329070 +5 - chr21 10338455 10338566 chr21,10338089,10338991,+,L1MA6,LINE,L1,5394,6291,-9,10332696,10339000 -3 + chr21 10340414 10340478 chr21,10340358,10340858,+,L1MA6,LINE,L1,5736,6269,-31,10334623,10340889 -3 + chr21 10605649 10605713 chr21,10605649,10605713,+,(TA)n,Simple_repeat,Simple_repeat,1,66,0,10605649,10605713 +6 + chr21 12999781 12999926 chr21,12999781,12999963,+,AluSx1,SINE,Alu,129,312,0,12999653,12999963 -2 + chr21 13546980 13547054 chr21,13546728,13547054,-,MER44A,DNA,TcMar-Tigger,-6,333,5,13546722,13547058 -2 - chr21 13556393 13556511 chr21,13555917,13556669,-,L1MB7,LINE,L1,-3770,2874,1999,13552147,13558667 -3 - chr21 13679300 13679341 chr21,13679211,13679341,-,L1MA7,LINE,L1,-1906,4240,4114,13677305,13683454 +5 - chr21 13770020 13770201 chr21,13770020,13770201,+,MER5A,DNA,hAT-Charlie,2,189,0,13770019,13770201 +6 + chr21 13771565 13771597 chr21,13771441,13771597,-,MamSINE1,SINE,tRNA-RTE,0,290,135,13771441,13771731 -2 - chr21 14088756 14088783 chr21,14088756,14088783,+,(AAGAA)n,Simple_repeat,Simple_repeat,1,27,0,14088756,14088783 +6 + chr21 14088783 14089046 chr21,14088783,14089063,-,L1M2,LINE,L1,-3233,4329,4045,14085550,14093107 -5 - chr21 14143539 14143590 chr21,14143539,14143590,+,(AATATA)n,Simple_repeat,Simple_repeat,1,54,0,14143539,14143590 +6 + chr21 14597925 14598015 chr21,14597623,14598015,-,MLT1J,LTR,ERVL-MaLR,-19,493,111,14597604,14598125 -2 - chr21 14746893 14746931 chr21,14746893,14746931,+,(ATAGAA)n,Simple_repeat,Simple_repeat,1,38,0,14746893,14746931 -6 + chr21 14747012 14747089 chr21,14747012,14747089,+,MIR,SINE,MIR,8,87,-175,14747005,14747264 -6 + chr21 14747089 14747467 chr21,14747089,14747467,-,MLT1B,LTR,ERVL-MaLR,0,390,1,14747089,14747467 +6 - chr21 14747467 14747625 chr21,14747467,14747625,+,MIR,SINE,MIR,88,249,-13,14747380,14747638 -6 + chr21 14748096 14748375 chr21,14748096,14748401,+,AluSq2,SINE,Alu,1,306,-7,14748096,14748408 -2 + chr21 14753324 14753462 chr21,14753142,14753541,+,L1M3c,LINE,L1,539,863,-5800,14752604,14759341 -1 + chr21 14753801 14753863 chr21,14753560,14753996,+,L1MB1,LINE,L1,1809,2251,-5235,14751752,14759231 -1 + chr21 14762838 14762993 chr21,14762749,14762993,+,L2b,LINE,L2,1411,1683,-1736,14761339,14764729 -4 + chr21 14763006 14763090 chr21,14763006,14763105,-,L2a,LINE,L2,-17,3409,3304,14762989,14766408 +1 - chr21 14819393 14819609 chr21,14819393,14819609,+,MIR,SINE,MIR,29,262,0,14819365,14819609 -6 + chr21 14819738 14819911 chr21,14819738,14819911,-,AluSx,SINE,Alu,-3,309,137,14819735,14820047 +6 - chr21 14820938 14820958 chr21,14820938,14820958,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,14820938,14820958 -6 + chr21 14837610 14837636 chr21,14837610,14837636,+,(AAC)n,Simple_repeat,Simple_repeat,1,26,0,14837610,14837636 -6 + chr21 14837763 14837823 chr21,14837763,14838094,-,L2a,LINE,L2,-1,3425,3060,14837762,14841153 +2 - chr21 14853144 14853168 chr21,14853144,14853168,+,MLT1D,LTR,ERVL-MaLR,1,21,-484,14853144,14853652 -6 + chr21 14853168 14853431 chr21,14853168,14853522,+,MSTB,LTR,ERVL-MaLR,1,426,0,14853168,14853522 -2 + chr21 14857542 14857708 chr21,14857422,14857853,-,MLT1H,LTR,ERVL-MaLR,0,549,37,14857422,14857889 +1 - chr21 14881887 14881975 chr21,14881808,14882178,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,14881808,14882178 +1 - chr21 14946556 14946844 chr21,14946556,14946844,+,AluSx,SINE,Alu,1,284,-28,14946556,14946872 +6 + chr21 14946844 14946879 chr21,14946844,14946879,+,(AAAT)n,Simple_repeat,Simple_repeat,1,35,0,14946844,14946879 +6 + chr21 14946889 14947096 chr21,14946889,14947183,+,L2b,LINE,L2,3075,3387,0,14943815,14947183 +5 + chr21 14974215 14974317 chr21,14974009,14974825,-,Looper,DNA,PiggyBac,0,1557,740,14974009,14975564 -3 - chr21 14992234 14992346 chr21,14992053,14992346,-,AluJr,SINE,Alu,-27,285,2,14992026,14992347 -2 - chr21 15050686 15050946 chr21,15050686,15050946,+,MER74B,LTR,ERVL,66,356,-266,15050621,15051212 +6 + chr21 15051009 15051235 chr21,15051009,15051235,+,MER74B,LTR,ERVL,219,548,-74,15050791,15051309 +6 + chr21 15051272 15051297 chr21,15051272,15051297,+,(TG)n,Simple_repeat,Simple_repeat,1,25,0,15051272,15051297 +6 + chr21 15052151 15052247 chr21,15052151,15052247,-,MIRc,SINE,MIR,-137,131,33,15052014,15052279 -6 - chr21 15067070 15067212 chr21,15066901,15067556,-,Tigger15a,DNA,TcMar-Tigger,-61,654,36,15066840,15067591 -1 - chr21 15067535 15067556 chr21,15066901,15067556,-,Tigger15a,DNA,TcMar-Tigger,-61,654,36,15066840,15067591 -1 - chr21 15346704 15346738 chr21,15346704,15347071,-,L2a,LINE,L2,-2,3424,3043,15346702,15350113 -5 - chr21 15390578 15390618 chr21,15390246,15390668,+,L1MEf,LINE,L1,4773,5227,-1092,15385474,15391760 -3 + chr21 15394473 15394506 chr21,15394314,15394527,+,L1MD,LINE,L1,2288,2515,-3631,15392027,15398158 -3 + chr21 15395000 15395129 chr21,15394804,15395650,+,L1MC4a,LINE,L1,4281,5146,-1000,15390524,15396650 -3 + chr21 15395463 15395497 chr21,15394804,15395650,+,L1MC4a,LINE,L1,4281,5146,-1000,15390524,15396650 -3 + chr21 15494714 15494806 chr21,15494714,15494806,+,CR1-16_AMi,LINE,CR1,380,471,-380,15494335,15495186 -6 + chr21 15495716 15495759 chr21,15495661,15495759,-,MIR3,SINE,MIR,-6,202,104,15495655,15495862 +4 - chr21 16296603 16296700 chr21,16296566,16296750,+,AluSp,SINE,Alu,120,305,-8,16296447,16296758 -3 + chr21 16417139 16417458 chr21,16417095,16417466,-,MLT1B,LTR,ERVL-MaLR,0,390,1,16417095,16417466 +5 - chr21 16521719 16521804 chr21,16521706,16521972,-,AluSx1,SINE,Alu,-45,267,2,16521661,16521973 -5 - chr21 16525919 16526026 chr21,16525709,16526026,-,L1MD1,LINE,L1,-2057,4480,4176,16523652,16530201 -1 - chr21 16526027 16527019 chr21,16526027,16527219,-,HSMAR1,DNA,TcMar-Mariner,-1,1286,73,16526026,16527291 -5 - chr21 16574891 16574952 chr21,16574891,16574952,+,(TG)n,Simple_repeat,Simple_repeat,1,61,0,16574891,16574952 -6 + chr21 16574956 16574999 chr21,16574956,16574999,+,(CA)n,Simple_repeat,Simple_repeat,1,43,0,16574956,16574999 -6 + chr21 16575250 16575272 chr21,16575250,16575533,+,AluSx1,SINE,Alu,1,284,-28,16575250,16575561 -2 + chr21 16582464 16582518 chr21,16582215,16582518,-,AluSx,SINE,Alu,-8,304,1,16582207,16582518 +4 - chr21 16607191 16607258 chr21,16607191,16607258,+,L2c,LINE,L2,3331,3387,0,16603861,16607258 +5 + chr21 16607388 16608046 chr21,16607388,16608046,+,L2a,LINE,L2,2681,3426,0,16604708,16608046 +6 + chr21 16608345 16608559 chr21,16608345,16608559,-,MER58A,DNA,hAT-Charlie,-13,211,1,16608332,16608559 -6 - chr21 16608844 16609009 chr21,16608844,16609009,-,MER63A,DNA,hAT-Blackjack,0,210,1,16608844,16609009 -6 - chr21 16609139 16609217 chr21,16609139,16609217,+,MIRb,SINE,MIR,189,268,0,16608951,16609217 +6 + chr21 16613450 16613481 chr21,16613414,16613717,-,AluSq2,SINE,Alu,-23,290,1,16613391,16613717 -5 - chr21 16627285 16627397 chr21,16627285,16627586,-,AluSg,SINE,Alu,-9,301,1,16627276,16627586 -5 - chr21 16630827 16630972 chr21,16630604,16631044,-,LTR89,LTR,ERVL?,-187,692,182,16630417,16631225 -1 - chr21 16631441 16631452 chr21,16631052,16631452,+,LTR7,LTR,ERV1,1,448,-2,16631052,16631454 +1 + chr21 16640263 16640515 chr21,16640263,16640515,+,L2c,LINE,L2,3121,3387,0,16637143,16640515 +6 + chr21 16643529 16643748 chr21,16643421,16643748,-,L1ME2,LINE,L1,-3,6334,6013,16643418,16649760 -1 - chr21 16643749 16644340 chr21,16643749,16644340,+,MLT1E3,LTR,ERVL-MaLR,1,617,-7,16643749,16644347 +6 + chr21 16644343 16644391 chr21,16644343,16644391,-,L1ME2,LINE,L1,-320,6017,5976,16644023,16650366 -6 - chr21 16644391 16644931 chr21,16644391,16644931,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,16644391,16644931 -6 - chr21 16644931 16645065 chr21,16644931,16647337,-,L1ME2,LINE,L1,-362,5975,3451,16644569,16650787 -5 - chr21 16754714 16754770 chr21,16754714,16755159,-,L2c,LINE,L2,0,3387,2977,16754714,16758135 +2 - chr21 16755680 16755798 chr21,16755524,16755803,+,AluSq2,SINE,Alu,1,281,-32,16755524,16755835 -3 + chr21 16815622 16815688 chr21,16815317,16815942,+,L2b,LINE,L2,2669,3373,-2,16812649,16815944 -1 + chr21 16862875 16862929 chr21,16862388,16862929,-,L1ME4b,LINE,L1,-198,694,128,16862190,16863056 +5 - chr21 17444083 17444200 chr21,17444046,17444281,-,AluJr,SINE,Alu,-1,311,95,17444045,17444375 -3 - chr21 17448865 17448914 chr21,17448862,17448914,+,GA-rich,Low_complexity,Low_complexity,1,53,0,17448862,17448914 +5 + chr21 17659276 17659669 chr21,17659207,17659874,-,LTR48,LTR,ERV1,-7,637,1,17659200,17659874 +5 - chr21 17705408 17707455 chr21,17704228,17707841,+,L1PBa1,LINE,L1,252,3961,-2901,17703977,17710742 +5 + chr21 17785548 17785612 chr21,17785466,17785859,-,MSTD,LTR,ERVL-MaLR,0,396,1,17785466,17785859 +3 - chr21 17808945 17808976 chr21,17808816,17809181,+,MSTA,LTR,ERVL-MaLR,1,421,-7,17808816,17809188 +1 + chr21 17835016 17835132 chr21,17834987,17835132,-,LTR23,LTR,ERV1,-1,436,291,17834986,17835422 +5 - chr21 17835127 17835208 chr21,17835127,17835208,-,LTR23,LTR,ERV1,-352,85,4,17834775,17835211 +6 - chr21 17835795 17835826 chr21,17835795,17836418,-,ERV24_Prim-int,LTR,ERV1,-1992,6278,5171,17833803,17841588 +2 - chr21 17840633 17840653 chr21,17840633,17841112,-,LTR23,LTR,ERV1,0,437,1,17840633,17841112 +2 - chr21 18022370 18022442 chr21,18022081,18022538,-,MLT1D,LTR,ERVL-MaLR,0,505,1,18022081,18022538 +5 - chr21 18034520 18034629 chr21,18034355,18034914,-,LTR105_Mam,LTR,ERVL,0,600,41,18034355,18034954 +3 - chr21 18099967 18100018 chr21,18099967,18100176,+,HAL1ME,LINE,L1,1948,2148,-359,18098020,18100535 -2 + chr21 18114863 18114904 chr21,18114863,18115083,+,MLT1G1,LTR,ERVL-MaLR,338,574,-5,18114526,18115088 -1 + chr21 18477358 18477429 chr21,18477295,18477429,+,L3,LINE,CR1,3092,3223,-876,18474204,18478305 -5 + chr21 18477481 18477547 chr21,18477481,18477547,-,MLT1K,LTR,ERVL-MaLR,-8,602,527,18477473,18478073 +6 - chr21 18486492 18486560 chr21,18486349,18486560,-,MIRb,SINE,MIR,-4,264,24,18486345,18486583 +4 - chr21 18561265 18561303 chr21,18561225,18561303,-,LTR50,LTR,ERVL,-2,793,711,18561223,18562013 +5 - chr21 18561340 18561597 chr21,18561340,18561597,-,LTR5_Hs,LTR,ERVK,-711,257,1,18560629,18561597 +6 - chr21 18561597 18561691 chr21,18561597,18561692,-,SVA_F,Retroposon,SVA,-191,1184,846,18561406,18562537 +5 - chr21 18589527 18589620 chr21,18589522,18590761,+,L2,LINE,L2,443,1715,-1704,18589080,18592465 -3 + chr21 18612115 18612293 chr21,18612115,18612362,-,MSTD,LTR,ERVL-MaLR,0,396,146,18612115,18612507 +2 - chr21 18649806 18650028 chr21,18649806,18650028,+,MER58B,DNA,hAT-Charlie,116,340,-1,18649691,18650029 +6 + chr21 18752748 18753116 chr21,18752743,18753521,-,LTR17,LTR,ERV1,-2,778,1,18752741,18753521 +1 - chr21 18759779 18760003 chr21,18759779,18760548,-,LTR17,LTR,ERV1,-7,773,1,18759772,18760548 +1 - chr21 18917934 18918003 chr21,18917555,18918003,-,LTR42,LTR,ERVL,-24,471,2,18917531,18918004 +5 - chr21 18918174 18918217 chr21,18918174,18918333,+,MIR,SINE,MIR,88,236,-26,18918087,18918359 -2 + chr21 18935819 18935855 chr21,18935819,18935855,+,(T)n,Simple_repeat,Simple_repeat,1,36,0,18935819,18935855 -6 + chr21 19046866 19047025 chr21,19046866,19047069,+,L2b,LINE,L2,3190,3387,0,19043677,19047069 -2 + chr21 19047611 19047684 chr21,19047529,19047897,-,THE1D,LTR,ERVL-MaLR,-2,379,1,19047527,19047897 +1 - chr21 19130523 19130640 chr21,19130118,19130640,+,LTR27D,LTR,ERV1,1,615,0,19130118,19130640 +1 + chr21 19134124 19134423 chr21,19133831,19134485,+,MLT1E1A,LTR,ERVL-MaLR,7,680,0,19133825,19134485 +5 + chr21 19303654 19303739 chr21,19303654,19303758,-,L2b,LINE,L2,0,3375,3270,19303654,19307027 -5 - chr21 20256752 20257082 chr21,20256115,20257082,+,L1M5,LINE,L1,3179,4270,-1876,20252937,20258958 -5 + chr21 20257325 20257346 chr21,20257325,20257687,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,20257325,20257687 +2 - chr21 20258552 20258820 chr21,20258185,20258931,-,MER54B,LTR,ERVL,0,793,1,20258185,20258931 +1 - chr21 20778418 20778547 chr21,20778070,20780041,-,MER61-int,LTR,ERV1,-2182,3728,1972,20775888,20782012 +3 - chr21 20778643 20778796 chr21,20778070,20780041,-,MER61-int,LTR,ERV1,-2182,3728,1972,20775888,20782012 +3 - chr21 20781349 20781474 chr21,20781282,20781840,-,MER61-int,LTR,ERV1,-2066,3151,2594,20779216,20784433 +3 - chr21 20781570 20781661 chr21,20781282,20781840,-,MER61-int,LTR,ERV1,-2066,3151,2594,20779216,20784433 +3 - chr21 20782250 20782446 chr21,20782000,20782517,+,LTR10F,LTR,ERV1,1,511,0,20782000,20782517 -3 + chr21 21615096 21615262 chr21,21615096,21615262,+,MLT1F1,LTR,ERVL-MaLR,323,569,0,21614774,21615262 +6 + chr21 21615334 21615437 chr21,21615334,21615518,+,Tigger7,DNA,TcMar-Tigger,3,183,-2308,21615332,21617826 +5 + chr21 21655038 21655107 chr21,21654984,21655357,-,MSTD,LTR,ERVL-MaLR,0,396,1,21654984,21655357 +5 - chr21 21659020 21659109 chr21,21658938,21659385,-,MLT2A2,LTR,ERVL,0,453,1,21658938,21659385 +3 - chr21 21686249 21686329 chr21,21686164,21686525,-,THE1B,LTR,ERVL-MaLR,0,364,1,21686164,21686525 +1 - chr21 21723293 21723744 chr21,21723286,21723744,-,LTR80B,LTR,ERVL,-29,555,3,21723257,21723746 +5 - chr21 21727063 21727093 chr21,21727063,21727095,+,tRNA-Gly-GGY,tRNA,tRNA,1,32,-42,21727063,21727137 -2 + chr21 21737252 21737319 chr21,21737168,21737525,-,THE1B,LTR,ERVL-MaLR,0,364,3,21737168,21737527 +1 - chr21 21746973 21747043 chr21,21746768,21747069,+,THE1A,LTR,ERVL-MaLR,3,305,-50,21746766,21747119 +1 + chr21 21748395 21748507 chr21,21748202,21748507,-,AluY,SINE,Alu,-8,303,1,21748194,21748507 -2 - chr21 21785040 21785053 chr21,21785040,21785188,+,MIR1_Amn,SINE,MIR,33,202,-66,21785008,21785254 +4 + chr21 21797179 21797415 chr21,21796951,21797465,+,MLT1C,LTR,ERVL-MaLR,6,467,0,21796946,21797465 +5 + chr21 21933315 21933599 chr21,21933270,21933691,+,MSTA,LTR,ERVL-MaLR,1,428,0,21933270,21933691 -5 + chr21 21975560 21975681 chr21,21975303,21975688,-,MSTA,LTR,ERVL-MaLR,0,428,1,21975303,21975688 +1 - chr21 22016300 22016410 chr21,22015819,22017811,-,HERVL-int,LTR,ERVL,-3653,2001,1,22012166,22017811 +3 - chr21 22017888 22018156 chr21,22017813,22018238,-,MLT2A1,LTR,ERVL,-2,442,1,22017811,22018238 +1 - chr21 22041174 22041431 chr21,22039560,22041431,-,L1PA13,LINE,L1,-4872,3288,1385,22034688,22042815 +5 - chr21 22043046 22043108 chr21,22043046,22043409,-,LTR16,LTR,ERVL,-39,399,4,22043007,22043412 +2 - chr21 22054310 22054369 chr21,22053954,22054526,-,MLT1A0-int,LTR,ERVL-MaLR,-1162,573,1,22052792,22054526 +1 - chr21 22098313 22098342 chr21,22098144,22098342,+,Charlie4a,DNA,hAT-Charlie,44,238,-270,22098101,22098612 -4 + chr21 22098617 22098712 chr21,22098342,22098813,+,MER70A,LTR,ERVL,1,472,0,22098342,22098813 +1 + chr21 22098342 22098459 chr21,22098342,22098813,+,MER70A,LTR,ERVL,1,472,0,22098342,22098813 -1 + chr21 22109456 22109553 chr21,22109456,22109770,+,AluJr,SINE,Alu,1,312,0,22109456,22109770 +4 + chr21 22116336 22116528 chr21,22116299,22117015,+,MER6,DNA,TcMar-Tigger,134,865,0,22116166,22117015 +5 + chr21 22209939 22210118 chr21,22209807,22210118,-,AluY,SINE,Alu,-1,310,1,22209806,22210118 -1 - chr21 22210124 22210244 chr21,22210124,22210398,-,AluSz,SINE,Alu,-19,293,2,22210105,22210399 -4 - chr21 22420770 22420794 chr21,22420740,22420794,-,L1PA8,LINE,L1,-5,6163,6115,22420735,22426908 -2 - chr21 22501242 22501310 chr21,22501242,22501547,+,LTR83,LTR,ERVL,450,775,-5,22500793,22501552 -2 + chr21 22519868 22519919 chr21,22519726,22519919,-,AluSx3,SINE,Alu,-106,205,16,22519620,22519934 +4 - chr21 22519921 22520058 chr21,22519921,22521098,+,MER61-int,LTR,ERV1,4000,5217,0,22515922,22521098 -1 + chr21 23067919 23068036 chr21,23067893,23068040,-,AluJb,SINE,Alu,-30,282,134,23067863,23068173 -3 - chr21 23108820 23109002 chr21,23107939,23109422,+,LOR1-int,LTR,ERV1,2947,4423,-3697,23104993,23113119 +3 + chr21 23128641 23128738 chr21,23128636,23128894,-,AluSz6,SINE,Alu,-53,259,2,23128583,23128895 -3 - chr21 23131193 23131206 chr21,23131193,23131277,-,MIRc,SINE,MIR,-123,145,61,23131070,23131337 -5 - chr21 23361104 23361425 chr21,23361049,23361425,-,THE1C,LTR,ERVL-MaLR,0,375,1,23361049,23361425 +5 - chr21 23364038 23364193 chr21,23363934,23364261,+,MLT1H,LTR,ERVL-MaLR,1,338,-211,23363934,23364472 -3 + chr21 23372327 23372412 chr21,23372255,23372412,-,Charlie6,DNA,hAT-Charlie,-2015,1485,1324,23370240,23373735 +4 - chr21 23372948 23373084 chr21,23372531,23373371,-,Charlie6,DNA,hAT-Charlie,-2577,923,34,23369954,23373404 +3 - chr21 23384688 23384861 chr21,23384605,23385150,-,MLT2B3,LTR,ERVL,0,554,9,23384605,23385158 +1 - chr21 23477641 23477771 chr21,23477416,23477798,+,MLT2A1,LTR,ERVL,1,388,-56,23477416,23477854 +1 + chr21 23490454 23490626 chr21,23490454,23490626,+,MSTA,LTR,ERVL-MaLR,1,200,-228,23490454,23490854 +6 + chr21 23490626 23490724 chr21,23490626,23490904,+,AluY,SINE,Alu,28,305,-6,23490599,23490910 +5 + chr21 23888870 23889125 chr21,23888870,23889199,+,MLT1A0,LTR,ERVL-MaLR,16,365,0,23888855,23889199 -2 + chr21 23960905 23961038 chr21,23960538,23961038,-,MER89,LTR,ERV1,0,559,2,23960538,23961039 +5 - chr21 23961038 23961222 chr21,23961038,23961222,-,LTR78,LTR,ERV1,-340,964,771,23960698,23961992 +6 - chr21 23961236 23961285 chr21,23961236,23961285,+,MER5A,DNA,hAT-Charlie,11,58,-131,23961226,23961416 -6 + chr21 23967180 23967273 chr21,23963717,23969659,-,HERVL18-int,LTR,ERVL,0,6047,82,23963717,23969740 +1 - chr21 24043490 24043541 chr21,24043470,24043541,-,AluSz6,SINE,Alu,-14,298,229,24043456,24043769 -2 - chr21 24049520 24049755 chr21,24049437,24049755,-,MLT1J1,LTR,ERVL-MaLR,-100,348,25,24049337,24049779 -2 - chr21 24049818 24050039 chr21,24049818,24050039,-,AluSz6,SINE,Alu,-26,286,66,24049792,24050104 -6 - chr21 24050040 24050075 chr21,24050040,24050075,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,35,0,24050040,24050075 +6 + chr21 24050085 24050239 chr21,24050085,24050239,-,MLT1B,LTR,ERVL-MaLR,-244,146,9,24049841,24050247 -6 - chr21 24155198 24155370 chr21,24155198,24155370,+,L1MD,LINE,L1,4808,4984,-1162,24150391,24156532 -6 + chr21 24155404 24155471 chr21,24155404,24155471,+,(TC)n,Simple_repeat,Simple_repeat,1,68,0,24155404,24155471 -6 + chr21 24155557 24155714 chr21,24155557,24155714,+,LTR16,LTR,ERVL,271,435,-3,24155287,24155717 -6 + chr21 24187271 24187360 chr21,24187079,24187611,-,MLT1G3,LTR,ERVL-MaLR,-12,567,6,24187067,24187616 +3 - chr21 24188300 24188342 chr21,24188212,24188812,+,LTR48B,LTR,ERV1,1,622,-22,24188212,24188834 -1 + chr21 24304550 24304865 chr21,24304499,24304865,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,24304499,24304865 +5 - chr21 24305687 24305786 chr21,24305687,24305786,-,MLT1A0,LTR,ERVL-MaLR,0,365,267,24305687,24306052 +6 - chr21 24307737 24307759 chr21,24307737,24308170,-,MSTB1,LTR,ERVL-MaLR,0,432,1,24307737,24308170 +2 - chr21 24308216 24308333 chr21,24308171,24309754,-,MSTB1-int,LTR,ERVL-MaLR,0,1651,1,24308171,24309754 +3 - chr21 24438253 24438400 chr21,24438072,24438400,+,LTR16B1,LTR,ERVL,141,480,0,24437932,24438400 +2 + chr21 24441169 24441244 chr21,24441018,24441244,+,ERV3-16A3_I-int,LTR,ERVL,3875,4119,-1107,24437144,24442351 +2 + chr21 24441279 24441353 chr21,24441279,24441428,+,LTR33B,LTR,ERVL,37,200,-303,24441243,24441731 +5 + chr21 24485623 24485685 chr21,24485099,24485729,-,Tigger17a,DNA,TcMar-Tigger,-1,653,4,24485098,24485732 -3 - chr21 24488113 24488354 chr21,24488076,24488354,-,MLT1J,LTR,ERVL-MaLR,-220,292,3,24487856,24488356 -2 - chr21 24488369 24490009 chr21,24488369,24490009,+,L1PA7,LINE,L1,4515,6148,-6,24483855,24490015 +6 + chr21 24547158 24547621 chr21,24547158,24547621,+,ERVL-E-int,LTR,ERVL,1947,2422,-3245,24545212,24550866 +6 + chr21 24840550 24840646 chr21,24839625,24840646,-,LTR12D,LTR,ERV1,0,1254,1,24839625,24840646 -1 - chr21 24840646 24840728 chr21,24840646,24840800,+,L1MEg,LINE,L1,1377,1519,-4706,24839270,24845506 +4 + chr21 24844779 24844929 chr21,24844663,24845057,+,MER47B,DNA,TcMar-Tigger,1,417,-1,24844663,24845058 +3 + chr21 24938431 24938452 chr21,24938244,24938452,+,L2a,LINE,L2,3200,3426,0,24935045,24938452 -5 + chr21 24943923 24943980 chr21,24943744,24944268,-,MER1A,DNA,hAT-Charlie,0,529,1,24943744,24944268 +1 - chr21 24992703 24992817 chr21,24991754,24993070,+,HUERS-P3-int,LTR,ERV1,5621,6934,-1985,24986134,24995055 -1 + chr21 25029784 25029859 chr21,25029645,25029964,-,MLT1E2,LTR,ERVL-MaLR,0,680,347,25029645,25030310 -3 - chr21 25055913 25055949 chr21,25055913,25055949,+,(TTTATG)n,Simple_repeat,Simple_repeat,1,38,0,25055913,25055949 +6 + chr21 25056264 25056457 chr21,25056264,25056457,-,MIRb,SINE,MIR,-15,253,50,25056249,25056506 -6 - chr21 25056502 25056816 chr21,25056502,25056816,-,AluSx,SINE,Alu,-15,297,1,25056487,25056816 -6 - chr21 25057093 25057119 chr21,25057093,25057119,+,(TTTG)n,Simple_repeat,Simple_repeat,1,27,0,25057093,25057119 +6 + chr21 25057119 25057133 chr21,25057119,25057133,+,(GCTTTTT)n,Simple_repeat,Simple_repeat,5,44,0,25057115,25057133 +6 + chr21 25068727 25068772 chr21,25068564,25068772,-,L1ME2,LINE,L1,-278,6166,5955,25068286,25074726 -2 - chr21 25068785 25068878 chr21,25068785,25068968,-,L1ME2,LINE,L1,-266,5898,5715,25068519,25074682 -4 - chr21 25069716 25069906 chr21,25069544,25069938,+,MLT1B,LTR,ERVL-MaLR,1,376,-14,25069544,25069952 +5 + chr21 25095022 25095153 chr21,25093957,25095416,+,L1MEf,LINE,L1,421,1944,-4256,25093537,25099672 +1 + chr21 25101132 25101320 chr21,25101131,25101370,+,7SK,RNA,RNA,1,238,-93,25101131,25101463 +3 + chr21 25103382 25103670 chr21,25103382,25103716,+,MLT1A0,LTR,ERVL-MaLR,10,365,0,25103373,25103716 +5 + chr21 25169559 25169749 chr21,25169559,25169884,-,MLT1H,LTR,ERVL-MaLR,-209,340,3,25169350,25169886 +2 - chr21 25170757 25170781 chr21,25170612,25170781,-,MER115,DNA,hAT-Tip100,-3,690,522,25170609,25171302 +4 - chr21 25333737 25333825 chr21,25333706,25333833,+,MIR,SINE,MIR,2,141,-121,25333705,25333954 -1 + chr21 25386132 25386198 chr21,25386132,25386198,+,MLT1J1,LTR,ERVL-MaLR,70,133,-311,25386063,25386509 -6 + chr21 25420708 25420800 chr21,25420661,25420863,-,LTR89,LTR,ERVL?,-402,477,269,25420259,25421131 +3 - chr21 25429766 25430009 chr21,25429432,25430225,+,L2c,LINE,L2,2174,3033,-386,25427259,25430611 -1 + chr21 25431178 25431270 chr21,25431023,25431270,-,LTR89,LTR,ERVL?,-249,630,363,25430774,25431632 +4 - chr21 25515725 25516361 chr21,25515725,25516361,-,MLT1E2,LTR,ERVL-MaLR,0,627,1,25515725,25516361 +6 - chr21 25518301 25518338 chr21,25518301,25523254,+,L1M1,LINE,L1,18,5054,-2508,25518284,25525762 -1 + chr21 25573947 25573993 chr21,25573947,25573993,+,(CTGAATG)n,Simple_repeat,Simple_repeat,1,50,0,25573947,25573993 +6 + chr21 25574716 25574912 chr21,25574716,25574912,+,MIRb,SINE,MIR,38,251,-17,25574679,25574929 +6 + chr21 25582770 25582863 chr21,25582093,25582863,+,L1ME3Cz,LINE,L1,51,928,-69,25582043,25582932 -5 + chr21 25582863 25583326 chr21,25582863,25583337,-,MLT1N2,LTR,ERVL-MaLR,0,562,4,25582863,25583340 +1 - chr21 25928754 25928997 chr21,25928753,25929019,-,AluSc,SINE,Alu,-14,295,1,25928739,25929019 -1 - chr21 25933925 25934358 chr21,25933925,25934358,+,MLT1C,LTR,ERVL-MaLR,3,467,0,25933923,25934358 +1 + chr21 25934440 25934733 chr21,25934440,25934733,-,AluSg7,SINE,Alu,-17,292,1,25934423,25934733 -6 - chr21 25937790 25937912 chr21,25937765,25938073,-,AluJo,SINE,Alu,-9,303,1,25937756,25938073 -3 - chr21 25941308 25941330 chr21,25941274,25941330,+,MIRc,SINE,MIR,143,203,-65,25941132,25941395 +2 + chr21 25941475 25941773 chr21,25941475,25941773,-,AluSg,SINE,Alu,-11,299,1,25941464,25941773 -5 - chr21 25942282 25942431 chr21,25942282,25942431,+,MIRc,SINE,MIR,15,179,-29,25942268,25942460 +6 + chr21 26170895 26170984 chr21,26170895,26170984,+,(GGCCCAC)n,Simple_repeat,Simple_repeat,1,92,0,26170895,26170984 +1 + chr21 26214745 26214861 chr21,26214710,26215039,-,AluSx,SINE,Alu,-3,309,1,26214707,26215039 -3 - chr21 26215702 26215840 chr21,26215675,26215840,-,AluJo,SINE,Alu,-5,307,147,26215670,26215986 -2 - chr21 26215883 26216017 chr21,26215883,26216017,-,L1MC5a,LINE,L1,-237,2540,2404,26215646,26218420 -5 - chr21 26216017 26216504 chr21,26216017,26216504,+,PrimLTR79,LTR,ERV1,1,503,0,26216017,26216504 +6 + chr21 26216504 26216634 chr21,26216504,26216634,-,L1MC5a,LINE,L1,-374,2403,2341,26216130,26218974 -6 - chr21 26216952 26217070 chr21,26216952,26217070,+,MIRb,SINE,MIR,49,162,-106,26216904,26217176 +6 + chr21 26217070 26217381 chr21,26217070,26217436,+,THE1B,LTR,ERVL-MaLR,1,364,0,26217070,26217436 +5 + chr21 26350270 26350634 chr21,26350270,26350635,+,THE1B,LTR,ERVL-MaLR,1,364,0,26350270,26350635 -1 + chr21 26382525 26382596 chr21,26382302,26382672,+,THE1C,LTR,ERVL-MaLR,1,375,0,26382302,26382672 +3 + chr21 26387001 26387058 chr21,26386969,26387450,-,LTR27D,LTR,ERV1,-133,482,15,26386836,26387464 -3 - chr21 26405943 26406023 chr21,26405595,26406023,+,LTR16,LTR,ERVL,1,438,0,26405595,26406023 +1 + chr21 26417943 26418044 chr21,26417938,26418044,+,L1MB2,LINE,L1,10,124,-7441,26417929,26425485 +2 + chr21 26459967 26460037 chr21,26459967,26460037,-,LTR33,LTR,ERVL,0,515,444,26459967,26460480 +6 - chr21 26470560 26470646 chr21,26470356,26470728,+,MSTA,LTR,ERVL-MaLR,1,428,0,26470356,26470728 +3 + chr21 26518522 26518593 chr21,26518259,26518643,+,MSTD,LTR,ERVL-MaLR,1,396,0,26518259,26518643 +5 + chr21 26550319 26552127 chr21,26549928,26552293,+,Tigger1,DNA,TcMar-Tigger,1,2413,-5,26549928,26552298 +3 + chr21 26568309 26569252 chr21,26568309,26569604,+,L1PA16,LINE,L1,4838,6157,-9,26563472,26569613 +5 + chr21 27360461 27360544 chr21,27360461,27360544,-,LTR16D,LTR,ERVL,-332,319,242,27360129,27360785 +6 - chr21 27360934 27361084 chr21,27360934,27361084,-,MLT1J2,LTR,ERVL-MaLR,0,448,287,27360934,27361370 +6 - chr21 27362713 27362813 chr21,27362666,27362953,+,MLT1G3,LTR,ERVL-MaLR,287,595,0,27362380,27362953 +3 + chr21 27387467 27387545 chr21,27387450,27387545,+,L1MEf,LINE,L1,624,723,-5477,27386827,27393022 +2 + chr21 27391390 27391551 chr21,27391211,27391665,+,MLT1H,LTR,ERVL-MaLR,13,529,-20,27391199,27391685 +3 + chr21 27395746 27395787 chr21,27395746,27395855,+,L2c,LINE,L2,3270,3378,-9,27392477,27395864 +5 + chr21 27398480 27398565 chr21,27398392,27398568,-,MIRb,SINE,MIR,-88,180,1,27398304,27398568 +3 - chr21 27638872 27638915 chr21,27638872,27638915,+,(AGAACA)n,Simple_repeat,Simple_repeat,1,43,0,27638872,27638915 +6 + chr21 27653356 27653491 chr21,27653347,27653695,-,LTR16E1,LTR,ERVL,-15,523,145,27653332,27653839 -5 - chr21 27722379 27722413 chr21,27722362,27722750,-,MER50-int,LTR,ERV1,-10,7195,6840,27722352,27729589 -1 - chr21 27724799 27724881 chr21,27724348,27725041,-,MER50-int,LTR,ERV1,-3732,3473,2788,27720616,27727828 -1 - chr21 27751072 27751104 chr21,27750196,27751104,-,L1PA12,LINE,L1,-1,6167,5235,27750195,27756338 -2 - chr21 27751093 27751233 chr21,27751093,27751242,+,L1P3,LINE,L1,4788,4939,-1207,27746306,27752449 +5 + chr21 27954922 27955012 chr21,27954704,27955012,+,LFSINE_Vert,SINE,tRNA,4,332,-127,27954701,27955139 +1 + chr21 27977909 27978122 chr21,27977885,27978127,-,AluSx1,SINE,Alu,-10,302,60,27977875,27978186 -3 - chr21 28023001 28023131 chr21,28023001,28023131,+,AluJo,SINE,Alu,1,130,-182,28023001,28023313 +6 + chr21 28023138 28023205 chr21,28023138,28023205,+,AluJo,SINE,Alu,228,294,-18,28022911,28023223 +6 + chr21 28048414 28048537 chr21,28048251,28048623,+,THE1B,LTR,ERVL-MaLR,1,364,0,28048251,28048623 +1 + chr21 28090314 28090521 chr21,28087585,28090806,-,L1PB1,LINE,L1,-3303,3559,251,28084282,28091056 -1 - chr21 28102550 28102988 chr21,28101977,28102988,-,L4_C_Mam,LINE,RTE-X,-2353,2785,1752,28099624,28104739 -5 - chr21 28103301 28103580 chr21,28103301,28103587,+,AluSg,SINE,Alu,1,304,-6,28103301,28103593 +5 + chr21 28116110 28116681 chr21,28116110,28116681,-,L1MA3,LINE,L1,0,6305,5723,28116110,28122403 +6 - chr21 28116693 28116877 chr21,28116693,28116877,+,L1M4,LINE,L1,4616,4831,-1315,28112078,28118192 -6 + chr21 28116877 28117256 chr21,28116877,28117256,-,MSTA,LTR,ERVL-MaLR,0,428,1,28116877,28117256 +6 - chr21 28117256 28117493 chr21,28117256,28117493,+,L1M4,LINE,L1,4832,5074,-1072,28112425,28118565 -6 + chr21 28117546 28117576 chr21,28117546,28117576,+,L1MD,LINE,L1,5256,5282,-2713,28112291,28120289 -6 + chr21 28117576 28117877 chr21,28117576,28117877,+,AluYc,SINE,Alu,1,299,0,28117576,28117877 -6 + chr21 28117877 28118046 chr21,28117877,28118046,+,L1MD,LINE,L1,5283,5453,-2542,28112595,28120588 -6 + chr21 28118066 28118429 chr21,28118066,28118429,+,MER47B,DNA,TcMar-Tigger,12,417,-1,28118055,28118430 -6 + chr21 28118501 28118563 chr21,28118501,28118563,-,MSTA1,LTR,ERVL-MaLR,-26,439,375,28118475,28118937 +6 - chr21 28118602 28118989 chr21,28118602,28118989,+,L1ME2,LINE,L1,5769,6162,-2,28112834,28118991 -6 + chr21 28119008 28119540 chr21,28119008,28119540,+,L1ME2,LINE,L1,5431,5970,-194,28113578,28119734 -6 + chr21 28119547 28119593 chr21,28119547,28119593,+,L1MC1,LINE,L1,5672,5714,-619,28113876,28120212 -6 + chr21 28119593 28119874 chr21,28119593,28119875,-,AluJb,SINE,Alu,-14,298,5,28119579,28119879 +2 - chr21 28130348 28130482 chr21,28130348,28130482,-,MSTA,LTR,ERVL-MaLR,-294,134,1,28130054,28130482 -6 - chr21 28130482 28130622 chr21,28130482,28132130,-,MSTA-int,LTR,ERVL-MaLR,0,1651,1,28130482,28132130 -4 - chr21 28135314 28135708 chr21,28135237,28135794,+,MLT2B3,LTR,ERVL,1,554,0,28135237,28135794 +5 + chr21 28137024 28137158 chr21,28137024,28137158,-,MamRep605,LTR?,LTR?,-247,602,453,28136777,28137610 -6 - chr21 28163602 28163717 chr21,28162364,28164622,+,HERVH-int,LTR,ERV1,793,2995,-4718,28161572,28169340 -5 + chr21 28225884 28225991 chr21,28225800,28226126,-,THE1B,LTR,ERVL-MaLR,0,364,1,28225800,28226126 +3 - chr21 28439850 28439962 chr21,28439850,28439962,-,UCON37,Unknown,Unknown,-21,122,1,28439829,28439962 +6 - chr21 28440678 28440793 chr21,28440678,28440793,-,L2c,LINE,L2,-2,3373,3253,28440676,28444045 +6 - chr21 28440900 28440971 chr21,28440900,28440971,-,L2b,LINE,L2,-2,3373,3309,28440898,28444279 +6 - chr21 28441137 28441321 chr21,28441137,28441321,-,L2c,LINE,L2,-173,3214,3030,28440964,28444350 +6 - chr21 28441352 28442172 chr21,28441352,28442172,+,Tigger20a,DNA,TcMar-Tigger,13,887,-86,28441340,28442258 -6 + chr21 28443326 28443656 chr21,28443326,28443656,+,MSTD,LTR,ERVL-MaLR,3,396,0,28443324,28443656 -6 + chr21 28444568 28444617 chr21,28444568,28444617,-,MIR3,SINE,MIR,-4,204,155,28444564,28444771 +6 - chr21 28482957 28483069 chr21,28482943,28483084,+,MER5A1,DNA,hAT-Charlie,1,161,-5,28482943,28483089 -3 + chr21 28539394 28539851 chr21,28539394,28539851,+,MLT1C,LTR,ERVL-MaLR,2,464,-3,28539393,28539854 +6 + chr21 28540210 28540355 chr21,28540210,28540385,+,L1ME4b,LINE,L1,232,405,-487,28539979,28540872 +5 + chr21 28626585 28626676 chr21,28626563,28626693,+,AluJr,SINE,Alu,2,132,-180,28626562,28626873 -1 + chr21 28670981 28671004 chr21,28670630,28671004,-,THE1D,LTR,ERVL-MaLR,0,381,1,28670630,28671004 +5 - chr21 28674675 28674848 chr21,28674675,28675025,-,MLT1A0,LTR,ERVL-MaLR,-4,361,1,28674671,28675025 +1 - chr21 29024589 29024614 chr21,29024589,29024614,+,(GGT)n,Simple_repeat,Simple_repeat,1,26,0,29024589,29024614 -6 + chr21 29058157 29058192 chr21,29058157,29058459,+,AluSc,SINE,Alu,2,299,-10,29058156,29058469 -2 + chr21 29059677 29059807 chr21,29059677,29059807,-,L3,LINE,CR1,-92,4007,3845,29059585,29063651 +6 - chr21 29059867 29059989 chr21,29059867,29059989,-,L3,LINE,CR1,-1213,2886,2769,29058654,29062757 +6 - chr21 29193480 29193674 chr21,29193019,29193674,+,MER50B,LTR,ERV1,1,674,-23,29193019,29193697 +1 + chr21 29193714 29194046 chr21,29193714,29194046,-,AluSz,SINE,Alu,-2,310,1,29193712,29194046 -1 - chr21 29228961 29229026 chr21,29228673,29229505,+,L3,LINE,CR1,2976,3773,-326,29225698,29229831 +3 + chr21 29352579 29352663 chr21,29352562,29352711,-,AluSx3,SINE,Alu,-41,270,132,29352521,29352842 -3 - chr21 29359037 29359096 chr21,29359037,29359096,+,(AAT)n,Simple_repeat,Simple_repeat,1,59,0,29359037,29359096 +6 + chr21 29361031 29361133 chr21,29360871,29361133,+,L2a,LINE,L2,3181,3419,-7,29357691,29361140 +2 + chr21 29370019 29370216 chr21,29369936,29370307,-,THE1D,LTR,ERVL-MaLR,0,381,1,29369936,29370307 +5 - chr21 29371735 29371769 chr21,29371699,29371809,-,MIRb,SINE,MIR,-94,174,45,29371605,29371853 -3 - chr21 29373574 29373625 chr21,29373574,29373625,+,MIR3,SINE,MIR,42,92,-116,29373533,29373741 +6 + chr21 29375798 29376015 chr21,29375717,29376015,-,AluSz,SINE,Alu,-14,298,1,29375703,29376015 +4 - chr21 29500273 29500386 chr21,29500273,29500387,+,L2b,LINE,L2,3242,3375,0,29497032,29500387 +5 + chr21 29760020 29760065 chr21,29760017,29760157,-,MIRb,SINE,MIR,-79,189,23,29759938,29760179 -3 - chr21 30089717 30089991 chr21,30089541,30090031,+,MLT1F,LTR,ERVL-MaLR,23,523,-25,30089519,30090056 +1 + chr21 31560355 31560487 chr21,31560355,31560491,+,L2a,LINE,L2,2698,2848,-571,31557658,31561062 +5 + chr21 31653593 31653667 chr21,31653586,31653667,+,MER30,DNA,hAT-Charlie,91,184,-46,31653496,31653713 -5 + chr21 31653696 31653823 chr21,31653696,31653823,+,LTR81C,LTR,Gypsy,974,1106,-47,31652723,31653870 -6 + chr21 31653839 31653973 chr21,31653839,31653973,+,AluJo,SINE,Alu,1,133,-179,31653839,31654152 -6 + chr21 31653974 31654011 chr21,31653974,31654011,+,AluJb,SINE,Alu,132,168,-144,31653843,31654155 -6 + chr21 31654011 31655337 chr21,31654011,31655337,+,LTR12C,LTR,ERV1,2,1579,0,31654010,31655337 -6 + chr21 31655337 31655427 chr21,31655337,31655482,+,AluJb,SINE,Alu,169,310,-2,31655169,31655484 -2 + chr21 31658032 31658083 chr21,31658032,31658083,-,Zaphod,DNA,hAT-Tip100,-3965,66,16,31654067,31658098 +6 - chr21 31658107 31658227 chr21,31658107,31658234,-,L3,LINE,CR1,-104,3995,3862,31658003,31662095 +2 - chr21 32020966 32021017 chr21,32020937,32021017,+,MIR,SINE,MIR,79,159,-103,32020859,32021120 -5 + chr21 32021021 32021195 chr21,32021021,32021195,+,LTR16A2,LTR,ERVL,8,186,-309,32021014,32021504 -6 + chr21 32080316 32080487 chr21,32080285,32080487,-,MLT1N2,LTR,ERVL-MaLR,-16,546,343,32080269,32080829 +5 - chr21 32080503 32080517 chr21,32080503,32080724,-,Arthur1,DNA,hAT-Tip100,-42,3905,3704,32080461,32084427 +2 - chr21 32156408 32156502 chr21,32155054,32156730,-,MER4B-int,LTR,ERV1,-439,6319,4452,32154615,32161181 +3 - chr21 32260303 32260374 chr21,32260303,32260374,-,L2b,LINE,L2,-211,3164,3094,32260092,32263467 +6 - chr21 32260730 32261002 chr21,32260730,32261002,+,AluSx,SINE,Alu,1,274,-38,32260730,32261040 -6 + chr21 32261545 32261585 chr21,32261545,32261735,-,L2a,LINE,L2,0,3426,3220,32261545,32264954 +1 - chr21 32280593 32280667 chr21,32280516,32280667,-,FLAM_C,SINE,Alu,-82,220,1,32280434,32280667 -2 - chr21 32280865 32280988 chr21,32280865,32281119,-,ORSL,DNA,hAT-Tip100,-2,273,5,32280863,32281123 -5 - chr21 32306799 32306826 chr21,32306799,32307010,-,Tigger4a,DNA,TcMar-Tigger,0,236,2,32306799,32307011 +2 - chr21 32308651 32308737 chr21,32308651,32308918,+,MLT1M,LTR,ERVL-MaLR,166,442,-230,32308486,32309148 -1 + chr21 32393754 32393863 chr21,32393754,32393863,+,MIRc,SINE,MIR,115,225,-43,32393640,32393906 +6 + chr21 32572238 32572271 chr21,32572219,32572271,+,(GTTTT)n,Simple_repeat,Simple_repeat,1,53,0,32572219,32572271 -5 + chr21 32572276 32572558 chr21,32572276,32572558,-,AluSx3,SINE,Alu,-37,274,1,32572239,32572558 +6 - chr21 32572558 32572595 chr21,32572558,32572846,-,MER1A,DNA,hAT-Charlie,-195,334,44,32572363,32572889 +2 - chr21 32729254 32729546 chr21,32729254,32729546,-,AluY,SINE,Alu,-19,292,1,32729235,32729546 -6 - chr21 32730011 32730195 chr21,32730011,32730195,+,Helitron3Na_Mam,RC,Helitron,35,233,-253,32729977,32730448 +6 + chr21 32730249 32730621 chr21,32730249,32730621,+,MLT1C,LTR,ERVL-MaLR,90,467,0,32730160,32730621 +1 + chr21 32732519 32732666 chr21,32732441,32732666,+,LTR16B2,LTR,ERVL,218,462,0,32732224,32732666 +2 + chr21 32733589 32733657 chr21,32733392,32733734,+,THE1C,LTR,ERVL-MaLR,1,375,0,32733392,32733734 +3 + chr21 32737373 32737387 chr21,32737297,32737387,+,X9_LINE,LINE,L1,56,147,-789,32737242,32738176 +2 + chr21 32742264 32742695 chr21,32742264,32742695,+,L2b,LINE,L2,2841,3342,-33,32739424,32742728 +6 + chr21 32742724 32742974 chr21,32742724,32742974,+,Tigger7,DNA,TcMar-Tigger,2234,2491,0,32740491,32742974 +6 + chr21 32772204 32772244 chr21,32772204,32772244,+,GA-rich,Low_complexity,Low_complexity,1,41,0,32772204,32772244 +6 + chr21 32784775 32784919 chr21,32784743,32784931,-,L1MC4,LINE,L1,-472,7570,7382,32784271,32792312 -3 - chr21 32788612 32788693 chr21,32788344,32788693,+,Tigger20a,DNA,TcMar-Tigger,595,973,0,32787750,32788693 +2 + chr21 32790673 32790740 chr21,32790587,32790740,-,MER41A,LTR,ERV1,0,634,481,32790587,32791220 +5 - chr21 32790798 32791149 chr21,32790798,32791149,+,MER102c,DNA,hAT-Charlie,1,325,-2103,32790798,32793252 -6 + chr21 32797259 32797548 chr21,32797259,32797548,-,AluSx,SINE,Alu,-13,299,2,32797246,32797549 -5 - chr21 32797548 32797689 chr21,32797548,32797689,+,L2a,LINE,L2,3243,3425,-1,32794306,32797690 +6 + chr21 32797722 32798002 chr21,32797722,32798002,-,MLT1K,LTR,ERVL-MaLR,-13,582,307,32797709,32798308 -6 - chr21 32798004 32798029 chr21,32798004,32798029,+,(AATA)n,Simple_repeat,Simple_repeat,1,26,0,32798004,32798029 +6 + chr21 32798053 32798266 chr21,32798053,32798266,+,AluJb,SINE,Alu,2,216,-96,32798052,32798362 +6 + chr21 32798267 32798321 chr21,32798267,32798321,+,MLT1B,LTR,ERVL-MaLR,331,388,-2,32797937,32798323 +6 + chr21 32798595 32798679 chr21,32798595,32798679,+,AluJb,SINE,Alu,214,297,-15,32798382,32798694 +6 + chr21 32798682 32798969 chr21,32798682,32798974,+,AluSz,SINE,Alu,1,297,-15,32798682,32798989 +5 + chr21 32844367 32844500 chr21,32844205,32844500,-,AluJr,SINE,Alu,-23,289,14,32844182,32844513 +5 - chr21 32851938 32851967 chr21,32851938,32851967,+,A-rich,Low_complexity,Low_complexity,1,29,0,32851938,32851967 +6 + chr21 32851968 32852008 chr21,32851968,32852008,+,(CAA)n,Simple_repeat,Simple_repeat,1,42,0,32851968,32852008 +6 + chr21 32913710 32913832 chr21,32913710,32913832,-,LTR33,LTR,ERVL,-370,145,16,32913340,32913847 +6 - chr21 33062792 33062816 chr21,33062676,33062892,-,MIR,SINE,MIR,0,268,31,33062676,33062922 -3 - chr21 33071067 33071102 chr21,33071067,33071102,+,(GGCCTC)n,Simple_repeat,Simple_repeat,1,36,0,33071067,33071102 -6 + chr21 33158776 33159000 chr21,33158553,33159000,+,MLT1G3,LTR,ERVL-MaLR,14,461,-118,33158540,33159118 +2 + chr21 33158986 33159110 chr21,33158986,33159208,+,LTR85c,LTR,Gypsy?,387,604,-219,33158600,33159427 +5 + chr21 33165512 33165543 chr21,33165512,33165543,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,33165512,33165543 -6 + chr21 33168443 33168502 chr21,33168198,33168502,-,L2,LINE,L2,-447,2972,2670,33167751,33171171 +4 - chr21 33168543 33168581 chr21,33168543,33168653,-,LTR16E2,LTR,ERVL,-7,561,448,33168536,33169100 +2 - chr21 33263873 33264157 chr21,33263843,33264157,-,AluSx1,SINE,Alu,-1,311,2,33263842,33264158 +5 - chr21 33264706 33264996 chr21,33264706,33264996,+,AluSz6,SINE,Alu,1,288,-24,33264706,33265020 -6 + chr21 33265045 33265174 chr21,33265045,33265174,+,MIR3,SINE,MIR,30,174,-34,33265016,33265208 -6 + chr21 33265569 33265594 chr21,33265569,33265594,+,(TG)n,Simple_repeat,Simple_repeat,1,25,0,33265569,33265594 -6 + chr21 33309858 33310181 chr21,33309858,33310228,+,MLT1A,LTR,ERVL-MaLR,1,374,0,33309858,33310228 +5 + chr21 33482499 33482588 chr21,33482448,33482856,-,MSTD,LTR,ERVL-MaLR,0,396,1,33482448,33482856 +5 - chr21 33483006 33483059 chr21,33482941,33483243,+,AluSx,SINE,Alu,1,300,-12,33482941,33483255 -3 + chr21 33923338 33923477 chr21,33923319,33923477,-,AluJb,SINE,Alu,-19,293,137,33923300,33923613 -1 - chr21 33931160 33931606 chr21,33925606,33931606,-,L1PA2,LINE,L1,0,6155,129,33925606,33931734 -1 - chr21 33938225 33938372 chr21,33937911,33938395,+,MER57A1,LTR,ERV1,42,430,-2,33937870,33938397 +5 + chr21 33943034 33943145 chr21,33943021,33943302,-,AluSz,SINE,Alu,-21,291,1,33943000,33943302 -5 - chr21 33943556 33943596 chr21,33943499,33943670,-,MIR,SINE,MIR,-1,261,86,33943498,33943755 -1 - chr21 33943625 33943670 chr21,33943499,33943670,-,MIR,SINE,MIR,-1,261,86,33943498,33943755 -1 - chr21 33944588 33944935 chr21,33944335,33945336,+,L1MC1,LINE,L1,5313,6327,-6,33939023,33945342 +1 + chr21 33945810 33945895 chr21,33945808,33945927,+,FLAM_C,SINE,Alu,2,133,-10,33945807,33945937 +1 + chr21 33962065 33962220 chr21,33962002,33962220,-,L2,LINE,L2,-559,2860,2617,33961443,33964836 -2 - chr21 33962470 33962920 chr21,33962470,33962920,+,MER65D,LTR,ERV1,1,473,0,33962470,33962920 +6 + chr21 33962940 33963308 chr21,33962940,33963308,+,L2a,LINE,L2,2327,2699,-720,33960614,33964028 +6 + chr21 33963355 33963792 chr21,33963355,33963792,+,L2a,LINE,L2,2956,3374,-52,33960400,33963844 +6 + chr21 33963917 33963958 chr21,33963917,33963962,+,L2a,LINE,L2,3380,3423,-3,33960538,33963965 +5 + chr21 33967024 33967109 chr21,33966900,33967109,+,MIRb,SINE,MIR,15,232,-36,33966886,33967145 +5 + chr21 33967199 33967380 chr21,33967199,33967380,+,L2c,LINE,L2,3213,3370,-17,33963987,33967397 +6 + chr21 33967199 33967350 chr21,33967199,33967380,+,L2c,LINE,L2,3213,3370,-17,33963987,33967397 -2 + chr21 33968233 33968573 chr21,33968191,33968612,-,MLT1J,LTR,ERVL-MaLR,-19,429,1,33968172,33968612 +1 - chr21 33969237 33969331 chr21,33969208,33969331,+,L2b,LINE,L2,3222,3367,-8,33965987,33969339 +2 + chr21 33970945 33971257 chr21,33970945,33971257,-,AluSz,SINE,Alu,-1,311,1,33970944,33971257 -5 - chr21 33971510 33971538 chr21,33971510,33971538,+,(AC)n,Simple_repeat,Simple_repeat,1,28,0,33971510,33971538 +6 + chr21 33971595 33971721 chr21,33971595,33971721,+,MIRb,SINE,MIR,4,141,-127,33971592,33971848 +6 + chr21 33971721 33972208 chr21,33971721,33972208,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,33971719,33972208 -6 - chr21 33972214 33972513 chr21,33972214,33972513,-,AluSx1,SINE,Alu,-12,300,1,33972202,33972513 -6 - chr21 33972821 33972975 chr21,33972821,33972975,+,AluJr,SINE,Alu,137,293,-19,33972685,33972994 +6 + chr21 33974049 33974118 chr21,33974049,33974118,+,(AC)n,Simple_repeat,Simple_repeat,1,69,0,33974049,33974118 +6 + chr21 33974410 33974634 chr21,33974410,33974634,-,L1MEg,LINE,L1,-4623,1461,1214,33969787,33975847 -6 - chr21 33974636 33974799 chr21,33974636,33974799,+,(TCCC)n,Simple_repeat,Simple_repeat,1,164,0,33974636,33974799 +6 + chr21 33974822 33975130 chr21,33974822,33975130,-,AluSq2,SINE,Alu,-5,308,1,33974817,33975130 -6 - chr21 33975132 33975540 chr21,33975132,33975540,-,L1MEg,LINE,L1,-5017,1067,644,33970115,33976183 -6 - chr21 33976314 33976359 chr21,33976314,33976359,+,(ACTC)n,Simple_repeat,Simple_repeat,1,45,0,33976314,33976359 +6 + chr21 33977149 33977244 chr21,33977149,33977244,-,MIRc,SINE,MIR,-135,133,37,33977014,33977280 -6 - chr21 33977588 33977691 chr21,33977588,33977703,-,L2a,LINE,L2,-18,3408,3251,33977570,33980953 -5 - chr21 34182757 34182883 chr21,34182757,34182883,+,LTR16E2,LTR,ERVL,444,568,0,34182314,34182883 +6 + chr21 34185866 34185946 chr21,34185835,34186276,+,MLT1C,LTR,ERVL-MaLR,2,463,-4,34185834,34186280 +1 + chr21 34188892 34189047 chr21,34188892,34189047,-,MIRb,SINE,MIR,-110,158,4,34188782,34189050 -6 - chr21 34189055 34189583 chr21,34189055,34189583,+,MLT2B4,LTR,ERVL,1,555,-1,34189055,34189584 +5 + chr21 34189583 34189922 chr21,34189583,34189973,+,THE1C,LTR,ERVL-MaLR,7,375,0,34189577,34189973 +5 + chr21 34215500 34215540 chr21,34215048,34215563,-,L1MEd,LINE,L1,-6223,880,385,34208825,34215947 -3 - chr21 34293681 34293756 chr21,34293668,34293792,+,L2b,LINE,L2,3244,3375,0,34290425,34293792 +3 + chr21 34324953 34324994 chr21,34324953,34324994,+,(AT)n,Simple_repeat,Simple_repeat,1,41,0,34324953,34324994 +6 + chr21 34324994 34325034 chr21,34324994,34325037,+,(TG)n,Simple_repeat,Simple_repeat,1,43,0,34324994,34325037 +5 + chr21 34359906 34360033 chr21,34359727,34360451,-,L1MEi,LINE,L1,-3111,3035,2238,34356616,34362688 -5 - chr21 34412522 34412587 chr21,34412522,34412877,-,THE1C,LTR,ERVL-MaLR,0,375,1,34412522,34412877 -5 - chr21 34425508 34425649 chr21,34425356,34425649,+,AluSp,SINE,Alu,2,293,-20,34425355,34425669 +1 + chr21 34425649 34426002 chr21,34425649,34426002,+,L1ME4b,LINE,L1,523,889,-3,34425127,34426005 +6 + chr21 34733961 34733975 chr21,34733885,34733975,-,MIR3,SINE,MIR,-86,122,32,34733799,34734006 +4 - chr21 34733999 34734041 chr21,34733999,34734168,+,MER5A,DNA,hAT-Charlie,5,189,0,34733995,34734168 -2 + chr21 34737110 34737181 chr21,34736861,34737522,-,L1ME4b,LINE,L1,0,892,208,34736861,34737729 +1 - chr21 34747781 34748058 chr21,34747760,34748058,-,AluSx1,SINE,Alu,-11,301,2,34747749,34748059 -2 - chr21 34782125 34782190 chr21,34781910,34782274,+,THE1B,LTR,ERVL-MaLR,1,364,0,34781910,34782274 +3 + chr21 34782581 34782701 chr21,34782466,34782701,-,MIR,SINE,MIR,0,262,11,34782466,34782711 -2 - chr21 34782838 34783035 chr21,34782838,34783035,-,Tigger19a,DNA,TcMar-Tigger,-97,226,8,34782741,34783042 -6 - chr21 34783273 34783729 chr21,34783273,34783729,-,MLT1C,LTR,ERVL-MaLR,-2,465,1,34783271,34783729 -6 - chr21 34783852 34783954 chr21,34783852,34783954,-,MamSINE1,SINE,tRNA-RTE,-152,138,36,34783700,34783989 -6 - chr21 34783982 34784027 chr21,34783982,34784027,-,MamSINE1,SINE,tRNA-RTE,-234,56,12,34783748,34784038 -6 - chr21 34784503 34784589 chr21,34784503,34784589,-,MER45A,DNA,hAT-Tip100,-1,177,99,34784502,34784687 -6 - chr21 34784589 34784886 chr21,34784589,34784886,+,AluSg,SINE,Alu,1,297,-13,34784589,34784899 +5 + chr21 35713139 35713447 chr21,35713092,35713530,-,MLT1D,LTR,ERVL-MaLR,0,505,1,35713092,35713530 +5 - chr21 36005338 36005443 chr21,36005107,36005443,+,MER48,LTR,ERV1,38,407,0,36005070,36005443 +1 + chr21 36005449 36005697 chr21,36005449,36005697,+,LTR81B,LTR,Gypsy,28,290,-1103,36005422,36006800 +6 + chr21 36007319 36007423 chr21,36007291,36007423,-,MIR,SINE,MIR,-103,159,23,36007188,36007445 -2 - chr21 36063506 36063569 chr21,36063424,36063822,+,HERVFH19-int,LTR,ERV1,277,676,-7043,36063148,36070865 +3 + chr21 36064217 36064408 chr21,36064210,36064667,+,MER49,LTR,ERV1,437,885,-38,36063774,36064705 +5 + chr21 36075531 36075547 chr21,36075305,36075547,+,L2,LINE,L2,1178,1423,-1996,36074128,36077543 -4 + chr21 36090108 36090220 chr21,36089908,36090220,-,AluJr,SINE,Alu,0,312,3,36089908,36090222 -2 - chr21 36090360 36090414 chr21,36090360,36090460,+,L1MC5,LINE,L1,8901,9012,-292,36081460,36090752 +5 + chr21 36098124 36098210 chr21,36098041,36098210,-,THE1D,LTR,ERVL-MaLR,0,381,213,36098041,36098422 +4 - chr21 36098210 36098259 chr21,36098210,36099320,+,HUERS-P3b-int,LTR,ERV1,1524,2642,-4776,36096687,36104096 -2 + chr21 36104881 36105123 chr21,36104755,36109248,+,HERVIP10FH-int,LTR,ERV1,1,7556,-181,36104755,36109429 +1 + chr21 36107598 36109248 chr21,36104755,36109248,+,HERVIP10FH-int,LTR,ERV1,1,7556,-181,36104755,36109429 +1 + chr21 36109248 36109690 chr21,36109248,36109719,+,LTR2C,LTR,ERV1,1,486,-15,36109248,36109734 +5 + chr21 36131911 36131950 chr21,36131911,36131950,+,(AAAT)n,Simple_repeat,Simple_repeat,1,40,0,36131911,36131950 -6 + chr21 36131952 36132377 chr21,36131952,36132377,+,L1MD,LINE,L1,2931,3395,-2751,36129022,36135128 -6 + chr21 36133160 36133319 chr21,36133160,36133319,+,AluJr,SINE,Alu,1,133,-179,36133160,36133498 -6 + chr21 36133319 36133473 chr21,36133319,36133620,+,AluSg,SINE,Alu,1,302,-8,36133319,36133628 -2 + chr21 36133687 36133792 chr21,36133620,36133792,+,AluJr,SINE,Alu,134,308,-4,36133487,36133796 -4 + chr21 36133847 36134006 chr21,36133847,36134138,-,AluSg,SINE,Alu,-15,295,3,36133832,36134140 +1 - chr21 36137094 36137109 chr21,36137054,36137109,+,MER5A1,DNA,hAT-Charlie,112,161,-5,36136943,36137114 -4 + chr21 36137127 36137193 chr21,36137127,36137193,+,MER5A,DNA,hAT-Charlie,6,61,-128,36137122,36137321 -6 + chr21 36137193 36137391 chr21,36137193,36137496,+,AluSx,SINE,Alu,1,312,0,36137193,36137496 -1 + chr21 36138295 36138449 chr21,36138163,36138449,-,AluSq2,SINE,Alu,-29,284,1,36138134,36138449 +4 - chr21 36138719 36138868 chr21,36138719,36139041,-,AluSz,SINE,Alu,0,312,4,36138719,36139044 +1 - chr21 36141396 36141567 chr21,36141276,36141567,-,MER47A,DNA,TcMar-Tigger,-75,291,2,36141201,36141568 +5 - chr21 36144979 36145076 chr21,36144821,36145121,+,AluSx1,SINE,Alu,1,300,-12,36144821,36145133 -3 + chr21 36146583 36146890 chr21,36146583,36146890,-,AluSq,SINE,Alu,-7,306,1,36146576,36146890 +1 - chr21 36146892 36146923 chr21,36146892,36146923,+,(TC)n,Simple_repeat,Simple_repeat,1,31,0,36146892,36146923 -6 + chr21 36146923 36147219 chr21,36146923,36147219,-,AluSp,SINE,Alu,-16,297,1,36146907,36147219 +6 - chr21 36147219 36147229 chr21,36147219,36147229,+,(TTTCTC)n,Simple_repeat,Simple_repeat,5,14,0,36147215,36147229 -6 + chr21 36147345 36147493 chr21,36147345,36147493,-,MER5A,DNA,hAT-Charlie,-7,159,1,36147338,36147493 +6 - chr21 36147533 36147625 chr21,36147533,36147630,-,HAL1b,LINE,L1,-1384,1037,932,36146149,36148561 +2 - chr21 36148205 36148523 chr21,36148205,36148523,-,AluJb,SINE,Alu,-10,302,5,36148195,36148527 +6 - chr21 36148537 36148826 chr21,36148537,36148826,-,AluSx,SINE,Alu,-15,297,13,36148522,36148838 +6 - chr21 36149057 36149361 chr21,36149057,36149361,+,AluJr,SINE,Alu,1,294,-18,36149057,36149379 -6 + chr21 36149797 36150104 chr21,36149797,36150104,+,AluJo,SINE,Alu,1,306,-6,36149797,36150110 -6 + chr21 36170471 36170568 chr21,36170315,36170609,+,AluSc,SINE,Alu,1,293,-16,36170315,36170625 -3 + chr21 36175766 36175815 chr21,36175509,36175821,+,AluSz,SINE,Alu,1,311,-1,36175509,36175822 -1 + chr21 36360688 36360747 chr21,36360688,36360747,-,L2c,LINE,L2,-226,3161,3101,36360462,36363847 -6 - chr21 36360822 36360858 chr21,36360822,36361087,+,AluSq,SINE,Alu,34,298,-15,36360789,36361102 +4 + chr21 36361674 36361889 chr21,36361604,36361889,+,AluSx1,SINE,Alu,1,293,-19,36361604,36361908 +2 + chr21 36445731 36445762 chr21,36445599,36445762,-,AluJb,SINE,Alu,-3,309,147,36445596,36445908 -1 - chr21 36445772 36445903 chr21,36445772,36445903,+,L1M6,LINE,L1,1630,1761,-4735,36444143,36450638 +1 + chr21 36445948 36446007 chr21,36445948,36446090,+,L1M4,LINE,L1,4019,4166,-1980,36441930,36448070 +4 + chr21 36486380 36486429 chr21,36486380,36486429,+,(GCT)n,Simple_repeat,Simple_repeat,1,50,0,36486380,36486429 +6 + chr21 36486976 36487282 chr21,36486976,36487282,-,AluSx1,SINE,Alu,-4,308,1,36486972,36487282 -6 - chr21 36532139 36532254 chr21,36532139,36532254,+,MIR1_Amn,SINE,MIR,10,139,-91,36532130,36532345 +6 + chr21 36532377 36532408 chr21,36532377,36532409,+,A-rich,Low_complexity,Low_complexity,1,32,0,36532377,36532409 +5 + chr21 36633365 36633497 chr21,36633365,36633497,+,MIRb,SINE,MIR,72,211,-57,36633294,36633554 -6 + chr21 36636791 36637033 chr21,36636636,36637574,-,HAL1ME,LINE,L1,-686,1779,844,36635950,36638417 +1 - chr21 36968554 36968604 chr21,36968413,36968604,+,L1MEi,LINE,L1,64,275,-1937,36968350,36970541 +2 + chr21 36968740 36968807 chr21,36968740,36968842,-,LTR107_Mam,LTR,LTR,-238,332,227,36968502,36969068 -4 - chr21 36969601 36969620 chr21,36969581,36969872,-,AluSx,SINE,Alu,-14,298,1,36969567,36969872 -3 - chr21 36971765 36971828 chr21,36971546,36971845,+,AluSx,SINE,Alu,1,299,-13,36971546,36971858 +5 + chr21 37210101 37210114 chr21,37210101,37210507,-,MER66B,LTR,ERV1,0,486,84,37210101,37210590 -4 - chr21 37214102 37214153 chr21,37214102,37214403,+,AluSg4,SINE,Alu,1,299,-11,37214102,37214414 +4 + chr21 37216405 37216460 chr21,37216351,37216460,-,MER33,DNA,hAT-Charlie,-166,158,25,37216185,37216484 -2 - chr21 38006733 38006773 chr21,38006733,38006773,+,(TTC)n,Simple_repeat,Simple_repeat,1,40,0,38006733,38006773 -6 + chr21 38208414 38208453 chr21,38208414,38208453,+,(GT)n,Simple_repeat,Simple_repeat,1,39,0,38208414,38208453 +6 + chr21 38237217 38237414 chr21,38237140,38237499,-,LTR52,LTR,ERVL,-19,402,1,38237121,38237499 +5 - chr21 38323635 38323898 chr21,38323589,38324106,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,38323589,38324106 +5 - chr21 38325783 38325844 chr21,38325746,38325844,+,MIR1_Amn,SINE,MIR,17,127,-103,38325730,38325947 -4 + chr21 38326352 38326545 chr21,38326155,38326662,-,LTR53,LTR,ERVL,0,519,1,38326155,38326662 +5 - chr21 38332426 38332477 chr21,38332363,38332723,-,MSTD,LTR,ERVL-MaLR,-9,387,1,38332354,38332723 +3 - chr21 38742415 38742459 chr21,38742415,38742459,+,MER103C,DNA,hAT-Charlie,114,159,-138,38742302,38742597 -6 + chr21 38746299 38746416 chr21,38746142,38746451,+,AluJb,SINE,Alu,2,310,-2,38746141,38746453 -3 + chr21 38747397 38747460 chr21,38747318,38747728,-,MSTA,LTR,ERVL-MaLR,-4,424,1,38747314,38747728 +1 - chr21 38848229 38848287 chr21,38847949,38848287,-,Charlie18a,DNA,hAT-Charlie,0,342,5,38847949,38848291 -2 - chr21 38848600 38848644 chr21,38848600,38848829,-,L1MA9,LINE,L1,-8,6304,6052,38848592,38854880 -5 - chr21 38877291 38878074 chr21,38877285,38878074,-,L1ME3,LINE,L1,-1,6161,5349,38877284,38883422 +5 - chr21 38878092 38878301 chr21,38878092,38878301,-,MER58A,DNA,hAT-Charlie,-19,205,1,38878073,38878301 +6 - chr21 38878306 38878436 chr21,38878306,38878436,-,L1ME3,LINE,L1,-793,5353,5226,38877513,38883661 +6 - chr21 38878998 38879145 chr21,38878998,38879145,-,MIRb,SINE,MIR,-102,166,6,38878896,38879150 +6 - chr21 38879160 38879326 chr21,38879160,38879326,-,MIR3,SINE,MIR,-13,195,35,38879147,38879360 +6 - chr21 38888772 38888893 chr21,38888287,38889968,+,LTR49-int,LTR,ERV1,4614,6323,-8,38883674,38889976 +1 + chr21 38901901 38901965 chr21,38901650,38902085,-,Tigger2a,DNA,TcMar-Tigger,0,434,1,38901650,38902085 +3 - chr21 38937883 38938022 chr21,38937883,38938022,-,MER91A,DNA,hAT-Tip100,-44,152,1,38937839,38938022 +6 - chr21 38938232 38938414 chr21,38938232,38938414,+,(TC)n,Simple_repeat,Simple_repeat,1,188,0,38938232,38938414 -6 + chr21 38956445 38956467 chr21,38956445,38956680,-,MIRb,SINE,MIR,-12,256,17,38956433,38956696 +1 - chr21 38974721 38974828 chr21,38974721,38974828,-,MIR3,SINE,MIR,0,208,101,38974721,38974928 +6 - chr21 38974982 38975098 chr21,38974982,38975098,-,MIRc,SINE,MIR,-32,236,110,38974950,38975207 +6 - chr21 38977711 38977771 chr21,38977658,38977771,+,L2c,LINE,L2,3276,3386,-1,38974383,38977772 -4 + chr21 38988707 38989426 chr21,38988551,38989426,-,MER49,LTR,ERV1,-9,914,5,38988542,38989430 +5 - chr21 39008102 39008212 chr21,39008100,39008212,-,MIR3,SINE,MIR,-62,146,34,39008038,39008245 +4 - chr21 39011232 39011329 chr21,39011232,39011369,-,L2,LINE,L2,-616,2803,2668,39010616,39014036 +1 - chr21 39028536 39028601 chr21,39028461,39028601,-,MIRb,SINE,MIR,-104,164,22,39028357,39028622 +5 - chr21 39217093 39217177 chr21,39217084,39217396,-,AluSx,SINE,Alu,-6,306,1,39217078,39217396 +5 - chr21 39219402 39219440 chr21,39219141,39219440,+,AluSx,SINE,Alu,4,303,-9,39219138,39219449 -4 + chr21 39314755 39314962 chr21,39314755,39314988,+,MIR,SINE,MIR,14,262,0,39314742,39314988 +5 + chr21 39597147 39597462 chr21,39597095,39597462,-,THE1C,LTR,ERVL-MaLR,0,375,3,39597095,39597464 +5 - chr21 39597471 39597989 chr21,39597471,39598066,+,MLT1E2,LTR,ERVL-MaLR,1,620,-7,39597471,39598073 -2 + chr21 39605599 39605906 chr21,39605598,39605906,-,AluJo,SINE,Alu,-6,306,11,39605592,39605916 +5 - chr21 39612310 39612408 chr21,39612310,39612408,+,MIR,SINE,MIR,78,175,-87,39612233,39612495 -6 + chr21 39722521 39722551 chr21,39722521,39722639,+,MLT1I,LTR,ERVL-MaLR,281,411,0,39722241,39722639 +4 + chr21 39727770 39727940 chr21,39727770,39727940,+,LTR16E1,LTR,ERVL,5,178,-360,39727766,39728300 +1 + chr21 39729133 39729461 chr21,39729043,39729461,-,MLT1J,LTR,ERVL-MaLR,0,512,24,39729043,39729484 -2 - chr21 39729698 39729720 chr21,39729698,39729720,+,(AATA)n,Simple_repeat,Simple_repeat,1,22,0,39729698,39729720 +6 + chr21 39729978 39730473 chr21,39729978,39730473,-,MLT1C,LTR,ERVL-MaLR,0,467,1,39729978,39730473 -6 - chr21 40383083 40383359 chr21,40383047,40383359,+,AluSx,SINE,Alu,1,311,-1,40383047,40383360 +1 + chr21 40383652 40383927 chr21,40383638,40383927,+,MER113,DNA,hAT-Charlie,208,521,0,40383431,40383927 +2 + chr21 40384579 40384611 chr21,40384325,40384611,+,AluSp,SINE,Alu,1,287,-26,40384325,40384637 +2 + chr21 40384888 40385310 chr21,40384888,40385310,-,L1ME3Cz,LINE,L1,-59,938,525,40384829,40385834 -6 - chr21 40385328 40385358 chr21,40385328,40385443,+,L2a,LINE,L2,3307,3426,0,40382022,40385443 +5 + chr21 40615378 40615404 chr21,40615328,40615404,+,L1ME4a,LINE,L1,5986,6057,-67,40609343,40615471 -5 + chr21 40629540 40629641 chr21,40629420,40629749,+,MLT1I,LTR,ERVL-MaLR,57,411,0,40629364,40629749 -3 + chr21 41141493 41141585 chr21,41141469,41141585,+,L2a,LINE,L2,3305,3422,-4,41138165,41141589 -5 + chr21 41141709 41141740 chr21,41141709,41141740,+,(TC)n,Simple_repeat,Simple_repeat,1,31,0,41141709,41141740 -6 + chr21 41142428 41142657 chr21,41142428,41142657,-,MIR,SINE,MIR,-18,250,3,41142410,41142659 +6 - chr21 41175935 41176136 chr21,41175935,41176136,+,MIR3,SINE,MIR,2,198,-10,41175934,41176146 -6 + chr21 41176195 41176257 chr21,41176195,41176257,-,MER5A1,DNA,hAT-Charlie,-3,163,95,41176192,41176351 +6 - chr21 41176407 41176458 chr21,41176407,41176458,-,MER5A,DNA,hAT-Charlie,-76,113,63,41176331,41176520 +5 - chr21 41176735 41176901 chr21,41176735,41176901,-,MER5C,DNA,hAT-Charlie,0,313,136,41176735,41177036 +6 - chr21 41177610 41177692 chr21,41177610,41177692,+,MIRb,SINE,MIR,177,253,-15,41177434,41177707 -6 + chr21 41177942 41178156 chr21,41177942,41178156,+,MER20,DNA,hAT-Charlie,4,219,0,41177939,41178156 -6 + chr21 41178452 41178740 chr21,41178452,41178740,+,AluJr,SINE,Alu,1,286,-26,41178452,41178766 -6 + chr21 41178742 41179150 chr21,41178742,41179150,-,L2a,LINE,L2,-22,3404,2942,41178720,41182091 +6 - chr21 41179818 41179883 chr21,41179818,41179883,-,LTR16C,LTR,ERVL,-14,475,409,41179804,41180291 +6 - chr21 41180097 41180284 chr21,41179883,41180329,-,MER66B,LTR,ERV1,0,486,1,41179883,41180329 -1 - chr21 41179883 41180329 chr21,41179883,41180329,-,MER66B,LTR,ERV1,0,486,1,41179883,41180329 +1 - chr21 41180433 41180626 chr21,41180329,41182427,-,MER66-int,LTR,ERV1,0,6676,4608,41180329,41187034 -5 - chr21 41180329 41182427 chr21,41180329,41182427,-,MER66-int,LTR,ERV1,0,6676,4608,41180329,41187034 +5 - chr21 41182538 41182695 chr21,41182538,41182695,+,MER4B-int,LTR,ERV1,6395,6563,-195,41176144,41182890 -6 + chr21 41182713 41185239 chr21,41182713,41186600,-,MER66-int,LTR,ERV1,-2709,3967,1,41180004,41186600 +1 - chr21 41186123 41186342 chr21,41182713,41186600,-,MER66-int,LTR,ERV1,-2709,3967,1,41180004,41186600 +1 - chr21 41186448 41186600 chr21,41182713,41186600,-,MER66-int,LTR,ERV1,-2709,3967,1,41180004,41186600 +1 - chr21 41186600 41186788 chr21,41186600,41187083,-,MER66B,LTR,ERV1,0,486,1,41186600,41187083 +1 - chr21 41442678 41442746 chr21,41442678,41443135,+,L1MB3,LINE,L1,5712,6183,0,41436967,41443135 -2 + chr21 41559125 41559226 chr21,41559063,41559226,+,L1MEd,LINE,L1,1441,1612,-5474,41557623,41564700 -5 + chr21 41559226 41559367 chr21,41559226,41559367,+,MER5B,DNA,hAT-Charlie,2,178,0,41559225,41559367 -6 + chr21 41560332 41560392 chr21,41560311,41560392,-,L2c,LINE,L2,-5,3382,3301,41560306,41563692 +4 - chr21 41576169 41576425 chr21,41576169,41576441,-,MLT1E1A,LTR,ERVL-MaLR,-93,587,318,41576076,41576758 +2 - chr21 41679214 41679302 chr21,41679214,41679302,-,MIRb,SINE,MIR,-143,125,32,41679071,41679333 -6 - chr21 41697238 41697336 chr21,41697196,41697908,+,Ricksha_0,DNA,MULE-MuDR,1046,1733,0,41696151,41697908 +5 + chr21 41711669 41712172 chr21,41711669,41712172,-,MLT1C,LTR,ERVL-MaLR,0,467,1,41711669,41712172 +5 - chr21 41712191 41712254 chr21,41712191,41712254,+,GA-rich,Low_complexity,Low_complexity,1,66,0,41712191,41712254 -6 + chr21 41712470 41712663 chr21,41712470,41712663,+,LTR33A_,LTR,ERVL,216,413,-118,41712255,41712781 -6 + chr21 41712719 41712861 chr21,41712719,41712861,+,MER53,DNA,hAT,24,190,-3,41712696,41712864 -5 + chr21 41716527 41716544 chr21,41716527,41716925,+,MLT1D,LTR,ERVL-MaLR,123,504,-1,41716405,41716926 +4 + chr21 41717098 41717174 chr21,41717098,41717178,-,MIR3,SINE,MIR,-23,185,106,41717075,41717283 -4 - chr21 41870805 41870899 chr21,41870805,41870984,+,MIR3,SINE,MIR,3,183,-25,41870803,41871009 +4 + chr21 41874968 41875020 chr21,41874968,41875020,+,AluJo,SINE,Alu,14,65,-247,41874955,41875267 -6 + chr21 42022023 42022069 chr21,42022002,42022069,-,MER54A,LTR,ERVL,0,901,836,42022002,42022904 -1 - chr21 42022400 42022430 chr21,42022400,42022838,+,MLT1C,LTR,ERVL-MaLR,1,467,0,42022400,42022838 +4 + chr21 42102757 42103264 chr21,42102757,42103264,-,LTR40a,LTR,ERVL,0,519,1,42102757,42103264 +6 - chr21 42509245 42509260 chr21,42509039,42509260,-,HAL1,LINE,L1,-3,2504,2272,42509036,42511531 -2 - chr21 42509592 42509658 chr21,42509592,42509658,+,L2c,LINE,L2,3329,3405,-21,42506264,42509679 +5 + chr21 42561689 42561838 chr21,42561689,42561838,+,MER102a,DNA,hAT-Charlie,54,224,-106,42561636,42561944 -6 + chr21 42599280 42599568 chr21,42599201,42599568,-,THE1D,LTR,ERVL-MaLR,0,381,1,42599201,42599568 +5 - chr21 42599725 42600848 chr21,42599725,42600906,-,ERV3-16A3_I-int,LTR,ERVL,-1885,3341,2159,42597840,42603064 +2 - chr21 42648275 42648585 chr21,42648275,42648585,-,AluSc,SINE,Alu,-1,308,1,42648274,42648585 +6 - chr21 42650569 42651010 chr21,42650569,42651010,+,MLT2B2,LTR,ERVL,6,512,-3,42650564,42651013 -6 + chr21 42651014 42651244 chr21,42651014,42651720,+,L2a,LINE,L2,2677,3393,-33,42648338,42651753 -1 + chr21 42733839 42734208 chr21,42733839,42734208,+,MSTB,LTR,ERVL-MaLR,1,426,0,42733839,42734208 -6 + chr21 42734570 42734682 chr21,42734570,42734685,-,AluSx3,SINE,Alu,-10,301,187,42734560,42734871 +2 - chr21 42831040 42831112 chr21,42830937,42831112,+,MIRb,SINE,MIR,35,230,-38,42830903,42831150 -5 + chr21 42834961 42835033 chr21,42834961,42835189,+,FordPrefect,DNA,hAT-Tip100,780,1032,-651,42834182,42835840 -2 + chr21 42836448 42836477 chr21,42836236,42836513,-,AluSx,SINE,Alu,-16,296,1,42836220,42836513 +1 - chr21 42916803 42917113 chr21,42916741,42917113,-,MER48,LTR,ERV1,0,407,1,42916741,42917113 +5 - chr21 42917113 42918026 chr21,42917113,42918026,-,HERVH48-int,LTR,ERV1,-229,7618,5794,42916884,42923819 +5 - chr21 42919107 42919343 chr21,42919107,42922458,-,HERVH48-int,LTR,ERV1,-831,5823,2508,42918276,42924965 +1 - chr21 42925346 42925502 chr21,42925244,42925502,-,HERVH48-int,LTR,ERV1,-6399,255,2,42918845,42925503 +4 - chr21 42925506 42925646 chr21,42925506,42925876,-,MER48,LTR,ERV1,-3,404,1,42925503,42925876 +1 - chr21 42964639 42964814 chr21,42964570,42964988,-,MLT2D,LTR,ERVL,0,414,6,42964570,42964993 +5 - chr21 42965276 42965363 chr21,42965276,42965407,-,AluJr,SINE,Alu,-179,133,1,42965097,42965407 +1 - chr21 43140523 43140798 chr21,43140199,43140798,-,MER6,DNA,TcMar-Tigger,-153,712,111,43140046,43140908 +5 - chr21 43322733 43322849 chr21,43322733,43322915,-,LTR16B2,LTR,ERVL,-2,460,281,43322731,43323195 +2 - chr21 43326159 43326178 chr21,43326046,43326178,+,MIRb,SINE,MIR,49,198,-70,43325998,43326248 -4 + chr21 43331856 43332039 chr21,43331778,43332175,-,MLT1K,LTR,ERVL-MaLR,-11,584,148,43331767,43332322 +1 - chr21 43358147 43358206 chr21,43358127,43358206,+,L3,LINE,CR1,1928,2010,-2089,43356200,43360295 -5 + chr21 43358346 43358421 chr21,43358346,43358421,-,LTR16A1,LTR,ERVL,-2,454,380,43358344,43358800 +6 - chr21 43358426 43358826 chr21,43358426,43358826,+,MLT1B,LTR,ERVL-MaLR,3,389,-1,43358424,43358827 -6 + chr21 43365590 43365625 chr21,43365590,43365625,+,GA-rich,Low_complexity,Low_complexity,1,35,0,43365590,43365625 +6 + chr21 43366136 43366480 chr21,43366136,43366480,+,L1MC1,LINE,L1,5945,6333,0,43360192,43366480 +6 + chr21 43448868 43448954 chr21,43448868,43448954,+,MLT1I,LTR,ERVL-MaLR,323,410,-1,43448546,43448955 +6 + chr21 43448958 43449061 chr21,43448958,43449061,+,MIRc,SINE,MIR,130,243,-25,43448829,43449086 +6 + chr21 43453094 43453310 chr21,43453094,43453310,-,L1ME3E,LINE,L1,-167,6075,5863,43452927,43459172 -6 - chr21 43453816 43453893 chr21,43453816,43453943,-,MER5C,DNA,hAT-Charlie,-64,249,121,43453752,43454063 -5 - chr21 43463389 43463489 chr21,43463389,43463492,+,L1MC2,LINE,L1,6230,6336,-8,43457160,43463500 -2 + chr21 43465309 43465347 chr21,43464971,43465522,+,L1MC5,LINE,L1,8714,9298,-6,43456258,43465528 +1 + chr21 43471306 43471318 chr21,43471306,43471424,+,Charlie4z,DNA,hAT-Charlie,49,167,0,43471258,43471424 -2 + chr21 43475925 43476039 chr21,43475917,43476199,+,L1MEf,LINE,L1,1740,2014,-4186,43474178,43480385 -5 + chr21 43805783 43805819 chr21,43805783,43805819,+,(TTTTGAG)n,Simple_repeat,Simple_repeat,1,39,0,43805783,43805819 -6 + chr21 43805856 43805909 chr21,43805856,43805909,+,FLAM_A,SINE,Alu,24,76,-66,43805833,43805975 -6 + chr21 43805915 43806042 chr21,43805915,43806042,-,L1MB8,LINE,L1,-15,6163,6030,43805900,43812071 +6 - chr21 43806134 43806432 chr21,43806134,43806432,-,L1MB8,LINE,L1,-299,5879,5558,43805835,43811989 +6 - chr21 43806964 43807024 chr21,43806942,43807024,-,L1MC4,LINE,L1,-265,7777,7689,43806677,43814712 +4 - chr21 43807031 43807179 chr21,43807031,43807179,-,L1MD3,LINE,L1,-1196,6799,6653,43805835,43813831 +6 - chr21 43811964 43812024 chr21,43811964,43812024,+,MIR3,SINE,MIR,90,150,-58,43811875,43812082 -6 + chr21 43812555 43812567 chr21,43812555,43812615,+,(CCTT)n,Simple_repeat,Simple_repeat,1,62,0,43812555,43812615 -1 + chr21 44159027 44159116 chr21,44159027,44159116,+,MIR3,SINE,MIR,47,158,-50,44158981,44159166 -6 + chr21 44175680 44175934 chr21,44175625,44175934,-,AluSz6,SINE,Alu,-1,311,1,44175624,44175934 -2 - chr21 44201290 44201381 chr21,44201240,44201381,-,FLAM_C,SINE,Alu,-8,135,3,44201232,44201383 -1 - chr21 44201381 44201571 chr21,44201381,44201571,-,MER65-int,LTR,ERV1,-2143,4496,4316,44199238,44205886 -6 - chr21 44201571 44201873 chr21,44201571,44201873,-,AluSq2,SINE,Alu,-16,297,1,44201555,44201873 -6 - chr21 44201873 44201957 chr21,44201873,44201992,-,MER65-int,LTR,ERV1,-2324,4315,4212,44199549,44206203 -4 - chr21 44206559 44206701 chr21,44206559,44206701,+,LTR37A,LTR,ERV1,284,426,0,44206276,44206701 -6 + chr21 44244545 44244608 chr21,44244444,44244608,-,MLT1D,LTR,ERVL-MaLR,-314,191,21,44244130,44244628 -1 - chr21 44244669 44244976 chr21,44244669,44244976,+,AluJo,SINE,Alu,1,303,-9,44244669,44244985 +6 + chr21 44251140 44251221 chr21,44251140,44251221,-,L2c,LINE,L2,-40,3347,3261,44251100,44254481 -6 - chr21 44251352 44251519 chr21,44251352,44251519,+,L1MA10,LINE,L1,6010,6334,0,44245343,44251519 +6 + chr21 44334591 44334744 chr21,44334591,44334744,-,MIR,SINE,MIR,-79,183,26,44334512,44334769 -6 - chr21 44340439 44340470 chr21,44340066,44340790,+,LTR8,LTR,ERV1,1,691,0,44340066,44340790 +5 + chr21 44347767 44348034 chr21,44347623,44348034,-,Tigger2a,DNA,TcMar-Tigger,-1,433,1,44347622,44348034 +5 - chr21 44348034 44348156 chr21,44348034,44348156,+,MER58B,DNA,hAT-Charlie,218,341,0,44347817,44348156 -6 + chr21 44414588 44414944 chr21,44414529,44415003,-,LTR45C,LTR,ERV1,0,539,2,44414529,44415004 +5 - chr21 44415221 44415652 chr21,44415221,44415652,+,MLT1D,LTR,ERVL-MaLR,1,505,0,44415221,44415652 -6 + chr21 44416538 44416675 chr21,44416538,44416675,+,L4_C_Mam,LINE,RTE-X,4801,4931,-207,44411738,44416882 -6 + chr21 44450997 44451142 chr21,44450997,44451142,+,L1MEc,LINE,L1,1898,2055,-4345,44449100,44455487 -6 + chr21 44451407 44451769 chr21,44451387,44451834,-,L1MC4a,LINE,L1,-127,7755,7241,44451260,44459074 +3 - chr21 44485577 44486157 chr21,44485339,44486157,+,LTR1A2,LTR,ERV1,1,837,0,44485339,44486157 +1 + chr21 44490031 44490230 chr21,44487935,44490230,+,HUERS-P2-int,LTR,ERV1,749,3088,0,44487187,44490230 +2 + chr21 44490230 44490288 chr21,44490230,44491111,+,LTR1A2,LTR,ERV1,1,837,0,44490230,44491111 +5 + chr21 44495307 44495453 chr21,44495307,44495453,+,MIR,SINE,MIR,8,150,-112,44495300,44495565 +6 + chr21 44507006 44507099 chr21,44507006,44507306,+,L1MB7,LINE,L1,5794,6116,-68,44501213,44507374 +4 + chr21 44508798 44508829 chr21,44508798,44508829,+,(TGGCAC)n,Simple_repeat,Simple_repeat,1,33,0,44508798,44508829 +6 + chr21 44509823 44509899 chr21,44509806,44509899,+,L2c,LINE,L2,3078,3170,-217,44506729,44510116 +2 + chr21 44515964 44516100 chr21,44515964,44516100,+,MIRc,SINE,MIR,12,151,-117,44515953,44516217 +6 + chr21 44518259 44518298 chr21,44518000,44518298,-,HAL1ME,LINE,L1,-1244,1221,890,44516756,44519187 -2 - chr21 44518713 44518823 chr21,44518713,44518823,-,L3,LINE,CR1,-346,3753,3637,44518367,44522459 -5 - chr21 44519017 44519330 chr21,44519017,44519330,-,AluYm1,SINE,Alu,-1,310,1,44519016,44519330 -6 - chr21 44519722 44519916 chr21,44519722,44519916,+,MIRb,SINE,MIR,38,259,-9,44519685,44519925 +6 + chr21 44803767 44803838 chr21,44803767,44803838,-,MLT1J,LTR,ERVL-MaLR,-8,504,436,44803759,44804273 -6 - chr21 44804487 44804584 chr21,44804487,44804584,+,AluJr,SINE,Alu,2,98,-214,44804486,44804798 +6 + chr21 44804612 44804717 chr21,44804612,44804768,+,MSTA,LTR,ERVL-MaLR,253,428,0,44804360,44804768 +5 + chr21 44922913 44922983 chr21,44922891,44923621,+,L1MC5,LINE,L1,8455,9302,-2,44914437,44923623 +3 + chr21 44928606 44928644 chr21,44928606,44928644,+,(GGGTC)n,Simple_repeat,Simple_repeat,1,39,0,44928606,44928644 +6 + chr21 44929534 44929678 chr21,44929534,44929720,-,MER58A,DNA,hAT-Charlie,-31,193,2,44929503,44929721 -5 - chr21 44929653 44929720 chr21,44929534,44929720,-,MER58A,DNA,hAT-Charlie,-31,193,2,44929503,44929721 +5 - chr21 44933960 44934094 chr21,44933960,44934094,-,MER5A,DNA,hAT-Charlie,-20,169,32,44933940,44934125 +6 - chr21 44934122 44934157 chr21,44934122,44934157,+,G-rich,Low_complexity,Low_complexity,1,35,0,44934122,44934157 -6 + chr21 44934907 44934949 chr21,44934907,44934949,+,(GGCA)n,Simple_repeat,Simple_repeat,1,42,0,44934907,44934949 -6 + chr21 44936723 44936954 chr21,44936723,44937186,+,MER34,LTR,ERV1,33,571,0,44936691,44937186 +5 + chr21 44937660 44937682 chr21,44937660,44938047,-,MSTD,LTR,ERVL-MaLR,0,396,1,44937660,44938047 +2 - chr21 44939593 44939708 chr21,44939419,44939708,+,AluJr,SINE,Alu,1,285,-27,44939419,44939735 -4 + chr21 44939892 44939913 chr21,44939892,44939933,+,(CCGCGAC)n,Simple_repeat,Simple_repeat,1,41,0,44939892,44939933 -1 + chr21 44978954 44979249 chr21,44978954,44979249,+,AluJr,SINE,Alu,1,303,-9,44978954,44979258 +6 + chr21 44989864 44989965 chr21,44989823,44989965,+,L1M5,LINE,L1,2965,3109,-3037,44986859,44993002 -5 + chr21 44990243 44990362 chr21,44990243,44990362,+,MIR,SINE,MIR,16,143,-119,44990228,44990481 -6 + chr21 44994478 44994519 chr21,44994478,44994519,+,(TG)n,Simple_repeat,Simple_repeat,1,42,0,44994478,44994519 -6 + chr21 45004444 45004509 chr21,45004415,45004509,-,L1MB7,LINE,L1,-1,6173,6082,45004414,45010590 +4 - chr21 45004605 45004727 chr21,45004605,45004930,-,L1MB7,LINE,L1,-246,5938,5619,45004359,45010548 +1 - chr21 45100985 45101023 chr21,45100985,45101023,+,(GCA)n,Simple_repeat,Simple_repeat,1,38,0,45100985,45101023 -6 + chr21 45243532 45243567 chr21,45243439,45243567,-,L1MEi,LINE,L1,-784,1428,1294,45242655,45244860 -2 - chr21 45243553 45243626 chr21,45243553,45243891,-,L1MEd,LINE,L1,-5795,1291,958,45237758,45244848 -4 - chr21 45289351 45289438 chr21,45289210,45290050,-,MER4D1,LTR,ERV1,0,900,1,45289210,45290050 -3 - chr21 45290591 45291025 chr21,45290591,45291025,+,L1M5,LINE,L1,5099,5588,-596,45285493,45291621 +6 + chr21 45291027 45291460 chr21,45291027,45291460,-,LTR42,LTR,ERVL,0,495,58,45291027,45291517 -6 - chr21 45296202 45296797 chr21,45295942,45296797,-,L1M5,LINE,L1,-1135,5011,4049,45294807,45300845 -2 - chr21 45296797 45297022 chr21,45296797,45297022,+,MER58A,DNA,hAT-Charlie,1,224,0,45296797,45297022 +6 + chr21 45297022 45297344 chr21,45297022,45297344,-,L1M5,LINE,L1,-2098,4048,3706,45294924,45301049 -6 - chr21 45304829 45305202 chr21,45304829,45305202,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,45304829,45305202 -6 + chr21 45593654 45593708 chr21,45593458,45593784,+,THE1A,LTR,ERVL-MaLR,1,355,0,45593458,45593784 +1 + chr21 45595573 45595607 chr21,45595457,45595607,-,L1MEg,LINE,L1,-6049,186,37,45589408,45595643 -2 - chr21 45596998 45597410 chr21,45596998,45597410,-,MSTA,LTR,ERVL-MaLR,0,428,1,45596998,45597410 -5 - chr21 45597421 45597730 chr21,45597421,45597730,-,AluY,SINE,Alu,0,311,1,45597421,45597730 -6 - chr21 45597736 45598027 chr21,45597736,45598027,-,AluSp,SINE,Alu,-21,292,1,45597715,45598027 -6 - chr21 45599785 45599932 chr21,45599785,45599932,+,AluSx,SINE,Alu,157,293,-19,45599629,45599951 +6 + chr21 45600159 45600527 chr21,45600159,45600527,+,MSTB1,LTR,ERVL-MaLR,1,394,-38,45600159,45600565 +6 + chr21 45600860 45601144 chr21,45600860,45601144,+,Tigger9a,DNA,TcMar-Tigger,150,460,-272,45600711,45601416 +6 + chr21 45601244 45601559 chr21,45601244,45601559,-,AluSz,SINE,Alu,0,312,2,45601244,45601560 -6 - chr21 45602173 45602264 chr21,45602173,45602264,+,L1M5,LINE,L1,5394,5484,-960,45596780,45603224 +6 + chr21 45602270 45602575 chr21,45602270,45602575,+,AluJr,SINE,Alu,1,303,-9,45602270,45602584 +6 + chr21 45602597 45603056 chr21,45602597,45604724,-,L1M2,LINE,L1,-3354,4208,2032,45599243,45606755 -5 - chr21 45759804 45760005 chr21,45759583,45760005,+,L1MEd,LINE,L1,1050,1494,-5592,45758534,45765597 -5 + chr21 45760005 45760067 chr21,45760005,45760067,+,MADE1,DNA,TcMar-Mariner,1,76,-4,45760005,45760071 -6 + chr21 45760067 45760167 chr21,45760067,45760167,+,L1MEd,LINE,L1,1495,1602,-5484,45758573,45765651 -6 + chr21 45760169 45760339 chr21,45760169,45760339,-,FAM,SINE,Alu,-14,171,1,45760155,45760339 +6 - chr21 45760341 45760617 chr21,45760341,45760617,+,L1MEd,LINE,L1,1596,1911,-5175,45758746,45765792 -6 + chr21 45760661 45760783 chr21,45760661,45760783,+,L1MEd,LINE,L1,2010,2130,-4956,45758652,45765739 -6 + chr21 45760803 45761091 chr21,45760803,45761091,+,AluSx1,SINE,Alu,1,297,-15,45760803,45761106 -6 + chr21 45761214 45761328 chr21,45761214,45761328,-,HAL1ME,LINE,L1,-1058,1407,1291,45760156,45762618 +6 - chr21 45762044 45762477 chr21,45762044,45762477,-,MLT1F1,LTR,ERVL-MaLR,-8,561,51,45762036,45762527 +6 - chr21 45762477 45762783 chr21,45762477,45762783,-,AluSx1,SINE,Alu,0,312,1,45762477,45762783 +6 - chr21 45762783 45762847 chr21,45762783,45762847,-,MLT1F1,LTR,ERVL-MaLR,-519,50,1,45762264,45762847 +6 - chr21 45827961 45828081 chr21,45827917,45828081,-,MLT1I,LTR,ERVL-MaLR,-16,395,206,45827901,45828286 +5 - chr21 45828229 45828452 chr21,45828229,45828452,-,MLT1I-int,LTR,ERVL-MaLR,-1,1386,1144,45828228,45829595 +6 - chr21 45872927 45873044 chr21,45872927,45873044,-,L1ME3Cz,LINE,L1,-562,435,313,45872365,45873356 -6 - chr21 45873221 45873345 chr21,45873221,45873477,-,L1M5,LINE,L1,-770,5376,5080,45872451,45878556 -5 - chr21 46039428 46039467 chr21,46039428,46039467,+,MER63D,DNA,hAT-Blackjack,53,88,-973,46039376,46040440 +6 + chr21 46039467 46039758 chr21,46039467,46039758,-,AluSx1,SINE,Alu,-16,296,3,46039451,46039760 -6 - chr21 46039758 46039807 chr21,46039758,46039830,+,MER63D,DNA,hAT-Blackjack,89,156,-905,46039670,46040735 +5 + chr21 46052596 46052631 chr21,46052477,46052631,+,MLT1A,LTR,ERVL-MaLR,230,374,0,46052248,46052631 +1 + chr21 46052799 46052854 chr21,46052735,46052854,-,L1ME3,LINE,L1,-11,6151,6031,46052724,46058884 -2 - chr21 46093675 46093752 chr21,46093675,46093752,+,MIR3,SINE,MIR,57,144,-86,46093619,46093838 -6 + chr21 46221763 46221806 chr21,46221646,46221806,-,L1M5,LINE,L1,-706,5418,5270,46220940,46227075 -2 - chr21 46230149 46230328 chr21,46230149,46230328,-,LTR79,LTR,ERVL,-34,493,313,46230115,46230640 -6 - chr21 46234851 46234988 chr21,46234851,46234988,+,L2c,LINE,L2,3251,3387,0,46231601,46234988 +6 + chr21 46236314 46236326 chr21,46236314,46236449,+,MIRb,SINE,MIR,3,139,-129,46236312,46236578 +4 + chr21 46241537 46241705 chr21,46241537,46241705,-,L1M5,LINE,L1,-1319,4827,4640,46240218,46246344 -6 - chr21 46242101 46242225 chr21,46242101,46242225,-,L1MD,LINE,L1,-1919,4227,4091,46240182,46246315 -6 - chr21 46242247 46242506 chr21,46242247,46242506,-,L1M5,LINE,L1,-2094,4052,3796,46240153,46246301 -6 - chr21 46242985 46242999 chr21,46242985,46243019,+,A-rich,Low_complexity,Low_complexity,1,34,0,46242985,46243019 +5 + chr21 46247123 46247231 chr21,46247123,46247255,-,FLAM_A,SINE,Alu,-12,130,1,46247111,46247255 -4 - chr21 46247635 46247652 chr21,46247373,46247652,-,AluSx1,SINE,Alu,0,312,5,46247373,46247656 -2 - chr21 46249710 46249797 chr21,46249710,46249797,-,MIR,SINE,MIR,-9,253,163,46249701,46249959 -6 - chr21 46249895 46249952 chr21,46249895,46249952,-,MIR,SINE,MIR,-147,115,59,46249748,46250010 -6 - chr21 46250169 46250342 chr21,46250169,46250342,+,HAL1,LINE,L1,2074,2261,-246,46248096,46250588 +6 + chr21 46250342 46250865 chr21,46250342,46250865,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,46250342,46250865 +6 + chr21 46250865 46250984 chr21,46250865,46250984,+,HAL1,LINE,L1,2262,2374,-133,46248604,46251117 +6 + chr21 46251692 46251716 chr21,46251692,46251716,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,46251692,46251716 -5 + chr21 46251878 46252121 chr21,46251878,46252165,-,AluJo,SINE,Alu,-5,307,2,46251873,46252166 +2 - chr21 46252430 46252699 chr21,46252408,46252699,+,AluSz6,SINE,Alu,2,298,-14,46252407,46252713 -4 + chr21 46252699 46252851 chr21,46252699,46252851,+,L1MB7,LINE,L1,6024,6184,0,46246676,46252851 -1 + chr21 46252861 46253148 chr21,46252861,46253148,+,AluJb,SINE,Alu,2,289,-23,46252860,46253171 -6 + chr21 46253400 46253655 chr21,46253400,46253655,+,MSTA,LTR,ERVL-MaLR,1,281,-147,46253400,46253802 -6 + chr21 46253681 46253762 chr21,46253681,46253762,+,MSTA,LTR,ERVL-MaLR,129,220,-208,46253553,46253970 -6 + chr21 46253742 46253819 chr21,46253742,46253819,+,MSTA,LTR,ERVL-MaLR,114,215,-213,46253629,46254032 -6 + chr21 46253861 46253939 chr21,46253861,46253939,+,THE1D,LTR,ERVL-MaLR,114,192,-183,46253748,46254122 -6 + chr21 46253917 46254133 chr21,46253917,46254182,+,MSTA,LTR,ERVL-MaLR,118,428,0,46253800,46254182 -1 + chr21 46259174 46259390 chr21,46259174,46259476,+,AluY,SINE,Alu,2,302,-9,46259173,46259485 +5 + chr21 46462471 46462522 chr21,46462381,46462563,+,MIRc,SINE,MIR,81,266,-2,46462301,46462565 +1 + chr21 46463076 46463110 chr21,46463076,46463110,+,(AGATGA)n,Simple_repeat,Simple_repeat,1,35,0,46463076,46463110 +6 + chr21 46463183 46463228 chr21,46463183,46463338,-,Chap1_Mam,DNA,hAT-Charlie,-142,200,30,46463041,46463367 -4 - chr21 46469146 46469242 chr21,46468928,46469242,+,L2c,LINE,L2,3090,3386,-1,46465839,46469243 +2 + chr22 15282557 15284543 chr22,15280559,15284543,+,L1PA3,LINE,L1,2161,6155,0,15278399,15284543 -5 + chr22 15284577 15284875 chr22,15284577,15284875,-,AluY,SINE,Alu,-13,298,1,15284564,15284875 +6 - chr22 15284875 15288198 chr22,15284875,15288198,+,HERVIP10F-int,LTR,ERV1,1771,5102,-2635,15283105,15290833 -6 + chr22 15288190 15288670 chr22,15288190,15290106,+,HERVIP10F-int,LTR,ERV1,5804,7730,-7,15282387,15290113 -1 + chr22 15298378 15298603 chr22,15298341,15298603,+,L1PB4,LINE,L1,5883,6144,-12,15292459,15298615 -5 + chr22 15298655 15298847 chr22,15298655,15298847,-,L1MB4,LINE,L1,-2,6178,5976,15298653,15304822 +6 - chr22 15298851 15298928 chr22,15298851,15298928,+,MER3,DNA,hAT-Charlie,133,209,0,15298719,15298928 -6 + chr22 15299014 15299425 chr22,15299014,15299425,+,L2a,LINE,L2,2766,3227,-199,15296249,15299624 -6 + chr22 15299441 15299599 chr22,15299441,15299599,-,AluJo,SINE,Alu,-22,290,133,15299419,15299731 +6 - chr22 15299599 15299776 chr22,15299599,15299776,+,L2a,LINE,L2,3223,3425,-1,15296377,15299777 -6 + chr22 15299888 15300385 chr22,15299888,15300385,-,L1P3,LINE,L1,-2353,3793,3304,15297535,15303688 +6 - chr22 15300385 15300670 chr22,15300385,15300670,-,AluSx4,SINE,Alu,-20,290,1,15300365,15300670 +6 - chr22 15300670 15301143 chr22,15300670,15301143,-,L1P3,LINE,L1,-2843,3303,2808,15297827,15303950 +6 - chr22 15301161 15301533 chr22,15301161,15301533,+,L1PA8,LINE,L1,5788,6159,-13,15295374,15301546 -6 + chr22 15301558 15302308 chr22,15301558,15302308,+,L1M5,LINE,L1,4496,5289,-857,15297063,15303165 -6 + chr22 15302345 15304556 chr22,15302345,15304982,+,L1PA5,LINE,L1,3507,6146,-8,15298839,15304990 -1 + chr22 15557577 15557728 chr22,15557437,15557728,-,L1PB,LINE,L1,-1825,4321,4024,15555612,15561751 +5 - chr22 15560525 15560694 chr22,15560487,15560871,+,L2c,LINE,L2,2932,3382,-5,15557556,15560876 -1 + chr22 15600908 15601072 chr22,15600893,15601072,+,MER92-int,LTR,ERV1,889,1065,-4153,15600005,15605225 -5 + chr22 15601072 15601377 chr22,15601072,15601377,+,AluSx,SINE,Alu,1,294,-18,15601072,15601395 -6 + chr22 15601377 15601563 chr22,15601377,15601563,+,MER92-int,LTR,ERV1,1066,1260,-3958,15600312,15605521 -6 + chr22 15601563 15601595 chr22,15601563,15601595,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,15601563,15601595 -6 + chr22 15601601 15601735 chr22,15601601,15601735,-,FLAM_C,SINE,Alu,-10,133,1,15601591,15601735 +6 - chr22 15604842 15604882 chr22,15604800,15604932,+,MIRb,SINE,MIR,97,236,-32,15604704,15604964 -1 + chr22 15699407 15699610 chr22,15699407,15699610,+,MIRb,SINE,MIR,13,234,-34,15699395,15699644 -6 + chr22 15700487 15700760 chr22,15700487,15700760,-,MamGypLTR3a,LTR,Gypsy,-26,955,692,15700461,15701451 +6 - chr22 15701458 15701482 chr22,15701458,15701564,+,U6,snRNA,snRNA,1,106,-1,15701458,15701565 -2 + chr22 15702960 15703314 chr22,15702793,15703314,-,MER1A,DNA,hAT-Charlie,-6,523,1,15702787,15703314 +4 - chr22 15703379 15703403 chr22,15703379,15703526,-,Zaphod2,DNA,hAT-Tip100,-3217,307,155,15700162,15703680 +1 - chr22 15754388 15754453 chr22,15754207,15754720,-,L1ME1,LINE,L1,-29,6150,5629,15754178,15760348 -3 - chr22 15787172 15787282 chr22,15786766,15787300,-,L1MA6,LINE,L1,-16,6284,5727,15786750,15793026 -3 - chr22 15788552 15788699 chr22,15788393,15789294,-,L1MA6,LINE,L1,-9,6291,5394,15788384,15794687 -3 - chr22 15788820 15788931 chr22,15788393,15789294,-,L1MA6,LINE,L1,-9,6291,5394,15788384,15794687 -3 - chr22 15790661 15790798 chr22,15790241,15790994,-,L1MA6,LINE,L1,-5,6295,5562,15790236,15796555 -1 - chr22 15791010 15791152 chr22,15790994,15791287,-,AluY,SINE,Alu,-16,295,2,15790978,15791288 -3 - chr22 15815513 15815566 chr22,15815513,15815680,+,PABL_B,LTR,ERV1,288,460,-207,15815226,15815887 +4 + chr22 15819027 15819076 chr22,15819027,15819076,+,(CA)n,Simple_repeat,Simple_repeat,1,49,0,15819027,15819076 +6 + chr22 15819152 15819165 chr22,15819152,15819228,+,(GT)n,Simple_repeat,Simple_repeat,1,76,0,15819152,15819228 +5 + chr22 15826388 15826522 chr22,15826388,15826522,+,L1ME2z,LINE,L1,6053,6176,-268,15820336,15826790 +6 + chr22 15827312 15827445 chr22,15827312,15827445,+,AluJo,SINE,Alu,1,132,-180,15827312,15827625 +5 + chr22 15827639 15827701 chr22,15827639,15827701,+,MER41B,LTR,ERV1,485,546,-88,15827155,15827789 +6 + chr22 15827713 15828043 chr22,15827713,15828043,+,L1MC4,LINE,L1,7242,7566,-476,15820472,15828519 +6 + chr22 15828062 15828334 chr22,15828062,15828334,+,AluJr,SINE,Alu,42,310,-2,15828021,15828336 +6 + chr22 15828411 15828527 chr22,15828411,15828527,-,Tigger1,DNA,TcMar-Tigger,0,2418,2310,15828411,15830836 -6 - chr22 15828527 15828658 chr22,15828527,15828658,+,FLAM_C,SINE,Alu,1,128,-15,15828527,15828673 +6 + chr22 15828658 15828735 chr22,15828658,15828735,-,Tigger1,DNA,TcMar-Tigger,-109,2309,2246,15828549,15830980 -6 - chr22 15828735 15828867 chr22,15828735,15828867,+,FLAM_C,SINE,Alu,1,133,-10,15828735,15828877 +6 + chr22 15828867 15829349 chr22,15828867,15829349,-,Tigger1,DNA,TcMar-Tigger,-173,2245,1824,15828694,15831172 -6 - chr22 15829595 15829856 chr22,15829595,15829856,+,L1ME2z,LINE,L1,6153,6441,-3,15823443,15829859 +6 + chr22 15914721 15915006 chr22,15914720,15915006,-,AluJo,SINE,Alu,-20,292,1,15914700,15915006 +5 - chr22 16525954 16526113 chr22,16525954,16526428,+,REP522,Satellite,telo,1155,1669,-148,16524800,16526576 +4 + chr22 16526975 16527184 chr22,16526969,16527184,+,REP522,Satellite,telo,1023,1272,-545,16525947,16527729 +2 + chr22 16527226 16527237 chr22,16527226,16529955,+,(TGGCCC)n,Simple_repeat,Simple_repeat,1,2903,0,16527226,16529955 +5 + chr22 16601985 16602013 chr22,16601985,16602013,+,(GCG)n,Simple_repeat,Simple_repeat,1,28,0,16601985,16602013 +6 + chr22 16611658 16611747 chr22,16611307,16611747,+,LTR7Y,LTR,ERV1,1,472,0,16611307,16611747 +2 + chr22 16611747 16611893 chr22,16611747,16614708,+,HERVH-int,LTR,ERV1,1,2484,-5229,16611747,16619937 +1 + chr22 16612582 16614708 chr22,16611747,16614708,+,HERVH-int,LTR,ERV1,1,2484,-5229,16611747,16619937 +1 + chr22 16614708 16615111 chr22,16614708,16615149,+,LTR7Y,LTR,ERV1,1,472,0,16614708,16615149 +5 + chr22 16638792 16638980 chr22,16638792,16639064,+,AluSg,SINE,Alu,33,304,-6,16638760,16639070 +5 + chr22 16639298 16640737 chr22,16639082,16641330,+,L1M1,LINE,L1,1252,3554,-4011,16637831,16645341 +5 + chr22 16648527 16648805 chr22,16648504,16648805,-,AluSz,SINE,Alu,-11,301,1,16648493,16648805 -2 - chr22 16649026 16649063 chr22,16649026,16649063,+,G-rich,Low_complexity,Low_complexity,1,39,0,16649026,16649063 +6 + chr22 16650245 16650574 chr22,16650245,16650574,-,Tigger3a,DNA,TcMar-Tigger,-7,341,1,16650238,16650574 -6 - chr22 16651288 16651902 chr22,16651288,16651902,-,LTR14B,LTR,ERVK,0,608,17,16651288,16651918 -6 - chr22 16651997 16652162 chr22,16651997,16652162,-,MER5A1,DNA,hAT-Charlie,0,189,8,16651997,16652169 -6 - chr22 16652197 16652279 chr22,16652197,16652279,-,MER5A,DNA,hAT-Charlie,-31,158,78,16652166,16652356 -6 - chr22 16652422 16652942 chr22,16652422,16652942,-,LTR22C0,LTR,ERVK,0,502,1,16652422,16652942 -6 - chr22 16653075 16653360 chr22,16653075,16653360,+,AluJr,SINE,Alu,1,285,-27,16653075,16653387 +6 + chr22 16653368 16653684 chr22,16653368,16653684,+,AluSq2,SINE,Alu,1,313,0,16653368,16653684 +6 + chr22 16661476 16661555 chr22,16660386,16666498,+,L1PA4,LINE,L1,1,6141,-14,16660386,16666512 -3 + chr22 16669462 16669620 chr22,16668770,16669757,+,L1M4,LINE,L1,3841,4828,-1318,16664930,16671075 -5 + chr22 16675123 16675168 chr22,16675102,16675168,+,(TTCTTT)n,Simple_repeat,Simple_repeat,1,67,0,16675102,16675168 -4 + chr22 16747018 16747255 chr22,16747018,16747255,+,L3,LINE,CR1,3575,3835,-264,16743444,16747519 -6 + chr22 16748276 16748645 chr22,16748129,16748787,-,SST1,Satellite,centr,-7,1556,861,16748122,16749647 +1 - chr22 16871077 16871126 chr22,16871077,16871198,-,L2b,LINE,L2,-6,3369,3237,16871071,16874434 -5 - chr22 16950086 16950511 chr22,16949917,16950511,+,L1PA16,LINE,L1,4411,4965,-1181,16945507,16951692 -5 + chr22 16950511 16951061 chr22,16950511,16951061,-,MLT2A2,LTR,ERVL,0,554,1,16950511,16951061 +6 - chr22 16951061 16952176 chr22,16951061,16952176,+,L1PA16,LINE,L1,4961,6164,-2,16946101,16952178 -6 + chr22 16952200 16952302 chr22,16952200,16952302,-,Charlie16a,DNA,hAT-Charlie,-188,154,46,16952012,16952347 +6 - chr22 16952634 16952657 chr22,16952634,16952657,+,(TC)n,Simple_repeat,Simple_repeat,1,23,0,16952634,16952657 -6 + chr22 16952658 16952678 chr22,16952658,16952678,+,(TG)n,Simple_repeat,Simple_repeat,1,20,0,16952658,16952678 -6 + chr22 16952678 16952707 chr22,16952678,16952707,+,(TCTG)n,Simple_repeat,Simple_repeat,2,73,0,16952677,16952707 -6 + chr22 16953358 16953522 chr22,16953358,16953522,-,MIR3,SINE,MIR,-2,206,45,16953356,16953566 +6 - chr22 16953584 16953667 chr22,16953584,16953667,+,MIRb,SINE,MIR,63,155,-113,16953522,16953780 -6 + chr22 16954566 16954637 chr22,16954566,16954637,+,MIR3,SINE,MIR,84,170,-38,16954483,16954675 -6 + chr22 16954649 16954848 chr22,16954649,16954848,-,MER5C1,DNA,hAT-Charlie,-2,261,57,16954647,16954904 +6 - chr22 16955513 16955575 chr22,16955513,16955575,-,MIR3,SINE,MIR,-13,195,133,16955500,16955707 +6 - chr22 16956153 16956212 chr22,16956153,16956212,-,L2b,LINE,L2,-24,3351,3291,16956129,16959502 +6 - chr22 16956942 16956969 chr22,16956942,16956969,+,(ATTC)n,Simple_repeat,Simple_repeat,1,27,0,16956942,16956969 -6 + chr22 16957153 16957233 chr22,16957153,16957233,+,MamRep1894,DNA,hAT,2,83,-40,16957152,16957273 -6 + chr22 16958915 16959238 chr22,16958915,16959238,+,AluYb8,SINE,Alu,1,316,-2,16958915,16959240 -6 + chr22 16959886 16959956 chr22,16959886,16959956,-,MIR3,SINE,MIR,-29,179,107,16959857,16960062 +6 - chr22 16960731 16961054 chr22,16960731,16961054,+,L2b,LINE,L2,3022,3334,-41,16957710,16961095 -6 + chr22 16961864 16961908 chr22,16961864,16961908,+,(CTCC)n,Simple_repeat,Simple_repeat,1,46,0,16961864,16961908 -6 + chr22 16964992 16965028 chr22,16964992,16965028,-,MIRc,SINE,MIR,-103,165,130,16964889,16965157 +6 - chr22 16965492 16965542 chr22,16965492,16965542,-,MER94B,DNA,hAT-Blackjack,0,133,84,16965492,16965625 +6 - chr22 16965871 16966015 chr22,16965871,16966015,-,MIRb,SINE,MIR,-16,252,90,16965855,16966104 +6 - chr22 16966636 16966981 chr22,16966636,16966981,-,MER54B,LTR,ERVL,-444,349,1,16966192,16966981 +6 - chr22 16970280 16970477 chr22,16970280,16970477,+,MIRb,SINE,MIR,8,208,0,16970273,16970477 -6 + chr22 16970914 16971206 chr22,16970914,16971206,+,AluJb,SINE,Alu,2,295,-17,16970913,16971223 -6 + chr22 16971574 16971726 chr22,16971574,16971726,-,Charlie4z,DNA,hAT-Charlie,0,167,21,16971574,16971746 +6 - chr22 16972578 16972684 chr22,16972578,16972684,+,L2b,LINE,L2,2447,2568,-851,16970132,16973535 -6 + chr22 16972911 16973345 chr22,16972911,16973345,+,L2b,LINE,L2,2930,3373,-2,16969982,16973347 -6 + chr22 16973841 16973874 chr22,16973841,16973874,+,(CTGTGT)n,Simple_repeat,Simple_repeat,1,33,0,16973841,16973874 -6 + chr22 16974293 16974387 chr22,16974293,16974387,-,MIRb,SINE,MIR,-40,228,132,16974253,16974518 +6 - chr22 16974710 16981169 chr22,16974710,16981169,+,L1PA7,LINE,L1,1,6469,0,16974710,16981169 -6 + chr22 16981202 16982751 chr22,16981202,16982751,+,L1M2,LINE,L1,3051,4585,-1558,16978152,16984309 -6 + chr22 16982751 16983376 chr22,16982751,16983376,+,LTR14B,LTR,ERVK,3,608,0,16982749,16983376 -6 + chr22 16983376 16984459 chr22,16983376,16984459,+,L1M2,LINE,L1,4586,5653,-647,16978791,16985106 -6 + chr22 16984455 16985147 chr22,16984455,16985147,-,L1MEf,LINE,L1,-5452,748,2,16979003,16985148 +6 - chr22 16985239 16985392 chr22,16985239,16985392,-,L1M4a1,LINE,L1,-1466,1113,949,16983773,16986340 +6 - chr22 16985427 16985562 chr22,16985427,16985562,-,L1MEb,LINE,L1,-5906,164,10,16979521,16985571 +6 - chr22 16986170 16986330 chr22,16986170,16986330,+,MER5A1,DNA,hAT-Charlie,1,164,-2,16986170,16986332 -6 + chr22 16986450 16986670 chr22,16986450,16986670,-,MIRb,SINE,MIR,-30,238,3,16986420,16986672 +6 - chr22 16986673 16986799 chr22,16986673,16986799,+,MIR3,SINE,MIR,30,156,-52,16986644,16986851 -6 + chr22 16986920 16987097 chr22,16986920,16987097,+,MIRc,SINE,MIR,5,216,-52,16986916,16987149 -6 + chr22 16987394 16987563 chr22,16987394,16987563,+,MER3,DNA,hAT-Charlie,17,209,0,16987378,16987563 -6 + chr22 16988764 16989019 chr22,16988764,16989019,+,L2c,LINE,L2,2933,3226,-161,16985832,16989180 -6 + chr22 16990316 16990414 chr22,16990316,16990414,+,L2c,LINE,L2,3263,3408,-18,16987054,16990432 -6 + chr22 16990790 16990866 chr22,16990790,16990866,-,MER5A,DNA,hAT-Charlie,-31,158,80,16990759,16990945 +6 - chr22 16990909 16990966 chr22,16990909,16990966,-,MER5A,DNA,hAT-Charlie,-112,77,21,16990797,16990986 +6 - chr22 16990955 16991058 chr22,16990955,16991058,+,MER58C,DNA,hAT-Charlie,65,178,-37,16990891,16991095 -6 + chr22 16991148 16991282 chr22,16991148,16991282,-,MER5B,DNA,hAT-Charlie,-40,138,7,16991108,16991288 +6 - chr22 16992480 16992666 chr22,16992480,16992666,-,MIR1_Amn,SINE,MIR,-22,208,6,16992458,16992671 +6 - chr22 16992725 16992997 chr22,16992725,16992997,-,AluJr,SINE,Alu,-21,291,29,16992704,16993025 +6 - chr22 16993000 16993047 chr22,16993000,16993047,+,L2a,LINE,L2,3332,3378,-48,16989669,16993095 -6 + chr22 16993206 16993415 chr22,16993206,16993415,+,MIRc,SINE,MIR,48,266,-2,16993159,16993417 -6 + chr22 16993414 16994307 chr22,16993414,16994307,+,L2,LINE,L2,1026,2069,-1350,16992389,16995657 -6 + chr22 16994616 16995099 chr22,16994616,16995099,-,L1M5,LINE,L1,-1828,4318,3786,16992788,16998884 +6 - chr22 16995099 16995172 chr22,16995099,16995172,-,MIR,SINE,MIR,-191,71,4,16994908,16995175 +6 - chr22 16995394 16996664 chr22,16995394,16996664,+,L1P2,LINE,L1,584,1858,-4326,16994811,17000990 -6 + chr22 16996662 17000000 chr22,16996662,17000000,-,L1PA5,LINE,L1,-1,6153,2792,16996661,17002791 +6 - chr22 17000000 17001747 chr22,17000000,17001747,-,L1P2,LINE,L1,-3355,2791,1056,16996645,17002802 +6 - chr22 17001736 17002278 chr22,17001736,17002278,-,L1P2,LINE,L1,-5627,557,4,16996109,17002281 +6 - chr22 17002285 17002592 chr22,17002285,17002592,+,L1P2,LINE,L1,1847,2158,-4026,17000439,17006618 -6 + chr22 17002592 17002835 chr22,17002592,17002835,+,L1PA4,LINE,L1,5906,6152,-3,16996687,17002838 -6 + chr22 17002835 17004712 chr22,17002835,17004712,+,L1P2,LINE,L1,2143,4030,-2116,17000693,17006828 -6 + chr22 17004704 17007020 chr22,17004704,17007020,+,L1PA7,LINE,L1,3842,6153,-1,17000863,17007021 -6 + chr22 17008305 17008366 chr22,17008305,17008366,+,(GGTTCC)n,Simple_repeat,Simple_repeat,1,61,0,17008305,17008366 -6 + chr22 17010980 17011427 chr22,17010980,17011427,+,LTR56,LTR,ERV1,9,445,0,17010972,17011427 -6 + chr22 17013576 17014122 chr22,17013576,17014122,+,L1MB3,LINE,L1,5615,6183,0,17007962,17014122 -6 + chr22 17014168 17014457 chr22,17014168,17014457,+,L2a,LINE,L2,2949,3257,-169,17011220,17014626 -6 + chr22 17014915 17015204 chr22,17014915,17015204,-,AluJb,SINE,Alu,-14,298,21,17014901,17015224 +6 - chr22 17015843 17016724 chr22,17015843,17016724,+,L1MA2,LINE,L1,3410,4329,-1817,17012434,17018541 -6 + chr22 17016724 17017005 chr22,17016724,17017005,-,AluYh3,SINE,Alu,-15,296,2,17016709,17017006 +6 - chr22 17017005 17018946 chr22,17017005,17018946,+,L1MA2,LINE,L1,4324,6304,0,17012682,17018946 -6 + chr22 17019148 17019284 chr22,17019148,17019284,-,MER4B-int,LTR,ERV1,-6380,1890,1754,17012768,17021037 +6 - chr22 17019559 17020068 chr22,17019559,17020068,-,MER4B-int,LTR,ERV1,-6359,1254,582,17013200,17020649 +6 - chr22 17020068 17020959 chr22,17020068,17020959,+,L1MA6,LINE,L1,5412,6299,-1,17014657,17020960 -6 + chr22 17022043 17022346 chr22,17022043,17022346,+,AluY,SINE,Alu,1,300,-11,17022043,17022357 -6 + chr22 17022683 17022731 chr22,17022683,17022731,+,(ATT)n,Simple_repeat,Simple_repeat,1,49,0,17022683,17022731 -6 + chr22 17022789 17022834 chr22,17022789,17022834,+,(TA)n,Simple_repeat,Simple_repeat,1,47,0,17022789,17022834 -6 + chr22 17023121 17023310 chr22,17023121,17023310,-,MLT1D,LTR,ERVL-MaLR,-335,170,4,17022786,17023313 +6 - chr22 17024132 17030285 chr22,17024132,17030285,+,L1PA4,LINE,L1,182,6326,-2,17023951,17030287 -6 + chr22 17030307 17030383 chr22,17030307,17030383,-,L1P4a,LINE,L1,-3540,2943,2878,17026767,17033260 +6 - chr22 17030383 17030491 chr22,17030383,17030491,-,L1PA4,LINE,L1,-2,6153,6046,17030381,17036536 +6 - chr22 17030491 17031458 chr22,17030491,17031458,-,L1P4a,LINE,L1,-3606,2877,1886,17026885,17033343 +6 - chr22 17031458 17031752 chr22,17031458,17031752,-,AluSx,SINE,Alu,-16,296,1,17031442,17031752 +6 - chr22 17033018 17033301 chr22,17033018,17033301,-,L2,LINE,L2,-340,3079,2745,17032678,17036045 +6 - chr22 17033679 17033787 chr22,17033679,17033787,+,L2b,LINE,L2,3018,3128,-259,17030662,17034046 -6 + chr22 17033787 17034044 chr22,17033787,17034044,+,AluJb,SINE,Alu,1,268,-44,17033787,17034088 -6 + chr22 17034044 17034094 chr22,17034044,17034094,+,L2b,LINE,L2,3126,3155,-220,17030919,17034314 -6 + chr22 17056509 17056558 chr22,17056509,17056656,-,MER58B,DNA,hAT-Charlie,0,341,181,17056509,17056836 -5 - chr22 17057073 17057255 chr22,17056996,17057255,+,L2c,LINE,L2,3063,3310,-77,17053934,17057332 +2 + chr22 17057461 17057906 chr22,17057461,17057906,+,L2c,LINE,L2,2462,2927,-492,17055000,17058398 +6 + chr22 17057984 17058262 chr22,17057984,17058262,+,L2c,LINE,L2,3057,3346,-41,17054928,17058303 +6 + chr22 17058895 17059133 chr22,17058895,17059133,-,MER2,DNA,TcMar-Tigger,-2,343,95,17058893,17059227 -6 - chr22 17059133 17060003 chr22,17059133,17060168,+,LTR5A,LTR,ERVK,2,1033,0,17059132,17060168 +5 + chr22 17067821 17067841 chr22,17067549,17067841,-,AluSz,SINE,Alu,-5,307,10,17067544,17067850 -1 - chr22 17067841 17068101 chr22,17067841,17068101,+,Tigger3a,DNA,TcMar-Tigger,82,346,-2,17067760,17068103 +6 + chr22 17068103 17068215 chr22,17068103,17068215,+,MIRb,SINE,MIR,108,253,-15,17067996,17068230 +6 + chr22 17068696 17068872 chr22,17068696,17068872,+,L2b,LINE,L2,2942,3155,-232,17065755,17069104 +6 + chr22 17068934 17068956 chr22,17068934,17068956,+,(AATT)n,Simple_repeat,Simple_repeat,1,22,0,17068934,17068956 +6 + chr22 17068956 17069195 chr22,17068956,17069195,-,AluSx,SINE,Alu,-14,298,1,17068942,17069195 -6 - chr22 17069968 17070323 chr22,17069968,17070323,-,MSTB,LTR,ERVL-MaLR,-64,362,1,17069904,17070323 -6 - chr22 17070323 17070675 chr22,17070323,17071176,-,L1M3f,LINE,L1,-1698,5864,4995,17068625,17076170 -5 - chr22 17081023 17081176 chr22,17081023,17081176,+,MER5B,DNA,hAT-Charlie,18,175,-3,17081006,17081179 +6 + chr22 17081186 17081259 chr22,17081186,17081259,+,Charlie2b,DNA,hAT-Charlie,9,86,-2696,17081178,17083955 +6 + chr22 17081265 17081456 chr22,17081265,17081593,+,MER58B,DNA,hAT-Charlie,7,338,-3,17081259,17081596 +5 + chr22 17124655 17124716 chr22,17124410,17124716,-,MER44A,DNA,TcMar-Tigger,-1,338,1,17124409,17124716 -2 - chr22 17124716 17124771 chr22,17124716,17125201,+,L1MEd,LINE,L1,964,1469,-5634,17123753,17130835 +4 + chr22 17130362 17130440 chr22,17130170,17130440,+,MLT1J2,LTR,ERVL-MaLR,6,315,-129,17130165,17130569 +2 + chr22 17165357 17165445 chr22,17165357,17165491,+,LTR79,LTR,ERVL,347,490,-37,17165011,17165528 +5 + chr22 17257008 17257106 chr22,17257008,17257106,-,MIR3,SINE,MIR,-166,102,6,17256842,17257111 +6 - chr22 17260883 17261045 chr22,17260883,17261045,-,MER20,DNA,hAT-Charlie,0,219,59,17260883,17261103 +2 - chr22 17329034 17329232 chr22,17328967,17329338,+,MamRTE1,LINE,RTE-BovB,3180,3583,-229,17325788,17329567 +5 + chr22 17582251 17582372 chr22,17582090,17582383,+,AluY,SINE,Alu,1,289,-22,17582090,17582405 -3 + chr22 17585265 17585386 chr22,17585109,17585413,+,AluSx,SINE,Alu,2,306,-6,17585108,17585419 -3 + chr22 17588364 17588672 chr22,17588364,17588672,+,AluSx1,SINE,Alu,1,305,-7,17588364,17588679 -6 + chr22 17588788 17589077 chr22,17588788,17589077,+,AluJr,SINE,Alu,1,298,-14,17588788,17589091 -6 + chr22 17589173 17589192 chr22,17589173,17589475,-,AluSg,SINE,Alu,-5,305,1,17589168,17589475 +1 - chr22 17777408 17777764 chr22,17777408,17777764,+,MLT1B,LTR,ERVL-MaLR,1,384,-6,17777408,17777770 +6 + chr22 17779062 17779197 chr22,17779062,17779197,-,L1ME3Cz,LINE,L1,-684,5510,5387,17778378,17784583 -6 - chr22 17779197 17779478 chr22,17779197,17779478,+,AluJb,SINE,Alu,37,312,0,17779161,17779478 +6 + chr22 17808891 17808931 chr22,17808891,17808931,+,(GCTGCC)n,Simple_repeat,Simple_repeat,1,41,0,17808891,17808931 -6 + chr22 18004270 18004560 chr22,18004255,18004560,-,AluSp,SINE,Alu,-1,312,1,18004254,18004560 +5 - chr22 18004622 18004804 chr22,18004622,18004804,-,MIRb,SINE,MIR,-8,260,88,18004614,18004891 +6 - chr22 18004922 18005234 chr22,18004922,18005234,-,AluSx,SINE,Alu,-1,311,1,18004921,18005234 +6 - chr22 18005237 18005410 chr22,18005237,18005410,-,MIRc,SINE,MIR,-16,252,64,18005221,18005473 +6 - chr22 18006126 18006175 chr22,18006126,18006175,-,L2c,LINE,L2,-1,3386,3335,18006125,18009509 +6 - chr22 18006551 18006615 chr22,18006551,18006852,+,AluSp,SINE,Alu,1,302,-11,18006551,18006863 -2 + chr22 18007162 18007308 chr22,18007157,18007379,-,L1ME4a,LINE,L1,-5,6119,5886,18007152,18013264 +1 - chr22 18029385 18029554 chr22,18029082,18029800,+,L3,LINE,CR1,3300,4096,-3,18025783,18029803 +1 + chr22 18036858 18036997 chr22,18036858,18036997,-,MIR3,SINE,MIR,-28,180,30,18036830,18037026 -6 - chr22 18037006 18037196 chr22,18037006,18037196,+,L2,LINE,L2,2498,2715,-704,18034509,18037900 +6 + chr22 18037219 18037528 chr22,18037219,18037528,-,AluSx,SINE,Alu,-2,310,2,18037217,18037529 -6 - chr22 18037565 18037602 chr22,18037565,18037602,-,L1M1,LINE,L1,-494,5809,5773,18037071,18043374 -6 - chr22 18037568 18037608 chr22,18037568,18037608,-,L1M3,LINE,L1,-377,5806,5767,18037191,18043374 -6 - chr22 18037658 18037902 chr22,18037658,18037902,+,L1ME4b,LINE,L1,599,845,-47,18037060,18037949 +6 + chr22 18076527 18076563 chr22,18076334,18076563,-,MIRc,SINE,MIR,-14,254,12,18076320,18076574 +5 - chr22 18077186 18077330 chr22,18077091,18077330,-,L2a,LINE,L2,-1,3425,3174,18077090,18080503 +5 - chr22 18112067 18112215 chr22,18112067,18112215,+,MIR3,SINE,MIR,18,175,-33,18112050,18112248 -6 + chr22 18112227 18112398 chr22,18112227,18112398,-,L1MC5,LINE,L1,0,9304,9117,18112227,18121514 +6 - chr22 18113217 18113307 chr22,18113217,18113307,-,MIRb,SINE,MIR,-165,103,6,18113052,18113312 +6 - chr22 18114889 18115035 chr22,18114889,18115035,+,L3b,LINE,CR1,4929,5093,-139,18109961,18115174 -6 + chr22 18115456 18115732 chr22,18115456,18115732,-,L2c,LINE,L2,-20,3367,3090,18115436,18118821 +6 - chr22 18116368 18116556 chr22,18116368,18116556,+,MIR3,SINE,MIR,9,190,-18,18116360,18116574 -6 + chr22 18117092 18117491 chr22,18117092,18117491,-,L1MC5a,LINE,L1,-5,2772,2303,18117087,18119793 +6 - chr22 18117491 18117802 chr22,18117491,18117802,+,AluY,SINE,Alu,1,309,-2,18117491,18117804 -6 + chr22 18117802 18118318 chr22,18117802,18118318,-,L1MC5a,LINE,L1,-475,2302,1830,18117327,18120147 +6 - chr22 18118335 18118605 chr22,18118335,18118605,-,L1MC5a,LINE,L1,-1065,1712,1429,18117270,18120033 +6 - chr22 18119447 18119534 chr22,18119447,18119534,-,MIRc,SINE,MIR,-119,149,54,18119328,18119587 +6 - chr22 18120081 18120100 chr22,18120081,18120100,+,(CA)n,Simple_repeat,Simple_repeat,1,19,0,18120081,18120100 -6 + chr22 18120120 18120738 chr22,18120120,18120738,-,L1PA16,LINE,L1,0,6166,5539,18120120,18126276 +6 - chr22 18122828 18123138 chr22,18122828,18123138,+,AluY,SINE,Alu,1,310,-1,18122828,18123139 -6 + chr22 18123242 18123554 chr22,18123242,18123554,-,AluY,SINE,Alu,0,311,1,18123242,18123554 +6 - chr22 18123562 18123873 chr22,18123562,18123873,-,AluSx,SINE,Alu,-5,307,2,18123557,18123874 +6 - chr22 18124662 18124862 chr22,18124662,18124862,-,MIRb,SINE,MIR,-20,248,31,18124642,18124892 +6 - chr22 18124805 18124951 chr22,18124805,18124951,+,MIR3,SINE,MIR,27,179,-29,18124779,18124980 -6 + chr22 18125105 18125233 chr22,18125105,18125233,-,MIRb,SINE,MIR,-6,262,126,18125099,18125358 +6 - chr22 18125233 18125543 chr22,18125233,18125543,+,AluSc,SINE,Alu,1,309,0,18125233,18125543 -6 + chr22 18125543 18125628 chr22,18125543,18125628,-,MIRb,SINE,MIR,-143,125,40,18125400,18125667 +6 - chr22 18125879 18126163 chr22,18125879,18126163,-,AluJr,SINE,Alu,-30,282,1,18125849,18126163 +6 - chr22 18127389 18127690 chr22,18127389,18127690,-,AluY,SINE,Alu,-8,303,3,18127381,18127692 +6 - chr22 18127692 18127984 chr22,18127692,18127984,-,AluY,SINE,Alu,-7,304,1,18127685,18127984 +6 - chr22 18128530 18128846 chr22,18128530,18128846,-,AluSx,SINE,Alu,0,312,1,18128530,18128846 +6 - chr22 18128858 18128936 chr22,18128858,18128936,-,L2b,LINE,L2,-1,3374,3294,18128857,18132229 +6 - chr22 18130417 18130641 chr22,18130417,18130641,-,AluJr,SINE,Alu,-7,305,86,18130410,18130726 +6 - chr22 18178222 18178389 chr22,18178222,18178389,-,MLT1C,LTR,ERVL-MaLR,-54,413,251,18178168,18178639 +6 - chr22 18205775 18205915 chr22,18205564,18206131,-,HSATI,Satellite,Satellite,-10,567,1,18205554,18206131 +1 - chr22 18361966 18362181 chr22,18361966,18362181,-,MLT1C,LTR,ERVL-MaLR,-54,413,251,18361912,18362431 +6 - chr22 18369135 18369409 chr22,18369135,18369409,-,L1PA2,LINE,L1,0,6155,5879,18369135,18375287 +6 - chr22 18386386 18386597 chr22,18386175,18386741,-,HSATI,Satellite,Satellite,-10,567,1,18386165,18386741 +1 - chr22 18389937 18389967 chr22,18389937,18390104,-,MIR,SINE,MIR,-72,196,40,18389865,18390143 +2 - chr22 18487869 18488227 chr22,18487253,18488227,-,L1MB4,LINE,L1,0,6180,5207,18487253,18493433 +5 - chr22 18500231 18500398 chr22,18500231,18500398,+,MLT1C,LTR,ERVL-MaLR,251,413,-54,18499981,18500452 +6 + chr22 18733914 18734054 chr22,18733698,18734264,+,HSATI,Satellite,Satellite,1,567,-10,18733698,18734274 +1 + chr22 18756583 18756873 chr22,18756583,18756873,+,L1ME4c,LINE,L1,259,570,-260,18756325,18757133 +6 + chr22 18757542 18757709 chr22,18757542,18757709,+,MLT1C,LTR,ERVL-MaLR,251,413,-54,18757292,18757763 +6 + chr22 18883762 18883873 chr22,18883762,18883873,+,MIR3,SINE,MIR,22,143,-65,18883741,18883938 -6 + chr22 18884141 18884227 chr22,18884141,18884227,-,MIRc,SINE,MIR,-80,188,103,18884061,18884329 +6 - chr22 18894329 18894407 chr22,18894118,18894685,-,HSATI,Satellite,Satellite,-10,567,1,18894108,18894685 +1 - chr22 18951934 18951960 chr22,18951651,18951960,+,AluY,SINE,Alu,1,310,-1,18951651,18951961 -5 + chr22 18952793 18953577 chr22,18952793,18953577,-,LTR1A2,LTR,ERV1,0,837,9,18952793,18953585 +6 - chr22 18959133 18959223 chr22,18959133,18959223,+,MIRc,SINE,MIR,64,154,-114,18959070,18959337 -6 + chr22 18959222 18959288 chr22,18959222,18959288,-,L2b,LINE,L2,-2,3373,3306,18959220,18962593 +6 - chr22 18970514 18970576 chr22,18970461,18970576,+,G-rich,Low_complexity,Low_complexity,1,117,0,18970461,18970576 +1 + chr22 18986150 18986428 chr22,18986150,18986445,+,AluSx,SINE,Alu,1,299,-13,18986150,18986458 +5 + chr22 18988101 18988195 chr22,18988101,18988240,+,Tigger4a,DNA,TcMar-Tigger,2,189,-47,18988100,18988287 +4 + chr22 18989580 18989855 chr22,18989547,18989855,-,AluY,SINE,Alu,-3,308,1,18989544,18989855 -2 - chr22 18989908 18990114 chr22,18989908,18990114,-,MSTB,LTR,ERVL-MaLR,-217,209,1,18989691,18990114 -6 - chr22 18990135 18990614 chr22,18990135,18990614,-,L1MB3,LINE,L1,-115,6068,5571,18990020,18996184 -6 - chr22 18993626 18993739 chr22,18993626,18993739,-,MIRb,SINE,MIR,-17,213,96,18993609,18993834 -6 - chr22 18998364 18998460 chr22,18998364,18998460,+,Alu,SINE,Alu,210,305,-7,18998155,18998467 +6 + chr22 19005833 19005942 chr22,19005691,19006156,+,L1ME3,LINE,L1,1720,2342,-4291,19003972,19010447 +3 + chr22 19014598 19014786 chr22,19014586,19015183,-,L1MC5,LINE,L1,-13,9291,8672,19014573,19023854 -5 - chr22 19017834 19018042 chr22,19017223,19018042,+,L1M2,LINE,L1,3999,4836,-1307,19013225,19019349 +1 + chr22 19020023 19020248 chr22,19020023,19020281,+,Charlie1a,DNA,hAT-Charlie,1035,1319,-136,19018989,19020417 +5 + chr22 19023520 19023550 chr22,19023520,19023595,-,MIRb,SINE,MIR,0,268,187,19023520,19023781 -5 - chr22 19046162 19046586 chr22,19046022,19046586,-,L1MD,LINE,L1,-1495,4651,4077,19044527,19050662 +5 - chr22 19047909 19048131 chr22,19047909,19048131,+,AluSz,SINE,Alu,1,221,-91,19047909,19048222 -6 + chr22 19124309 19124341 chr22,19123923,19124341,-,MER4D1,LTR,ERV1,-442,458,1,19123481,19124341 +5 - chr22 19128372 19128449 chr22,19128372,19128611,+,AluSz,SINE,Alu,5,243,-69,19128368,19128680 -1 + chr22 19172216 19172271 chr22,19172216,19172271,+,L3,LINE,CR1,3936,3992,-107,19168281,19172378 +6 + chr22 19448442 19448695 chr22,19448428,19448695,-,AluJr,SINE,Alu,-24,288,2,19448404,19448696 -2 - chr22 19449098 19449202 chr22,19449098,19449202,-,L3,LINE,CR1,-3877,222,104,19445221,19449305 -6 - chr22 19454297 19454605 chr22,19454297,19454657,+,THE1B,LTR,ERVL-MaLR,3,364,0,19454295,19454657 +5 + chr22 19456874 19456946 chr22,19456874,19456946,+,L3,LINE,CR1,1888,1963,-2136,19454987,19459082 +6 + chr22 19667182 19667199 chr22,19667182,19667217,-,MLT1F2,LTR,ERVL-MaLR,-1,559,525,19667181,19667741 -4 - chr22 19667446 19667555 chr22,19667217,19668050,+,LTR1A2,LTR,ERV1,3,837,0,19667215,19668050 +5 + chr22 20062980 20063153 chr22,20062849,20063185,+,AluSq2,SINE,Alu,12,312,-1,20062838,20063186 -5 + chr22 20065496 20065639 chr22,20065339,20065639,-,AluSg,SINE,Alu,-10,300,1,20065329,20065639 +4 - chr22 20067014 20067133 chr22,20066961,20067133,+,MLT1C,LTR,ERVL-MaLR,1,182,-285,20066961,20067418 -4 + chr22 20067133 20067249 chr22,20067133,20067437,+,AluJb,SINE,Alu,1,302,-10,20067133,20067447 -2 + chr22 20069043 20069165 chr22,20069021,20069186,+,FRAM,SINE,Alu,1,165,-11,20069021,20069197 -1 + chr22 20200312 20200492 chr22,20200312,20200492,-,L1M5,LINE,L1,-323,5801,5621,20199989,20206112 +6 - chr22 20201051 20201326 chr22,20201051,20201361,+,AluSz,SINE,Alu,1,310,-2,20201051,20201363 -2 + chr22 20206397 20206413 chr22,20205677,20206413,-,LTR1A2,LTR,ERV1,0,837,1,20205677,20206413 -1 - chr22 20318119 20318265 chr22,20317874,20318265,+,L1M5,LINE,L1,3548,3989,-2157,20314327,20320422 -5 + chr22 20318293 20318572 chr22,20318293,20318572,+,L1MC5a,LINE,L1,2120,2418,-359,20316174,20318931 -6 + chr22 20338805 20339016 chr22,20338665,20339226,+,HSATI,Satellite,Satellite,6,567,-10,20338660,20339236 +1 + chr22 20344233 20344243 chr22,20344119,20344243,-,MIR3,SINE,MIR,-65,143,4,20344054,20344246 +4 - chr22 20352520 20352647 chr22,20352520,20352647,-,MIRc,SINE,MIR,-80,188,51,20352440,20352697 -6 - chr22 20352912 20353092 chr22,20352912,20353092,-,L1PA12,LINE,L1,0,6168,5980,20352912,20359071 -6 - chr22 20353857 20353933 chr22,20353857,20353933,-,L2c,LINE,L2,-5,3382,3305,20353852,20357237 -6 - chr22 20522070 20522207 chr22,20522030,20522359,-,L1ME3,LINE,L1,-339,5823,5488,20521691,20527846 +5 - chr22 20522821 20522866 chr22,20522821,20522866,+,(GCAGA)n,Simple_repeat,Simple_repeat,1,45,0,20522821,20522866 -6 + chr22 20701114 20701324 chr22,20701094,20701324,-,L1MC,LINE,L1,-2197,3949,3703,20698897,20705026 -1 - chr22 20701354 20701470 chr22,20701354,20701470,+,AluJb,SINE,Alu,174,293,-19,20701181,20701489 +6 + chr22 20701661 20701813 chr22,20701661,20701813,-,L1ME4c,LINE,L1,-333,497,342,20701328,20702154 -6 - chr22 20702839 20702867 chr22,20702839,20702867,+,(GCA)n,Simple_repeat,Simple_repeat,1,29,0,20702839,20702867 +1 + chr22 20703893 20703942 chr22,20703893,20703942,+,G-rich,Low_complexity,Low_complexity,1,51,0,20703893,20703942 +6 + chr22 20704085 20704127 chr22,20704085,20704127,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,42,0,20704085,20704127 +5 + chr22 20704311 20704353 chr22,20704301,20704353,+,(GCCGCT)n,Simple_repeat,Simple_repeat,1,56,0,20704301,20704353 +5 + chr22 20723047 20723319 chr22,20723035,20723319,-,AluY,SINE,Alu,-19,292,1,20723016,20723319 -1 - chr22 20723319 20723372 chr22,20723319,20723372,-,L1MC5a,LINE,L1,-2042,735,685,20721277,20724056 -6 - chr22 20723415 20723548 chr22,20723415,20723548,+,AluSp,SINE,Alu,1,127,-186,20723415,20723734 +6 + chr22 20723548 20723766 chr22,20723548,20723840,+,AluSx,SINE,Alu,1,296,-16,20723548,20723856 +4 + chr22 20724241 20724319 chr22,20724137,20724319,+,AluSp,SINE,Alu,128,297,-16,20724010,20724335 +2 + chr22 20724323 20724632 chr22,20724323,20724632,+,AluSx,SINE,Alu,1,309,-3,20724323,20724635 +6 + chr22 20724633 20724727 chr22,20724633,20724727,+,L1MC5,LINE,L1,7525,7620,-1684,20717109,20726411 +6 + chr22 20725381 20725616 chr22,20725381,20725616,+,MLT1B,LTR,ERVL-MaLR,1,252,-138,20725381,20725754 +6 + chr22 20725616 20725920 chr22,20725616,20725928,+,AluJb,SINE,Alu,5,299,-13,20725612,20725941 +5 + chr22 20890900 20891062 chr22,20890793,20891062,+,AluYh3a3,SINE,Alu,1,275,-17,20890793,20891079 -4 + chr22 20981566 20981623 chr22,20981566,20981623,-,L2b,LINE,L2,-341,3085,3026,20981225,20984648 +6 - chr22 21002625 21002808 chr22,21002625,21002808,-,AluYh3,SINE,Alu,0,311,130,21002625,21002937 -6 - chr22 21010042 21010081 chr22,21010042,21010081,-,MIR,SINE,MIR,-76,186,148,21009966,21010228 -6 - chr22 21042703 21042966 chr22,21042675,21042966,-,AluSz,SINE,Alu,-10,302,2,21042665,21042967 -2 - chr22 21114607 21114664 chr22,21114561,21114664,-,AluSz6,SINE,Alu,0,312,210,21114561,21114873 +5 - chr22 21117942 21117990 chr22,21117942,21117990,+,(GCT)n,Simple_repeat,Simple_repeat,1,49,0,21117942,21117990 -6 + chr22 21123634 21123914 chr22,21123634,21123914,-,AluJr,SINE,Alu,-15,297,2,21123619,21123915 +6 - chr22 21124076 21124223 chr22,21124076,21124223,-,MIR3,SINE,MIR,-36,172,26,21124040,21124248 +6 - chr22 21124337 21124365 chr22,21124337,21124365,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,21124337,21124365 -6 + chr22 21124369 21124451 chr22,21124369,21124596,-,AluSx,SINE,Alu,-79,233,6,21124290,21124601 +1 - chr22 21167758 21167969 chr22,21167613,21168179,+,HSATI,Satellite,Satellite,1,567,-10,21167613,21168189 +1 + chr22 21170705 21170800 chr22,21170705,21170800,+,(TG)n,Simple_repeat,Simple_repeat,1,98,0,21170705,21170800 +6 + chr22 21181461 21181588 chr22,21181461,21181588,-,MIRc,SINE,MIR,-80,188,51,21181381,21181638 -6 - chr22 21181842 21182026 chr22,21181842,21182026,-,L1PA12,LINE,L1,0,6168,5980,21181842,21188005 -6 - chr22 21182790 21182871 chr22,21182790,21182871,-,L2c,LINE,L2,-5,3382,3300,21182785,21186170 -6 - chr22 21184565 21184839 chr22,21184565,21184839,+,L1PA2,LINE,L1,5879,6155,0,21178687,21184839 +6 + chr22 21191797 21191943 chr22,21191797,21191943,+,MLT1C,LTR,ERVL-MaLR,251,382,-123,21191547,21192066 +6 + chr22 21301181 21301348 chr22,21301181,21301348,-,MLT1C,LTR,ERVL-MaLR,-54,413,251,21301127,21301598 +6 - chr22 21302017 21302174 chr22,21302017,21302174,-,L1ME4c,LINE,L1,-260,570,407,21301757,21302580 -6 - chr22 21302568 21302619 chr22,21302568,21302619,+,A-rich,Low_complexity,Low_complexity,1,52,0,21302568,21302619 +6 + chr22 21308306 21308580 chr22,21308306,21308580,-,L1PA2,LINE,L1,0,6155,5879,21308306,21314458 +6 - chr22 21309923 21310004 chr22,21309923,21310004,+,L2c,LINE,L2,3300,3382,-5,21306624,21310009 -6 + chr22 21310769 21310953 chr22,21310769,21310953,+,L1PA12,LINE,L1,5980,6168,0,21304790,21310953 -6 + chr22 21311207 21311304 chr22,21311207,21311304,+,MIRc,SINE,MIR,51,156,-112,21311157,21311416 -6 + chr22 21321999 21322094 chr22,21321999,21322094,+,(AC)n,Simple_repeat,Simple_repeat,1,98,0,21321999,21322094 -6 + chr22 21324831 21325042 chr22,21324620,21325186,-,HSATI,Satellite,Satellite,-10,567,1,21324610,21325186 +1 - chr22 21466423 21466633 chr22,21466403,21466633,-,L1M5,LINE,L1,-2197,3949,3703,21464206,21470335 -1 - chr22 21466663 21466779 chr22,21466663,21466779,+,AluJb,SINE,Alu,174,293,-19,21466490,21466798 +6 + chr22 21466970 21467235 chr22,21466970,21467235,-,L1ME4c,LINE,L1,-333,497,205,21466637,21467439 -1 - chr22 21467939 21467978 chr22,21467939,21467978,+,(GC)n,Simple_repeat,Simple_repeat,1,42,0,21467939,21467978 +6 + chr22 21467978 21468002 chr22,21467978,21468002,+,(GGAGCGC)n,Simple_repeat,Simple_repeat,5,70,0,21467974,21468002 +6 + chr22 21468050 21468109 chr22,21468050,21468109,+,G-rich,Low_complexity,Low_complexity,1,62,0,21468050,21468109 +1 + chr22 21468147 21468181 chr22,21468147,21468181,+,(GCA)n,Simple_repeat,Simple_repeat,1,35,0,21468147,21468181 +6 + chr22 21469392 21469433 chr22,21469392,21469433,+,(CCCTCC)n,Simple_repeat,Simple_repeat,1,41,0,21469392,21469433 +6 + chr22 21469633 21469684 chr22,21469633,21469684,+,(CGCTGC)n,Simple_repeat,Simple_repeat,1,54,0,21469633,21469684 +6 + chr22 21470106 21470255 chr22,21470106,21470255,-,L1MEd,LINE,L1,-4895,2191,2025,21465211,21472279 -6 - chr22 21470374 21470675 chr22,21470374,21470675,-,AluY,SINE,Alu,-10,301,1,21470364,21470675 -6 - chr22 21470678 21470838 chr22,21470678,21470838,-,L1MEd,LINE,L1,-3301,3018,2835,21467377,21473672 -6 - chr22 21470838 21471130 chr22,21470838,21471130,-,AluSc,SINE,Alu,-19,290,1,21470819,21471130 -6 - chr22 21471130 21471269 chr22,21471130,21471431,-,L1MEd,LINE,L1,-3485,2834,2323,21467645,21473753 -5 - chr22 21640844 21641011 chr22,21640817,21641011,-,L2-1_AMi,LINE,L2,-585,650,456,21640232,21641466 -1 - chr22 21641116 21641182 chr22,21641116,21641182,-,MamTip1,DNA,hAT-Tip100,-27,240,174,21641089,21641355 -6 - chr22 21662114 21662197 chr22,21662114,21662197,-,L2b,LINE,L2,-194,3181,3099,21661920,21665295 -6 - chr22 21662237 21662363 chr22,21662237,21662508,-,L1MC1,LINE,L1,-506,5827,5522,21661731,21668029 -5 - chr22 21938424 21938467 chr22,21938424,21938467,+,(GAGCGA)n,Simple_repeat,Simple_repeat,1,44,0,21938424,21938467 +6 + chr22 21938581 21938648 chr22,21938581,21938648,+,A-rich,Low_complexity,Low_complexity,1,68,0,21938581,21938648 +6 + chr22 21938762 21938875 chr22,21938762,21938875,-,MER5C,DNA,hAT-Charlie,-49,264,144,21938713,21939018 -6 - chr22 21939548 21939587 chr22,21939548,21939587,+,(TCC)n,Simple_repeat,Simple_repeat,1,39,0,21939548,21939587 +6 + chr22 21941102 21941213 chr22,21940897,21941213,-,AluJr,SINE,Alu,-11,301,1,21940886,21941213 -2 - chr22 21942268 21942450 chr22,21942268,21942450,-,AluSp,SINE,Alu,-11,302,120,21942257,21942569 -6 - chr22 21944886 21944968 chr22,21944886,21944968,+,MIR,SINE,MIR,94,179,-83,21944793,21945051 +6 + chr22 21944982 21945088 chr22,21944982,21945088,+,MIRc,SINE,MIR,66,173,-95,21944917,21945183 +6 + chr22 21945091 21945247 chr22,21945091,21945247,+,MLT1C,LTR,ERVL-MaLR,1,150,-317,21945091,21945564 +6 + chr22 21945217 21945347 chr22,21945217,21945347,+,FLAM_C,SINE,Alu,12,220,-82,21945206,21945429 +6 + chr22 21945343 21945694 chr22,21945343,21945694,+,MLT1C,LTR,ERVL-MaLR,112,451,-16,21945232,21945710 +6 + chr22 21946965 21947091 chr22,21946965,21947091,-,MIRb,SINE,MIR,-116,152,2,21946849,21947092 -6 - chr22 21948194 21948342 chr22,21948194,21948342,+,FLAM_C,SINE,Alu,1,135,-8,21948194,21948350 +6 + chr22 21949950 21950066 chr22,21949950,21950066,-,MIR,SINE,MIR,-43,219,84,21949907,21950149 -6 - chr22 21950616 21950924 chr22,21950616,21950924,-,AluSx1,SINE,Alu,-6,306,1,21950610,21950924 -6 - chr22 21951025 21951129 chr22,21951025,21951129,-,L1MB3,LINE,L1,0,6183,6075,21951025,21957203 -6 - chr22 21951131 21951185 chr22,21951131,21951185,+,L2c,LINE,L2,3256,3309,-78,21947876,21951263 +6 + chr22 21951349 21951646 chr22,21951349,21951646,-,AluSq2,SINE,Alu,-7,306,1,21951342,21951646 -6 - chr22 21951699 21951888 chr22,21951699,21951888,-,MIRb,SINE,MIR,-56,212,21,21951643,21951908 -6 - chr22 21952077 21952121 chr22,21952077,21952121,-,MIRb,SINE,MIR,-9,259,215,21952068,21952335 -6 - chr22 21953081 21953185 chr22,21953081,21953185,-,MIR,SINE,MIR,-129,133,39,21952952,21953223 -6 - chr22 21953261 21953607 chr22,21953261,21953607,-,MLT1D,LTR,ERVL-MaLR,-65,440,82,21953196,21953688 -6 - chr22 21953607 21953921 chr22,21953607,21953921,-,AluSz,SINE,Alu,-6,306,1,21953601,21953921 -6 - chr22 21953921 21953990 chr22,21953921,21953990,-,MLT1D,LTR,ERVL-MaLR,-424,81,5,21953497,21953994 -6 - chr22 21954009 21954312 chr22,21954009,21954312,-,AluJo,SINE,Alu,-11,301,1,21953998,21954312 -6 - chr22 21954312 21954444 chr22,21954312,21954444,+,ORSL,DNA,hAT-Tip100,71,225,-50,21954242,21954494 +6 + chr22 21954714 21954889 chr22,21954714,21954889,+,MIRc,SINE,MIR,44,221,-47,21954671,21954936 +6 + chr22 21956733 21956829 chr22,21956733,21956829,-,OldhAT1,DNA,hAT-Ac,-459,2389,2303,21956274,21959131 -6 - chr22 21957640 21957696 chr22,21957640,21957696,+,(CCTGCTC)n,Simple_repeat,Simple_repeat,1,56,0,21957640,21957696 +6 + chr22 21959018 21959111 chr22,21959018,21959111,-,MIRc,SINE,MIR,-81,187,94,21958937,21959204 -6 - chr22 21960599 21960744 chr22,21960599,21960744,-,MIRb,SINE,MIR,-42,226,86,21960557,21960829 -6 - chr22 21963051 21963360 chr22,21963051,21963360,+,AluSx1,SINE,Alu,1,306,-6,21963051,21963366 +6 + chr22 21965584 21965890 chr22,21965584,21965890,+,AluSx,SINE,Alu,1,309,-3,21965584,21965893 +6 + chr22 21965895 21966197 chr22,21965895,21966197,-,AluJr,SINE,Alu,-15,297,4,21965880,21966200 -6 - chr22 21966202 21966279 chr22,21966202,21966279,-,AluJr,SINE,Alu,-179,133,60,21966023,21966338 -6 - chr22 21966465 21966587 chr22,21966465,21966587,-,Charlie8,DNA,hAT-Charlie,-2259,169,47,21964206,21966633 -6 - chr22 21966980 21967091 chr22,21966980,21967091,+,MamSINE1,SINE,tRNA-RTE,38,141,-149,21966943,21967240 +6 + chr22 21967160 21967231 chr22,21967160,21967231,+,MIR,SINE,MIR,19,101,-161,21967142,21967392 +6 + chr22 21968082 21968227 chr22,21968082,21968227,-,AluJo,SINE,Alu,-31,281,136,21968051,21968362 -6 - chr22 21968238 21968311 chr22,21968238,21968311,+,Charlie15a,DNA,hAT-Charlie,150,224,0,21968089,21968311 +6 + chr22 21969124 21969318 chr22,21969124,21969318,-,AluJr,SINE,Alu,-2,310,134,21969122,21969451 -6 - chr22 21969318 21969630 chr22,21969318,21969630,+,AluSx1,SINE,Alu,1,312,0,21969318,21969630 +6 + chr22 21969630 21969642 chr22,21969630,21969642,-,AluJr,SINE,Alu,-179,133,134,21969451,21969775 -6 - chr22 21969642 21969930 chr22,21969642,21969930,+,AluJb,SINE,Alu,3,292,-20,21969640,21969950 +6 + chr22 21969930 21970069 chr22,21969930,21970069,-,AluJr,SINE,Alu,-179,133,1,21969751,21970069 -6 - chr22 21971429 21971465 chr22,21971429,21971465,+,(GGCAGGA)n,Simple_repeat,Simple_repeat,1,36,0,21971429,21971465 +6 + chr22 21972202 21972357 chr22,21972202,21972357,+,L1ME4a,LINE,L1,5961,6124,0,21966242,21972357 +6 + chr22 21972769 21972925 chr22,21972769,21972925,-,MIRc,SINE,MIR,-85,183,17,21972684,21972941 -6 - chr22 21973278 21973532 chr22,21973278,21973532,-,AluJb,SINE,Alu,-15,297,54,21973263,21973585 -6 - chr22 21973561 21973611 chr22,21973561,21973611,+,MIRb,SINE,MIR,40,90,-178,21973522,21973789 +6 + chr22 21973701 21973895 chr22,21973701,21973895,-,MIRb,SINE,MIR,-21,247,47,21973680,21973941 -6 - chr22 21974119 21974211 chr22,21974119,21974211,-,MIRb,SINE,MIR,-170,98,2,21973949,21974212 -6 - chr22 21974881 21975046 chr22,21974881,21975046,+,L2,LINE,L2,411,572,-2847,21974471,21977893 +6 + chr22 21976237 21976322 chr22,21976237,21976322,-,MER5B,DNA,hAT-Charlie,-21,157,75,21976216,21976396 -6 - chr22 21976807 21977005 chr22,21976807,21977005,+,L1M5,LINE,L1,4840,5051,-1095,21971968,21978100 +6 + chr22 21977029 21977217 chr22,21977029,21977217,+,FAM,SINE,Alu,1,183,-2,21977029,21977219 +6 + chr22 21977251 21977554 chr22,21977251,21977554,+,AluSx1,SINE,Alu,5,308,-4,21977247,21977558 +6 + chr22 22036408 22036494 chr22,22036408,22036525,+,L2b,LINE,L2,3247,3370,-5,22033162,22036530 +4 + chr22 22039437 22039716 chr22,22039346,22039716,-,MSTA,LTR,ERVL-MaLR,0,428,1,22039346,22039716 -2 - chr22 22039844 22040065 chr22,22039844,22040144,-,L2a,LINE,L2,-19,3407,3074,22039825,22043217 -5 - chr22 22264601 22264674 chr22,22264559,22264674,-,MLT2C1,LTR,ERVL,-59,504,403,22264500,22265076 -1 - chr22 22264708 22264810 chr22,22264708,22264810,-,MLT2C1,LTR,ERVL,-291,106,2,22264417,22264811 -6 - chr22 22265165 22265216 chr22,22265165,22265216,-,MIR3,SINE,MIR,-65,143,91,22265100,22265306 -6 - chr22 22265495 22265533 chr22,22265495,22265533,+,(CT)n,Simple_repeat,Simple_repeat,1,40,0,22265495,22265533 +6 + chr22 22265728 22265775 chr22,22265728,22265775,-,LTR103_Mam,LTR,ERV1?,-391,84,38,22265337,22265812 -6 - chr22 22266046 22266180 chr22,22266046,22266180,+,MIRb,SINE,MIR,21,156,-112,22266026,22266292 +6 + chr22 22266426 22266719 chr22,22266426,22266719,+,MLT1D,LTR,ERVL-MaLR,182,505,0,22266245,22266719 +6 + chr22 22267095 22267302 chr22,22267095,22267302,+,MamRep38,DNA,hAT,48,252,-43,22267048,22267345 +6 + chr22 22268379 22268615 chr22,22268379,22268615,+,MIR3,SINE,MIR,1,238,-30,22268379,22268645 +6 + chr22 22269324 22269629 chr22,22269324,22269629,+,AluSq,SINE,Alu,1,313,0,22269324,22269629 +6 + chr22 22270432 22270554 chr22,22270432,22270554,-,MER34B-int,LTR,ERV1,-4102,1254,1149,22266330,22271702 -6 - chr22 22270554 22270880 chr22,22270554,22270880,-,MER34C_,LTR,ERV1,-155,430,63,22270399,22270942 -6 - chr22 22271607 22271620 chr22,22271607,22271620,+,A-rich,Low_complexity,Low_complexity,1,12,0,22271607,22271620 +6 + chr22 22271620 22272387 chr22,22271620,22272387,+,L1PA5,LINE,L1,5408,6154,0,22266213,22272387 +6 + chr22 22272900 22272946 chr22,22272900,22272946,+,A-rich,Low_complexity,Low_complexity,1,48,0,22272900,22272946 +6 + chr22 22283928 22284190 chr22,22283483,22284190,+,L1M2,LINE,L1,3881,4594,-1549,22279603,22285739 -5 + chr22 22284753 22285826 chr22,22284753,22285826,-,L1MC4,LINE,L1,-1118,1476,977,22283635,22286802 +6 - chr22 22285826 22286398 chr22,22285826,22286398,+,(CTCAT)n,Simple_repeat,Simple_repeat,1,614,0,22285826,22286398 -6 + chr22 22286402 22286703 chr22,22286402,22286703,-,HAL1b,LINE,L1,-1226,1195,881,22285176,22287583 +6 - chr22 22286704 22287010 chr22,22286704,22287010,+,(TCATT)n,Simple_repeat,Simple_repeat,1,336,0,22286704,22287010 -6 + chr22 22287010 22287220 chr22,22287010,22287628,-,L1MEd,LINE,L1,-4872,1343,872,22282138,22288499 +1 - chr22 22293733 22294081 chr22,22291132,22294678,+,G-rich,Low_complexity,Low_complexity,1,3802,0,22291132,22294678 +1 + chr22 22294620 22294678 chr22,22291132,22294678,+,G-rich,Low_complexity,Low_complexity,1,3802,0,22291132,22294678 +1 + chr22 22562863 22562972 chr22,22562856,22563242,-,MLT1B,LTR,ERVL-MaLR,-2,388,3,22562854,22563244 -3 - chr22 22564005 22564296 chr22,22564005,22564296,+,AluSx,SINE,Alu,1,291,-21,22564005,22564317 +6 + chr22 22565742 22566069 chr22,22565742,22566069,-,MLT1E1A,LTR,ERVL-MaLR,-5,675,356,22565737,22566424 -6 - chr22 22566060 22566106 chr22,22566060,22566106,-,MLT1E1A,LTR,ERVL-MaLR,-506,148,103,22565554,22566208 -6 - chr22 22566074 22566184 chr22,22566074,22566184,-,MLT1E1A,LTR,ERVL-MaLR,-396,164,52,22565678,22566235 -6 - chr22 23326659 23326791 chr22,23326659,23326796,+,L2c,LINE,L2,3117,3273,-102,23323543,23326898 +4 + chr22 23434560 23434579 chr22,23434545,23434579,-,MIRc,SINE,MIR,-118,150,117,23434427,23434695 -2 - chr22 23469411 23469468 chr22,23469411,23469468,+,MIR,SINE,MIR,20,77,-185,23469392,23469653 -6 + chr22 23486879 23486980 chr22,23486669,23487237,-,HSATI,Satellite,Satellite,-11,566,1,23486658,23487237 +1 - chr22 23512514 23512554 chr22,23512514,23512554,-,MIRc,SINE,MIR,-145,123,84,23512369,23512637 +6 - chr22 23513350 23513602 chr22,23513350,23513769,-,L2b,LINE,L2,-1,3374,2897,23513349,23516665 +1 - chr22 23567064 23567104 chr22,23566936,23567104,+,MIR1_Amn,SINE,MIR,2,153,-55,23566935,23567159 +1 + chr22 23567205 23567324 chr22,23567205,23567393,-,L2a,LINE,L2,-37,3389,3193,23567168,23570585 -4 - chr22 23580929 23580957 chr22,23580929,23580957,+,(CA)n,Simple_repeat,Simple_repeat,1,28,0,23580929,23580957 -6 + chr22 23580965 23581198 chr22,23580965,23581198,-,L1MA9,LINE,L1,-5,6307,6049,23580960,23587246 +6 - chr22 23583424 23583478 chr22,23583424,23583500,-,Helitron3Na_Mam,RC,Helitron,-376,110,23,23583048,23583522 +2 - chr22 23630941 23630962 chr22,23630941,23631132,+,L1PA10,LINE,L1,5965,6163,-5,23624977,23631137 -2 + chr22 23632788 23632910 chr22,23632625,23632941,+,AluSq2,SINE,Alu,1,311,-2,23632625,23632943 -3 + chr22 23635936 23636083 chr22,23635915,23636209,-,L1ME1,LINE,L1,-288,5891,5596,23635627,23641804 +3 - chr22 23637683 23637804 chr22,23637608,23637824,+,AluSx,SINE,Alu,84,299,-13,23637525,23637837 -3 + chr22 23686933 23686995 chr22,23686933,23687140,-,MIRb,SINE,MIR,-16,252,37,23686917,23687176 +2 - chr22 23690979 23691108 chr22,23690979,23691108,+,MIRb,SINE,MIR,69,204,-64,23690911,23691172 -6 + chr22 23691427 23691602 chr22,23691427,23691602,-,L2a,LINE,L2,-1,3425,3243,23691426,23694844 +6 - chr22 23692803 23692878 chr22,23692803,23692878,+,(CAGCGC)n,Simple_repeat,Simple_repeat,1,75,0,23692803,23692878 -6 + chr22 23694164 23694244 chr22,23694164,23694244,-,L3,LINE,CR1,-200,3899,3820,23693964,23698063 +6 - chr22 23695438 23695482 chr22,23695438,23695482,+,(CTG)n,Simple_repeat,Simple_repeat,1,44,0,23695438,23695482 -6 + chr22 23700726 23700845 chr22,23700074,23701270,+,L1MA6,LINE,L1,5115,6280,-20,23694960,23701290 -3 + chr22 23705429 23705541 chr22,23705210,23705936,+,L1MA6,LINE,L1,5523,6259,-41,23699688,23705977 -3 + chr22 23709130 23709241 chr22,23708980,23709629,+,L1MA6,LINE,L1,5606,6248,-52,23703375,23709681 -3 + chr22 23709786 23709831 chr22,23709727,23709831,-,L1M2,LINE,L1,-823,5477,5375,23708904,23715205 +4 - chr22 23738678 23738692 chr22,23738649,23738692,+,L1PREC2,LINE,L1,2409,2463,-3683,23736241,23742375 -5 + chr22 23738858 23739041 chr22,23738858,23739041,-,Charlie4z,DNA,hAT-Charlie,-5,162,4,23738853,23739044 +6 - chr22 23739270 23739289 chr22,23739270,23739584,-,AluYm1,SINE,Alu,-7,304,2,23739263,23739585 +1 - chr22 23856427 23856545 chr22,23856337,23856545,+,L1M5,LINE,L1,3738,3952,-2194,23852600,23858739 -5 + chr22 23865248 23865434 chr22,23865136,23865434,+,AluSp,SINE,Alu,3,301,-12,23865134,23865446 -5 + chr22 23865434 23865883 chr22,23865434,23865883,-,MER31A,LTR,ERV1,-15,470,41,23865419,23865923 +6 - chr22 23865883 23866198 chr22,23865883,23866198,+,AluJo,SINE,Alu,1,312,0,23865883,23866198 -6 + chr22 23866198 23866234 chr22,23866198,23866234,-,MER31A,LTR,ERV1,-424,42,2,23865774,23866235 +6 - chr22 23866517 23866630 chr22,23866517,23866630,+,MIR1_Amn,SINE,MIR,44,144,-64,23866474,23866694 -6 + chr22 23866634 23866873 chr22,23866634,23866873,+,AluJr,SINE,Alu,1,237,-75,23866634,23866948 -6 + chr22 23866925 23867109 chr22,23866925,23867109,-,LTR33,LTR,ERVL,-266,249,44,23866659,23867152 +6 - chr22 23867129 23867200 chr22,23867129,23867200,+,MER21C,LTR,ERVL,9,81,-857,23867121,23868057 -6 + chr22 23867200 23867497 chr22,23867200,23867497,-,AluSq2,SINE,Alu,-18,295,1,23867182,23867497 +6 - chr22 23867497 23867532 chr22,23867497,23867532,+,MER21C,LTR,ERVL,82,119,-819,23867416,23868351 -6 + chr22 23867567 23867708 chr22,23867567,23867708,+,MER21C,LTR,ERVL,99,247,-621,23867469,23868329 -6 + chr22 23867709 23868223 chr22,23867709,23868223,+,MER21C,LTR,ERVL,401,928,-10,23867309,23868233 -6 + chr22 23868812 23868937 chr22,23868812,23868937,+,MIR3,SINE,MIR,8,134,-134,23868805,23869071 -6 + chr22 23869072 23869205 chr22,23869072,23869205,+,AluJb,SINE,Alu,6,134,-178,23869067,23869383 -6 + chr22 23869205 23869500 chr22,23869205,23869500,+,AluSx,SINE,Alu,1,295,-17,23869205,23869517 -6 + chr22 23869500 23869653 chr22,23869500,23869653,+,AluJb,SINE,Alu,135,286,-26,23869366,23869679 -6 + chr22 23869671 23870088 chr22,23869671,23870088,-,MLT1A1,LTR,ERVL-MaLR,-2,406,1,23869669,23870088 +6 - chr22 23870675 23870707 chr22,23870675,23870707,+,(TTTTATT)n,Simple_repeat,Simple_repeat,1,32,0,23870675,23870707 -6 + chr22 23870707 23870990 chr22,23870707,23870990,-,AluSp,SINE,Alu,-28,285,2,23870679,23870991 +6 - chr22 23871123 23871437 chr22,23871123,23871437,+,AluSq2,SINE,Alu,1,312,-1,23871123,23871438 -6 + chr22 23871457 23871753 chr22,23871457,23871753,+,AluY,SINE,Alu,1,293,-18,23871457,23871771 -6 + chr22 23871874 23872038 chr22,23871874,23872038,-,ERVL-E-int,LTR,ERVL,-2265,3402,3228,23869609,23875265 +6 - chr22 23872053 23872344 chr22,23872053,23872344,+,AluJb,SINE,Alu,1,282,-30,23872053,23872374 -6 + chr22 23872347 23872369 chr22,23872347,23872369,+,(AT)n,Simple_repeat,Simple_repeat,1,22,0,23872347,23872369 -6 + chr22 23872591 23873025 chr22,23872591,23873025,-,ERVL-E-int,LTR,ERVL,-2647,3020,2568,23869944,23875592 +6 - chr22 23873025 23873277 chr22,23873025,23873300,-,AluSx,SINE,Alu,-16,296,21,23873009,23873320 +1 - chr22 23894672 23894706 chr22,23894672,23894706,+,G-rich,Low_complexity,Low_complexity,1,36,0,23894672,23894706 -6 + chr22 23894955 23894999 chr22,23894955,23894999,+,(CGCGG)n,Simple_repeat,Simple_repeat,1,45,0,23894955,23894999 -6 + chr22 23895938 23895994 chr22,23895938,23895994,+,AluYm1,SINE,Alu,5,60,-251,23895934,23896245 -6 + chr22 23896010 23896050 chr22,23896010,23896050,+,(TCTCCAG)n,Simple_repeat,Simple_repeat,1,44,0,23896010,23896050 -6 + chr22 23901432 23901945 chr22,23901344,23901945,-,MER66D,LTR,ERV1,0,484,1,23901344,23901945 +5 - chr22 23901962 23902087 chr22,23901962,23902087,+,L1ME3B,LINE,L1,5308,5451,-711,23896655,23902798 -6 + chr22 23902155 23902456 chr22,23902155,23902456,+,L1ME3B,LINE,L1,5730,6053,-189,23896426,23902645 -6 + chr22 23903675 23903974 chr22,23903675,23903974,-,AluJr,SINE,Alu,-2,310,2,23903673,23903975 +6 - chr22 23969582 23969787 chr22,23969582,23969787,+,AluJb,SINE,Alu,45,251,-61,23969538,23969848 +6 + chr22 24295364 24295505 chr22,24295364,24295505,-,L1PA16,LINE,L1,-17,6149,5994,24295347,24301498 -6 - chr22 24295669 24295959 chr22,24295669,24295959,+,AluSq10,SINE,Alu,1,294,-19,24295669,24295978 +6 + chr22 24296125 24296303 chr22,24296125,24296303,+,MIRb,SINE,MIR,40,225,-37,24296086,24296340 +6 + chr22 24296779 24296947 chr22,24296779,24296947,+,MER20B,DNA,hAT-Charlie,31,195,-588,24296749,24297535 +6 + chr22 24296947 24297232 chr22,24296947,24297232,-,AluSx,SINE,Alu,-14,298,1,24296933,24297232 -6 - chr22 24297232 24297422 chr22,24297232,24297422,+,MER20B,DNA,hAT-Charlie,196,391,-392,24297037,24297814 +6 + chr22 24297424 24297474 chr22,24297424,24297474,-,MLT2B4,LTR,ERVL,-2,565,516,24297422,24297989 -6 - chr22 24297503 24297544 chr22,24297503,24297544,+,(TA)n,Simple_repeat,Simple_repeat,1,42,0,24297503,24297544 +6 + chr22 24297556 24297587 chr22,24297556,24297587,+,MLT2C1,LTR,ERVL,519,549,-14,24297038,24297601 +6 + chr22 24297603 24298032 chr22,24297603,24298032,+,MER44B,DNA,TcMar-Tigger,5,445,-105,24297599,24298137 +6 + chr22 24298032 24298340 chr22,24298032,24298340,+,MER47A,DNA,TcMar-Tigger,4,365,-1,24298029,24298341 +6 + chr22 24298340 24298443 chr22,24298340,24298443,+,MER44B,DNA,TcMar-Tigger,446,544,-6,24297895,24298449 +6 + chr22 24298449 24298935 chr22,24298449,24298935,-,MLT2B4,LTR,ERVL,-46,510,1,24298403,24298935 -6 - chr22 24299006 24299260 chr22,24299006,24299260,+,MER20B,DNA,hAT-Charlie,437,721,-62,24298570,24299322 +6 + chr22 24299294 24299443 chr22,24299294,24299443,+,AluJb,SINE,Alu,141,289,-23,24299154,24299466 +6 + chr22 24299706 24299998 chr22,24299706,24299998,-,L1MB8,LINE,L1,0,6178,5889,24299706,24305886 -6 - chr22 24300007 24300054 chr22,24300007,24300733,-,L1PA8A,LINE,L1,0,6131,5395,24300007,24306127 -5 - chr22 24361116 24361418 chr22,24361116,24361418,+,AluJb,SINE,Alu,2,312,0,24361115,24361418 +6 + chr22 24361420 24361462 chr22,24361420,24361462,+,AluYk11,SINE,Alu,1,42,-269,24361420,24361731 +6 + chr22 24361450 24361502 chr22,24361450,24361502,+,AluSz6,SINE,Alu,85,133,-179,24361366,24361681 +6 + chr22 24361505 24361792 chr22,24361505,24361792,+,AluJb,SINE,Alu,2,279,-33,24361504,24361825 +6 + chr22 24361832 24361914 chr22,24361832,24361914,+,GA-rich,Low_complexity,Low_complexity,1,87,0,24361832,24361914 +6 + chr22 24429667 24429732 chr22,24429667,24429732,+,MIR3,SINE,MIR,87,150,-80,24429581,24429812 -6 + chr22 24429893 24430005 chr22,24429893,24430005,+,MER63A,DNA,hAT-Blackjack,39,156,-54,24429855,24430059 -6 + chr22 24430897 24430920 chr22,24430896,24430920,+,(CTG)n,Simple_repeat,Simple_repeat,1,24,0,24430896,24430920 -4 + chr22 24431250 24431287 chr22,24431250,24431287,+,(TTCTGC)n,Simple_repeat,Simple_repeat,1,37,0,24431250,24431287 -6 + chr22 24438372 24438449 chr22,24438372,24438449,+,MIR,SINE,MIR,178,255,-7,24438195,24438456 -6 + chr22 24438637 24438758 chr22,24438637,24438787,+,MIR3,SINE,MIR,22,162,-46,24438616,24438833 -2 + chr22 24439294 24439360 chr22,24439072,24439360,-,AluYc,SINE,Alu,0,299,1,24439072,24439360 +4 - chr22 24452211 24452328 chr22,24452054,24452361,+,AluSg,SINE,Alu,1,306,-4,24452054,24452365 -3 + chr22 24474983 24475060 chr22,24474937,24475060,-,MIRc,SINE,MIR,-123,145,2,24474814,24475061 +4 - chr22 24475100 24475153 chr22,24475100,24475182,+,AluJo,SINE,Alu,229,310,-2,24474872,24475184 -2 + chr22 24516719 24516752 chr22,24516719,24517023,-,AluY,SINE,Alu,-7,304,1,24516712,24517023 -4 - chr22 24518152 24518168 chr22,24517882,24518168,+,AluSx1,SINE,Alu,1,294,-18,24517882,24518186 +2 + chr22 24518168 24518326 chr22,24518168,24518326,+,L1ME4c,LINE,L1,422,591,-239,24517747,24518565 +6 + chr22 24598054 24598076 chr22,24597716,24598076,-,MER21B,LTR,ERVL,-21,847,466,24597695,24598541 -1 - chr22 24598155 24598206 chr22,24598155,24598472,+,AluSx1,SINE,Alu,1,309,-3,24598155,24598475 +4 + chr22 24599364 24599381 chr22,24599364,24599381,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,24599364,24599381 +6 + chr22 25009685 25009883 chr22,25009575,25009883,-,AluSc8,SINE,Alu,-6,305,1,25009569,25009883 +5 - chr22 25010181 25010480 chr22,25010181,25010480,-,AluSx3,SINE,Alu,-13,298,1,25010168,25010480 +6 - chr22 25010501 25010665 chr22,25010501,25010665,-,MIRb,SINE,MIR,-14,254,78,25010487,25010742 +6 - chr22 25010714 25010854 chr22,25010714,25010854,-,MLT1J,LTR,ERVL-MaLR,-4,606,456,25010710,25011309 +6 - chr22 25010986 25011145 chr22,25010986,25011145,-,AluSx1,SINE,Alu,-22,290,137,25010964,25011281 +6 - chr22 25011145 25011450 chr22,25011145,25011450,-,AluSx,SINE,Alu,-15,297,1,25011130,25011450 +6 - chr22 25011450 25011586 chr22,25011450,25011586,-,AluSx1,SINE,Alu,-176,136,1,25011274,25011586 +6 - chr22 25011625 25011935 chr22,25011625,25011935,-,AluSx1,SINE,Alu,0,312,2,25011625,25011936 +6 - chr22 25012021 25012100 chr22,25012021,25012100,-,MLT1J,LTR,ERVL-MaLR,-403,159,88,25011618,25012187 +6 - chr22 25012262 25012572 chr22,25012262,25012572,-,AluSx,SINE,Alu,0,312,1,25012262,25012572 +6 - chr22 25012730 25012828 chr22,25012730,25012828,-,MER113,DNA,hAT-Charlie,-273,248,153,25012457,25012980 +6 - chr22 25013160 25013299 chr22,25013160,25013299,-,L2c,LINE,L2,-217,3170,3036,25012943,25016334 +6 - chr22 25014005 25014282 chr22,25014005,25014282,+,L1M5,LINE,L1,5588,5887,-237,25008418,25014519 -6 + chr22 25014407 25014703 chr22,25014407,25014703,-,AluJr,SINE,Alu,-11,301,2,25014396,25014704 +6 - chr22 25014903 25014996 chr22,25014903,25014996,-,MER58A,DNA,hAT-Charlie,0,224,130,25014903,25015125 +6 - chr22 25015042 25015072 chr22,25015042,25015248,+,AluJr,SINE,Alu,87,303,-9,25014956,25015257 -1 + chr22 25022923 25023219 chr22,25022923,25023219,+,AluSc8,SINE,Alu,1,293,-18,25022923,25023237 -6 + chr22 25023220 25023392 chr22,25023220,25023392,+,AluSx1,SINE,Alu,136,310,-2,25023085,25023394 -6 + chr22 25023672 25023966 chr22,25023672,25023966,+,AluSg,SINE,Alu,1,298,-12,25023672,25023978 -6 + chr22 25023985 25024019 chr22,25023985,25024019,+,(TTCA)n,Simple_repeat,Simple_repeat,1,34,0,25023985,25024019 -6 + chr22 25048967 25049092 chr22,25048938,25049092,-,MIR,SINE,MIR,-92,170,14,25048846,25049105 +5 - chr22 25049607 25049822 chr22,25049607,25049822,+,MIRb,SINE,MIR,11,234,-34,25049597,25049856 -6 + chr22 25049860 25050072 chr22,25049860,25050072,+,MIR,SINE,MIR,21,251,-11,25049840,25050083 -6 + chr22 25050529 25050643 chr22,25050529,25050643,+,MIRb,SINE,MIR,73,187,-81,25050457,25050724 -6 + chr22 25051050 25051090 chr22,25051050,25051090,+,(CCTCTGG)n,Simple_repeat,Simple_repeat,1,42,0,25051050,25051090 -6 + chr22 25051303 25051472 chr22,25051303,25051472,+,MIRc,SINE,MIR,26,204,-64,25051278,25051536 -6 + chr22 25051533 25051625 chr22,25051533,25051625,+,(CCTTT)n,Simple_repeat,Simple_repeat,1,95,0,25051533,25051625 -6 + chr22 25051630 25051758 chr22,25051630,25051758,-,MIR3,SINE,MIR,-46,162,18,25051584,25051775 +6 - chr22 25051918 25051966 chr22,25051918,25052062,-,MIRb,SINE,MIR,-77,185,33,25051841,25052094 +1 - chr22 25052335 25052447 chr22,25052335,25052447,+,MIR,SINE,MIR,44,157,-105,25052292,25052552 -6 + chr22 25052484 25052560 chr22,25052484,25052560,-,MIR,SINE,MIR,-100,162,87,25052384,25052646 +6 - chr22 25052641 25052716 chr22,25052641,25052716,+,MIRb,SINE,MIR,190,263,-5,25052452,25052721 -6 + chr22 25052716 25053014 chr22,25052716,25053014,-,AluSz6,SINE,Alu,-12,300,2,25052704,25053015 +6 - chr22 25053110 25053228 chr22,25053110,25053228,-,MIR3,SINE,MIR,-67,141,21,25053043,25053248 +6 - chr22 25053804 25053887 chr22,25053804,25053887,-,L2c,LINE,L2,-2,3424,3335,25053802,25057221 +6 - chr22 25053906 25054262 chr22,25053906,25054262,+,AluSx,SINE,Alu,1,294,-18,25053906,25054280 -6 + chr22 25054312 25054460 chr22,25054312,25054460,-,MLT1B,LTR,ERVL-MaLR,-49,341,188,25054263,25054647 +6 - chr22 25054510 25054659 chr22,25054510,25054659,-,MER21B,LTR,ERVL,-375,493,325,25054135,25054983 +6 - chr22 25054660 25054714 chr22,25054660,25054714,-,MIRb,SINE,MIR,-8,260,207,25054652,25054920 +6 - chr22 25054811 25054927 chr22,25054811,25054927,-,L2c,LINE,L2,-257,3130,3024,25054554,25057950 +6 - chr22 25055323 25055439 chr22,25055323,25055439,+,Tigger8,DNA,TcMar-Tigger,410,524,-143,25054914,25055582 -6 + chr22 25055440 25055574 chr22,25055440,25055574,+,AluJr,SINE,Alu,1,131,-181,25055440,25055755 -6 + chr22 25055595 25055765 chr22,25055595,25055765,-,L1M4,LINE,L1,-736,5447,5277,25054859,25061041 +6 - chr22 25055789 25055856 chr22,25055789,25055856,+,(ATAGAT)n,Simple_repeat,Simple_repeat,1,71,0,25055789,25055856 -6 + chr22 25055877 25056165 chr22,25055877,25056165,-,AluJb,SINE,Alu,-31,281,3,25055846,25056167 +6 - chr22 25056165 25056336 chr22,25056165,25056336,-,L1M4,LINE,L1,-874,5272,5113,25055291,25061448 +6 - chr22 25056377 25056536 chr22,25056377,25056536,+,MIR,SINE,MIR,20,182,-80,25056358,25056616 -6 + chr22 25056536 25056833 chr22,25056536,25056833,+,AluSc5,SINE,Alu,1,301,-8,25056536,25056841 -6 + chr22 25056833 25056922 chr22,25056833,25056922,+,MIR,SINE,MIR,183,262,0,25056651,25056922 -6 + chr22 25056940 25057000 chr22,25056940,25057000,-,MIRb,SINE,MIR,-19,249,185,25056921,25057184 +6 - chr22 25057089 25057209 chr22,25057089,25057209,-,MIRb,SINE,MIR,-114,154,30,25056975,25057238 +6 - chr22 25057565 25057626 chr22,25057565,25057626,-,MIR3,SINE,MIR,-73,157,93,25057492,25057718 +6 - chr22 25057643 25057940 chr22,25057643,25057940,-,AluJo,SINE,Alu,-11,301,1,25057632,25057940 +6 - chr22 25058099 25058198 chr22,25058099,25058198,+,MER5B,DNA,hAT-Charlie,33,133,-45,25058067,25058243 -6 + chr22 25058198 25058525 chr22,25058198,25058525,-,L1MC3,LINE,L1,-8,7987,7564,25058190,25066088 +6 - chr22 25058657 25058903 chr22,25058657,25058903,-,MLT1G,LTR,ERVL-MaLR,0,595,279,25058657,25059181 +6 - chr22 25058914 25059182 chr22,25058914,25059182,+,L2c,LINE,L2,3120,3381,-6,25055795,25059188 -6 + chr22 25059184 25059501 chr22,25059184,25059501,+,AluSx1,SINE,Alu,1,302,-10,25059184,25059511 -6 + chr22 25059522 25059743 chr22,25059522,25059743,-,L2b,LINE,L2,-108,3267,3024,25059414,25062766 +6 - chr22 25060174 25060481 chr22,25060174,25060481,-,AluSx,SINE,Alu,-4,308,1,25060170,25060481 +6 - chr22 25060572 25060746 chr22,25060572,25060746,-,MIRb,SINE,MIR,-58,210,1,25060514,25060746 +6 - chr22 25061297 25061491 chr22,25061297,25061491,+,L2b,LINE,L2,3104,3324,-51,25058194,25061542 -6 + chr22 25061500 25061749 chr22,25061500,25061749,-,MIRb,SINE,MIR,-6,262,28,25061494,25061776 +6 - chr22 25061912 25062047 chr22,25061912,25062047,+,(CTC)n,Simple_repeat,Simple_repeat,1,135,0,25061912,25062047 -6 + chr22 25062047 25062186 chr22,25062047,25062186,-,FLAM_C,SINE,Alu,-10,133,1,25062037,25062186 +6 - chr22 25062186 25062290 chr22,25062186,25062290,+,(CTC)n,Simple_repeat,Simple_repeat,1,103,0,25062186,25062290 -6 + chr22 25062290 25062643 chr22,25062290,25062643,-,L1MB7,LINE,L1,-10,6174,5816,25062280,25068458 +6 - chr22 25062796 25062842 chr22,25062796,25062842,+,(CCACCCG)n,Simple_repeat,Simple_repeat,1,47,0,25062796,25062842 -6 + chr22 25063044 25063330 chr22,25063044,25063330,-,MER41D,LTR,ERV1,0,557,276,25063044,25063605 +6 - chr22 25063330 25063717 chr22,25063330,25063717,+,L1PB2,LINE,L1,5768,6150,-1,25057563,25063718 -6 + chr22 25063717 25064005 chr22,25063717,25064005,-,MER41D,LTR,ERV1,-282,275,1,25063435,25064005 +6 - chr22 25064033 25064359 chr22,25064033,25064359,-,AluSz,SINE,Alu,0,312,2,25064033,25064360 +6 - chr22 25064361 25064513 chr22,25064361,25064513,-,MIR,SINE,MIR,-10,252,95,25064351,25064607 +6 - chr22 25064829 25064946 chr22,25064829,25064946,-,L2b,LINE,L2,-16,3359,3239,25064813,25068184 +6 - chr22 25065043 25065119 chr22,25065043,25065119,-,L2b,LINE,L2,-304,3083,3005,25064739,25068123 +6 - chr22 25102433 25102742 chr22,25102432,25102742,-,AluSz,SINE,Alu,-2,310,1,25102430,25102742 +5 - chr22 25102742 25102852 chr22,25102742,25102852,-,MIRb,SINE,MIR,-16,252,121,25102726,25102972 +6 - chr22 25110001 25110118 chr22,25109835,25110145,+,AluJb,SINE,Alu,1,302,-10,25109835,25110155 -3 + chr22 25212742 25212840 chr22,25212608,25212846,+,LTR16C,LTR,ERVL,1,256,-233,25212608,25213079 +1 + chr22 25213378 25213685 chr22,25213378,25213700,-,MLT1I,LTR,ERVL-MaLR,0,549,79,25213378,25213778 -5 - chr22 25251523 25251715 chr22,25251403,25251715,-,AluJb,SINE,Alu,0,312,1,25251403,25251715 +5 - chr22 25251715 25252094 chr22,25251715,25252094,-,L1MB5,LINE,L1,-1193,4953,4510,25250522,25256603 +6 - chr22 25252094 25252409 chr22,25252094,25252409,-,AluSx1,SINE,Alu,0,312,1,25252094,25252409 +6 - chr22 25252409 25252602 chr22,25252409,25252702,-,L1MB5,LINE,L1,-1637,4509,4214,25250772,25256915 +1 - chr22 25476218 25476491 chr22,25476183,25476491,-,AluSp,SINE,Alu,-8,305,1,25476175,25476491 -1 - chr22 25476660 25476722 chr22,25476660,25476722,-,MIR3,SINE,MIR,-17,191,123,25476643,25476844 -6 - chr22 25476773 25477002 chr22,25476773,25477002,-,MIRb,SINE,MIR,-35,233,6,25476738,25477007 -6 - chr22 25477318 25477526 chr22,25477318,25477526,-,MIRb,SINE,MIR,-28,240,34,25477290,25477559 -6 - chr22 25477535 25477979 chr22,25477535,25477979,-,MLT1H,LTR,ERVL-MaLR,-2,442,15,25477533,25477993 -6 - chr22 25477994 25478518 chr22,25477994,25478518,+,MLT1F1,LTR,ERVL-MaLR,1,560,-9,25477994,25478527 +6 + chr22 25478938 25478971 chr22,25478938,25478971,-,L2c,LINE,L2,-21,3366,3334,25478917,25482304 -6 - chr22 25479044 25479245 chr22,25479044,25479245,+,MIRc,SINE,MIR,2,195,-73,25479043,25479318 +6 + chr22 25479295 25479353 chr22,25479295,25479353,+,MLT1K,LTR,ERVL-MaLR,194,250,-345,25479102,25479698 +6 + chr22 25479469 25479529 chr22,25479469,25479529,+,MLT1K,LTR,ERVL-MaLR,415,482,-113,25479055,25479642 +6 + chr22 25479586 25479971 chr22,25479586,25480084,-,Tigger1,DNA,TcMar-Tigger,0,2418,1897,25479586,25481980 -5 - chr22 25580241 25580531 chr22,25579771,25580531,+,L1MC5a,LINE,L1,1843,2609,-168,25577929,25580699 -5 + chr22 25580548 25580584 chr22,25580548,25580777,-,AluSq2,SINE,Alu,-28,285,58,25580520,25580834 +2 - chr22 25581067 25581143 chr22,25580843,25581143,+,AluJr,SINE,Alu,2,311,-1,25580842,25581144 -4 + chr22 25581240 25581382 chr22,25581240,25581564,+,Kanga2_a,DNA,TcMar-Tc2,305,636,-252,25580936,25581816 -1 + chr22 25756440 25756636 chr22,25756440,25756636,-,MER63A,DNA,hAT-Blackjack,-1,209,4,25756439,25756639 +6 - chr22 25883396 25883533 chr22,25883356,25883533,-,MER5A,DNA,hAT-Charlie,0,189,8,25883356,25883540 +5 - chr22 25884745 25884883 chr22,25884745,25884937,+,MIR,SINE,MIR,36,238,-24,25884710,25884961 -5 + chr22 25894944 25895006 chr22,25894944,25895006,-,L2a,LINE,L2,-220,3167,3109,25894724,25898114 +6 - chr22 25895507 25895586 chr22,25895507,25895586,+,MIR3,SINE,MIR,21,112,-96,25895487,25895682 -6 + chr22 25895627 25895643 chr22,25895627,25895759,+,L2b,LINE,L2,2658,2796,-623,25892970,25896382 -1 + chr22 25896273 25896438 chr22,25895938,25896438,-,L1MEd,LINE,L1,-6348,738,238,25889590,25896675 +4 - chr22 25896587 25896629 chr22,25896587,25896629,+,(AATCT)n,Simple_repeat,Simple_repeat,1,42,0,25896587,25896629 -6 + chr22 25896729 25896847 chr22,25896729,25896936,-,MER63A,DNA,hAT-Blackjack,-1,209,1,25896728,25896936 +1 - chr22 25896996 25897274 chr22,25896938,25897274,+,L2b,LINE,L2,2976,3339,-48,25893963,25897322 -4 + chr22 25898659 25898756 chr22,25898659,25898756,+,MIR3,SINE,MIR,56,152,-56,25898604,25898812 -1 + chr22 25898767 25898961 chr22,25898767,25898961,+,MIRb,SINE,MIR,2,205,-57,25898766,25899018 -5 + chr22 25899737 25899796 chr22,25899737,25899796,+,MIR3,SINE,MIR,57,120,-88,25899681,25899884 -6 + chr22 25900893 25901010 chr22,25900893,25901010,+,MIRb,SINE,MIR,73,194,-74,25900821,25901084 -1 + chr22 25959123 25959265 chr22,25959123,25959265,+,MamTip2,DNA,hAT-Tip100,9,173,-132,25959115,25959397 -6 + chr22 25959265 25959323 chr22,25959265,25959573,-,AluJr,SINE,Alu,-4,308,1,25959261,25959573 +2 - chr22 25983305 25983384 chr22,25983088,25983384,+,AluJr,SINE,Alu,1,296,-16,25983088,25983400 -4 + chr22 25983406 25983494 chr22,25983406,25983494,-,L1ME3A,LINE,L1,-9,6164,6074,25983397,25989567 +6 - chr22 26056289 26056465 chr22,26056289,26056465,-,MIR3,SINE,MIR,-5,203,18,26056284,26056482 -6 - chr22 26057315 26057343 chr22,26057315,26057343,+,(TAA)n,Simple_repeat,Simple_repeat,1,29,0,26057315,26057343 +6 + chr22 26057347 26057485 chr22,26057347,26057485,-,MIRb,SINE,MIR,-16,252,98,26057331,26057582 -6 - chr22 26057702 26057857 chr22,26057702,26057857,-,MIR3,SINE,MIR,-49,159,4,26057653,26057860 -6 - chr22 26057887 26057999 chr22,26057887,26057999,-,MER117,DNA,hAT-Charlie,-1,196,86,26057886,26058084 -6 - chr22 26058499 26058915 chr22,26058499,26058915,+,MSTB1,LTR,ERVL-MaLR,1,432,0,26058499,26058915 +6 + chr22 26059097 26059294 chr22,26059097,26059294,+,LTR89,LTR,ERVL?,683,879,0,26058415,26059294 +6 + chr22 26060129 26060351 chr22,26060129,26060351,+,MER58A,DNA,hAT-Charlie,1,224,0,26060129,26060351 +6 + chr22 26060408 26060566 chr22,26060408,26060566,+,LTR33A_,LTR,ERVL,30,176,-355,26060379,26060921 +6 + chr22 26060570 26061027 chr22,26060570,26061027,+,(AC)n,Simple_repeat,Simple_repeat,1,460,0,26060570,26061027 +6 + chr22 26061029 26061326 chr22,26061029,26061326,+,LTR33A_,LTR,ERVL,216,524,-7,26060814,26061333 +6 + chr22 26061871 26061988 chr22,26061871,26061988,+,MER103C,DNA,hAT-Charlie,48,161,-136,26061824,26062124 +6 + chr22 26062097 26062590 chr22,26062097,26062590,+,MLT1K,LTR,ERVL-MaLR,1,526,-69,26062097,26062659 +6 + chr22 26063374 26063573 chr22,26063374,26063573,-,MIRc,SINE,MIR,-44,224,18,26063330,26063590 -6 - chr22 26064076 26064185 chr22,26064076,26064185,+,L2b,LINE,L2,3238,3351,-24,26060839,26064209 +6 + chr22 26064340 26064394 chr22,26064340,26064394,-,L2c,LINE,L2,-6,3420,3341,26064334,26067734 -6 - chr22 26064443 26064512 chr22,26064443,26064512,+,A-rich,Low_complexity,Low_complexity,1,70,0,26064443,26064512 +6 + chr22 26065203 26065412 chr22,26065203,26065412,-,MER20,DNA,hAT-Charlie,0,219,1,26065203,26065412 -6 - chr22 26065415 26065700 chr22,26065415,26065700,+,AluSc8,SINE,Alu,1,309,-2,26065415,26065702 +6 + chr22 26065774 26065854 chr22,26065774,26065854,+,MLT1K,LTR,ERVL-MaLR,514,595,0,26065261,26065854 +6 + chr22 26066004 26066116 chr22,26066004,26066116,+,MIR3,SINE,MIR,42,160,-48,26065963,26066164 +6 + chr22 26066166 26066420 chr22,26066166,26066420,+,MER102c,DNA,hAT-Charlie,50,324,-7,26066117,26066427 +6 + chr22 26067136 26067214 chr22,26067136,26067214,+,MIRb,SINE,MIR,35,113,-155,26067102,26067369 +6 + chr22 26067245 26067338 chr22,26067245,26067338,+,L2a,LINE,L2,3024,3108,-267,26064222,26067605 +6 + chr22 26067338 26067811 chr22,26067338,26067811,+,LTR16C,LTR,ERVL,4,489,0,26067335,26067811 +6 + chr22 26067811 26068099 chr22,26067811,26068099,+,L2a,LINE,L2,3109,3416,-10,26064703,26068109 +6 + chr22 26068096 26068244 chr22,26068096,26068244,+,MIRb,SINE,MIR,121,251,-17,26067976,26068261 +6 + chr22 26068309 26068479 chr22,26068309,26068479,-,MIRb,SINE,MIR,-75,193,17,26068234,26068495 -6 - chr22 26069500 26069578 chr22,26069500,26069578,-,MER53,DNA,hAT,-27,166,95,26069473,26069672 -6 - chr22 26069575 26069990 chr22,26069575,26069990,+,MSTB1,LTR,ERVL-MaLR,6,432,0,26069570,26069990 +6 + chr22 26069990 26070076 chr22,26069990,26070076,-,MER53,DNA,hAT,-105,88,1,26069885,26070076 -6 - chr22 26070138 26070210 chr22,26070138,26070210,+,MER102c,DNA,hAT-Charlie,51,124,-207,26070088,26070417 +6 + chr22 26070310 26070360 chr22,26070310,26070360,+,Charlie8,DNA,hAT-Charlie,2376,2425,-3,26067935,26070363 +6 + chr22 26070498 26070575 chr22,26070498,26070575,+,MIR1_Amn,SINE,MIR,131,217,-13,26070368,26070588 +6 + chr22 26071582 26072113 chr22,26071582,26072113,+,MER68B,LTR,ERVL,3,555,-9,26071580,26072122 +6 + chr22 26072142 26072352 chr22,26072142,26072352,-,MIRb,SINE,MIR,-19,249,35,26072123,26072386 -6 - chr22 26072742 26072867 chr22,26072742,26072867,+,MIR3,SINE,MIR,66,195,-13,26072677,26072880 +6 + chr22 26073222 26073407 chr22,26073222,26073407,-,MER102c,DNA,hAT-Charlie,-65,265,87,26073157,26073493 -6 - chr22 26073944 26074421 chr22,26073944,26074421,-,LTR33,LTR,ERVL,0,515,37,26073944,26074457 -6 - chr22 26074495 26074594 chr22,26074495,26074594,+,L2c,LINE,L2,3277,3374,-13,26071219,26074607 +6 + chr22 26074812 26075082 chr22,26074812,26075082,+,MER103C,DNA,hAT-Charlie,4,297,0,26074809,26075082 +6 + chr22 26075088 26075132 chr22,26075088,26075132,-,MIR3,SINE,MIR,-54,154,112,26075034,26075243 -6 - chr22 26075099 26075138 chr22,26075099,26075138,-,MIRc,SINE,MIR,-122,146,109,26074977,26075246 -6 - chr22 26075532 26075609 chr22,26075532,26075609,+,L2,LINE,L2,2772,2848,-571,26072761,26076180 +6 + chr22 26075676 26075955 chr22,26075676,26075955,-,AluJb,SINE,Alu,-21,291,15,26075655,26075969 -6 - chr22 26076171 26076418 chr22,26076171,26076418,+,MIRb,SINE,MIR,4,263,-5,26076168,26076423 +6 + chr22 26076485 26076588 chr22,26076485,26076588,+,(ATACAC)n,Simple_repeat,Simple_repeat,1,107,0,26076485,26076588 +6 + chr22 26077756 26078002 chr22,26077756,26078002,-,MIR,SINE,MIR,-5,257,1,26077751,26078002 -6 - chr22 26078008 26078190 chr22,26078008,26078190,-,L2c,LINE,L2,-9,3378,3209,26077999,26081398 -6 - chr22 26078245 26078287 chr22,26078245,26078287,+,(AC)n,Simple_repeat,Simple_repeat,1,42,0,26078245,26078287 +6 + chr22 26078301 26078441 chr22,26078301,26078441,-,MIRb,SINE,MIR,-98,170,13,26078203,26078453 -6 - chr22 26079374 26079502 chr22,26079374,26079502,+,MIRc,SINE,MIR,89,226,-42,26079286,26079544 +6 + chr22 26079514 26079559 chr22,26079514,26079559,+,(TGA)n,Simple_repeat,Simple_repeat,1,45,0,26079514,26079559 +6 + chr22 26079579 26079749 chr22,26079579,26079749,-,MIR,SINE,MIR,-16,246,76,26079563,26079824 -6 - chr22 26080075 26080220 chr22,26080075,26080220,+,L2a,LINE,L2,2956,3113,-274,26077120,26080494 +6 + chr22 26080567 26080731 chr22,26080567,26080731,+,MIRb,SINE,MIR,9,176,-92,26080559,26080823 +6 + chr22 26080741 26080878 chr22,26080741,26080878,+,L1M5,LINE,L1,5720,5872,-572,26075022,26081450 +6 + chr22 26080860 26081037 chr22,26080860,26081037,+,L1ME3E,LINE,L1,5789,5961,-281,26075072,26081318 +6 + chr22 26081037 26081295 chr22,26081037,26081295,+,MIR,SINE,MIR,1,262,0,26081037,26081295 +6 + chr22 26081295 26081560 chr22,26081295,26081560,+,L1ME3E,LINE,L1,5962,6230,-12,26075334,26081572 +6 + chr22 26082118 26082311 chr22,26082118,26082311,-,MIRb,SINE,MIR,-15,253,60,26082103,26082370 -6 - chr22 26082322 26082464 chr22,26082322,26082464,-,MIRb,SINE,MIR,-57,211,71,26082265,26082534 -6 - chr22 26082935 26083116 chr22,26082935,26083116,+,L2a,LINE,L2,3191,3426,0,26079745,26083116 +6 + chr22 26083189 26083264 chr22,26083189,26083264,-,L2a,LINE,L2,-107,3319,3245,26083082,26086508 -6 - chr22 26083280 26083555 chr22,26083280,26083555,-,LTR16C,LTR,ERVL,-3,486,207,26083277,26083761 -6 - chr22 26083580 26085453 chr22,26083580,26085453,-,L2a,LINE,L2,-232,3194,1141,26083348,26086593 -6 - chr22 26085509 26085539 chr22,26085509,26085539,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,26085509,26085539 +6 + chr22 26085564 26085732 chr22,26085564,26085732,+,MamRep564,Unknown,Unknown,93,247,-110,26085472,26085842 +6 + chr22 26086398 26086468 chr22,26086398,26086468,+,MER117,DNA,hAT-Charlie,123,192,-5,26086276,26086473 +6 + chr22 26086496 26086565 chr22,26086496,26086565,+,MER117,DNA,hAT-Charlie,124,192,-5,26086373,26086570 +6 + chr22 26086737 26086771 chr22,26086737,26086771,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,26086737,26086771 +6 + chr22 26086929 26087136 chr22,26086929,26087136,-,MIRb,SINE,MIR,-30,238,35,26086899,26087170 -6 - chr22 26087194 26087316 chr22,26087194,26087316,+,MIR3,SINE,MIR,49,168,-40,26087146,26087356 +6 + chr22 26087380 26087493 chr22,26087380,26087493,+,Charlie15a,DNA,hAT-Charlie,105,221,-3,26087276,26087496 +6 + chr22 26087502 26087725 chr22,26087502,26087725,-,MIRb,SINE,MIR,-1,267,32,26087501,26087756 -6 - chr22 26162229 26162282 chr22,26162147,26162298,+,MIRc,SINE,MIR,3,152,-116,26162145,26162414 -3 + chr22 26242752 26242847 chr22,26242742,26242847,-,L2a,LINE,L2,-1,3425,3300,26242741,26246146 +4 - chr22 26253974 26254092 chr22,26253919,26254314,+,L1ME4c,LINE,L1,45,453,-377,26253875,26254691 -1 + chr22 26390740 26390782 chr22,26390654,26390782,-,5S,rRNA,rRNA,0,121,4,26390654,26390785 +5 - chr22 26392034 26392159 chr22,26392034,26392159,+,AluSz,SINE,Alu,2,126,-186,26392033,26392345 -6 + chr22 26392161 26392471 chr22,26392161,26392471,+,AluSx1,SINE,Alu,2,312,0,26392160,26392471 -6 + chr22 26392863 26393156 chr22,26392863,26393156,-,AluSp,SINE,Alu,-19,294,1,26392844,26393156 +6 - chr22 26393169 26393232 chr22,26393169,26393232,+,(TA)n,Simple_repeat,Simple_repeat,1,64,0,26393169,26393232 -6 + chr22 26393232 26393570 chr22,26393232,26393570,+,Tigger3a,DNA,TcMar-Tigger,1,347,-1,26393232,26393571 -6 + chr22 26393636 26393676 chr22,26393636,26393676,+,(TGTAGCA)n,Simple_repeat,Simple_repeat,1,40,0,26393636,26393676 -6 + chr22 26393693 26394086 chr22,26393693,26394086,-,L2c,LINE,L2,-35,3352,2916,26393658,26397001 +6 - chr22 26394347 26394501 chr22,26394347,26394501,+,AluJo,SINE,Alu,135,288,-24,26394213,26394525 -6 + chr22 26394511 26394823 chr22,26394511,26394823,+,AluSx1,SINE,Alu,1,309,-3,26394511,26394826 -6 + chr22 26512711 26512836 chr22,26512711,26512836,+,MIR,SINE,MIR,80,218,-44,26512632,26512880 +6 + chr22 26513054 26513164 chr22,26513054,26513164,-,L2b,LINE,L2,0,3375,3254,26513054,26516417 -6 - chr22 26513193 26513368 chr22,26513193,26513368,+,MIRb,SINE,MIR,46,266,-2,26513148,26513370 +6 + chr22 26513417 26513472 chr22,26513417,26513472,+,MIRc,SINE,MIR,2,57,-211,26513416,26513683 +6 + chr22 26513517 26513626 chr22,26513517,26513626,+,L2a,LINE,L2,3299,3406,-20,26510219,26513646 +6 + chr22 26513973 26514490 chr22,26513973,26514490,+,L1MC4,LINE,L1,7365,7899,-143,26506609,26514633 +6 + chr22 26514539 26514568 chr22,26514539,26514757,+,MIR,SINE,MIR,31,248,-14,26514509,26514771 +5 + chr22 26522040 26522302 chr22,26522040,26522302,-,MIRb,SINE,MIR,-5,263,32,26522035,26522333 +6 - chr22 26522541 26522798 chr22,26522541,26522798,+,L1ME3G,LINE,L1,338,607,-317,26522204,26523115 -6 + chr22 26522798 26523017 chr22,26522798,26523017,+,AluJo,SINE,Alu,2,239,-73,26522797,26523090 -6 + chr22 26523112 26523208 chr22,26523112,26523208,+,AluJo,SINE,Alu,207,302,-10,26522906,26523218 -6 + chr22 26523573 26523882 chr22,26523573,26523882,-,AluSx,SINE,Alu,-1,311,1,26523572,26523882 +6 - chr22 26524310 26524508 chr22,26524310,26524508,+,AluJr,SINE,Alu,86,284,-28,26524225,26524536 -6 + chr22 26524508 26524531 chr22,26524508,26524531,+,(CA)n,Simple_repeat,Simple_repeat,1,23,0,26524508,26524531 -6 + chr22 26524535 26524579 chr22,26524535,26524579,-,MIRc,SINE,MIR,-107,161,118,26524428,26524696 +6 - chr22 26524762 26525036 chr22,26524762,26525224,+,MER77,LTR,ERVL,1,468,-136,26524762,26525360 -1 + chr22 26646558 26646753 chr22,26646558,26646753,+,MIRb,SINE,MIR,32,268,0,26646527,26646753 +1 + chr22 26646780 26646959 chr22,26646780,26647058,+,LTR85c,LTR,Gypsy?,507,796,-27,26646274,26647085 +4 + chr22 26647225 26647340 chr22,26647225,26647366,-,L2b,LINE,L2,-2,3373,3235,26647223,26650600 -1 - chr22 26656032 26656154 chr22,26655998,26656314,-,AluSp,SINE,Alu,0,313,1,26655998,26656314 -3 - chr22 26658248 26658339 chr22,26658248,26658460,-,MIRb,SINE,MIR,0,268,29,26658248,26658488 -4 - chr22 26660771 26660816 chr22,26660771,26660961,+,MIRb,SINE,MIR,7,207,-61,26660765,26661022 +4 + chr22 26666496 26666590 chr22,26666496,26666590,-,MIR1_Amn,SINE,MIR,-130,100,8,26666366,26666597 -6 - chr22 26667185 26667265 chr22,26667161,26667265,-,L2c,LINE,L2,-5,3382,3273,26667156,26670537 -2 - chr22 26667693 26667970 chr22,26667677,26667970,-,AluJb,SINE,Alu,-11,301,1,26667666,26667970 +5 - chr22 26669251 26669438 chr22,26669251,26669643,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,26669249,26669643 +2 - chr22 26669251 26669643 chr22,26669251,26669643,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,26669249,26669643 -6 - chr22 26669862 26670017 chr22,26669862,26670017,+,MIRb,SINE,MIR,81,254,-14,26669782,26670031 +6 + chr22 26670249 26670308 chr22,26670249,26670308,-,L2b,LINE,L2,-23,3352,3296,26670226,26673603 -6 - chr22 26670602 26670626 chr22,26670602,26670626,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,26670602,26670626 +6 + chr22 26670662 26670784 chr22,26670662,26670784,+,MER103C,DNA,hAT-Charlie,132,254,-43,26670531,26670827 +6 + chr22 26671678 26671835 chr22,26671676,26671835,+,MIRb,SINE,MIR,61,236,-26,26671616,26671861 -4 + chr22 26671676 26671835 chr22,26671676,26671835,+,MIRb,SINE,MIR,61,236,-26,26671616,26671861 +6 + chr22 26674833 26674990 chr22,26674833,26674990,-,L2a,LINE,L2,-25,3401,3180,26674808,26678169 -6 - chr22 26675006 26675241 chr22,26675006,26675241,-,L2a,LINE,L2,-16,3410,3053,26674990,26678293 -6 - chr22 26693807 26693836 chr22,26693807,26693978,+,MIRb,SINE,MIR,11,187,-81,26693797,26694059 +4 + chr22 26711901 26712008 chr22,26711901,26712076,-,MIRc,SINE,MIR,-77,191,11,26711824,26712086 -4 - chr22 26718140 26718253 chr22,26717950,26718253,-,AluJb,SINE,Alu,-19,293,1,26717931,26718253 -2 - chr22 26721650 26721830 chr22,26721609,26721830,+,MER20,DNA,hAT-Charlie,1,219,0,26721609,26721830 +2 + chr22 26721908 26721943 chr22,26721908,26721943,-,L3,LINE,CR1,-117,3982,3948,26721791,26725890 -6 - chr22 26721922 26722158 chr22,26721922,26722158,+,MIRb,SINE,MIR,18,254,-14,26721905,26722172 +6 + chr22 26738107 26738240 chr22,26738107,26738261,+,MER5B,DNA,hAT-Charlie,7,163,-15,26738101,26738276 +4 + chr22 26742739 26742838 chr22,26742567,26742868,+,AluSz,SINE,Alu,1,312,0,26742567,26742868 +5 + chr22 26774156 26774217 chr22,26773872,26774303,-,LTR33B,LTR,ERVL,0,503,14,26773872,26774316 -3 - chr22 26778456 26778635 chr22,26778326,26778769,+,MLT1F,LTR,ERVL-MaLR,76,548,0,26778251,26778769 +5 + chr22 26779884 26780146 chr22,26779652,26780146,+,MLT1H,LTR,ERVL-MaLR,18,549,0,26779635,26780146 +2 + chr22 26859307 26859478 chr22,26859307,26859478,+,L2b,LINE,L2,2650,2838,-581,26856658,26860059 +6 + chr22 26859519 26859715 chr22,26859519,26859715,+,L2b,LINE,L2,2945,3164,-211,26856575,26859926 +6 + chr22 26859761 26859922 chr22,26859761,26859922,+,AluJo,SINE,Alu,135,297,-15,26859627,26859937 +6 + chr22 26859924 26860207 chr22,26859924,26860207,+,AluJb,SINE,Alu,1,286,-26,26859924,26860233 +6 + chr22 26860295 26860755 chr22,26860295,26860755,+,LTR12_,LTR,ERV1,1,456,-232,26860295,26860987 +6 + chr22 26860791 26860828 chr22,26860791,26860828,+,(TTTC)n,Simple_repeat,Simple_repeat,1,37,0,26860791,26860828 +6 + chr22 26860850 26861022 chr22,26860850,26861100,-,AluSx3,SINE,Alu,-2,309,60,26860848,26861159 -4 - chr22 26863318 26863378 chr22,26863318,26863378,-,MIRb,SINE,MIR,-8,260,201,26863310,26863578 -6 - chr22 26863383 26863415 chr22,26863383,26863415,+,(TTATT)n,Simple_repeat,Simple_repeat,1,32,0,26863383,26863415 +6 + chr22 26863429 26863740 chr22,26863429,26863740,-,L1PA7,LINE,L1,-4,6150,5840,26863425,26869579 -6 - chr22 26863742 26863924 chr22,26863742,26863924,+,L1PA7,LINE,L1,5629,5810,-344,26858114,26864268 +6 + chr22 26863929 26864072 chr22,26863929,26864072,-,MIR,SINE,MIR,-70,192,46,26863859,26864117 -6 - chr22 26864377 26864628 chr22,26864377,26864628,+,MIR,SINE,MIR,2,262,0,26864376,26864628 +6 + chr22 26864786 26865786 chr22,26864786,26866511,-,L1MA7,LINE,L1,0,6291,4498,26864786,26871008 -5 - chr22 26906734 26906767 chr22,26906734,26906802,+,L2b,LINE,L2,3307,3375,0,26903428,26906802 +4 + chr22 26907935 26908050 chr22,26907913,26908050,-,FLAM_C,SINE,Alu,-10,133,1,26907903,26908050 -2 - chr22 26908051 26908113 chr22,26908051,26908140,-,MER2,DNA,TcMar-Tigger,-256,89,1,26907795,26908140 -5 - chr22 26920576 26920611 chr22,26920576,26920639,+,MIRb,SINE,MIR,14,77,-191,26920563,26920830 +5 + chr22 27019369 27019419 chr22,27019300,27019419,-,MIRc,SINE,MIR,-27,241,103,27019273,27019521 -1 - chr22 27019456 27019735 chr22,27019456,27019735,-,L1MC4,LINE,L1,-4986,1229,942,27014470,27020676 -6 - chr22 27019916 27020068 chr22,27019916,27020068,+,L2,LINE,L2,2757,2913,-506,27017160,27020574 +6 + chr22 27020279 27020582 chr22,27020279,27020582,+,GA-rich,Low_complexity,Low_complexity,1,315,0,27020279,27020582 +6 + chr22 27021345 27021527 chr22,27021345,27021527,+,MER5A,DNA,hAT-Charlie,1,189,0,27021345,27021527 +6 + chr22 27021527 27021684 chr22,27021527,27021684,+,MIR,SINE,MIR,25,184,-78,27021503,27021762 +6 + chr22 27021828 27021977 chr22,27021828,27021977,-,MER5A1,DNA,hAT-Charlie,0,166,12,27021828,27021988 -6 - chr22 27022811 27022913 chr22,27022811,27022913,+,(CACA)n,Simple_repeat,Simple_repeat,1,102,0,27022811,27022913 +6 + chr22 27023540 27023567 chr22,27023540,27023567,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,27023540,27023567 +6 + chr22 27024462 27024550 chr22,27024462,27025149,-,L1ME3,LINE,L1,-1,6161,5452,27024461,27030600 -5 - chr22 27040274 27040405 chr22,27040274,27040405,+,MIR,SINE,MIR,66,195,-67,27040209,27040472 +6 + chr22 27040682 27040894 chr22,27040682,27040894,+,MIRb,SINE,MIR,8,222,-46,27040675,27040940 +6 + chr22 27040994 27041048 chr22,27040994,27041048,+,(TA)n,Simple_repeat,Simple_repeat,1,54,0,27040994,27041048 +6 + chr22 27041048 27041117 chr22,27041048,27041117,+,MamRep564,Unknown,Unknown,210,280,-77,27040839,27041194 +6 + chr22 27041207 27041421 chr22,27041207,27041421,+,AluY,SINE,Alu,83,293,-18,27041125,27041439 +6 + chr22 27044001 27044098 chr22,27043867,27044098,+,(TCTT)n,Simple_repeat,Simple_repeat,1,231,0,27043867,27044098 +1 + chr22 27044786 27045009 chr22,27044786,27045009,-,MIRb,SINE,MIR,0,268,47,27044786,27045055 -6 - chr22 27045093 27045136 chr22,27045093,27045136,-,MER5A1,DNA,hAT-Charlie,-114,52,10,27044979,27045145 -6 - chr22 27048144 27048155 chr22,27048116,27048155,+,MIR,SINE,MIR,224,262,0,27047893,27048155 -5 + chr22 27048145 27048374 chr22,27048145,27048374,-,MIRb,SINE,MIR,-8,260,17,27048137,27048390 +6 - chr22 27048485 27048700 chr22,27048485,27048700,+,MIRb,SINE,MIR,2,261,-7,27048484,27048707 -6 + chr22 27048988 27049115 chr22,27048988,27049115,-,L2c,LINE,L2,0,3387,3253,27048988,27052367 +6 - chr22 27049115 27049222 chr22,27049115,27049222,-,MER5A,DNA,hAT-Charlie,-5,184,54,27049110,27049275 +6 - chr22 27049356 27049493 chr22,27049356,27049493,+,L2b,LINE,L2,3019,3173,-202,27046338,27049695 -6 + chr22 27049544 27049738 chr22,27049544,27049738,+,Tigger3d,DNA,TcMar-Tigger,1,195,-126,27049544,27049864 -6 + chr22 27049738 27049815 chr22,27049738,27049815,+,MADE1,DNA,TcMar-Mariner,1,80,0,27049738,27049815 -6 + chr22 27049834 27049951 chr22,27049834,27049951,+,Tigger3d,DNA,TcMar-Tigger,203,321,0,27049632,27049951 -6 + chr22 27049961 27050055 chr22,27049961,27050055,+,L2b,LINE,L2,3225,3319,-56,27046737,27050111 -6 + chr22 27050095 27050116 chr22,27050095,27050145,-,Charlie4z,DNA,hAT-Charlie,-108,59,10,27049987,27050154 +2 - chr22 27102766 27102857 chr22,27102686,27102857,+,L2b,LINE,L2,3021,3193,-182,27099666,27103039 +1 + chr22 27102888 27102928 chr22,27102888,27102928,+,L2c,LINE,L2,3339,3380,-7,27099550,27102935 +6 + chr22 27103076 27103117 chr22,27103076,27103117,+,L2b,LINE,L2,3317,3358,-17,27099760,27103134 +6 + chr22 27103513 27103573 chr22,27103513,27103573,+,L2b,LINE,L2,3102,3161,-226,27100412,27103799 +6 + chr22 27103610 27103857 chr22,27103610,27103857,+,MIR,SINE,MIR,2,262,0,27103609,27103857 +6 + chr22 27104405 27104470 chr22,27104405,27104470,+,(TTTTTCT)n,Simple_repeat,Simple_repeat,1,67,0,27104405,27104470 +6 + chr22 27104470 27104503 chr22,27104470,27104503,+,(CTTT)n,Simple_repeat,Simple_repeat,2,102,0,27104469,27104503 +6 + chr22 27104504 27104786 chr22,27104504,27104786,-,L1MA8,LINE,L1,-4,6287,6007,27104500,27110792 -6 - chr22 27104812 27105194 chr22,27104812,27105194,-,L1ME4b,LINE,L1,-22,870,463,27104790,27105656 -6 - chr22 27105204 27105333 chr22,27105204,27105333,+,L2b,LINE,L2,3237,3364,-11,27101968,27105344 +6 + chr22 27105333 27105511 chr22,27105333,27105511,+,(GATG)n,Simple_repeat,Simple_repeat,1,180,0,27105333,27105511 +6 + chr22 27106126 27106254 chr22,27106126,27106254,-,MER102b,DNA,hAT-Charlie,-210,131,1,27105916,27106254 -6 - chr22 27106520 27106729 chr22,27106520,27106729,+,MIR,SINE,MIR,12,227,-35,27106509,27106764 +6 + chr22 27106874 27107011 chr22,27106874,27107011,-,MIRb,SINE,MIR,-113,155,24,27106761,27107034 -6 - chr22 27143478 27143529 chr22,27143381,27143589,+,LTR33,LTR,ERVL,23,244,-271,27143359,27143860 +1 + chr22 27159458 27159684 chr22,27159295,27159684,+,MLT1B,LTR,ERVL-MaLR,1,383,-7,27159295,27159691 +2 + chr22 27204969 27205050 chr22,27204722,27205050,+,MLT1J,LTR,ERVL-MaLR,1,328,-184,27204722,27205234 +2 + chr22 27221427 27221701 chr22,27221427,27221735,+,AluSc,SINE,Alu,2,308,-1,27221426,27221736 -2 + chr22 27223297 27223327 chr22,27223172,27223327,-,L2a,LINE,L2,-21,3405,3183,27223151,27226509 +5 - chr22 27223327 27223634 chr22,27223327,27223843,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,27223327,27223843 +2 - chr22 27224230 27224288 chr22,27224088,27224288,-,MIR,SINE,MIR,-29,239,26,27224059,27224313 +4 - chr22 27276240 27276344 chr22,27276046,27276390,+,MSTB1,LTR,ERVL-MaLR,1,428,-37,27276046,27276427 +1 + chr22 27310837 27310870 chr22,27310837,27310870,+,(AAC)n,Simple_repeat,Simple_repeat,1,33,0,27310837,27310870 +6 + chr22 27310873 27311069 chr22,27310873,27311069,-,MIRb,SINE,MIR,-2,266,65,27310871,27311133 -6 - chr22 27312516 27312991 chr22,27312516,27312991,+,(CA)n,Simple_repeat,Simple_repeat,1,478,0,27312516,27312991 +6 + chr22 27313904 27313974 chr22,27313904,27313974,-,L2a,LINE,L2,0,3387,3320,27313904,27317293 -6 - chr22 27314029 27314189 chr22,27314029,27314189,+,MIRb,SINE,MIR,101,268,0,27313929,27314189 +6 + chr22 27314354 27314482 chr22,27314354,27314482,-,L2a,LINE,L2,-80,3346,3210,27314274,27317691 -6 - chr22 27314767 27315049 chr22,27314767,27315129,-,L2b,LINE,L2,-15,3360,3035,27314752,27318163 -4 - chr22 27316943 27317047 chr22,27316943,27317047,+,MIRb,SINE,MIR,46,153,-115,27316898,27317162 +6 + chr22 27317049 27317456 chr22,27317049,27317494,+,MLT1C,LTR,ERVL-MaLR,1,457,-10,27317049,27317504 +5 + chr22 27331787 27331854 chr22,27331341,27331854,-,LTR33,LTR,ERVL,0,515,9,27331341,27331862 -1 - chr22 27335181 27335313 chr22,27335181,27335313,+,MLT1I,LTR,ERVL-MaLR,132,264,-147,27335050,27335460 +6 + chr22 27335313 27335330 chr22,27335313,27335490,+,MER45A,DNA,hAT-Tip100,1,177,-1,27335313,27335491 +4 + chr22 27353442 27353551 chr22,27353228,27353551,-,MLT1B,LTR,ERVL-MaLR,-14,453,95,27353214,27353645 -1 - chr22 27353551 27353843 chr22,27353551,27353843,-,AluJo,SINE,Alu,-26,286,2,27353525,27353844 -6 - chr22 27353853 27354055 chr22,27353853,27354055,-,L1PREC2,LINE,L1,0,6160,5959,27353853,27360013 -6 - chr22 27354055 27354163 chr22,27354055,27354163,-,MLT1B,LTR,ERVL-MaLR,-372,95,1,27353683,27354163 -6 - chr22 27354377 27354532 chr22,27354377,27354532,+,L2,LINE,L2,2668,2827,-592,27351710,27355124 +6 + chr22 27354685 27355050 chr22,27354685,27355050,-,THE1B,LTR,ERVL-MaLR,0,364,30,27354685,27355079 -6 - chr22 27355050 27355350 chr22,27355050,27355350,+,AluSx,SINE,Alu,5,302,-10,27355046,27355360 +6 + chr22 27355350 27355382 chr22,27355350,27355382,-,THE1B,LTR,ERVL-MaLR,-335,29,1,27355015,27355382 -6 - chr22 27355594 27355745 chr22,27355594,27355745,+,MamGypLTR3a,LTR,Gypsy,36,208,-773,27355559,27356518 +6 + chr22 27355790 27355912 chr22,27355790,27355912,+,MamGypLTR3a,LTR,Gypsy,277,394,-587,27355514,27356499 +6 + chr22 27356129 27356485 chr22,27356129,27356485,+,MamGypLTR3a,LTR,Gypsy,558,934,-47,27355572,27356532 +6 + chr22 27356489 27357213 chr22,27356489,27357213,+,L1ME3,LINE,L1,5347,6079,-83,27351143,27357296 +6 + chr22 27357213 27357670 chr22,27357213,27357670,+,MLT1A,LTR,ERVL-MaLR,1,374,0,27357213,27357670 +6 + chr22 27357670 27357748 chr22,27357670,27357748,+,L1ME3,LINE,L1,6080,6162,0,27351591,27357748 +6 + chr22 27358198 27358324 chr22,27358198,27358324,+,MER5A1,DNA,hAT-Charlie,2,131,-35,27358197,27358359 +6 + chr22 27359154 27359650 chr22,27359154,27359650,-,L2b,LINE,L2,-72,3303,2843,27359082,27362492 -6 - chr22 27359787 27361441 chr22,27359787,27361441,-,L1MC1,LINE,L1,0,6508,4817,27359787,27366257 -6 - chr22 27361450 27361571 chr22,27361450,27361571,-,AluJr,SINE,Alu,-188,124,5,27361262,27361575 -6 - chr22 27361571 27366225 chr22,27361571,27366225,-,L1MC1,LINE,L1,-1505,4816,1,27360066,27366225 -6 - chr22 27366243 27366906 chr22,27366243,27366906,-,L1MEd,LINE,L1,-3195,2951,2220,27363048,27369125 -6 - chr22 27366909 27367193 chr22,27366909,27367193,+,AluJb,SINE,Alu,1,286,-26,27366909,27367219 +6 + chr22 27367350 27368463 chr22,27367350,27368463,-,L1MEd,LINE,L1,-5085,2018,921,27362265,27369383 -6 - chr22 27368463 27368778 chr22,27368463,27368778,-,AluSx,SINE,Alu,0,312,1,27368463,27368778 -6 - chr22 27368778 27369239 chr22,27368778,27369239,-,L1MEd,LINE,L1,-6183,920,463,27362595,27369701 -6 - chr22 27369259 27369553 chr22,27369259,27369553,-,AluSx4,SINE,Alu,-15,295,2,27369244,27369554 -6 - chr22 27370121 27370362 chr22,27370121,27370362,-,L1ME3A,LINE,L1,-62,6111,5867,27370059,27376228 -6 - chr22 27370362 27370746 chr22,27370362,27370746,+,MSTA,LTR,ERVL-MaLR,1,428,0,27370362,27370746 +6 + chr22 27370746 27370985 chr22,27370746,27370985,-,L1ME3A,LINE,L1,-307,5866,5599,27370439,27376583 -6 - chr22 27371017 27371142 chr22,27371017,27371142,+,L2c,LINE,L2,3262,3386,-1,27367756,27371143 +6 + chr22 27371713 27371754 chr22,27371713,27371754,+,(T)n,Simple_repeat,Simple_repeat,1,41,0,27371713,27371754 +6 + chr22 27371845 27371868 chr22,27371845,27371868,+,(GT)n,Simple_repeat,Simple_repeat,1,23,0,27371845,27371868 +6 + chr22 27371867 27372158 chr22,27371867,27372158,+,GA-rich,Low_complexity,Low_complexity,1,312,0,27371867,27372158 +6 + chr22 27372469 27372510 chr22,27372469,27372510,+,(CAG)n,Simple_repeat,Simple_repeat,1,44,0,27372469,27372510 +6 + chr22 27373052 27375745 chr22,27373052,27375745,+,L1P2,LINE,L1,1,2710,-3436,27373052,27379181 +6 + chr22 27375745 27376592 chr22,27375745,27376592,+,L1PA6,LINE,L1,5303,6153,-1,27370443,27376593 +6 + chr22 27377126 27377390 chr22,27377126,27377390,+,AluJo,SINE,Alu,3,301,-11,27377124,27377401 +6 + chr22 27377731 27377815 chr22,27377731,27377815,-,X7B_LINE,LINE,CR1,-33,217,132,27377698,27377946 -6 - chr22 27377868 27377887 chr22,27377868,27377887,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,27377868,27377887 +6 + chr22 27377940 27378175 chr22,27377940,27378175,-,MIRb,SINE,MIR,-19,249,5,27377921,27378179 -6 - chr22 27379186 27379242 chr22,27379134,27379242,+,MIRb,SINE,MIR,87,202,-66,27379048,27379308 +2 + chr22 27379249 27379265 chr22,27379249,27379388,+,AluJr,SINE,Alu,137,275,-37,27379113,27379425 +5 + chr22 27414944 27415050 chr22,27414944,27415050,+,MIRb,SINE,MIR,23,130,-138,27414922,27415188 -6 + chr22 27419428 27419652 chr22,27419428,27419652,+,MIRb,SINE,MIR,41,268,0,27419388,27419652 -6 + chr22 27457441 27457730 chr22,27457441,27457920,+,MLT1G1,LTR,ERVL-MaLR,73,568,-11,27457369,27457931 -2 + chr22 27459775 27460060 chr22,27459741,27460296,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,27459741,27460296 +1 - chr22 27514217 27514252 chr22,27514217,27514252,+,(TTTG)n,Simple_repeat,Simple_repeat,1,36,0,27514217,27514252 +6 + chr22 27514282 27514325 chr22,27514282,27514325,-,MIRc,SINE,MIR,-201,67,23,27514081,27514347 -6 - chr22 27514364 27514476 chr22,27514364,27514476,-,MIR3,SINE,MIR,-30,178,65,27514334,27514540 -6 - chr22 27514611 27514824 chr22,27514611,27514824,+,Chap1_Mam,DNA,hAT-Charlie,28,254,-88,27514584,27514912 +6 + chr22 27514826 27514964 chr22,27514826,27514964,+,MIRb,SINE,MIR,105,239,-29,27514722,27514993 +6 + chr22 27515010 27515124 chr22,27515010,27515124,+,MIR3,SINE,MIR,61,189,-19,27514950,27515143 +6 + chr22 27515161 27515307 chr22,27515161,27515307,-,MIRb,SINE,MIR,-9,259,102,27515152,27515408 -6 - chr22 27515422 27515561 chr22,27515422,27515561,-,MIR1_Amn,SINE,MIR,-79,151,12,27515343,27515572 -6 - chr22 27515775 27515932 chr22,27515775,27515932,+,MIRb,SINE,MIR,2,162,-106,27515774,27516038 +6 + chr22 27516107 27516544 chr22,27516107,27516544,+,MLT1H,LTR,ERVL-MaLR,16,526,-23,27516092,27516567 +6 + chr22 27516578 27516737 chr22,27516578,27516737,+,L2,LINE,L2,2603,2742,-677,27513976,27517414 +6 + chr22 27517025 27517127 chr22,27517025,27517127,-,MIR3,SINE,MIR,-25,183,79,27517000,27517205 -6 - chr22 27517524 27517608 chr22,27517524,27517608,+,MIR1_Amn,SINE,MIR,84,170,-92,27517441,27517700 +6 + chr22 27518070 27518233 chr22,27518070,27518233,+,MIR,SINE,MIR,23,202,-66,27518048,27518299 +6 + chr22 27519437 27519748 chr22,27519437,27519748,-,AluSz6,SINE,Alu,0,312,1,27519437,27519748 -6 - chr22 27519763 27519903 chr22,27519763,27519903,-,MIRb,SINE,MIR,0,262,118,27519763,27520020 -6 - chr22 27520149 27520281 chr22,27520149,27520281,+,AluJr4,SINE,Alu,2,133,-179,27520148,27520460 +6 + chr22 27520296 27520506 chr22,27520296,27520506,-,MIR3,SINE,MIR,-53,215,3,27520243,27520508 -6 - chr22 27520561 27520862 chr22,27520561,27520862,-,AluJb,SINE,Alu,-8,304,1,27520553,27520862 -6 - chr22 27520862 27521021 chr22,27520862,27521021,-,MER5A,DNA,hAT-Charlie,-31,158,1,27520831,27521021 -6 - chr22 27521131 27521172 chr22,27521131,27521172,-,MIR3,SINE,MIR,-57,151,111,27521074,27521282 -6 - chr22 27521222 27521303 chr22,27521222,27521303,-,MER45A,DNA,hAT-Tip100,0,178,103,27521222,27521405 -6 - chr22 27521303 27521599 chr22,27521303,27521599,+,AluSg,SINE,Alu,1,296,-14,27521303,27521613 +6 + chr22 27521599 27521700 chr22,27521599,27521700,-,MER45A,DNA,hAT-Tip100,-76,102,1,27521523,27521700 -6 - chr22 27522024 27522317 chr22,27522024,27522317,-,AluSx,SINE,Alu,-17,295,4,27522007,27522320 -6 - chr22 27522850 27522903 chr22,27522850,27522903,+,(TG)n,Simple_repeat,Simple_repeat,1,54,0,27522850,27522903 +6 + chr22 27522903 27522937 chr22,27522903,27522937,+,(GA)n,Simple_repeat,Simple_repeat,1,34,0,27522903,27522937 +6 + chr22 27522996 27523265 chr22,27522996,27523291,-,AluJr,SINE,Alu,-16,296,3,27522980,27523293 -5 - chr22 27563839 27563922 chr22,27563819,27563936,+,MIRb,SINE,MIR,36,153,-115,27563784,27564051 -5 + chr22 27564292 27564433 chr22,27564292,27564512,+,MLT1D,LTR,ERVL-MaLR,261,503,-2,27564032,27564514 -2 + chr22 27676559 27676601 chr22,27676241,27676601,-,L1ME3,LINE,L1,0,6162,5750,27676241,27682350 +5 - chr22 27676604 27676887 chr22,27676604,27677073,-,MLT1H,LTR,ERVL-MaLR,-2,547,3,27676602,27677075 +2 - chr22 27689720 27689885 chr22,27689643,27689943,+,L1ME4b,LINE,L1,364,678,-214,27689280,27690157 -3 + chr22 27697608 27697692 chr22,27697608,27697692,+,L2c,LINE,L2,3267,3348,-39,27694342,27697731 -6 + chr22 27706694 27706745 chr22,27706287,27706745,+,L2b,LINE,L2,2655,3156,-219,27703633,27706964 -4 + chr22 27709891 27709931 chr22,27709819,27710122,+,MLT1I,LTR,ERVL-MaLR,84,411,0,27709736,27710122 +5 + chr22 27714902 27714970 chr22,27714902,27715058,-,MER117,DNA,hAT-Charlie,-17,180,18,27714885,27715075 +1 - chr22 27716480 27716543 chr22,27715992,27716543,-,MLT1G1,LTR,ERVL-MaLR,0,579,1,27715992,27716543 -1 - chr22 27716543 27716563 chr22,27716543,27716715,-,MIRb,SINE,MIR,-84,184,24,27716459,27716738 -4 - chr22 27721311 27721406 chr22,27721253,27721406,-,MIR,SINE,MIR,-70,192,23,27721183,27721428 -2 - chr22 27924347 27924558 chr22,27924165,27924558,+,HSMAR1,DNA,TcMar-Mariner,1,387,-900,27924165,27925458 +2 + chr22 27924563 27924817 chr22,27924563,27924817,+,HSMAR1,DNA,TcMar-Mariner,1028,1281,-6,27923536,27924823 +6 + chr22 27924935 27924963 chr22,27924935,27925147,-,MER20,DNA,hAT-Charlie,-2,217,1,27924933,27925147 -5 - chr22 27935151 27935230 chr22,27934686,27935294,-,L1MC5,LINE,L1,-708,8596,7943,27933978,27943236 -1 - chr22 27940020 27940071 chr22,27939676,27940071,-,L1MEd,LINE,L1,-3427,2719,2285,27936249,27942355 -2 - chr22 27940077 27940171 chr22,27940077,27940274,-,L1MC5a,LINE,L1,-3,2774,2570,27940074,27942843 -4 - chr22 27986097 27986392 chr22,27986097,27986441,+,THE1D,LTR,ERVL-MaLR,1,381,0,27986097,27986441 +5 + chr22 27998111 27998214 chr22,27998111,27998214,-,MIRc,SINE,MIR,-114,154,44,27997997,27998257 -6 - chr22 27999709 27999945 chr22,27999709,27999945,-,MamTip1,DNA,hAT-Tip100,0,267,37,27999709,27999981 -6 - chr22 28220486 28220829 chr22,28220261,28220829,-,MLT1E1A,LTR,ERVL-MaLR,0,680,1,28220261,28220829 -1 - chr22 28221570 28221978 chr22,28221570,28221978,+,L2b,LINE,L2,2922,3378,-9,28218649,28221987 +6 + chr22 28223916 28223977 chr22,28223916,28223977,-,MIRc,SINE,MIR,-14,254,189,28223902,28224165 -6 - chr22 28223982 28224201 chr22,28223982,28224201,+,MER20,DNA,hAT-Charlie,1,218,-1,28223982,28224202 +6 + chr22 28224210 28224335 chr22,28224210,28224335,-,MER5A1,DNA,hAT-Charlie,0,166,17,28224210,28224351 -6 - chr22 28224749 28224880 chr22,28224749,28224880,+,MLT1O,LTR,ERVL-MaLR,405,537,-5,28224345,28224885 +6 + chr22 28224926 28225027 chr22,28224926,28225027,-,MIRc,SINE,MIR,-145,117,11,28224781,28225037 -6 - chr22 28225092 28225385 chr22,28225092,28225385,+,AluSx4,SINE,Alu,1,310,0,28225092,28225385 +6 + chr22 28225385 28225424 chr22,28225385,28225424,+,(GAA)n,Simple_repeat,Simple_repeat,1,40,0,28225385,28225424 +6 + chr22 28225616 28226416 chr22,28225616,28226416,-,L1ME1,LINE,L1,-15,6164,5404,28225601,28231819 -6 - chr22 28226416 28226725 chr22,28226416,28226725,-,AluSz,SINE,Alu,-3,309,2,28226413,28226726 -6 - chr22 28226725 28226837 chr22,28226725,28226837,-,L1ME1,LINE,L1,-776,5403,5290,28225949,28232126 -6 - chr22 28226813 28226900 chr22,28226813,28226900,-,L1MC,LINE,L1,-934,5212,5128,28225879,28232027 -6 - chr22 28226922 28227196 chr22,28226922,28227196,-,AluJr,SINE,Alu,-10,302,37,28226912,28227232 -6 - chr22 28227196 28228395 chr22,28227196,28228395,+,L1MB3,LINE,L1,4947,6180,-3,28222250,28228398 +6 + chr22 28228417 28228721 chr22,28228417,28228721,+,AluSx,SINE,Alu,1,306,-6,28228417,28228727 +6 + chr22 28228874 28229177 chr22,28228874,28229177,+,AluSc8,SINE,Alu,1,303,-8,28228874,28229185 +6 + chr22 28231093 28231279 chr22,28231093,28231279,-,L2c,LINE,L2,0,3426,3221,28231093,28234499 -6 - chr22 28231355 28231395 chr22,28231355,28231395,+,(TTTGT)n,Simple_repeat,Simple_repeat,1,40,0,28231355,28231395 +6 + chr22 28232072 28232382 chr22,28232072,28232382,+,MLT1M,LTR,ERVL-MaLR,28,350,-322,28232045,28232704 +6 + chr22 28232485 28232600 chr22,28232485,28232600,+,MLT1M,LTR,ERVL-MaLR,538,667,-5,28231948,28232605 +5 + chr22 28398572 28398796 chr22,28398451,28398796,+,MamRep137,DNA,TcMar-Tigger,153,507,-3,28398299,28398799 +1 + chr22 28399214 28399317 chr22,28399214,28399317,+,Tigger19a,DNA,TcMar-Tigger,45,154,-169,28399170,28399486 +6 + chr22 28399317 28399604 chr22,28399317,28399604,-,AluJb,SINE,Alu,-11,301,1,28399306,28399604 -6 - chr22 28399604 28399665 chr22,28399604,28399665,+,Tigger19a,DNA,TcMar-Tigger,155,220,-103,28399450,28399768 +6 + chr22 28399902 28400108 chr22,28399902,28400108,-,L1ME4a,LINE,L1,-10,6114,5885,28399892,28405992 -6 - chr22 28400404 28400460 chr22,28400404,28400460,+,(TATTT)n,Simple_repeat,Simple_repeat,1,58,0,28400404,28400460 +6 + chr22 28400522 28400562 chr22,28400522,28400562,+,(TAG)n,Simple_repeat,Simple_repeat,1,40,0,28400522,28400562 +6 + chr22 28401135 28401207 chr22,28401135,28401207,+,GA-rich,Low_complexity,Low_complexity,1,73,0,28401135,28401207 +6 + chr22 28401208 28401250 chr22,28401208,28401250,+,(GAC)n,Simple_repeat,Simple_repeat,1,42,0,28401208,28401250 +6 + chr22 28401333 28401635 chr22,28401333,28401635,+,AluSx,SINE,Alu,1,305,-7,28401333,28401642 +6 + chr22 28401643 28401778 chr22,28401643,28401778,+,AluJr,SINE,Alu,1,125,-187,28401643,28401965 +6 + chr22 28402098 28402161 chr22,28402098,28402161,-,LFSINE_Vert,SINE,tRNA,-44,415,351,28402054,28402511 -6 - chr22 28402587 28402822 chr22,28402587,28402822,+,MIRb,SINE,MIR,3,268,0,28402585,28402822 +6 + chr22 28404110 28404416 chr22,28404110,28404416,-,AluY,SINE,Alu,-3,308,1,28404107,28404416 -6 - chr22 28784765 28785069 chr22,28784765,28785069,-,AluYf1,SINE,Alu,-7,304,1,28784758,28785069 -6 - chr22 28785177 28785487 chr22,28785177,28785487,-,AluJb,SINE,Alu,-1,311,1,28785176,28785487 -6 - chr22 28785776 28785944 chr22,28785776,28785944,+,FRAM,SINE,Alu,1,166,-10,28785776,28785954 +6 + chr22 28787212 28787438 chr22,28787212,28787438,-,AluSx1,SINE,Alu,-85,227,1,28787127,28787438 -6 - chr22 28788020 28788163 chr22,28788020,28788163,+,UCON2,DNA?,DNA?,232,378,-207,28787789,28788370 +6 + chr22 28788959 28788989 chr22,28788959,28788989,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,28788959,28788989 +6 + chr22 28789584 28789711 chr22,28789584,28789711,+,FLAM_C,SINE,Alu,1,133,-10,28789584,28789721 +6 + chr22 28789829 28790002 chr22,28789829,28790002,-,AluSp,SINE,Alu,-12,301,127,28789817,28790128 -6 - chr22 28790005 28790316 chr22,28790005,28790316,-,AluSx,SINE,Alu,-3,309,1,28790002,28790316 -6 - chr22 28790453 28790740 chr22,28790453,28790740,-,AluSx4,SINE,Alu,-21,289,2,28790432,28790741 -6 - chr22 28791118 28791391 chr22,28791118,28791391,+,AluJr,SINE,Alu,1,288,-24,28791118,28791415 +6 + chr22 28791452 28791591 chr22,28791452,28791591,-,FLAM_C,SINE,Alu,-2,141,1,28791450,28791591 -6 - chr22 28791768 28792072 chr22,28791768,28792072,+,AluSz,SINE,Alu,1,303,-9,28791768,28792081 +6 + chr22 28792574 28792856 chr22,28792574,28792856,-,AluSx3,SINE,Alu,-20,291,1,28792554,28792856 -6 - chr22 28792988 28793289 chr22,28792988,28793289,-,AluSq2,SINE,Alu,-13,300,1,28792975,28793289 -6 - chr22 28793591 28793910 chr22,28793591,28793910,-,AluY,SINE,Alu,0,311,1,28793591,28793910 -6 - chr22 28793992 28794215 chr22,28793992,28794215,-,MIR,SINE,MIR,-1,261,7,28793991,28794221 -6 - chr22 28794285 28794330 chr22,28794285,28794330,+,MIRc,SINE,MIR,55,101,-167,28794231,28794497 +6 + chr22 28797498 28797786 chr22,28797498,28797786,+,AluSx1,SINE,Alu,1,286,-26,28797498,28797812 +6 + chr22 28797786 28797836 chr22,28797786,28797836,+,(TAA)n,Simple_repeat,Simple_repeat,1,52,0,28797786,28797836 +6 + chr22 28798302 28798607 chr22,28798302,28798607,-,AluSx1,SINE,Alu,-15,297,2,28798287,28798608 -6 - chr22 28798611 28798920 chr22,28798611,28798920,-,AluSz6,SINE,Alu,-14,298,1,28798597,28798920 -6 - chr22 28799752 28799855 chr22,28799752,28799855,-,MIRb,SINE,MIR,-21,247,126,28799731,28799980 -6 - chr22 28800217 28800309 chr22,28800217,28800309,+,(CCCAGC)n,Simple_repeat,Simple_repeat,1,92,0,28800217,28800309 +6 + chr22 28800536 28800587 chr22,28800536,28800587,+,(CGCGC)n,Simple_repeat,Simple_repeat,1,52,0,28800536,28800587 +6 + chr22 28801002 28801093 chr22,28801002,28801093,+,AluSx3,SINE,Alu,211,301,-10,28800792,28801103 +6 + chr22 28801285 28801380 chr22,28801285,28801380,-,FLAM_C,SINE,Alu,-9,134,43,28801276,28801422 -6 - chr22 28801385 28801692 chr22,28801385,28801692,-,AluSc8,SINE,Alu,0,311,1,28801385,28801692 -6 - chr22 28801986 28802062 chr22,28801986,28802062,-,L2a,LINE,L2,-9,3417,3341,28801977,28805402 -6 - chr22 28802669 28802794 chr22,28802669,28802794,-,FLAM_C,SINE,Alu,-13,130,1,28802656,28802794 -6 - chr22 28803249 28803554 chr22,28803249,28803554,+,AluSx1,SINE,Alu,1,307,-5,28803249,28803559 +6 + chr22 28803556 28803609 chr22,28803556,28803609,-,LTR27B,LTR,ERV1,-401,193,142,28803155,28803750 -6 - chr22 28803621 28803747 chr22,28803621,28803747,+,L1MEi,LINE,L1,1998,2122,-90,28801624,28803837 +6 + chr22 28803750 28803923 chr22,28803750,28803923,-,L1MEi,LINE,L1,-7,2205,2023,28803743,28805945 -6 - chr22 28803923 28804201 chr22,28803923,28804201,+,AluJr,SINE,Alu,48,309,-3,28803876,28804204 +6 + chr22 28804226 28804390 chr22,28804226,28804390,+,L1M4,LINE,L1,2368,2551,-3663,28801859,28808053 +6 + chr22 28804391 28804683 chr22,28804391,28804683,+,AluSz6,SINE,Alu,1,306,-6,28804391,28804689 +6 + chr22 28804683 28804853 chr22,28804683,28804853,+,AluJb,SINE,Alu,134,303,-9,28804550,28804862 +6 + chr22 28804855 28804967 chr22,28804855,28804967,+,AluSq2,SINE,Alu,1,109,-204,28804855,28805171 +6 + chr22 28804967 28805052 chr22,28804967,28805052,-,MER9a1,LTR,ERVK,0,513,442,28804967,28805493 -6 - chr22 28805052 28805357 chr22,28805052,28805357,+,AluY,SINE,Alu,1,307,-4,28805052,28805361 +6 + chr22 28805357 28805798 chr22,28805357,28805798,-,MER9a1,LTR,ERVK,-72,441,1,28805285,28805798 -6 - chr22 28805798 28805995 chr22,28805798,28805995,+,AluSq2,SINE,Alu,110,304,-9,28805689,28806004 +6 + chr22 28806132 28806423 chr22,28806132,28806423,-,AluSg,SINE,Alu,-15,295,3,28806117,28806425 -6 - chr22 28806460 28806755 chr22,28806460,28806755,-,AluSx,SINE,Alu,-14,298,2,28806446,28806756 -6 - chr22 28806763 28806953 chr22,28806763,28806953,-,L1M5,LINE,L1,-510,5669,5473,28806253,28812425 -6 - chr22 28806962 28807119 chr22,28806962,28807119,+,L2a,LINE,L2,3269,3420,-6,28803694,28807125 +6 + chr22 28807150 28807465 chr22,28807150,28807465,-,AluSx,SINE,Alu,-7,305,2,28807143,28807466 -6 - chr22 28807477 28807777 chr22,28807477,28807777,-,AluSp,SINE,Alu,-12,301,1,28807465,28807777 -6 - chr22 28807798 28807853 chr22,28807798,28807853,+,L3,LINE,CR1,110,163,-3936,28807689,28811789 +6 + chr22 28808051 28808263 chr22,28808051,28808263,+,MLT1J,LTR,ERVL-MaLR,230,428,-84,28807822,28808347 +6 + chr22 28808332 28808628 chr22,28808332,28808628,-,AluSx,SINE,Alu,-14,298,2,28808318,28808629 -6 - chr22 28808826 28808899 chr22,28808826,28808899,-,MIRb,SINE,MIR,-108,160,88,28808718,28808986 -6 - chr22 28809015 28809234 chr22,28809015,28809234,-,MER20,DNA,hAT-Charlie,-4,215,2,28809011,28809235 -6 - chr22 28815074 28815232 chr22,28815074,28815232,+,MIRb,SINE,MIR,87,261,-7,28814988,28815239 +6 + chr22 28822026 28822105 chr22,28822026,28822105,+,MIR3,SINE,MIR,78,156,-52,28821949,28822157 +6 + chr22 28822121 28822215 chr22,28822121,28822233,+,MIRb,SINE,MIR,113,228,-40,28822009,28822273 +5 + chr22 28839020 28839033 chr22,28839020,28839118,+,MIR,SINE,MIR,152,253,-9,28838869,28839127 +5 + chr22 28844127 28844150 chr22,28843981,28844150,-,L1ME4a,LINE,L1,-2,6122,5952,28843979,28850101 -2 - chr22 28848391 28848502 chr22,28848241,28848502,-,AluJr,SINE,Alu,-30,282,5,28848211,28848506 -2 - chr22 28930201 28930386 chr22,28929731,28930386,-,Tigger13a,DNA,TcMar-Tigger,-1,770,101,28929730,28930486 -1 - chr22 28930467 28930606 chr22,28930467,28930606,+,MIRc,SINE,MIR,33,172,-96,28930435,28930702 +6 + chr22 28930737 28930887 chr22,28930737,28930887,+,MamSINE1,SINE,tRNA-RTE,81,253,-37,28930657,28930924 +6 + chr22 28931456 28931505 chr22,28931456,28931505,+,MamRTE1,LINE,RTE-BovB,2901,2949,-863,28928556,28932368 +6 + chr22 28931699 28931814 chr22,28931699,28931814,-,L2a,LINE,L2,-56,3370,3197,28931643,28935010 -6 - chr22 28931772 28932025 chr22,28931772,28932025,+,MamRTE1,LINE,RTE-BovB,3297,3554,-258,28928476,28932283 +6 + chr22 28932233 28932285 chr22,28932233,28932285,+,MIR3,SINE,MIR,92,146,-62,28932142,28932347 +6 + chr22 28932798 28932834 chr22,28932798,28932834,-,U2,snRNA,snRNA,-152,36,1,28932646,28932834 -6 - chr22 28933704 28933752 chr22,28933704,28933752,+,(CACCCC)n,Simple_repeat,Simple_repeat,1,50,0,28933704,28933752 +6 + chr22 28933752 28933779 chr22,28933752,28933779,+,(CT)n,Simple_repeat,Simple_repeat,1,27,0,28933752,28933779 +6 + chr22 28933779 28933813 chr22,28933779,28933813,+,(CACCCC)n,Simple_repeat,Simple_repeat,1,34,0,28933779,28933813 +6 + chr22 28934535 28934838 chr22,28934535,28934838,+,AluSx1,SINE,Alu,1,303,-9,28934535,28934847 +6 + chr22 28937170 28937216 chr22,28937170,28937216,+,(TA)n,Simple_repeat,Simple_repeat,1,47,0,28937170,28937216 +6 + chr22 28937216 28937238 chr22,28937216,28937238,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,28937216,28937238 +6 + chr22 28937550 28937705 chr22,28937550,28937705,-,MER5A,DNA,hAT-Charlie,-5,184,1,28937545,28937705 -6 - chr22 28937718 28937784 chr22,28937718,28937784,-,L1ME4a,LINE,L1,-74,6050,5986,28937644,28943769 -6 - chr22 28937856 28938035 chr22,28937856,28938035,-,L1MC3,LINE,L1,0,7785,7610,28937856,28945644 -6 - chr22 28938221 28938297 chr22,28938221,28938297,-,L1ME3G,LINE,L1,-291,633,556,28937930,28938852 -6 - chr22 28938422 28938564 chr22,28938422,28938564,-,MIRb,SINE,MIR,-16,252,107,28938406,28938670 -6 - chr22 28938877 28939002 chr22,28938877,28939002,+,MIRb,SINE,MIR,22,153,-115,28938856,28939117 +6 + chr22 28939002 28939304 chr22,28939002,28939304,+,AluSz6,SINE,Alu,1,303,-9,28939002,28939313 +6 + chr22 28939304 28939411 chr22,28939304,28939411,+,MIRb,SINE,MIR,151,267,-1,28939154,28939412 +6 + chr22 28939546 28939743 chr22,28939546,28939743,+,L2c,LINE,L2,3146,3376,-11,28936401,28939754 +6 + chr22 28940496 28940516 chr22,28940496,28940516,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,28940496,28940516 +6 + chr22 28941448 28941489 chr22,28941448,28941489,+,(CTTTTCT)n,Simple_repeat,Simple_repeat,1,42,0,28941448,28941489 +6 + chr22 28941635 28941985 chr22,28941635,28941985,+,AluSp,SINE,Alu,3,313,0,28941633,28941985 +6 + chr22 28942477 28942640 chr22,28942477,28942640,+,MIR3,SINE,MIR,16,201,-7,28942462,28942647 +6 + chr22 28944139 28944194 chr22,28944139,28944194,+,L1ME4a,LINE,L1,5570,5619,-505,28938570,28944699 +6 + chr22 28944195 28944236 chr22,28944195,28944236,+,AluYk11,SINE,Alu,1,41,-270,28944195,28944506 +6 + chr22 28944340 28944473 chr22,28944340,28944473,+,AluSc8,SINE,Alu,1,133,-178,28944340,28944651 +6 + chr22 28944473 28944773 chr22,28944473,28944773,+,AluSz,SINE,Alu,2,301,-11,28944472,28944784 +6 + chr22 28944773 28944925 chr22,28944773,28944925,+,AluSc8,SINE,Alu,134,281,-30,28944640,28944955 +6 + chr22 28944926 28944964 chr22,28944926,28944964,+,(AAAT)n,Simple_repeat,Simple_repeat,1,38,0,28944926,28944964 +6 + chr22 28944964 28945035 chr22,28944964,28945035,+,L1ME4a,LINE,L1,5603,5665,-459,28939362,28945494 +6 + chr22 28945035 28945164 chr22,28945035,28945164,+,FLAM_C,SINE,Alu,1,131,-12,28945035,28945176 +6 + chr22 28945164 28945400 chr22,28945164,28945400,+,L1ME4a,LINE,L1,5666,5926,-198,28939499,28945598 +6 + chr22 28945409 28945526 chr22,28945409,28945526,+,FLAM_C,SINE,Alu,1,110,-23,28945409,28945549 +6 + chr22 28945526 28945827 chr22,28945526,28945827,-,AluSc,SINE,Alu,-8,301,1,28945518,28945827 -6 - chr22 28945827 28945851 chr22,28945827,28945851,+,FLAM_C,SINE,Alu,111,130,-3,28945717,28945854 +6 + chr22 28945968 28946167 chr22,28945968,28946167,+,Tigger4a,DNA,TcMar-Tigger,1,236,0,28945968,28946167 +6 + chr22 28947205 28947736 chr22,28947205,28947736,-,L1M4,LINE,L1,-364,5814,5277,28946841,28953012 -6 - chr22 28947766 28947853 chr22,28947766,28947853,-,Charlie1a,DNA,hAT-Charlie,-97,1358,1259,28947669,28949111 -6 - chr22 28947853 28948141 chr22,28947853,28948141,-,AluSc,SINE,Alu,-20,289,2,28947833,28948142 -6 - chr22 28948141 28948171 chr22,28948141,28948171,-,Charlie1a,DNA,hAT-Charlie,-197,1258,1240,28947944,28949410 -6 - chr22 28948171 28948466 chr22,28948171,28948466,-,AluJr,SINE,Alu,-23,289,1,28948148,28948466 -6 - chr22 28948466 28948991 chr22,28948466,28948991,-,Charlie1a,DNA,hAT-Charlie,-216,1239,727,28948250,28949717 -6 - chr22 28948991 28949277 chr22,28948991,28949277,-,AluSq2,SINE,Alu,-25,288,1,28948966,28949277 -6 - chr22 28949279 28949577 chr22,28949279,28949577,-,AluJb,SINE,Alu,-17,295,1,28949262,28949577 -6 - chr22 28949577 28950246 chr22,28949577,28950246,-,Charlie1a,DNA,hAT-Charlie,-729,726,48,28948848,28950293 -6 - chr22 28951212 28951656 chr22,28951212,28951656,+,MLT1C,LTR,ERVL-MaLR,3,466,-1,28951210,28951657 +6 + chr22 28953733 28953811 chr22,28953733,28953811,-,MADE2,DNA,TcMar-Mariner,0,80,3,28953733,28953813 -6 - chr22 28953831 28954057 chr22,28953831,28954057,+,MIR,SINE,MIR,5,230,-32,28953827,28954089 +6 + chr22 28954104 28954149 chr22,28954104,28954149,-,MER113A,DNA,hAT-Charlie,-33,281,241,28954071,28954389 -6 - chr22 28954149 28954527 chr22,28954149,28954527,-,MLT1A,LTR,ERVL-MaLR,0,374,1,28954149,28954527 -6 - chr22 28954527 28954572 chr22,28954527,28954572,-,MER113A,DNA,hAT-Charlie,-74,240,196,28954453,28954767 -6 - chr22 28954644 28954904 chr22,28954644,28954904,-,AluJb,SINE,Alu,-20,292,11,28954624,28954914 -6 - chr22 28955032 28955346 chr22,28955032,28955346,-,AluJo,SINE,Alu,-4,308,1,28955028,28955346 -6 - chr22 28955379 28955519 chr22,28955379,28955519,-,MER113A,DNA,hAT-Charlie,-164,150,4,28955215,28955522 -6 - chr22 28955673 28955927 chr22,28955673,28955927,+,AluJo,SINE,Alu,38,291,-21,28955636,28955948 +6 + chr22 28956353 28956377 chr22,28956353,28956377,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,28956353,28956377 +6 + chr22 28957433 28957738 chr22,28957433,28957738,-,AluSx3,SINE,Alu,-6,305,1,28957427,28957738 -6 - chr22 28957904 28958196 chr22,28957904,28958196,+,AluYm1,SINE,Alu,2,290,-21,28957903,28958217 +6 + chr22 28958508 28958577 chr22,28958508,28958577,+,MIRc,SINE,MIR,109,181,-87,28958400,28958664 +6 + chr22 28959317 28959351 chr22,28959317,28959351,+,(CTCTT)n,Simple_repeat,Simple_repeat,1,37,0,28959317,28959351 +6 + chr22 28959629 28960029 chr22,28959629,28960029,+,MLT1A,LTR,ERVL-MaLR,5,374,0,28959625,28960029 +6 + chr22 28960116 28960199 chr22,28960116,28960199,+,MER5A1,DNA,hAT-Charlie,10,91,-75,28960107,28960274 +6 + chr22 28960142 28960208 chr22,28960142,28960208,-,MER5A,DNA,hAT-Charlie,-24,165,100,28960118,28960307 -6 - chr22 28960240 28960425 chr22,28960240,28960425,-,L1ME2z,LINE,L1,-266,6178,5999,28959974,28966423 -6 - chr22 28960993 28961324 chr22,28960993,28961324,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,28960993,28961324 -6 - chr22 28961645 28961816 chr22,28961645,28961816,-,MIRc,SINE,MIR,-75,193,14,28961570,28961829 -6 - chr22 28962075 28962265 chr22,28962075,28962265,-,MER3,DNA,hAT-Charlie,-11,198,2,28962064,28962266 -6 - chr22 28963523 28963654 chr22,28963523,28963654,+,MIRc,SINE,MIR,67,212,-56,28963457,28963710 +6 + chr22 28964458 28964988 chr22,28964458,28964988,+,LTR75,LTR,ERVL,4,560,-2,28964455,28964990 +6 + chr22 28965099 28965250 chr22,28965099,28965250,+,MIRb,SINE,MIR,29,207,-61,28965071,28965311 +6 + chr22 28965292 28965522 chr22,28965292,28965522,-,MIR,SINE,MIR,0,262,9,28965292,28965530 -6 - chr22 28966264 28966366 chr22,28966264,28966366,+,Tigger3b,DNA,TcMar-Tigger,2,102,-1129,28966263,28967495 +6 + chr22 28966369 28966867 chr22,28966369,28966867,+,Tigger3,DNA,TcMar-Tigger,2148,2698,-331,28964222,28967198 +6 + chr22 28966867 28967181 chr22,28966867,28967181,-,AluSx1,SINE,Alu,-8,304,1,28966859,28967181 -6 - chr22 28967181 28967456 chr22,28967181,28967456,+,Tigger3,DNA,TcMar-Tigger,2699,3028,-1,28964483,28967457 +6 + chr22 28967518 28967644 chr22,28967518,28967644,-,L1MEi,LINE,L1,-842,1370,1242,28966676,28968885 -6 - chr22 28967644 28967951 chr22,28967644,28967951,+,AluJb,SINE,Alu,1,308,-4,28967644,28967955 +6 + chr22 28967951 28968427 chr22,28967951,28968427,-,L1MEi,LINE,L1,-971,1241,758,28966980,28969184 -6 - chr22 28968427 28968721 chr22,28968427,28968721,+,AluSq2,SINE,Alu,1,295,-18,28968427,28968739 +6 + chr22 28968721 28969397 chr22,28968721,28969397,-,L1MEi,LINE,L1,-1455,757,49,28967266,28969445 -6 - chr22 28969447 28970061 chr22,28969447,28970061,-,L2a,LINE,L2,-309,3117,2449,28969138,28972509 -6 - chr22 28970142 28971028 chr22,28970142,28971028,+,L1ME1,LINE,L1,5258,6165,-14,28964885,28971042 +6 + chr22 28971045 28971196 chr22,28971045,28971196,+,AluJr,SINE,Alu,140,290,-22,28970906,28971218 +6 + chr22 28971600 28971682 chr22,28971600,28971682,-,MIRc,SINE,MIR,-98,170,83,28971502,28971764 -6 - chr22 28971716 28972007 chr22,28971716,28972007,-,AluJr,SINE,Alu,-25,287,1,28971691,28972007 -6 - chr22 28972100 28972989 chr22,28972100,28972989,-,L1MB7,LINE,L1,-7,6177,5215,28972093,28978203 -6 - chr22 28972989 28973279 chr22,28972989,28973279,-,AluJo,SINE,Alu,-16,296,1,28972973,28973279 -6 - chr22 28973279 28973390 chr22,28973279,28973390,-,L1MB7,LINE,L1,-932,5214,5094,28972347,28978483 -6 - chr22 28973480 28973585 chr22,28973480,28973585,-,MIRb,SINE,MIR,-145,123,13,28973335,28973597 -6 - chr22 28973953 28974259 chr22,28973953,28974259,-,AluY,SINE,Alu,-8,303,2,28973945,28974260 -6 - chr22 28974642 28974916 chr22,28974642,28974916,-,AluJb,SINE,Alu,-7,305,21,28974635,28974936 -6 - chr22 28975136 28975221 chr22,28975136,28975221,+,AluSx1,SINE,Alu,1,87,-225,28975136,28975446 +6 + chr22 28975221 28975528 chr22,28975221,28975528,+,AluSx4,SINE,Alu,1,301,-9,28975221,28975537 +6 + chr22 28975528 28975749 chr22,28975528,28975749,+,AluSx1,SINE,Alu,88,295,-17,28975441,28975766 +6 + chr22 28976181 28976264 chr22,28976181,28976264,+,AluSz6,SINE,Alu,210,292,-20,28975972,28976284 +6 + chr22 28976273 28976519 chr22,28976273,28976519,+,AluJb,SINE,Alu,40,295,-17,28976234,28976536 +6 + chr22 28978611 28978853 chr22,28978611,28978853,-,HAL1,LINE,L1,-4,2503,2256,28978607,28981108 -6 - chr22 28978918 28979370 chr22,28978918,28979370,-,HAL1,LINE,L1,-410,2097,1619,28978508,28980988 -6 - chr22 28979727 28979810 chr22,28979727,28979810,-,L2b,LINE,L2,0,3375,3290,28979727,28983099 -6 - chr22 28979910 28979953 chr22,28979910,28979953,-,L2b,LINE,L2,-233,3154,3111,28979677,28983063 -6 - chr22 28980019 28980156 chr22,28980019,28980156,-,MIRc,SINE,MIR,-6,262,128,28980013,28980283 -6 - chr22 28980176 28980370 chr22,28980176,28980370,+,L1PB4,LINE,L1,5953,6151,-5,28974224,28980375 +6 + chr22 28980654 28981210 chr22,28980654,28981210,-,Helitron1Nb_Mam,RC,Helitron,-432,684,94,28980222,28981303 -6 - chr22 28981349 28981487 chr22,28981349,28981487,-,FLAM_A,SINE,Alu,-10,132,2,28981339,28981488 -6 - chr22 28981491 28981715 chr22,28981491,28981715,-,Tigger18a,DNA,TcMar-Tigger,-71,781,511,28981420,28982225 -6 - chr22 28981715 28982002 chr22,28981715,28982002,+,AluSx1,SINE,Alu,2,292,-20,28981714,28982022 +6 + chr22 28982002 28982242 chr22,28982002,28982242,-,Tigger18a,DNA,TcMar-Tigger,-342,510,222,28981660,28982463 -6 - chr22 28982315 28982583 chr22,28982315,28982583,+,AluJo,SINE,Alu,1,300,-12,28982315,28982595 +6 + chr22 28982710 28982760 chr22,28982710,28982760,-,Tigger18a,DNA,TcMar-Tigger,-742,110,60,28981968,28982819 -6 - chr22 28984149 28984443 chr22,28984149,28984443,-,L1MB5,LINE,L1,-14,6160,5861,28984135,28990303 -6 - chr22 28985616 28985758 chr22,28985616,28985758,+,MIRc,SINE,MIR,3,154,-114,28985614,28985872 +6 + chr22 28985763 28986212 chr22,28985763,28986212,-,MLT1D,LTR,ERVL-MaLR,0,505,6,28985763,28986217 -6 - chr22 28987371 28987508 chr22,28987371,28987508,+,MIR,SINE,MIR,13,152,-110,28987359,28987618 +6 + chr22 28987508 28987856 chr22,28987508,28987856,-,MER46C,DNA,TcMar-Tigger,-1,337,1,28987507,28987856 -6 - chr22 28987856 28987948 chr22,28987856,28987948,+,MIR,SINE,MIR,153,262,0,28987704,28987948 +6 + chr22 28989343 28989399 chr22,28989343,28989399,+,(TC)n,Simple_repeat,Simple_repeat,1,59,0,28989343,28989399 +6 + chr22 28990109 28990149 chr22,28990109,28990149,+,(CAGGC)n,Simple_repeat,Simple_repeat,1,42,0,28990109,28990149 +6 + chr22 28990402 28990675 chr22,28990402,28990675,+,AluSz6,SINE,Alu,1,282,-30,28990402,28990705 +6 + chr22 28990675 28990707 chr22,28990675,28990707,+,(CAAT)n,Simple_repeat,Simple_repeat,1,32,0,28990675,28990707 +6 + chr22 28990999 28991309 chr22,28990999,28991309,+,AluJb,SINE,Alu,1,312,0,28990999,28991309 +6 + chr22 28991473 28991578 chr22,28991473,28991578,+,MIRb,SINE,MIR,133,245,-23,28991341,28991601 +6 + chr22 28991624 28991772 chr22,28991624,28991772,-,MIRb,SINE,MIR,-47,221,60,28991577,28991831 -6 - chr22 28991862 28992152 chr22,28991862,28992152,+,AluJr4,SINE,Alu,3,282,-30,28991860,28992182 +6 + chr22 28992164 28992207 chr22,28992164,28992207,+,(CCCCCA)n,Simple_repeat,Simple_repeat,1,43,0,28992164,28992207 +6 + chr22 28992265 28992363 chr22,28992265,28992363,-,MLT1O,LTR,ERVL-MaLR,-17,545,451,28992248,28992813 -6 - chr22 28992509 28992607 chr22,28992509,28992607,-,MLT1O,LTR,ERVL-MaLR,-335,207,110,28992174,28992716 -6 - chr22 28993055 28993116 chr22,28993055,28993116,-,L2,LINE,L2,-528,2891,2830,28992527,28995945 -6 - chr22 28993694 28993972 chr22,28993694,28993972,-,AluJr,SINE,Alu,-24,288,1,28993670,28993972 -6 - chr22 28994043 28994118 chr22,28994043,28994118,+,MIRb,SINE,MIR,189,262,-6,28993855,28994124 +6 + chr22 28994176 28994487 chr22,28994176,28994487,-,AluSp,SINE,Alu,0,313,2,28994176,28994488 -6 - chr22 28994519 28994764 chr22,28994519,28994764,+,L1MB3,LINE,L1,5931,6183,0,28988589,28994764 +6 + chr22 28995151 28995444 chr22,28995151,28995444,+,AluY,SINE,Alu,1,298,-13,28995151,28995457 +6 + chr22 28995696 28995777 chr22,28995696,28995777,+,Charlie1,DNA,hAT-Charlie,1,78,-2703,28995696,28998480 +6 + chr22 28995777 28996075 chr22,28995777,28996075,-,AluJb,SINE,Alu,-14,298,1,28995763,28996075 -6 - chr22 28996075 28996109 chr22,28996075,28996109,+,Charlie1,DNA,hAT-Charlie,79,79,-2702,28995997,28998811 +6 + chr22 28996109 28996238 chr22,28996109,28996238,-,FLAM_C,SINE,Alu,-14,129,1,28996095,28996238 -6 - chr22 28996238 28996403 chr22,28996238,28996403,+,Charlie1,DNA,hAT-Charlie,79,244,-2537,28996160,28998940 +6 + chr22 28996382 28996495 chr22,28996382,28996495,+,Charlie1a,DNA,hAT-Charlie,1314,1430,-25,28995069,28996520 +6 + chr22 28997321 28997442 chr22,28997321,28997442,+,MER20,DNA,hAT-Charlie,6,111,-108,28997316,28997550 +6 + chr22 28997573 28997700 chr22,28997573,28997700,+,MIR,SINE,MIR,17,142,-120,28997557,28997820 +6 + chr22 28997729 28998012 chr22,28997729,28998012,+,AluJr,SINE,Alu,1,306,-6,28997729,28998018 +6 + chr22 28998019 28998308 chr22,28998019,28998308,+,AluSx1,SINE,Alu,3,294,-18,28998017,28998326 +6 + chr22 28999036 28999343 chr22,28999036,28999343,+,AluSx1,SINE,Alu,2,292,-20,28999035,28999363 +6 + chr22 28999353 28999485 chr22,28999353,28999485,+,AluJr,SINE,Alu,129,289,-23,28999225,28999508 +6 + chr22 29000608 29000827 chr22,29000608,29000827,-,MSTB,LTR,ERVL-MaLR,0,426,196,29000608,29001022 -6 - chr22 29000829 29001052 chr22,29000829,29001052,-,AluJr,SINE,Alu,-53,259,37,29000776,29001088 -6 - chr22 29001059 29001286 chr22,29001059,29001286,-,AluY,SINE,Alu,0,311,83,29001059,29001368 -6 - chr22 29001288 29001462 chr22,29001288,29001462,-,L1M4,LINE,L1,-815,5331,5168,29000473,29006629 -6 - chr22 29001462 29001769 chr22,29001462,29001769,-,AluSz,SINE,Alu,-7,305,1,29001455,29001769 -6 - chr22 29001769 29001856 chr22,29001769,29001856,-,L1M4,LINE,L1,-979,5167,5082,29000790,29006937 -6 - chr22 29003234 29003531 chr22,29003234,29003531,+,AluY,SINE,Alu,1,299,-12,29003234,29003543 +6 + chr22 29003570 29003842 chr22,29003570,29003842,+,AluJb,SINE,Alu,14,294,-18,29003557,29003860 +6 + chr22 29004718 29004767 chr22,29004718,29004767,+,GA-rich,Low_complexity,Low_complexity,1,53,0,29004718,29004767 +6 + chr22 29005800 29006047 chr22,29005800,29006047,+,AluSp,SINE,Alu,48,296,-17,29005753,29006064 +6 + chr22 29006209 29006511 chr22,29006209,29006511,-,AluSp,SINE,Alu,-7,306,1,29006202,29006511 -6 - chr22 29006983 29007194 chr22,29006983,29007194,-,MIRb,SINE,MIR,-1,267,39,29006982,29007232 -6 - chr22 29007360 29007639 chr22,29007360,29007639,+,AluJr4,SINE,Alu,7,293,-19,29007354,29007658 +6 + chr22 29007744 29008054 chr22,29007744,29008054,-,AluSp,SINE,Alu,0,313,2,29007744,29008055 -6 - chr22 29009780 29009896 chr22,29009780,29009896,-,L1MB3,LINE,L1,-7,6176,6051,29009773,29015946 -6 - chr22 29009896 29010208 chr22,29009896,29010208,-,AluY,SINE,Alu,-2,309,1,29009894,29010208 -6 - chr22 29010208 29010562 chr22,29010208,29010562,-,L1MB3,LINE,L1,-133,6050,5696,29010075,29016257 -6 - chr22 29010562 29010661 chr22,29010562,29010661,-,L1M4,LINE,L1,-881,5265,5168,29009681,29015828 -6 - chr22 29010661 29010968 chr22,29010661,29010968,-,AluSx1,SINE,Alu,-3,309,1,29010658,29010968 -6 - chr22 29010968 29011036 chr22,29010968,29011036,-,L1M4,LINE,L1,-979,5167,5100,29009989,29016135 -6 - chr22 29012804 29012969 chr22,29012804,29012969,-,MIRb,SINE,MIR,-49,219,22,29012755,29012990 -6 - chr22 29013097 29014251 chr22,29013097,29014251,-,MamRTE1,LINE,RTE-BovB,-228,3584,2209,29012869,29016459 -6 - chr22 29014628 29014778 chr22,29014628,29014778,-,L2a,LINE,L2,0,3426,3266,29014628,29018043 -6 - chr22 29015387 29015687 chr22,29015387,29015687,+,AluSx,SINE,Alu,1,300,-12,29015387,29015699 +6 + chr22 29015736 29016037 chr22,29015736,29016037,+,AluSp,SINE,Alu,2,306,-7,29015735,29016044 +6 + chr22 29017147 29017432 chr22,29017147,29017432,+,MER102c,DNA,hAT-Charlie,56,327,-4,29017092,29017436 +6 + chr22 29017621 29017747 chr22,29017621,29017747,-,MER94,DNA,hAT-Blackjack,0,134,1,29017621,29017747 -6 - chr22 29018259 29018627 chr22,29018259,29018627,-,L2a,LINE,L2,-786,2633,2243,29017473,29020869 -5 - chr22 29018815 29019307 chr22,29018815,29019307,-,MLT1H,LTR,ERVL-MaLR,0,549,14,29018815,29019320 -6 - chr22 29019668 29019874 chr22,29019668,29019874,-,MIRb,SINE,MIR,-8,260,47,29019660,29019920 -6 - chr22 29019967 29020249 chr22,29019967,29020249,-,MER2,DNA,TcMar-Tigger,-1,344,90,29019966,29020338 -6 - chr22 29020249 29020560 chr22,29020249,29020560,-,AluSz6,SINE,Alu,-1,311,1,29020248,29020560 -6 - chr22 29020560 29020649 chr22,29020560,29020649,-,MER2,DNA,TcMar-Tigger,-256,89,1,29020304,29020649 -6 - chr22 29020763 29020812 chr22,29020763,29020812,+,(TG)n,Simple_repeat,Simple_repeat,1,49,0,29020763,29020812 +6 + chr22 29020812 29021095 chr22,29020812,29021095,-,AluY,SINE,Alu,-28,283,1,29020784,29021095 -6 - chr22 29021108 29021262 chr22,29021108,29021262,+,AluSq2,SINE,Alu,158,313,0,29020951,29021262 +6 + chr22 29021479 29021787 chr22,29021479,29021787,-,AluSz,SINE,Alu,-4,308,1,29021475,29021787 -6 - chr22 29021797 29021874 chr22,29021797,29021874,-,L1ME1,LINE,L1,-14,6165,6085,29021783,29027958 -6 - chr22 29021874 29021913 chr22,29021874,29021913,+,(CA)n,Simple_repeat,Simple_repeat,1,39,0,29021874,29021913 +6 + chr22 29021913 29022200 chr22,29021913,29022200,-,L1ME1,LINE,L1,-95,6084,5809,29021818,29028008 -6 - chr22 29022878 29023021 chr22,29022878,29023021,-,L1PB4,LINE,L1,-12,6144,6002,29022866,29029022 -6 - chr22 29024676 29024716 chr22,29024676,29024716,+,L2a,LINE,L2,3387,3426,0,29021290,29024716 +6 + chr22 29024999 29025281 chr22,29024976,29025281,-,AluSx1,SINE,Alu,-7,305,1,29024969,29025281 +5 - chr22 29024976 29025281 chr22,29024976,29025281,-,AluSx1,SINE,Alu,-7,305,1,29024969,29025281 -5 - chr22 29025550 29025821 chr22,29025550,29025821,-,AluSx,SINE,Alu,-4,308,1,29025546,29025821 +6 - chr22 29025550 29025821 chr22,29025550,29025821,-,AluSx,SINE,Alu,-4,308,1,29025546,29025821 -6 - chr22 29027105 29027225 chr22,29027105,29027225,+,MER5B,DNA,hAT-Charlie,3,120,-58,29027103,29027283 +6 + chr22 29027225 29027263 chr22,29027225,29027263,+,(TATT)n,Simple_repeat,Simple_repeat,1,39,0,29027225,29027263 +6 + chr22 29027263 29027548 chr22,29027263,29027548,-,AluSq2,SINE,Alu,-28,285,1,29027235,29027548 -6 - chr22 29027548 29027610 chr22,29027548,29027610,+,MER5B,DNA,hAT-Charlie,121,177,-1,29027428,29027611 +6 + chr22 29027694 29027872 chr22,29027694,29027872,-,MIR,SINE,MIR,-71,191,1,29027623,29027872 -6 - chr22 29028598 29028795 chr22,29028598,29028795,+,MIRb,SINE,MIR,30,245,-23,29028569,29028818 +6 + chr22 29029118 29029273 chr22,29029118,29029273,+,MER115,DNA,hAT-Tip100,443,600,-93,29028676,29029366 +6 + chr22 29029569 29029760 chr22,29029569,29029760,+,MER5B,DNA,hAT-Charlie,1,175,-3,29029569,29029763 +6 + chr22 29031029 29031077 chr22,29031029,29031077,+,(CCCTGC)n,Simple_repeat,Simple_repeat,1,48,0,29031029,29031077 +6 + chr22 29032721 29032920 chr22,29032721,29032920,-,L2b,LINE,L2,-6,3369,3158,29032715,29036077 -6 - chr22 29033067 29033372 chr22,29033067,29033372,+,AluSx,SINE,Alu,1,304,-8,29033067,29033380 +6 + chr22 29033465 29033818 chr22,29033465,29033818,-,L2b,LINE,L2,-576,2843,2464,29032889,29036281 -6 - chr22 29034469 29034562 chr22,29034469,29034562,+,MER103C,DNA,hAT-Charlie,8,113,-184,29034462,29034746 +6 + chr22 29034812 29034931 chr22,29034812,29034931,+,L2a,LINE,L2,3305,3426,0,29031508,29034931 +6 + chr22 29035008 29035143 chr22,29035008,29035143,-,AluSz6,SINE,Alu,-179,133,1,29034829,29035143 -6 - chr22 29035267 29035579 chr22,29035267,29035579,+,L1ME3G,LINE,L1,354,674,-250,29034914,29035829 +6 + chr22 29035579 29035879 chr22,29035579,29035879,-,AluSx,SINE,Alu,-16,296,1,29035563,29035879 -6 - chr22 29035887 29035985 chr22,29035887,29035985,-,FLAM_A,SINE,Alu,-20,122,21,29035867,29036005 -6 - chr22 29036285 29036397 chr22,29036285,29036397,-,L2c,LINE,L2,-186,3201,3096,29036099,29039492 -6 - chr22 29038338 29038630 chr22,29038338,29038630,-,AluJr,SINE,Alu,-14,298,1,29038324,29038630 -6 - chr22 29038684 29038855 chr22,29038684,29038855,+,Tigger19a,DNA,TcMar-Tigger,40,206,-117,29038645,29038972 +6 + chr22 29038965 29038982 chr22,29038965,29038982,+,(AG)n,Simple_repeat,Simple_repeat,1,17,0,29038965,29038982 +6 + chr22 29038982 29039069 chr22,29038982,29039069,-,AluJr,SINE,Alu,-90,222,136,29038892,29039204 -6 - chr22 29039674 29039953 chr22,29039674,29039953,+,AluJo,SINE,Alu,11,282,-30,29039664,29039983 +6 + chr22 29039954 29039975 chr22,29039954,29039975,+,(GATA)n,Simple_repeat,Simple_repeat,1,21,0,29039954,29039975 +6 + chr22 29040186 29040480 chr22,29040186,29040480,-,AluSx,SINE,Alu,-19,293,1,29040167,29040480 -6 - chr22 29040502 29040631 chr22,29040502,29040631,-,MIR1_Amn,SINE,MIR,-84,146,27,29040418,29040657 -6 - chr22 29041133 29041158 chr22,29041133,29041158,+,(ATGT)n,Simple_repeat,Simple_repeat,1,25,0,29041133,29041158 +6 + chr22 29041158 29041371 chr22,29041158,29041371,-,AluJo,SINE,Alu,-23,289,74,29041135,29041444 -6 - chr22 29041547 29041717 chr22,29041547,29041717,+,MER5B,DNA,hAT-Charlie,1,175,-3,29041547,29041720 +6 + chr22 29042067 29042125 chr22,29042067,29042125,-,MIRb,SINE,MIR,-73,195,154,29041994,29042278 -6 - chr22 29042125 29042316 chr22,29042125,29042316,-,L1MA5A,LINE,L1,-4,6293,6091,29042121,29048406 -6 - chr22 29042316 29042436 chr22,29042316,29042436,-,MIRb,SINE,MIR,-115,153,35,29042201,29042470 -6 - chr22 29042773 29043070 chr22,29042773,29043070,-,AluSg,SINE,Alu,-11,299,3,29042762,29043072 -6 - chr22 29045078 29045390 chr22,29045078,29045390,+,AluJb,SINE,Alu,1,312,0,29045078,29045390 +6 + chr22 29045482 29045776 chr22,29045482,29045776,-,AluSx1,SINE,Alu,-6,306,1,29045476,29045776 -6 - chr22 29045937 29046035 chr22,29045937,29046035,+,MER5A1,DNA,hAT-Charlie,1,96,-70,29045937,29046105 +6 + chr22 29046297 29046352 chr22,29046297,29046352,-,MIRb,SINE,MIR,-16,252,189,29046281,29046540 -6 - chr22 29047126 29047255 chr22,29047126,29047255,+,AluJr,SINE,Alu,153,281,-31,29046974,29047286 +6 + chr22 29047256 29047447 chr22,29047256,29047447,-,L1MC4,LINE,L1,-6,8036,7853,29047250,29055299 -6 - chr22 29047501 29047691 chr22,29047501,29047691,+,MIRb,SINE,MIR,23,234,-34,29047479,29047725 +6 + chr22 29048654 29048847 chr22,29048654,29048847,+,MIRc,SINE,MIR,32,214,-54,29048623,29048901 +6 + chr22 29049823 29049849 chr22,29049823,29049849,+,(GCA)n,Simple_repeat,Simple_repeat,1,26,0,29049823,29049849 +6 + chr22 29050999 29051224 chr22,29050999,29051224,+,L2,LINE,L2,2255,2493,-926,29048745,29052150 +6 + chr22 29051256 29051624 chr22,29051256,29051624,+,AluSz6,SINE,Alu,2,303,-9,29051255,29051633 +6 + chr22 29051624 29051899 chr22,29051624,29051899,+,AluSx1,SINE,Alu,1,301,-11,29051624,29051910 +6 + chr22 29052002 29052098 chr22,29052002,29052098,-,MER5C,DNA,hAT-Charlie,-89,224,126,29051913,29052223 -6 - chr22 29052169 29052400 chr22,29052169,29052400,+,L2,LINE,L2,2626,2875,-544,29049544,29052944 +6 + chr22 29052412 29052708 chr22,29052412,29052708,+,AluSc,SINE,Alu,1,296,-13,29052412,29052721 +6 + chr22 29052723 29052983 chr22,29052723,29052983,+,AluJr,SINE,Alu,33,297,-15,29052691,29052998 +6 + chr22 29054975 29054995 chr22,29054975,29054995,+,(GA)n,Simple_repeat,Simple_repeat,1,20,0,29054975,29054995 +6 + chr22 29055261 29055283 chr22,29055261,29055283,+,(ATTC)n,Simple_repeat,Simple_repeat,1,22,0,29055261,29055283 +6 + chr22 29056106 29056400 chr22,29056106,29056400,-,AluSp,SINE,Alu,-18,295,1,29056088,29056400 -6 - chr22 29057769 29058104 chr22,29057769,29058104,-,AluY,SINE,Alu,0,311,1,29057769,29058104 -6 - chr22 29058133 29058433 chr22,29058133,29058433,+,AluJr,SINE,Alu,1,308,-4,29058133,29058437 +6 + chr22 29059286 29059443 chr22,29059286,29059443,-,MIRc,SINE,MIR,-17,251,68,29059269,29059510 -6 - chr22 29059480 29059659 chr22,29059480,29059659,-,MIR,SINE,MIR,-26,236,40,29059454,29059698 -6 - chr22 29059760 29059782 chr22,29059760,29059782,+,(TG)n,Simple_repeat,Simple_repeat,1,22,0,29059760,29059782 +6 + chr22 29060008 29060319 chr22,29060008,29060319,-,AluJo,SINE,Alu,0,312,14,29060008,29060332 -6 - chr22 29061285 29061564 chr22,29061285,29061564,-,AluSp,SINE,Alu,-32,281,2,29061253,29061565 -6 - chr22 29061848 29061923 chr22,29061848,29061923,+,(TT)n,Simple_repeat,Simple_repeat,1,75,0,29061848,29061923 +6 + chr22 29063192 29063463 chr22,29063192,29063463,-,AluSz6,SINE,Alu,-40,272,1,29063152,29063463 -6 - chr22 29063654 29063864 chr22,29063654,29063864,-,MIRb,SINE,MIR,-3,265,43,29063651,29063906 -6 - chr22 29063864 29064167 chr22,29063864,29064167,-,AluSq2,SINE,Alu,-10,303,1,29063854,29064167 -6 - chr22 29064167 29064184 chr22,29064167,29064184,-,MIRb,SINE,MIR,-226,42,26,29063941,29064209 -6 - chr22 29064341 29064500 chr22,29064341,29064500,+,MIRb,SINE,MIR,98,253,-15,29064244,29064515 +6 + chr22 29064467 29064505 chr22,29064467,29064505,+,L2c,LINE,L2,3338,3373,-14,29061130,29064519 +6 + chr22 29064506 29064675 chr22,29064506,29064675,-,AluJb,SINE,Alu,-5,307,135,29064501,29064809 -6 - chr22 29064675 29064721 chr22,29064675,29064721,+,(T)n,Simple_repeat,Simple_repeat,1,46,0,29064675,29064721 +6 + chr22 29064721 29064831 chr22,29064721,29064831,-,AluJb,SINE,Alu,-193,119,6,29064528,29064836 -6 - chr22 29064849 29065152 chr22,29064849,29065152,-,AluSg,SINE,Alu,-8,302,1,29064841,29065152 -6 - chr22 29065292 29065424 chr22,29065292,29065424,+,FLAM_C,SINE,Alu,1,133,-10,29065292,29065434 +6 + chr22 29066041 29066103 chr22,29066041,29066103,+,(TCTTCCT)n,Simple_repeat,Simple_repeat,1,62,0,29066041,29066103 +6 + chr22 29066508 29066860 chr22,29066508,29066860,-,AluSx1,SINE,Alu,0,312,1,29066508,29066860 -6 - chr22 29066910 29066976 chr22,29066910,29066976,+,L2,LINE,L2,2413,2478,-941,29064498,29067917 +6 + chr22 29067050 29067361 chr22,29067050,29067361,-,MER96B,DNA,hAT-Tip100,-171,246,1,29066879,29067361 -6 - chr22 29067393 29067429 chr22,29067393,29067429,+,(TAT)n,Simple_repeat,Simple_repeat,1,37,0,29067393,29067429 +6 + chr22 29067429 29067741 chr22,29067429,29067741,-,AluSx,SINE,Alu,0,312,3,29067429,29067743 -6 - chr22 29067741 29067754 chr22,29067741,29067754,+,(TAT)n,Simple_repeat,Simple_repeat,2,14,0,29067740,29067754 +6 + chr22 29067755 29067909 chr22,29067755,29067909,-,AluJr,SINE,Alu,-25,287,137,29067730,29068045 -6 - chr22 29067932 29068061 chr22,29067932,29068061,+,FAM,SINE,Alu,3,140,-45,29067930,29068106 +6 + chr22 29068084 29068387 chr22,29068084,29068387,-,AluSz,SINE,Alu,-13,299,3,29068071,29068389 -6 - chr22 29068408 29068708 chr22,29068408,29068708,-,AluY,SINE,Alu,-10,301,2,29068398,29068709 -6 - chr22 29068759 29069061 chr22,29068759,29069061,-,AluSg,SINE,Alu,-7,303,1,29068752,29069061 -6 - chr22 29069061 29069288 chr22,29069061,29069288,+,MIR,SINE,MIR,9,259,-3,29069053,29069291 +6 + chr22 29069832 29069940 chr22,29069832,29069940,+,MER45A,DNA,hAT-Tip100,2,102,-76,29069831,29070016 +6 + chr22 29069940 29070246 chr22,29069940,29070246,-,AluSx1,SINE,Alu,-7,305,1,29069933,29070246 -6 - chr22 29070246 29070329 chr22,29070246,29070329,+,MER45A,DNA,hAT-Tip100,103,177,-1,29070144,29070330 +6 + chr22 29070604 29070781 chr22,29070604,29070781,+,AluJr,SINE,Alu,129,305,-7,29070476,29070788 +6 + chr22 29070843 29070956 chr22,29070843,29070956,+,L2a,LINE,L2,3286,3425,-1,29067558,29070957 +6 + chr22 29070964 29071022 chr22,29070964,29071022,-,MIRb,SINE,MIR,-16,252,183,29070948,29071204 -6 - chr22 29071885 29072037 chr22,29071885,29072037,-,MIRb,SINE,MIR,-38,230,67,29071847,29072103 -6 - chr22 29072078 29072135 chr22,29072078,29072135,-,MIR,SINE,MIR,-9,253,205,29072069,29072339 -6 - chr22 29072135 29072427 chr22,29072135,29072427,-,AluJo,SINE,Alu,-3,309,2,29072132,29072428 -6 - chr22 29072427 29072601 chr22,29072427,29072601,-,MIR,SINE,MIR,-58,204,10,29072369,29072610 -6 - chr22 29072947 29073031 chr22,29072947,29073031,+,G-rich,Low_complexity,Low_complexity,1,86,0,29072947,29073031 +6 + chr22 29074729 29074923 chr22,29074729,29074923,+,MIRb,SINE,MIR,28,251,-11,29074702,29074934 +6 + chr22 29075698 29075736 chr22,29075698,29075736,+,(AC)n,Simple_repeat,Simple_repeat,1,38,0,29075698,29075736 +6 + chr22 29076568 29076874 chr22,29076568,29076874,+,AluSq2,SINE,Alu,1,305,-8,29076568,29076882 +6 + chr22 29077164 29077347 chr22,29077164,29077347,-,MER58B,DNA,hAT-Charlie,0,341,148,29077164,29077494 -6 - chr22 29077347 29077564 chr22,29077347,29077564,-,AluSx,SINE,Alu,-13,299,85,29077334,29077648 -6 - chr22 29077564 29077725 chr22,29077564,29077725,-,MER58B,DNA,hAT-Charlie,-184,157,1,29077380,29077725 -6 - chr22 29077854 29077901 chr22,29077854,29077901,+,L1MB3,LINE,L1,6127,6176,-7,29071728,29077908 +6 + chr22 29077969 29078284 chr22,29077969,29078284,+,AluJb,SINE,Alu,1,309,-3,29077969,29078287 +6 + chr22 29078482 29078517 chr22,29078482,29078517,+,A-rich,Low_complexity,Low_complexity,1,35,0,29078482,29078517 +6 + chr22 29080703 29080916 chr22,29080703,29080916,+,MER20,DNA,hAT-Charlie,1,219,0,29080703,29080916 +6 + chr22 29080927 29080962 chr22,29080927,29080962,+,(T)n,Simple_repeat,Simple_repeat,1,35,0,29080927,29080962 +6 + chr22 29080993 29081150 chr22,29080993,29081150,-,L1PA4,LINE,L1,-1,6154,5994,29080992,29087143 -6 - chr22 29081339 29081523 chr22,29081339,29081523,-,MER53,DNA,hAT,-5,188,1,29081334,29081523 -6 - chr22 29081893 29082086 chr22,29081893,29082086,-,MamRTE1,LINE,RTE-BovB,-383,3429,3219,29081510,29085304 -6 - chr22 29082205 29082234 chr22,29082205,29082234,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,29,0,29082205,29082234 +6 + chr22 29082236 29082356 chr22,29082236,29082356,-,AluJr,SINE,Alu,-197,115,1,29082039,29082356 -6 - chr22 29082583 29082733 chr22,29082583,29082733,-,L2c,LINE,L2,-1,3386,3222,29082582,29085954 -6 - chr22 29082948 29083123 chr22,29082948,29083123,-,AluJo,SINE,Alu,-23,289,87,29082925,29083209 -6 - chr22 29083477 29083549 chr22,29083477,29083549,-,MER41B,LTR,ERV1,0,634,569,29083477,29084117 -6 - chr22 29083549 29083848 chr22,29083549,29083848,+,AluSx1,SINE,Alu,1,300,-12,29083549,29083860 +6 + chr22 29083848 29084408 chr22,29083848,29084408,-,MER41B,LTR,ERV1,-66,568,5,29083782,29084412 -6 - chr22 29085210 29085657 chr22,29085210,29085657,-,L1MC5,LINE,L1,-9,9295,8816,29085201,29094472 -6 - chr22 29085692 29085981 chr22,29085692,29085981,+,AluJo,SINE,Alu,1,293,-19,29085692,29086000 +6 + chr22 29086203 29086316 chr22,29086203,29086316,-,MIR3,SINE,MIR,-30,178,74,29086173,29086389 -6 - chr22 29086770 29086914 chr22,29086770,29086914,-,AluJo,SINE,Alu,-24,288,133,29086746,29087046 -6 - chr22 29086914 29086942 chr22,29086914,29086942,+,(TTTTAA)n,Simple_repeat,Simple_repeat,1,28,0,29086914,29086942 +6 + chr22 29086942 29087050 chr22,29086942,29087050,-,AluJo,SINE,Alu,-193,119,13,29086749,29087062 -6 - chr22 29087570 29087864 chr22,29087570,29087864,-,AluSp,SINE,Alu,-17,296,1,29087553,29087864 -6 - chr22 29088306 29088339 chr22,29088306,29088339,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,29088306,29088339 +6 + chr22 29088341 29088629 chr22,29088341,29088629,-,AluSz,SINE,Alu,-26,286,1,29088315,29088629 -6 - chr22 29088714 29088938 chr22,29088714,29088938,-,MIRb,SINE,MIR,0,268,4,29088714,29088941 -6 - chr22 29088978 29090147 chr22,29088978,29090147,+,L2a,LINE,L2,2140,3426,0,29086839,29090147 +6 + chr22 29090316 29090533 chr22,29090316,29090533,+,L1PA14,LINE,L1,5928,6158,-3,29084389,29090536 +6 + chr22 29090534 29090660 chr22,29090534,29090660,+,L1M2,LINE,L1,5554,5681,-619,29084981,29091279 +6 + chr22 29090971 29091272 chr22,29090971,29091272,-,AluSp,SINE,Alu,-11,302,1,29090960,29091272 -6 - chr22 29091465 29091503 chr22,29091465,29091503,-,L1MA9,LINE,L1,-42,6270,6233,29091423,29097735 -6 - chr22 29091598 29091673 chr22,29091598,29091673,-,MER5B,DNA,hAT-Charlie,-1,177,103,29091597,29091775 -6 - chr22 29091733 29091755 chr22,29091733,29091755,+,(TC)n,Simple_repeat,Simple_repeat,1,22,0,29091733,29091755 +6 + chr22 29091895 29092283 chr22,29091895,29092283,-,L2,LINE,L2,-386,3033,2555,29091509,29094837 -6 - chr22 29092317 29092440 chr22,29092317,29092440,+,MIR,SINE,MIR,115,254,-8,29092203,29092448 +6 + chr22 29092460 29092561 chr22,29092460,29092561,-,MIRc,SINE,MIR,-164,104,2,29092296,29092562 -6 - chr22 29092697 29092999 chr22,29092697,29092999,+,AluSx1,SINE,Alu,5,308,-4,29092693,29093003 +6 + chr22 29094572 29094615 chr22,29094572,29094615,+,(AC)n,Simple_repeat,Simple_repeat,1,43,0,29094572,29094615 +6 + chr22 29094626 29094923 chr22,29094626,29094923,-,AluY,SINE,Alu,-15,296,1,29094611,29094923 -6 - chr22 29095329 29095404 chr22,29095329,29095404,+,Charlie24,DNA,hAT-Charlie,2374,2450,0,29092956,29095404 +6 + chr22 29097590 29097621 chr22,29097590,29097621,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,29097590,29097621 +6 + chr22 29097730 29097834 chr22,29097730,29097834,-,L1ME4a,LINE,L1,-59,6065,5970,29097671,29103803 -6 - chr22 29097899 29098197 chr22,29097899,29098197,+,AluSx1,SINE,Alu,1,294,-18,29097899,29098215 +6 + chr22 29098254 29098515 chr22,29098254,29098515,-,L1ME4a,LINE,L1,-319,5805,5518,29097935,29104032 -6 - chr22 29099539 29099846 chr22,29099539,29099846,-,AluSc,SINE,Alu,0,309,2,29099539,29099847 -6 - chr22 29099941 29099990 chr22,29099941,29099990,+,Tigger3d,DNA,TcMar-Tigger,1,65,-256,29099941,29100246 +6 + chr22 29099980 29100094 chr22,29099980,29100094,+,HY1,scRNA,scRNA,4,109,-10,29099977,29100104 +6 + chr22 29100094 29100396 chr22,29100094,29100396,-,AluSx,SINE,Alu,-15,297,18,29100079,29100413 -6 - chr22 29100420 29100969 chr22,29100420,29100969,+,Tigger3b,DNA,TcMar-Tigger,65,618,-613,29100356,29101582 +6 + chr22 29100969 29101275 chr22,29100969,29101275,+,AluSz6,SINE,Alu,1,306,-6,29100969,29101281 +6 + chr22 29101275 29101893 chr22,29101275,29101893,+,Tigger3b,DNA,TcMar-Tigger,619,1230,-1,29100657,29101894 +6 + chr22 29103712 29104063 chr22,29103712,29104063,+,L1MC5a,LINE,L1,2409,2772,-5,29101304,29104068 +6 + chr22 29104157 29104455 chr22,29104157,29104455,-,AluJb,SINE,Alu,-12,300,1,29104145,29104455 -6 - chr22 29104624 29104914 chr22,29104624,29104914,+,AluSx,SINE,Alu,1,303,-9,29104624,29104923 +6 + chr22 29104953 29105221 chr22,29104953,29105221,-,L2c,LINE,L2,-10,3377,3115,29104943,29108335 -6 - chr22 29105221 29105367 chr22,29105221,29105367,-,MER5A1,DNA,hAT-Charlie,-1,165,1,29105220,29105367 -6 - chr22 29105367 29105463 chr22,29105367,29105463,-,L2c,LINE,L2,-273,3114,3011,29105094,29108473 -6 - chr22 29105463 29105512 chr22,29105463,29105512,+,(CA)n,Simple_repeat,Simple_repeat,1,49,0,29105463,29105512 +6 + chr22 29105512 29105610 chr22,29105512,29105610,-,L2c,LINE,L2,-377,3010,2913,29105135,29108522 -6 - chr22 29106177 29106218 chr22,29106177,29106218,-,MIRc,SINE,MIR,-27,241,210,29106150,29106427 -6 - chr22 29106218 29106490 chr22,29106218,29106490,-,AluY,SINE,Alu,-10,301,39,29106208,29106528 -6 - chr22 29106490 29106672 chr22,29106490,29106672,-,MIRc,SINE,MIR,-59,209,20,29106431,29106691 -6 - chr22 29107218 29107518 chr22,29107218,29107518,-,AluSq4,SINE,Alu,-8,303,2,29107210,29107519 -6 - chr22 29107601 29107810 chr22,29107601,29107810,+,AluJo,SINE,Alu,1,222,-90,29107601,29107900 +6 + chr22 29107811 29107922 chr22,29107811,29107922,+,MamRep1879,DNA,hAT-Tip100?,91,216,0,29107721,29107922 +6 + chr22 29108003 29108298 chr22,29108003,29108298,+,AluSq2,SINE,Alu,1,294,-19,29108003,29108317 +6 + chr22 29108370 29108569 chr22,29108370,29108569,+,MIRb,SINE,MIR,22,250,-18,29108349,29108587 +6 + chr22 29108789 29109088 chr22,29108789,29109088,-,AluJo,SINE,Alu,-12,300,2,29108777,29109089 -6 - chr22 29110046 29110411 chr22,29110046,29110411,-,MLT1H2,LTR,ERVL-MaLR,-6,483,105,29110040,29110515 -6 - chr22 29110698 29110770 chr22,29110698,29110770,-,L2a,LINE,L2,-445,2981,2913,29110253,29113682 -6 - chr22 29111056 29111327 chr22,29111056,29111327,+,AluJr,SINE,Alu,33,301,-11,29111024,29111338 +6 + chr22 29111581 29111637 chr22,29111330,29111637,+,AluY,SINE,Alu,1,305,-6,29111330,29111643 -4 + chr22 29111330 29111637 chr22,29111330,29111637,+,AluY,SINE,Alu,1,305,-6,29111330,29111643 +6 + chr22 29111917 29112294 chr22,29111917,29112294,-,MLT1O,LTR,ERVL-MaLR,-18,524,143,29111899,29112436 -6 - chr22 29113132 29113355 chr22,29113132,29113355,+,MIRc,SINE,MIR,22,265,-3,29113111,29113358 +6 + chr22 29113504 29113651 chr22,29113504,29113651,-,MIRb,SINE,MIR,-12,256,107,29113492,29113757 -6 - chr22 29113956 29114004 chr22,29113956,29114004,+,L3,LINE,CR1,4047,4094,-5,29109910,29114009 +6 + chr22 29114008 29114024 chr22,29114008,29114024,+,Tigger15a,DNA,TcMar-Tigger,327,340,-375,29113682,29114399 +6 + chr22 29114024 29114201 chr22,29114024,29114201,+,MLT1A,LTR,ERVL-MaLR,1,156,-218,29114024,29114419 +6 + chr22 29114201 29114506 chr22,29114201,29114506,+,AluSq2,SINE,Alu,1,303,-10,29114201,29114516 +6 + chr22 29114506 29114716 chr22,29114506,29114716,+,MLT1A,LTR,ERVL-MaLR,157,374,0,29114350,29114716 +6 + chr22 29114716 29114789 chr22,29114716,29114789,+,Tigger15a,DNA,TcMar-Tigger,341,409,-306,29114376,29115095 +6 + chr22 29114800 29114961 chr22,29114800,29114961,+,Tigger15a,DNA,TcMar-Tigger,497,673,-42,29114304,29115003 +6 + chr22 29115117 29115442 chr22,29115117,29115442,+,L1PB1,LINE,L1,5828,6151,0,29109290,29115442 +6 + chr22 29115505 29116031 chr22,29115505,29116031,-,L2c,LINE,L2,-2,3385,2838,29115503,29118868 -6 - chr22 29116043 29116175 chr22,29116043,29116175,+,L2c,LINE,L2,2921,3075,-312,29113123,29116487 +6 + chr22 29116168 29116363 chr22,29116168,29116363,-,L2c,LINE,L2,-606,2813,2618,29115562,29118980 -6 - chr22 29117138 29117164 chr22,29117138,29117164,+,(GT)n,Simple_repeat,Simple_repeat,1,26,0,29117138,29117164 +6 + chr22 29117285 29117581 chr22,29117285,29117581,+,AluY,SINE,Alu,1,296,-15,29117285,29117596 +6 + chr22 29117871 29118412 chr22,29117871,29118412,-,MLT1F2,LTR,ERVL-MaLR,-8,552,33,29117863,29118444 -6 - chr22 29118412 29118748 chr22,29118412,29118748,-,MLT1A,LTR,ERVL-MaLR,0,374,24,29118412,29118771 -6 - chr22 29118756 29119059 chr22,29118756,29119059,-,MER21C,LTR,ERVL,-6,932,569,29118750,29119627 -6 - chr22 29119065 29119201 chr22,29119065,29119201,+,AluJo,SINE,Alu,1,134,-178,29119065,29119379 +6 + chr22 29119197 29119621 chr22,29119197,29119621,-,MER21C,LTR,ERVL,-361,577,121,29118836,29119741 -6 - chr22 29119786 29119998 chr22,29119786,29119998,+,MLT1D,LTR,ERVL-MaLR,1,236,-269,29119786,29120267 +6 + chr22 29120558 29120891 chr22,29120558,29120891,+,MLT1D,LTR,ERVL-MaLR,180,505,0,29120379,29120891 +6 + chr22 29121559 29121857 chr22,29121559,29121857,+,L1MB7,LINE,L1,5870,6184,0,29115690,29121857 +6 + chr22 29121860 29122657 chr22,29121860,29122657,+,L1ME1,LINE,L1,5022,5840,-339,29116839,29122996 +6 + chr22 29122657 29122966 chr22,29122657,29122966,+,AluSg,SINE,Alu,1,306,-4,29122657,29122970 +6 + chr22 29122966 29123047 chr22,29122966,29123047,+,L1ME1,LINE,L1,5841,5909,-270,29117126,29123317 +6 + chr22 29123047 29123511 chr22,29123047,29123511,+,L1ME1,LINE,L1,4987,5397,-782,29118061,29124293 +6 + chr22 29123511 29123818 chr22,29123511,29123818,+,AluSz6,SINE,Alu,3,311,-1,29123509,29123819 +6 + chr22 29123818 29124492 chr22,29123818,29124492,+,L1ME1,LINE,L1,5398,6073,-106,29118421,29124598 +6 + chr22 29124492 29124791 chr22,29124492,29124791,-,AluSx1,SINE,Alu,-12,300,2,29124480,29124792 -6 - chr22 29124791 29124847 chr22,29124791,29124847,+,L1ME1,LINE,L1,6074,6127,-52,29118718,29124899 +6 + chr22 29124872 29124972 chr22,29124872,29124972,+,MIR,SINE,MIR,134,262,0,29124739,29124972 +6 + chr22 29125505 29125619 chr22,29125505,29125619,-,L2b,LINE,L2,0,3387,3257,29125505,29128875 -6 - chr22 29125849 29126013 chr22,29125849,29126013,-,MamSINE1,SINE,tRNA-RTE,-57,233,12,29125792,29126024 -6 - chr22 29126253 29126665 chr22,29126253,29126665,-,MLT1C,LTR,ERVL-MaLR,-2,465,8,29126251,29126672 -6 - chr22 29127101 29127270 chr22,29127101,29127270,-,MIR,SINE,MIR,-10,252,74,29127091,29127343 -6 - chr22 29127340 29127462 chr22,29127340,29127462,+,L1MB7,LINE,L1,5460,5583,-585,29121881,29128047 +6 + chr22 29127462 29127668 chr22,29127462,29127668,+,AluSx,SINE,Alu,85,298,-14,29127378,29127682 +6 + chr22 29127668 29128207 chr22,29127668,29128207,+,L1MB7,LINE,L1,5576,6122,-62,29122093,29128269 +6 + chr22 29128208 29128271 chr22,29128208,29128271,+,MER47C,DNA,TcMar-Tigger,2,65,-32,29128207,29128303 +6 + chr22 29128255 29128357 chr22,29128255,29128357,+,Tigger5b,DNA,TcMar-Tigger,373,472,0,29127883,29128357 +6 + chr22 29128665 29128862 chr22,29128665,29128862,-,MIRb,SINE,MIR,-11,257,19,29128654,29128880 -6 - chr22 29129208 29129356 chr22,29129208,29129356,+,AluSx,SINE,Alu,141,292,-20,29129068,29129376 +6 + chr22 29130066 29130236 chr22,29130066,29130236,-,MIRb,SINE,MIR,-11,257,85,29130055,29130320 -6 - chr22 29130229 29130287 chr22,29130229,29130287,-,L2a,LINE,L2,-84,3342,3283,29130145,29133569 -6 - chr22 29130348 29130510 chr22,29130348,29130510,-,MER104,DNA,TcMar-Tc2,-2,179,1,29130346,29130510 -6 - chr22 29131080 29131304 chr22,29131080,29131304,-,MIR,SINE,MIR,-3,259,31,29131077,29131334 -6 - chr22 29131311 29131521 chr22,29131311,29131521,-,L1ME1,LINE,L1,0,6179,5956,29131311,29137476 -6 - chr22 29131523 29131561 chr22,29131523,29131561,+,(AT)n,Simple_repeat,Simple_repeat,1,38,0,29131523,29131561 +6 + chr22 29131561 29131645 chr22,29131561,29131645,+,(GT)n,Simple_repeat,Simple_repeat,1,84,0,29131561,29131645 +6 + chr22 29131778 29131865 chr22,29131778,29131865,-,L1ME1,LINE,L1,-227,5952,5864,29131551,29137728 -6 - chr22 29131865 29132171 chr22,29131865,29132171,-,AluSp,SINE,Alu,-6,307,1,29131859,29132171 -6 - chr22 29132171 29132681 chr22,29132171,29132681,-,L1ME1,LINE,L1,-316,5863,5353,29131855,29138033 -6 - chr22 29132659 29132966 chr22,29132659,29132966,-,L1MCc,LINE,L1,-4594,2443,2131,29128065,29135096 -6 - chr22 29132966 29133275 chr22,29132966,29133275,+,AluYf1,SINE,Alu,1,309,-2,29132966,29133277 +6 + chr22 29133275 29133303 chr22,29133275,29133303,-,L1MCc,LINE,L1,-4907,2130,2123,29128368,29135425 -6 - chr22 29133303 29133598 chr22,29133303,29133598,-,AluJo,SINE,Alu,-16,296,3,29133287,29133600 -6 - chr22 29133598 29134013 chr22,29133598,29134013,-,L1MCc,LINE,L1,-4915,2122,1751,29128683,29135763 -6 - chr22 29134013 29134118 chr22,29134013,29134118,+,U6,snRNA,snRNA,1,105,-2,29134013,29134120 +6 + chr22 29134159 29134456 chr22,29134159,29134456,-,AluJr,SINE,Alu,-14,298,1,29134145,29134456 -6 - chr22 29134456 29135923 chr22,29134456,29135923,-,L1MCc,LINE,L1,-4946,1477,54,29129510,29135976 -6 - chr22 29135923 29136219 chr22,29135923,29136219,-,AluSx,SINE,Alu,-14,298,3,29135909,29136221 -6 - chr22 29136219 29136259 chr22,29136219,29136259,-,L1MCc,LINE,L1,-6370,53,17,29129849,29136275 -6 - chr22 29136291 29136594 chr22,29136291,29136594,+,AluY,SINE,Alu,1,301,-10,29136291,29136604 +6 + chr22 29138276 29138370 chr22,29138276,29138370,-,L2a,LINE,L2,-266,3121,3023,29138010,29141392 -6 - chr22 29139139 29139319 chr22,29139139,29139319,-,L2a,LINE,L2,0,3426,3216,29139139,29142534 -6 - chr22 29139319 29139623 chr22,29139319,29139623,+,AluJr,SINE,Alu,1,303,-9,29139319,29139632 +6 + chr22 29139623 29139720 chr22,29139623,29139720,+,AluJo,SINE,Alu,134,230,-82,29139490,29139802 +6 + chr22 29139912 29140053 chr22,29139912,29140053,-,MIRc,SINE,MIR,-120,148,3,29139792,29140055 -6 - chr22 29141226 29141320 chr22,29141226,29141320,+,(GT)n,Simple_repeat,Simple_repeat,1,94,0,29141226,29141320 +6 + chr22 29141549 29141661 chr22,29141549,29141661,+,Charlie15a,DNA,hAT-Charlie,110,220,-4,29141440,29141665 +6 + chr22 29141661 29141844 chr22,29141661,29141844,-,L3,LINE,CR1,-144,3955,3749,29141517,29145592 -6 - chr22 29142198 29142231 chr22,29142198,29142231,+,(CTCTGC)n,Simple_repeat,Simple_repeat,1,34,0,29142198,29142231 +6 + chr22 29142868 29143180 chr22,29142868,29143180,+,AluSq2,SINE,Alu,2,313,0,29142867,29143180 +6 + chr22 29143460 29143755 chr22,29143460,29143755,+,AluY,SINE,Alu,1,295,-16,29143460,29143771 +6 + chr22 29147078 29147239 chr22,29147078,29147239,+,MIRb,SINE,MIR,27,217,-51,29147052,29147290 +6 + chr22 29147345 29147483 chr22,29147345,29147483,-,MIRb,SINE,MIR,-2,266,113,29147343,29147595 -6 - chr22 29147568 29147740 chr22,29147568,29147740,-,L2,LINE,L2,-549,2870,2691,29147019,29150430 -6 - chr22 29147794 29147961 chr22,29147794,29147961,+,MIR,SINE,MIR,20,198,-64,29147775,29148025 +6 + chr22 29148007 29148228 chr22,29148007,29148228,-,L2,LINE,L2,-812,2607,2379,29147195,29150606 -6 - chr22 29148447 29148752 chr22,29148447,29148752,-,AluSx1,SINE,Alu,-5,307,3,29148442,29148754 -6 - chr22 29148990 29149049 chr22,29148990,29149049,+,MER5A,DNA,hAT-Charlie,57,116,-73,29148934,29149122 +6 + chr22 29149169 29149460 chr22,29149169,29149460,-,AluSc,SINE,Alu,-18,291,1,29149151,29149460 -6 - chr22 29150767 29150868 chr22,29150767,29150868,-,MIRb,SINE,MIR,-2,266,166,29150765,29151033 -6 - chr22 29151096 29151248 chr22,29151096,29151248,-,Charlie4z,DNA,hAT-Charlie,-6,161,2,29151090,29151249 -6 - chr22 29151372 29151444 chr22,29151372,29151444,-,MER58B,DNA,hAT-Charlie,0,341,270,29151372,29151713 -6 - chr22 29151569 29151727 chr22,29151569,29151727,-,MER58B,DNA,hAT-Charlie,-111,230,77,29151458,29151803 -6 - chr22 29151727 29152026 chr22,29151727,29152026,+,AluSz,SINE,Alu,1,299,-13,29151727,29152039 +6 + chr22 29152700 29152775 chr22,29152700,29152775,-,AluJb,SINE,Alu,-8,304,230,29152692,29153004 -6 - chr22 29152775 29153407 chr22,29152775,29153407,-,MER41B,LTR,ERV1,-38,596,1,29152737,29153407 -6 - chr22 29153407 29153657 chr22,29153407,29153657,-,AluJb,SINE,Alu,-71,241,2,29153336,29153658 -6 - chr22 29153658 29153698 chr22,29153658,29153698,+,MIRb,SINE,MIR,115,151,-117,29153544,29153815 +6 + chr22 29153698 29153992 chr22,29153698,29153992,+,AluSx,SINE,Alu,1,305,-7,29153698,29153999 +6 + chr22 29153992 29154094 chr22,29153992,29154094,+,MIRb,SINE,MIR,152,253,-15,29153841,29154109 +6 + chr22 29154520 29154580 chr22,29154520,29154580,+,(CCG)n,Simple_repeat,Simple_repeat,1,62,0,29154520,29154580 +6 + chr22 29154716 29154838 chr22,29154716,29154838,+,FLAM_A,SINE,Alu,1,133,-9,29154716,29154847 +6 + chr22 29155252 29155551 chr22,29155252,29155551,+,AluJb,SINE,Alu,1,299,-13,29155252,29155564 +6 + chr22 29155676 29155974 chr22,29155676,29155974,+,AluSq,SINE,Alu,1,298,-15,29155676,29155989 +6 + chr22 29156785 29156933 chr22,29156785,29156933,-,MIRb,SINE,MIR,-14,254,110,29156771,29157042 -6 - chr22 29156977 29157062 chr22,29156977,29157062,-,MIRc,SINE,MIR,-148,120,31,29156829,29157092 -6 - chr22 29157269 29157328 chr22,29157269,29157328,-,MIR3,SINE,MIR,-61,147,84,29157208,29157411 -6 - chr22 29157334 29157637 chr22,29157334,29157637,-,AluSz,SINE,Alu,-10,302,1,29157324,29157637 -6 - chr22 29157882 29158069 chr22,29157882,29158069,-,MLT1J2,LTR,ERVL-MaLR,-249,195,1,29157633,29158069 -6 - chr22 29158500 29158670 chr22,29158500,29158670,+,MER45A,DNA,hAT-Tip100,1,178,0,29158500,29158670 +6 + chr22 29158821 29159119 chr22,29158821,29159119,-,AluSx1,SINE,Alu,-6,306,1,29158815,29159119 -6 - chr22 29159132 29159265 chr22,29159132,29159265,-,FLAM_C,SINE,Alu,-10,133,1,29159122,29159265 -6 - chr22 29159319 29159338 chr22,29159319,29159338,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,19,0,29159319,29159338 +6 + chr22 29159338 29159646 chr22,29159338,29159646,+,AluSz,SINE,Alu,1,310,-2,29159338,29159648 +6 + chr22 29159646 29159658 chr22,29159646,29159658,+,(AAAAC)n,Simple_repeat,Simple_repeat,5,17,0,29159642,29159658 +6 + chr22 29159943 29160248 chr22,29159943,29160248,+,L1PA16,LINE,L1,2530,2824,-3322,29157414,29163570 +6 + chr22 29160248 29160563 chr22,29160248,29160563,+,AluSx1,SINE,Alu,1,306,-6,29160248,29160569 +6 + chr22 29160563 29161225 chr22,29160563,29161225,+,L1PA16,LINE,L1,2825,3490,-2656,29157739,29163881 +6 + chr22 29161225 29161531 chr22,29161225,29161531,+,AluY,SINE,Alu,1,306,-5,29161225,29161536 +6 + chr22 29161531 29161836 chr22,29161531,29161836,+,L1PA16,LINE,L1,3491,3782,-2364,29158041,29164200 +6 + chr22 29161836 29162130 chr22,29161836,29162130,+,AluSz6,SINE,Alu,1,296,-16,29161836,29162146 +6 + chr22 29162130 29162434 chr22,29162130,29162434,+,L1PA16,LINE,L1,3783,4093,-2053,29158348,29164487 +6 + chr22 29162434 29162740 chr22,29162434,29162740,+,AluSq,SINE,Alu,1,311,-2,29162434,29162742 +6 + chr22 29162740 29163015 chr22,29162740,29163015,+,L1PA16,LINE,L1,5626,5948,-218,29157115,29163233 +6 + chr22 29163015 29163371 chr22,29163015,29163371,+,THE1D,LTR,ERVL-MaLR,1,347,-34,29163015,29163405 +6 + chr22 29163371 29163676 chr22,29163371,29163676,-,AluSz,SINE,Alu,-7,305,1,29163364,29163676 -6 - chr22 29163676 29163717 chr22,29163676,29163717,+,THE1D,LTR,ERVL-MaLR,348,381,0,29163329,29163717 +6 + chr22 29163717 29163939 chr22,29163717,29163939,+,L1PA16,LINE,L1,5949,6164,-2,29157769,29163941 +6 + chr22 29163942 29164113 chr22,29163942,29164113,-,FAM,SINE,Alu,-35,150,1,29163907,29164113 -6 - chr22 29164305 29164410 chr22,29164305,29164410,+,LTR88b,LTR,Gypsy?,136,247,-590,29164170,29165000 +6 + chr22 29164441 29164506 chr22,29164441,29164506,-,MLT1F,LTR,ERVL-MaLR,0,569,510,29164441,29165015 -6 - chr22 29164506 29164768 chr22,29164506,29164768,+,AluSq,SINE,Alu,42,305,-8,29164465,29164776 +6 + chr22 29164768 29164830 chr22,29164768,29164830,-,MLT1F,LTR,ERVL-MaLR,-60,509,456,29164708,29165285 -6 - chr22 29164830 29164874 chr22,29164830,29164874,+,Alu,SINE,Alu,1,44,-89,29164830,29164963 +6 + chr22 29164892 29165195 chr22,29164892,29165195,+,AluSx4,SINE,Alu,1,303,-7,29164892,29165202 +6 + chr22 29165195 29165415 chr22,29165195,29165415,+,AluJr4,SINE,Alu,68,296,-16,29165128,29165431 +6 + chr22 29165420 29165562 chr22,29165420,29165562,-,MLT1F,LTR,ERVL-MaLR,-406,142,2,29165014,29165563 -6 - chr22 29165564 29165702 chr22,29165564,29165702,-,MIRc,SINE,MIR,-55,213,40,29165509,29165741 -6 - chr22 29166051 29166185 chr22,29166051,29166185,+,(CA)n,Simple_repeat,Simple_repeat,1,138,0,29166051,29166185 +6 + chr22 29166230 29166350 chr22,29166230,29166350,-,L2b,LINE,L2,-1,3374,3256,29166229,29169605 -6 - chr22 29166602 29166655 chr22,29166602,29166655,-,LTR84b,LTR,ERVL,-59,702,650,29166543,29167304 -6 - chr22 29166656 29166957 chr22,29166656,29166957,+,AluJo,SINE,Alu,1,307,-5,29166656,29166962 +6 + chr22 29167212 29167378 chr22,29167212,29167378,+,FRAM,SINE,Alu,1,166,-10,29167212,29167388 +6 + chr22 29167432 29167562 chr22,29167432,29167562,-,LTR84b,LTR,ERVL,-401,360,231,29167031,29167792 -6 - chr22 29167994 29168054 chr22,29167994,29168054,-,MER45A,DNA,hAT-Tip100,0,178,126,29167994,29168179 -6 - chr22 29168054 29168351 chr22,29168054,29168351,+,AluSz6,SINE,Alu,3,300,-12,29168052,29168363 +6 + chr22 29168352 29168653 chr22,29168352,29168653,+,AluSq2,SINE,Alu,1,301,-12,29168352,29168665 +6 + chr22 29168653 29168793 chr22,29168653,29168793,-,MER45A,DNA,hAT-Tip100,-53,125,4,29168600,29168796 -6 - chr22 29168805 29169240 chr22,29168805,29169240,+,LTR45C,LTR,ERV1,2,483,-56,29168804,29169296 +6 + chr22 29169240 29169537 chr22,29169240,29169537,+,AluSx1,SINE,Alu,1,299,-13,29169240,29169550 +6 + chr22 29169537 29169596 chr22,29169537,29169596,+,LTR45C,LTR,ERV1,484,537,-2,29169054,29169598 +6 + chr22 29170188 29170324 chr22,29170188,29170324,+,AluJo,SINE,Alu,1,136,-176,29170188,29170500 +6 + chr22 29170354 29170586 chr22,29170354,29170586,+,AluJo,SINE,Alu,85,298,-14,29170270,29170600 +6 + chr22 29170703 29171096 chr22,29170703,29171096,-,MER31A,LTR,ERV1,-13,472,28,29170690,29171123 -6 - chr22 29171096 29171380 chr22,29171096,29171380,+,AluSz,SINE,Alu,1,284,-28,29171096,29171408 +6 + chr22 29171380 29171432 chr22,29171380,29171432,-,MER31A,LTR,ERV1,-424,42,9,29170956,29171440 -6 - chr22 29171812 29172406 chr22,29171812,29172406,-,L2c,LINE,L2,-265,3122,2440,29171547,29174845 -6 - chr22 29172715 29172797 chr22,29172715,29172797,-,Charlie1,DNA,hAT-Charlie,-27,2754,2673,29172688,29175469 -6 - chr22 29172797 29173231 chr22,29172797,29173231,+,MLT1D,LTR,ERVL-MaLR,1,453,-52,29172797,29173283 +6 + chr22 29173231 29173539 chr22,29173231,29173539,-,AluY,SINE,Alu,-2,309,1,29173229,29173539 -6 - chr22 29173539 29173604 chr22,29173539,29173604,+,MLT1D,LTR,ERVL-MaLR,454,504,-1,29173086,29173605 +6 + chr22 29173604 29173924 chr22,29173604,29173924,-,Charlie1,DNA,hAT-Charlie,-109,2672,2355,29173495,29176278 -6 - chr22 29173939 29174065 chr22,29173939,29174065,-,AluJb,SINE,Alu,-185,127,2,29173754,29174066 -6 - chr22 29174076 29174256 chr22,29174076,29174256,-,Charlie1,DNA,hAT-Charlie,-433,2348,2164,29173643,29176419 -6 - chr22 29174297 29174396 chr22,29174297,29174396,-,FLAM_A,SINE,Alu,-19,123,24,29174278,29174419 -6 - chr22 29174396 29174518 chr22,29174396,29174518,+,L1M5,LINE,L1,3578,3695,-2451,29170819,29176969 +6 + chr22 29174577 29174669 chr22,29174577,29174669,+,L1MC,LINE,L1,3684,3778,-2368,29170894,29177037 +6 + chr22 29174664 29174717 chr22,29174664,29174717,-,L1M4a2,LINE,L1,-700,1956,1914,29173964,29176630 -6 - chr22 29174717 29175011 chr22,29174717,29175011,-,AluY,SINE,Alu,-6,305,1,29174711,29175011 -6 - chr22 29175011 29175177 chr22,29175011,29175177,-,L1M4a2,LINE,L1,-743,1913,1729,29174268,29176905 -6 - chr22 29175185 29175295 chr22,29175185,29175295,-,FLAM_A,SINE,Alu,-11,131,22,29175174,29175316 -6 - chr22 29175296 29177180 chr22,29175296,29177180,-,L1M4b,LINE,L1,-4824,2043,167,29170472,29177346 -6 - chr22 29177180 29177490 chr22,29177180,29177490,-,AluSx4,SINE,Alu,0,310,1,29177180,29177490 -6 - chr22 29177490 29177503 chr22,29177490,29177503,-,L1M4b,LINE,L1,-6701,166,166,29170789,29177668 -6 - chr22 29177503 29177815 chr22,29177503,29177815,-,AluY,SINE,Alu,0,311,1,29177503,29177815 -6 - chr22 29177815 29177973 chr22,29177815,29177973,-,L1M4b,LINE,L1,-6701,166,11,29171114,29177983 -6 - chr22 29177991 29178069 chr22,29177991,29178069,+,Tigger3a,DNA,TcMar-Tigger,2,75,-273,29177990,29178342 +6 + chr22 29178069 29178367 chr22,29178069,29178367,+,AluJb,SINE,Alu,1,295,-17,29178069,29178384 +6 + chr22 29178367 29178632 chr22,29178367,29178632,+,Tigger3a,DNA,TcMar-Tigger,76,347,-1,29178292,29178633 +6 + chr22 29178650 29178952 chr22,29178650,29178952,+,MER44A,DNA,TcMar-Tigger,1,339,0,29178650,29178952 +6 + chr22 29178952 29179619 chr22,29178952,29179619,+,L1M5,LINE,L1,3784,4469,-1677,29175169,29181296 +6 + chr22 29179619 29179947 chr22,29179619,29179947,+,AluSc,SINE,Alu,2,296,-13,29179618,29179960 +6 + chr22 29179947 29180353 chr22,29179947,29180353,+,L1M5,LINE,L1,4470,4869,-1277,29175478,29181630 +6 + chr22 29180354 29180406 chr22,29180354,29180406,+,L1ME1,LINE,L1,5137,5181,-965,29175218,29181371 +6 + chr22 29180406 29180687 chr22,29180406,29180687,+,AluJb,SINE,Alu,1,299,-13,29180406,29180700 +6 + chr22 29180687 29181081 chr22,29180687,29181081,+,L1ME1,LINE,L1,5182,5582,-597,29175506,29181678 +6 + chr22 29181081 29181388 chr22,29181081,29181388,+,AluSx,SINE,Alu,1,307,-5,29181081,29181393 +6 + chr22 29181388 29181732 chr22,29181388,29181732,+,L1ME1,LINE,L1,5583,5935,-244,29175806,29181976 +6 + chr22 29181732 29182036 chr22,29181732,29182036,+,AluJr,SINE,Alu,1,298,-14,29181732,29182050 +6 + chr22 29182036 29182235 chr22,29182036,29182235,+,L1ME1,LINE,L1,5936,6143,-36,29176101,29182271 +6 + chr22 29182241 29182511 chr22,29182241,29182511,+,AluJb,SINE,Alu,1,274,-38,29182241,29182549 +6 + chr22 29182542 29182600 chr22,29182542,29182600,-,MIRb,SINE,MIR,-185,83,23,29182357,29182622 -6 - chr22 29182716 29183018 chr22,29182716,29183018,-,AluJr,SINE,Alu,-10,302,1,29182706,29183018 -6 - chr22 29183092 29183280 chr22,29183092,29183280,+,L2a,LINE,L2,2956,3138,-237,29180137,29183517 +6 + chr22 29183280 29183571 chr22,29183280,29183571,+,AluJr,SINE,Alu,16,304,-8,29183265,29183579 +6 + chr22 29183571 29183872 chr22,29183571,29183872,+,AluY,SINE,Alu,1,301,-10,29183571,29183882 +6 + chr22 29183872 29183936 chr22,29183872,29183936,+,L2a,LINE,L2,3139,3184,-191,29180734,29184127 +6 + chr22 29183936 29184239 chr22,29183936,29184239,-,AluJb,SINE,Alu,-8,304,1,29183928,29184239 -6 - chr22 29184239 29184419 chr22,29184239,29184419,+,L2a,LINE,L2,3185,3424,-2,29181055,29184421 +6 + chr22 29184964 29185173 chr22,29184964,29185173,-,MIR,SINE,MIR,-25,237,21,29184939,29185193 -6 - chr22 29185509 29185775 chr22,29185509,29185775,-,AluSz,SINE,Alu,-35,277,1,29185474,29185775 -6 - chr22 29186152 29186196 chr22,29186152,29186196,+,L1MB3,LINE,L1,5875,5908,-260,29180278,29186456 +6 + chr22 29186196 29186824 chr22,29186196,29186824,+,L1MB3,LINE,L1,5497,6141,-42,29180700,29186866 +6 + chr22 29186824 29187124 chr22,29186824,29187124,+,AluJo,SINE,Alu,2,297,-15,29186823,29187139 +6 + chr22 29187124 29187157 chr22,29187124,29187157,+,L1MB3,LINE,L1,6142,6180,-3,29180983,29187160 +6 + chr22 29187157 29187360 chr22,29187157,29187360,+,L1MB3,LINE,L1,5909,6147,-36,29181249,29187396 +6 + chr22 29187382 29187573 chr22,29187382,29187573,+,AluJb,SINE,Alu,85,299,-13,29187298,29187586 +6 + chr22 29187608 29187639 chr22,29187608,29187639,+,(A)n,Simple_repeat,Simple_repeat,1,31,0,29187608,29187639 +6 + chr22 29187675 29187833 chr22,29187675,29187833,-,MIRb,SINE,MIR,-66,202,40,29187609,29187872 -6 - chr22 29188203 29188626 chr22,29188203,29188626,-,MLT1C,LTR,ERVL-MaLR,-21,446,1,29188182,29188626 -6 - chr22 29188757 29188911 chr22,29188757,29188911,-,MIRb,SINE,MIR,-9,259,83,29188748,29188993 -6 - chr22 29189130 29189159 chr22,29189130,29189159,+,(CCTC)n,Simple_repeat,Simple_repeat,1,29,0,29189130,29189159 +6 + chr22 29189221 29189526 chr22,29189221,29189526,+,AluJr4,SINE,Alu,1,300,-12,29189221,29189538 +6 + chr22 29189565 29189607 chr22,29189565,29189607,+,(TGAAGAG)n,Simple_repeat,Simple_repeat,1,43,0,29189565,29189607 +6 + chr22 29189662 29189833 chr22,29189662,29189833,+,AluSx3,SINE,Alu,134,306,-5,29189529,29189838 +6 + chr22 29189846 29190175 chr22,29189846,29190175,-,L2b,LINE,L2,-73,3302,2968,29189773,29193142 -6 - chr22 29190383 29190477 chr22,29190383,29190477,+,MLT1C,LTR,ERVL-MaLR,6,107,-360,29190378,29190837 +6 + chr22 29190492 29190780 chr22,29190492,29190780,+,AluJr,SINE,Alu,3,291,-21,29190490,29190801 +6 + chr22 29190780 29190941 chr22,29190780,29190941,+,AluSq2,SINE,Alu,134,295,-18,29190647,29190959 +6 + chr22 29190946 29191329 chr22,29190946,29191329,-,L1MB7,LINE,L1,-159,6025,5632,29190787,29196960 -6 - chr22 29191364 29191655 chr22,29191364,29191655,-,AluSx,SINE,Alu,-18,294,1,29191346,29191655 -6 - chr22 29191743 29191808 chr22,29191743,29191808,-,U6,snRNA,snRNA,-43,64,1,29191700,29191808 -6 - chr22 29191952 29192256 chr22,29191952,29192256,+,AluJo,SINE,Alu,1,304,-8,29191952,29192264 +6 + chr22 29192277 29192576 chr22,29192277,29192576,+,AluSx,SINE,Alu,1,297,-15,29192277,29192591 +6 + chr22 29193034 29193067 chr22,29193034,29193067,+,(TTATA)n,Simple_repeat,Simple_repeat,1,34,0,29193034,29193067 +6 + chr22 29193282 29193590 chr22,29193282,29193590,+,AluY,SINE,Alu,1,303,-8,29193282,29193598 +6 + chr22 29193726 29194011 chr22,29193726,29194011,-,AluJr4,SINE,Alu,-8,304,5,29193718,29194015 -6 - chr22 29194227 29194319 chr22,29194227,29194319,-,MER117,DNA,hAT-Charlie,-1,196,103,29194226,29194421 -6 - chr22 29194413 29194440 chr22,29194413,29194440,+,G-rich,Low_complexity,Low_complexity,1,27,0,29194413,29194440 +6 + chr22 29194711 29195022 chr22,29194711,29195022,+,AluSx1,SINE,Alu,1,312,0,29194711,29195022 +6 + chr22 29195167 29195364 chr22,29195167,29195364,-,MIRb,SINE,MIR,-11,257,59,29195156,29195422 -6 - chr22 29195815 29195842 chr22,29195815,29195842,+,(TG)n,Simple_repeat,Simple_repeat,1,27,0,29195815,29195842 +6 + chr22 29196400 29196497 chr22,29196400,29196497,+,(CA)n,Simple_repeat,Simple_repeat,1,98,0,29196400,29196497 +6 + chr22 29196497 29196550 chr22,29196497,29196550,+,(ACAC)n,Simple_repeat,Simple_repeat,3,55,0,29196495,29196550 +6 + chr22 29196607 29196649 chr22,29196607,29196649,-,L1ME4b,LINE,L1,-44,848,809,29196563,29197457 -6 - chr22 29196649 29196910 chr22,29196649,29196910,+,AluSz,SINE,Alu,44,304,-8,29196606,29196918 +6 + chr22 29196910 29197134 chr22,29196910,29197134,-,L1ME4b,LINE,L1,-84,808,575,29196826,29197708 -6 - chr22 29197134 29197528 chr22,29197134,29197528,-,L1MB7,LINE,L1,-12,6172,5765,29197122,29203292 -6 - chr22 29197528 29197572 chr22,29197528,29197573,-,L1ME4b,LINE,L1,-318,574,529,29197210,29198101 -5 - chr22 29261024 29261079 chr22,29261024,29261127,-,MIRb,SINE,MIR,-140,128,5,29260884,29261131 -4 - chr22 29261844 29261952 chr22,29261652,29261952,-,AluSz,SINE,Alu,-10,302,1,29261642,29261952 -2 - chr22 29261953 29262037 chr22,29261953,29262139,-,L1M4,LINE,L1,-1226,4920,4744,29260727,29266882 -5 - chr22 29316826 29316856 chr22,29316826,29316856,+,A-rich,Low_complexity,Low_complexity,1,30,0,29316826,29316856 -6 + chr22 29437953 29438035 chr22,29437953,29438035,-,AluJb,SINE,Alu,0,302,224,29437953,29438258 +6 - chr22 29438035 29438173 chr22,29438035,29438173,-,AluJb,SINE,Alu,-174,138,1,29437861,29438173 +6 - chr22 29438179 29438482 chr22,29438179,29438482,-,AluSx,SINE,Alu,-9,303,1,29438170,29438482 +6 - chr22 29439296 29439351 chr22,29439296,29439351,-,MER5B,DNA,hAT-Charlie,-4,174,123,29439292,29439473 +6 - chr22 29439351 29439644 chr22,29439351,29439644,+,AluY,SINE,Alu,1,292,-19,29439351,29439663 -6 + chr22 29439644 29439659 chr22,29439644,29439659,-,MER5B,DNA,hAT-Charlie,-56,122,109,29439588,29439767 +6 - chr22 29439676 29439750 chr22,29439676,29439750,-,MER5A1,DNA,hAT-Charlie,-6,160,85,29439670,29439834 +6 - chr22 29439793 29439896 chr22,29439793,29439896,+,MER5A,DNA,hAT-Charlie,88,189,0,29439706,29439896 -6 + chr22 29440567 29440874 chr22,29440567,29440874,-,AluY,SINE,Alu,-8,303,1,29440559,29440874 +6 - chr22 29472191 29472333 chr22,29472191,29472333,+,MIR,SINE,MIR,2,166,-102,29472190,29472435 -6 + chr22 29472333 29472449 chr22,29472333,29472612,+,AluSc8,SINE,Alu,1,285,-26,29472333,29472638 -2 + chr22 29478131 29478171 chr22,29478131,29478171,+,(CTCCCT)n,Simple_repeat,Simple_repeat,1,40,0,29478131,29478171 -6 + chr22 29513951 29514016 chr22,29513951,29514244,-,AluSg4,SINE,Alu,-14,296,3,29513937,29514246 +2 - chr22 29535230 29535280 chr22,29534986,29535280,+,AluSx1,SINE,Alu,1,302,-10,29534986,29535290 -4 + chr22 29706131 29706167 chr22,29705965,29706167,+,MIRb,SINE,MIR,14,247,-21,29705952,29706188 -4 + chr22 29711880 29711995 chr22,29711880,29712177,+,AluJr,SINE,Alu,1,312,0,29711880,29712177 -2 + chr22 29719548 29719610 chr22,29719525,29719610,+,MIRb,SINE,MIR,50,141,-127,29719476,29719737 -4 + chr22 29979210 29979519 chr22,29979210,29979519,+,AluY,SINE,Alu,1,308,-3,29979210,29979522 -6 + chr22 29980756 29980788 chr22,29980756,29980788,+,(GAAA)n,Simple_repeat,Simple_repeat,1,32,0,29980756,29980788 -6 + chr22 29980790 29980833 chr22,29980790,29980833,+,L2c,LINE,L2,2820,2862,-557,29977971,29981390 -6 + chr22 29980995 29981246 chr22,29980995,29981246,+,L2c,LINE,L2,3082,3371,-4,29977914,29981250 -6 + chr22 29981551 29981844 chr22,29981551,29981844,+,AluSx1,SINE,Alu,1,308,-4,29981551,29981848 -6 + chr22 29981927 29982240 chr22,29981927,29982240,+,AluY,SINE,Alu,1,311,0,29981927,29982240 -6 + chr22 29982937 29982982 chr22,29982937,29982982,+,(TG)n,Simple_repeat,Simple_repeat,1,45,0,29982937,29982982 -6 + chr22 29983306 29983480 chr22,29983306,29983480,-,AluSx3,SINE,Alu,-3,308,135,29983303,29983614 +6 - chr22 29983649 29983932 chr22,29983649,29983932,-,AluJo,SINE,Alu,-24,288,5,29983625,29983936 +6 - chr22 29983934 29983997 chr22,29983934,29983997,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,61,0,29983934,29983997 -6 + chr22 29983997 29984118 chr22,29983997,29984118,-,AluJb,SINE,Alu,-191,121,1,29983806,29984118 +6 - chr22 29984888 29985000 chr22,29984888,29985000,+,MIRb,SINE,MIR,2,125,-143,29984887,29985143 -6 + chr22 29985217 29985524 chr22,29985217,29985524,+,AluSx1,SINE,Alu,1,307,-5,29985217,29985529 -6 + chr22 29986652 29987040 chr22,29986652,29987040,-,AluSp,SINE,Alu,-2,311,1,29986650,29987040 +6 - chr22 29988754 29989215 chr22,29988754,29989215,-,L1MC4,LINE,L1,0,8042,7613,29988754,29996827 +6 - chr22 29989215 29989526 chr22,29989215,29989526,-,AluSx3,SINE,Alu,-1,310,1,29989214,29989526 +6 - chr22 29989526 29989947 chr22,29989526,29989947,-,L1MC4,LINE,L1,-430,7612,7176,29989096,29997122 +6 - chr22 29989948 29990245 chr22,29989948,29990245,+,AluSz,SINE,Alu,1,294,-18,29989948,29990263 -6 + chr22 29990573 29990883 chr22,29990573,29990883,-,AluSz6,SINE,Alu,-5,307,1,29990568,29990883 +6 - chr22 29991973 29992044 chr22,29991973,29992044,-,L2c,LINE,L2,-231,3156,3084,29991742,29995127 +6 - chr22 29992078 29992366 chr22,29992078,29992366,-,AluSp,SINE,Alu,-11,302,1,29992067,29992366 +6 - chr22 29992847 29993036 chr22,29992847,29993036,-,MIRc,SINE,MIR,-26,242,48,29992821,29993083 +6 - chr22 29993044 29993114 chr22,29993044,29993114,-,L2a,LINE,L2,-55,3371,3264,29992989,29996377 +6 - chr22 29993333 29993414 chr22,29993333,29993414,-,L1ME2z,LINE,L1,-276,6168,6089,29993057,29999502 +6 - chr22 29993422 29993587 chr22,29993422,29993587,-,X7A_LINE,LINE,CR1,-107,160,4,29993315,29993590 +6 - chr22 29993881 29994094 chr22,29993881,29994094,+,MIRc,SINE,MIR,4,211,-57,29993878,29994151 -6 + chr22 29994381 29994411 chr22,29994381,29994411,+,(A)n,Simple_repeat,Simple_repeat,1,30,0,29994381,29994411 -6 + chr22 29995870 29995989 chr22,29995870,29995989,+,MER112,DNA,hAT-Charlie,3,157,-104,29995868,29996093 -6 + chr22 29996020 29996140 chr22,29996020,29996140,+,FLAM_A,SINE,Alu,1,122,-20,29996020,29996160 -6 + chr22 29996716 29997036 chr22,29996716,29997036,-,AluJb,SINE,Alu,-2,310,1,29996714,29997036 +6 - chr22 29997735 29997897 chr22,29997735,29997897,+,MER46C,DNA,TcMar-Tigger,33,203,-135,29997703,29998032 -6 + chr22 29998155 29998231 chr22,29998155,29998231,+,MIRb,SINE,MIR,124,200,-68,29998032,29998299 -6 + chr22 29998305 29998360 chr22,29998305,29998360,+,(TA)n,Simple_repeat,Simple_repeat,1,58,0,29998305,29998360 -6 + chr22 29998360 29998648 chr22,29998360,29998648,+,AluSz6,SINE,Alu,1,288,-24,29998360,29998672 -6 + chr22 29998648 29998684 chr22,29998648,29998684,+,(TA)n,Simple_repeat,Simple_repeat,1,37,0,29998648,29998684 -6 + chr22 29999293 29999646 chr22,29999293,29999646,-,Tigger4b,DNA,TcMar-Tigger,-3,358,1,29999290,29999646 +6 - chr22 29999733 30000000 chr22,29999733,30000000,+,AluSx,SINE,Alu,1,271,-41,29999733,30000041 -6 + chr22 30000179 30000488 chr22,30000179,30000488,+,AluY,SINE,Alu,1,309,-2,30000179,30000490 -6 + chr22 30001009 30001109 chr22,30001009,30001109,+,AluJr,SINE,Alu,39,135,-177,30000971,30001286 -6 + chr22 30001109 30001403 chr22,30001109,30001403,+,AluY,SINE,Alu,1,294,-17,30001109,30001420 -6 + chr22 30001403 30001550 chr22,30001403,30001550,+,AluJr,SINE,Alu,136,284,-28,30001268,30001578 -6 + chr22 30002805 30002875 chr22,30002805,30002875,+,(TC)n,Simple_repeat,Simple_repeat,1,74,0,30002805,30002875 -6 + chr22 30003023 30003071 chr22,30003023,30003071,+,(GCT)n,Simple_repeat,Simple_repeat,1,49,0,30003023,30003071 -6 + chr22 30003517 30003702 chr22,30003517,30003702,+,MIRb,SINE,MIR,2,196,-72,30003516,30003774 -6 + chr22 30005973 30006141 chr22,30005973,30006141,-,L1MB7,LINE,L1,-214,5970,5800,30005759,30011940 +6 - chr22 30006550 30006859 chr22,30006550,30006859,-,AluJr,SINE,Alu,-13,299,1,30006537,30006859 +6 - chr22 30010195 30010275 chr22,30010195,30010275,+,MIR3,SINE,MIR,64,147,-61,30010132,30010336 -6 + chr22 30010885 30010945 chr22,30010885,30010945,-,MIRb,SINE,MIR,-1,267,217,30010884,30011161 +6 - chr22 30010899 30011036 chr22,30010899,30011036,-,L2c,LINE,L2,-8,3379,3244,30010891,30014279 +6 - chr22 30011030 30011127 chr22,30011030,30011127,+,L2b,LINE,L2,3032,3121,-254,30007999,30011381 -6 + chr22 30011379 30011662 chr22,30011379,30011662,-,AluSz,SINE,Alu,-29,283,1,30011350,30011662 +6 - chr22 30011925 30011954 chr22,30011925,30011954,+,(TTTTC)n,Simple_repeat,Simple_repeat,1,29,0,30011925,30011954 -6 + chr22 30013807 30014047 chr22,30013807,30014047,+,L2a,LINE,L2,1513,1761,-1658,30012295,30015705 -6 + chr22 30014059 30014393 chr22,30014059,30014393,+,L2-3_Crp,LINE,L2,594,925,-1171,30013466,30015564 -6 + chr22 30014394 30014499 chr22,30014394,30014499,+,L2a,LINE,L2,2105,2212,-1207,30012290,30015706 -6 + chr22 30014499 30014792 chr22,30014499,30014792,-,AluJr,SINE,Alu,-3,309,15,30014496,30014806 +6 - chr22 30014792 30015055 chr22,30014792,30015055,+,L2a,LINE,L2,2213,2459,-960,30012580,30016015 -6 + chr22 30015055 30015359 chr22,30015055,30015359,-,AluJo,SINE,Alu,-21,291,1,30015034,30015359 +6 - chr22 30015359 30015488 chr22,30015359,30015488,+,L2a,LINE,L2,2460,2576,-843,30012900,30016331 -6 + chr22 30015488 30015528 chr22,30015488,30015528,+,(CCTC)n,Simple_repeat,Simple_repeat,1,40,0,30015488,30015528 -6 + chr22 30015528 30016174 chr22,30015528,30016174,+,L2a,LINE,L2,2577,3426,0,30012952,30016174 -6 + chr22 30018459 30018761 chr22,30018459,30018761,+,AluJb,SINE,Alu,1,307,-5,30018459,30018766 -5 + chr22 30018921 30019223 chr22,30018921,30019223,+,AluSx,SINE,Alu,1,303,-9,30018921,30019232 -6 + chr22 30023861 30023889 chr22,30023861,30023889,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,30023861,30023889 -6 + chr22 30024013 30024325 chr22,30024013,30024325,+,AluSq2,SINE,Alu,2,308,-5,30024012,30024330 -6 + chr22 30027814 30027839 chr22,30027814,30027839,+,(TAAA)n,Simple_repeat,Simple_repeat,1,25,0,30027814,30027839 -6 + chr22 30047625 30047678 chr22,30047398,30047678,+,LTR50,LTR,ERVL,3,308,-487,30047396,30048165 -5 + chr22 30047728 30047911 chr22,30047728,30048112,+,MLT1D,LTR,ERVL-MaLR,1,397,-108,30047728,30048220 -2 + chr22 30184658 30184753 chr22,30184658,30184753,+,L3b,LINE,CR1,5114,5208,-24,30179545,30184777 -6 + chr22 30239698 30239821 chr22,30239698,30239867,+,MIRc,SINE,MIR,7,196,-72,30239692,30239939 +4 + chr22 30239947 30240215 chr22,30239913,30240215,-,AluJb,SINE,Alu,-4,308,2,30239909,30240216 -2 - chr22 30246293 30246336 chr22,30246293,30246336,+,A-rich,Low_complexity,Low_complexity,1,46,0,30246293,30246336 +6 + chr22 30246389 30246443 chr22,30246389,30246443,+,(GGA)n,Simple_repeat,Simple_repeat,1,55,0,30246389,30246443 +6 + chr22 30275498 30275569 chr22,30275498,30275569,-,L2a,LINE,L2,-6,3420,3348,30275492,30278916 +6 - chr22 30276699 30276748 chr22,30276699,30276748,+,L1MB5,LINE,L1,5718,5775,-399,30270982,30277147 -6 + chr22 30276748 30276951 chr22,30276748,30277053,+,AluSq2,SINE,Alu,2,307,-6,30276747,30277059 -1 + chr22 30374324 30374390 chr22,30374267,30374390,-,MIRb,SINE,MIR,-112,156,13,30374155,30374402 +5 - chr22 30374541 30374619 chr22,30374541,30374619,+,MIR3,SINE,MIR,26,114,-116,30374516,30374735 -6 + chr22 30374681 30374793 chr22,30374681,30374793,-,MIR,SINE,MIR,-80,182,68,30374601,30374860 +6 - chr22 30374952 30375256 chr22,30374952,30375256,-,AluSc,SINE,Alu,-5,304,1,30374947,30375256 +6 - chr22 30375272 30375317 chr22,30375272,30375317,+,MIR3,SINE,MIR,161,206,-2,30375112,30375319 -6 + chr22 30375905 30376020 chr22,30375905,30376038,+,FLAM_C,SINE,Alu,1,133,-10,30375905,30376048 -2 + chr22 30377861 30377873 chr22,30377861,30378347,-,MLT1E3,LTR,ERVL-MaLR,-63,561,98,30377798,30378444 +1 - chr22 30421371 30421536 chr22,30421371,30421623,-,L1ME4b,LINE,L1,-217,675,419,30421154,30422041 +1 - chr22 30435544 30435609 chr22,30435515,30435609,-,MIRb,SINE,MIR,-79,189,96,30435436,30435704 -1 - chr22 30478630 30478996 chr22,30478510,30479321,+,LTR1E,LTR,ERV1,1,804,0,30478510,30479321 +3 + chr22 30483142 30483188 chr22,30483142,30483188,+,(ATG)n,Simple_repeat,Simple_repeat,1,46,0,30483142,30483188 +6 + chr22 30483420 30483570 chr22,30483420,30483570,+,LTR89,LTR,ERVL?,714,868,-11,30482707,30483581 +6 + chr22 30483675 30483735 chr22,30483675,30483735,+,MIR,SINE,MIR,36,95,-167,30483640,30483902 +6 + chr22 30492658 30492750 chr22,30492658,30492750,+,MIRc,SINE,MIR,67,157,-111,30492592,30492861 +6 + chr22 30598309 30598363 chr22,30596678,30598399,+,LTR12C,LTR,ERV1,3,1579,0,30596676,30598399 +1 + chr22 30601818 30601915 chr22,30601774,30602070,-,AluSg,SINE,Alu,-14,296,1,30601760,30602070 -3 - chr22 30926550 30926586 chr22,30926550,30926586,+,(A)n,Simple_repeat,Simple_repeat,1,36,0,30926550,30926586 +6 + chr22 30929877 30929995 chr22,30929860,30930156,-,AluSz,SINE,Alu,-21,291,1,30929839,30930156 -3 - chr22 30971755 30971779 chr22,30971755,30972092,+,L2c,LINE,L2,2974,3329,-58,30968782,30972150 +4 + chr22 30972048 30972092 chr22,30971755,30972092,+,L2c,LINE,L2,2974,3329,-58,30968782,30972150 +2 + chr22 30972667 30972706 chr22,30972667,30972706,+,(TTTTCTG)n,Simple_repeat,Simple_repeat,1,40,0,30972667,30972706 +6 + chr22 30975231 30975411 chr22,30975231,30975411,-,Charlie15a,DNA,hAT-Charlie,-41,183,1,30975190,30975411 -6 - chr22 30976063 30976081 chr22,30976063,30976081,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,30976063,30976081 +5 + chr22 30978431 30978603 chr22,30978431,30978603,+,MLT1K,LTR,ERVL-MaLR,6,192,-403,30978426,30979006 +6 + chr22 30978673 30978896 chr22,30978673,30978896,+,MLT1K,LTR,ERVL-MaLR,372,595,0,30978302,30978896 +1 + chr22 30978721 30978848 chr22,30978673,30978896,+,MLT1K,LTR,ERVL-MaLR,372,595,0,30978302,30978896 -1 + chr22 30979056 30979262 chr22,30979056,30979262,+,L1ME4a,LINE,L1,5741,5970,-154,30973316,30979416 +6 + chr22 31051630 31051824 chr22,31051540,31051824,+,AluSc,SINE,Alu,1,296,-13,31051540,31051837 +1 + chr22 31051824 31051989 chr22,31051824,31051989,+,AluSq2,SINE,Alu,137,300,-13,31051688,31052002 +6 + chr22 31052021 31052311 chr22,31052021,31052311,+,AluSz6,SINE,Alu,15,304,-8,31052007,31052319 +6 + chr22 31052311 31052490 chr22,31052311,31052490,+,AluJo,SINE,Alu,134,311,-1,31052178,31052491 +6 + chr22 31052493 31052802 chr22,31052493,31052802,+,AluSg,SINE,Alu,2,310,0,31052492,31052802 +6 + chr22 31052802 31052860 chr22,31052802,31052860,+,GA-rich,Low_complexity,Low_complexity,1,58,0,31052802,31052860 +6 + chr22 31052860 31052982 chr22,31052860,31052982,+,L1MEd,LINE,L1,1980,2106,-4980,31050881,31057962 +6 + chr22 31053009 31053374 chr22,31053009,31053374,-,MLT1F1,LTR,ERVL-MaLR,-153,416,3,31052856,31053376 -6 - chr22 31053379 31053681 chr22,31053379,31053681,+,AluJr,SINE,Alu,2,306,-6,31053378,31053687 +6 + chr22 31053798 31053868 chr22,31053798,31053868,-,MLT1J1,LTR,ERVL-MaLR,-538,72,1,31053260,31053868 -6 - chr22 31053912 31054015 chr22,31053912,31054015,-,MER53,DNA,hAT,-77,116,1,31053835,31054015 -6 - chr22 31054148 31054441 chr22,31054148,31054441,+,AluJb,SINE,Alu,1,293,-19,31054148,31054460 +6 + chr22 31054514 31054533 chr22,31054514,31054533,+,(CCA)n,Simple_repeat,Simple_repeat,1,19,0,31054514,31054533 +6 + chr22 31054551 31054851 chr22,31054551,31054851,-,AluSx1,SINE,Alu,-18,294,1,31054533,31054851 -6 - chr22 31054864 31055086 chr22,31054864,31055086,-,AluJb,SINE,Alu,-8,304,84,31054856,31055169 -6 - chr22 31055234 31055342 chr22,31055234,31055342,+,MIR3,SINE,MIR,78,188,-20,31055157,31055362 +6 + chr22 31055533 31055560 chr22,31055533,31055560,+,(AC)n,Simple_repeat,Simple_repeat,1,28,0,31055533,31055560 +6 + chr22 31055966 31056105 chr22,31055966,31056105,+,MIRb,SINE,MIR,17,160,-108,31055950,31056213 +6 + chr22 31056105 31056362 chr22,31056105,31056362,+,MER46C,DNA,TcMar-Tigger,1,286,-52,31056105,31056414 +6 + chr22 31056362 31056521 chr22,31056362,31056521,+,FRAM,SINE,Alu,1,159,-17,31056362,31056538 +6 + chr22 31056521 31056575 chr22,31056521,31056575,+,MER46C,DNA,TcMar-Tigger,284,338,0,31056238,31056575 +6 + chr22 31056618 31056733 chr22,31056618,31056733,+,L2a,LINE,L2,3296,3418,-8,31053323,31056741 +6 + chr22 31057339 31057469 chr22,31057339,31057469,+,MIRc,SINE,MIR,16,153,-115,31057324,31057584 +6 + chr22 31057533 31057828 chr22,31057533,31057828,+,AluSz,SINE,Alu,1,295,-17,31057533,31057845 +6 + chr22 31057908 31058098 chr22,31057908,31058098,-,MIRb,SINE,MIR,-14,254,66,31057894,31058163 -6 - chr22 31058225 31058337 chr22,31058225,31058337,+,MIRc,SINE,MIR,121,239,-29,31058105,31058366 +6 + chr22 31058480 31058620 chr22,31058480,31058620,+,MIR,SINE,MIR,39,193,-75,31058442,31058695 +6 + chr22 31058643 31058984 chr22,31058643,31058984,-,MLT1A0,LTR,ERVL-MaLR,0,365,8,31058643,31058991 -6 - chr22 31059005 31059316 chr22,31059005,31059316,-,AluSz,SINE,Alu,-1,311,1,31059004,31059316 -6 - chr22 31059426 31059463 chr22,31059426,31059463,+,(GATG)n,Simple_repeat,Simple_repeat,1,37,0,31059426,31059463 +6 + chr22 31059988 31060298 chr22,31059988,31060298,+,7SLRNA,srpRNA,srpRNA,1,312,-8,31059988,31060306 +6 + chr22 31060300 31060592 chr22,31060300,31060592,+,AluSz,SINE,Alu,1,292,-20,31060300,31060612 +6 + chr22 31060593 31060644 chr22,31060593,31060644,+,A-rich,Low_complexity,Low_complexity,1,52,0,31060593,31060644 +6 + chr22 31060649 31060736 chr22,31060649,31060736,+,MIRb,SINE,MIR,56,147,-121,31060594,31060857 +6 + chr22 31060756 31060866 chr22,31060756,31060866,-,MIR,SINE,MIR,0,262,142,31060756,31061007 -6 - chr22 31060889 31060960 chr22,31060889,31060960,+,L2c,LINE,L2,2999,3071,-316,31057891,31061276 +6 + chr22 31060962 31061256 chr22,31060962,31061256,-,AluSx,SINE,Alu,-16,296,1,31060946,31061256 -6 - chr22 31061397 31061613 chr22,31061397,31061613,+,AluSp,SINE,Alu,1,217,-96,31061397,31061709 +6 + chr22 31061613 31061753 chr22,31061613,31061753,+,AluSq,SINE,Alu,164,303,-10,31061450,31061763 +6 + chr22 31061848 31061873 chr22,31061848,31061873,+,(TATTTT)n,Simple_repeat,Simple_repeat,1,25,0,31061848,31061873 +6 + chr22 31061873 31062156 chr22,31061873,31062156,-,AluSz,SINE,Alu,-29,283,1,31061844,31062156 -6 - chr22 31062236 31062439 chr22,31062236,31062439,-,MIRb,SINE,MIR,-72,196,3,31062164,31062441 -6 - chr22 31062804 31063059 chr22,31062804,31063059,-,Charlie18a,DNA,hAT-Charlie,-19,323,31,31062785,31063089 -6 - chr22 31063315 31063393 chr22,31063315,31063393,+,(CT)n,Simple_repeat,Simple_repeat,1,83,0,31063315,31063393 +6 + chr22 31063460 31063577 chr22,31063460,31063577,+,FLAM_A,SINE,Alu,2,118,-24,31063459,31063601 +6 + chr22 31063597 31064008 chr22,31063597,31064008,-,MER57B2,LTR,ERV1,-13,390,4,31063584,31064011 -6 - chr22 31064060 31064112 chr22,31064060,31064112,-,MLT1O,LTR,ERVL-MaLR,-372,170,118,31063688,31064229 -6 - chr22 31064227 31064363 chr22,31064227,31064363,-,L2c,LINE,L2,-150,3237,3112,31064077,31067474 -6 - chr22 31064498 31064656 chr22,31064498,31064656,-,FRAM,SINE,Alu,-17,159,1,31064481,31064656 -6 - chr22 31064709 31065325 chr22,31064709,31065325,-,L1MC4a,LINE,L1,-2,7880,7243,31064707,31072567 -6 - chr22 31065351 31065649 chr22,31065351,31065649,-,AluSx1,SINE,Alu,-15,297,1,31065336,31065649 -6 - chr22 31065692 31065775 chr22,31065692,31065775,-,L2b,LINE,L2,-5,3370,3291,31065687,31069065 -6 - chr22 31065772 31065912 chr22,31065772,31065912,+,MIRc,SINE,MIR,83,228,-40,31065690,31065952 +6 + chr22 31066299 31066325 chr22,31066299,31066325,+,(TATTT)n,Simple_repeat,Simple_repeat,1,26,0,31066299,31066325 +6 + chr22 31066325 31066606 chr22,31066325,31066606,-,AluSz6,SINE,Alu,-29,283,1,31066296,31066606 -6 - chr22 31066736 31066770 chr22,31066736,31066770,+,(ATTTT)n,Simple_repeat,Simple_repeat,1,35,0,31066736,31066770 +6 + chr22 31066770 31067055 chr22,31066770,31067055,-,AluJb,SINE,Alu,-28,284,1,31066742,31067055 -6 - chr22 31067078 31067239 chr22,31067078,31067239,-,AluJo,SINE,Alu,-14,298,138,31067064,31067376 -6 - chr22 31067244 31067536 chr22,31067244,31067536,-,AluSc,SINE,Alu,-16,293,2,31067228,31067537 -6 - chr22 31067544 31067857 chr22,31067544,31067857,-,AluY,SINE,Alu,-1,310,1,31067543,31067857 -6 - chr22 31067886 31068017 chr22,31067886,31068017,+,AluJr4,SINE,Alu,1,134,-178,31067886,31068195 +6 + chr22 31068022 31068317 chr22,31068022,31068317,+,AluSq2,SINE,Alu,1,296,-17,31068022,31068334 +6 + chr22 31082179 31082226 chr22,31082179,31082226,-,L2b,LINE,L2,-2,3373,3327,31082177,31085552 +6 - chr22 31082761 31082802 chr22,31082761,31082802,+,(GTGG)n,Simple_repeat,Simple_repeat,1,42,0,31082761,31082802 -6 + chr22 31082905 31083026 chr22,31082905,31083026,-,MIRc,SINE,MIR,-142,126,7,31082763,31083032 +6 - chr22 31337668 31337748 chr22,31337589,31337748,+,Charlie15b,DNA,hAT-Charlie,36,204,-857,31337554,31338605 +2 + chr22 31337775 31338021 chr22,31337775,31338062,+,Charlie15b,DNA,hAT-Charlie,685,996,-65,31337091,31338127 +5 + chr22 31347731 31347869 chr22,31347731,31347869,+,MIRc,SINE,MIR,45,175,-93,31347687,31347962 +6 + chr22 31347928 31348025 chr22,31347928,31348025,+,MIR3,SINE,MIR,21,133,-135,31347908,31348160 +6 + chr22 31348099 31348234 chr22,31348099,31348234,+,AluSp,SINE,Alu,1,134,-179,31348099,31348413 +6 + chr22 31348234 31348537 chr22,31348234,31348537,+,AluSp,SINE,Alu,1,304,-9,31348234,31348546 +6 + chr22 31348537 31348713 chr22,31348537,31348713,+,AluSp,SINE,Alu,135,312,-1,31348403,31348714 +6 + chr22 31461664 31461728 chr22,31461439,31461728,-,AluSz,SINE,Alu,-13,299,5,31461426,31461732 -1 - chr22 31969986 31970096 chr22,31969871,31970096,-,MIRb,SINE,MIR,-14,254,11,31969857,31970106 -2 - chr22 31972576 31972604 chr22,31972528,31972604,+,MIR3,SINE,MIR,53,132,-76,31972476,31972680 +2 + chr22 31972632 31972732 chr22,31972632,31972918,+,AluJr,SINE,Alu,3,294,-18,31972630,31972936 +4 + chr22 31991593 31991658 chr22,31991462,31991658,-,L1ME4a,LINE,L1,0,6124,5936,31991462,31997593 -1 - chr22 31991678 31991716 chr22,31991678,31991716,+,MLT1C,LTR,ERVL-MaLR,366,399,-68,31991313,31991784 +6 + chr22 31991716 31992019 chr22,31991716,31992019,-,AluSg7,SINE,Alu,-5,304,1,31991711,31992019 -6 - chr22 31992019 31992092 chr22,31992019,31992092,+,MLT1C,LTR,ERVL-MaLR,400,467,0,31991620,31992092 +6 + chr22 31992106 31992165 chr22,31992106,31992165,+,MER5A,DNA,hAT-Charlie,3,62,-127,31992104,31992292 +6 + chr22 31992173 31992241 chr22,31992173,31992241,+,(TGTATA)n,Simple_repeat,Simple_repeat,1,68,0,31992173,31992241 +6 + chr22 31992384 31992616 chr22,31992384,31992616,-,MER58B,DNA,hAT-Charlie,0,341,101,31992384,31992716 -6 - chr22 31992616 31992852 chr22,31992616,31992852,-,L1PA4,LINE,L1,0,6155,5913,31992616,31998764 -6 - chr22 31992856 31992872 chr22,31992856,31992872,+,AluJo,SINE,Alu,120,135,-177,31992737,31993049 +6 + chr22 31992872 31993188 chr22,31992872,31993188,+,AluJb,SINE,Alu,1,310,-2,31992872,31993190 +6 + chr22 31993188 31993368 chr22,31993188,31993368,+,AluJo,SINE,Alu,136,311,-1,31993053,31993369 +6 + chr22 31993368 31993450 chr22,31993368,31993450,-,MER58B,DNA,hAT-Charlie,-256,85,4,31993112,31993453 -6 - chr22 31993464 31993667 chr22,31993464,31993667,+,MER3,DNA,hAT-Charlie,2,204,-5,31993463,31993672 +6 + chr22 31993668 31993929 chr22,31993668,31993929,-,MLT1C,LTR,ERVL-MaLR,-1,466,205,31993667,31994133 -6 - chr22 31993929 31993960 chr22,31993929,31993960,+,(TG)n,Simple_repeat,Simple_repeat,1,31,0,31993929,31993960 +6 + chr22 31993960 31994135 chr22,31993960,31994135,-,MLT1C,LTR,ERVL-MaLR,-263,204,7,31993697,31994141 -6 - chr22 31994158 31994324 chr22,31994158,31994324,-,MER5A,DNA,hAT-Charlie,0,189,1,31994158,31994324 -6 - chr22 31994336 31994753 chr22,31994336,31994753,-,MLT1B,LTR,ERVL-MaLR,0,390,1,31994336,31994753 -6 - chr22 31994879 31994974 chr22,31994879,31994974,+,MIR3,SINE,MIR,31,131,-77,31994849,31995051 +6 + chr22 31995077 31995136 chr22,31995077,31995136,+,MamSINE1,SINE,tRNA-RTE,36,96,-194,31995042,31995330 +6 + chr22 31995156 31995288 chr22,31995156,31995288,-,L2b,LINE,L2,0,3387,3219,31995156,31998506 -6 - chr22 31995288 31995423 chr22,31995288,31995423,-,FLAM_C,SINE,Alu,-8,135,1,31995280,31995423 -6 - chr22 31995423 31995462 chr22,31995423,31995462,-,L2b,LINE,L2,-144,3243,3220,31995279,31998681 -6 - chr22 31995462 31995766 chr22,31995462,31995766,-,AluJr,SINE,Alu,-6,306,3,31995456,31995768 -6 - chr22 31995767 31996080 chr22,31995767,31996080,+,MER57E1,LTR,ERV1,4,372,0,31995764,31996080 +6 + chr22 31996080 31996173 chr22,31996080,31996173,-,L2b,LINE,L2,-168,3219,3135,31995912,31999307 -6 - chr22 31996179 31996390 chr22,31996179,31996390,-,AluJr4,SINE,Alu,-18,294,85,31996161,31996474 -6 - chr22 31996455 31996863 chr22,31996455,31996863,-,L2b,LINE,L2,-338,3081,2629,31996117,31999491 -6 - chr22 31997044 31997191 chr22,31997044,31997191,+,L2b,LINE,L2,2938,3106,-281,31994107,31997472 +6 + chr22 31997191 31997359 chr22,31997191,31997359,-,AluSx1,SINE,Alu,-11,301,136,31997180,31997494 -6 - chr22 31997359 31997664 chr22,31997359,31997664,-,AluSg,SINE,Alu,-1,309,1,31997358,31997664 -6 - chr22 31997664 31997799 chr22,31997664,31997799,-,AluSx1,SINE,Alu,-177,135,1,31997487,31997799 -6 - chr22 31997799 31997818 chr22,31997799,31997818,+,L2b,LINE,L2,3107,3125,-262,31994693,31998080 +6 + chr22 31997824 31997921 chr22,31997824,31997921,+,L2b,LINE,L2,3322,3426,0,31994503,31997921 +6 + chr22 31997943 31997986 chr22,31997943,31997986,+,MIRb,SINE,MIR,13,56,-212,31997931,31998198 +6 + chr22 31997986 31998257 chr22,31997986,31998257,+,AluJr,SINE,Alu,1,273,-39,31997986,31998296 +6 + chr22 31998257 31998431 chr22,31998257,31998431,+,MIR,SINE,MIR,36,230,0,31998222,31998431 +6 + chr22 31998425 31998681 chr22,31998425,31998681,-,MIRb,SINE,MIR,-11,257,1,31998414,31998681 -6 - chr22 31999331 31999408 chr22,31999331,31999408,+,A-rich,Low_complexity,Low_complexity,1,77,0,31999331,31999408 +6 + chr22 31999485 31999789 chr22,31999485,31999789,+,AluSx,SINE,Alu,9,312,0,31999477,31999789 +6 + chr22 31999793 31999941 chr22,31999793,31999941,-,MIRb,SINE,MIR,-8,260,109,31999785,32000049 -6 - chr22 32000000 32000037 chr22,32000000,32000037,-,L1PA8,LINE,L1,-23,6149,6113,31999977,32006149 -6 - chr22 32000037 32000230 chr22,32000037,32000230,+,(TACATAGGTA)n,Simple_repeat,Simple_repeat,1,208,0,32000037,32000230 +6 + chr22 32000230 32000329 chr22,32000230,32000329,-,L1PA8,LINE,L1,-60,6112,5988,32000170,32006316 -6 - chr22 32000346 32000439 chr22,32000346,32000439,-,MIR,SINE,MIR,-160,102,12,32000186,32000450 -6 - chr22 32000460 32000926 chr22,32000460,32000926,-,MER31A,LTR,ERV1,0,485,21,32000460,32000946 -6 - chr22 32000926 32001225 chr22,32000926,32001225,+,AluSp,SINE,Alu,1,300,-13,32000926,32001238 +6 + chr22 32001225 32001252 chr22,32001225,32001252,-,MER31A,LTR,ERV1,-465,20,1,32000760,32001252 -6 - chr22 32001285 32001585 chr22,32001285,32001585,-,AluSz,SINE,Alu,-2,310,3,32001283,32001587 -6 - chr22 32001677 32001759 chr22,32001677,32001759,-,L1MB4,LINE,L1,-6,6174,6094,32001671,32007852 -6 - chr22 32001769 32001806 chr22,32001769,32001806,-,L1MA4,LINE,L1,-3,6297,6264,32001766,32008069 -6 - chr22 32001806 32002098 chr22,32001806,32002098,+,AluY,SINE,Alu,2,294,-17,32001805,32002115 +6 + chr22 32002098 32002198 chr22,32002098,32002198,-,L1MA4,LINE,L1,-37,6263,6191,32002061,32008388 -6 - chr22 32002198 32002358 chr22,32002198,32002358,-,AluJb,SINE,Alu,-18,294,137,32002180,32002494 -6 - chr22 32002362 32002614 chr22,32002362,32002614,-,AluYj4,SINE,Alu,-12,299,5,32002350,32002618 -6 - chr22 32002614 32002627 chr22,32002614,32002627,-,L1MA4,LINE,L1,-110,6190,6190,32002504,32008816 -6 - chr22 32002627 32002760 chr22,32002627,32002760,-,AluJo,SINE,Alu,-179,133,1,32002448,32002760 -6 - chr22 32002760 32003327 chr22,32002760,32003327,-,L1MA4,LINE,L1,-110,6190,5594,32002650,32008920 -6 - chr22 32003317 32004093 chr22,32003317,32004093,-,L1PA6,LINE,L1,-3,6151,5353,32003314,32009445 -6 - chr22 32004098 32004193 chr22,32004098,32004193,-,FLAM_A,SINE,Alu,-10,132,38,32004088,32004230 -6 - chr22 32004196 32004236 chr22,32004196,32004236,-,L1MA4,LINE,L1,-934,5366,5327,32003262,32009562 -6 - chr22 32004233 32004429 chr22,32004233,32004429,-,L1MB4,LINE,L1,-65,6115,5920,32004168,32010348 -6 - chr22 32004466 32004594 chr22,32004466,32004594,-,LTR45B,LTR,ERV1,-175,314,184,32004291,32004777 -6 - chr22 32004594 32004891 chr22,32004594,32004891,-,AluJr4,SINE,Alu,-7,305,1,32004587,32004891 -6 - chr22 32004891 32005058 chr22,32004891,32005058,-,LTR45B,LTR,ERV1,-306,183,18,32004585,32005075 -6 - chr22 32005059 32005081 chr22,32005059,32005081,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,32005059,32005081 +6 + chr22 32005081 32005115 chr22,32005081,32005115,-,LTR45B,LTR,ERV1,-453,36,3,32004628,32005117 -6 - chr22 32005290 32005464 chr22,32005290,32005464,+,MIR3,SINE,MIR,7,199,-9,32005284,32005473 +6 + chr22 32005549 32005595 chr22,32005549,32005595,-,MamTip2,DNA,hAT-Tip100,-174,131,84,32005375,32005678 -6 - chr22 32005853 32005970 chr22,32005853,32005970,+,MIR3,SINE,MIR,35,155,-53,32005819,32006023 +6 + chr22 32006159 32006214 chr22,32006159,32006214,-,MER102c,DNA,hAT-Charlie,-64,267,222,32006095,32006435 -6 - chr22 32006285 32006585 chr22,32006285,32006585,-,AluJr,SINE,Alu,-15,297,1,32006270,32006585 -6 - chr22 32006661 32006744 chr22,32006661,32006744,-,AluYh3,SINE,Alu,-228,83,1,32006433,32006744 -6 - chr22 32006746 32007172 chr22,32006746,32007172,+,L1M2,LINE,L1,4021,4469,-1674,32002726,32008846 +6 + chr22 32007170 32007330 chr22,32007170,32007330,+,L1MA8,LINE,L1,6137,6283,-8,32001034,32007338 +6 + chr22 32007348 32007380 chr22,32007348,32007380,+,L1MEf,LINE,L1,1823,1849,-4784,32005526,32012164 +6 + chr22 32007380 32007647 chr22,32007380,32007647,-,AluSz,SINE,Alu,-17,295,2,32007363,32007648 -6 - chr22 32007647 32007694 chr22,32007647,32007694,+,L1MEf,LINE,L1,1835,1873,-4760,32005813,32012454 +6 + chr22 32007695 32007820 chr22,32007695,32007820,-,AluJr,SINE,Alu,-187,125,3,32007508,32007822 -6 - chr22 32007820 32007921 chr22,32007820,32007921,+,L1MEf,LINE,L1,1874,1976,-4657,32005947,32012578 +6 + chr22 32007926 32008084 chr22,32007926,32008084,-,AluSx3,SINE,Alu,-78,233,93,32007848,32008176 -6 - chr22 32008104 32008139 chr22,32008104,32008139,+,Alu,SINE,Alu,254,288,-13,32007851,32008152 +6 + chr22 32008166 32008354 chr22,32008166,32008354,+,L1MEf,LINE,L1,2128,2343,-4290,32006039,32012644 +6 + chr22 32008367 32008674 chr22,32008367,32008674,+,AluSp,SINE,Alu,2,308,-5,32008366,32008679 +6 + chr22 32008675 32009063 chr22,32008675,32009063,+,L1MEf,LINE,L1,4929,5316,-1221,32003747,32010284 +6 + chr22 32009059 32009500 chr22,32009059,32009500,+,L1MC,LINE,L1,4266,4776,-1370,32004794,32010870 +6 + chr22 32009549 32009821 chr22,32009549,32009821,+,AluSz6,SINE,Alu,8,282,-30,32009542,32009851 +6 + chr22 32009901 32010006 chr22,32009901,32010006,+,L1ME3C,LINE,L1,5957,6058,-65,32003945,32010071 +6 + chr22 32010076 32010267 chr22,32010076,32010267,-,L2c,LINE,L2,-117,3270,3070,32009959,32013336 -6 - chr22 32010462 32010493 chr22,32010462,32010493,+,(ACATAT)n,Simple_repeat,Simple_repeat,1,33,0,32010462,32010493 +6 + chr22 32010853 32011106 chr22,32010853,32011106,+,AluJb,SINE,Alu,29,282,-30,32010825,32011136 +6 + chr22 32011106 32011137 chr22,32011106,32011137,+,(CAAC)n,Simple_repeat,Simple_repeat,1,31,0,32011106,32011137 +6 + chr22 32011155 32011463 chr22,32011155,32011463,+,AluSp,SINE,Alu,1,299,-14,32011155,32011477 +6 + chr22 32011466 32012062 chr22,32011466,32012062,-,L1M4c,LINE,L1,-3150,4409,3800,32008316,32015861 -6 - chr22 32012062 32012341 chr22,32012062,32012341,-,AluSx1,SINE,Alu,-21,291,12,32012041,32012352 -6 - chr22 32012341 32012799 chr22,32012341,32012799,-,L1M4c,LINE,L1,-3760,3799,3319,32008581,32016117 -6 - chr22 32012801 32013096 chr22,32012801,32013096,-,AluSx1,SINE,Alu,-17,295,1,32012784,32013096 -6 - chr22 32013103 32013415 chr22,32013103,32013415,-,L1M4c,LINE,L1,-4393,3172,2774,32008710,32016188 -6 - chr22 32013415 32013727 chr22,32013415,32013727,-,AluJr,SINE,Alu,-6,306,1,32013409,32013727 -6 - chr22 32013727 32014222 chr22,32013727,32014222,-,L1M4c,LINE,L1,-4794,2773,2249,32008933,32016470 -6 - chr22 32014222 32014412 chr22,32014222,32014412,-,AluJb,SINE,Alu,0,312,134,32014222,32014545 -6 - chr22 32014412 32014708 chr22,32014412,32014708,+,AluSp,SINE,Alu,1,292,-21,32014412,32014729 +6 + chr22 32014708 32014846 chr22,32014708,32014846,-,AluJb,SINE,Alu,-179,133,1,32014529,32014846 -6 - chr22 32014846 32014864 chr22,32014846,32014864,-,L1M4c,LINE,L1,-5240,2325,2306,32009606,32017169 -6 - chr22 32014848 32014943 chr22,32014848,32014943,+,L1ME4a,LINE,L1,5828,5921,-203,32009021,32015146 +6 + chr22 32015131 32015442 chr22,32015131,32015442,+,AluSx,SINE,Alu,1,312,0,32015131,32015442 +6 + chr22 32015627 32015695 chr22,32015627,32015695,+,MLT1E2,LTR,ERVL-MaLR,559,627,0,32015069,32015695 +6 + chr22 32016205 32016256 chr22,32016205,32016356,+,FRAM,SINE,Alu,21,161,-15,32016185,32016371 +5 + chr22 32160115 32160227 chr22,32160115,32160227,-,MIR,SINE,MIR,-119,143,35,32159996,32160261 +6 - chr22 32205115 32205247 chr22,32203086,32206587,-,REP522,Satellite,telo,-94,3546,1,32202992,32206587 -1 - chr22 32207136 32207276 chr22,32207126,32207285,-,REP522,Satellite,telo,-1082,735,561,32206044,32207845 -3 - chr22 32269357 32269371 chr22,32269290,32269371,-,MER5A1,DNA,hAT-Charlie,-5,161,76,32269285,32269446 -2 - chr22 32284683 32284796 chr22,32284305,32284796,-,MLT1G3,LTR,ERVL-MaLR,0,595,16,32284305,32284811 -1 - chr22 32284944 32285131 chr22,32284944,32285155,+,MER63D,DNA,hAT-Blackjack,802,1013,-48,32284143,32285203 +5 + chr22 32327171 32327276 chr22,32327122,32327276,+,L1M5,LINE,L1,5646,5800,-362,32321477,32327638 -5 + chr22 32348584 32348974 chr22,32348570,32348974,-,MER41-int,LTR,ERV1,-2385,4533,4115,32346185,32353088 -1 - chr22 32348974 32349272 chr22,32348974,32349272,-,AluSc8,SINE,Alu,-10,301,1,32348964,32349272 -6 - chr22 32349272 32349555 chr22,32349272,32349811,-,MER41-int,LTR,ERV1,-2718,3228,2791,32346554,32352601 -5 - chr22 32383256 32383432 chr22,32383111,32383432,+,MLT1A0,LTR,ERVL-MaLR,34,354,-11,32383078,32383443 +2 + chr22 32383439 32383490 chr22,32383439,32383490,-,MLT1F2,LTR,ERVL-MaLR,-411,149,96,32383028,32383585 -6 - chr22 32383589 32383692 chr22,32383589,32383692,-,MIR3,SINE,MIR,-17,191,84,32383572,32383775 -6 - chr22 32583877 32584204 chr22,32583645,32584266,+,LTR26E,LTR,ERV1,1,622,0,32583645,32584266 +5 + chr22 32837872 32838229 chr22,32837872,32838229,+,L2b,LINE,L2,2991,3426,0,32834882,32838229 +6 + chr22 32838800 32839113 chr22,32838800,32839113,-,L2b,LINE,L2,0,3375,3054,32838800,32842166 -6 - chr22 32841136 32841464 chr22,32841136,32841464,-,L2a,LINE,L2,-8,3418,3011,32841128,32844474 -6 - chr22 32841481 32841649 chr22,32841481,32841649,-,L2a,LINE,L2,-892,2527,2373,32840589,32844021 -6 - chr22 32841649 32841868 chr22,32841649,32841868,+,L1PA10,LINE,L1,5958,6168,0,32835692,32841868 +6 + chr22 32841868 32841954 chr22,32841868,32841954,-,L2a,LINE,L2,-1047,2372,2293,32840821,32844246 -6 - chr22 32841984 32842054 chr22,32841984,32842054,-,L2a,LINE,L2,-1384,2035,1964,32840600,32844017 -6 - chr22 32842076 32842215 chr22,32842076,32842215,-,MIRb,SINE,MIR,-92,176,9,32841984,32842223 -6 - chr22 32842595 32842654 chr22,32842595,32842654,-,MIRc,SINE,MIR,-18,250,193,32842577,32842846 -6 - chr22 32843126 32843265 chr22,32843126,32843265,+,MIRb,SINE,MIR,120,258,-10,32843007,32843275 +6 + chr22 32844698 32845028 chr22,32844698,32845028,-,AluJo,SINE,Alu,-1,311,1,32844697,32845028 -6 - chr22 32845204 32845489 chr22,32845204,32845489,-,AluSc,SINE,Alu,-19,290,1,32845185,32845489 -6 - chr22 32846061 32846089 chr22,32846061,32846089,+,(TTTAG)n,Simple_repeat,Simple_repeat,1,28,0,32846061,32846089 +6 + chr22 32846468 32846718 chr22,32846468,32846718,-,MIR,SINE,MIR,0,268,2,32846468,32846719 -6 - chr22 32846779 32846887 chr22,32846779,32846887,-,MIRc,SINE,MIR,-143,125,7,32846636,32846893 -6 - chr22 32847687 32847719 chr22,32847687,32847719,+,(TG)n,Simple_repeat,Simple_repeat,1,32,0,32847687,32847719 +6 + chr22 32847727 32847825 chr22,32847727,32847825,-,L2c,LINE,L2,-5,3382,3289,32847722,32851113 -6 - chr22 32847896 32848119 chr22,32847896,32848119,-,L3,LINE,CR1,-105,3994,3752,32847791,32851870 -6 - chr22 32848255 32848417 chr22,32848255,32848417,-,MIRb,SINE,MIR,-4,264,104,32848251,32848520 -6 - chr22 32848404 32848541 chr22,32848404,32848541,+,MIRb,SINE,MIR,100,260,-8,32848305,32848549 +6 + chr22 32848605 32848857 chr22,32848605,32848857,-,MIR,SINE,MIR,-1,261,9,32848604,32848865 -6 - chr22 32849770 32849943 chr22,32849770,32849943,+,MIR3,SINE,MIR,17,200,-8,32849754,32849951 +6 + chr22 32850178 32850374 chr22,32850178,32850374,+,MIR3,SINE,MIR,2,194,-14,32850177,32850388 +6 + chr22 32850699 32850769 chr22,32850699,32850769,+,L2b,LINE,L2,3293,3362,-13,32847407,32850782 +6 + chr22 32851586 32851731 chr22,32851586,32851731,-,MIR3,SINE,MIR,-95,173,21,32851491,32851751 -6 - chr22 32852041 32852252 chr22,32852041,32852252,-,MIRb,SINE,MIR,-8,260,35,32852033,32852286 -6 - chr22 32853358 32853427 chr22,32853358,32853427,+,L2b,LINE,L2,3352,3424,-2,32850007,32853429 +6 + chr22 32853754 32853964 chr22,32853754,32853964,-,MIR,SINE,MIR,-6,256,13,32853748,32853976 -6 - chr22 32853982 32854034 chr22,32853982,32854034,+,L3,LINE,CR1,4045,4096,-3,32849938,32854037 +6 + chr22 32855433 32855631 chr22,32855433,32855631,+,MIR,SINE,MIR,2,207,-55,32855432,32855686 +6 + chr22 32855633 32855831 chr22,32855633,32855831,-,MER20,DNA,hAT-Charlie,-3,216,1,32855630,32855831 -6 - chr22 32855843 32855893 chr22,32855843,32855893,-,MADE2,DNA,TcMar-Mariner,-29,51,1,32855814,32855893 -6 - chr22 32856523 32857200 chr22,32856523,32857200,-,L1MA4,LINE,L1,-2,6298,5614,32856521,32862813 -6 - chr22 32857740 32857927 chr22,32857740,32857927,+,MIRb,SINE,MIR,41,230,-38,32857700,32857965 +6 + chr22 32858655 32858819 chr22,32858655,32858819,-,MIRb,SINE,MIR,-66,202,27,32858589,32858845 -6 - chr22 32858892 32859049 chr22,32858892,32859049,+,MIRb,SINE,MIR,68,267,-1,32858825,32859050 +6 + chr22 32859731 32859792 chr22,32859731,32859792,+,(CCCTCTT)n,Simple_repeat,Simple_repeat,1,65,0,32859731,32859792 +6 + chr22 32860902 32860930 chr22,32860902,32860930,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,32860902,32860930 +6 + chr22 32863666 32863877 chr22,32863666,32863877,-,MIRb,SINE,MIR,-27,241,17,32863639,32863893 -6 - chr22 32865356 32865594 chr22,32865356,32865594,+,MIRc,SINE,MIR,2,266,-2,32865355,32865596 +6 + chr22 33105974 33106057 chr22,33105875,33106057,+,MIR3,SINE,MIR,10,193,-15,33105866,33106072 -4 + chr22 33109103 33109220 chr22,33109090,33109220,-,MIR,SINE,MIR,-118,144,15,33108972,33109234 -2 - chr22 33110409 33110513 chr22,33110271,33110513,+,MLT1L,LTR,ERVL-MaLR,119,378,-232,33110153,33110745 +2 + chr22 33320986 33321039 chr22,33320986,33321203,+,MIR,SINE,MIR,8,261,-1,33320979,33321204 +4 + chr22 33725014 33725101 chr22,33724720,33725164,-,L2a,LINE,L2,0,3426,2943,33724720,33728106 -1 - chr22 33724803 33724912 chr22,33724720,33725164,-,L2a,LINE,L2,0,3426,2943,33724720,33728106 +1 - chr22 33726116 33726161 chr22,33726058,33726161,-,MIR3,SINE,MIR,-53,215,84,33726005,33726244 -2 - chr22 33732256 33732377 chr22,33732076,33732377,-,LTR33,LTR,ERVL,-94,421,92,33731982,33732468 -2 - chr22 33732574 33732644 chr22,33732574,33732644,+,MIRb,SINE,MIR,189,258,-10,33732386,33732654 +6 + chr22 33732866 33733224 chr22,33732866,33733224,+,L2b,LINE,L2,3028,3375,0,33729839,33733224 +6 + chr22 33733627 33733662 chr22,33733627,33733662,+,(CCAT)n,Simple_repeat,Simple_repeat,1,35,0,33733627,33733662 +6 + chr22 33743135 33743198 chr22,33742875,33743280,+,MSTA,LTR,ERVL-MaLR,1,428,0,33742875,33743280 +3 + chr22 33744189 33744328 chr22,33744189,33744411,-,MIRb,SINE,MIR,-13,249,7,33744176,33744417 -5 - chr22 33746415 33746457 chr22,33746384,33746478,-,L2a,LINE,L2,-16,3410,3315,33746368,33749792 -3 - chr22 33747670 33747749 chr22,33747298,33747749,+,L2a,LINE,L2,2915,3385,-41,33744384,33747790 +2 + chr22 34171713 34171778 chr22,34171695,34171778,-,L2c,LINE,L2,0,3387,3300,34171695,34175077 -3 - chr22 34208231 34208317 chr22,34208231,34208317,+,L2c,LINE,L2,1518,1610,-1809,34206714,34210126 -6 + chr22 34208335 34208379 chr22,34208335,34208379,+,MIR,SINE,MIR,219,262,0,34208117,34208379 -6 + chr22 34478062 34478130 chr22,34478062,34478130,-,MER33,DNA,hAT-Charlie,0,324,248,34478062,34478377 -6 - chr22 34478130 34478505 chr22,34478130,34478505,+,THE1C,LTR,ERVL-MaLR,1,375,0,34478130,34478505 +6 + chr22 34478505 34478712 chr22,34478505,34478712,-,MER33,DNA,hAT-Charlie,-77,247,11,34478428,34478722 -6 - chr22 34479066 34479107 chr22,34479066,34479107,+,(CTTCCTC)n,Simple_repeat,Simple_repeat,1,45,0,34479066,34479107 +6 + chr22 34479511 34479542 chr22,34479511,34479542,+,(TGTG)n,Simple_repeat,Simple_repeat,1,31,0,34479511,34479542 +6 + chr22 34479684 34479746 chr22,34479684,34479746,+,MIRc,SINE,MIR,131,198,-70,34479554,34479816 +6 + chr22 34479793 34479833 chr22,34479793,34479833,+,(TATC)n,Simple_repeat,Simple_repeat,1,40,0,34479793,34479833 +6 + chr22 34480602 34480775 chr22,34480602,34480775,-,MIR3,SINE,MIR,-42,226,40,34480560,34480814 -6 - chr22 34480932 34481394 chr22,34480932,34481394,+,L1MB5,LINE,L1,5437,5914,-260,34475496,34481654 +6 + chr22 34481394 34481605 chr22,34481394,34481605,+,MSTB,LTR,ERVL-MaLR,1,192,-234,34481394,34481839 +6 + chr22 34481605 34481900 chr22,34481605,34481900,+,AluJb,SINE,Alu,3,306,-6,34481603,34481906 +6 + chr22 34481900 34482131 chr22,34481900,34482131,+,MSTB,LTR,ERVL-MaLR,193,426,0,34481708,34482131 +6 + chr22 34482131 34482383 chr22,34482131,34482383,+,L1MB5,LINE,L1,5915,6166,-8,34476217,34482391 +6 + chr22 34482844 34482965 chr22,34482844,34482965,+,L2b,LINE,L2,3245,3374,-1,34479600,34482966 +6 + chr22 34483080 34483156 chr22,34483080,34483156,+,(ATCC)n,Simple_repeat,Simple_repeat,1,76,0,34483080,34483156 +6 + chr22 34483171 34483308 chr22,34483171,34483308,-,L2c,LINE,L2,-8,3379,3256,34483163,34486563 -6 - chr22 34483718 34484327 chr22,34483718,34484327,+,MLT1E2,LTR,ERVL-MaLR,3,627,0,34483716,34484327 +6 + chr22 34484404 34484587 chr22,34484404,34484587,+,MIR,SINE,MIR,25,230,-32,34484380,34484619 +6 + chr22 34484677 34484776 chr22,34484677,34484776,+,LTR16,LTR,ERVL,1,101,-337,34484677,34485113 +6 + chr22 34484887 34484973 chr22,34484887,34484973,+,LTR16,LTR,ERVL,345,430,-8,34484543,34484981 +6 + chr22 34484991 34485031 chr22,34484991,34485031,+,(CTT)n,Simple_repeat,Simple_repeat,1,42,0,34484991,34485031 +6 + chr22 34485034 34485254 chr22,34485034,34485254,-,MIRb,SINE,MIR,-9,259,31,34485025,34485284 -6 - chr22 34485394 34485699 chr22,34485394,34485699,-,MSTA,LTR,ERVL-MaLR,-115,313,1,34485279,34485699 -6 - chr22 34485994 34486394 chr22,34485994,34486394,+,L1ME4a,LINE,L1,5675,6121,-3,34480320,34486397 +6 + chr22 34486757 34486799 chr22,34486757,34486799,-,L2a,LINE,L2,-40,3386,3345,34486717,34490143 -6 - chr22 34486857 34487007 chr22,34486857,34487007,-,L2c,LINE,L2,-172,3203,3055,34486685,34490061 -6 - chr22 34487763 34487785 chr22,34487763,34487785,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,34487763,34487785 +6 + chr22 34487795 34488030 chr22,34487795,34488030,+,MIR,SINE,MIR,6,262,0,34487790,34488030 +6 + chr22 34488167 34488310 chr22,34488167,34488310,+,(CTCC)n,Simple_repeat,Simple_repeat,1,146,0,34488167,34488310 +6 + chr22 34488310 34488481 chr22,34488310,34488481,-,L2a,LINE,L2,-9,3417,3226,34488301,34491706 -6 - chr22 34489006 34489282 chr22,34489006,34489282,+,MLT2D,LTR,ERVL,1,294,-120,34489006,34489402 +6 + chr22 34489302 34489417 chr22,34489302,34489417,+,L2b,LINE,L2,3066,3178,-197,34486237,34489614 +6 + chr22 34489705 34489937 chr22,34489705,34489937,+,MLT1B,LTR,ERVL-MaLR,1,232,-158,34489705,34490095 +6 + chr22 34489937 34490470 chr22,34489937,34490470,-,MLT2A2,LTR,ERVL,0,453,1,34489937,34490470 -6 - chr22 34490470 34490641 chr22,34490470,34490641,+,MLT1B,LTR,ERVL-MaLR,233,390,0,34490238,34490641 +6 + chr22 34490841 34490890 chr22,34490841,34490890,+,L2b,LINE,L2,3339,3387,0,34487503,34490890 +6 + chr22 34490913 34490957 chr22,34490913,34490957,-,L2a,LINE,L2,0,3426,3383,34490913,34494339 -6 - chr22 34491316 34491386 chr22,34491316,34491386,-,MIR3,SINE,MIR,-9,199,128,34491307,34491513 -6 - chr22 34491546 34491778 chr22,34491546,34491778,+,MIRc,SINE,MIR,22,268,0,34491525,34491778 +6 + chr22 34492087 34492806 chr22,34492087,34492806,-,L2a,LINE,L2,-1,3425,2654,34492086,34495459 -6 - chr22 34492807 34493002 chr22,34492807,34493002,-,MLT1I,LTR,ERVL-MaLR,0,411,216,34492807,34493217 -6 - chr22 34493134 34493456 chr22,34493134,34493456,-,L2a,LINE,L2,-762,2657,2309,34492372,34495764 -6 - chr22 34494172 34494265 chr22,34494172,34494265,-,L3,LINE,CR1,-156,3943,3847,34494016,34498111 -6 - chr22 34494927 34495212 chr22,34494927,34495212,-,L3,LINE,CR1,-60,4039,3751,34494867,34498962 -6 - chr22 34495616 34495855 chr22,34495616,34495855,+,MIRb,SINE,MIR,1,252,-16,34495616,34495871 +6 + chr22 34496059 34496114 chr22,34496059,34496114,+,MIR3,SINE,MIR,119,173,-35,34495941,34496149 +6 + chr22 34496196 34496430 chr22,34496196,34496430,-,MIRb,SINE,MIR,-6,262,9,34496190,34496438 -6 - chr22 34496751 34496888 chr22,34496751,34496888,+,L3,LINE,CR1,3945,4089,-10,34492807,34496898 +6 + chr22 34496915 34497065 chr22,34496915,34497065,-,MER45A,DNA,hAT-Tip100,0,178,18,34496915,34497082 -6 - chr22 34497065 34497464 chr22,34497065,34497464,+,MLT1A,LTR,ERVL-MaLR,1,374,0,34497065,34497464 +6 + chr22 34497669 34497956 chr22,34497669,34497956,+,L1MA8,LINE,L1,4465,4752,-1391,34493205,34499347 +6 + chr22 34497956 34498250 chr22,34497956,34498250,+,AluSx,SINE,Alu,1,294,-18,34497956,34498268 +6 + chr22 34498250 34499751 chr22,34498250,34499751,+,L1MA8,LINE,L1,4753,6286,-5,34493498,34499756 +6 + chr22 34499758 34500000 chr22,34499758,34500000,-,AluSx1,SINE,Alu,-14,298,56,34499744,34500055 -6 - chr22 34500002 34500079 chr22,34500002,34500079,-,FLAM_C,SINE,Alu,-80,53,1,34499922,34500079 -6 - chr22 34500086 34500111 chr22,34500086,34500111,+,(TG)n,Simple_repeat,Simple_repeat,1,25,0,34500086,34500111 +6 + chr22 34500111 34500734 chr22,34500111,34500734,+,(AT)n,Simple_repeat,Simple_repeat,2,623,0,34500110,34500734 +6 + chr22 34500763 34500850 chr22,34500763,34500850,+,MER102c,DNA,hAT-Charlie,143,229,-102,34500621,34500952 +6 + chr22 34501115 34501323 chr22,34501115,34501323,+,MIR,SINE,MIR,21,261,-1,34501095,34501324 +6 + chr22 34501345 34501435 chr22,34501345,34501435,+,L3b,LINE,CR1,5125,5226,-6,34496221,34501441 +6 + chr22 34501905 34502037 chr22,34501905,34502037,+,MIR3,SINE,MIR,3,147,-61,34501903,34502098 +6 + chr22 34502053 34502232 chr22,34502053,34502232,+,MER5A,DNA,hAT-Charlie,7,189,0,34502047,34502232 +6 + chr22 34502349 34502593 chr22,34502349,34502593,+,MIRb,SINE,MIR,3,265,-3,34502347,34502596 +6 + chr22 34503140 34503249 chr22,34503140,34503249,-,MLT1O,LTR,ERVL-MaLR,-335,207,100,34502805,34503348 -6 - chr22 34503665 34503690 chr22,34503665,34503690,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,34503665,34503690 +6 + chr22 34503821 34503925 chr22,34503821,34503925,+,MIR3,SINE,MIR,104,204,-4,34503718,34503929 +6 + chr22 34503979 34504142 chr22,34503979,34504142,-,LTR33,LTR,ERVL,-3,512,342,34503976,34504483 -6 - chr22 34504170 34504270 chr22,34504170,34504270,-,LTR33,LTR,ERVL,-307,224,129,34503863,34504398 -6 - chr22 34504271 34505233 chr22,34504271,34505233,+,MER66-int,LTR,ERV1,1770,2759,-3917,34502502,34509150 +6 + chr22 34505247 34505299 chr22,34505247,34505299,+,L1P5,LINE,L1,5678,5729,-422,34499570,34505721 +6 + chr22 34505300 34505372 chr22,34505300,34505372,+,MER66-int,LTR,ERV1,2766,2837,-3839,34502535,34509211 +6 + chr22 34505410 34505515 chr22,34505410,34505515,+,PRIMA41-int,LTR,ERV1,2641,2747,-5009,34502770,34510524 +6 + chr22 34505521 34506016 chr22,34505521,34506016,+,L1PB1,LINE,L1,5648,6143,-8,34499874,34506024 +6 + chr22 34506107 34506771 chr22,34506107,34508813,+,PRIMA41-int,LTR,ERV1,3104,5844,-1912,34503004,34510725 +5 + chr22 34642473 34642636 chr22,34642473,34642636,-,LTR67B,LTR,ERVL,-92,528,361,34642381,34642996 -6 - chr22 34642692 34642980 chr22,34642692,34642980,+,AluSc8,SINE,Alu,35,311,0,34642658,34642980 +6 + chr22 34642984 34643141 chr22,34642984,34643141,-,LTR67B,LTR,ERVL,-427,193,39,34642557,34643179 -6 - chr22 34643517 34643751 chr22,34643517,34643751,-,MIRb,SINE,MIR,-26,242,14,34643491,34643764 -6 - chr22 34644248 34644472 chr22,34644248,34644472,+,MIR,SINE,MIR,49,260,-2,34644200,34644474 +6 + chr22 34644472 34644768 chr22,34644472,34644768,-,AluSx,SINE,Alu,-16,296,1,34644456,34644768 -6 - chr22 34644830 34645170 chr22,34644830,34645170,-,L2c,LINE,L2,-1,3386,3021,34644829,34648190 -6 - chr22 34645970 34646062 chr22,34645970,34646062,-,MIR3,SINE,MIR,-10,198,104,34645960,34646165 -6 - chr22 34646291 34646550 chr22,34646291,34646550,+,MIRb,SINE,MIR,2,268,0,34646290,34646550 +6 + chr22 34647129 34647148 chr22,34647129,34647148,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,34647129,34647148 +6 + chr22 34647371 34647613 chr22,34647371,34647613,+,MIRb,SINE,MIR,22,268,0,34647350,34647613 +6 + chr22 34647620 34647934 chr22,34647620,34647934,-,MamGypLTR3a,LTR,Gypsy,-22,959,640,34647598,34648573 -6 - chr22 34648114 34648150 chr22,34648114,34648150,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,34648114,34648150 +6 + chr22 34648246 34648543 chr22,34648246,34648543,+,AluSq2,SINE,Alu,1,300,-13,34648246,34648556 +6 + chr22 34648621 34648659 chr22,34648621,34648659,-,MLT1A,LTR,ERVL-MaLR,0,365,328,34648621,34648986 -6 - chr22 34648656 34648840 chr22,34648656,34648840,-,MLT1A,LTR,ERVL-MaLR,-180,194,5,34648476,34648844 -6 - chr22 34648841 34648955 chr22,34648841,34648955,-,MIR,SINE,MIR,-84,178,60,34648757,34649014 -6 - chr22 34649216 34649281 chr22,34649216,34649281,-,MamGypLTR3a,LTR,Gypsy,-559,422,358,34648657,34649638 -6 - chr22 34649289 34649587 chr22,34649289,34649587,-,AluSq2,SINE,Alu,-15,298,2,34649274,34649588 -6 - chr22 34649831 34650068 chr22,34649831,34650068,+,MIR,SINE,MIR,11,261,-1,34649821,34650069 +6 + chr22 34650074 34650160 chr22,34650074,34650160,+,MIRb,SINE,MIR,63,149,-119,34650012,34650279 +6 + chr22 34650193 34650393 chr22,34650193,34650393,+,MIR3,SINE,MIR,41,256,-12,34650153,34650405 +6 + chr22 34650530 34650952 chr22,34650530,34650952,-,MSTA,LTR,ERVL-MaLR,0,428,1,34650530,34650952 -6 - chr22 34650955 34651103 chr22,34650955,34651103,-,MIRb,SINE,MIR,-8,260,107,34650947,34651209 -6 - chr22 34651165 34651287 chr22,34651165,34651287,-,MIRc,SINE,MIR,-97,171,46,34651068,34651332 -6 - chr22 34703375 34703423 chr22,34703375,34703652,-,Arthur1B,DNA,hAT-Tip100,-2,1223,882,34703373,34704533 +2 - chr22 34704071 34704363 chr22,34703919,34704713,-,Arthur1B,DNA,hAT-Tip100,-425,800,1,34703494,34704713 +3 - chr22 34711908 34712103 chr22,34711698,34712244,+,MLT2F,LTR,ERVL,1,657,-6,34711698,34712250 -5 + chr22 34712721 34712847 chr22,34712699,34712847,+,MIRc,SINE,MIR,87,243,-19,34712613,34712866 -4 + chr22 34724856 34724919 chr22,34724657,34725034,+,L1MA10,LINE,L1,32,361,-6669,34724626,34731703 -1 + chr22 35002801 35002830 chr22,35002770,35002830,-,L3,LINE,CR1,-1161,2938,2879,35001609,35005708 +4 - chr22 35051326 35051602 chr22,35050567,35051602,-,L4_A_Mam,LINE,RTE-X,-904,4086,3015,35049663,35054616 -1 - chr22 35051602 35051863 chr22,35051602,35051863,+,MER33,DNA,hAT-Charlie,36,286,-38,35051567,35051901 +6 + chr22 35051873 35052014 chr22,35051873,35052014,+,MLT1F,LTR,ERVL-MaLR,1,127,-421,35051873,35052435 +6 + chr22 35052014 35052235 chr22,35052014,35052235,+,MLT2B2,LTR,ERVL,2,218,-297,35052013,35052532 +6 + chr22 35052235 35052295 chr22,35052235,35052295,+,(TC)n,Simple_repeat,Simple_repeat,1,60,0,35052235,35052295 +6 + chr22 35052295 35052645 chr22,35052295,35052645,+,MLT2B2,LTR,ERVL,219,515,0,35052077,35052645 +6 + chr22 35052645 35053014 chr22,35052645,35053014,+,MLT1F,LTR,ERVL-MaLR,128,548,0,35052518,35053014 +6 + chr22 35053095 35053264 chr22,35053095,35053264,+,MER5B,DNA,hAT-Charlie,7,170,-8,35053089,35053272 +6 + chr22 35053264 35053285 chr22,35053264,35053285,-,MER5A,DNA,hAT-Charlie,-6,183,2,35053258,35053286 -6 - chr22 35053352 35053468 chr22,35053352,35053468,+,MER5A1,DNA,hAT-Charlie,43,163,-3,35053310,35053471 +6 + chr22 35053477 35053557 chr22,35053477,35053557,-,L4_A_Mam,LINE,RTE-X,-2186,2804,2724,35051291,35056280 -6 - chr22 35053584 35053652 chr22,35053584,35053652,-,MER5B,DNA,hAT-Charlie,-60,118,51,35053524,35053702 -6 - chr22 35053668 35053959 chr22,35053668,35053959,-,AluJb,SINE,Alu,-22,290,2,35053646,35053960 -6 - chr22 35054118 35054275 chr22,35054118,35054275,+,MamRep137,DNA,TcMar-Tigger,276,435,-75,35053843,35054350 +6 + chr22 35054607 35054844 chr22,35054607,35054844,-,L4_A_Mam,LINE,RTE-X,-2586,2404,2154,35052021,35056997 -6 - chr22 35054844 35055020 chr22,35054844,35055020,+,L2a,LINE,L2,3230,3420,-6,35051615,35055026 +6 + chr22 35055020 35055228 chr22,35055020,35055228,-,L4_A_Mam,LINE,RTE-X,-2838,2152,1921,35052182,35057148 -6 - chr22 35055931 35056179 chr22,35055931,35056179,+,MIRb,SINE,MIR,1,256,-12,35055931,35056191 +6 + chr22 35056323 35056352 chr22,35056323,35056352,+,(CCTT)n,Simple_repeat,Simple_repeat,1,30,0,35056323,35056352 +6 + chr22 35056492 35056775 chr22,35056492,35056775,+,MLT1L,LTR,ERVL-MaLR,5,289,-321,35056488,35057096 +6 + chr22 35056783 35057301 chr22,35056783,35057301,+,L1PA15,LINE,L1,4396,4914,-1232,35052388,35058533 +6 + chr22 35057301 35058958 chr22,35057301,35058958,-,MER52A,LTR,ERV1,0,1755,1,35057301,35058958 -6 - chr22 35058958 35060215 chr22,35058958,35060215,+,L1PA15,LINE,L1,4915,6163,-2,35054044,35060217 +6 + chr22 35060323 35060467 chr22,35060323,35060467,+,L1MA8,LINE,L1,5680,5829,-462,35054644,35060929 +6 + chr22 35060467 35060678 chr22,35060467,35060678,+,L1MA4,LINE,L1,6084,6294,-6,35054384,35060684 +6 + chr22 35060699 35061015 chr22,35060699,35061015,+,L1MA8,LINE,L1,5817,6124,-167,35054883,35061182 +6 + chr22 35061015 35061306 chr22,35061015,35061306,+,AluSp,SINE,Alu,1,292,-21,35061015,35061327 +6 + chr22 35061306 35061427 chr22,35061306,35061479,+,L1MA8,LINE,L1,6125,6289,-2,35055182,35061481 +5 + chr22 35119824 35119904 chr22,35119801,35119978,+,MIRc,SINE,MIR,17,219,-49,35119785,35120027 -5 + chr22 35120013 35120067 chr22,35120007,35120182,+,MIRb,SINE,MIR,80,259,-9,35119928,35120191 -3 + chr22 35122661 35122746 chr22,35122575,35122772,-,MIR,SINE,MIR,0,262,82,35122575,35122853 -1 - chr22 35127142 35127177 chr22,35127078,35127177,-,MIRb,SINE,MIR,-66,202,108,35127012,35127284 -2 - chr22 35127383 35127419 chr22,35127383,35127460,+,(TAAT)n,Simple_repeat,Simple_repeat,1,77,0,35127383,35127460 +5 + chr22 35160988 35161152 chr22,35160988,35161152,-,AluSz6,SINE,Alu,-15,297,134,35160973,35161285 -6 - chr22 35161152 35161453 chr22,35161152,35161453,-,AluSz,SINE,Alu,-12,300,1,35161140,35161453 -6 - chr22 35162880 35163141 chr22,35162880,35163141,+,L1ME4a,LINE,L1,5266,5528,-596,35157615,35163737 +6 + chr22 35163141 35163497 chr22,35163141,35163497,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,35163141,35163497 -6 - chr22 35163497 35163932 chr22,35163497,35163932,+,L1ME4a,LINE,L1,5529,5977,-147,35157969,35164079 +6 + chr22 35163932 35164222 chr22,35163932,35164222,+,AluSc8,SINE,Alu,3,297,-14,35163930,35164236 +6 + chr22 35164222 35164253 chr22,35164222,35164253,+,L1ME4a,LINE,L1,5978,6006,-118,35158245,35164371 +6 + chr22 35164463 35164591 chr22,35164463,35164591,-,L1PA8,LINE,L1,-5,6167,6064,35164458,35170654 -6 - chr22 35164591 35164894 chr22,35164591,35164894,-,AluY,SINE,Alu,-12,299,1,35164579,35164894 -6 - chr22 35164894 35165167 chr22,35164894,35165167,-,L1PA8,LINE,L1,-109,6063,5792,35164785,35170958 -6 - chr22 35165680 35170019 chr22,35165680,35170019,+,L1P1,LINE,L1,11,4359,-1787,35165670,35171806 +6 + chr22 35170020 35170247 chr22,35170020,35170247,+,AluSx,SINE,Alu,74,300,-12,35169947,35170259 +6 + chr22 35170358 35170409 chr22,35170358,35170409,+,(TA)n,Simple_repeat,Simple_repeat,1,51,0,35170358,35170409 +6 + chr22 35170620 35170707 chr22,35170620,35170707,-,L2c,LINE,L2,-256,3131,3047,35170364,35173753 -6 - chr22 35170707 35171186 chr22,35170707,35171186,+,MLT1D,LTR,ERVL-MaLR,1,505,0,35170707,35171186 +6 + chr22 35171186 35171205 chr22,35171186,35171205,-,L2c,LINE,L2,-341,3046,3030,35170845,35174234 -6 - chr22 35171435 35171530 chr22,35171403,35171530,+,MLT1J2,LTR,ERVL-MaLR,6,160,-284,35171398,35171814 -4 + chr22 35171403 35171530 chr22,35171403,35171530,+,MLT1J2,LTR,ERVL-MaLR,6,160,-284,35171398,35171814 +6 + chr22 35171599 35171728 chr22,35171599,35171728,+,MLT1J2,LTR,ERVL-MaLR,272,408,-40,35171328,35171768 +6 + chr22 35171761 35172053 chr22,35171761,35172053,+,AluSq,SINE,Alu,1,291,-22,35171761,35172075 +6 + chr22 35172590 35172685 chr22,35172590,35172685,-,MER5B,DNA,hAT-Charlie,-2,176,67,35172588,35172751 -6 - chr22 35172989 35173033 chr22,35172989,35173033,+,GA-rich,Low_complexity,Low_complexity,1,44,0,35172989,35173033 +6 + chr22 35173217 35173415 chr22,35173217,35173415,-,MER20,DNA,hAT-Charlie,-5,214,1,35173212,35173415 -6 - chr22 35173623 35173741 chr22,35173623,35173741,-,MIRb,SINE,MIR,-132,136,2,35173491,35173742 -6 - chr22 35175090 35175167 chr22,35175090,35175167,+,MIRc,SINE,MIR,74,150,-118,35175017,35175285 +6 + chr22 35175273 35175304 chr22,35175273,35175304,+,(CA)n,Simple_repeat,Simple_repeat,1,31,0,35175273,35175304 +6 + chr22 35175323 35175623 chr22,35175323,35175623,+,L2b,LINE,L2,3043,3353,-22,35172281,35175645 +6 + chr22 35175839 35176021 chr22,35175839,35176021,-,L2a,LINE,L2,-2,3424,3178,35175837,35179198 -6 - chr22 35176085 35176482 chr22,35176085,35176482,-,MSTB2,LTR,ERVL-MaLR,0,457,23,35176085,35176504 -6 - chr22 35176554 35176728 chr22,35176554,35176728,-,MER91A,DNA,hAT-Tip100,-10,186,7,35176544,35176734 -6 - chr22 35177224 35177372 chr22,35177224,35177372,-,L2a,LINE,L2,-1160,2259,2091,35176064,35179462 -6 - chr22 35177449 35177707 chr22,35177449,35177707,-,L2-1_Crp,LINE,L2,-1329,767,532,35176120,35178238 -6 - chr22 35177712 35177839 chr22,35177712,35177839,-,L2a,LINE,L2,-1716,1703,1572,35175996,35179410 -6 - chr22 35178866 35178876 chr22,35178866,35178876,+,(TCTC)n,Simple_repeat,Simple_repeat,1,72,0,35178866,35178876 +6 + chr22 35178876 35178936 chr22,35178876,35178936,+,(TCTCTT)n,Simple_repeat,Simple_repeat,1,61,0,35178876,35178936 +6 + chr22 35179145 35179447 chr22,35179145,35179447,+,AluY,SINE,Alu,1,302,-9,35179145,35179456 +6 + chr22 35179471 35179655 chr22,35179471,35179655,-,Tigger3a,DNA,TcMar-Tigger,0,348,169,35179471,35179823 -6 - chr22 35179655 35180061 chr22,35179655,35180061,-,MSTA,LTR,ERVL-MaLR,-3,425,1,35179652,35180061 -6 - chr22 35180061 35180225 chr22,35180061,35180225,-,Tigger3a,DNA,TcMar-Tigger,-180,168,1,35179881,35180225 -6 - chr22 35180280 35180508 chr22,35180280,35180508,-,MIR,SINE,MIR,0,262,24,35180280,35180531 -6 - chr22 35180509 35180616 chr22,35180509,35180616,-,MIRb,SINE,MIR,-137,131,23,35180372,35180638 -6 - chr22 35180928 35181144 chr22,35180928,35181144,-,L2c,LINE,L2,-6,3381,3131,35180922,35184274 -6 - chr22 35181404 35181450 chr22,35181404,35181450,+,(TTTTGT)n,Simple_repeat,Simple_repeat,1,46,0,35181404,35181450 +6 + chr22 35181778 35182334 chr22,35181778,35182334,+,L1PA7,LINE,L1,5595,6150,-4,35176184,35182338 +6 + chr22 35182338 35182386 chr22,35182338,35182386,+,(TAA)n,Simple_repeat,Simple_repeat,1,49,0,35182338,35182386 +6 + chr22 35182437 35182488 chr22,35182437,35182488,+,(ATTT)n,Simple_repeat,Simple_repeat,1,51,0,35182437,35182488 +6 + chr22 35182488 35182768 chr22,35182488,35182768,-,AluSg,SINE,Alu,-30,280,1,35182458,35182768 -6 - chr22 35182771 35183068 chr22,35182771,35183068,-,AluSx,SINE,Alu,-18,294,1,35182753,35183068 -6 - chr22 35183906 35184775 chr22,35183906,35184775,+,L1MEf,LINE,L1,1197,2040,-4160,35182710,35188935 +6 + chr22 35184779 35188467 chr22,35184779,35188467,+,L1PREC2,LINE,L1,1933,5278,-2863,35182847,35191330 +6 + chr22 35188473 35188565 chr22,35188473,35188565,+,(AT)n,Simple_repeat,Simple_repeat,1,96,0,35188473,35188565 +6 + chr22 35188588 35188787 chr22,35188588,35188787,+,L1PREC2,LINE,L1,3923,4117,-4981,35184666,35193768 +6 + chr22 35188787 35189089 chr22,35188787,35189089,+,AluSx,SINE,Alu,1,302,-10,35188787,35189099 +6 + chr22 35189089 35189165 chr22,35189089,35189165,+,L1PREC2,LINE,L1,4118,4181,-4917,35184972,35194082 +6 + chr22 35189165 35189494 chr22,35189165,35189494,+,AluSz6,SINE,Alu,1,312,0,35189165,35189494 +6 + chr22 35189494 35189703 chr22,35189494,35189703,+,L1PREC2,LINE,L1,4182,4493,-3648,35185313,35193351 +6 + chr22 35189752 35189965 chr22,35189752,35189965,-,MIRb,SINE,MIR,0,268,34,35189752,35189998 -6 - chr22 35190924 35191264 chr22,35190924,35191264,+,L2a,LINE,L2,2912,3251,-175,35188013,35191439 +6 + chr22 35191504 35191795 chr22,35191504,35191795,+,MER68,LTR,ERVL,6,315,-248,35191499,35192043 +6 + chr22 35191795 35192097 chr22,35191795,35192097,-,AluSx1,SINE,Alu,-12,300,1,35191783,35192097 -6 - chr22 35192097 35192354 chr22,35192097,35192354,+,MER68,LTR,ERVL,316,563,0,35191782,35192354 +6 + chr22 35192356 35192421 chr22,35192356,35192421,+,L2a,LINE,L2,3296,3361,-65,35189061,35192486 +6 + chr22 35192529 35192706 chr22,35192529,35192706,+,LTR16E2,LTR,ERVL,173,353,-215,35192357,35192921 +6 + chr22 35192784 35192849 chr22,35192784,35192849,+,LTR16E2,LTR,ERVL,488,554,-18,35192297,35192867 +6 + chr22 35193040 35193210 chr22,35193040,35193210,-,L4_A_Mam,LINE,RTE-X,-2,4988,4812,35193038,35198021 -6 - chr22 35193340 35193464 chr22,35193340,35193464,+,AluJr,SINE,Alu,1,125,-187,35193340,35193651 +6 + chr22 35193468 35193742 chr22,35193468,35193742,+,GA-rich,Low_complexity,Low_complexity,1,281,0,35193468,35193742 +6 + chr22 35193745 35193981 chr22,35193745,35193981,-,L4_A_Mam,LINE,RTE-X,-308,4682,4408,35193437,35198388 -6 - chr22 35194159 35194207 chr22,35194159,35194207,+,(AATAAT)n,Simple_repeat,Simple_repeat,1,48,0,35194159,35194207 +6 + chr22 35194377 35194401 chr22,35194377,35194401,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,35194377,35194401 +6 + chr22 35194443 35194619 chr22,35194443,35194619,-,AluYh3,SINE,Alu,-8,303,128,35194435,35194746 -6 - chr22 35195203 35195816 chr22,35195203,35195816,+,(AT)n,Simple_repeat,Simple_repeat,1,616,0,35195203,35195816 +6 + chr22 35195793 35195834 chr22,35195793,35195834,+,(ATACAC)n,Simple_repeat,Simple_repeat,1,41,0,35195793,35195834 +6 + chr22 35196032 35196141 chr22,35196032,35196141,+,Tigger14a,DNA,TcMar-Tigger,78,198,-126,35195955,35196267 +6 + chr22 35196162 35196473 chr22,35196162,35196473,+,AluYf1,SINE,Alu,1,304,-7,35196162,35196480 +6 + chr22 35197122 35197345 chr22,35197122,35197345,-,MIRb,SINE,MIR,-8,260,30,35197114,35197374 -6 - chr22 35197525 35197815 chr22,35197525,35197815,+,AluJo,SINE,Alu,1,297,-15,35197525,35197830 +6 + chr22 35198279 35198395 chr22,35198279,35198395,+,(CTC)n,Simple_repeat,Simple_repeat,1,117,0,35198279,35198395 +6 + chr22 35198930 35199079 chr22,35198930,35199079,-,MIRb,SINE,MIR,-83,185,33,35198847,35199111 -6 - chr22 35199097 35199257 chr22,35199097,35199257,+,MIR,SINE,MIR,34,193,-69,35199064,35199326 +6 + chr22 35199300 35199485 chr22,35199300,35199485,+,L2a,LINE,L2,3229,3400,-26,35196072,35199511 +6 + chr22 35199813 35200117 chr22,35199813,35200117,+,AluSz,SINE,Alu,1,299,-13,35199813,35200130 +6 + chr22 35200245 35200441 chr22,35200245,35200441,+,L2c,LINE,L2,2985,3184,-191,35197261,35200632 +6 + chr22 35200632 35200668 chr22,35200632,35200668,-,MADE2,DNA,TcMar-Mariner,0,80,46,35200632,35200713 -6 - chr22 35200668 35201043 chr22,35200668,35201043,+,THE1B,LTR,ERVL-MaLR,1,364,0,35200668,35201043 +6 + chr22 35201043 35201092 chr22,35201043,35201092,-,MADE2,DNA,TcMar-Mariner,-35,45,1,35201008,35201092 -6 - chr22 35201131 35201220 chr22,35201131,35201220,-,MIRc,SINE,MIR,-13,255,166,35201118,35201385 -6 - chr22 35201234 35201393 chr22,35201234,35201393,-,AluJo,SINE,Alu,-18,294,134,35201216,35201526 -6 - chr22 35201406 35201534 chr22,35201406,35201534,-,MIRc,SINE,MIR,-112,156,25,35201294,35201558 -6 - chr22 35201663 35202001 chr22,35201663,35202001,-,L2a,LINE,L2,-2,3424,3055,35201661,35205055 -6 - chr22 35202001 35202355 chr22,35202001,35202355,+,THE1B,LTR,ERVL-MaLR,1,364,0,35202001,35202355 +6 + chr22 35202355 35202465 chr22,35202355,35202465,-,L2a,LINE,L2,-372,3054,2940,35201983,35205404 -6 - chr22 35202691 35202968 chr22,35202691,35202968,+,L3,LINE,CR1,3728,4011,-88,35198964,35203056 +6 + chr22 35203145 35203183 chr22,35203145,35203183,+,L3,LINE,CR1,4059,4096,-3,35199087,35203186 +6 + chr22 35203362 35203425 chr22,35203362,35203425,+,MLT1K,LTR,ERVL-MaLR,143,202,-393,35203220,35203818 +6 + chr22 35203466 35203649 chr22,35203466,35203649,+,MLT1K,LTR,ERVL-MaLR,381,580,-15,35203086,35203664 +6 + chr22 35203799 35204149 chr22,35203799,35204149,+,L2a,LINE,L2,3060,3424,-2,35200740,35204151 +6 + chr22 35204391 35204699 chr22,35204391,35204699,-,AluY,SINE,Alu,0,311,1,35204391,35204699 -6 - chr22 35204699 35204886 chr22,35204699,35204886,-,MIR,SINE,MIR,-59,203,12,35204640,35204897 -6 - chr22 35205704 35206002 chr22,35205704,35206002,+,AluJo,SINE,Alu,1,304,-8,35205704,35206010 +6 + chr22 35206074 35206109 chr22,35206074,35206109,-,MLT1L,LTR,ERVL-MaLR,-2,608,575,35206072,35206683 -6 - chr22 35206185 35206402 chr22,35206185,35206402,-,MLT1L,LTR,ERVL-MaLR,-207,403,87,35205978,35206488 -6 - chr22 35206460 35206627 chr22,35206460,35206627,+,MIRc,SINE,MIR,6,202,-6,35206455,35206633 +6 + chr22 35206642 35206725 chr22,35206642,35206725,+,L2a,LINE,L2,3105,3190,-236,35203538,35206961 +6 + chr22 35206964 35207169 chr22,35206964,35207169,-,MIRb,SINE,MIR,-28,240,26,35206936,35207194 -6 - chr22 35207252 35207609 chr22,35207252,35207609,-,MLT1A0,LTR,ERVL-MaLR,0,365,5,35207252,35207613 -6 - chr22 35207613 35208834 chr22,35207613,35208834,-,MLT1A0-int,LTR,ERVL-MaLR,0,1735,403,35207613,35209236 -6 - chr22 35208834 35208876 chr22,35208834,35208876,-,THE1D,LTR,ERVL-MaLR,0,381,355,35208834,35209230 -6 - chr22 35208876 35209183 chr22,35208876,35209183,+,AluSc,SINE,Alu,1,308,-1,35208876,35209184 +6 + chr22 35209183 35209532 chr22,35209183,35209532,-,THE1D,LTR,ERVL-MaLR,-27,354,1,35209156,35209532 -6 - chr22 35209532 35209930 chr22,35209532,35209930,-,MLT1A0-int,LTR,ERVL-MaLR,-1333,402,3,35208199,35209932 -6 - chr22 35209932 35210293 chr22,35209932,35210293,-,MLT1A0,LTR,ERVL-MaLR,-1,364,1,35209931,35210293 -6 - chr22 35210295 35210451 chr22,35210295,35210451,-,MIRb,SINE,MIR,-105,163,11,35210190,35210461 -6 - chr22 35210982 35211280 chr22,35210982,35211280,+,L2,LINE,L2,13,309,-3110,35210970,35214390 +6 + chr22 35211295 35211503 chr22,35211295,35211503,+,L2a,LINE,L2,3196,3425,-1,35208100,35211504 +6 + chr22 35211605 35211967 chr22,35211605,35211967,-,MLT1L,LTR,ERVL-MaLR,-207,403,20,35211398,35211986 -6 - chr22 35212360 35212525 chr22,35212360,35212525,-,MIRc,SINE,MIR,-4,264,93,35212356,35212617 -6 - chr22 35212971 35213087 chr22,35212971,35213087,+,MER5A1,DNA,hAT-Charlie,2,131,-35,35212970,35213122 +6 + chr22 35213655 35213716 chr22,35213655,35213716,-,MLT1L,LTR,ERVL-MaLR,-3,607,548,35213652,35214263 -6 - chr22 35213716 35214096 chr22,35213716,35214096,+,THE1C,LTR,ERVL-MaLR,1,375,0,35213716,35214096 +6 + chr22 35214096 35214270 chr22,35214096,35214270,-,MLT1L,LTR,ERVL-MaLR,-63,547,344,35214033,35214613 -6 - chr22 35214297 35214371 chr22,35214297,35214371,-,MLT1L,LTR,ERVL-MaLR,-354,256,182,35213943,35214552 -6 - chr22 35214600 35214760 chr22,35214600,35214760,-,MER5B,DNA,hAT-Charlie,0,178,2,35214600,35214761 -6 - chr22 35214805 35214916 chr22,35214805,35214916,-,MER5A,DNA,hAT-Charlie,-76,113,1,35214729,35214916 -6 - chr22 35214925 35215025 chr22,35214925,35215052,-,MER5A1,DNA,hAT-Charlie,-1,165,40,35214924,35215091 -5 - chr22 35230998 35231056 chr22,35230880,35231246,-,THE1D,LTR,ERVL-MaLR,0,381,1,35230880,35231246 +1 - chr22 35298838 35298976 chr22,35298781,35298976,+,MamRTE1,LINE,RTE-BovB,2738,2922,-890,35296044,35299866 -5 + chr22 35298996 35299134 chr22,35298996,35299145,+,Charlie4z,DNA,hAT-Charlie,3,155,-12,35298994,35299157 -2 + chr22 35299490 35299541 chr22,35299490,35299616,+,MIR3,SINE,MIR,5,140,-68,35299486,35299684 -1 + chr22 35526932 35526977 chr22,35526833,35526977,-,MIR3,SINE,MIR,-43,165,15,35526790,35526991 -1 - chr22 35527206 35527239 chr22,35527206,35527239,+,GA-rich,Low_complexity,Low_complexity,1,33,0,35527206,35527239 +6 + chr22 35527398 35527415 chr22,35527398,35527578,-,MIRc,SINE,MIR,-43,225,29,35527355,35527606 -5 - chr22 35626988 35627112 chr22,35626812,35627112,-,AluSx,SINE,Alu,-18,294,1,35626794,35627112 +5 - chr22 35627112 35627141 chr22,35627112,35627141,-,L1ME2z,LINE,L1,-477,5967,5945,35626635,35633085 +6 - chr22 35634955 35635134 chr22,35634878,35635346,-,MLT2B1,LTR,ERVL,-3,517,1,35634875,35635346 +1 - chr22 35688848 35688972 chr22,35688585,35688972,+,MER31-int,LTR,ERV1,2938,3353,-1583,35685648,35690555 +2 + chr22 35688997 35689164 chr22,35688997,35689164,+,MER34B-int,LTR,ERV1,4738,4896,-460,35684260,35689624 +6 + chr22 35689346 35689373 chr22,35689346,35689514,+,MER57A-int,LTR,ERV1,5471,5621,-566,35683876,35690080 +5 + chr22 35993364 35993467 chr22,35993364,35993467,+,MLT1F1,LTR,ERVL-MaLR,1,112,-457,35993364,35993924 +6 + chr22 35993485 35993694 chr22,35993485,35993694,+,MLT1F1,LTR,ERVL-MaLR,355,567,-2,35993131,35993696 +6 + chr22 35993738 35994010 chr22,35993738,35994010,+,AluSx1,SINE,Alu,35,308,-4,35993704,35994014 +6 + chr22 35994102 35994361 chr22,35994102,35994361,-,Charlie5,DNA,hAT-Charlie,-9,2615,2386,35994093,35996746 -6 - chr22 35994372 35994704 chr22,35994372,35994704,-,AluJb,SINE,Alu,0,312,2,35994372,35994705 -6 - chr22 35994744 35994831 chr22,35994744,35994831,-,AluJr,SINE,Alu,-223,89,1,35994521,35994831 -6 - chr22 35995468 35995843 chr22,35995468,35995843,+,MSTA,LTR,ERVL-MaLR,1,428,0,35995468,35995843 +6 + chr22 35995884 35995906 chr22,35995884,35995906,+,(TCC)n,Simple_repeat,Simple_repeat,1,22,0,35995884,35995906 +6 + chr22 35996331 35996635 chr22,35996331,35996635,+,AluSz6,SINE,Alu,1,307,-5,35996331,35996640 +6 + chr22 35997709 35998013 chr22,35997709,35998013,+,AluJb,SINE,Alu,2,294,-18,35997708,35998031 +6 + chr22 35998084 35998119 chr22,35998084,35998119,+,(TCTCCT)n,Simple_repeat,Simple_repeat,1,36,0,35998084,35998119 +6 + chr22 35998383 35998676 chr22,35998383,35998676,-,AluSq2,SINE,Alu,-20,293,1,35998363,35998676 -6 - chr22 35999283 35999571 chr22,35999283,35999571,+,AluJr4,SINE,Alu,22,298,-14,35999262,35999585 +6 + chr22 35999633 35999729 chr22,35999633,35999729,+,L1M3,LINE,L1,4427,4531,-1609,35995207,36001338 +6 + chr22 35999983 36000000 chr22,35999983,36000000,+,(TA)n,Simple_repeat,Simple_repeat,1,17,0,35999983,36000000 +6 + chr22 36000005 36000300 chr22,36000005,36000300,-,AluSq,SINE,Alu,-18,295,1,35999987,36000300 -6 - chr22 36066533 36066717 chr22,36066520,36066717,-,MIR,SINE,MIR,-10,252,46,36066510,36066762 -1 - chr22 36066722 36067025 chr22,36066722,36067025,+,AluSx,SINE,Alu,1,312,0,36066722,36067025 +6 + chr22 36067176 36067240 chr22,36067176,36067240,+,MLT2C1,LTR,ERVL,8,71,-393,36067169,36067633 +6 + chr22 36067282 36067365 chr22,36067282,36067365,-,AluJb,SINE,Alu,-170,142,59,36067112,36067423 -6 - chr22 36067382 36067657 chr22,36067382,36067657,+,MLT2C1,LTR,ERVL,57,339,-58,36067326,36067715 +6 + chr22 36067892 36068003 chr22,36067892,36068003,+,MamGypLTR1c,LTR,Gypsy,636,749,-54,36067257,36068057 +6 + chr22 36068003 36068304 chr22,36068003,36068304,+,AluSx1,SINE,Alu,1,308,-4,36068003,36068308 +6 + chr22 36068304 36068350 chr22,36068304,36068350,+,MamGypLTR1c,LTR,Gypsy,750,796,-7,36067555,36068357 +6 + chr22 36068444 36068563 chr22,36068444,36068563,+,L1M4,LINE,L1,5221,5332,-814,36063224,36069377 +6 + chr22 36068563 36068867 chr22,36068563,36068867,+,AluSq2,SINE,Alu,1,304,-9,36068563,36068876 +6 + chr22 36068867 36069059 chr22,36068867,36069059,+,L1M4,LINE,L1,5333,5501,-679,36063535,36069738 +6 + chr22 36069060 36069269 chr22,36069060,36069269,-,MIR,SINE,MIR,-54,208,2,36069006,36069270 -6 - chr22 36069617 36069708 chr22,36069617,36069708,+,MLT1L,LTR,ERVL-MaLR,71,138,-306,36069547,36070014 +6 + chr22 36069721 36069757 chr22,36069721,36069757,+,G-rich,Low_complexity,Low_complexity,1,37,0,36069721,36069757 +6 + chr22 36069757 36070038 chr22,36069757,36070038,+,AluSx,SINE,Alu,2,285,-27,36069756,36070065 +6 + chr22 36070038 36070085 chr22,36070038,36070085,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,36070038,36070085 +6 + chr22 36070085 36070110 chr22,36070085,36070139,+,G-rich,Low_complexity,Low_complexity,38,91,0,36070048,36070139 +5 + chr22 36071000 36071085 chr22,36070839,36071085,+,MLT1L,LTR,ERVL-MaLR,345,598,-12,36070495,36071097 +1 + chr22 36071085 36071388 chr22,36071085,36071388,-,AluSz6,SINE,Alu,-6,306,1,36071079,36071388 -6 - chr22 36071396 36071681 chr22,36071396,36071681,-,AluJr,SINE,Alu,-16,296,1,36071380,36071681 -6 - chr22 36071810 36071897 chr22,36071810,36071897,+,MIRc,SINE,MIR,53,139,-129,36071758,36072026 +6 + chr22 36071942 36072238 chr22,36071942,36072238,-,AluSx,SINE,Alu,-15,297,1,36071927,36072238 -6 - chr22 36072339 36072359 chr22,36072339,36072359,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,36072339,36072359 +6 + chr22 36072362 36072665 chr22,36072362,36072665,+,AluJb,SINE,Alu,1,300,-12,36072362,36072677 +6 + chr22 36072701 36073009 chr22,36072701,36073009,+,AluSc8,SINE,Alu,1,306,-5,36072701,36073014 +6 + chr22 36073170 36073188 chr22,36073170,36073188,+,L1MB5,LINE,L1,5309,5328,-914,36067862,36074102 +6 + chr22 36073188 36073501 chr22,36073188,36073501,+,AluSz,SINE,Alu,1,312,0,36073188,36073501 +6 + chr22 36073501 36073746 chr22,36073501,36073746,+,L1MB5,LINE,L1,5329,5579,-663,36068173,36074409 +6 + chr22 36073756 36073867 chr22,36073756,36073867,+,AluJb,SINE,Alu,1,125,-187,36073756,36074054 +6 + chr22 36073878 36074174 chr22,36073878,36074174,+,(TA)n,Simple_repeat,Simple_repeat,1,297,0,36073878,36074174 +6 + chr22 36074174 36074334 chr22,36074174,36074334,+,AluJb,SINE,Alu,133,292,-20,36074042,36074354 +6 + chr22 36074346 36074361 chr22,36074346,36074361,+,L1ME3B,LINE,L1,5808,5820,-422,36068539,36074783 +6 + chr22 36074361 36074660 chr22,36074361,36074660,+,AluSq2,SINE,Alu,1,298,-15,36074361,36074675 +6 + chr22 36074660 36074982 chr22,36074660,36074982,+,L1MB5,LINE,L1,5819,6142,-32,36068842,36075014 +6 + chr22 36075056 36075322 chr22,36075056,36075322,-,AluSz,SINE,Alu,-42,270,5,36075014,36075326 -6 - chr22 36075325 36075384 chr22,36075325,36075384,+,L1MB5,LINE,L1,6112,6174,0,36069214,36075384 +6 + chr22 36075654 36075732 chr22,36075654,36075732,-,MLT1N2,LTR,ERVL-MaLR,-3,559,472,36075651,36076203 -6 - chr22 36075732 36076004 chr22,36075732,36076004,-,AluJo,SINE,Alu,-15,297,2,36075717,36076005 -6 - chr22 36076004 36076397 chr22,36076004,36076397,-,MLT1N2,LTR,ERVL-MaLR,-91,471,48,36075913,36076444 -6 - chr22 36076414 36076770 chr22,36076414,36076770,+,THE1B,LTR,ERVL-MaLR,1,326,-38,36076414,36076808 +6 + chr22 36076770 36077043 chr22,36076770,36077043,-,AluSz,SINE,Alu,-1,311,39,36076769,36077081 -6 - chr22 36077043 36077085 chr22,36077043,36077085,+,THE1B,LTR,ERVL-MaLR,327,364,0,36076717,36077085 +6 + chr22 36077322 36077501 chr22,36077322,36077501,+,MLT1K,LTR,ERVL-MaLR,149,327,-268,36077174,36077769 +6 + chr22 36077521 36077704 chr22,36077521,36077704,+,MLT1K,LTR,ERVL-MaLR,383,576,-19,36077139,36077723 +6 + chr22 36077806 36078114 chr22,36077806,36078114,+,AluSx3,SINE,Alu,1,307,-4,36077806,36078118 +6 + chr22 36078147 36078453 chr22,36078147,36078453,+,AluSz,SINE,Alu,1,310,-2,36078147,36078455 +6 + chr22 36078456 36078589 chr22,36078456,36078589,-,MIRc,SINE,MIR,-109,159,19,36078347,36078607 -6 - chr22 36078656 36078804 chr22,36078656,36078804,-,MamTip2,DNA,hAT-Tip100,-17,288,110,36078639,36078913 -6 - chr22 36079304 36079421 chr22,36079304,36079421,-,MIRb,SINE,MIR,-46,222,100,36079258,36079520 -6 - chr22 36079545 36079841 chr22,36079545,36079841,-,AluSc,SINE,Alu,-4,305,1,36079541,36079841 -6 - chr22 36079854 36080631 chr22,36079854,36080631,-,L1PA10,LINE,L1,-4,6164,5391,36079850,36086021 -6 - chr22 36080631 36080946 chr22,36080631,36080946,-,AluSq2,SINE,Alu,0,313,1,36080631,36080946 -6 - chr22 36080946 36080979 chr22,36080946,36080979,-,L1PA10,LINE,L1,-778,5390,5362,36080168,36086340 -6 - chr22 36080980 36081181 chr22,36080980,36081181,-,MIRb,SINE,MIR,-40,228,19,36080940,36081199 -6 - chr22 36081446 36081757 chr22,36081446,36081757,-,AluSz,SINE,Alu,-2,310,1,36081444,36081757 -6 - chr22 36081898 36081945 chr22,36081898,36081945,+,MIR3,SINE,MIR,124,170,-38,36081775,36081983 +6 + chr22 36082077 36082368 chr22,36082077,36082368,-,AluSx1,SINE,Alu,-15,297,5,36082062,36082372 -6 - chr22 36082378 36082683 chr22,36082378,36082683,-,AluSp,SINE,Alu,-7,306,1,36082371,36082683 -6 - chr22 36082684 36082762 chr22,36082684,36082762,-,L1ME2z,LINE,L1,-24,6420,6348,36082660,36089109 -6 - chr22 36082918 36083224 chr22,36082918,36083224,-,AluSx,SINE,Alu,-7,305,1,36082911,36083224 -6 - chr22 36083536 36083649 chr22,36083536,36083649,-,MIR,SINE,MIR,-3,259,148,36083533,36083796 -6 - chr22 36083649 36083954 chr22,36083649,36083954,+,AluSp,SINE,Alu,1,306,-7,36083649,36083961 +6 + chr22 36083954 36084085 chr22,36083954,36084085,-,MIR,SINE,MIR,-115,147,11,36083839,36084095 -6 - chr22 36084140 36084446 chr22,36084140,36084446,-,AluSq,SINE,Alu,-21,292,1,36084119,36084446 -6 - chr22 36084498 36084720 chr22,36084498,36084720,+,AluJb,SINE,Alu,1,220,-92,36084498,36084812 +6 + chr22 36084736 36084831 chr22,36084736,36084831,-,MIR,SINE,MIR,-69,199,106,36084667,36084936 -6 - chr22 36084827 36084874 chr22,36084827,36084874,-,MIR3,SINE,MIR,-73,135,87,36084754,36084960 -6 - chr22 36085316 36085573 chr22,36085316,36085631,-,AluSc5,SINE,Alu,0,309,1,36085316,36085631 -5 - chr22 36091148 36091310 chr22,36090354,36091310,+,L1PA3,LINE,L1,5196,6151,-4,36085159,36091314 +1 + chr22 36091330 36091351 chr22,36091330,36091351,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,36091330,36091351 +6 + chr22 36091351 36091446 chr22,36091351,36091446,-,MER74B,LTR,ERVL,-465,157,64,36090886,36091509 -6 - chr22 36091446 36091756 chr22,36091446,36091756,+,AluSx1,SINE,Alu,1,312,0,36091446,36091756 +6 + chr22 36091769 36092134 chr22,36091769,36092134,-,MLT1F2,LTR,ERVL-MaLR,-21,539,154,36091748,36092287 -6 - chr22 36092137 36092437 chr22,36092137,36092437,-,AluSx1,SINE,Alu,-11,301,1,36092126,36092437 -6 - chr22 36092446 36092841 chr22,36092446,36092841,-,L1MB3,LINE,L1,0,6183,5824,36092446,36098664 -6 - chr22 36092841 36093135 chr22,36092841,36093135,-,AluJr,SINE,Alu,-6,306,51,36092835,36093185 -6 - chr22 36093135 36093352 chr22,36093135,36093432,-,AluYc3,SINE,Alu,-8,292,1,36093127,36093432 -5 - chr22 36138627 36138928 chr22,36138627,36138928,+,LTR16E2,LTR,ERVL,238,563,-5,36138390,36138933 -6 + chr22 36138952 36139195 chr22,36138952,36139195,-,L2,LINE,L2,-528,2891,2642,36138424,36141836 +6 - chr22 36388626 36388735 chr22,36388622,36388760,+,L2c,LINE,L2,3011,3138,-237,36385612,36388997 +1 + chr22 36396118 36396199 chr22,36396105,36396199,-,L2b,LINE,L2,-5,3370,3272,36396100,36399470 -2 - chr22 36445395 36445521 chr22,36445351,36445521,+,MER117,DNA,hAT-Charlie,1,161,-36,36445351,36445557 -5 + chr22 36552165 36552275 chr22,36552073,36552275,-,MIRb,SINE,MIR,-27,241,27,36552046,36552301 -1 - chr22 36552452 36552555 chr22,36552452,36552555,+,L4_C_Mam,LINE,RTE-X,4818,4924,-214,36547635,36552769 +6 + chr22 36562197 36562220 chr22,36562197,36562220,+,(GT)n,Simple_repeat,Simple_repeat,1,23,0,36562197,36562220 -6 + chr22 36562301 36562399 chr22,36562301,36562399,-,MIR3,SINE,MIR,-2,206,109,36562299,36562507 +6 - chr22 36562465 36562535 chr22,36562465,36562535,+,(GT)n,Simple_repeat,Simple_repeat,1,71,0,36562465,36562535 -6 + chr22 36562708 36562753 chr22,36562708,36562753,+,(TG)n,Simple_repeat,Simple_repeat,1,46,0,36562708,36562753 -6 + chr22 36721281 36721407 chr22,36721281,36721407,+,MIR,SINE,MIR,33,159,-103,36721249,36721510 +6 + chr22 36721412 36721472 chr22,36721412,36721564,-,MLT1H,LTR,ERVL-MaLR,-1,548,411,36721411,36721974 -5 - chr22 36818727 36818779 chr22,36818727,36818840,-,MIR1_Amn,SINE,MIR,-87,143,27,36818640,36818866 -4 - chr22 36847884 36848017 chr22,36847884,36848017,+,MIRc,SINE,MIR,3,152,-116,36847882,36848133 -2 + chr22 36965248 36965513 chr22,36964886,36965641,+,L2,LINE,L2,1651,2478,-941,36963236,36966582 +1 + chr22 36966390 36966507 chr22,36966373,36966581,-,AluSz6,SINE,Alu,-21,291,84,36966352,36966664 -3 - chr22 36967168 36967250 chr22,36967017,36967250,-,LTR84b,LTR,ERVL,-5,756,522,36967012,36967771 -2 - chr22 36967428 36967588 chr22,36967428,36967745,-,AluSz,SINE,Alu,-13,299,1,36967415,36967745 -4 - chr22 36967986 36968118 chr22,36967952,36968118,-,AluSx,SINE,Alu,0,312,156,36967952,36968273 -2 - chr22 36968130 36968154 chr22,36968130,36968154,+,(TAA)n,Simple_repeat,Simple_repeat,1,24,0,36968130,36968154 +6 + chr22 37166912 37166964 chr22,37166912,37167056,-,MIR3,SINE,MIR,-22,186,33,37166890,37167088 -4 - chr22 37339583 37339821 chr22,37339523,37339821,+,L1MB4,LINE,L1,5865,6180,0,37333659,37339821 -5 + chr22 37340807 37340973 chr22,37340807,37340973,-,MIRc,SINE,MIR,-79,189,30,37340728,37341002 +6 - chr22 37340973 37341015 chr22,37340973,37341094,+,GA-rich,Low_complexity,Low_complexity,1,122,0,37340973,37341094 -2 + chr22 37352348 37352440 chr22,37352348,37353010,-,L2a,LINE,L2,-18,3408,2671,37352330,37355680 +2 - chr22 37353490 37354398 chr22,37353490,37354398,+,L1ME3A,LINE,L1,5187,6167,-6,37348304,37354404 -6 + chr22 37354578 37354608 chr22,37354578,37354608,-,MER20,DNA,hAT-Charlie,-160,59,30,37354418,37354637 +6 - chr22 37354700 37354839 chr22,37354700,37354906,-,MER20,DNA,hAT-Charlie,0,219,19,37354700,37354924 +1 - chr22 37372467 37372614 chr22,37372467,37372614,+,MIR1_Amn,SINE,MIR,29,199,-31,37372439,37372645 +6 + chr22 37384918 37384971 chr22,37384918,37384971,-,L2c,LINE,L2,0,3387,3335,37384918,37388305 +6 - chr22 37384981 37385017 chr22,37384981,37385017,+,(CCT)n,Simple_repeat,Simple_repeat,1,36,0,37384981,37385017 -6 + chr22 37385192 37385283 chr22,37385192,37385338,-,MIR,SINE,MIR,-20,248,104,37385172,37385441 +1 - chr22 37427362 37427393 chr22,37427362,37427393,+,(GTGTGA)n,Simple_repeat,Simple_repeat,1,31,0,37427362,37427393 -6 + chr22 37427394 37427435 chr22,37427394,37427435,+,(GCGTGT)n,Simple_repeat,Simple_repeat,1,80,0,37427394,37427435 -6 + chr22 37427435 37427445 chr22,37427435,37427470,+,(GT)n,Simple_repeat,Simple_repeat,1,35,0,37427435,37427470 -1 + chr22 37550071 37550084 chr22,37550071,37550197,+,MIR3,SINE,MIR,82,217,-45,37549990,37550242 +4 + chr22 37551297 37551457 chr22,37551222,37551457,+,L3,LINE,CR1,3817,4079,-20,37547406,37551477 +2 + chr22 37551537 37551709 chr22,37551537,37551709,+,MIRb,SINE,MIR,48,254,-14,37551490,37551723 +6 + chr22 37641832 37642041 chr22,37641830,37642041,-,MIRb,SINE,MIR,-2,266,36,37641828,37642076 +5 - chr22 37642183 37642336 chr22,37642183,37642336,+,MIRc,SINE,MIR,33,198,-70,37642151,37642406 -6 + chr22 37643744 37643761 chr22,37643744,37643771,+,(AGG)n,Simple_repeat,Simple_repeat,1,27,0,37643744,37643771 -2 + chr22 37650348 37650425 chr22,37650348,37650425,+,MIRb,SINE,MIR,119,197,-71,37650230,37650496 -6 + chr22 37650657 37650692 chr22,37650657,37650692,+,(CCGGCT)n,Simple_repeat,Simple_repeat,1,35,0,37650657,37650692 -6 + chr22 37876167 37876295 chr22,37876167,37876295,-,AluJb,SINE,Alu,-49,263,134,37876118,37876428 -6 - chr22 37876295 37876599 chr22,37876295,37876599,-,AluSx,SINE,Alu,0,312,1,37876295,37876599 -6 - chr22 37876996 37877322 chr22,37876996,37877322,-,Tigger3a,DNA,TcMar-Tigger,-1,347,2,37876995,37877323 -6 - chr22 37878201 37878296 chr22,37878201,37878296,-,L2a,LINE,L2,-22,3404,3305,37878179,37881600 -6 - chr22 37878296 37878432 chr22,37878296,37878432,+,FLAM_C,SINE,Alu,2,135,-8,37878295,37878440 +6 + chr22 37878432 37878459 chr22,37878432,37878459,-,L2a,LINE,L2,-122,3304,3282,37878310,37881740 -6 - chr22 37878459 37878738 chr22,37878459,37878738,-,AluSp,SINE,Alu,-9,304,25,37878450,37878762 -6 - chr22 37878738 37878940 chr22,37878738,37878940,-,L2a,LINE,L2,-145,3281,3100,37878593,37882039 -6 - chr22 37878940 37879191 chr22,37878940,37879191,-,AluSx1,SINE,Alu,-5,307,53,37878935,37879243 -6 - chr22 37879191 37879218 chr22,37879191,37879218,-,L2a,LINE,L2,-327,3099,3094,37878864,37882311 -6 - chr22 37879218 37879507 chr22,37879218,37879507,+,AluSc,SINE,Alu,1,293,-16,37879218,37879523 +6 + chr22 37879507 37879713 chr22,37879507,37879713,-,L2a,LINE,L2,-333,3093,2850,37879174,37882562 -6 - chr22 37879738 37879802 chr22,37879738,37879802,-,U4,snRNA,snRNA,-77,68,2,37879661,37879803 -6 - chr22 37879802 37880098 chr22,37879802,37880098,-,AluSg,SINE,Alu,-15,295,3,37879787,37880100 -6 - chr22 37880100 37880133 chr22,37880100,37880133,+,(TTATT)n,Simple_repeat,Simple_repeat,1,33,0,37880100,37880133 +6 + chr22 37880138 37880411 chr22,37880138,37880411,-,AluY,SINE,Alu,-38,273,2,37880100,37880412 -6 - chr22 37880411 37880779 chr22,37880411,37880779,-,AluJb,SINE,Alu,-20,292,1,37880391,37880779 -6 - chr22 37880779 37881021 chr22,37880779,37881021,-,L1ME3A,LINE,L1,-198,5975,5734,37880581,37886754 -6 - chr22 37881067 37881186 chr22,37881067,37881186,+,L1ME4b,LINE,L1,694,825,-67,37880374,37881253 +6 + chr22 37881228 37881381 chr22,37881228,37881381,-,AluSx4,SINE,Alu,-6,304,152,37881222,37881532 -6 - chr22 37881409 37881708 chr22,37881409,37881708,-,AluSp,SINE,Alu,-14,299,1,37881395,37881708 -6 - chr22 37881884 37882021 chr22,37881884,37882021,+,FLAM_C,SINE,Alu,1,131,-12,37881884,37882033 +6 + chr22 37882025 37882323 chr22,37882025,37882323,+,AluSx,SINE,Alu,2,298,-14,37882024,37882337 +6 + chr22 37882391 37882691 chr22,37882391,37882691,+,AluSx,SINE,Alu,1,297,-15,37882391,37882706 +6 + chr22 37882721 37883014 chr22,37882721,37883014,+,AluSx4,SINE,Alu,2,295,-15,37882720,37883029 +6 + chr22 37883014 37883318 chr22,37883014,37883318,+,AluSp,SINE,Alu,1,305,-8,37883014,37883326 +6 + chr22 37883326 37883591 chr22,37883326,37883591,+,AluY,SINE,Alu,28,292,-19,37883299,37883610 +6 + chr22 37883631 37883928 chr22,37883631,37883928,+,AluSz6,SINE,Alu,1,297,-15,37883631,37883943 +6 + chr22 37883942 37884458 chr22,37883942,37884458,-,L1MB7,LINE,L1,-60,6124,5619,37883882,37890076 -6 - chr22 37884625 37884862 chr22,37884625,37884862,+,AluJb,SINE,Alu,105,311,-1,37884521,37884863 +6 + chr22 37884901 37884931 chr22,37884901,37884931,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,37884901,37884931 +6 + chr22 37884953 37885224 chr22,37884953,37885224,-,AluJb,SINE,Alu,-48,264,1,37884905,37885224 -6 - chr22 37885641 37885871 chr22,37885641,37885871,-,AluSg7,SINE,Alu,-10,299,1,37885631,37885871 -6 - chr22 37885908 37886222 chr22,37885908,37886222,+,AluY,SINE,Alu,1,310,-1,37885908,37886223 +6 + chr22 37886286 37886589 chr22,37886286,37886589,+,AluSq2,SINE,Alu,1,305,-8,37886286,37886597 +6 + chr22 37886914 37887229 chr22,37886914,37887229,-,AluSz,SINE,Alu,0,312,1,37886914,37887229 -6 - chr22 37887262 37887327 chr22,37887262,37887327,+,AluJo,SINE,Alu,241,305,-7,37887022,37887334 +6 + chr22 37887327 37887563 chr22,37887327,37887563,+,AluSz,SINE,Alu,1,248,-64,37887327,37887627 +6 + chr22 37888739 37889040 chr22,37888739,37889040,-,AluSz,SINE,Alu,-9,303,1,37888730,37889040 -6 - chr22 37889051 37889350 chr22,37889051,37889350,-,AluY,SINE,Alu,-14,297,1,37889037,37889350 -6 - chr22 37889366 37889453 chr22,37889366,37889453,-,MIRc,SINE,MIR,-9,259,174,37889357,37889626 -6 - chr22 37889515 37889706 chr22,37889515,37889706,-,MIRb,SINE,MIR,-18,250,34,37889497,37889739 -6 - chr22 37889765 37889818 chr22,37889765,37889818,+,MIR,SINE,MIR,95,149,-113,37889671,37889931 +6 + chr22 37889818 37890118 chr22,37889818,37890118,+,AluY,SINE,Alu,1,298,-13,37889818,37890131 +6 + chr22 37890118 37890223 chr22,37890118,37890223,+,MIR,SINE,MIR,150,252,-10,37889969,37890233 +6 + chr22 37890369 37890479 chr22,37890369,37890479,-,AluSx,SINE,Alu,-56,256,134,37890313,37890612 -6 - chr22 37890479 37890791 chr22,37890479,37890791,-,AluSq2,SINE,Alu,0,313,2,37890479,37890792 -6 - chr22 37890791 37890923 chr22,37890791,37890923,-,AluSx,SINE,Alu,-179,133,1,37890612,37890923 -6 - chr22 37890923 37891081 chr22,37890923,37891081,-,AluSx3,SINE,Alu,-1,310,153,37890922,37891233 -6 - chr22 37891084 37891281 chr22,37891084,37891281,-,AluSx1,SINE,Alu,-117,195,1,37890967,37891281 -6 - chr22 37891346 37891440 chr22,37891346,37891440,+,U6,snRNA,snRNA,1,99,-8,37891346,37891448 +6 + chr22 37891571 37891656 chr22,37891571,37891656,+,MLT1D,LTR,ERVL-MaLR,265,351,-154,37891307,37891810 +6 + chr22 37891646 37891728 chr22,37891646,37891728,+,MLT1B,LTR,ERVL-MaLR,261,358,-32,37891386,37891760 +6 + chr22 37891827 37892289 chr22,37891827,37892289,-,L2a,LINE,L2,-41,3385,2853,37891786,37895141 -6 - chr22 37892297 37892351 chr22,37892297,37892351,-,MIRc,SINE,MIR,-149,119,63,37892148,37892413 -6 - chr22 37892351 37892653 chr22,37892351,37892653,-,AluJb,SINE,Alu,-15,297,3,37892336,37892655 -6 - chr22 37892682 37892797 chr22,37892682,37892797,-,MIRc,SINE,MIR,-2,266,146,37892680,37892942 -6 - chr22 37893398 37893584 chr22,37893398,37893584,+,MIRb,SINE,MIR,15,232,-36,37893384,37893620 +6 + chr22 37894108 37894235 chr22,37894108,37894235,-,MIR3,SINE,MIR,-76,132,10,37894032,37894244 -6 - chr22 37894258 37894569 chr22,37894258,37894569,-,AluSq2,SINE,Alu,-2,311,1,37894256,37894569 -6 - chr22 37894702 37894772 chr22,37894702,37894772,+,MIR3,SINE,MIR,128,201,-7,37894575,37894779 +6 + chr22 37895456 37895563 chr22,37895456,37895612,+,MIRc,SINE,MIR,36,191,-77,37895421,37895689 +5 + chr22 37944618 37944898 chr22,37944618,37944899,+,AluSq,SINE,Alu,1,284,-29,37944618,37944928 +5 + chr22 37948352 37948471 chr22,37948165,37948471,+,AluSx1,SINE,Alu,1,301,-11,37948165,37948482 +1 + chr22 37948471 37948650 chr22,37948471,37948650,+,AluSx,SINE,Alu,134,312,0,37948338,37948650 +6 + chr22 37948714 37949090 chr22,37948714,37949090,-,L1ME4a,LINE,L1,-108,6016,5639,37948606,37954728 -6 - chr22 37949281 37949449 chr22,37949281,37949449,-,AluSz6,SINE,Alu,-10,302,134,37949271,37949582 -6 - chr22 37949449 37949757 chr22,37949449,37949757,-,AluSq2,SINE,Alu,0,313,2,37949449,37949758 -6 - chr22 37949877 37950099 chr22,37949877,37950099,-,AluJr4,SINE,Alu,-20,292,1,37949857,37950099 -6 - chr22 37950101 37950411 chr22,37950101,37950411,-,AluSx1,SINE,Alu,-1,311,1,37950100,37950411 -6 - chr22 37950435 37950624 chr22,37950435,37950624,-,AluJr,SINE,Alu,-7,305,124,37950428,37950747 -6 - chr22 37950624 37950927 chr22,37950624,37950927,+,AluSg,SINE,Alu,1,301,-9,37950624,37950936 +6 + chr22 37950930 37951223 chr22,37950930,37951223,+,AluY,SINE,Alu,1,293,-18,37950930,37951241 +1 + chr22 37951223 37951351 chr22,37951223,37951351,-,AluJr,SINE,Alu,-189,123,2,37951034,37951352 -6 - chr22 37951565 37951781 chr22,37951565,37951781,+,L2a,LINE,L2,3147,3341,-85,37948419,37951866 +5 + chr22 37951781 37952104 chr22,37951781,37952104,-,AluSp,SINE,Alu,0,313,11,37951781,37952114 -6 - chr22 37952104 37952189 chr22,37952104,37952189,+,L2a,LINE,L2,3342,3421,-5,37948763,37952194 +6 + chr22 37952232 37952473 chr22,37952232,37952473,-,L2c,LINE,L2,-34,3353,3093,37952198,37955565 -6 - chr22 37952526 37952554 chr22,37952526,37952554,+,(C)n,Simple_repeat,Simple_repeat,1,28,0,37952526,37952554 +6 + chr22 37952581 37952661 chr22,37952581,37952661,+,MIRb,SINE,MIR,113,199,-69,37952469,37952730 +6 + chr22 37952701 37953031 chr22,37952701,37953031,+,MER1B,DNA,hAT-Charlie,1,339,0,37952701,37953031 +6 + chr22 37953310 37953334 chr22,37953310,37953334,+,(CA)n,Simple_repeat,Simple_repeat,1,24,0,37953310,37953334 +6 + chr22 37954039 37954171 chr22,37954039,37954171,-,L2c,LINE,L2,-6,3381,3253,37954033,37957423 -6 - chr22 37954305 37954600 chr22,37954305,37954600,-,AluSg,SINE,Alu,-15,295,1,37954290,37954600 -6 - chr22 37954603 37954766 chr22,37954603,37954766,-,L2c,LINE,L2,-694,2725,2563,37953909,37957328 -6 - chr22 37954801 37955256 chr22,37954801,37955256,-,L2c,LINE,L2,-1139,2280,1773,37953662,37957028 -6 - chr22 37955256 37955552 chr22,37955256,37955552,+,AluSx,SINE,Alu,1,296,-16,37955256,37955568 +6 + chr22 37955552 37955601 chr22,37955552,37955601,-,L2c,LINE,L2,-1647,1772,1724,37953905,37957324 -6 - chr22 37955670 37955983 chr22,37955670,37955983,-,AluSx1,SINE,Alu,0,312,2,37955670,37955984 -6 - chr22 37955985 37956033 chr22,37955985,37956033,-,L2a,LINE,L2,0,3426,3379,37955985,37959411 -6 - chr22 37956059 37956355 chr22,37956059,37956355,-,AluSp,SINE,Alu,0,313,21,37956059,37956375 -6 - chr22 37956402 37956716 chr22,37956402,37956716,-,AluSz6,SINE,Alu,0,312,1,37956402,37956716 -6 - chr22 37957097 37957178 chr22,37957097,37957178,-,L2c,LINE,L2,-1,3425,3337,37957096,37960514 -6 - chr22 37957214 37957500 chr22,37957214,37957500,-,L2,LINE,L2,-540,2879,2519,37956674,37960018 -6 - chr22 37957879 37957966 chr22,37957879,37957966,+,L2b,LINE,L2,2717,2805,-614,37955163,37958580 +6 + chr22 37957989 37958176 chr22,37957989,37958176,-,FAM,SINE,Alu,-2,183,1,37957987,37958176 -6 - chr22 37958187 37958493 chr22,37958187,37958493,-,AluY,SINE,Alu,-11,300,1,37958176,37958493 -6 - chr22 37958528 37958885 chr22,37958528,37958885,+,L2b,LINE,L2,2947,3379,-8,37955582,37958893 +6 + chr22 37958901 37958989 chr22,37958901,37958989,+,MIR1_Amn,SINE,MIR,92,184,-46,37958810,37959035 +6 + chr22 37959066 37959256 chr22,37959066,37959256,+,MIRb,SINE,MIR,42,263,-5,37959025,37959261 +6 + chr22 37959607 37959702 chr22,37959607,37959702,-,L2c,LINE,L2,-79,3308,3236,37959528,37962937 -6 - chr22 37959803 37960103 chr22,37959803,37960103,-,AluSz6,SINE,Alu,-12,300,1,37959791,37960103 -6 - chr22 37960111 37960218 chr22,37960111,37960218,-,AluJo,SINE,Alu,-10,302,207,37960101,37960424 -6 - chr22 37960218 37960390 chr22,37960218,37960390,-,AluSg4,SINE,Alu,-5,305,133,37960213,37960522 -6 - chr22 37960390 37960699 chr22,37960390,37960699,-,AluY,SINE,Alu,-5,306,2,37960385,37960700 -6 - chr22 37960699 37960832 chr22,37960699,37960832,-,AluSg4,SINE,Alu,-178,132,1,37960521,37960832 -6 - chr22 37960839 37961148 chr22,37960839,37961148,-,AluY,SINE,Alu,-3,308,1,37960836,37961148 -6 - chr22 37961148 37961359 chr22,37961148,37961359,-,AluJo,SINE,Alu,-106,206,2,37961042,37961360 -6 - chr22 37961694 37961798 chr22,37961694,37961798,-,LTR79,LTR,ERVL,-346,181,80,37961348,37961877 -6 - chr22 37961949 37962227 chr22,37961949,37962227,+,AluJb,SINE,Alu,2,283,-29,37961948,37962256 +6 + chr22 37962227 37962261 chr22,37962227,37962261,+,(AAAC)n,Simple_repeat,Simple_repeat,1,35,0,37962227,37962261 +6 + chr22 37962569 37962676 chr22,37962569,37962676,-,MER3,DNA,hAT-Charlie,0,209,113,37962569,37962788 -6 - chr22 37962676 37962989 chr22,37962676,37962989,-,AluY,SINE,Alu,0,311,1,37962676,37962989 -6 - chr22 37962991 37963290 chr22,37962991,37963290,-,AluSx1,SINE,Alu,-17,295,1,37962974,37963290 -6 - chr22 37963290 37963548 chr22,37963290,37963548,-,AluJr,SINE,Alu,-12,300,24,37963278,37963571 -6 - chr22 37963548 37963658 chr22,37963548,37963658,-,MER3,DNA,hAT-Charlie,-97,112,8,37963451,37963665 -6 - chr22 37963820 37964127 chr22,37963820,37964127,+,AluSx,SINE,Alu,2,310,-2,37963819,37964129 +6 + chr22 37964558 37964872 chr22,37964558,37964872,-,AluSq2,SINE,Alu,0,313,1,37964558,37964872 -6 - chr22 37965025 37965306 chr22,37965025,37965306,-,AluSx3,SINE,Alu,-31,280,1,37964994,37965306 -6 - chr22 37965726 37965874 chr22,37965726,37965874,+,MER5A,DNA,hAT-Charlie,17,162,-27,37965710,37965901 +6 + chr22 37965988 37966342 chr22,37965988,37966342,-,L2c,LINE,L2,-38,3349,2915,37965950,37969256 -6 - chr22 37966412 37966452 chr22,37966412,37966452,+,G-rich,Low_complexity,Low_complexity,1,42,0,37966412,37966452 +6 + chr22 37966491 37966791 chr22,37966491,37966791,+,AluJb,SINE,Alu,2,308,-4,37966490,37966795 +6 + chr22 37969611 37970012 chr22,37969611,37970012,+,L3b,LINE,CR1,2655,3087,-1012,37966957,37971024 +6 + chr22 37970012 37970308 chr22,37970012,37970308,+,AluY,SINE,Alu,2,296,-15,37970011,37970323 +6 + chr22 37970308 37970320 chr22,37970308,37970320,+,L3b,LINE,CR1,3088,3091,-1008,37967221,37971328 +6 + chr22 37970320 37970630 chr22,37970320,37970630,+,AluSc,SINE,Alu,1,304,-5,37970320,37970635 +6 + chr22 37970630 37970989 chr22,37970630,37970989,+,L3b,LINE,CR1,3092,3496,-603,37967539,37971592 +6 + chr22 37971201 37971402 chr22,37971201,37971402,+,MIR,SINE,MIR,11,261,-7,37971191,37971409 +6 + chr22 37971374 37971467 chr22,37971374,37971467,+,L3b,LINE,CR1,4987,5074,-158,37966388,37971625 +6 + chr22 37972022 37972194 chr22,37972022,37972194,+,GA-rich,Low_complexity,Low_complexity,1,183,0,37972022,37972194 +6 + chr22 37973447 37973481 chr22,37973447,37973481,+,(GGCTGG)n,Simple_repeat,Simple_repeat,1,35,0,37973447,37973481 +6 + chr22 37974347 37974648 chr22,37974347,37974648,-,AluSq,SINE,Alu,-8,305,5,37974339,37974652 -6 - chr22 37975136 37975418 chr22,37975136,37975418,-,L2c,LINE,L2,-4,3383,3099,37975132,37978516 -6 - chr22 37975565 37975626 chr22,37975565,37975626,+,L2c,LINE,L2,3263,3325,-62,37972303,37975688 +6 + chr22 37975631 37975772 chr22,37975631,37975772,+,MIRb,SINE,MIR,4,158,-110,37975628,37975882 +6 + chr22 37975777 37975816 chr22,37975777,37975816,+,L2a,LINE,L2,3122,3160,-227,37972656,37976043 +6 + chr22 37975935 37975958 chr22,37975935,37975958,-,AluJr,SINE,Alu,-183,129,2,37975752,37975959 -6 - chr22 37975958 37976248 chr22,37975958,37976248,+,AluSx,SINE,Alu,1,308,-4,37975958,37976252 +6 + chr22 37976248 37976359 chr22,37976248,37976359,-,FLAM_A,SINE,Alu,-31,111,1,37976217,37976359 -6 - chr22 37976373 37976517 chr22,37976373,37976517,+,L2a,LINE,L2,3222,3401,-25,37973152,37976542 +6 + chr22 37976520 37976583 chr22,37976520,37976583,-,MIRb,SINE,MIR,-6,262,198,37976514,37976780 -6 - chr22 37976672 37976713 chr22,37976672,37976713,-,MIR,SINE,MIR,-184,78,39,37976488,37976751 -6 - chr22 37976714 37976821 chr22,37976714,37976821,+,MIR,SINE,MIR,160,262,0,37976555,37976821 +6 + chr22 37976921 37977187 chr22,37976921,37977187,+,AluSx,SINE,Alu,38,302,-10,37976884,37977197 +6 + chr22 37977315 37977618 chr22,37977315,37977618,-,AluY,SINE,Alu,-7,304,2,37977308,37977619 -6 - chr22 37978210 37978569 chr22,37978210,37978569,+,L3,LINE,CR1,3606,3997,-102,37974605,37978671 +6 + chr22 37978537 37978737 chr22,37978537,37978737,+,MIRb,SINE,MIR,23,230,-38,37978515,37978775 +6 + chr22 37978769 37979076 chr22,37978769,37979076,-,AluSx,SINE,Alu,-5,307,1,37978764,37979076 -6 - chr22 37979086 37979397 chr22,37979086,37979397,-,AluSx,SINE,Alu,-1,311,1,37979085,37979397 -6 - chr22 37980048 37980084 chr22,37980048,37980084,+,(CCCCAG)n,Simple_repeat,Simple_repeat,1,38,0,37980048,37980084 +6 + chr22 37980566 37980689 chr22,37980566,37980689,+,(ACCCCA)n,Simple_repeat,Simple_repeat,1,123,0,37980566,37980689 +6 + chr22 37982191 37982334 chr22,37982191,37982334,+,MIR3,SINE,MIR,15,163,-67,37982177,37982401 +6 + chr22 37983786 37983840 chr22,37983786,37983840,+,(CGC)n,Simple_repeat,Simple_repeat,1,55,0,37983786,37983840 +6 + chr22 37984977 37985013 chr22,37984977,37985013,-,L2a,LINE,L2,-15,3411,3375,37984962,37988387 -6 - chr22 37984983 37985029 chr22,37984983,37985029,-,MIRb,SINE,MIR,-18,250,206,37984965,37985234 -6 - chr22 37985400 37985441 chr22,37985400,37985441,+,(CCCT)n,Simple_repeat,Simple_repeat,1,42,0,37985400,37985441 +6 + chr22 37985818 37985867 chr22,37985818,37985867,+,(AC)n,Simple_repeat,Simple_repeat,1,49,0,37985818,37985867 +6 + chr22 37986267 37986296 chr22,37986267,37986296,+,(CTGC)n,Simple_repeat,Simple_repeat,1,31,0,37986267,37986296 +6 + chr22 37987628 37987748 chr22,37987628,37987748,+,MIRb,SINE,MIR,99,221,-47,37987530,37987795 +6 + chr22 37987921 37987977 chr22,37987921,37987977,-,MER5A1,DNA,hAT-Charlie,-64,102,47,37987857,37988023 -6 - chr22 37988041 37988360 chr22,37988041,37988360,+,AluSq2,SINE,Alu,1,313,0,37988041,37988360 +6 + chr22 37988369 37988680 chr22,37988369,37988680,+,AluSx,SINE,Alu,2,312,0,37988368,37988680 +6 + chr22 37988690 37988748 chr22,37988690,37988748,+,MER5B,DNA,hAT-Charlie,62,119,-59,37988629,37988807 +6 + chr22 37989106 37989328 chr22,37989106,37989328,+,MIR,SINE,MIR,12,257,-5,37989095,37989333 +6 + chr22 37989565 37989781 chr22,37989565,37989781,-,MIR,SINE,MIR,-25,237,2,37989540,37989782 -6 - chr22 37990523 37990637 chr22,37990523,37990637,-,L2b,LINE,L2,-25,3350,3231,37990498,37993867 -6 - chr22 37990665 37990854 chr22,37990665,37990854,+,MIR3,SINE,MIR,33,213,-17,37990633,37990871 +6 + chr22 37991003 37991118 chr22,37991003,37991118,+,AluJo,SINE,Alu,5,118,-194,37990999,37991312 +6 + chr22 37991118 37991145 chr22,37991118,37991145,+,(TTA)n,Simple_repeat,Simple_repeat,1,28,0,37991118,37991145 +6 + chr22 37991145 37991418 chr22,37991145,37991418,-,AluSx3,SINE,Alu,-36,275,1,37991109,37991418 -6 - chr22 37992050 37992135 chr22,37992050,37992135,-,AluJr,SINE,Alu,-92,220,136,37991958,37992270 -6 - chr22 37992137 37992317 chr22,37992137,37992317,+,MIRb,SINE,MIR,51,268,0,37992087,37992317 +6 + chr22 37992384 37992698 chr22,37992384,37992698,-,AluSx,SINE,Alu,-10,302,1,37992374,37992698 -6 - chr22 37993200 37993330 chr22,37993200,37993330,-,MIRc,SINE,MIR,-115,153,16,37993085,37993345 -6 - chr22 37993554 37993707 chr22,37993554,37993707,+,MIRb,SINE,MIR,28,196,-72,37993527,37993779 +6 + chr22 37993707 37993995 chr22,37993707,37993995,+,AluY,SINE,Alu,1,288,-23,37993707,37994018 +6 + chr22 37993995 37994027 chr22,37993995,37994027,+,MIRb,SINE,MIR,197,228,-40,37993799,37994067 +6 + chr22 37994342 37994512 chr22,37994342,37994512,-,AluJb,SINE,Alu,-7,305,136,37994335,37994647 -6 - chr22 37994512 37994805 chr22,37994512,37994805,-,AluYc,SINE,Alu,-6,293,1,37994506,37994805 -6 - chr22 37994805 37994934 chr22,37994805,37994934,-,AluJb,SINE,Alu,-177,135,11,37994628,37994944 -6 - chr22 37995059 37995222 chr22,37995059,37995222,+,MIR3,SINE,MIR,56,211,-19,37995004,37995241 +6 + chr22 37995197 37995309 chr22,37995197,37995309,+,L2b,LINE,L2,3262,3366,-9,37991936,37995318 +6 + chr22 37995334 37995607 chr22,37995334,37995607,+,L2a,LINE,L2,3051,3328,-98,37992284,37995705 +6 + chr22 37995693 37996013 chr22,37995693,37996013,+,AluJb,SINE,Alu,4,294,-18,37995690,37996031 +6 + chr22 37996623 37996765 chr22,37996623,37996765,+,MIR3,SINE,MIR,4,140,-68,37996620,37996833 +6 + chr22 37996766 37996915 chr22,37996766,37996915,-,MER5A,DNA,hAT-Charlie,-2,187,17,37996764,37996931 -6 - chr22 37997042 37997104 chr22,37997042,37997104,+,G-rich,Low_complexity,Low_complexity,1,62,0,37997042,37997104 +6 + chr22 37998807 37998889 chr22,37998807,37998889,+,GA-rich,Low_complexity,Low_complexity,1,83,0,37998807,37998889 +6 + chr22 37999649 37999841 chr22,37999649,37999841,+,MIRb,SINE,MIR,4,224,-44,37999646,37999885 +6 + chr22 37999857 37999890 chr22,37999857,37999890,+,(TTGTTA)n,Simple_repeat,Simple_repeat,1,33,0,37999857,37999890 +6 + chr22 38000215 38000312 chr22,38000215,38000312,-,MIR3,SINE,MIR,-6,202,104,38000209,38000415 -6 - chr22 38000434 38000528 chr22,38000434,38000528,+,MIRc,SINE,MIR,163,263,-5,38000272,38000533 +6 + chr22 38000873 38000951 chr22,38000873,38000951,+,L2b,LINE,L2,3296,3372,-3,37997578,38000954 +6 + chr22 38001090 38001259 chr22,38001090,38001259,+,MIRb,SINE,MIR,20,206,-62,38001071,38001321 +6 + chr22 38001537 38001832 chr22,38001537,38001832,-,AluSz,SINE,Alu,-16,296,1,38001521,38001832 -6 - chr22 38001838 38002149 chr22,38001838,38002149,-,AluSx1,SINE,Alu,-22,290,1,38001816,38002149 -6 - chr22 38002149 38002176 chr22,38002149,38002176,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,38002149,38002176 +6 + chr22 38002209 38002445 chr22,38002209,38002445,+,ORSL-2a,DNA,hAT-Tip100,54,315,-27,38002156,38002472 +6 + chr22 38002445 38002584 chr22,38002445,38002584,-,AluSx1,SINE,Alu,-85,227,89,38002360,38002672 -6 - chr22 38002731 38002889 chr22,38002731,38003024,-,AluY,SINE,Alu,-18,293,1,38002713,38003024 -5 - chr22 38032165 38032292 chr22,38031987,38032292,-,AluJr,SINE,Alu,-2,310,6,38031985,38032297 +5 - chr22 38032545 38032794 chr22,38032545,38032794,-,L2b,LINE,L2,-20,3355,3080,38032525,38035873 +6 - chr22 38033075 38033155 chr22,38033075,38033190,+,AluJb,SINE,Alu,200,312,0,38032876,38033190 -2 + chr22 38090127 38090411 chr22,38090099,38090411,-,AluSx1,SINE,Alu,0,312,1,38090099,38090411 -1 - chr22 38090571 38090758 chr22,38090571,38090758,-,MIRb,SINE,MIR,-6,262,78,38090565,38090835 -6 - chr22 38091055 38091355 chr22,38091055,38091355,-,AluSx4,SINE,Alu,-10,300,1,38091045,38091355 -6 - chr22 38091364 38091538 chr22,38091364,38091538,+,L1MA2,LINE,L1,6129,6304,0,38085236,38091538 +6 + chr22 38130317 38130615 chr22,38130317,38130615,-,AluSx3,SINE,Alu,-12,299,2,38130305,38130616 -6 - chr22 38130617 38130719 chr22,38130617,38130719,+,MER113,DNA,hAT-Charlie,319,412,-109,38130299,38130828 +6 + chr22 38130719 38131018 chr22,38130719,38131018,+,AluSp,SINE,Alu,1,300,-13,38130719,38131031 +6 + chr22 38131018 38131115 chr22,38131018,38131115,+,MER113,DNA,hAT-Charlie,413,510,-11,38130606,38131126 +6 + chr22 38131117 38131176 chr22,38131117,38131176,+,Charlie1,DNA,hAT-Charlie,1,59,-2722,38131117,38133898 +6 + chr22 38131179 38131319 chr22,38131179,38131319,-,AluSx,SINE,Alu,-166,146,1,38131013,38131319 -6 - chr22 38131352 38131391 chr22,38131352,38131391,-,L1MA3,LINE,L1,-1,6304,6266,38131351,38137656 -6 - chr22 38131391 38131559 chr22,38131391,38131559,+,Charlie1a,DNA,hAT-Charlie,1285,1455,0,38130107,38131559 +6 + chr22 38131614 38131770 chr22,38131614,38131770,-,X7A_LINE,LINE,CR1,-98,169,1,38131516,38131770 -6 - chr22 38131810 38132126 chr22,38131810,38132126,+,AluSg,SINE,Alu,5,292,-18,38131806,38132144 +6 + chr22 38132204 38132279 chr22,38132204,38132279,+,L2c,LINE,L2,3280,3349,-38,38128925,38132317 +6 + chr22 38132453 38132555 chr22,38132453,38132555,-,MIRb,SINE,MIR,-89,179,63,38132364,38132617 -6 - chr22 38132579 38132765 chr22,38132579,38132765,-,L2c,LINE,L2,-155,3232,3064,38132424,38135828 -6 - chr22 38133398 38133621 chr22,38133398,38133621,+,MIRb,SINE,MIR,1,231,-37,38133398,38133658 +6 + chr22 38133841 38133889 chr22,38133841,38133889,+,(CAT)n,Simple_repeat,Simple_repeat,1,48,0,38133841,38133889 +6 + chr22 38133889 38134279 chr22,38133889,38134279,+,MLT2A2,LTR,ERVL,3,400,-53,38133887,38134332 +6 + chr22 38134279 38134586 chr22,38134279,38134586,+,AluY,SINE,Alu,1,306,-5,38134279,38134591 +6 + chr22 38134586 38134651 chr22,38134586,38134651,+,MLT2A2,LTR,ERVL,401,451,-2,38134186,38134653 +6 + chr22 38134651 38134666 chr22,38134651,38134666,+,(CAT)n,Simple_repeat,Simple_repeat,1,13,0,38134651,38134666 +6 + chr22 38134671 38134850 chr22,38134671,38134850,-,MIRc,SINE,MIR,-13,255,38,38134658,38134887 -6 - chr22 38135322 38135374 chr22,38135322,38135374,+,MIRb,SINE,MIR,30,81,-187,38135293,38135561 +6 + chr22 38135700 38135756 chr22,38135700,38135756,-,MamGypLTR1d,LTR,Gypsy,0,813,759,38135700,38136514 -6 - chr22 38135767 38135845 chr22,38135767,38135845,+,AluSp,SINE,Alu,1,78,-235,38135767,38136080 +6 + chr22 38135848 38136306 chr22,38135848,38136306,+,L1MB4,LINE,L1,5653,6141,-39,38130196,38136345 +6 + chr22 38136306 38136609 chr22,38136306,38136609,+,AluSp,SINE,Alu,1,300,-13,38136306,38136622 +6 + chr22 38136609 38136663 chr22,38136609,38136663,+,L1MB4,LINE,L1,6142,6180,0,38130468,38136663 +6 + chr22 38136670 38136744 chr22,38136670,38136744,+,L1MB8,LINE,L1,6093,6172,-6,38130578,38136750 +6 + chr22 38136769 38136872 chr22,38136769,38136872,+,MIRb,SINE,MIR,32,142,-126,38136738,38136998 +6 + chr22 38136872 38137036 chr22,38136872,38137036,-,AluJo,SINE,Alu,-12,300,137,38136860,38137172 -6 - chr22 38137036 38137156 chr22,38137036,38137156,+,MIRb,SINE,MIR,143,268,0,38136894,38137156 +6 + chr22 38137551 38137863 chr22,38137551,38137863,+,AluSx,SINE,Alu,1,312,0,38137551,38137863 +6 + chr22 38138470 38138524 chr22,38138470,38138524,+,(TGCC)n,Simple_repeat,Simple_repeat,1,56,0,38138470,38138524 +6 + chr22 38138676 38138969 chr22,38138676,38138969,-,AluSx,SINE,Alu,-19,293,1,38138657,38138969 -6 - chr22 38139265 38139409 chr22,38139265,38139409,+,MamGypLTR1d,LTR,Gypsy,610,752,-61,38138656,38139470 +6 + chr22 38139415 38139734 chr22,38139415,38139734,-,AluSp,SINE,Alu,0,313,1,38139415,38139734 -6 - chr22 38139734 38139801 chr22,38139734,38139801,+,MamGypLTR1d,LTR,Gypsy,753,813,0,38138982,38139801 +6 + chr22 38140225 38140519 chr22,38140225,38140519,+,AluSx1,SINE,Alu,1,293,-19,38140225,38140538 +6 + chr22 38140768 38140912 chr22,38140768,38140912,+,AluJr,SINE,Alu,1,141,-171,38140768,38141083 +6 + chr22 38140912 38141207 chr22,38140912,38141207,+,AluY,SINE,Alu,3,295,-16,38140910,38141223 +6 + chr22 38141207 38141367 chr22,38141207,38141367,+,AluJr,SINE,Alu,142,294,-18,38141066,38141385 +6 + chr22 38141502 38141738 chr22,38141502,38141738,+,MIRb,SINE,MIR,19,260,-8,38141484,38141746 +6 + chr22 38141912 38142221 chr22,38141912,38142221,+,AluSz6,SINE,Alu,1,309,-3,38141912,38142224 +6 + chr22 38142518 38142734 chr22,38142518,38142734,-,MER30,DNA,hAT-Charlie,-1,229,1,38142517,38142734 -6 - chr22 38143589 38143729 chr22,38143589,38143729,+,MIRc,SINE,MIR,90,240,-28,38143500,38143757 +6 + chr22 38143737 38144043 chr22,38143737,38144043,-,AluSq,SINE,Alu,-7,306,1,38143730,38144043 -6 - chr22 38144347 38144658 chr22,38144347,38144658,+,AluSx1,SINE,Alu,1,308,-4,38144347,38144662 +6 + chr22 38144658 38144819 chr22,38144658,38144819,+,AluSx,SINE,Alu,134,294,-18,38144525,38144837 +6 + chr22 38144820 38144887 chr22,38144820,38144887,+,(ATAAA)n,Simple_repeat,Simple_repeat,1,67,0,38144820,38144887 +6 + chr22 38145032 38145328 chr22,38145032,38145328,-,AluJr4,SINE,Alu,-3,309,1,38145029,38145328 -6 - chr22 38145784 38145834 chr22,38145784,38145834,+,(AC)n,Simple_repeat,Simple_repeat,1,50,0,38145784,38145834 +6 + chr22 38145876 38146039 chr22,38145876,38146039,-,AluJr,SINE,Alu,-15,297,134,38145861,38146172 -6 - chr22 38146039 38146329 chr22,38146039,38146329,-,AluSx,SINE,Alu,-16,296,8,38146023,38146336 -6 - chr22 38146329 38146472 chr22,38146329,38146472,-,AluJr,SINE,Alu,-179,133,12,38146150,38146483 -6 - chr22 38146660 38146753 chr22,38146660,38146753,+,L1ME4a,LINE,L1,5741,5838,-286,38140920,38147039 +6 + chr22 38146766 38147080 chr22,38146766,38147080,-,AluSq2,SINE,Alu,0,313,1,38146766,38147080 -6 - chr22 38147102 38147298 chr22,38147102,38147298,+,MIRc,SINE,MIR,53,265,-3,38147050,38147301 +6 + chr22 38147538 38147851 chr22,38147538,38147851,-,AluSz,SINE,Alu,-10,302,1,38147528,38147851 -6 - chr22 38148004 38148068 chr22,38148004,38148068,+,L2,LINE,L2,2175,2236,-1183,38145830,38149251 +6 + chr22 38148070 38148317 chr22,38148070,38148317,-,L2,LINE,L2,-1342,2077,1821,38146728,38150137 -6 - chr22 38148357 38148487 chr22,38148357,38148487,+,L1MEg,LINE,L1,1,128,-5956,38148357,38154443 +6 + chr22 38148549 38148859 chr22,38148549,38148859,+,L1MEg,LINE,L1,236,539,-5545,38148314,38154404 +6 + chr22 38148859 38149164 chr22,38148859,38149164,-,AluSc8,SINE,Alu,0,311,1,38148859,38149164 -6 - chr22 38149164 38149658 chr22,38149164,38149658,+,L1MEg,LINE,L1,540,1110,-4974,38148625,38154632 +6 + chr22 38149660 38149934 chr22,38149660,38149934,+,AluSq,SINE,Alu,1,283,-30,38149660,38149964 +6 + chr22 38149935 38150001 chr22,38149935,38150001,+,AluSq,SINE,Alu,234,300,-13,38149702,38150014 +6 + chr22 38150051 38150096 chr22,38150051,38150096,+,A-rich,Low_complexity,Low_complexity,1,45,0,38150051,38150096 +6 + chr22 38150122 38150584 chr22,38150122,38150584,+,MLT1G1,LTR,ERVL-MaLR,1,549,0,38150122,38150584 +6 + chr22 38231392 38231415 chr22,38231392,38231591,+,L1ME3B,LINE,L1,5795,5996,-246,38225598,38231837 +4 + chr22 38259960 38260207 chr22,38259939,38260207,-,AluSx4,SINE,Alu,-8,302,1,38259931,38260207 +5 - chr22 38260207 38260355 chr22,38260207,38260355,-,AluSz,SINE,Alu,-169,143,1,38260038,38260355 +6 - chr22 38260356 38260405 chr22,38260356,38260405,+,MLT1D,LTR,ERVL-MaLR,439,490,-15,38259918,38260420 -6 + chr22 38260406 38260469 chr22,38260406,38260469,-,MIR1_Amn,SINE,MIR,-82,148,85,38260324,38260553 +6 - chr22 38260487 38260705 chr22,38260487,38260705,+,MIR,SINE,MIR,6,229,-33,38260482,38260738 -6 + chr22 38261922 38262330 chr22,38261922,38262330,+,L1ME3,LINE,L1,5619,6074,-88,38256304,38262418 -6 + chr22 38262339 38262475 chr22,38262339,38262475,-,L2c,LINE,L2,-222,3165,3025,38262117,38265499 +6 - chr22 38262893 38263202 chr22,38262893,38263202,-,AluSz,SINE,Alu,-3,309,1,38262890,38263202 +6 - chr22 38263380 38263732 chr22,38263380,38263732,-,L1ME4b,LINE,L1,-202,690,326,38263178,38264057 +6 - chr22 38263806 38264104 chr22,38263806,38264104,-,AluSz,SINE,Alu,-14,298,1,38263792,38264104 +6 - chr22 38265146 38265356 chr22,38265146,38265356,+,L2b,LINE,L2,2998,3208,-167,38262149,38265523 -6 + chr22 38265451 38265675 chr22,38265451,38265675,+,MIRb,SINE,MIR,5,267,-1,38265447,38265676 -6 + chr22 38266350 38266452 chr22,38266350,38266452,-,MIRc,SINE,MIR,-76,192,88,38266274,38266539 +6 - chr22 38424813 38424972 chr22,38424586,38425085,+,MLT1H,LTR,ERVL-MaLR,1,545,-4,38424586,38425089 +3 + chr22 38666508 38666569 chr22,38666417,38666569,-,Charlie7,DNA,hAT-Charlie,-2250,362,209,38664167,38666777 +5 - chr22 38666690 38666736 chr22,38666690,38667001,-,AluSx3,SINE,Alu,0,311,1,38666690,38667001 +2 - chr22 38667585 38667907 chr22,38667538,38667907,-,MSTD,LTR,ERVL-MaLR,-1,395,1,38667537,38667907 +5 - chr22 38668570 38668670 chr22,38668370,38668670,-,AluSx1,SINE,Alu,-13,299,1,38668357,38668670 +4 - chr22 38669705 38669804 chr22,38669705,38669804,+,L2c,LINE,L2,3289,3387,0,38666417,38669804 -6 + chr22 38669809 38669948 chr22,38669809,38669948,+,AluSz,SINE,Alu,1,136,-176,38669809,38670124 -6 + chr22 38669948 38670237 chr22,38669948,38670237,+,AluSx4,SINE,Alu,1,288,-22,38669948,38670259 -6 + chr22 38670237 38670303 chr22,38670237,38670422,+,AluSz,SINE,Alu,137,310,-2,38670101,38670424 -1 + chr22 38671253 38671550 chr22,38671253,38671550,-,L2c,LINE,L2,-5,3382,3056,38671248,38674605 +6 - chr22 38675939 38676019 chr22,38675939,38676019,-,L2,LINE,L2,-541,2878,2803,38675398,38678821 +6 - chr22 38676019 38676326 chr22,38676019,38676326,+,AluJb,SINE,Alu,2,307,-5,38676018,38676331 -6 + chr22 38676326 38676392 chr22,38676326,38676392,-,L2,LINE,L2,-617,2802,2738,38675709,38679129 +6 - chr22 38676392 38676444 chr22,38676392,38676444,-,L2,LINE,L2,-743,2676,2623,38675649,38679066 +6 - chr22 38743495 38743608 chr22,38743304,38743608,+,AluSq2,SINE,Alu,1,304,-9,38743304,38743617 +1 + chr22 38743868 38743907 chr22,38743868,38743907,+,U6,snRNA,snRNA,1,39,-68,38743868,38743975 +6 + chr22 38924117 38924185 chr22,38923939,38924185,+,MLT1K,LTR,ERVL-MaLR,186,435,-160,38923754,38924345 +2 + chr22 38924219 38924284 chr22,38924219,38924284,+,MLT1K,LTR,ERVL-MaLR,524,588,-7,38923696,38924291 +6 + chr22 38924291 38924708 chr22,38924291,38925466,-,Charlie25,DNA,hAT-Charlie,-987,1537,299,38923304,38925764 -5 - chr22 38997635 38997737 chr22,38997635,38997753,+,L2c,LINE,L2,3277,3386,-1,38994359,38997754 -2 + chr22 38998086 38998209 chr22,38998074,38999144,-,MER11C,LTR,ERVK,0,1071,1,38998074,38999144 +1 - chr22 39134315 39134383 chr22,39134315,39134383,+,MIR3,SINE,MIR,128,196,-12,39134188,39134395 +6 + chr22 39135390 39135782 chr22,39135390,39135782,+,LTR89,LTR,ERVL?,292,718,-161,39135099,39135943 +6 + chr22 39135807 39136115 chr22,39135807,39136115,+,AluSx1,SINE,Alu,1,308,-4,39135807,39136119 +6 + chr22 39136207 39136284 chr22,39136207,39136284,+,MIRb,SINE,MIR,82,162,-106,39136126,39136390 +6 + chr22 39136284 39136760 chr22,39136284,39136765,+,MLT1F,LTR,ERVL-MaLR,1,548,0,39136284,39136765 +5 + chr22 39293803 39293844 chr22,39293536,39293844,+,L2a,LINE,L2,3027,3348,-78,39290510,39293922 +2 + chr22 39293892 39294017 chr22,39293892,39294017,-,L1ME3A,LINE,L1,-84,6089,5969,39293808,39299985 -6 - chr22 39294237 39294307 chr22,39294237,39294307,-,L2b,LINE,L2,-1054,2365,2296,39293183,39296602 -6 - chr22 39294439 39294526 chr22,39294439,39294526,-,MIRc,SINE,MIR,-117,151,60,39294322,39294585 -6 - chr22 39294945 39295110 chr22,39294945,39295110,-,MIR3,SINE,MIR,-45,163,1,39294900,39295110 -6 - chr22 39295349 39295435 chr22,39295349,39295435,+,MER63B,DNA,hAT-Blackjack,42,127,-309,39295308,39295744 +6 + chr22 39295435 39295563 chr22,39295435,39295768,+,AluSz,SINE,Alu,1,312,0,39295435,39295768 +5 + chr22 39379610 39379661 chr22,39379352,39379661,+,AluSx1,SINE,Alu,2,310,-2,39379351,39379663 +1 + chr22 39379870 39379921 chr22,39379870,39379921,+,MIR3,SINE,MIR,102,154,-54,39379769,39379975 +6 + chr22 39475831 39475939 chr22,39475831,39475957,+,FLAM_A,SINE,Alu,1,132,-10,39475831,39475967 -2 + chr22 39476697 39476800 chr22,39476697,39476800,+,MIRc,SINE,MIR,59,163,-105,39476639,39476905 -6 + chr22 39960397 39960526 chr22,39960348,39960526,+,L2c,LINE,L2,3236,3424,-2,39957113,39960528 +1 + chr22 39960664 39960867 chr22,39960664,39960867,-,MER39,LTR,ERV1,-3,704,374,39960661,39961240 -6 - chr22 39960867 39960919 chr22,39960867,39960950,-,MER21A,LTR,ERVL,-584,347,290,39960283,39961239 -4 - chr22 39963920 39964024 chr22,39963735,39964024,+,AluY,SINE,Alu,1,290,-21,39963735,39964045 +2 + chr22 40043175 40043300 chr22,40043175,40043300,-,AmnSINE1,SINE,5S-Deu-L2,-155,420,304,40043020,40043603 +6 - chr22 40043849 40044071 chr22,40043849,40044071,+,MIRb,SINE,MIR,5,242,-26,40043845,40044097 -6 + chr22 40376264 40376301 chr22,40376264,40376301,+,(GCTT)n,Simple_repeat,Simple_repeat,1,38,0,40376264,40376301 -4 + chr22 40376302 40376452 chr22,40376302,40376452,-,AluJo,SINE,Alu,-28,284,137,40376274,40376588 +6 - chr22 40376452 40376515 chr22,40376452,40376548,+,MIR,SINE,MIR,61,169,-93,40376392,40376641 -2 + chr22 40378170 40378263 chr22,40378147,40378425,+,AluJr4,SINE,Alu,1,279,-33,40378147,40378458 -3 + chr22 40521838 40521855 chr22,40521838,40521855,+,(TC)n,Simple_repeat,Simple_repeat,1,18,0,40521838,40521855 +6 + chr22 40521855 40522152 chr22,40521855,40522152,-,AluSc,SINE,Alu,-17,292,1,40521838,40522152 -6 - chr22 40522529 40522825 chr22,40522529,40522825,-,AluSz,SINE,Alu,-16,296,1,40522513,40522825 -6 - chr22 40522958 40522973 chr22,40522958,40523075,+,MIR3,SINE,MIR,81,198,-10,40522878,40523085 +4 + chr22 40523366 40523440 chr22,40523350,40523638,-,AluJb,SINE,Alu,-22,290,2,40523328,40523639 -3 - chr22 40523525 40523638 chr22,40523350,40523638,-,AluJb,SINE,Alu,-22,290,2,40523328,40523639 -2 - chr22 40523638 40523718 chr22,40523638,40523765,-,MER5A1,DNA,hAT-Charlie,-34,132,1,40523604,40523765 -1 - chr22 40526219 40526322 chr22,40526017,40526322,-,AluJr,SINE,Alu,-16,296,11,40526001,40526332 -2 - chr22 40526322 40526655 chr22,40526322,40526655,-,L2a,LINE,L2,-267,3159,2799,40526055,40529453 -6 - chr22 40526668 40526707 chr22,40526668,40526803,+,MIRb,SINE,MIR,36,205,-63,40526633,40526866 +5 + chr22 40539690 40539801 chr22,40539505,40539801,-,AluSc,SINE,Alu,-12,297,1,40539493,40539801 -2 - chr22 40539812 40539822 chr22,40539812,40539905,-,L1MC5a,LINE,L1,-236,2541,2438,40539576,40542342 -4 - chr22 40539935 40540052 chr22,40539905,40540211,-,AluJb,SINE,Alu,-8,304,1,40539897,40540211 -3 - chr22 40561343 40561397 chr22,40561343,40561507,+,AluSx3,SINE,Alu,135,298,-13,40561209,40561520 +5 + chr22 41169250 41169348 chr22,41169250,41169348,-,L2a,LINE,L2,-10,3416,3286,41169240,41172633 +6 - chr22 41183063 41183103 chr22,41182988,41183103,-,MIRb,SINE,MIR,-116,152,22,41182872,41183124 +4 - chr22 41209122 41209406 chr22,41209106,41209406,-,AluSx1,SINE,Alu,-15,297,1,41209091,41209406 +5 - chr22 41214153 41214227 chr22,41214153,41214227,-,MER5A,DNA,hAT-Charlie,-5,184,113,41214148,41214339 +6 - chr22 41214464 41214610 chr22,41214464,41214610,-,MIR3,SINE,MIR,-11,197,52,41214453,41214661 +6 - chr22 41214667 41214703 chr22,41214667,41214730,-,MER5B,DNA,hAT-Charlie,0,178,132,41214667,41214861 +2 - chr22 41430984 41431014 chr22,41430984,41431014,+,(TTTA)n,Simple_repeat,Simple_repeat,1,31,0,41430984,41431014 +6 + chr22 41431014 41431214 chr22,41431014,41431214,-,AluJo,SINE,Alu,-112,200,1,41430902,41431214 -6 - chr22 41831215 41831486 chr22,41831185,41831486,-,AluSz,SINE,Alu,-1,311,1,41831184,41831486 +5 - chr22 41831494 41831563 chr22,41831494,41831563,-,L2b,LINE,L2,0,3375,3311,41831494,41834873 +6 - chr22 41831569 41831894 chr22,41831569,41831894,+,L2c,LINE,L2,3017,3384,-3,41828553,41831897 -6 + chr22 41831900 41832006 chr22,41831900,41832006,-,MIR,SINE,MIR,-76,186,70,41831824,41832075 +6 - chr22 41832097 41832225 chr22,41832097,41832225,-,L1M5,LINE,L1,-236,5888,5757,41831861,41837981 +6 - chr22 41832352 41832496 chr22,41832352,41832496,+,MER5B,DNA,hAT-Charlie,18,178,0,41832335,41832496 -6 + chr22 41833036 41833090 chr22,41833036,41833090,+,G-rich,Low_complexity,Low_complexity,1,54,0,41833036,41833090 -6 + chr22 41833357 41833386 chr22,41833357,41833386,+,(GGTG)n,Simple_repeat,Simple_repeat,1,30,0,41833357,41833386 -6 + chr22 41834443 41834470 chr22,41834294,41834470,-,MIRb,SINE,MIR,-28,240,50,41834266,41834519 +4 - chr22 41834464 41834590 chr22,41834464,41834590,-,MIRc,SINE,MIR,-17,251,110,41834447,41834699 +6 - chr22 41922293 41922359 chr22,41922293,41922359,+,MIRc,SINE,MIR,155,222,-46,41922139,41922405 -6 + chr22 41922355 41922421 chr22,41922355,41922421,+,MIR3,SINE,MIR,112,185,-23,41922244,41922444 -6 + chr22 41981304 41981337 chr22,41981153,41981337,+,MER20,DNA,hAT-Charlie,1,217,-2,41981153,41981339 -5 + chr22 41981368 41981555 chr22,41981368,41981559,+,MIR3,SINE,MIR,5,203,-5,41981364,41981564 -2 + chr22 42089633 42089849 chr22,42089633,42089849,-,MIR,SINE,MIR,-6,256,2,42089627,42089850 +6 - chr22 42089931 42090028 chr22,42089931,42090197,+,AluY,SINE,Alu,34,292,-19,42089898,42090216 -1 + chr22 42091573 42091600 chr22,42091573,42091669,-,MIRc,SINE,MIR,-34,196,103,42091539,42091771 -5 - chr22 42092119 42092232 chr22,42092093,42092387,-,AluSx,SINE,Alu,-12,300,2,42092081,42092388 -3 - chr22 42112306 42112390 chr22,42110344,42112737,-,HERVIP10F-int,LTR,ERV1,-3377,4360,1946,42106967,42114682 -3 - chr22 42120036 42120128 chr22,42119796,42120345,-,L2a,LINE,L2,-1373,2046,1438,42118423,42121782 -3 - chr22 42121197 42121350 chr22,42120839,42121350,-,L1ME1,LINE,L1,-151,6028,5450,42120688,42126799 -1 - chr22 42121404 42121541 chr22,42121404,42121541,+,AluJo,SINE,Alu,1,141,-171,42121404,42121712 +6 + chr22 42121555 42121735 chr22,42121555,42121841,+,AluJb,SINE,Alu,1,293,-19,42121555,42121860 +4 + chr22 42122793 42122888 chr22,42122753,42123043,-,AluJo,SINE,Alu,-18,294,3,42122735,42123045 -3 - chr22 42124280 42124319 chr22,42124280,42124319,+,(GGCA)n,Simple_repeat,Simple_repeat,1,41,0,42124280,42124319 +6 + chr22 42132031 42132190 chr22,42132024,42132340,-,AluSq2,SINE,Alu,-4,309,5,42132020,42132344 -1 - chr22 42132370 42132477 chr22,42132340,42132477,-,AluJb,SINE,Alu,-167,145,8,42132173,42132484 -2 - chr22 42132477 42132526 chr22,42132477,42132526,-,L1M4,LINE,L1,-4885,1761,1719,42127592,42134244 -6 - chr22 42133330 42133410 chr22,42133119,42133538,-,L1M4,LINE,L1,-5782,1735,1319,42127337,42134856 -3 - chr22 42135135 42135239 chr22,42135060,42135304,-,L1M4,LINE,L1,-6922,595,335,42128138,42135638 -5 - chr22 42136432 42136471 chr22,42136432,42136471,+,(GGCA)n,Simple_repeat,Simple_repeat,1,41,0,42136432,42136471 +5 + chr22 42136433 42136471 chr22,42136432,42136471,+,(GGCA)n,Simple_repeat,Simple_repeat,1,41,0,42136432,42136471 -5 + chr22 42137563 42137727 chr22,42137563,42137727,-,L2b,LINE,L2,-2,3373,3192,42137561,42140918 -6 - chr22 42139612 42139675 chr22,42138117,42139675,+,LTR12C,LTR,ERV1,3,1579,0,42138115,42139675 -4 + chr22 42273894 42274015 chr22,42273873,42274015,+,LFSINE_Vert,SINE,tRNA,40,182,-277,42273834,42274292 +2 + chr22 42274686 42274862 chr22,42274686,42274862,+,L2b,LINE,L2,3189,3373,-2,42271498,42274864 +5 + chr22 42274988 42275101 chr22,42274882,42275101,-,MIR,SINE,MIR,-24,238,8,42274858,42275108 -5 - chr22 42276355 42276461 chr22,42276245,42276461,-,MIRb,SINE,MIR,-1,267,26,42276244,42276486 -1 - chr22 42278216 42278338 chr22,42278216,42278338,-,MIRc,SINE,MIR,-20,248,112,42278196,42278449 -6 - chr22 42278305 42278381 chr22,42278305,42278381,-,MIR3,SINE,MIR,-68,140,50,42278237,42278430 -6 - chr22 42278679 42278846 chr22,42278679,42278880,-,MIRb,SINE,MIR,-1,267,56,42278678,42278935 -5 - chr22 42364400 42364481 chr22,42364203,42364481,-,UCON33,DNA,TcMar-Tigger,-26,294,11,42364177,42364491 +5 - chr22 42364534 42364561 chr22,42364534,42364561,+,(TTTA)n,Simple_repeat,Simple_repeat,1,28,0,42364534,42364561 -6 + chr22 42501596 42501606 chr22,42501583,42501606,+,(TGAA)n,Simple_repeat,Simple_repeat,1,23,0,42501583,42501606 +1 + chr22 42511841 42511875 chr22,42511841,42511875,+,(CCCTG)n,Simple_repeat,Simple_repeat,1,34,0,42511841,42511875 +6 + chr22 43038638 43038943 chr22,43038638,43038943,+,AluJb,SINE,Alu,2,312,0,43038637,43038943 +6 + chr22 43039053 43039349 chr22,43039053,43039349,+,AluSx,SINE,Alu,2,299,-13,43039052,43039362 +6 + chr22 43213162 43213242 chr22,43213162,43213242,+,L3,LINE,CR1,4014,4099,0,43209149,43213242 +6 + chr22 43232228 43232272 chr22,43232228,43232272,+,(CAGG)n,Simple_repeat,Simple_repeat,1,46,0,43232228,43232272 +6 + chr22 43232272 43232431 chr22,43232272,43232431,+,MIR,SINE,MIR,70,252,-10,43232203,43232441 +6 + chr22 43232418 43232518 chr22,43232418,43232535,-,MIR1_Amn,SINE,MIR,-43,187,66,43232375,43232600 -4 - chr22 43238598 43238629 chr22,43238491,43238629,-,MER103C,DNA,hAT-Charlie,-127,170,27,43238364,43238655 -2 - chr22 43282170 43282210 chr22,43282170,43282210,+,(CACAGG)n,Simple_repeat,Simple_repeat,1,40,0,43282170,43282210 +6 + chr22 43282688 43282995 chr22,43282688,43282995,-,AluSz,SINE,Alu,-5,307,1,43282683,43282995 -6 - chr22 43283160 43283261 chr22,43283160,43283261,+,MIR3,SINE,MIR,92,189,-19,43283069,43283280 +6 + chr22 43283265 43283440 chr22,43283265,43283440,+,MIRb,SINE,MIR,18,207,-55,43283248,43283495 +6 + chr22 43283466 43283592 chr22,43283466,43283592,+,MER94,DNA,hAT-Blackjack,1,123,-11,43283466,43283603 +6 + chr22 43283669 43283829 chr22,43283669,43283829,+,L1MD1,LINE,L1,6079,6242,0,43277591,43283829 +6 + chr22 43402105 43402144 chr22,43401993,43402144,+,MIR3,SINE,MIR,11,201,-7,43401983,43402151 +2 + chr22 43404779 43404878 chr22,43404662,43404878,-,MIRb,SINE,MIR,-7,261,3,43404655,43404880 -2 - chr22 43409086 43409288 chr22,43408963,43409288,-,L1ME4c,LINE,L1,-293,537,451,43408670,43409738 -2 - chr22 43409356 43409415 chr22,43409356,43409415,+,L2a,LINE,L2,3031,3090,-336,43406326,43409751 +6 + chr22 43409553 43409579 chr22,43409553,43409579,+,(CCTT)n,Simple_repeat,Simple_repeat,1,26,0,43409553,43409579 +6 + chr22 43518477 43518597 chr22,43518274,43519444,-,L1MD3,LINE,L1,-13,8480,7242,43518261,43526685 -3 - chr22 43534905 43534941 chr22,43534905,43534941,+,(ATTC)n,Simple_repeat,Simple_repeat,1,37,0,43534905,43534941 +6 + chr22 43536559 43536867 chr22,43536559,43536868,+,AluSz,SINE,Alu,1,312,0,43536559,43536868 +5 + chr22 43812771 43812873 chr22,43812771,43812873,+,L2b,LINE,L2,3269,3375,0,43809503,43812873 +6 + chr22 43812945 43813179 chr22,43812945,43813179,-,MIR,SINE,MIR,-16,246,2,43812929,43813180 -6 - chr22 43813300 43813583 chr22,43813300,43813583,+,L2,LINE,L2,1360,1690,-1729,43811941,43815312 +6 + chr22 43813592 43813955 chr22,43813592,43814060,+,Charlie1b,DNA,hAT-Charlie,3,513,-10,43813590,43814070 +5 + chr22 44102779 44102861 chr22,44102555,44102861,+,AluJb,SINE,Alu,1,293,-19,44102555,44102880 +1 + chr22 44103274 44103532 chr22,44103274,44103532,+,LTR16D,LTR,ERVL,292,646,-5,44102983,44103537 +6 + chr22 44103530 44104035 chr22,44103530,44104035,+,MLT1D,LTR,ERVL-MaLR,10,504,-1,44103521,44104036 +6 + chr22 44104688 44104773 chr22,44104688,44104773,+,L2a,LINE,L2,2944,3032,-394,44101745,44105167 +6 + chr22 44104790 44105367 chr22,44104790,44105367,-,MER77B,LTR,ERVL,-29,671,41,44104761,44105407 -6 - chr22 44105430 44105702 chr22,44105430,44105702,+,L2a,LINE,L2,3107,3418,-8,44102324,44105710 +6 + chr22 44105808 44106131 chr22,44105808,44106131,-,AluSz,SINE,Alu,0,312,1,44105808,44106131 -6 - chr22 44106138 44106165 chr22,44106138,44106165,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,44106138,44106165 +6 + chr22 44106657 44106703 chr22,44106657,44106703,+,(TTCTCTG)n,Simple_repeat,Simple_repeat,1,48,0,44106657,44106703 +6 + chr22 44107396 44107875 chr22,44107396,44107875,+,MER21C,LTR,ERVL,8,554,-384,44107389,44108259 +6 + chr22 44107875 44108176 chr22,44107875,44108176,-,AluSx1,SINE,Alu,-14,298,1,44107861,44108176 -6 - chr22 44108176 44108470 chr22,44108176,44108470,+,MER21C,LTR,ERVL,555,870,-68,44107622,44108538 +6 + chr22 44108470 44108911 chr22,44108470,44108911,-,LTR7Y,LTR,ERV1,0,472,1,44108470,44108911 -6 - chr22 44108911 44108935 chr22,44108911,44108935,+,MER21C,LTR,ERVL,871,895,-43,44108041,44108978 +6 + chr22 44109870 44110142 chr22,44109870,44110142,+,AluYa5,SINE,Alu,40,311,0,44109831,44110142 +6 + chr22 44110168 44110293 chr22,44110168,44110293,-,L2b,LINE,L2,-25,3350,3222,44110143,44113514 -6 - chr22 44110337 44110589 chr22,44110337,44110589,-,L1M4,LINE,L1,-1244,4902,4643,44109093,44115231 -6 - chr22 44110609 44110899 chr22,44110609,44110899,-,AluSz,SINE,Alu,-16,296,1,44110593,44110899 -6 - chr22 44111149 44111222 chr22,44111149,44111222,-,L1M5,LINE,L1,-439,5685,5609,44110710,44116830 -6 - chr22 44111226 44111343 chr22,44111226,44111343,-,MIRc,SINE,MIR,-101,161,47,44111125,44111389 -6 - chr22 44111365 44111426 chr22,44111365,44111426,-,MLT1E1,LTR,ERVL-MaLR,-588,66,5,44110777,44111430 -6 - chr22 44111432 44111746 chr22,44111432,44111746,-,AluJo,SINE,Alu,0,312,2,44111432,44111747 -6 - chr22 44112138 44112165 chr22,44112138,44112165,+,(AAAC)n,Simple_repeat,Simple_repeat,1,28,0,44112138,44112165 +6 + chr22 44112459 44112548 chr22,44112459,44112548,+,L2a,LINE,L2,3048,3139,-287,44109412,44112835 +6 + chr22 44112558 44112654 chr22,44112558,44112654,-,AluJb,SINE,Alu,-31,281,186,44112527,44112839 -6 - chr22 44112661 44112711 chr22,44112661,44112711,-,L1MC2,LINE,L1,-150,6194,6145,44112511,44118855 -6 - chr22 44115954 44116232 chr22,44115954,44116382,-,L1MC3,LINE,L1,-126,7659,7215,44115828,44123596 -5 - chr22 44139365 44139419 chr22,44139199,44139419,-,AluJb,SINE,Alu,-7,305,81,44139192,44139499 -1 - chr22 44139437 44139750 chr22,44139437,44139750,-,AluSq2,SINE,Alu,0,313,1,44139437,44139750 -6 - chr22 44140592 44140730 chr22,44140592,44140730,+,MIRb,SINE,MIR,37,198,-70,44140556,44140800 +6 + chr22 44141226 44141665 chr22,44141226,44141665,-,MLT2A2,LTR,ERVL,0,453,2,44141226,44141666 -6 - chr22 44141791 44141819 chr22,44141791,44141819,+,(TGTT)n,Simple_repeat,Simple_repeat,1,29,0,44141791,44141819 +6 + chr22 44142095 44142407 chr22,44142095,44142407,+,AluSx3,SINE,Alu,1,311,0,44142095,44142407 +6 + chr22 44142967 44143006 chr22,44142967,44143006,+,(CCTTC)n,Simple_repeat,Simple_repeat,1,40,0,44142967,44143006 +6 + chr22 44143018 44143227 chr22,44143018,44143227,+,L2a,LINE,L2,3030,3260,-166,44139989,44143393 +6 + chr22 44144223 44144283 chr22,44144223,44144283,-,MER102c,DNA,hAT-Charlie,0,331,272,44144223,44144554 -6 - chr22 44144325 44144516 chr22,44144325,44144516,-,MER102c,DNA,hAT-Charlie,-59,272,60,44144266,44144575 -6 - chr22 44144516 44144828 chr22,44144516,44144828,+,AluSz6,SINE,Alu,2,312,0,44144515,44144828 +6 + chr22 44145139 44145362 chr22,44145139,44145362,-,MIRb,SINE,MIR,-36,232,1,44145103,44145362 -6 - chr22 44146073 44146461 chr22,44146073,44146461,+,(CACA)n,Simple_repeat,Simple_repeat,1,390,0,44146073,44146461 +6 + chr22 44147063 44147476 chr22,44147063,44147476,-,L2,LINE,L2,-365,3054,2647,44146698,44150122 -6 - chr22 44148045 44148132 chr22,44148045,44148132,+,UCON29,DNA,PiggyBac?,1,82,-357,44148045,44148489 +6 + chr22 44148636 44148822 chr22,44148636,44148822,+,MER103C,DNA,hAT-Charlie,119,297,0,44148518,44148822 +6 + chr22 44149025 44149225 chr22,44149025,44149225,+,MIRb,SINE,MIR,61,256,-12,44148965,44149237 +6 + chr22 44149755 44149855 chr22,44149755,44149855,+,L2b,LINE,L2,3269,3373,-2,44146487,44149857 +6 + chr22 44149873 44150199 chr22,44149873,44150199,+,AluY,SINE,Alu,1,311,0,44149873,44150199 +6 + chr22 44150389 44150654 chr22,44150389,44150654,+,AluSq2,SINE,Alu,1,266,-47,44150389,44150701 +6 + chr22 44150656 44150737 chr22,44150656,44150737,+,tRNA-SeC(e)-TGA,tRNA,tRNA,1,81,-8,44150656,44150745 +6 + chr22 44150740 44151057 chr22,44150740,44151057,+,AluY,SINE,Alu,1,309,-2,44150740,44151059 +6 + chr22 44151715 44152141 chr22,44151715,44152141,-,MLT1C,LTR,ERVL-MaLR,0,467,35,44151715,44152175 -6 - chr22 44152141 44152409 chr22,44152141,44152409,-,AluSc8,SINE,Alu,-4,307,39,44152137,44152447 -6 - chr22 44152409 44152449 chr22,44152409,44152449,-,MLT1C,LTR,ERVL-MaLR,-433,34,1,44151976,44152449 -6 - chr22 44152476 44152609 chr22,44152476,44152609,+,L2c,LINE,L2,3009,3134,-241,44149468,44152850 +6 + chr22 44152885 44153035 chr22,44152885,44153035,-,L1ME4a,LINE,L1,0,6124,5957,44152885,44158991 -6 - chr22 44153318 44153617 chr22,44153318,44153617,-,AluSx3,SINE,Alu,-2,309,12,44153316,44153628 -6 - chr22 44183649 44183853 chr22,44183649,44183853,-,MIR,SINE,MIR,-9,259,32,44183640,44183884 +6 - chr22 44184333 44184639 chr22,44184333,44184639,-,AluSx1,SINE,Alu,-8,304,1,44184325,44184639 +6 - chr22 44184990 44185038 chr22,44184990,44185038,+,(ATTC)n,Simple_repeat,Simple_repeat,1,48,0,44184990,44185038 -6 + chr22 44185210 44185325 chr22,44185210,44185325,+,MIR3,SINE,MIR,85,208,0,44185126,44185325 -6 + chr22 44185528 44185615 chr22,44185528,44185615,-,MER53,DNA,hAT,0,193,107,44185528,44185721 +6 - chr22 44186051 44186279 chr22,44186051,44186279,-,MIRb,SINE,MIR,-7,261,3,44186044,44186281 +6 - chr22 44186520 44186556 chr22,44186520,44186556,+,(CCAT)n,Simple_repeat,Simple_repeat,1,37,0,44186520,44186556 -6 + chr22 44186659 44186898 chr22,44186659,44186898,-,LTR16C,LTR,ERVL,-1,488,210,44186658,44187107 +6 - chr22 44187083 44187328 chr22,44187083,44187328,-,MLT1C,LTR,ERVL-MaLR,-1,466,216,44187082,44187543 +6 - chr22 44187327 44187526 chr22,44187327,44187526,-,MLT1C-int,LTR,ERVL-MaLR,-1042,329,1,44186285,44187526 +6 - chr22 44187571 44187739 chr22,44187571,44187740,-,L2b,LINE,L2,-160,3215,3034,44187411,44190773 +1 - chr22 44210442 44210566 chr22,44210047,44210566,-,MLT1D,LTR,ERVL-MaLR,0,505,1,44210047,44210566 +5 - chr22 44210566 44210699 chr22,44210566,44210699,-,L1ME1,LINE,L1,-4293,2107,1926,44206273,44212624 +6 - chr22 44210699 44210993 chr22,44210699,44210993,-,AluJr,SINE,Alu,-18,294,1,44210681,44210993 +6 - chr22 44210993 44211169 chr22,44210993,44211169,-,L1ME1,LINE,L1,-4475,1925,1744,44206518,44212912 +6 - chr22 44211324 44211595 chr22,44211324,44211595,-,L1MB3,LINE,L1,0,6183,5943,44211324,44217537 +6 - chr22 44213140 44213376 chr22,44213140,44213376,+,MIRb,SINE,MIR,4,254,-14,44213137,44213390 -6 + chr22 44213395 44214056 chr22,44213395,44214056,+,(TCA)n,Simple_repeat,Simple_repeat,1,672,0,44213395,44214056 -6 + chr22 44214527 44214765 chr22,44214527,44214765,+,MIRc,SINE,MIR,13,247,-21,44214515,44214786 -6 + chr22 44214813 44215145 chr22,44214813,44215145,+,MLT1J2,LTR,ERVL-MaLR,3,375,-73,44214811,44215218 -6 + chr22 44215214 44215898 chr22,44215214,44215898,-,L1ME1,LINE,L1,-6081,1195,509,44209133,44216406 +6 - chr22 44215906 44216201 chr22,44215906,44216201,-,AluSx1,SINE,Alu,-15,297,1,44215891,44216201 +6 - chr22 44216422 44216487 chr22,44216422,44216487,+,(ACAT)n,Simple_repeat,Simple_repeat,1,69,0,44216422,44216487 -6 + chr22 44216799 44216873 chr22,44216799,44216873,+,MER2B,DNA,TcMar-Tigger,1,75,-261,44216799,44217134 -6 + chr22 44216873 44217173 chr22,44216873,44217173,+,AluSz,SINE,Alu,1,309,-3,44216873,44217176 -6 + chr22 44217178 44217370 chr22,44217178,44217370,+,MER2,DNA,TcMar-Tigger,153,345,0,44217026,44217370 -6 + chr22 44217682 44217987 chr22,44217682,44217987,-,AluJr,SINE,Alu,-5,307,1,44217677,44217987 +6 - chr22 44217987 44218101 chr22,44217987,44218101,+,L3,LINE,CR1,3893,4022,-77,44214095,44218178 -6 + chr22 44218705 44218799 chr22,44218705,44218799,+,Arthur1B,DNA,hAT-Tip100,1,100,-1125,44218705,44219924 -6 + chr22 44218799 44219049 chr22,44218799,44219049,-,AluSx1,SINE,Alu,-63,249,1,44218736,44219049 +6 - chr22 44219049 44219093 chr22,44219049,44219093,+,Arthur1B,DNA,hAT-Tip100,101,146,-1079,44218949,44220172 -6 + chr22 44219477 44219807 chr22,44219477,44219807,-,MLT1G,LTR,ERVL-MaLR,-2,589,245,44219475,44220051 +6 - chr22 44219886 44220091 chr22,44219886,44220091,-,MSTC,LTR,ERVL-MaLR,-150,278,98,44219736,44220188 +6 - chr22 44220091 44220399 chr22,44220091,44220399,-,AluSx1,SINE,Alu,-5,307,1,44220086,44220399 +6 - chr22 44220399 44220439 chr22,44220399,44220439,-,MSTC,LTR,ERVL-MaLR,-331,97,82,44220068,44220520 +6 - chr22 44220439 44220677 chr22,44220439,44220677,+,AluSp,SINE,Alu,57,293,-20,44220383,44220697 -6 + chr22 44220677 44220758 chr22,44220677,44220758,-,MSTC,LTR,ERVL-MaLR,-347,81,1,44220330,44220758 +6 - chr22 44221711 44222149 chr22,44221711,44222149,-,MLT1C,LTR,ERVL-MaLR,-14,453,6,44221697,44222154 +6 - chr22 44222396 44222836 chr22,44222396,44222836,-,MSTC,LTR,ERVL-MaLR,0,428,2,44222396,44222837 +6 - chr22 44223076 44223388 chr22,44223076,44223388,-,AluSz,SINE,Alu,0,312,1,44223076,44223388 +6 - chr22 44223691 44223799 chr22,44223691,44223799,+,L2a,LINE,L2,3315,3425,-1,44220377,44223800 -6 + chr22 44223765 44223894 chr22,44223765,44223894,+,L3,LINE,CR1,3859,3997,-102,44219907,44223996 -6 + chr22 44223994 44224081 chr22,44223994,44224081,+,MIR3,SINE,MIR,66,148,-60,44223929,44224141 -6 + chr22 44224600 44224859 chr22,44224600,44224859,-,AluJr,SINE,Alu,-2,310,14,44224598,44224872 +6 - chr22 44224946 44225207 chr22,44224946,44225207,-,AluSx,SINE,Alu,-47,265,1,44224899,44225207 +6 - chr22 44225211 44226449 chr22,44225211,44226449,+,L2a,LINE,L2,1852,3190,-236,44223360,44226685 -6 + chr22 44226458 44226938 chr22,44226458,44226938,-,MER63D,DNA,hAT-Blackjack,-568,493,1,44225890,44226938 +6 - chr22 44227371 44227869 chr22,44227371,44227869,-,MLT1G1,LTR,ERVL-MaLR,0,595,16,44227371,44227884 +6 - chr22 44228006 44228249 chr22,44228006,44228249,+,MER63D,DNA,hAT-Blackjack,785,1021,-40,44227222,44228289 -6 + chr22 44228327 44228672 chr22,44228327,44228672,-,L1ME3G,LINE,L1,-553,371,12,44227774,44228683 +6 - chr22 44228713 44229173 chr22,44228713,44229173,-,L1MEg,LINE,L1,-941,5205,4726,44227772,44233898 +6 - chr22 44365845 44366284 chr22,44365734,44366343,+,LTR36,LTR,ERV1,3,609,-2,44365732,44366345 +5 + chr22 44444442 44444509 chr22,44444442,44444509,+,MIRb,SINE,MIR,35,103,-165,44444408,44444674 +6 + chr22 44444589 44444696 chr22,44444589,44444696,-,L2b,LINE,L2,-34,3341,3225,44444555,44447920 -6 - chr22 44444705 44444760 chr22,44444705,44444760,-,L2a,LINE,L2,-3,3423,3369,44444702,44448128 -6 - chr22 44444771 44444788 chr22,44444771,44444969,-,MIR,SINE,MIR,-23,239,35,44444748,44445003 -5 - chr22 44486301 44486333 chr22,44486301,44486333,+,(GTG)n,Simple_repeat,Simple_repeat,1,32,0,44486301,44486333 -6 + chr22 44569339 44569441 chr22,44568659,44569500,+,L1ME2,LINE,L1,5313,6145,-19,44563347,44569519 +1 + chr22 44569597 44569663 chr22,44569511,44570274,-,HAL1,LINE,L1,-1667,840,2,44567844,44570275 -1 - chr22 44570051 44570132 chr22,44569511,44570274,-,HAL1,LINE,L1,-1667,840,2,44567844,44570275 -1 - chr22 44571376 44571421 chr22,44571372,44571421,-,MIR3,SINE,MIR,-56,152,104,44571316,44571524 -2 - chr22 45000881 45001096 chr22,45000881,45001096,-,MIRc,SINE,MIR,-29,239,10,45000852,45001105 +6 - chr22 45002967 45003136 chr22,45002967,45003136,+,L2c,LINE,L2,3135,3334,-53,44999833,45003189 -6 + chr22 45003491 45003619 chr22,45003491,45003702,-,L2,LINE,L2,-431,2988,2751,45003060,45006452 +1 - chr22 45133079 45133384 chr22,45133079,45133384,-,AluSx1,SINE,Alu,-9,303,1,45133070,45133384 +6 - chr22 45133423 45133733 chr22,45133423,45133733,+,AluSx1,SINE,Alu,1,310,-2,45133423,45133735 -6 + chr22 45133813 45133957 chr22,45133813,45133957,-,MIRb,SINE,MIR,-15,253,114,45133798,45134070 +6 - chr22 45134378 45134797 chr22,45134378,45134855,-,MLT1J,LTR,ERVL-MaLR,-2,510,1,45134376,45134855 +2 - chr22 45138824 45138916 chr22,45138801,45138936,+,FLAM_C,SINE,Alu,1,133,-10,45138801,45138946 -3 + chr22 45152405 45152586 chr22,45152337,45152642,+,MLT1D,LTR,ERVL-MaLR,1,331,-174,45152337,45152816 -1 + chr22 45155539 45155624 chr22,45155496,45155624,-,MLT1B,LTR,ERVL-MaLR,0,390,245,45155496,45155868 +5 - chr22 45155643 45155748 chr22,45155643,45155748,-,MLT1B,LTR,ERVL-MaLR,-257,117,1,45155386,45155748 +6 - chr22 45178990 45179142 chr22,45178952,45179142,+,MIRb,SINE,MIR,22,219,-49,45178931,45179191 +1 + chr22 45262273 45263284 chr22,45261670,45263284,-,MER52D,LTR,ERV1,0,2123,1,45261670,45263284 +5 - chr22 45263505 45263585 chr22,45263505,45263653,-,MIRc,SINE,MIR,-88,180,9,45263417,45263661 +1 - chr22 45448371 45448451 chr22,45448322,45448451,+,MIRb,SINE,MIR,125,261,-7,45448198,45448458 -4 + chr22 45657019 45657701 chr22,45655825,45657701,+,MER57-int,LTR,ERV1,5654,7537,0,45650172,45657701 +1 + chr22 45657703 45658078 chr22,45657703,45658078,+,MER57B1,LTR,ERV1,8,401,0,45657696,45658078 +6 + chr22 45658086 45659104 chr22,45658086,45659104,-,L1ME1,LINE,L1,-1307,4839,3697,45656779,45662800 -6 - chr22 45659104 45659402 chr22,45659104,45659402,-,AluSg4,SINE,Alu,-12,298,1,45659092,45659402 -6 - chr22 45659402 45659798 chr22,45659402,45659798,-,L1ME1,LINE,L1,-2450,3696,3343,45656952,45663140 -6 - chr22 45659798 45660111 chr22,45659798,45660111,-,AluSz,SINE,Alu,0,312,1,45659798,45660111 -6 - chr22 45660112 45660416 chr22,45660112,45660416,-,AluJo,SINE,Alu,-18,294,1,45660094,45660416 -6 - chr22 45660418 45660717 chr22,45660418,45660717,-,AluSx1,SINE,Alu,-9,303,2,45660409,45660718 -6 - chr22 45660717 45660797 chr22,45660717,45660797,-,L1MEa,LINE,L1,-66,2513,2431,45660651,45663227 -6 - chr22 45660797 45661106 chr22,45660797,45661106,-,AluJb,SINE,Alu,-3,309,1,45660794,45661106 -6 - chr22 45661106 45662071 chr22,45661106,45662071,-,L1MEa,LINE,L1,-149,2430,1072,45660957,45663142 -6 - chr22 45662089 45662186 chr22,45662089,45662186,-,AluSz6,SINE,Alu,-218,94,1,45661871,45662186 -6 - chr22 45662186 45662667 chr22,45662186,45662667,-,L1MEa,LINE,L1,-5225,911,432,45656961,45663098 -6 - chr22 45662667 45663086 chr22,45662667,45663086,-,MSTC,LTR,ERVL-MaLR,0,428,1,45662667,45663086 -6 - chr22 45663086 45663471 chr22,45663086,45663471,-,L1MEa,LINE,L1,-5705,431,67,45657381,45663537 -6 - chr22 45663628 45663695 chr22,45663628,45663695,+,LTR84a,LTR,ERVL,541,609,-152,45663088,45663847 +6 + chr22 45663978 45664781 chr22,45663978,45664781,-,L1ME1,LINE,L1,-4423,1819,903,45659555,45665683 -6 - chr22 45664781 45665079 chr22,45664781,45665079,-,AluSx3,SINE,Alu,-13,298,1,45664768,45665079 -6 - chr22 45665079 45665368 chr22,45665079,45665368,-,L1ME1,LINE,L1,-5340,902,603,45659739,45665970 -6 - chr22 45666197 45666417 chr22,45666197,45666417,-,MIR,SINE,MIR,-10,252,17,45666187,45666433 -6 - chr22 45666417 45666640 chr22,45666417,45666640,-,MER58A,DNA,hAT-Charlie,0,224,1,45666417,45666640 -6 - chr22 45666699 45666995 chr22,45666699,45666995,-,L2c,LINE,L2,-5,3382,3041,45666694,45670035 -6 - chr22 45667040 45667339 chr22,45667040,45667339,-,AluY,SINE,Alu,-11,300,1,45667029,45667339 -6 - chr22 45667446 45667503 chr22,45667446,45667503,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,57,0,45667446,45667503 +6 + chr22 45667946 45667978 chr22,45667946,45667978,+,(AT)n,Simple_repeat,Simple_repeat,1,32,0,45667946,45667978 +6 + chr22 45667981 45668294 chr22,45667981,45668294,-,AluSx1,SINE,Alu,-14,298,1,45667967,45668294 -6 - chr22 45668323 45668724 chr22,45668323,45668724,-,L2a,LINE,L2,-1,3425,3019,45668322,45671742 -6 - chr22 45668761 45668895 chr22,45668761,45668895,+,LTR56,LTR,ERV1,9,141,-304,45668753,45669199 +6 + chr22 45668895 45669188 chr22,45668895,45669188,-,AluJr,SINE,Alu,-23,289,1,45668872,45669188 -6 - chr22 45669188 45669497 chr22,45669188,45669497,+,LTR56,LTR,ERV1,142,445,0,45669047,45669497 +6 + chr22 45669519 45669808 chr22,45669519,45669808,-,L2a,LINE,L2,-410,3009,2706,45669109,45672513 -6 - chr22 45669877 45670170 chr22,45669877,45670170,-,AluSz6,SINE,Alu,-11,301,1,45669866,45670170 -6 - chr22 45670311 45670359 chr22,45670311,45670359,+,L2c,LINE,L2,3335,3387,0,45666977,45670359 +6 + chr22 45670438 45670608 chr22,45670438,45670608,-,AluJb,SINE,Alu,0,312,140,45670438,45670747 -6 - chr22 45670755 45670924 chr22,45670755,45670924,+,L2c,LINE,L2,3191,3378,-9,45667565,45670933 +6 + chr22 45671884 45671933 chr22,45671884,45671933,+,(CGG)n,Simple_repeat,Simple_repeat,1,51,0,45671884,45671933 +6 + chr22 45671954 45672036 chr22,45671954,45672036,+,(CCT)n,Simple_repeat,Simple_repeat,1,82,0,45671954,45672036 +6 + chr22 45672759 45672952 chr22,45672759,45672952,+,MIRb,SINE,MIR,3,210,-58,45672757,45673010 +6 + chr22 45673004 45673153 chr22,45673004,45673153,+,MIRb,SINE,MIR,118,267,-1,45672887,45673154 +6 + chr22 45673152 45673237 chr22,45673152,45673237,-,L2a,LINE,L2,-6,3420,3321,45673146,45676557 -6 - chr22 45673551 45673678 chr22,45673551,45673678,-,L2b,LINE,L2,-7,3380,3258,45673544,45676935 -6 - chr22 45674007 45674307 chr22,45674007,45674307,-,L2b,LINE,L2,-559,2860,2542,45673448,45676848 -6 - chr22 45674397 45674489 chr22,45674397,45674489,+,MIR3,SINE,MIR,9,103,-105,45674389,45674594 +6 + chr22 45674912 45675097 chr22,45674912,45675097,+,MIRb,SINE,MIR,10,244,-24,45674903,45675121 +6 + chr22 45675212 45675303 chr22,45675212,45675303,-,L3b,LINE,CR1,-113,5119,5016,45675099,45680318 -6 - chr22 45675303 45675783 chr22,45675303,45675783,+,MLT1F1,LTR,ERVL-MaLR,1,569,0,45675303,45675783 +6 + chr22 45675783 45675820 chr22,45675783,45675820,-,L3b,LINE,CR1,-217,5015,4979,45675566,45680798 -6 - chr22 45676110 45676162 chr22,45676110,45676162,-,AluJo,SINE,Alu,-12,300,249,45676098,45676410 -6 - chr22 45676165 45676291 chr22,45676165,45676291,-,AluJr,SINE,Alu,-186,126,2,45675979,45676292 -6 - chr22 45676374 45676473 chr22,45676374,45676473,-,MER3,DNA,hAT-Charlie,0,209,103,45676374,45676575 -6 - chr22 45676473 45676778 chr22,45676473,45676778,-,AluSp,SINE,Alu,-7,306,1,45676466,45676778 -6 - chr22 45676789 45676997 chr22,45676789,45676997,-,AluJo,SINE,Alu,-22,290,85,45676767,45677081 -6 - chr22 45676997 45677081 chr22,45676997,45677081,-,MER3,DNA,hAT-Charlie,-96,113,15,45676901,45677095 -6 - chr22 45677216 45677290 chr22,45677216,45677290,+,L2c,LINE,L2,3274,3353,-34,45673943,45677324 +6 + chr22 45677521 45677975 chr22,45677521,45677975,+,L1MB4,LINE,L1,5188,5662,-518,45672334,45678493 +6 + chr22 45677975 45678261 chr22,45677975,45678261,+,L1MB4,LINE,L1,5893,6180,0,45672083,45678261 +6 + chr22 45678273 45678360 chr22,45678273,45678360,+,L1MB8,LINE,L1,6093,6177,-1,45672181,45678361 +6 + chr22 45678361 45678447 chr22,45678361,45678447,+,L1M5,LINE,L1,5428,5516,-648,45672934,45679095 +6 + chr22 45678546 45678673 chr22,45678546,45678673,+,L2c,LINE,L2,3251,3387,0,45675296,45678673 +6 + chr22 45679016 45679271 chr22,45679016,45679271,+,L2c,LINE,L2,3099,3375,-12,45675918,45679283 +6 + chr22 45875932 45875971 chr22,45875222,45875971,+,L1M4,LINE,L1,3889,4692,-1454,45871334,45877425 +1 + chr22 45875987 45876283 chr22,45875987,45876283,-,AluSp,SINE,Alu,-15,298,2,45875972,45876284 -5 - chr22 45875999 45876283 chr22,45875987,45876283,-,AluSp,SINE,Alu,-15,298,2,45875972,45876284 +5 - chr22 45877193 45877250 chr22,45877193,45877250,+,MIRb,SINE,MIR,142,197,-71,45877052,45877321 +6 + chr22 45878041 45878226 chr22,45878041,45878226,+,MIRb,SINE,MIR,68,260,-8,45877974,45878234 +6 + chr22 45878718 45878796 chr22,45878718,45878796,+,MER129,LTR?,LTR?,169,249,-220,45878550,45879016 +6 + chr22 46006794 46006926 chr22,46006794,46006926,-,MIR3,SINE,MIR,-116,152,18,46006678,46006943 -6 - chr22 46007720 46007758 chr22,46007720,46007758,+,(CTGAGG)n,Simple_repeat,Simple_repeat,1,38,0,46007720,46007758 +6 + chr22 46007888 46007917 chr22,46007888,46007917,+,(GGGCA)n,Simple_repeat,Simple_repeat,1,31,0,46007888,46007917 +6 + chr22 46008540 46008668 chr22,46008540,46008668,+,MIRb,SINE,MIR,4,130,-138,46008537,46008806 +6 + chr22 46008668 46008683 chr22,46008668,46008683,-,AluJo,SINE,Alu,-12,300,286,46008656,46008968 -6 - chr22 46008683 46008712 chr22,46008683,46008712,+,(TG)n,Simple_repeat,Simple_repeat,1,29,0,46008683,46008712 +6 + chr22 46008712 46009004 chr22,46008712,46009004,-,AluJo,SINE,Alu,-27,285,1,46008685,46009004 -6 - chr22 46009004 46009064 chr22,46009004,46009064,+,MIRb,SINE,MIR,131,189,-79,46008874,46009143 +6 + chr22 46009635 46010183 chr22,46009635,46010183,+,MLT1G,LTR,ERVL-MaLR,1,591,0,46009635,46010183 +6 + chr22 46010482 46010560 chr22,46010482,46010560,+,MIR3,SINE,MIR,108,188,-20,46010375,46010580 +6 + chr22 46010537 46010747 chr22,46010537,46010747,+,L2b,LINE,L2,3183,3375,0,46007355,46010747 +6 + chr22 46010756 46010777 chr22,46010756,46010791,+,(AATG)n,Simple_repeat,Simple_repeat,1,35,0,46010756,46010791 +5 + chr22 46014497 46014749 chr22,46014422,46014749,-,AluSz,SINE,Alu,0,312,2,46014422,46014750 -2 - chr22 46015394 46015496 chr22,46015394,46015496,-,L1M5,LINE,L1,-777,5465,5360,46014617,46020855 -6 - chr22 46040085 46040132 chr22,46040085,46040132,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,46040085,46040132 -6 + chr22 46040263 46040289 chr22,46040263,46040289,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,46040263,46040289 -5 + chr22 46041413 46041559 chr22,46041413,46041559,+,L1ME4a,LINE,L1,5975,6124,0,46035439,46041559 -6 + chr22 46041859 46042089 chr22,46041859,46042089,-,AluJb,SINE,Alu,-83,229,1,46041776,46042089 +6 - chr22 46042212 46042531 chr22,46042212,46042531,+,AluSc,SINE,Alu,2,309,0,46042211,46042531 -6 + chr22 46042613 46042786 chr22,46042613,46042786,-,MER45A,DNA,hAT-Tip100,0,178,1,46042613,46042786 +6 - chr22 46043260 46043368 chr22,46043260,46043368,+,MER33,DNA,hAT-Charlie,111,226,-98,46043150,46043466 -6 + chr22 46044826 46044853 chr22,46044826,46044875,+,(GGC)n,Simple_repeat,Simple_repeat,1,51,0,46044826,46044875 -1 + chr22 46053862 46053914 chr22,46053862,46053914,+,G-rich,Low_complexity,Low_complexity,1,52,0,46053862,46053914 +1 + chr22 46055666 46055733 chr22,46055666,46055851,-,MER33,DNA,hAT-Charlie,-22,302,118,46055644,46055968 -5 - chr22 46055740 46055851 chr22,46055666,46055851,-,MER33,DNA,hAT-Charlie,-22,302,118,46055644,46055968 +5 - chr22 46111119 46111217 chr22,46111119,46111217,+,MIRb,SINE,MIR,95,194,-74,46111025,46111291 +6 + chr22 46111357 46111666 chr22,46111357,46111666,+,AluY,SINE,Alu,1,309,-2,46111357,46111668 +5 + chr22 46111670 46111805 chr22,46111670,46111805,+,MIR3,SINE,MIR,31,173,-89,46111640,46111894 +6 + chr22 46112572 46112625 chr22,46112572,46112625,+,(GCGCCCT)n,Simple_repeat,Simple_repeat,1,53,0,46112572,46112625 +6 + chr22 46112957 46113034 chr22,46112957,46113034,+,MIRc,SINE,MIR,72,153,-115,46112886,46113149 +6 + chr22 46113424 46113536 chr22,46113424,46113536,-,MIR1_Amn,SINE,MIR,-27,203,84,46113397,46113619 -6 - chr22 46113561 46113607 chr22,46113561,46113607,+,(CTGCC)n,Simple_repeat,Simple_repeat,1,50,0,46113561,46113607 +6 + chr22 46163933 46164220 chr22,46163933,46164220,+,AluSq2,SINE,Alu,1,295,-18,46163933,46164238 +6 + chr22 46164255 46164552 chr22,46164255,46164552,-,AluSq2,SINE,Alu,-16,297,1,46164239,46164552 -6 - chr22 46164554 46164700 chr22,46164554,46164700,+,L2a,LINE,L2,3259,3406,-20,46161296,46164720 +6 + chr22 46165024 46165336 chr22,46165024,46165336,-,AluSx1,SINE,Alu,-1,311,1,46165023,46165336 -6 - chr22 46295143 46295495 chr22,46295095,46295495,-,MSTB,LTR,ERVL-MaLR,0,426,1,46295095,46295495 +5 - chr22 46295707 46295895 chr22,46295707,46295895,-,L2b,LINE,L2,-24,3351,3155,46295683,46299049 +6 - chr22 46296084 46296120 chr22,46296084,46296120,-,MIRb,SINE,MIR,-72,196,156,46296012,46296275 +6 - chr22 46548109 46548190 chr22,46548109,46548190,+,MIRb,SINE,MIR,81,166,-102,46548029,46548292 +6 + chr22 46761894 46762079 chr22,46761855,46762079,-,MER33,DNA,hAT-Charlie,-67,257,25,46761788,46762103 +5 - chr22 47259366 47259422 chr22,47259062,47259422,+,(AC)n,Simple_repeat,Simple_repeat,1,361,0,47259062,47259422 +1 + chr22 47259502 47259620 chr22,47259502,47259620,-,MER5B,DNA,hAT-Charlie,-2,176,52,47259500,47259671 -6 - chr22 47259619 47259873 chr22,47259619,47259873,+,L2c,LINE,L2,3070,3340,-47,47256550,47259920 +6 + chr22 47260944 47261007 chr22,47260944,47261113,+,MER112,DNA,hAT-Charlie,16,194,-67,47260929,47261180 +5 + chr22 47345569 47345724 chr22,47345473,47345751,-,MLT1C,LTR,ERVL-MaLR,-17,450,134,47345456,47345884 -1 - chr22 47363592 47363709 chr22,47363574,47363887,-,AluSz,SINE,Alu,-20,292,3,47363554,47363889 -3 - chr22 47369627 47369757 chr22,47369627,47369757,-,MIRb,SINE,MIR,-71,197,63,47369556,47369819 -6 - chr22 47371333 47371524 chr22,47371333,47371524,-,MER63A,DNA,hAT-Blackjack,-5,205,8,47371328,47371531 -6 - chr22 47373198 47373240 chr22,47373198,47373240,+,(CACCCAG)n,Simple_repeat,Simple_repeat,1,42,0,47373198,47373240 +6 + chr22 47461299 47461365 chr22,47461211,47461365,+,MER63B,DNA,hAT-Blackjack,281,436,0,47460931,47461365 -5 + chr22 47461525 47461656 chr22,47461525,47461656,-,MIRc,SINE,MIR,-98,170,38,47461427,47461693 +6 - chr22 47622528 47622952 chr22,47622528,47622962,+,MLT1D,LTR,ERVL-MaLR,1,497,-8,47622528,47622970 -2 + chr22 47627162 47627231 chr22,47627131,47627231,+,MLT1K,LTR,ERVL-MaLR,444,547,-48,47626688,47627279 -4 + chr22 47630167 47630203 chr22,47630167,47630203,+,GA-rich,Low_complexity,Low_complexity,1,36,0,47630167,47630203 -6 + chr22 47630516 47630740 chr22,47630516,47630740,+,MLT1J,LTR,ERVL-MaLR,227,461,-51,47630290,47630791 -6 + chr22 47631674 47631805 chr22,47631336,47631805,-,MLT2B1,LTR,ERVL,0,520,21,47631336,47631825 -1 - chr22 47631336 47631569 chr22,47631336,47631805,-,MLT2B1,LTR,ERVL,0,520,21,47631336,47631825 +1 - chr22 47631857 47631886 chr22,47631857,47631938,+,(CGTGAG)n,Simple_repeat,Simple_repeat,1,85,0,47631857,47631938 +4 + chr22 47635180 47635429 chr22,47635022,47635429,+,MLT2D,LTR,ERVL,1,412,-2,47635022,47635431 +2 + chr22 47854911 47854931 chr22,47853819,47854931,+,L2a,LINE,L2,1813,3041,-378,47852007,47855309 +2 + chr22 47854931 47855265 chr22,47854931,47855265,+,MLT1A,LTR,ERVL-MaLR,1,357,-17,47854931,47855282 +6 + chr22 47855342 47855589 chr22,47855342,47855589,+,L2a,LINE,L2,3155,3422,-4,47852188,47855593 +6 + chr22 47860671 47860717 chr22,47860426,47860717,-,AluSp,SINE,Alu,-20,293,1,47860406,47860717 -1 - chr22 47916728 47916955 chr22,47916524,47916955,-,MLT2A1,LTR,ERVL,-40,515,2,47916484,47916956 -1 - chr22 47918064 47918432 chr22,47918064,47918432,+,MLT1F,LTR,ERVL-MaLR,145,554,-6,47917920,47918438 +6 + chr22 47920400 47920525 chr22,47920400,47920525,+,MIR,SINE,MIR,77,186,-76,47920324,47920601 +6 + chr22 47922519 47922658 chr22,47922519,47922658,+,MIRb,SINE,MIR,4,139,-129,47922516,47922787 +6 + chr22 47922677 47922925 chr22,47922677,47922925,+,MER46C,DNA,TcMar-Tigger,1,226,-112,47922677,47923037 +6 + chr22 47923205 47923277 chr22,47923205,47923277,+,G-rich,Low_complexity,Low_complexity,1,75,0,47923205,47923277 +6 + chr22 47924148 47924679 chr22,47924148,47924679,-,MLT1F2,LTR,ERVL-MaLR,-14,546,5,47924134,47924683 -6 - chr22 47925370 47925407 chr22,47925370,47925407,-,L2c,LINE,L2,-377,3010,2974,47924993,47928380 -6 - chr22 47925543 47925765 chr22,47925543,47925765,-,MIR,SINE,MIR,-10,252,21,47925533,47925785 -6 - chr22 47926095 47926169 chr22,47926095,47926169,-,LTR8,LTR,ERV1,-1,690,620,47926094,47926788 -6 - chr22 47926169 47926264 chr22,47926169,47926537,-,THE1B,LTR,ERVL-MaLR,0,364,1,47926169,47926537 -5 - chr22 47944720 47944755 chr22,47944720,47944755,+,(AATG)n,Simple_repeat,Simple_repeat,1,36,0,47944720,47944755 +6 + chr22 47944914 47945146 chr22,47944914,47945344,+,MLT1F2,LTR,ERVL-MaLR,73,560,0,47944842,47945344 +5 + chr22 48044876 48045001 chr22,48044876,48045063,+,MIR3,SINE,MIR,11,196,-12,48044866,48045075 -2 + chr22 48053259 48053294 chr22,48053259,48053294,+,(TTA)n,Simple_repeat,Simple_repeat,1,35,0,48053259,48053294 +6 + chr22 48053294 48053598 chr22,48053294,48053598,-,AluSq2,SINE,Alu,-30,283,1,48053264,48053598 -6 - chr22 48054211 48054306 chr22,48054211,48054306,+,L2a,LINE,L2,3330,3426,0,48050882,48054306 +6 + chr22 48055153 48055803 chr22,48055153,48055803,+,(TG)n,Simple_repeat,Simple_repeat,1,652,0,48055153,48055803 +6 + chr22 48056536 48056730 chr22,48056536,48056730,-,MIRb,SINE,MIR,-21,247,38,48056515,48056767 -6 - chr22 48056818 48057125 chr22,48056818,48057125,-,L2c,LINE,L2,-2,3385,3085,48056816,48060209 -6 - chr22 48058060 48058100 chr22,48058060,48058100,+,(TGAGT)n,Simple_repeat,Simple_repeat,1,43,0,48058060,48058100 +6 + chr22 48139461 48139638 chr22,48139447,48139638,-,MIRb,SINE,MIR,-14,254,46,48139433,48139683 +5 - chr22 48140783 48140836 chr22,48140783,48140836,+,MIRc,SINE,MIR,54,106,-162,48140730,48140998 -6 + chr22 48142989 48143192 chr22,48142880,48143192,+,MLT1L,LTR,ERVL-MaLR,25,414,-196,48142856,48143388 +2 + chr22 48449082 48449150 chr22,48449082,48449150,+,MIR3,SINE,MIR,54,124,-84,48449029,48449234 +6 + chr22 48451140 48451217 chr22,48451140,48451454,+,AluSq,SINE,Alu,1,313,0,48451140,48451454 +5 + chr22 48897435 48897499 chr22,48897435,48897499,+,MER31A,LTR,ERV1,400,467,-18,48897036,48897517 +6 + chr22 49264344 49264640 chr22,49264344,49264640,-,MER89-int,LTR,ERV1,-5045,1756,1486,49259299,49266125 -6 - chr22 49264890 49265256 chr22,49264890,49265256,-,MER89-int,LTR,ERV1,-5556,1245,870,49259334,49266125 -6 - chr22 49414540 49414833 chr22,49414540,49414833,-,AluJb,SINE,Alu,-19,293,1,49414521,49414833 +6 - chr22 49425322 49425437 chr22,49425157,49425597,-,MER1A,DNA,hAT-Charlie,0,529,1,49425157,49425597 +1 - chr22 49440876 49441166 chr22,49440579,49441166,-,L1ME3A,LINE,L1,-61,6112,5484,49440518,49446649 +4 - chr22 49500568 49500609 chr22,49500455,49500609,-,MLT2B2,LTR,ERVL,-26,541,393,49500429,49501001 -1 - chr22 49500624 49501478 chr22,49500624,49501478,+,(ATCACC)n,Simple_repeat,Simple_repeat,1,878,0,49500624,49501478 +6 + chr22 49501522 49501585 chr22,49501522,49501741,-,MER20,DNA,hAT-Charlie,0,219,1,49501522,49501741 -5 - chr22 49553376 49553456 chr22,49553376,49553456,+,MIRc,SINE,MIR,64,146,-122,49553313,49553578 +6 + chr22 49555160 49555500 chr22,49555160,49555500,+,MLT1C,LTR,ERVL-MaLR,2,341,-126,49555159,49555626 +6 + chr22 49555609 49555764 chr22,49555609,49555764,+,MLT1C,LTR,ERVL-MaLR,296,461,-6,49555314,49555770 +6 + chr22 49556047 49556198 chr22,49556047,49556198,-,L1MEc,LINE,L1,-1973,4346,4204,49554074,49560401 -6 - chr22 49556198 49556473 chr22,49556198,49556496,+,AluSc,SINE,Alu,5,302,-7,49556194,49556503 +5 + chr22 49572264 49572310 chr22,49572142,49572310,+,L1ME4b,LINE,L1,64,241,-651,49572079,49572961 -5 + chr22 49572469 49572810 chr22,49572469,49572810,+,MLT2D,LTR,ERVL,1,358,-56,49572469,49572866 -6 + chr22 49572821 49573174 chr22,49572821,49573174,+,(GATG)n,Simple_repeat,Simple_repeat,1,354,0,49572821,49573174 -6 + chr22 49573721 49574017 chr22,49573721,49574017,+,AluSz,SINE,Alu,1,297,-15,49573721,49574032 -6 + chr22 49612657 49612982 chr22,49612345,49612982,-,L1ME4a,LINE,L1,-992,5151,4374,49611353,49617355 +5 - chr22 49613686 49613770 chr22,49613686,49613770,+,MamRep38,DNA,hAT,209,292,-3,49613478,49613773 -6 + chr22 49613837 49613857 chr22,49613837,49613857,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,49613837,49613857 -6 + chr22 49614638 49614781 chr22,49614638,49614781,+,L1ME4a,LINE,L1,5978,6118,-6,49608661,49614787 -6 + chr22 49619642 49619782 chr22,49619637,49619782,-,L1MA8,LINE,L1,-1,6311,6164,49619636,49625945 +5 - chr22 49619802 49620269 chr22,49619802,49620269,+,MER87B,LTR,ERV1,4,501,-8,49619799,49620277 -6 + chr22 49620315 49620635 chr22,49620315,49620635,-,L1MA8,LINE,L1,-184,6116,5745,49620131,49626379 +5 - chr22 49623428 49623495 chr22,49623428,49623495,+,LTR16A,LTR,ERVL,230,298,-153,49623199,49623648 -6 + chr22 49657329 49657542 chr22,49657329,49657700,-,MSTA,LTR,ERVL-MaLR,-7,421,1,49657322,49657700 +1 - chr22 49718390 49718419 chr22,49718390,49718419,+,(TTC)n,Simple_repeat,Simple_repeat,1,30,0,49718390,49718419 -6 + chr22 49718494 49718985 chr22,49718494,49718985,-,MLT1H,LTR,ERVL-MaLR,0,549,42,49718494,49719026 +6 - chr22 49719696 49719996 chr22,49719696,49719996,+,AluY,SINE,Alu,1,300,-11,49719696,49720007 -6 + chr22 49720730 49720831 chr22,49720730,49720884,+,L1MB3,LINE,L1,6027,6183,0,49714704,49720884 -2 + chr22 49723743 49723911 chr22,49723743,49723911,+,FAM,SINE,Alu,1,168,-17,49723743,49723928 -6 + chr22 49723911 49723937 chr22,49723911,49723937,+,(TA)n,Simple_repeat,Simple_repeat,1,26,0,49723911,49723937 -6 + chr22 49723985 49724419 chr22,49723985,49724419,+,MLT1C,LTR,ERVL-MaLR,54,455,-12,49723932,49724431 -6 + chr22 49805739 49806040 chr22,49805739,49806040,-,AluSx1,SINE,Alu,-10,302,1,49805729,49806040 -6 - chr22 49806040 49806168 chr22,49806040,49806168,-,AluSz6,SINE,Alu,-166,146,1,49805874,49806168 -6 - chr22 49806334 49806418 chr22,49806334,49806418,+,AluYd8,SINE,Alu,100,177,-122,49806235,49806540 +6 + chr22 49806716 49807017 chr22,49806716,49807017,+,AluSq2,SINE,Alu,2,302,-11,49806715,49807028 +6 + chr22 49807162 49807208 chr22,49807162,49808710,+,L1MB3,LINE,L1,4524,6179,-4,49802639,49808714 +5 + chr22 49832616 49832679 chr22,49832398,49832679,+,L1ME3F,LINE,L1,5665,5922,-321,49826734,49833000 -5 + chr22 49832717 49832765 chr22,49832717,49832765,+,(AC)n,Simple_repeat,Simple_repeat,1,48,0,49832717,49832765 -6 + chr22 49832791 49832867 chr22,49832791,49832867,-,L1MC4a,LINE,L1,-1283,6599,6527,49831508,49839393 +6 - chr22 49833197 49833687 chr22,49833197,49833974,+,LTR37-int,LTR,ERV1,3283,4059,-1,49829915,49833975 -2 + chr22 49837292 49837786 chr22,49837154,49837881,+,L1MB8,LINE,L1,5308,6114,-64,49831847,49837945 -1 + chr22 49852055 49852364 chr22,49852055,49852364,+,AluSc,SINE,Alu,1,309,0,49852055,49852364 +6 + chr22 49852443 49852505 chr22,49852443,49852505,-,MER58B,DNA,hAT-Charlie,-127,214,165,49852316,49852669 -6 - chr22 49852505 49852800 chr22,49852505,49852800,-,AluSx1,SINE,Alu,-20,292,1,49852485,49852800 -6 - chr22 49852800 49852929 chr22,49852800,49852929,-,MER58B,DNA,hAT-Charlie,-177,164,29,49852623,49852957 -6 - chr22 49853225 49853261 chr22,49853225,49853261,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,37,0,49853225,49853261 +6 + chr22 49902228 49902261 chr22,49901448,49902261,+,(GT)n,Simple_repeat,Simple_repeat,1,832,0,49901448,49902261 +1 + chr22 49902261 49902310 chr22,49902261,49902310,+,(TGTGTGCA)n,Simple_repeat,Simple_repeat,1,49,0,49902261,49902310 +6 + chr22 49902310 49903017 chr22,49902310,49903017,+,(GT)n,Simple_repeat,Simple_repeat,1,714,0,49902310,49903017 +6 + chr22 49933204 49933439 chr22,49933204,49933439,-,ERV3-16A3_I-int,LTR,ERVL,-3617,1609,1392,49929587,49934830 +6 - chr22 50092892 50093200 chr22,50092892,50093200,-,AluY,SINE,Alu,0,311,1,50092892,50093200 -6 - chr22 50093509 50093810 chr22,50093509,50093810,-,AluJr,SINE,Alu,-13,299,1,50093496,50093810 -6 - chr22 50094028 50094376 chr22,50094028,50094376,-,L1M4,LINE,L1,-1411,4735,4357,50092617,50098732 -6 - chr22 50094399 50094696 chr22,50094399,50094696,-,AluY,SINE,Alu,-12,299,2,50094387,50094697 -6 - chr22 50094877 50094942 chr22,50094877,50094942,-,MER3,DNA,hAT-Charlie,-8,201,133,50094869,50095074 -6 - chr22 50094942 50095049 chr22,50094942,50095049,+,FLAM_A,SINE,Alu,1,130,-12,50094942,50095061 +6 + chr22 50095049 50095147 chr22,50095049,50095147,-,MER3,DNA,hAT-Charlie,-77,132,29,50094972,50095175 -6 - chr22 50095663 50095739 chr22,50095663,50095739,-,Kanga11a,DNA,TcMar-Tc2,-890,80,5,50094773,50095743 -6 - chr22 50095803 50095934 chr22,50095803,50095934,-,L1M4,LINE,L1,-2145,4001,3859,50093658,50099792 -6 - chr22 50096042 50096437 chr22,50096042,50097124,-,L1MB5,LINE,L1,-9,6165,5001,50096033,50102124 -5 - chr22 50191740 50192062 chr22,50191740,50192062,-,AluSx,SINE,Alu,-1,311,1,50191739,50192062 +6 - chr22 50205585 50205632 chr22,50205579,50205632,+,L1MB1,LINE,L1,6135,6183,0,50199445,50205632 -5 + chr22 50206017 50206062 chr22,50206017,50206099,-,X9_LINE,LINE,L1,-112,824,749,50205905,50206847 +1 - chr22 50209522 50209542 chr22,50209522,50209650,+,MIR1_Amn,SINE,MIR,70,197,-71,50209453,50209721 -1 + chr22 50524647 50524680 chr22,50524647,50524680,+,(CCTGCA)n,Simple_repeat,Simple_repeat,1,35,0,50524647,50524680 +6 + chr22 50542305 50542481 chr22,50542169,50542481,+,MER57F,LTR,ERV1,119,434,-1,50542051,50542482 -5 + chr22 50542687 50542775 chr22,50542687,50542775,-,L2,LINE,L2,-1234,2185,2096,50541453,50544870 -6 - chr22 50542687 50542775 chr22,50542687,50542775,-,L2,LINE,L2,-1234,2185,2096,50541453,50544870 +6 - chr22 50547623 50547652 chr22,50547623,50548078,+,(GCCCCA)n,Simple_repeat,Simple_repeat,1,457,0,50547623,50548078 +5 + chr22 50583192 50583234 chr22,50583192,50583234,+,(CGG)n,Simple_repeat,Simple_repeat,1,44,0,50583192,50583234 +6 + chr22 50583742 50583877 chr22,50583742,50584084,+,ERVL-E-int,LTR,ERVL,1450,1763,-3463,50582293,50587547 +5 + chr22 50597419 50597547 chr22,50597419,50597547,-,MIRc,SINE,MIR,-121,147,13,50597298,50597559 -6 - chr22 50674424 50674453 chr22,50674424,50674453,+,(GCC)n,Simple_repeat,Simple_repeat,1,30,0,50674424,50674453 +6 + chr22 50697699 50697715 chr22,50697699,50697796,+,G-rich,Low_complexity,Low_complexity,1,93,0,50697699,50697796 +4 + chr22 50720830 50720887 chr22,50720830,50720887,+,(GGCCCG)n,Simple_repeat,Simple_repeat,1,58,0,50720830,50720887 +6 + chr22 50730872 50730913 chr22,50730872,50730913,+,G-rich,Low_complexity,Low_complexity,1,42,0,50730872,50730913 +6 + chr22 50731012 50731089 chr22,50731012,50731089,+,(CGCCGT)n,Simple_repeat,Simple_repeat,1,79,0,50731012,50731089 +6 + chr22 50731312 50731390 chr22,50731312,50731390,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,78,0,50731312,50731390 +6 + chr22 50732777 50732801 chr22,50732777,50732801,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,50732777,50732801 +6 + chr22 50733144 50733207 chr22,50733144,50733207,+,(TTA)n,Simple_repeat,Simple_repeat,1,64,0,50733144,50733207 +6 + chr22 50736108 50736404 chr22,50736108,50736404,-,AluSq2,SINE,Alu,-10,303,3,50736098,50736406 +6 - chr22 50736671 50736747 chr22,50736671,50736747,+,LTR107_Mam,LTR,LTR,210,289,-281,50736462,50737028 -6 + chr22 50737641 50737817 chr22,50737641,50737817,+,LTR107_Mam,LTR,LTR,221,399,-171,50737421,50737988 -6 + chr3 23757 23812 chr3,23629,23827,-,LTR33,LTR,ERVL,-304,211,10,23325,23836 -1 - chr3 24086 24369 chr3,24086,24369,-,MLT1N2,LTR,ERVL-MaLR,-254,308,23,23832,24391 -6 - chr3 54293 54346 chr3,54192,54678,+,Tigger7,DNA,TcMar-Tigger,1,513,-1978,54192,56656 -1 + chr3 373817 374052 chr3,367661,374053,-,L1PA6,LINE,L1,0,6446,2,367661,374054 +1 - chr3 385703 385795 chr3,385547,385845,+,AluSx4,SINE,Alu,1,298,-12,385547,385857 -1 + chr3 536231 536320 chr3,535186,536320,-,LTR12D,LTR,ERV1,0,1254,1,535186,536320 -1 - chr3 827007 827133 chr3,825967,829365,+,L1MA1,LINE,L1,7,3488,-4077,825961,833442 +3 + chr3 842376 842389 chr3,842142,842389,-,L1ME2,LINE,L1,-652,5512,5269,841490,847657 -2 - chr3 842389 842732 chr3,842389,842732,+,Tigger2a,DNA,TcMar-Tigger,2,333,-101,842388,842833 +5 + chr3 842732 843008 chr3,842732,843008,+,AluJo,SINE,Alu,2,286,-26,842731,843034 +6 + chr3 843008 843149 chr3,843008,843149,+,Tigger2a,DNA,TcMar-Tigger,334,434,0,842675,843149 +6 + chr3 843149 843533 chr3,843149,843533,-,L1ME2,LINE,L1,-878,5268,4867,842271,848399 -6 - chr3 845409 845700 chr3,845409,845700,-,L1PA10,LINE,L1,0,6168,5858,845409,851557 -6 - chr3 857901 857953 chr3,857901,857953,+,MLT2D,LTR,ERVL,377,430,-130,857525,858083 +6 + chr3 858007 858091 chr3,858007,858112,+,D20S16,Satellite,Satellite,1,106,-1,858007,858113 +5 + chr3 858070 858091 chr3,858070,858419,+,MLT2B4,LTR,ERVL,277,433,-123,857794,858542 +5 + chr3 1009906 1009933 chr3,1009906,1009933,+,(TATATC)n,Simple_repeat,Simple_repeat,1,27,0,1009906,1009933 +6 + chr3 1010775 1010933 chr3,1010775,1010933,+,AluYc,SINE,Alu,135,290,-9,1010641,1010942 +6 + chr3 1011744 1011906 chr3,1011744,1011906,+,MER103C,DNA,hAT-Charlie,23,194,-103,1011722,1012009 +6 + chr3 1011997 1012203 chr3,1011997,1012203,+,MIRc,SINE,MIR,20,267,-1,1011978,1012204 +6 + chr3 1012654 1012934 chr3,1012654,1012962,+,AluJr,SINE,Alu,6,310,-2,1012649,1012964 +5 + chr3 1987400 1987470 chr3,1987400,1987702,+,AluY,SINE,Alu,1,303,-8,1987400,1987710 -1 + chr3 2132361 2132441 chr3,2131925,2132441,+,MLT1H1,LTR,ERVL-MaLR,16,553,-2,2131910,2132443 -4 + chr3 3039508 3039573 chr3,3039508,3039573,-,LFSINE_Vert,SINE,tRNA,-14,445,377,3039494,3039949 +6 - chr3 3260807 3260862 chr3,3260651,3260862,-,MamRTE1,LINE,RTE-BovB,-673,3139,2908,3259978,3263769 +5 - chr3 3315306 3315458 chr3,3315278,3315458,-,MER113,DNA,hAT-Charlie,-273,248,46,3315005,3315503 +5 - chr3 3315530 3315601 chr3,3315530,3315601,-,MIR3,SINE,MIR,-62,146,77,3315468,3315677 +6 - chr3 3337300 3337452 chr3,3337268,3337452,-,MER5A,DNA,hAT-Charlie,-5,184,2,3337263,3337453 +4 - chr3 3337452 3337463 chr3,3337452,3337545,+,LTR78,LTR,ERV1,1209,1304,0,3336244,3337545 -2 + chr3 3440908 3441005 chr3,3440457,3441241,+,L1MB3,LINE,L1,5150,5953,-230,3435308,3441471 -3 + chr3 3626744 3626849 chr3,3626621,3626883,+,AluJo,SINE,Alu,51,309,-3,3626571,3626886 -3 + chr3 4815086 4815121 chr3,4815086,4815121,+,(TCTTGT)n,Simple_repeat,Simple_repeat,1,35,0,4815086,4815121 -6 + chr3 4816173 4816276 chr3,4816016,4816449,-,L1MC4,LINE,L1,-144,7898,7387,4815872,4823835 +1 - chr3 4817433 4817551 chr3,4816688,4817654,-,L1MC4,LINE,L1,-656,7386,6341,4816032,4823994 +3 - chr3 4856636 4856755 chr3,4856557,4857001,-,MLT1D,LTR,ERVL-MaLR,0,505,1,4856557,4857001 +1 - chr3 4887229 4887293 chr3,4886955,4887375,+,L2b,LINE,L2,2918,3375,0,4884038,4887375 -1 + chr3 4896823 4897320 chr3,4896823,4897320,-,L1ME3A,LINE,L1,-14,6159,5618,4896809,4902937 +6 - chr3 4897432 4897727 chr3,4897432,4897727,+,AluSx3,SINE,Alu,1,293,-18,4897432,4897745 -6 + chr3 4897736 4898029 chr3,4897736,4898029,+,AluSg4,SINE,Alu,1,305,-5,4897736,4898034 -6 + chr3 4898029 4898064 chr3,4898029,4898064,+,GA-rich,Low_complexity,Low_complexity,1,35,0,4898029,4898064 -6 + chr3 4900595 4900658 chr3,4900595,4900658,-,MER58B,DNA,hAT-Charlie,0,341,279,4900595,4900936 +6 - chr3 4900674 4900697 chr3,4900674,4900754,-,MER58B,DNA,hAT-Charlie,-219,122,31,4900455,4900784 +2 - chr3 4949559 4949612 chr3,4949446,4949612,+,L2c,LINE,L2,3205,3386,-1,4946242,4949613 -4 + chr3 5156967 5157023 chr3,5156967,5157972,-,L1MD2,LINE,L1,-5545,1095,117,5151422,5158088 +2 - chr3 5157762 5157851 chr3,5156967,5157972,-,L1MD2,LINE,L1,-5545,1095,117,5151422,5158088 +3 - chr3 5187464 5187520 chr3,5187464,5187520,+,G-rich,Low_complexity,Low_complexity,1,56,0,5187464,5187520 -6 + chr3 5187563 5187644 chr3,5187563,5187644,+,G-rich,Low_complexity,Low_complexity,1,85,0,5187563,5187644 -6 + chr3 5255535 5255701 chr3,5255091,5255701,-,MLT1E2,LTR,ERVL-MaLR,-2,625,10,5255089,5255710 +5 - chr3 5255716 5255815 chr3,5255716,5255847,+,AluJb,SINE,Alu,182,311,-1,5255535,5255848 -2 + chr3 5256703 5256761 chr3,5256703,5257011,+,MLT1B,LTR,ERVL-MaLR,2,327,-63,5256702,5257074 -1 + chr3 6148484 6148578 chr3,6147284,6150079,-,L1MD1,LINE,L1,-2243,4294,18,6145041,6150096 -1 - chr3 6358901 6358931 chr3,6358801,6358931,+,MLT1N2,LTR,ERVL-MaLR,415,548,-14,6358387,6358945 +2 + chr3 6490479 6490672 chr3,6484911,6490929,-,L1PA2,LINE,L1,-2,6153,127,6484909,6491055 -1 - chr3 6490734 6490929 chr3,6484911,6490929,-,L1PA2,LINE,L1,-2,6153,127,6484909,6491055 -1 - chr3 6490931 6490946 chr3,6490931,6491787,-,L1MEg,LINE,L1,-5111,1131,308,6485820,6492094 -4 - chr3 6507781 6507944 chr3,6507654,6507944,-,AluYi6,SINE,Alu,-19,292,1,6507635,6507944 -1 - chr3 6557790 6557959 chr3,6557790,6558387,+,Tigger3b,DNA,TcMar-Tigger,1,616,-615,6557790,6559002 +5 + chr3 6578045 6578137 chr3,6577703,6578255,+,MLT2B2,LTR,ERVL,1,555,0,6577703,6578255 +3 + chr3 6583747 6584090 chr3,6583747,6585282,-,L1MCa,LINE,L1,-1146,5175,3614,6582601,6588895 -5 - chr3 6631689 6631826 chr3,6631231,6631826,+,MER39,LTR,ERV1,1,707,0,6631231,6631826 -5 + chr3 6632100 6632130 chr3,6632100,6632130,+,(AAT)n,Simple_repeat,Simple_repeat,1,30,0,6632100,6632130 -6 + chr3 6644839 6644894 chr3,6644570,6644962,+,MLT1A,LTR,ERVL-MaLR,1,374,0,6644570,6644962 -1 + chr3 6664829 6664943 chr3,6664744,6665243,+,MER70C,LTR,ERVL,5,531,0,6664740,6665243 -1 + chr3 6717569 6717667 chr3,6717382,6717733,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,6717382,6717733 +3 + chr3 6721328 6721455 chr3,6721328,6721455,-,LTR75_1,LTR,ERV1,-74,472,354,6721254,6721808 +6 - chr3 6731190 6731255 chr3,6731190,6731255,+,L3b,LINE,CR1,4856,4919,-313,6726335,6731568 -6 + chr3 6732313 6732338 chr3,6732313,6732338,+,(TGAA)n,Simple_repeat,Simple_repeat,1,25,0,6732313,6732338 +6 + chr3 6736072 6736129 chr3,6736072,6736523,-,MER4A1,LTR,ERV1,0,472,2,6736072,6736524 -5 - chr3 6739538 6739586 chr3,6739287,6739772,+,LTR16A2,LTR,ERVL,1,494,-1,6739287,6739773 -5 + chr3 6805389 6805399 chr3,6805335,6805399,+,MLT1J2,LTR,ERVL-MaLR,375,442,-2,6804961,6805401 -4 + chr3 6892980 6893016 chr3,6892980,6893016,+,(TGA)n,Simple_repeat,Simple_repeat,1,36,0,6892980,6893016 -6 + chr3 6893029 6893048 chr3,6893029,6893218,-,MIRb,SINE,MIR,-10,252,45,6893019,6893262 +2 - chr3 7519741 7519883 chr3,7519714,7519883,-,MLT1G1,LTR,ERVL-MaLR,-41,538,353,7519673,7520235 +5 - chr3 7519883 7519912 chr3,7519883,7519912,+,(GCTGGCT)n,Simple_repeat,Simple_repeat,1,29,0,7519883,7519912 -6 + chr3 7519912 7520015 chr3,7519912,7520222,-,MLT1G1,LTR,ERVL-MaLR,-227,352,33,7519685,7520254 +5 - chr3 7520138 7520222 chr3,7519912,7520222,-,MLT1G1,LTR,ERVL-MaLR,-227,352,33,7519685,7520254 +5 - chr3 7606890 7606955 chr3,7606833,7606955,-,MER92-int,LTR,ERV1,-3227,1991,1868,7603606,7608822 +5 - chr3 7606989 7607094 chr3,7606989,7607094,-,MER92-int,LTR,ERV1,-2178,1882,1777,7604811,7608870 +6 - chr3 7607308 7607402 chr3,7607308,7607402,+,Charlie1,DNA,hAT-Charlie,2655,2752,-29,7604654,7607431 -6 + chr3 7607438 7607468 chr3,7607438,7607468,+,(AAACA)n,Simple_repeat,Simple_repeat,1,30,0,7607438,7607468 -6 + chr3 7607487 7607724 chr3,7607487,7607724,-,MER92-int,LTR,ERV1,-2370,1690,1453,7605117,7609176 +6 - chr3 7607729 7607897 chr3,7607729,7609118,-,L1PA14,LINE,L1,0,6161,4750,7607729,7613867 +1 - chr3 7952805 7953384 chr3,7952760,7953384,-,MLT2B5,LTR,ERVL,-1,716,1,7952759,7953384 +5 - chr3 7953703 7953811 chr3,7953703,7953811,+,MIRb,SINE,MIR,101,214,-54,7953603,7953865 -6 + chr3 7954275 7954525 chr3,7954275,7954525,-,MIR,SINE,MIR,-7,255,5,7954268,7954529 +6 - chr3 7954511 7954598 chr3,7954511,7954598,-,L2c,LINE,L2,-26,3361,3274,7954485,7957871 +6 - chr3 8015877 8016307 chr3,8015801,8017531,-,MER61-int,LTR,ERV1,0,5217,3456,8015801,8020986 +1 - chr3 8089487 8089552 chr3,8089273,8089636,+,THE1B,LTR,ERVL-MaLR,1,364,0,8089273,8089636 +3 + chr3 8091334 8091377 chr3,8091334,8091377,+,L2a,LINE,L2,3378,3417,-9,8087957,8091386 +6 + chr3 8091383 8091428 chr3,8091383,8091428,+,MIR3,SINE,MIR,109,152,-56,8091275,8091484 +6 + chr3 8107112 8107205 chr3,8106867,8107308,+,MLT2B1,LTR,ERVL,65,520,0,8106803,8107308 +3 + chr3 8194249 8195073 chr3,8192124,8197892,-,L1MA3,LINE,L1,-1765,5797,16,8190359,8197907 +5 - chr3 8221147 8221412 chr3,8220116,8221412,-,Tigger3b,DNA,TcMar-Tigger,0,1231,1,8220116,8221412 +5 - chr3 8221412 8221579 chr3,8221412,8221579,+,MLT1F1,LTR,ERVL-MaLR,19,186,-383,8221394,8221962 -6 + chr3 8221579 8221820 chr3,8221579,8221820,-,AluSx1,SINE,Alu,-76,236,1,8221503,8221820 +6 - chr3 8221820 8222141 chr3,8221820,8222141,+,MLT1F1,LTR,ERVL-MaLR,187,569,0,8221634,8222141 -6 + chr3 8222661 8222719 chr3,8222661,8222858,-,L2b,LINE,L2,-3,3372,3172,8222658,8226029 +2 - chr3 8364707 8364761 chr3,8364683,8364761,+,(TCCA)n,Simple_repeat,Simple_repeat,1,80,0,8364683,8364761 -5 + chr3 8494681 8494766 chr3,8494506,8494818,-,LTR33,LTR,ERVL,-143,372,5,8494363,8494822 +3 - chr3 8498524 8498624 chr3,8498524,8498624,+,L2b,LINE,L2,3276,3375,0,8495249,8498624 -5 + chr3 8571835 8572889 chr3,8571835,8572889,-,L1MC4,LINE,L1,-151,7891,6803,8571684,8579691 -6 - chr3 8573254 8573419 chr3,8573254,8573419,-,L1MA8,LINE,L1,-6,6285,6113,8573248,8579531 -6 - chr3 8573816 8573875 chr3,8573816,8573887,-,MLT1K,LTR,ERVL-MaLR,-2,593,524,8573814,8574410 -5 - chr3 8573816 8573874 chr3,8573816,8573887,-,MLT1K,LTR,ERVL-MaLR,-2,593,524,8573814,8574410 +5 - chr3 8592713 8592978 chr3,8592669,8592978,-,AluJo,SINE,Alu,0,312,1,8592669,8592978 +4 - chr3 8611264 8611359 chr3,8611264,8611488,+,MIR,SINE,MIR,33,262,0,8611232,8611488 -2 + chr3 8611524 8611639 chr3,8611524,8617535,+,L1PA3,LINE,L1,124,6154,-1,8611401,8617536 -1 + chr3 8611858 8611924 chr3,8611524,8617535,+,L1PA3,LINE,L1,124,6154,-1,8611401,8617536 -1 + chr3 9014123 9014194 chr3,9013910,9014194,+,MLT1K,LTR,ERVL-MaLR,85,403,-192,9013826,9014386 +1 + chr3 9014230 9014291 chr3,9014230,9014342,+,MLT1K,LTR,ERVL-MaLR,474,595,0,9013757,9014342 +4 + chr3 9015891 9015979 chr3,9015891,9017717,-,L1MC4,LINE,L1,-3,8039,6705,9015888,9024421 -5 - chr3 9192493 9192754 chr3,9192123,9192754,+,MER77,LTR,ERVL,1,604,0,9192123,9192754 +1 + chr3 9192754 9192995 chr3,9192754,9193216,-,L2b,LINE,L2,-480,2939,2476,9192274,9195691 -4 - chr3 9194246 9194452 chr3,9194246,9194452,+,MIRb,SINE,MIR,46,268,0,9194201,9194452 +5 + chr3 9216895 9216989 chr3,9216732,9217194,+,L1MB3,LINE,L1,5715,6183,0,9211018,9217194 +1 + chr3 9217731 9217768 chr3,9217638,9217768,-,Charlie18a,DNA,hAT-Charlie,-179,163,19,9217459,9217786 -2 - chr3 9217989 9218087 chr3,9217989,9218173,+,L3b,LINE,CR1,3489,3645,-454,9214501,9218627 +5 + chr3 9256915 9256988 chr3,9256915,9256988,+,MIRb,SINE,MIR,23,107,-161,9256893,9257149 +6 + chr3 9257373 9257507 chr3,9257171,9257538,+,MLT1A,LTR,ERVL-MaLR,1,363,-11,9257171,9257549 +5 + chr3 9292588 9292860 chr3,9292474,9292860,-,Charlie19a,DNA,hAT-Charlie,0,386,3,9292474,9292862 +5 - chr3 9326010 9326168 chr3,9324969,9326753,-,MER57-int,LTR,ERV1,-394,7143,5307,9324575,9332059 +3 - chr3 9337602 9337677 chr3,9337391,9337761,+,MSTD,LTR,ERVL-MaLR,1,396,0,9337391,9337761 -5 + chr3 9355772 9355859 chr3,9355739,9356116,-,MSTD,LTR,ERVL-MaLR,-11,417,1,9355728,9356116 +5 - chr3 9362840 9362878 chr3,9362687,9362878,+,MIRb,SINE,MIR,83,259,-9,9362605,9362887 -4 + chr3 9388087 9388127 chr3,9387933,9388164,+,AluSx,SINE,Alu,1,236,-76,9387933,9388240 -3 + chr3 9388849 9389051 chr3,9388793,9389051,+,MER2,DNA,TcMar-Tigger,1,302,-43,9388793,9389094 -5 + chr3 9389106 9389514 chr3,9389106,9389514,-,Charlie1,DNA,hAT-Charlie,-1524,1257,853,9387582,9390366 +5 - chr3 9389514 9389817 chr3,9389514,9389817,+,AluJr,SINE,Alu,1,300,-12,9389514,9389829 -5 + chr3 9389817 9390441 chr3,9389817,9390441,-,Charlie1,DNA,hAT-Charlie,-1929,852,57,9387888,9390497 +5 - chr3 9390467 9390619 chr3,9390467,9390637,-,L2c,LINE,L2,-67,3320,3118,9390400,9393754 +1 - chr3 9391312 9391557 chr3,9391256,9391557,-,AluSz,SINE,Alu,0,312,1,9391256,9391557 +5 - chr3 9391557 9391826 chr3,9391557,9391833,-,Tigger1,DNA,TcMar-Tigger,-444,1974,1697,9391113,9393529 +5 - chr3 9394460 9394527 chr3,9394460,9394527,-,Charlie5,DNA,hAT-Charlie,-2517,107,42,9391943,9394568 +6 - chr3 9395059 9395281 chr3,9395059,9395281,-,MER30,DNA,hAT-Charlie,0,230,1,9395059,9395281 +6 - chr3 9812762 9812898 chr3,9812754,9812898,+,L2b,LINE,L2,3231,3375,-51,9809524,9812949 -5 + chr3 9935706 9935947 chr3,9935005,9935947,-,L2a,LINE,L2,0,3375,2301,9935005,9938247 -1 - chr3 9936125 9936224 chr3,9936125,9936224,+,MIRc,SINE,MIR,107,204,-64,9936019,9936288 +6 + chr3 9948073 9948180 chr3,9948073,9948210,+,MIRb,SINE,MIR,101,268,0,9947973,9948210 +4 + chr3 9948355 9948469 chr3,9948329,9948507,-,AluJb,SINE,Alu,-10,302,120,9948319,9948626 -3 - chr3 9954604 9954787 chr3,9954440,9954920,-,L3,LINE,CR1,-308,3791,3245,9954132,9958164 -5 - chr3 9958717 9958782 chr3,9958615,9958782,-,L1MB8,LINE,L1,-347,5831,5679,9958268,9964460 -1 - chr3 9958782 9959004 chr3,9958782,9959004,-,AluYc,SINE,Alu,-11,288,4,9958771,9959007 -6 - chr3 9959004 9959017 chr3,9959004,9959017,-,L1MB8,LINE,L1,-500,5678,5671,9958504,9964687 -6 - chr3 9959017 9959317 chr3,9959017,9959317,-,AluSg,SINE,Alu,-10,300,1,9959007,9959317 -6 - chr3 9959317 9959429 chr3,9959317,9959429,-,L1MB8,LINE,L1,-508,5670,5562,9958809,9964990 -6 - chr3 9959435 9959564 chr3,9959435,9959564,-,MIR3,SINE,MIR,-71,137,2,9959364,9959565 -6 - chr3 9959703 9959765 chr3,9959703,9959765,+,L2b,LINE,L2,2896,2952,-467,9956808,9960232 +6 + chr3 9959765 9959832 chr3,9959765,9959832,-,L1MB8,LINE,L1,-9,6169,6103,9959756,9965934 -6 - chr3 9959832 9960115 chr3,9959832,9960115,+,L2b,LINE,L2,2951,3231,-144,9956882,9960259 +6 + chr3 9960118 9960346 chr3,9960118,9960346,-,AluY,SINE,Alu,-6,305,80,9960112,9960425 -6 - chr3 9960353 9960431 chr3,9960353,9960431,+,L2b,LINE,L2,3289,3382,-5,9957065,9960436 +6 + chr3 9960583 9960689 chr3,9960583,9960689,+,MLT1K,LTR,ERVL-MaLR,19,129,-466,9960565,9961155 +6 + chr3 9960831 9960993 chr3,9960831,9960993,+,MLT1K,LTR,ERVL-MaLR,406,587,-8,9960426,9961001 +6 + chr3 9961186 9961391 chr3,9961186,9961391,+,MER30,DNA,hAT-Charlie,1,230,0,9961186,9961391 +6 + chr3 9961665 9961880 chr3,9961665,9961880,-,AluSq,SINE,Alu,-16,297,83,9961649,9961962 -6 - chr3 9962099 9962198 chr3,9962099,9962198,+,L2c,LINE,L2,3036,3153,-234,9959064,9962432 +6 + chr3 9962394 9962527 chr3,9962394,9962527,+,FLAM_C,SINE,Alu,1,133,-10,9962394,9962537 +6 + chr3 10006442 10006537 chr3,10006442,10006537,-,L1MA7,LINE,L1,0,6291,6173,10006442,10012709 +5 - chr3 10006535 10006797 chr3,10006535,10006797,+,L1MA7,LINE,L1,5893,6149,-142,10000643,10006939 -6 + chr3 10008574 10008652 chr3,10008574,10008675,-,MIRb,SINE,MIR,-96,172,72,10008478,10008746 +2 - chr3 10010150 10010402 chr3,10010150,10010419,+,AluY,SINE,Alu,1,295,-16,10010150,10010435 -2 + chr3 10284497 10284605 chr3,10284497,10284605,-,MER5A1,DNA,hAT-Charlie,-35,131,16,10284462,10284620 -6 - chr3 10285403 10285515 chr3,10285403,10285515,+,(TCTTCC)n,Simple_repeat,Simple_repeat,1,119,0,10285403,10285515 +6 + chr3 10292102 10292296 chr3,10292102,10292296,-,MIR3,SINE,MIR,-2,206,5,10292100,10292300 -6 - chr3 10566397 10566471 chr3,10566397,10566529,-,MER20B,DNA,hAT-Charlie,-69,714,581,10566328,10567109 +2 - chr3 10570121 10570137 chr3,10570034,10570137,+,MLT1N2,LTR,ERVL-MaLR,7,105,-457,10570028,10570594 -4 + chr3 10570174 10570316 chr3,10570174,10570316,+,MIR3,SINE,MIR,52,207,-1,10570123,10570317 -6 + chr3 10570312 10570375 chr3,10570312,10570450,-,MamTip2,DNA,hAT-Tip100,-162,143,5,10570150,10570454 +1 - chr3 10626021 10626153 chr3,10625784,10626153,+,MER113,DNA,hAT-Charlie,148,520,-1,10625637,10626154 -5 + chr3 10626153 10626306 chr3,10626153,10626306,-,MIR3,SINE,MIR,-47,161,6,10626106,10626311 +6 - chr3 10626766 10626807 chr3,10626757,10626861,-,MamTip2,DNA,hAT-Tip100,-91,214,96,10626666,10626956 +1 - chr3 10759492 10759756 chr3,10759492,10759756,+,MIR,SINE,MIR,8,247,-21,10759485,10759777 -6 + chr3 10759766 10759821 chr3,10759766,10759821,-,MER5B,DNA,hAT-Charlie,-6,172,119,10759760,10759939 +6 - chr3 10759864 10759982 chr3,10759864,10759982,+,MIR3,SINE,MIR,23,186,-82,10759842,10760064 -6 + chr3 10760338 10760519 chr3,10760338,10760519,-,MER117,DNA,hAT-Charlie,-10,187,6,10760328,10760524 +6 - chr3 10760691 10760957 chr3,10760691,10760957,+,MIRb,SINE,MIR,3,268,0,10760689,10760957 -6 + chr3 10762839 10762922 chr3,10762839,10762955,+,MIRb,SINE,MIR,58,194,-74,10762782,10763029 -2 + chr3 10763366 10763497 chr3,10763366,10763550,+,MIRc,SINE,MIR,24,242,-26,10763343,10763576 -2 + chr3 10767464 10767482 chr3,10767328,10767482,-,LTR86B2,LTR,ERVL,-295,192,41,10767033,10767522 -1 - chr3 10767483 10767575 chr3,10767483,10767669,-,MER5B,DNA,hAT-Charlie,-1,177,1,10767482,10767669 -4 - chr3 10771424 10771549 chr3,10771424,10771549,+,MIR3,SINE,MIR,69,192,-16,10771356,10771565 +6 + chr3 11006098 11006189 chr3,11006010,11006189,+,MER63A,DNA,hAT-Blackjack,1,210,0,11006010,11006189 -5 + chr3 11007219 11007330 chr3,11007219,11007330,+,L2b,LINE,L2,3246,3357,-18,11003974,11007348 -6 + chr3 11019120 11019224 chr3,11019090,11019579,+,L1MB2,LINE,L1,5586,6082,-89,11013505,11019668 -1 + chr3 11607184 11607400 chr3,11607014,11607610,+,L1MB8,LINE,L1,5569,6173,-5,11601446,11607615 +1 + chr3 12832219 12832323 chr3,12832203,12832323,-,Charlie15b,DNA,hAT-Charlie,-36,1025,896,12832167,12833218 +5 - chr3 12832568 12832684 chr3,12832568,12832684,+,MER46C,DNA,TcMar-Tigger,6,139,-199,12832563,12832883 -6 + chr3 12832700 12832728 chr3,12832700,12832787,+,MER2B,DNA,TcMar-Tigger,249,336,0,12832452,12832787 -1 + chr3 12878905 12878993 chr3,12878673,12879153,-,LTR15,LTR,ERV1,0,493,1,12878673,12879153 +3 - chr3 12884974 12885071 chr3,12884974,12885071,-,LTR41,LTR,ERVL,-661,107,4,12884313,12885074 +6 - chr3 12885155 12885211 chr3,12885155,12885336,+,L1MC5a,LINE,L1,703,900,-1877,12884453,12887213 -1 + chr3 13479881 13479998 chr3,13479881,13479998,-,MIR3,SINE,MIR,-79,129,12,13479802,13480009 +6 - chr3 13650696 13650747 chr3,13650690,13650747,+,(GCGGT)n,Simple_repeat,Simple_repeat,1,57,0,13650690,13650747 +1 + chr3 13650738 13650783 chr3,13650738,13650783,+,(GGCCA)n,Simple_repeat,Simple_repeat,1,48,0,13650738,13650783 +6 + chr3 13650818 13650833 chr3,13650818,13650937,+,Charlie4a,DNA,hAT-Charlie,25,153,-355,13650794,13651292 +4 + chr3 13718236 13718354 chr3,13718185,13718389,+,MIR,SINE,MIR,28,222,-40,13718158,13718429 +3 + chr3 13735636 13735828 chr3,13730403,13736844,-,L1PA7,LINE,L1,-5,6464,5,13730398,13736848 -3 - chr3 14145052 14145095 chr3,14145052,14145120,+,FLAM_A,SINE,Alu,52,129,-13,14145001,14145133 +4 + chr3 14272373 14272791 chr3,14272353,14272791,-,LTR7,LTR,ERV1,-19,431,1,14272334,14272791 +5 - chr3 14272795 14272843 chr3,14272795,14272844,-,AluJb,SINE,Alu,-75,237,194,14272720,14273037 +2 - chr3 14348451 14348773 chr3,14348448,14348963,+,L1MB3,LINE,L1,5674,6176,-7,14342775,14348970 -5 + chr3 14349353 14349465 chr3,14348963,14349713,+,L1ME1,LINE,L1,5304,6129,-50,14343660,14349763 -3 + chr3 14350760 14350852 chr3,14350760,14350852,-,MIR1_Amn,SINE,MIR,-60,170,75,14350700,14350926 +6 - chr3 14351331 14351517 chr3,14351331,14351517,+,L2b,LINE,L2,3127,3327,-48,14348205,14351565 -6 + chr3 14351543 14351707 chr3,14351543,14351707,+,MIRc,SINE,MIR,23,199,-69,14351521,14351776 -6 + chr3 14351920 14352099 chr3,14351920,14352099,-,MIR,SINE,MIR,-2,260,80,14351918,14352178 +6 - chr3 14352194 14352383 chr3,14352194,14352383,+,MLT1H2,LTR,ERVL-MaLR,44,252,-237,14352151,14352620 -6 + chr3 14764952 14764967 chr3,14764565,14764967,-,MLT1G3,LTR,ERVL-MaLR,-108,461,1,14764457,14764967 +5 - chr3 14764970 14765249 chr3,14764970,14765249,+,L3,LINE,CR1,2886,3219,-880,14762085,14766129 -6 + chr3 14799331 14799348 chr3,14799107,14799348,+,MIR,SINE,MIR,13,259,-3,14799095,14799351 -5 + chr3 14799352 14799689 chr3,14799352,14799689,+,L1ME4c,LINE,L1,4720,4979,-1167,14794633,14800856 -6 + chr3 14800416 14800481 chr3,14800416,14800481,+,MIRb,SINE,MIR,113,178,-90,14800304,14800571 -6 + chr3 14800497 14800554 chr3,14800497,14800554,-,L2b,LINE,L2,-1,3374,3318,14800496,14803871 +6 - chr3 14800558 14800736 chr3,14800558,14800736,+,MER45A,DNA,hAT-Tip100,3,177,-1,14800556,14800737 -6 + chr3 14801003 14801139 chr3,14801003,14801139,+,MIRc,SINE,MIR,17,178,-90,14800987,14801229 -6 + chr3 14801541 14801752 chr3,14801541,14801752,-,MIRb,SINE,MIR,0,262,48,14801541,14801799 +6 - chr3 14802945 14803021 chr3,14802945,14803114,+,MIRb,SINE,MIR,46,258,-4,14802900,14803118 -2 + chr3 14803215 14803296 chr3,14803184,14803652,-,L2a,LINE,L2,-7,3419,2909,14803177,14806560 +3 - chr3 14920378 14920483 chr3,14920378,14920504,+,FLAM_C,SINE,Alu,5,130,-13,14920374,14920517 -2 + chr3 14943418 14943500 chr3,14943418,14943500,-,L2b,LINE,L2,-3,3372,3284,14943415,14946783 +6 - chr3 14943691 14943794 chr3,14943691,14943794,+,MER5B,DNA,hAT-Charlie,1,104,-74,14943691,14943868 -6 + chr3 14944241 14944404 chr3,14944241,14944404,+,MIR,SINE,MIR,10,200,-68,14944232,14944472 -6 + chr3 14944565 14944679 chr3,14944565,14944679,+,AluSz6,SINE,Alu,1,111,-201,14944565,14944880 -6 + chr3 14944679 14944972 chr3,14944679,14944972,-,AluSq2,SINE,Alu,-17,296,1,14944662,14944972 +5 - chr3 14944972 14944996 chr3,14944972,14944996,+,AluSz6,SINE,Alu,112,131,-181,14944861,14945177 -6 + chr3 14945072 14946154 chr3,14945072,14946290,-,HSMAR1,DNA,TcMar-Mariner,0,1287,11,14945072,14946300 +2 - chr3 14948239 14948269 chr3,14948239,14948269,+,(CTC)n,Simple_repeat,Simple_repeat,1,31,0,14948239,14948269 -6 + chr3 15254184 15254207 chr3,15254066,15254207,-,AluJb,SINE,Alu,-171,141,1,15253895,15254207 -1 - chr3 15254437 15254598 chr3,15254437,15254598,+,MER5B,DNA,hAT-Charlie,4,165,-13,15254434,15254611 +6 + chr3 15256210 15256241 chr3,15256210,15256241,+,(TACTGC)n,Simple_repeat,Simple_repeat,1,31,0,15256210,15256241 +6 + chr3 15258546 15258639 chr3,15258525,15258639,+,MER103C,DNA,hAT-Charlie,121,238,-59,15258405,15258698 +2 + chr3 15258605 15258698 chr3,15258605,15258698,-,MER103C,DNA,hAT-Charlie,-194,103,7,15258411,15258704 -6 - chr3 15259366 15259540 chr3,15259366,15259540,-,MER5A,DNA,hAT-Charlie,0,189,1,15259366,15259540 -6 - chr3 15264296 15264493 chr3,15264185,15264547,+,LTR37A,LTR,ERV1,39,426,0,15264147,15264547 +5 + chr3 15438646 15438822 chr3,15438514,15438822,-,AluSz,SINE,Alu,0,312,3,15438514,15438824 +5 - chr3 15441489 15441511 chr3,15441489,15441511,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,15441489,15441511 -4 + chr3 15441554 15441669 chr3,15441554,15441684,+,FLAM_C,SINE,Alu,1,130,-13,15441554,15441697 -2 + chr3 15443065 15443187 chr3,15443065,15443187,+,L2c,LINE,L2,3260,3382,-5,15439806,15443192 -6 + chr3 15443322 15443560 chr3,15443322,15443795,-,MLT1H,LTR,ERVL-MaLR,-4,545,9,15443318,15443803 +1 - chr3 15444042 15444069 chr3,15444042,15444288,-,MLT1H1,LTR,ERVL-MaLR,0,579,290,15444042,15444577 +1 - chr3 15444243 15444288 chr3,15444042,15444288,-,MLT1H1,LTR,ERVL-MaLR,0,579,290,15444042,15444577 +1 - chr3 15447684 15447733 chr3,15447422,15447733,-,AluJb,SINE,Alu,0,312,2,15447422,15447734 +4 - chr3 15449947 15449994 chr3,15449942,15450006,+,MIR3,SINE,MIR,87,154,-54,15449856,15450060 -1 + chr3 16314439 16314565 chr3,16314406,16314565,+,MER5B,DNA,hAT-Charlie,1,163,-15,16314406,16314580 +1 + chr3 16339738 16339838 chr3,16339738,16339838,+,L1M4,LINE,L1,785,875,-6642,16338954,16346480 +6 + chr3 16345126 16345243 chr3,16344981,16345264,+,MLT1E2,LTR,ERVL-MaLR,288,572,-55,16344694,16345319 +1 + chr3 16346245 16346309 chr3,16346245,16346309,+,L2a,LINE,L2,3319,3422,-4,16342927,16346313 +6 + chr3 16530771 16530899 chr3,16530548,16531321,-,L2b,LINE,L2,-2,3373,2558,16530546,16533878 -1 - chr3 16536320 16536494 chr3,16536103,16536551,+,MLT1J,LTR,ERVL-MaLR,24,481,-31,16536080,16536582 +1 + chr3 16540335 16540463 chr3,16540248,16540463,-,L2,LINE,L2,-527,2892,2674,16539721,16543136 -2 - chr3 16697379 16697479 chr3,16697224,16697676,-,LTR49-int,LTR,ERV1,-7770,500,1,16689454,16697676 +1 - chr3 17990023 17990035 chr3,17989956,17990035,-,MER5A,DNA,hAT-Charlie,-23,166,16,17989933,17990050 -1 - chr3 17990128 17990177 chr3,17990128,17990351,+,MIR,SINE,MIR,3,229,-33,17990126,17990384 +4 + chr3 17995366 17995544 chr3,17995366,17995601,+,MLT1J,LTR,ERVL-MaLR,215,444,-68,17995152,17995669 +5 + chr3 18013655 18013758 chr3,18013303,18013758,-,L2c,LINE,L2,-186,3189,2702,18013117,18016459 -1 - chr3 18016618 18016711 chr3,18016414,18016792,+,MSTA,LTR,ERVL-MaLR,1,428,0,18016414,18016792 +3 + chr3 18041449 18041548 chr3,18040846,18041722,+,L2c,LINE,L2,2503,3387,0,18038344,18041722 +5 + chr3 18041588 18041603 chr3,18040846,18041722,+,L2c,LINE,L2,2503,3387,0,18038344,18041722 +5 + chr3 18445149 18445210 chr3,18445149,18445210,+,(CGGCC)n,Simple_repeat,Simple_repeat,1,63,0,18445149,18445210 +6 + chr3 18445288 18445321 chr3,18445288,18445321,+,(GCC)n,Simple_repeat,Simple_repeat,1,33,0,18445288,18445321 +6 + chr3 18462811 18462935 chr3,18462713,18462935,-,MIR,SINE,MIR,-28,234,3,18462685,18462937 -1 - chr3 18462942 18463075 chr3,18462942,18463075,+,L1ME4c,LINE,L1,480,621,-209,18462463,18463284 +6 + chr3 18463071 18463180 chr3,18463071,18463180,+,L1ME4a,LINE,L1,5956,6070,-54,18457116,18463234 +6 + chr3 18463216 18463399 chr3,18463216,18463399,+,MIR,SINE,MIR,3,200,-62,18463214,18463461 +6 + chr3 18465296 18465358 chr3,18465296,18465401,-,L2c,LINE,L2,-20,3367,3272,18465276,18468672 -4 - chr3 18465963 18466039 chr3,18465874,18466041,+,MIRc,SINE,MIR,92,258,-10,18465783,18466051 +1 + chr3 18468986 18469037 chr3,18468787,18469037,-,Charlie10,DNA,hAT-Charlie,-2563,259,1,18466224,18469037 -2 - chr3 18469040 18469562 chr3,18469040,18469562,-,LTR81,LTR,Gypsy,-212,977,402,18468828,18469963 -6 - chr3 18469562 18469702 chr3,18469562,18469980,+,MER63B,DNA,hAT-Blackjack,1,434,-2,18469562,18469982 +5 + chr3 18525791 18526442 chr3,18524875,18526442,-,L1MEc,LINE,L1,-4654,1746,32,18520221,18526473 -1 - chr3 18529981 18530248 chr3,18529891,18530248,-,MLT1I,LTR,ERVL-MaLR,-11,400,19,18529880,18530266 -5 - chr3 18534997 18535024 chr3,18534997,18535279,+,AluSc5,SINE,Alu,1,281,-28,18534997,18535307 +5 + chr3 18693887 18693953 chr3,18692573,18694307,-,L1PA3,LINE,L1,-4307,1848,124,18688266,18694430 -1 - chr3 18697900 18697964 chr3,18696972,18697964,-,HAL1,LINE,L1,-16,2491,1455,18696956,18699418 -2 - chr3 18745744 18745841 chr3,18745725,18745888,-,MER5A1,DNA,hAT-Charlie,-5,161,1,18745720,18745888 -1 - chr3 18747437 18747491 chr3,18747437,18747653,-,MIR,SINE,MIR,-21,241,20,18747416,18747672 -5 - chr3 18846851 18846953 chr3,18846845,18846954,-,LTR16A1,LTR,ERVL,-3,453,336,18846842,18847289 -3 - chr3 20342468 20342545 chr3,20342255,20342545,+,L2b,LINE,L2,3117,3385,-2,20339139,20342547 +1 + chr3 20342632 20342733 chr3,20342632,20342733,+,MIR1_Amn,SINE,MIR,23,130,-100,20342610,20342833 +6 + chr3 20342851 20343005 chr3,20342851,20343005,+,MamRep137,DNA,TcMar-Tigger,233,389,-121,20342619,20343126 +6 + chr3 20345660 20345782 chr3,20345636,20345938,-,AluSp,SINE,Alu,-14,299,1,20345622,20345938 -3 - chr3 20346025 20346042 chr3,20345942,20346042,+,L2c,LINE,L2,3074,3161,-214,20342869,20346256 +2 + chr3 20347997 20348089 chr3,20347815,20348109,-,AluJr,SINE,Alu,-21,291,1,20347794,20348109 -3 - chr3 20350715 20350812 chr3,20350383,20350812,+,MLT2B1,LTR,ERVL,3,520,0,20350381,20350812 +2 + chr3 20388249 20388316 chr3,20387721,20388316,+,MER57-int,LTR,ERV1,6930,7536,-1,20380792,20388317 +1 + chr3 20388316 20388738 chr3,20388316,20388738,+,MER57A1,LTR,ERV1,1,429,-3,20388316,20388741 +6 + chr3 20388820 20388852 chr3,20388820,20388852,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,20388820,20388852 +6 + chr3 20389520 20389704 chr3,20389520,20389704,-,MIR,SINE,MIR,-47,221,31,20389473,20389734 -6 - chr3 20389681 20389927 chr3,20389681,20389927,+,L2c,LINE,L2,3125,3387,0,20386557,20389927 +6 + chr3 20390101 20390562 chr3,20390101,20391223,-,L2,LINE,L2,-399,3020,1811,20389702,20393033 -5 - chr3 21413017 21413041 chr3,21413017,21413041,+,(ATT)n,Simple_repeat,Simple_repeat,1,24,0,21413017,21413041 -6 + chr3 21413862 21413944 chr3,21413862,21413959,-,MER124,DNA?,DNA?,-5,392,293,21413857,21414251 +1 - chr3 21542816 21542962 chr3,21542638,21542962,+,MER61A,LTR,ERV1,3,341,0,21542636,21542962 +1 + chr3 21542962 21542995 chr3,21542962,21543030,+,MER61-int,LTR,ERV1,1,63,-5154,21542962,21548184 +4 + chr3 21579369 21579381 chr3,21579369,21579617,+,Charlie18a,DNA,hAT-Charlie,67,310,-32,21579303,21579649 +4 + chr3 21579628 21579959 chr3,21579618,21580036,-,MLT1C,LTR,ERVL-MaLR,-7,460,1,21579611,21580036 -5 - chr3 21957136 21957192 chr3,21956908,21957276,+,THE1A,LTR,ERVL-MaLR,1,355,0,21956908,21957276 +1 + chr3 21978215 21978291 chr3,21978210,21978316,+,L2c,LINE,L2,3281,3376,-11,21974930,21978327 +3 + chr3 23804428 23804509 chr3,23804428,23804509,+,Plat_L3,LINE,CR1,3513,3605,0,23800916,23804509 -6 + chr3 23806889 23806905 chr3,23806889,23806973,+,(CCTGC)n,Simple_repeat,Simple_repeat,1,91,0,23806889,23806973 -1 + chr3 24096285 24096346 chr3,24096285,24096346,-,L2c,LINE,L2,-1,3386,3308,24096284,24099653 +6 - chr3 24096834 24096879 chr3,24096834,24096879,+,(TCA)n,Simple_repeat,Simple_repeat,1,45,0,24096834,24096879 -6 + chr3 24100148 24100372 chr3,24100148,24100372,-,AluJb,SINE,Alu,-12,300,1,24100136,24100372 +6 - chr3 24100689 24100817 chr3,24100689,24100817,-,MamGypsy2-I,LTR,Gypsy,-3468,698,564,24097221,24101380 +6 - chr3 24100831 24100971 chr3,24100831,24100971,-,MamGypsy2-I,LTR,Gypsy,-3920,246,81,24096911,24101051 +6 - chr3 24102667 24103050 chr3,24102667,24103050,+,MSTB,LTR,ERVL-MaLR,9,426,0,24102659,24103050 -6 + chr3 24457977 24458105 chr3,24457948,24458105,-,MER5A1,DNA,hAT-Charlie,0,166,1,24457948,24458105 +4 - chr3 24458925 24458964 chr3,24458925,24458964,+,(TATT)n,Simple_repeat,Simple_repeat,1,40,0,24458925,24458964 -6 + chr3 24458964 24459434 chr3,24458964,24459832,-,L1PA7,LINE,L1,-7,6147,5275,24458957,24465106 +1 - chr3 24498625 24499013 chr3,24498360,24499013,-,MER45B,DNA,hAT-Tip100,-371,669,1,24497989,24499013 -1 - chr3 24499106 24499321 chr3,24499106,24499321,-,MIRb,SINE,MIR,-1,267,43,24499105,24499363 -6 - chr3 24499532 24499717 chr3,24499531,24499717,+,MLT1J2,LTR,ERVL-MaLR,241,441,-7,24499291,24499724 +1 + chr3 24499531 24499580 chr3,24499531,24499717,+,MLT1J2,LTR,ERVL-MaLR,241,441,-7,24499291,24499724 -1 + chr3 24499865 24499989 chr3,24499865,24499989,-,L1ME3,LINE,L1,0,6162,6039,24499865,24506027 -6 - chr3 24500000 24500293 chr3,24500000,24500293,-,L1ME2,LINE,L1,-249,5915,5617,24499751,24505909 -6 - chr3 24687919 24687941 chr3,24687700,24687941,+,MLT1F,LTR,ERVL-MaLR,201,436,-112,24687500,24688053 +1 + chr3 24833089 24833222 chr3,24832901,24833733,+,L2,LINE,L2,1771,2585,-834,24831131,24834567 +3 + chr3 25060125 25060176 chr3,25060055,25060182,-,MIR3,SINE,MIR,-5,203,73,25060050,25060254 -3 - chr3 25858533 25858581 chr3,25858313,25858581,+,LTR49-int,LTR,ERV1,6,288,-6043,25858308,25864624 -5 + chr3 25858581 25858634 chr3,25858581,25858634,-,MADE1,DNA,TcMar-Mariner,-27,53,1,25858554,25858634 +6 - chr3 25858664 25858775 chr3,25858664,25858775,+,LTR49-int,LTR,ERV1,494,607,-4329,25858171,25863104 -6 + chr3 25860691 25860752 chr3,25860606,25860947,-,THE1B,LTR,ERVL-MaLR,0,364,3,25860606,25860949 +3 - chr3 25862988 25863053 chr3,25862745,25863258,+,MER34B-int,LTR,ERV1,4815,5356,0,25857931,25863258 -3 + chr3 25863285 25863379 chr3,25863258,25863789,+,LTR49,LTR,ERV1,1,592,-3,25863258,25863792 -3 + chr3 25872338 25872431 chr3,25872338,25872431,+,AmnSINE1,SINE,5S-Deu-L2,391,481,-94,25871948,25872525 -6 + chr3 25873641 25873700 chr3,25873562,25874112,-,MLT1G1,LTR,ERVL-MaLR,-1,578,1,25873561,25874112 +1 - chr3 26619330 26619368 chr3,26619120,26619368,+,MLT1G1,LTR,ERVL-MaLR,287,579,0,26618834,26619368 -5 + chr3 27638400 27638776 chr3,27638400,27638806,+,MER102b,DNA,hAT-Charlie,4,378,-2050,27638397,27640856 +5 + chr3 27821488 27821724 chr3,27815983,27821983,-,L1PA7,LINE,L1,-5,6149,125,27815978,27822107 -1 - chr3 27830888 27831052 chr3,27830770,27831052,-,MIRb,SINE,MIR,0,268,7,27830770,27831058 +5 - chr3 27831670 27831832 chr3,27831670,27831832,-,L2b,LINE,L2,-2,3373,3182,27831668,27835013 +6 - chr3 27831832 27832400 chr3,27831832,27832400,-,LTR67B,LTR,ERVL,0,620,1,27831832,27832400 +6 - chr3 27832400 27833088 chr3,27832400,27833088,-,L2b,LINE,L2,-194,3181,2403,27832206,27835490 +6 - chr3 27833292 27833389 chr3,27833292,27833389,+,(TTTTCC)n,Simple_repeat,Simple_repeat,1,102,0,27833292,27833389 -6 + chr3 27834017 27834136 chr3,27834017,27834298,-,MLT1G1,LTR,ERVL-MaLR,-277,302,1,27833740,27834298 +1 - chr3 27891101 27891301 chr3,27891101,27891316,+,MIRc,SINE,MIR,19,268,0,27891083,27891316 +5 + chr3 27997210 27997658 chr3,27995152,27997658,-,L1PA3,LINE,L1,0,6155,3649,27995152,28001306 +5 - chr3 28576357 28576401 chr3,28576357,28576401,+,(CCAGCC)n,Simple_repeat,Simple_repeat,1,47,0,28576357,28576401 +6 + chr3 28736009 28736163 chr3,28733182,28737034,-,L1PA10,LINE,L1,-2450,3881,3,28730732,28737036 -3 - chr3 29264220 29264623 chr3,29264220,29264623,+,MLT1L,LTR,ERVL-MaLR,3,387,-223,29264218,29264846 -6 + chr3 29616135 29616206 chr3,29616135,29616206,-,L1ME1,LINE,L1,-2,6177,6108,29616133,29622313 +6 - chr3 29616206 29616513 chr3,29616206,29616513,+,AluSq,SINE,Alu,3,310,-3,29616204,29616516 -6 + chr3 29616513 29616628 chr3,29616513,29616628,-,L1ME1,LINE,L1,-72,6107,5993,29616441,29622620 +6 - chr3 29617044 29617055 chr3,29617044,29617083,+,(ATGG)n,Simple_repeat,Simple_repeat,1,40,0,29617044,29617083 -1 + chr3 30524990 30525141 chr3,30524974,30525141,-,MER63B,DNA,hAT-Blackjack,-26,410,274,30524948,30525414 +5 - chr3 30526832 30526947 chr3,30526816,30526947,-,AluSc5,SINE,Alu,-178,131,1,30526638,30526947 -2 - chr3 30697661 30697728 chr3,30697495,30697728,+,MIR,SINE,MIR,6,246,-16,30697490,30697744 +1 + chr3 30697796 30697852 chr3,30697796,30697852,-,Charlie16a,DNA,hAT-Charlie,-218,124,69,30697578,30697920 -6 - chr3 30698022 30698123 chr3,30698022,30698123,+,MIRc,SINE,MIR,149,255,-13,30697874,30698136 +6 + chr3 30698221 30698314 chr3,30698221,30698314,-,MIRb,SINE,MIR,-78,190,94,30698143,30698407 -6 - chr3 30698529 30698587 chr3,30698529,30698587,-,L2c,LINE,L2,-76,3311,3254,30698453,30701840 -6 - chr3 30698797 30698929 chr3,30698797,30698929,-,MLT1D,LTR,ERVL-MaLR,-1,466,335,30698796,30699263 -6 - chr3 30698931 30699115 chr3,30698931,30699115,-,MLT1D,LTR,ERVL-MaLR,-292,175,1,30698639,30699115 -6 - chr3 31710955 31711026 chr3,31710955,31711026,-,L2c,LINE,L2,-44,3343,3273,31710911,31714298 -6 - chr3 31713874 31713951 chr3,31713696,31713951,+,L2a,LINE,L2,3116,3387,-39,31710581,31713990 +2 + chr3 31718115 31718270 chr3,31718115,31718426,-,AluSc8,SINE,Alu,0,311,1,31718115,31718426 -4 - chr3 32236688 32236730 chr3,32236224,32236730,+,MLT1H1,LTR,ERVL-MaLR,6,555,0,32236219,32236730 -5 + chr3 32236732 32236908 chr3,32236732,32236908,+,MER46C,DNA,TcMar-Tigger,144,331,-7,32236589,32236915 -6 + chr3 32237059 32237234 chr3,32237059,32237234,-,MER5A,DNA,hAT-Charlie,-12,177,1,32237047,32237234 +6 - chr3 32237674 32237801 chr3,32237674,32237801,-,MIR3,SINE,MIR,-39,169,39,32237635,32237839 +6 - chr3 33144104 33144242 chr3,33143477,33144307,-,L2a,LINE,L2,0,3426,2480,33143477,33146786 +5 - chr3 33793693 33793757 chr3,33793693,33793757,-,U3,snRNA,snRNA,-146,71,8,33793547,33793764 +6 - chr3 33795690 33796123 chr3,33795690,33796123,-,L2a,LINE,L2,-4,3422,2868,33795686,33798990 +6 - chr3 33796369 33796658 chr3,33796369,33796658,+,L2b,LINE,L2,2491,2798,-621,33793879,33797279 -6 + chr3 33796726 33796950 chr3,33796726,33797019,+,AluSz6,SINE,Alu,1,294,-18,33796726,33797037 -1 + chr3 33797149 33797221 chr3,33797035,33797221,-,L1ME4a,LINE,L1,-4,6120,5917,33797031,33803137 +5 - chr3 33797291 33797648 chr3,33797291,33797648,-,L1MC5a,LINE,L1,-299,2478,2080,33796992,33799727 +6 - chr3 34170845 34170856 chr3,34170364,34170856,-,L1M7,LINE,L1,-5723,520,71,34164641,34170926 -2 - chr3 34268322 34268751 chr3,34267853,34268751,+,HAL1ME,LINE,L1,1,949,-1516,34267853,34270267 +2 + chr3 34268751 34268811 chr3,34268751,34268993,+,AluJb,SINE,Alu,2,239,-73,34268750,34269066 +5 + chr3 34360805 34360920 chr3,34360791,34360920,+,MLT1J2,LTR,ERVL-MaLR,67,194,-254,34360725,34361174 +2 + chr3 34360995 34361061 chr3,34360995,34361106,+,MLT1J2,LTR,ERVL-MaLR,328,442,-2,34360668,34361108 +5 + chr3 34535946 34536075 chr3,34535835,34536112,+,L2,LINE,L2,2765,3078,-341,34533071,34536453 -3 + chr3 34562776 34562877 chr3,34562691,34562932,-,L1MC4a,LINE,L1,-1046,6996,6727,34561645,34569658 -5 - chr3 36819347 36819632 chr3,36819347,36819735,+,L1MB2,LINE,L1,5775,6168,-3,36813573,36819738 -2 + chr3 36820550 36820589 chr3,36820473,36820589,-,MIRb,SINE,MIR,-111,157,37,36820362,36820625 +5 - chr3 36822396 36822498 chr3,36822315,36822774,-,MLT1H1,LTR,ERVL-MaLR,0,555,28,36822315,36822801 +1 - chr3 36973117 36973155 chr3,36973060,36973155,-,L1MC5a,LINE,L1,-2,2775,2667,36973058,36975821 +5 - chr3 37182115 37182208 chr3,37182115,37182208,+,L1ME2z,LINE,L1,6339,6431,-13,37175777,37182221 +6 + chr3 37182224 37182338 chr3,37182224,37182338,-,L2a,LINE,L2,-635,2784,2663,37181589,37185000 -6 - chr3 37217135 37217988 chr3,37217135,37218608,+,MER52A,LTR,ERV1,164,1755,0,37216972,37218608 +5 + chr3 37241789 37242231 chr3,37241697,37242231,-,MER1A,DNA,hAT-Charlie,0,529,2,37241697,37242232 +5 - chr3 37243576 37243604 chr3,37243576,37243604,+,(CAG)n,Simple_repeat,Simple_repeat,1,28,0,37243576,37243604 -6 + chr3 37745761 37745959 chr3,37745761,37746001,-,L4_C_Mam,LINE,RTE-X,-500,4638,4383,37745261,37750383 +2 - chr3 37749536 37749547 chr3,37749463,37749547,-,L1MB8,LINE,L1,-168,6010,5929,37749295,37755475 +4 - chr3 37805829 37805972 chr3,37805663,37805972,-,AluSq2,SINE,Alu,-14,299,1,37805649,37805972 +5 - chr3 37805972 37806103 chr3,37805972,37806103,-,L1M5,LINE,L1,-520,5604,5460,37805452,37811562 +5 - chr3 37806274 37806325 chr3,37806274,37806325,+,(GT)n,Simple_repeat,Simple_repeat,1,51,0,37806274,37806325 -6 + chr3 37806545 37806575 chr3,37806545,37806575,+,(TGCTT)n,Simple_repeat,Simple_repeat,1,31,0,37806545,37806575 -6 + chr3 37807091 37807307 chr3,37807091,37807307,+,MIRb,SINE,MIR,1,242,-26,37807091,37807333 -6 + chr3 37807302 37807409 chr3,37807302,37807409,-,L2c,LINE,L2,-224,3163,3054,37807078,37810462 +6 - chr3 37807600 37807755 chr3,37807600,37807755,+,FRAM,SINE,Alu,1,162,-14,37807600,37807769 -6 + chr3 37808071 37808328 chr3,37808071,37808328,-,MLT1O,LTR,ERVL-MaLR,-177,365,104,37807894,37808431 +6 - chr3 37808546 37808880 chr3,37808546,37809054,-,MLT1H1,LTR,ERVL-MaLR,-4,551,1,37808542,37809054 +5 - chr3 37818277 37818562 chr3,37818251,37818562,-,AluSz,SINE,Alu,0,312,1,37818251,37818562 +5 - chr3 37818562 37818643 chr3,37818562,37818643,-,MER103C,DNA,hAT-Charlie,-226,71,3,37818336,37818645 +6 - chr3 37821311 37821390 chr3,37821311,37821390,-,L2a,LINE,L2,-2,3424,3345,37821309,37824734 +6 - chr3 37834704 37835163 chr3,37834704,37835217,+,MER44B,DNA,TcMar-Tigger,5,543,-7,37834700,37835224 -1 + chr3 37851424 37851492 chr3,37851406,37851887,-,MER74A,LTR,ERVL,-75,483,3,37851331,37851889 +3 - chr3 38451027 38451362 chr3,38450949,38451362,-,LOR1b,LTR,ERV1,0,461,60,38450949,38451421 +5 - chr3 38451362 38451650 chr3,38451362,38451650,+,AluSq,SINE,Alu,23,312,-1,38451340,38451651 -6 + chr3 38451711 38451890 chr3,38451711,38451890,-,L2-1_AMi,LINE,L2,-655,580,402,38451056,38452291 +6 - chr3 38451964 38452175 chr3,38451964,38452175,+,ERVL-E-int,LTR,ERVL,4208,4415,-1252,38447757,38453427 -6 + chr3 38452435 38452732 chr3,38452435,38452732,-,AluSz6,SINE,Alu,-17,295,1,38452418,38452732 +6 - chr3 38452792 38452860 chr3,38452792,38452860,-,MIR3,SINE,MIR,-91,177,99,38452701,38452958 +6 - chr3 38454760 38454778 chr3,38454760,38454778,+,(GCA)n,Simple_repeat,Simple_repeat,1,18,0,38454760,38454778 -6 + chr3 38824272 38824361 chr3,38824251,38824361,-,L2c,LINE,L2,-26,3361,3243,38824225,38827603 -2 - chr3 40390954 40391262 chr3,40390954,40391262,-,AluSz,SINE,Alu,-4,308,1,40390950,40391262 +6 - chr3 40391395 40391705 chr3,40391395,40391705,+,AluSx1,SINE,Alu,2,312,0,40391394,40391705 -6 + chr3 40392460 40392569 chr3,40392460,40392589,+,FLAM_C,SINE,Alu,2,135,-8,40392459,40392597 -2 + chr3 40399474 40399525 chr3,40399434,40399525,-,MIR,SINE,MIR,-123,139,32,40399311,40399556 +4 - chr3 40446343 40446499 chr3,40445917,40446499,-,L2a,LINE,L2,-3,3423,2733,40445914,40449231 +5 - chr3 40446499 40446847 chr3,40446499,40447096,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,40446499,40447096 +2 - chr3 40466466 40466520 chr3,40466398,40466520,+,AluSg7,SINE,Alu,1,131,-178,40466398,40466698 +1 + chr3 40466612 40466696 chr3,40466612,40466696,+,MIR,SINE,MIR,127,221,-41,40466486,40466737 +6 + chr3 40466963 40467067 chr3,40466963,40467067,-,L1ME3G,LINE,L1,-13,911,801,40466950,40467867 -6 - chr3 40467250 40467675 chr3,40467250,40467675,-,MLT2B2,LTR,ERVL,-71,444,15,40467179,40467689 -6 - chr3 40467675 40467822 chr3,40467675,40467822,-,L1ME3G,LINE,L1,-331,593,466,40467344,40468287 -6 - chr3 40467822 40468140 chr3,40467822,40468140,-,AluSg,SINE,Alu,-16,294,1,40467806,40468140 -6 - chr3 40468140 40468490 chr3,40468140,40468490,-,L1ME3G,LINE,L1,-459,465,145,40467681,40468634 -6 - chr3 40468553 40468587 chr3,40468553,40468730,-,L1ME3G,LINE,L1,-1485,4661,4474,40467068,40473203 -5 - chr3 40603125 40603166 chr3,40603109,40603166,-,MLT1G,LTR,ERVL-MaLR,-410,79,24,40602699,40603189 +5 - chr3 40604838 40604903 chr3,40604838,40604903,+,MIRb,SINE,MIR,23,103,-165,40604816,40605068 -6 + chr3 40604903 40605016 chr3,40604903,40605016,-,MER81,DNA,hAT-Blackjack,0,114,2,40604903,40605017 +6 - chr3 40605016 40605143 chr3,40605016,40605143,+,MIRb,SINE,MIR,104,240,-28,40604913,40605171 -6 + chr3 40605235 40605401 chr3,40605235,40605401,+,MER5A1,DNA,hAT-Charlie,1,166,0,40605235,40605401 -6 + chr3 40862392 40862626 chr3,40862370,40862669,-,AluSx,SINE,Alu,-12,300,1,40862358,40862669 -5 - chr3 40970541 40970864 chr3,40970488,40971010,-,LTR16E1,LTR,ERVL,0,538,2,40970488,40971011 +5 - chr3 40971408 40971578 chr3,40971408,40971598,+,L2b,LINE,L2,3160,3365,-10,40968249,40971608 -1 + chr3 41163178 41163261 chr3,41163178,41163628,-,LTR16C,LTR,ERVL,0,489,1,41163178,41163628 +2 - chr3 42506524 42506828 chr3,42506518,42506828,-,AluSx1,SINE,Alu,-3,309,1,42506515,42506828 +5 - chr3 42516766 42516836 chr3,42516766,42516929,+,MIR,SINE,MIR,63,262,0,42516704,42516929 -2 + chr3 42521314 42521368 chr3,42521313,42521368,-,MER91A,DNA,hAT-Tip100,-141,55,1,42521172,42521368 +4 - chr3 42532603 42532711 chr3,42532603,42532711,+,L2a,LINE,L2,3262,3423,-3,42529342,42532714 -6 + chr3 42532792 42532889 chr3,42532792,42532889,-,MIRb,SINE,MIR,-26,242,131,42532766,42533019 +6 - chr3 42601963 42602097 chr3,42601842,42602117,-,L2a,LINE,L2,-41,3385,3021,42601801,42605137 +5 - chr3 42612290 42612367 chr3,42612146,42612379,+,L1ME4b,LINE,L1,605,884,-8,42611542,42612387 -5 + chr3 42654292 42654329 chr3,42654292,42654329,+,(GGGCTGG)n,Simple_repeat,Simple_repeat,1,40,0,42654292,42654329 -1 + chr3 42704149 42704221 chr3,42704117,42704221,-,MIR,SINE,MIR,-58,204,98,42704059,42704318 -2 - chr3 42704355 42704508 chr3,42704355,42704508,+,MIR,SINE,MIR,56,212,-50,42704300,42704558 +6 + chr3 42706074 42706190 chr3,42706074,42706190,+,L2b,LINE,L2,3252,3372,-3,42702823,42706193 +6 + chr3 42706220 42706340 chr3,42706220,42706340,+,L2c,LINE,L2,3266,3386,-1,42702955,42706341 +6 + chr3 42706348 42706446 chr3,42706348,42706446,-,MIRb,SINE,MIR,-6,262,162,42706342,42706607 -6 - chr3 42744943 42745053 chr3,42744866,42745053,-,MIR1_Amn,SINE,MIR,-17,251,24,42744849,42745076 -2 - chr3 42745244 42745490 chr3,42745244,42745490,-,MIR,SINE,MIR,-8,254,3,42745236,42745492 -6 - chr3 42770612 42771022 chr3,42769529,42771022,+,LTR12C,LTR,ERV1,2,1579,0,42769528,42771022 +1 + chr3 42771022 42771077 chr3,42771022,42771472,+,L1MC2,LINE,L1,5704,6116,-228,42765319,42771700 +4 + chr3 42805204 42805377 chr3,42804873,42805377,-,PABL_B,LTR,ERV1,0,667,1,42804873,42805377 +5 - chr3 42809414 42809532 chr3,42809252,42809581,-,MER39,LTR,ERV1,-106,601,267,42809146,42809847 -1 - chr3 42839094 42839279 chr3,42838991,42839358,+,LTR52,LTR,ERVL,1,382,-39,42838991,42839397 +3 + chr3 42887544 42887701 chr3,42887544,42887990,+,L1M4c,LINE,L1,268,754,-5892,42887277,42893882 +4 + chr3 42897038 42898074 chr3,42896032,42898074,+,MER50-int,LTR,ERV1,890,2737,-4468,42895143,42902542 +5 + chr3 42898070 42899469 chr3,42898070,42899469,+,MER50-int,LTR,ERV1,3284,4705,-1834,42894787,42901303 +6 + chr3 42899486 42899651 chr3,42899486,42899651,+,MER50C,LTR,ERV1,122,286,-496,42899365,42900147 +6 + chr3 42899651 42899684 chr3,42899651,42899684,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,34,0,42899651,42899684 +6 + chr3 42899689 42899960 chr3,42899689,42899960,-,AluSx1,SINE,Alu,-35,277,1,42899654,42899960 -6 - chr3 42899960 42900336 chr3,42899960,42900433,+,MER50C,LTR,ERV1,287,782,0,42899674,42900433 +5 + chr3 42934252 42934645 chr3,42934233,42934645,-,L1MEc,LINE,L1,-5168,1255,823,42929065,42935467 +5 - chr3 42934913 42934935 chr3,42934913,42934935,+,(TG)n,Simple_repeat,Simple_repeat,1,22,0,42934913,42934935 -6 + chr3 42934939 42935309 chr3,42934939,42935309,-,L1MEc,LINE,L1,-6017,406,30,42928922,42935338 +6 - chr3 42935757 42936173 chr3,42935373,42936173,+,FordPrefect,DNA,hAT-Tip100,388,1240,-443,42934986,42936616 -4 + chr3 43087861 43087994 chr3,43087861,43087994,+,MIRb,SINE,MIR,43,205,-63,43087819,43088057 +6 + chr3 43087995 43088068 chr3,43087995,43088074,+,MADE2,DNA,TcMar-Mariner,5,80,0,43087991,43088074 +5 + chr3 43351331 43351381 chr3,43351193,43351488,+,L2,LINE,L2,1223,1616,-1803,43349971,43353291 -3 + chr3 43351598 43351638 chr3,43351513,43351638,-,L1MB8,LINE,L1,-91,6087,5971,43351422,43357608 +4 - chr3 43351638 43351962 chr3,43351638,43352308,+,L2,LINE,L2,2025,2827,-592,43349614,43352900 -1 + chr3 43778961 43779137 chr3,43778724,43779173,+,MLT1F2,LTR,ERVL-MaLR,107,560,0,43778618,43779173 -5 + chr3 43779595 43779717 chr3,43779408,43779798,+,MSTB1,LTR,ERVL-MaLR,1,432,0,43779408,43779798 -3 + chr3 44115818 44115921 chr3,44115705,44115921,+,AluJr,SINE,Alu,85,293,-19,44115621,44115940 -5 + chr3 44116220 44116593 chr3,44116220,44116593,+,L2a,LINE,L2,3019,3426,0,44113202,44116593 -6 + chr3 44116842 44116917 chr3,44116842,44116917,-,MIR,SINE,MIR,-175,87,13,44116667,44116929 +6 - chr3 44117287 44117316 chr3,44117287,44117316,+,(CCCCA)n,Simple_repeat,Simple_repeat,1,30,0,44117287,44117316 -1 + chr3 44117299 44117316 chr3,44117287,44117316,+,(CCCCA)n,Simple_repeat,Simple_repeat,1,30,0,44117287,44117316 +1 + chr3 44117848 44117972 chr3,44117848,44117972,+,MER5A,DNA,hAT-Charlie,1,123,-66,44117848,44118038 +6 + chr3 44119779 44119935 chr3,44119779,44119935,-,MIRb,SINE,MIR,-24,244,77,44119755,44120011 -6 - chr3 44120188 44120210 chr3,44120188,44120210,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,44120188,44120210 +6 + chr3 44120733 44120815 chr3,44120733,44120815,+,L2b,LINE,L2,2966,3057,-318,44117768,44121133 +6 + chr3 44121142 44121364 chr3,44121142,44121364,+,L2b,LINE,L2,3136,3392,-34,44118007,44121398 +6 + chr3 44121671 44121991 chr3,44121671,44121991,-,MLT1J,LTR,ERVL-MaLR,-79,433,112,44121592,44122102 -6 - chr3 44122328 44122365 chr3,44122328,44122662,-,L1M5,LINE,L1,-265,5859,5495,44122063,44128156 -5 - chr3 44617451 44617599 chr3,44617451,44617599,+,AluJo,SINE,Alu,140,297,-15,44617312,44617614 -6 + chr3 44661370 44661386 chr3,44661370,44661559,-,MIRc,SINE,MIR,-72,196,2,44661298,44661560 +2 - chr3 44667412 44667489 chr3,44667242,44667489,+,L1ME4a,LINE,L1,5609,5900,-224,44661634,44667713 +1 + chr3 44667580 44667624 chr3,44667580,44667624,+,L1ME4a,LINE,L1,6074,6117,-7,44661507,44667631 +6 + chr3 44668379 44668487 chr3,44668379,44668487,-,MIRb,SINE,MIR,0,262,149,44668379,44668635 -6 - chr3 44668837 44669053 chr3,44668837,44669053,-,L1MC4a,LINE,L1,-1988,5894,5664,44666849,44674716 -6 - chr3 44669115 44669339 chr3,44669115,44669339,-,L1ME4b,LINE,L1,-611,281,23,44668504,44669361 -6 - chr3 44899223 44899350 chr3,44899223,44899350,-,MIR3,SINE,MIR,-63,145,1,44899160,44899350 -6 - chr3 45483974 45484031 chr3,45483916,45484121,+,AluJo,SINE,Alu,1,197,-115,45483916,45484236 -5 + chr3 45495250 45495442 chr3,45495250,45495442,-,MER63A,DNA,hAT-Blackjack,0,210,1,45495250,45495442 +6 - chr3 45689020 45689071 chr3,45688997,45689071,-,tRNA-Arg-CGY_,tRNA,tRNA,-2,74,1,45688995,45689071 +4 - chr3 45749627 45749887 chr3,45749585,45749887,-,AluSq10,SINE,Alu,-11,302,1,45749574,45749887 -1 - chr3 45749887 45750056 chr3,45749887,45750056,-,MLT1F2,LTR,ERVL-MaLR,-393,167,1,45749494,45750056 -6 - chr3 45750153 45750194 chr3,45750153,45750194,-,MLT1H1,LTR,ERVL-MaLR,0,555,515,45750153,45750708 -6 - chr3 45750462 45750651 chr3,45750462,45750764,-,L1ME3G,LINE,L1,-123,6119,5813,45750339,45756576 -5 - chr3 46364955 46365045 chr3,46363549,46365583,+,Tigger1,DNA,TcMar-Tigger,383,2417,-1,46363167,46365584 -5 + chr3 46392825 46392963 chr3,46392536,46392963,-,HERVH-int,LTR,ERV1,-7254,459,1,46385282,46392963 +4 - chr3 46392963 46393052 chr3,46392963,46393402,-,LTR7C,LTR,ERV1,0,471,1,46392963,46393402 +2 - chr3 46557398 46557496 chr3,46557049,46557496,+,LTR7,LTR,ERV1,1,448,-2,46557049,46557498 +1 + chr3 46557496 46557665 chr3,46557496,46557665,-,L1MEf,LINE,L1,-5204,1436,1262,46552292,46558926 -6 - chr3 46557665 46557715 chr3,46557665,46557715,-,LTR41B,LTR,ERVL,-127,631,582,46557538,46558296 -6 - chr3 46557920 46558160 chr3,46557920,46558160,-,LTR41B,LTR,ERVL,-307,451,222,46557613,46558381 -6 - chr3 46558183 46558353 chr3,46558183,46558353,-,LTR41B,LTR,ERVL,-584,174,2,46557599,46558354 -6 - chr3 46558357 46558849 chr3,46558357,46558849,-,L1MEf,LINE,L1,-5546,1001,494,46552811,46559342 -6 - chr3 46558826 46559106 chr3,46558826,46559106,+,L1MA7,LINE,L1,5886,6179,-112,46552941,46559218 +6 + chr3 47231767 47231780 chr3,47231720,47231780,+,MER5A1,DNA,hAT-Charlie,105,165,-1,47231616,47231781 +2 + chr3 47238404 47238518 chr3,47238237,47238518,-,AluJr,SINE,Alu,-32,280,1,47238205,47238518 -2 - chr3 47238518 47238569 chr3,47238518,47238614,+,Charlie7,DNA,hAT-Charlie,1712,1788,-824,47236807,47239438 +4 + chr3 47239615 47239752 chr3,47239597,47239752,-,AluSz6,SINE,Alu,-20,292,136,47239577,47239887 -2 - chr3 47239956 47240120 chr3,47239956,47240120,+,MER5A,DNA,hAT-Charlie,14,179,-10,47239943,47240130 +6 + chr3 47244091 47244272 chr3,47244091,47244272,-,MIR,SINE,MIR,-81,181,4,47244010,47244275 -6 - chr3 47244434 47244610 chr3,47244434,47244610,+,MIRb,SINE,MIR,25,207,-61,47244410,47244671 +6 + chr3 47347186 47347360 chr3,47347186,47347360,-,MER5A,DNA,hAT-Charlie,-1,188,14,47347185,47347373 -6 - chr3 47347584 47347786 chr3,47347584,47347786,-,MIRc,SINE,MIR,-50,218,3,47347534,47347788 -6 - chr3 47348052 47348093 chr3,47348052,47348093,+,(TTTC)n,Simple_repeat,Simple_repeat,1,41,0,47348052,47348093 +6 + chr3 47348203 47348432 chr3,47348203,47348432,-,AluJr,SINE,Alu,-82,230,2,47348121,47348433 -6 - chr3 47348524 47348675 chr3,47348524,47348675,+,L2b,LINE,L2,3109,3273,-102,47345416,47348777 +6 + chr3 47348821 47349073 chr3,47348821,47349753,-,L1MB8,LINE,L1,0,6178,5200,47348821,47354952 -5 - chr3 47379089 47379191 chr3,47378804,47379191,-,L1MB3,LINE,L1,-41,6142,5688,47378763,47384878 +5 - chr3 47379354 47379669 chr3,47379354,47379669,-,AluJb,SINE,Alu,0,312,2,47379354,47379670 +6 - chr3 47379735 47380039 chr3,47379735,47380039,+,L2a,LINE,L2,2482,2780,-639,47377254,47380678 -6 + chr3 47380059 47380186 chr3,47380059,47380186,-,AluSx3,SINE,Alu,-20,291,168,47380039,47380353 +6 - chr3 47601715 47601809 chr3,47601688,47601999,-,AluSx1,SINE,Alu,-5,307,1,47601683,47601999 +5 - chr3 47603345 47603441 chr3,47603140,47603441,+,AluSq2,SINE,Alu,2,302,-11,47603139,47603452 -4 + chr3 48440769 48440836 chr3,48440769,48440836,+,MamRTE1,LINE,RTE-BovB,2955,3019,-793,48437815,48441629 -5 + chr3 48445024 48445165 chr3,48445023,48445185,+,AluJr,SINE,Alu,134,295,-17,48444890,48445202 -3 + chr3 48669099 48669137 chr3,48669076,48669137,-,FAM,SINE,Alu,-8,177,100,48669068,48669236 -2 - chr3 48847787 48847823 chr3,48847787,48847823,+,(CCG)n,Simple_repeat,Simple_repeat,1,37,0,48847787,48847823 +6 + chr3 48848202 48848325 chr3,48848202,48848325,-,L2b,LINE,L2,-212,3163,3035,48847990,48851359 -6 - chr3 48849342 48849630 chr3,48849342,48849630,-,AluSx3,SINE,Alu,-21,290,2,48849321,48849631 -5 - chr3 48849630 48849926 chr3,48849630,48849926,-,AluSq2,SINE,Alu,-15,298,1,48849615,48849926 -6 - chr3 48849927 48850233 chr3,48849927,48850233,-,AluY,SINE,Alu,-9,302,1,48849918,48850233 -6 - chr3 48850235 48850529 chr3,48850235,48850529,-,AluSx,SINE,Alu,-19,293,1,48850216,48850529 -6 - chr3 48850543 48850832 chr3,48850543,48850832,-,AluSx,SINE,Alu,-9,303,1,48850534,48850832 -6 - chr3 48850833 48851241 chr3,48850833,48851241,-,LTR32,LTR,ERVL,-7,450,1,48850826,48851241 -6 - chr3 48979918 48979967 chr3,48979914,48979967,+,(T)n,Simple_repeat,Simple_repeat,1,53,0,48979914,48979967 -5 + chr3 49260092 49260398 chr3,49260092,49260398,+,AluSx4,SINE,Alu,1,301,-9,49260092,49260407 +6 + chr3 49260773 49260837 chr3,49260773,49260837,+,MamRTE1,LINE,RTE-BovB,1410,1474,-2338,49259364,49263175 +6 + chr3 49365145 49365224 chr3,49365143,49365442,-,AluSx1,SINE,Alu,-13,299,1,49365130,49365442 +5 - chr3 49366570 49366606 chr3,49366320,49366606,+,AluSx,SINE,Alu,1,286,-26,49366320,49366632 -4 + chr3 49366699 49366803 chr3,49366699,49366803,+,MIRb,SINE,MIR,57,161,-107,49366643,49366910 -6 + chr3 49422946 49423038 chr3,49422942,49423038,-,L2c,LINE,L2,-2,3385,3295,49422940,49426332 -1 - chr3 49423474 49423525 chr3,49423474,49423774,+,AluSp,SINE,Alu,1,301,-12,49423474,49423786 +4 + chr3 49549321 49549418 chr3,49549321,49549418,+,L2c,LINE,L2,3245,3356,-31,49546077,49549449 -6 + chr3 49549528 49549823 chr3,49549528,49549823,-,AluSg4,SINE,Alu,-12,298,4,49549516,49549826 +6 - chr3 49550949 49551254 chr3,49550949,49551254,-,AluJb,SINE,Alu,-5,307,1,49550944,49551254 +6 - chr3 49553548 49553593 chr3,49553411,49553593,+,MamRTE1,LINE,RTE-BovB,2499,2699,-1113,49550913,49554706 -4 + chr3 49640485 49640793 chr3,49640485,49640799,-,AluSz,SINE,Alu,-1,311,1,49640484,49640799 +2 - chr3 49903642 49903673 chr3,49903642,49903673,+,(GGCCTG)n,Simple_repeat,Simple_repeat,1,31,0,49903642,49903673 +6 + chr3 49903902 49903944 chr3,49903902,49903944,+,(GCCGG)n,Simple_repeat,Simple_repeat,1,44,0,49903902,49903944 +6 + chr3 50117512 50117790 chr3,50117512,50117790,+,AluSx,SINE,Alu,15,296,-16,50117498,50117806 -6 + chr3 50260316 50260346 chr3,50260316,50260346,+,(GGAG)n,Simple_repeat,Simple_repeat,1,30,0,50260316,50260346 +6 + chr3 50262013 50262310 chr3,50262013,50262310,+,AluSx1,SINE,Alu,1,298,-14,50262013,50262324 +6 + chr3 50262319 50262448 chr3,50262319,50262448,+,FLAM_C,SINE,Alu,1,130,-13,50262319,50262461 +6 + chr3 50263217 50263358 chr3,50263217,50263527,+,AluJb,SINE,Alu,6,311,-1,50263212,50263528 +5 + chr3 50670123 50670245 chr3,50670123,50670245,-,L2b,LINE,L2,0,3375,3249,50670123,50673493 -6 - chr3 50670669 50670969 chr3,50670669,50670969,-,AluSz,SINE,Alu,-11,301,1,50670658,50670969 -1 - chr3 51873596 51873659 chr3,51873508,51873659,-,MER117,DNA,hAT-Charlie,-37,160,5,51873471,51873663 -1 - chr3 51874261 51874298 chr3,51874261,51874412,+,MIRc,SINE,MIR,15,176,-92,51874247,51874504 +4 + chr3 51874388 51874412 chr3,51874261,51874412,+,MIRc,SINE,MIR,15,176,-92,51874247,51874504 +2 + chr3 51951891 51951983 chr3,51951891,51951983,+,MER102c,DNA,hAT-Charlie,211,304,-27,51951681,51952010 -6 + chr3 51952158 51952246 chr3,51952158,51952246,+,MIR3,SINE,MIR,76,174,-34,51952083,51952280 -6 + chr3 51952330 51952537 chr3,51952330,51952537,-,L2a,LINE,L2,-57,3369,3153,51952273,51955689 +6 - chr3 51952537 51952848 chr3,51952537,51952848,+,AluY,SINE,Alu,2,301,-10,51952536,51952858 -6 + chr3 51952848 51953146 chr3,51952848,51953146,+,AluY,SINE,Alu,1,296,-15,51952848,51953161 -6 + chr3 51953146 51953545 chr3,51953146,51953545,-,L2a,LINE,L2,-274,3152,2766,51952872,51956310 +6 - chr3 51953545 51953902 chr3,51953545,51953993,-,LTR33A,LTR,ERVL,-4,516,1,51953541,51953993 +1 - chr3 52217641 52217954 chr3,52217641,52217954,+,AluSz,SINE,Alu,1,312,0,52217641,52217954 -6 + chr3 52218439 52218592 chr3,52218439,52218592,-,MIR,SINE,MIR,-77,185,20,52218362,52218611 +6 - chr3 52240232 52240359 chr3,52240232,52240359,+,MLT1K,LTR,ERVL-MaLR,189,318,-277,52240044,52240636 +6 + chr3 52240898 52241080 chr3,52240898,52241080,+,L2a,LINE,L2,3198,3426,0,52237701,52241080 +6 + chr3 52288580 52288654 chr3,52288509,52288654,+,MER53,DNA,hAT,35,193,0,52288475,52288654 -5 + chr3 52289027 52289201 chr3,52289027,52289201,-,MIR3,SINE,MIR,-2,206,21,52289025,52289221 +6 - chr3 52296657 52296699 chr3,52296511,52296699,+,MIRc,SINE,MIR,2,228,-40,52296510,52296739 -5 + chr3 52299010 52299057 chr3,52299010,52299057,+,GA-rich,Low_complexity,Low_complexity,1,49,0,52299010,52299057 -1 + chr3 52848085 52848143 chr3,52847655,52848143,+,MLT1D,LTR,ERVL-MaLR,1,498,-7,52847655,52848150 -5 + chr3 53046166 53046203 chr3,53046087,53046203,+,(GCGCCC)n,Simple_repeat,Simple_repeat,1,124,0,53046087,53046203 +1 + chr3 53047685 53047878 chr3,53047685,53047878,-,L1ME4c,LINE,L1,-616,214,2,53047069,53047879 -6 - chr3 53859860 53860039 chr3,53859860,53860039,+,AluSz6,SINE,Alu,131,312,0,53859730,53860039 -6 + chr3 53860396 53860484 chr3,53860396,53860484,-,MIR3,SINE,MIR,-117,91,1,53860279,53860484 +6 - chr3 53860615 53861576 chr3,53860615,53863307,+,Tigger2,DNA,TcMar-Tigger,1,2718,0,53860615,53863307 -1 + chr3 54632478 54632807 chr3,54632478,54632901,-,MER110A,LTR,ERV1,-14,477,62,54632464,54632962 +2 - chr3 54633559 54633720 chr3,54633393,54633720,-,MER61A,LTR,ERV1,-1,340,1,54633392,54633720 +4 - chr3 54633720 54633740 chr3,54633720,54633802,+,MIR,SINE,MIR,156,246,-16,54633565,54633818 -2 + chr3 54634461 54634481 chr3,54634217,54634481,+,L2a,LINE,L2,3008,3299,-127,54631210,54634608 -4 + chr3 54634483 54634565 chr3,54634483,54634934,-,LTR7,LTR,ERV1,-2,448,1,54634481,54634934 +2 - chr3 54637691 54639750 chr3,54636818,54639750,-,HERVH-int,LTR,ERV1,-4726,2987,1,54632092,54639750 +4 - chr3 54639752 54639857 chr3,54639752,54640204,-,LTR7,LTR,ERV1,-2,448,1,54639750,54640204 +1 - chr3 54874605 54874767 chr3,54874551,54874767,-,MIR,SINE,MIR,0,262,17,54874551,54874783 +5 - chr3 54874886 54874931 chr3,54874886,54874931,+,L2a,LINE,L2,3376,3419,-7,54871511,54874938 -6 + chr3 55166910 55166989 chr3,55166790,55166989,+,MER3,DNA,hAT-Charlie,1,208,-1,55166790,55166990 -5 + chr3 55171203 55171261 chr3,55170928,55171336,+,L2b,LINE,L2,2956,3375,0,55167973,55171336 -3 + chr3 55175571 55175675 chr3,55175537,55175675,-,MIR,SINE,MIR,-89,173,37,55175448,55175711 +4 - chr3 55189096 55189214 chr3,55188896,55189298,-,L2,LINE,L2,-340,3079,2651,55188556,55191948 -5 - chr3 55296200 55296316 chr3,55295694,55296371,-,L1MB7,LINE,L1,0,6184,5479,55295694,55301849 -1 - chr3 55299254 55299538 chr3,55299041,55299538,+,MLT1F2,LTR,ERVL-MaLR,8,559,-1,55299034,55299539 +2 + chr3 55299545 55299938 chr3,55299545,55299938,-,L1ME3G,LINE,L1,-450,474,56,55299095,55299993 -6 - chr3 55300006 55300607 chr3,55300006,55300607,-,L1MC4,LINE,L1,-653,7389,6760,55299353,55307366 -6 - chr3 55300619 55300738 chr3,55300619,55300759,-,L1ME1,LINE,L1,-49,6130,5985,55300570,55306743 -5 - chr3 55335462 55335492 chr3,55335398,55335492,+,MER5A,DNA,hAT-Charlie,90,186,-3,55335309,55335495 -5 + chr3 55360443 55360589 chr3,55360269,55360589,+,LTR33,LTR,ERVL,14,331,-184,55360256,55360773 -5 + chr3 55360592 55360715 chr3,55360592,55360875,-,L2,LINE,L2,-618,2801,2503,55359974,55363377 +2 - chr3 55488132 55488165 chr3,55488132,55488165,+,G-rich,Low_complexity,Low_complexity,1,34,0,55488132,55488165 +6 + chr3 55505198 55505261 chr3,55505081,55505454,-,THE1D,LTR,ERVL-MaLR,-2,379,1,55505079,55505454 +1 - chr3 55610603 55610711 chr3,55610549,55610711,+,AluJb,SINE,Alu,132,287,-25,55610418,55610736 +1 + chr3 55612695 55612736 chr3,55612683,55612858,-,L1MB8,LINE,L1,0,6178,6004,55612683,55618861 -3 - chr3 55612947 55613027 chr3,55612947,55613027,-,MER53,DNA,hAT,-109,84,1,55612838,55613027 -6 - chr3 56940040 56940059 chr3,56939847,56940059,+,MLT1O,LTR,ERVL-MaLR,21,222,-320,56939827,56940379 +1 + chr3 56940891 56940916 chr3,56940769,56940916,-,MIRb,SINE,MIR,-4,264,114,56940765,56941029 -2 - chr3 57080072 57080101 chr3,57080072,57080220,-,MIRb,SINE,MIR,0,262,103,57080072,57080322 -5 - chr3 57600059 57600169 chr3,57600032,57600324,-,AluJb,SINE,Alu,-11,301,1,57600021,57600324 -3 - chr3 57600743 57600881 chr3,57600741,57600881,+,AluJo,SINE,Alu,1,134,-178,57600741,57601059 +2 + chr3 57693816 57693856 chr3,57693696,57693856,-,MIRb,SINE,MIR,-19,249,98,57693677,57693953 -2 - chr3 57694235 57694443 chr3,57694235,57694443,+,AluJo,SINE,Alu,114,306,-6,57694122,57694449 +6 + chr3 57694786 57694842 chr3,57694786,57694842,+,MIR3,SINE,MIR,14,70,-198,57694773,57695040 +6 + chr3 57695019 57695307 chr3,57695019,57695307,+,AluJo,SINE,Alu,1,287,-25,57695019,57695332 +6 + chr3 57695412 57695491 chr3,57695412,57695491,+,AluJb,SINE,Alu,209,287,-25,57695204,57695516 +6 + chr3 57695921 57696044 chr3,57695921,57696044,-,L3,LINE,CR1,-11,4088,3957,57695910,57700000 -6 - chr3 57696044 57696324 chr3,57696044,57696324,+,AluSx,SINE,Alu,21,300,-12,57696024,57696336 +6 + chr3 57696326 57696596 chr3,57696326,57696611,+,AluSz,SINE,Alu,2,284,-28,57696325,57696639 +5 + chr3 58164104 58164268 chr3,58164104,58164268,-,L1MC4a,LINE,L1,-1943,5939,5761,58162161,58170028 +6 - chr3 58164776 58164914 chr3,58164776,58164914,-,MIRb,SINE,MIR,-114,154,27,58164662,58164940 +6 - chr3 58165998 58166115 chr3,58165998,58166198,+,MIR,SINE,MIR,20,212,-50,58165979,58166248 -2 + chr3 58329965 58329986 chr3,58329687,58329986,-,AluSz,SINE,Alu,-13,299,1,58329674,58329986 -1 - chr3 58330030 58330113 chr3,58330030,58330113,-,L1ME4a,LINE,L1,-201,5923,5831,58329829,58335943 -6 - chr3 58572744 58572790 chr3,58572720,58572833,-,MLT1M,LTR,ERVL-MaLR,-386,286,166,58572334,58572998 -1 - chr3 58574235 58574319 chr3,58574235,58574409,-,MER5B,DNA,hAT-Charlie,0,178,4,58574235,58574412 -5 - chr3 58607682 58607945 chr3,58607649,58608045,+,MLT1E1A,LTR,ERVL-MaLR,282,676,-4,58607368,58608049 +3 + chr3 58632539 58632660 chr3,58632518,58632791,-,AluSx,SINE,Alu,-13,299,1,58632505,58632791 -3 - chr3 58634370 58634409 chr3,58634370,58634409,+,GA-rich,Low_complexity,Low_complexity,1,40,0,58634370,58634409 +6 + chr3 58970358 58970638 chr3,58970188,58970638,+,MLT1C,LTR,ERVL-MaLR,3,467,0,58970186,58970638 +2 + chr3 58970685 58970728 chr3,58970685,58970812,+,MIRc,SINE,MIR,104,228,-2,58970582,58970814 +5 + chr3 59017696 59017929 chr3,59017696,59017929,-,MLT1L,LTR,ERVL-MaLR,-1,609,350,59017695,59018278 -6 - chr3 59017954 59018216 chr3,59017954,59018216,-,MLT1L,LTR,ERVL-MaLR,-323,272,1,59017631,59018216 -6 - chr3 59018264 59019093 chr3,59018264,59019099,+,L1MC4,LINE,L1,7171,8042,0,59011094,59019099 +5 + chr3 59065150 59065266 chr3,59058839,59065561,-,L1PB1,LINE,L1,-1,6866,2,59058838,59065562 -1 - chr3 59119100 59119230 chr3,59119100,59119230,+,HAL1,LINE,L1,1494,1635,-872,59117607,59120102 +6 + chr3 59119230 59119509 chr3,59119230,59119525,+,AluJo,SINE,Alu,1,296,-16,59119230,59119541 +5 + chr3 59380322 59380542 chr3,59380322,59380542,+,MIRc,SINE,MIR,17,251,-17,59380306,59380559 -6 + chr3 59388671 59388704 chr3,59388283,59388806,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,59388283,59388806 +1 - chr3 59510392 59510437 chr3,59510318,59510437,-,MIRc,SINE,MIR,-43,187,54,59510275,59510490 +4 - chr3 62263681 62263730 chr3,62263681,62263730,-,L1MB7,LINE,L1,-13,6171,6125,62263668,62269854 +6 - chr3 62263730 62263865 chr3,62263730,62263865,+,AluSz6,SINE,Alu,1,131,-181,62263730,62264046 -6 + chr3 62263865 62264142 chr3,62263865,62264161,+,AluY,SINE,Alu,1,297,-14,62263865,62264175 -5 + chr3 62292622 62292717 chr3,62292622,62292832,+,MER20,DNA,hAT-Charlie,1,219,0,62292622,62292832 -5 + chr3 62317808 62317903 chr3,62317772,62318136,-,L2a,LINE,L2,0,3426,3025,62317772,62321160 +3 - chr3 62950430 62950518 chr3,62950233,62950594,+,THE1B,LTR,ERVL-MaLR,1,364,0,62950233,62950594 +1 + chr3 62952007 62952083 chr3,62950595,62952165,+,THE1B-int,LTR,ERVL-MaLR,2,1580,0,62950594,62952165 +3 + chr3 62953707 62953752 chr3,62953595,62953752,-,MER5A1,DNA,hAT-Charlie,0,166,2,62953595,62953753 -2 - chr3 62953761 62953780 chr3,62953761,62953979,+,MER58A,DNA,hAT-Charlie,1,217,-7,62953761,62953986 +4 + chr3 62985036 62985119 chr3,62984933,62985304,+,MLT1H,LTR,ERVL-MaLR,138,525,-24,62984796,62985328 +3 + chr3 63118861 63118942 chr3,63118861,63119000,+,MER5B,DNA,hAT-Charlie,4,174,-4,63118858,63119004 +4 + chr3 63122256 63122297 chr3,63122148,63122297,-,MIRc,SINE,MIR,-10,258,94,63122138,63122390 -2 - chr3 63123323 63123448 chr3,63123203,63123462,+,L3,LINE,CR1,3837,4098,-1,63119367,63123463 +3 + chr3 63124729 63125062 chr3,63124729,63125105,+,LTR16A,LTR,ERVL,17,451,0,63124713,63125105 +5 + chr3 63423596 63423765 chr3,63423301,63423838,-,LTR45,LTR,ERV1,0,525,1,63423301,63423838 +5 - chr3 63426713 63426806 chr3,63426344,63426861,-,LTR75_1,LTR,ERV1,0,546,1,63426344,63426861 +3 - chr3 63860645 63860823 chr3,63860348,63860823,+,L4_A_Mam,LINE,RTE-X,4471,4985,-5,63855878,63860828 +1 + chr3 63861499 63861528 chr3,63861259,63861528,+,L2,LINE,L2,2451,2724,-695,63858809,63862223 +2 + chr3 63861547 63861687 chr3,63861547,63861687,+,MIR,SINE,MIR,9,161,-101,63861539,63861788 +6 + chr3 63861774 63861793 chr3,63861774,63861793,+,(GT)n,Simple_repeat,Simple_repeat,1,19,0,63861774,63861793 +6 + chr3 63861793 63861819 chr3,63861793,63862089,-,AluJb,SINE,Alu,-15,297,2,63861778,63862090 -5 - chr3 64004398 64004460 chr3,64004398,64004460,-,L2b,LINE,L2,-272,3103,3042,64004126,64007501 -6 - chr3 64005193 64005606 chr3,64005193,64005606,-,L2b,LINE,L2,-681,2738,2280,64004512,64007885 -6 - chr3 64005664 64005842 chr3,64005664,64005842,-,MIRb,SINE,MIR,-23,245,45,64005641,64005886 -6 - chr3 64008436 64008619 chr3,64008436,64008619,+,MER30,DNA,hAT-Charlie,1,230,0,64008436,64008619 -6 + chr3 64011797 64011905 chr3,64011779,64011905,-,MIRc,SINE,MIR,-115,153,16,64011664,64011920 -2 - chr3 64015906 64016186 chr3,64015906,64016186,+,AluYj4,SINE,Alu,1,281,-30,64015906,64016216 +6 + chr3 64016186 64016213 chr3,64016186,64016213,+,(AAAT)n,Simple_repeat,Simple_repeat,1,27,0,64016186,64016213 +6 + chr3 64019508 64019648 chr3,64019504,64019648,+,L1MC5,LINE,L1,9122,9276,-28,64010383,64019676 +1 + chr3 64078361 64078758 chr3,64078308,64078758,-,MLT1C,LTR,ERVL-MaLR,0,467,1,64078308,64078758 +5 - chr3 64083131 64083155 chr3,64083131,64083155,+,(GGA)n,Simple_repeat,Simple_repeat,1,24,0,64083131,64083155 -6 + chr3 64098471 64098493 chr3,64098471,64098493,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,64098471,64098493 +6 + chr3 64100006 64100063 chr3,64100006,64100063,+,MER91A,DNA,hAT-Tip100,2,62,-134,64100005,64100197 +6 + chr3 64101021 64101081 chr3,64101021,64101081,+,L1ME3,LINE,L1,5555,5614,-548,64095467,64101629 +6 + chr3 64101089 64101173 chr3,64101089,64101173,-,L1M5,LINE,L1,-724,5720,5630,64100365,64106802 -5 - chr3 64101163 64101349 chr3,64101163,64101349,+,L1ME3,LINE,L1,5601,5795,-367,64095563,64101716 +6 + chr3 64101343 64102242 chr3,64101343,64102242,+,L1MC4,LINE,L1,6792,7689,-353,64094552,64102595 +6 + chr3 64102242 64102749 chr3,64102242,64102749,+,MER1A,DNA,hAT-Charlie,2,527,-2,64102241,64102751 +6 + chr3 64102749 64103113 chr3,64102749,64103113,+,L1MC4,LINE,L1,7690,8042,0,64095060,64103113 +6 + chr3 64103470 64103504 chr3,64103345,64103673,+,L1ME3,LINE,L1,5789,6159,-3,64097557,64103676 +1 + chr3 64106014 64106056 chr3,64105979,64106087,+,L2a,LINE,L2,3248,3357,-30,64102732,64106117 +5 + chr3 64190298 64190347 chr3,64190298,64190367,+,MIR,SINE,MIR,183,252,-10,64190116,64190377 +4 + chr3 64194302 64194312 chr3,64194302,64194340,+,L2c,LINE,L2,3342,3379,-8,64190961,64194348 +4 + chr3 64199965 64200457 chr3,64199965,64200457,-,L1MB7,LINE,L1,-8,6176,5662,64199957,64206118 -6 - chr3 64200458 64200620 chr3,64200458,64200620,-,AluJb,SINE,Alu,-14,298,137,64200444,64200756 -6 - chr3 64200620 64200914 chr3,64200620,64200914,-,AluSg,SINE,Alu,-17,293,1,64200603,64200914 -6 - chr3 64200923 64200965 chr3,64200923,64201228,-,AluY,SINE,Alu,-8,303,1,64200915,64201228 -5 - chr3 64454805 64454832 chr3,64454805,64454921,-,MLT1J2,LTR,ERVL-MaLR,-295,153,34,64454510,64454954 -5 - chr3 64565405 64565522 chr3,64565348,64565522,-,MER104,DNA,TcMar-Tc2,-3,178,7,64565345,64565528 -2 - chr3 64582577 64582773 chr3,64582577,64582773,+,MER20,DNA,hAT-Charlie,18,218,-1,64582560,64582774 +6 + chr3 64583480 64583692 chr3,64583480,64583692,-,MER20,DNA,hAT-Charlie,-7,212,1,64583473,64583692 -5 - chr3 64587404 64587595 chr3,64587404,64587595,-,MER3,DNA,hAT-Charlie,-1,208,9,64587403,64587603 -6 - chr3 64588313 64588413 chr3,64588313,64588413,+,L2a,LINE,L2,3314,3417,-9,64585000,64588422 +6 + chr3 64589468 64589587 chr3,64589468,64589587,+,MIR,SINE,MIR,135,262,0,64589334,64589587 +6 + chr3 64741474 64741614 chr3,64741452,64741758,-,AluJr,SINE,Alu,-12,300,1,64741440,64741758 -3 - chr3 64800160 64800549 chr3,64800160,64800549,-,L1MC2,LINE,L1,-9,6335,5902,64800151,64806450 -6 - chr3 64800552 64800648 chr3,64800552,64800648,+,(TA)n,Simple_repeat,Simple_repeat,1,96,0,64800552,64800648 +6 + chr3 64800653 64800753 chr3,64800653,64800753,-,L1MC2,LINE,L1,-442,5902,5803,64800211,64806555 -6 - chr3 64800800 64801110 chr3,64800800,64801110,+,AluJb,SINE,Alu,3,312,0,64800798,64801110 +6 + chr3 64801518 64801555 chr3,64801518,64801555,+,(T)n,Simple_repeat,Simple_repeat,1,37,0,64801518,64801555 +6 + chr3 64801632 64801884 chr3,64801632,64801884,+,MIRb,SINE,MIR,3,248,-20,64801630,64801904 +6 + chr3 64802708 64802725 chr3,64802708,64802737,+,A-rich,Low_complexity,Low_complexity,1,29,0,64802708,64802737 +5 + chr3 64809795 64809851 chr3,64809777,64810050,-,L2b,LINE,L2,0,3426,3125,64809777,64813174 -3 - chr3 64867168 64867257 chr3,64867132,64867368,-,MER39,LTR,ERV1,-96,611,361,64867036,64867728 -3 - chr3 64973812 64973926 chr3,64973634,64973926,-,AluJr,SINE,Alu,-24,288,1,64973610,64973926 -2 - chr3 64974177 64974293 chr3,64974177,64974293,+,MER45A,DNA,hAT-Tip100,58,173,-5,64974120,64974298 +6 + chr3 64974755 64975047 chr3,64974755,64975047,+,MLT1L,LTR,ERVL-MaLR,71,474,-136,64974685,64975183 +6 + chr3 64975295 64975402 chr3,64975295,64975402,+,L2b,LINE,L2,3279,3382,-5,64972017,64975407 +6 + chr3 65011007 65011135 chr3,65011007,65011135,+,L2a,LINE,L2,3296,3425,-1,65007712,65011136 +6 + chr3 65011130 65011260 chr3,65011130,65011260,+,MIR3,SINE,MIR,73,205,-3,65011058,65011263 +6 + chr3 65174958 65175038 chr3,65174544,65175038,-,MLT1K,LTR,ERVL-MaLR,-11,584,99,65174533,65175136 -1 - chr3 65359414 65359442 chr3,65359414,65359442,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,65359414,65359442 -6 + chr3 65872815 65873071 chr3,65872578,65873071,+,L1ME3,LINE,L1,5653,6162,0,65866926,65873071 -5 + chr3 65873686 65874003 chr3,65873686,65874003,+,L1MB8,LINE,L1,4852,5155,-991,65868835,65874994 -6 + chr3 65874003 65874286 chr3,65874003,65874286,+,AluJo,SINE,Alu,1,289,-23,65874003,65874309 -6 + chr3 65874286 65874936 chr3,65874286,65874936,+,L1MB8,LINE,L1,5156,5826,-352,65869131,65875288 -6 + chr3 65874936 65875050 chr3,65874936,65875060,+,AluJr,SINE,Alu,2,125,-187,65874935,65875247 -2 + chr3 65893816 65893917 chr3,65893701,65894182,-,MLT1G,LTR,ERVL-MaLR,0,591,53,65893701,65894234 -1 - chr3 65924930 65925088 chr3,65924930,65925088,-,MER103C,DNA,hAT-Charlie,-146,151,1,65924784,65925088 -6 - chr3 67304380 67304629 chr3,67304342,67304629,-,AluJr,SINE,Alu,0,312,23,67304342,67304651 -2 - chr3 67304666 67304755 chr3,67304666,67304755,+,MamRTE1,LINE,RTE-BovB,196,281,-3531,67304471,67308286 +6 + chr3 67304676 67304771 chr3,67304676,67304771,+,MamSINE1,SINE,tRNA-RTE,176,271,-19,67304501,67304790 +6 + chr3 67305005 67305174 chr3,67305005,67305174,+,MLT1L,LTR,ERVL-MaLR,1,176,-336,67305005,67305510 +6 + chr3 67654697 67654718 chr3,67654602,67654718,+,GA-rich,Low_complexity,Low_complexity,1,114,0,67654602,67654718 +1 + chr3 67654707 67654736 chr3,67654707,67654736,+,(GGCCG)n,Simple_repeat,Simple_repeat,1,29,0,67654707,67654736 +6 + chr3 67668247 67668277 chr3,67668203,67668402,-,MIR,SINE,MIR,-30,232,30,67668173,67668431 -1 - chr3 67669881 67669909 chr3,67669881,67670114,-,MLT1K,LTR,ERVL-MaLR,-150,445,188,67669731,67670301 -4 - chr3 67670829 67671004 chr3,67670825,67671224,-,L1ME1,LINE,L1,-11,6168,5749,67670814,67676972 -3 - chr3 67746944 67747010 chr3,67746944,67747010,+,(TGAA)n,Simple_repeat,Simple_repeat,1,68,0,67746944,67747010 +6 + chr3 67747088 67747110 chr3,67747088,67747804,-,L1MC3,LINE,L1,-6,7779,7030,67747082,67754833 -5 - chr3 67749853 67749970 chr3,67749827,67750096,-,AluSx,SINE,Alu,-12,300,34,67749815,67750129 -3 - chr3 67840067 67840159 chr3,67840067,67840159,+,A-rich,Low_complexity,Low_complexity,1,98,0,67840067,67840159 +6 + chr3 67840294 67840402 chr3,67840294,67840402,+,MIR3,SINE,MIR,38,153,-109,67840257,67840511 +6 + chr3 67840407 67840839 chr3,67840407,67840917,+,MLT1F,LTR,ERVL-MaLR,13,548,0,67840395,67840917 +4 + chr3 67844233 67844338 chr3,67844217,67844338,+,MamRep137,DNA,TcMar-Tigger,264,385,-125,67843954,67844463 +2 + chr3 67844337 67844352 chr3,67844337,67844424,+,MamRep137,DNA,TcMar-Tigger,418,508,-2,67843920,67844426 +4 + chr3 67889010 67889042 chr3,67888803,67889042,+,L1M4,LINE,L1,27,258,-7259,67888777,67896301 +2 + chr3 67889042 67889109 chr3,67889042,67889342,+,AluSg,SINE,Alu,1,302,-8,67889042,67889350 +4 + chr3 67947141 67947421 chr3,67947139,67947421,-,AluSc,SINE,Alu,-30,279,2,67947109,67947422 -2 - chr3 67947596 67947641 chr3,67947596,67947641,+,MIRb,SINE,MIR,215,259,-9,67947382,67947650 +6 + chr3 67947649 67947713 chr3,67947649,67947782,-,MIRb,SINE,MIR,-86,176,44,67947563,67947825 -5 - chr3 69016804 69017507 chr3,69016580,69017939,+,L1MC5,LINE,L1,7454,8905,-399,69009127,69018338 +5 + chr3 69030259 69030679 chr3,69030259,69031650,+,L1MD2,LINE,L1,4905,6359,0,69025355,69031650 +5 + chr3 69033850 69033956 chr3,69033843,69034112,-,AluJb,SINE,Alu,-25,287,1,69033818,69034112 -3 - chr3 69040375 69040457 chr3,69039794,69040605,+,L1MC4,LINE,L1,7163,8010,-32,69032632,69040637 +3 + chr3 69564106 69564261 chr3,69564061,69564589,-,MLT1K,LTR,ERVL-MaLR,-11,584,20,69564050,69564608 +5 - chr3 69592445 69592884 chr3,69592428,69592884,-,L2c,LINE,L2,0,3387,2935,69592428,69595818 -2 - chr3 69593095 69593121 chr3,69593095,69593370,-,AluJo,SINE,Alu,-30,282,6,69593065,69593375 -5 - chr3 69999577 69999620 chr3,69999500,70000000,+,LTR1A2,LTR,ERV1,1,500,-337,69999500,70000337 +1 + chr3 69999744 69999867 chr3,69999500,70000000,+,LTR1A2,LTR,ERV1,1,500,-337,69999500,70000337 +1 + chr3 70012357 70012598 chr3,70012207,70012665,+,MLT1D,LTR,ERVL-MaLR,1,499,-6,70012207,70012671 +3 + chr3 70013598 70013672 chr3,70013598,70013757,+,Charlie16a,DNA,hAT-Charlie,42,204,-138,70013557,70013895 +4 + chr3 70013797 70013901 chr3,70013797,70013901,-,MLT1K,LTR,ERVL-MaLR,-34,561,454,70013763,70014354 -5 - chr3 70014015 70014188 chr3,70014015,70014188,-,MLT1K,LTR,ERVL-MaLR,-136,459,288,70013879,70014475 -6 - chr3 70014998 70015318 chr3,70014998,70015320,+,AluY,SINE,Alu,1,311,0,70014998,70015320 +5 + chr3 71276087 71276127 chr3,71275987,71276127,-,MER127,DNA,TcMar-Tigger,-6,358,219,71275981,71276345 +5 - chr3 71289543 71289616 chr3,71289523,71289640,+,L2a,LINE,L2,2095,2233,-1186,71287429,71290826 -1 + chr3 71289769 71289917 chr3,71289640,71289917,-,AluJo,SINE,Alu,-6,306,36,71289634,71289952 -1 - chr3 71289917 71289971 chr3,71289917,71290698,+,L2a,LINE,L2,2234,2956,-463,71287684,71291161 +4 + chr3 71292517 71292634 chr3,71292320,71292634,-,AluSz,SINE,Alu,-1,311,1,71292319,71292634 -2 - chr3 71570255 71570286 chr3,71570249,71570286,+,(T)n,Simple_repeat,Simple_repeat,1,37,0,71570249,71570286 -5 + chr3 71572456 71572830 chr3,71572456,71572839,+,L1ME3E,LINE,L1,5814,6185,-57,71566643,71572896 -2 + chr3 71585224 71585250 chr3,71585224,71585250,+,(TTG)n,Simple_repeat,Simple_repeat,1,26,0,71585224,71585250 +6 + chr3 71585859 71585950 chr3,71585859,71585950,-,L2b,LINE,L2,-21,3354,3254,71585838,71589203 -6 - chr3 71585960 71586051 chr3,71585960,71586051,-,MIR,SINE,MIR,0,262,164,71585960,71586214 -6 - chr3 71587253 71587359 chr3,71587253,71587359,-,MER113,DNA,hAT-Charlie,-107,414,294,71587146,71587652 -6 - chr3 71627641 71627752 chr3,71627461,71627752,-,AluSz,SINE,Alu,-19,293,4,71627442,71627755 -2 - chr3 72035522 72035712 chr3,72035522,72035712,+,LTR33A_,LTR,ERVL,346,531,0,72035177,72035712 -6 + chr3 72036258 72036520 chr3,72036258,72036781,-,MLT1K,LTR,ERVL-MaLR,-19,576,3,72036239,72036783 +2 - chr3 72059775 72059937 chr3,72059775,72059937,+,MER5A1,DNA,hAT-Charlie,1,166,0,72059775,72059937 -5 + chr3 72060510 72060611 chr3,72060425,72060788,-,THE1B,LTR,ERVL-MaLR,0,364,1,72060425,72060788 +5 - chr3 72060764 72060788 chr3,72060425,72060788,-,THE1B,LTR,ERVL-MaLR,0,364,1,72060425,72060788 +5 - chr3 72061061 72061173 chr3,72061029,72061237,+,MamRep605,LTR?,LTR?,455,645,-204,72060575,72061441 +5 + chr3 72061029 72061094 chr3,72061029,72061237,+,MamRep605,LTR?,LTR?,455,645,-204,72060575,72061441 -5 + chr3 72061896 72061965 chr3,72061575,72062007,-,LTR16C,LTR,ERVL,0,489,3,72061575,72062009 -3 - chr3 72067124 72067202 chr3,72067037,72067391,-,THE1B,LTR,ERVL-MaLR,0,364,1,72067037,72067391 -3 - chr3 72067912 72068020 chr3,72067737,72068217,+,MLT1F1,LTR,ERVL-MaLR,3,564,-5,72067735,72068222 +5 + chr3 72069809 72069933 chr3,72069574,72069975,+,MLT2C1,LTR,ERVL,1,397,0,72069574,72069975 +5 + chr3 72084421 72084641 chr3,72084378,72084675,-,MLT1L,LTR,ERVL-MaLR,0,610,296,72084378,72084970 +1 - chr3 72098039 72098310 chr3,72098039,72098310,-,LTR33,LTR,ERVL,-56,459,141,72097983,72098450 +6 - chr3 72098652 72098692 chr3,72098652,72098692,+,(CTCCCTG)n,Simple_repeat,Simple_repeat,1,42,0,72098652,72098692 -6 + chr3 72098710 72099011 chr3,72098710,72099033,-,LTR16A,LTR,ERVL,0,451,90,72098710,72099122 +2 - chr3 72100285 72100455 chr3,72100285,72100568,-,MER102b,DNA,hAT-Charlie,-2,339,26,72100283,72100593 +1 - chr3 72159361 72159467 chr3,72159345,72159694,-,L2a,LINE,L2,0,3426,3027,72159345,72162720 -3 - chr3 72172431 72172587 chr3,72172431,72172587,+,LTR33A_,LTR,ERVL,71,223,-308,72172361,72172895 +6 + chr3 72172679 72172826 chr3,72172679,72172826,-,MER96B,DNA,hAT-Tip100,-268,149,1,72172411,72172826 -6 - chr3 72173031 72173482 chr3,72173031,72173482,+,LTR16C,LTR,ERVL,3,469,-20,72173029,72173502 +6 + chr3 72173743 72173824 chr3,72173743,72173824,+,L2c,LINE,L2,3301,3386,-1,72170443,72173825 +6 + chr3 72174195 72174218 chr3,72174195,72174218,+,(CT)n,Simple_repeat,Simple_repeat,1,23,0,72174195,72174218 +6 + chr3 72178279 72178291 chr3,72178118,72178291,+,MamRep137,DNA,TcMar-Tigger,305,482,-28,72177814,72178319 +1 + chr3 72178437 72178557 chr3,72178437,72178557,-,MIRb,SINE,MIR,-76,192,74,72178361,72178630 -6 - chr3 72178771 72178796 chr3,72178771,72178796,+,(AAT)n,Simple_repeat,Simple_repeat,1,26,0,72178771,72178796 +6 + chr3 72202976 72203076 chr3,72202976,72203076,-,MamGypLTR3a,LTR,Gypsy,-796,185,78,72202180,72203153 +6 - chr3 72203107 72203142 chr3,72203107,72203142,+,A-rich,Low_complexity,Low_complexity,1,38,0,72203107,72203142 -6 + chr3 72203182 72203408 chr3,72203182,72203408,-,MLT1K,LTR,ERVL-MaLR,-10,585,359,72203172,72203766 +6 - chr3 72203415 72203438 chr3,72203415,72203919,-,LTR33A_,LTR,ERVL,-28,503,1,72203387,72203919 +2 - chr3 72321149 72321420 chr3,72321149,72321420,-,MLT1H,LTR,ERVL-MaLR,-186,363,95,72320963,72321514 +6 - chr3 72321503 72321751 chr3,72321503,72321751,+,L1ME3G,LINE,L1,405,658,-266,72321099,72322017 -6 + chr3 72321783 72321829 chr3,72321783,72321829,+,(GT)n,Simple_repeat,Simple_repeat,1,46,0,72321783,72321829 -6 + chr3 72321939 72321965 chr3,72321939,72321965,+,(TTA)n,Simple_repeat,Simple_repeat,1,26,0,72321939,72321965 -6 + chr3 72322604 72322786 chr3,72322604,72322786,-,MER3,DNA,hAT-Charlie,-8,201,1,72322596,72322786 +6 - chr3 72323117 72323487 chr3,72323117,72323487,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,72323117,72323487 +6 - chr3 72323726 72324015 chr3,72323726,72324015,+,MER102a,DNA,hAT-Charlie,1,253,-78,72323726,72324093 -6 + chr3 72504806 72504843 chr3,72504768,72504843,-,MamTip2,DNA,hAT-Tip100,-133,172,93,72504635,72504935 +5 - chr3 72504967 72505089 chr3,72504967,72505143,+,MIR3,SINE,MIR,9,187,-21,72504959,72505164 -2 + chr3 72549385 72549504 chr3,72549316,72549538,+,MIRb,SINE,MIR,1,260,-8,72549316,72549546 -3 + chr3 72550114 72550200 chr3,72550114,72550200,+,(TTTCCC)n,Simple_repeat,Simple_repeat,1,90,0,72550114,72550200 -6 + chr3 72550209 72550552 chr3,72550209,72550611,-,MLT1C,LTR,ERVL-MaLR,-5,462,72,72550204,72550682 +1 - chr3 73623724 73623828 chr3,73623724,73623828,-,MIR,SINE,MIR,-150,112,3,73623574,73623830 -6 - chr3 73625889 73625921 chr3,73625889,73625921,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,29,0,73625889,73625921 +5 + chr3 73625944 73626059 chr3,73625944,73626059,-,MER5A1,DNA,hAT-Charlie,0,166,23,73625944,73626081 -5 - chr3 73627284 73627449 chr3,73627284,73627449,-,MER20,DNA,hAT-Charlie,0,219,67,73627284,73627515 -6 - chr3 73808601 73808668 chr3,73808390,73808744,+,THE1A,LTR,ERVL-MaLR,1,355,0,73808390,73808744 +1 + chr3 73902545 73902866 chr3,73902545,73902913,-,MamRep137,DNA,TcMar?,-102,408,61,73902443,73902973 -5 - chr3 74004471 74004591 chr3,74004471,74004591,-,MER5A,DNA,hAT-Charlie,-67,122,13,74004404,74004603 -6 - chr3 74004884 74005170 chr3,74004884,74005170,-,L2a,LINE,L2,0,3426,3129,74004884,74008298 -6 - chr3 74005184 74005240 chr3,74005184,74005240,+,MIRc,SINE,MIR,9,66,-202,74005176,74005442 +6 + chr3 74005240 74005609 chr3,74005240,74005654,+,MLT1B,LTR,ERVL-MaLR,1,390,0,74005240,74005654 +5 + chr3 75443508 75443552 chr3,75443486,75443552,-,AluJb,SINE,Alu,-2,300,238,75443484,75443789 -2 - chr3 75443582 75443646 chr3,75443582,75444971,-,LTR12C,LTR,ERV1,0,1579,3,75443582,75444973 -4 - chr3 75451210 75451322 chr3,75451014,75451322,-,AluSx3,SINE,Alu,-3,308,1,75451011,75451322 -2 - chr3 75457122 75457432 chr3,75457122,75457432,+,AluJo,SINE,Alu,2,311,-1,75457121,75457433 +6 + chr3 75673194 75673238 chr3,75672775,75676005,-,L1M1,LINE,L1,-4311,3254,24,75668464,75676028 -1 - chr3 75673847 75674006 chr3,75672775,75676005,-,L1M1,LINE,L1,-4311,3254,24,75668464,75676028 -1 - chr3 75674413 75675880 chr3,75672775,75676005,-,L1M1,LINE,L1,-4311,3254,24,75668464,75676028 -1 - chr3 75675968 75676005 chr3,75672775,75676005,-,L1M1,LINE,L1,-4311,3254,24,75668464,75676028 -1 - chr3 75676021 75676566 chr3,75676021,75676566,-,MER57A-int,LTR,ERV1,-2307,3880,3307,75673714,75679872 -6 - chr3 75676593 75676625 chr3,75676593,75676840,-,MER57A-int,LTR,ERV1,-3524,2663,2433,75673069,75679272 -5 - chr3 75678833 75679195 chr3,75678782,75679195,-,LTR66,LTR,ERVL,-172,438,1,75678610,75679195 -2 - chr3 75679195 75679303 chr3,75679195,75679650,-,L1M3,LINE,L1,-375,5786,5273,75678820,75684922 -5 - chr3 78038705 78038843 chr3,78038700,78038843,-,L2c,LINE,L2,0,3387,3231,78038700,78042073 +5 - chr3 78087404 78087451 chr3,78086496,78087451,-,Tigger3b,DNA,TcMar-Tigger,-215,1016,1,78086281,78087451 -1 - chr3 78087451 78087534 chr3,78087451,78087534,+,Tigger7,DNA,TcMar-Tigger,2405,2486,-5,78085047,78087539 +6 + chr3 78087546 78087638 chr3,78087546,78087749,-,MIR,SINE,MIR,-30,232,19,78087516,78087767 -4 - chr3 78092132 78092270 chr3,78092132,78092473,+,THE1B,LTR,ERVL-MaLR,1,364,0,78092132,78092473 +5 + chr3 78266940 78267049 chr3,78266568,78267049,+,LTR2B,LTR,ERV1,1,483,0,78266568,78267049 +1 + chr3 78267049 78267067 chr3,78267049,78269625,-,L1MA4A,LINE,L1,-4469,3097,641,78262580,78270265 -4 - chr3 78290912 78290962 chr3,78290912,78290962,+,(TTTTCTT)n,Simple_repeat,Simple_repeat,1,47,0,78290912,78290962 +6 + chr3 78291047 78291191 chr3,78291047,78291245,+,MIR,SINE,MIR,5,223,-45,78291043,78291290 +5 + chr3 78294624 78294731 chr3,78294322,78294802,-,MLT1D,LTR,ERVL-MaLR,0,505,1,78294322,78294802 -5 - chr3 80761458 80761573 chr3,80761301,80761608,+,AluJb,SINE,Alu,1,312,0,80761301,80761608 -3 + chr3 80764897 80765011 chr3,80764756,80765011,-,LTR27E,LTR,ERV1,-819,258,1,80763937,80765011 -1 - chr3 80780093 80780245 chr3,80779705,80780418,+,L1PA15,LINE,L1,5449,6165,0,80774257,80780418 +3 + chr3 80788797 80788969 chr3,80788553,80788979,+,MLT2B1,LTR,ERVL,1,442,-78,80788553,80789057 +1 + chr3 80788841 80788963 chr3,80788553,80788979,+,MLT2B1,LTR,ERVL,1,442,-78,80788553,80789057 -1 + chr3 80789262 80789354 chr3,80789262,80789435,+,MLT1B,LTR,ERVL-MaLR,210,390,0,80789053,80789435 +5 + chr3 81208193 81208405 chr3,81208031,81208595,-,MER70C,LTR,ERVL,-2,576,1,81208029,81208595 +5 - chr3 81208575 81208595 chr3,81208031,81208595,-,MER70C,LTR,ERVL,-2,576,1,81208029,81208595 +5 - chr3 81208621 81208667 chr3,81208621,81208667,+,(TTGTTG)n,Simple_repeat,Simple_repeat,1,46,0,81208621,81208667 -6 + chr3 81208686 81208806 chr3,81208686,81208806,+,L3,LINE,CR1,3814,3938,-161,81204873,81208967 -6 + chr3 81247729 81247840 chr3,81247729,81248890,+,Tigger3b,DNA,TcMar-Tigger,2,1230,-1,81247728,81248891 -2 + chr3 81252132 81252245 chr3,81251975,81252263,+,AluSg,SINE,Alu,1,295,-15,81251975,81252278 -3 + chr3 81288079 81288224 chr3,81287899,81288517,-,Tigger1,DNA,TcMar-Tigger,0,2418,1800,81287899,81290316 +3 - chr3 81763848 81763943 chr3,81763848,81764546,-,L2a,LINE,L2,-1,3425,2639,81763847,81767184 +2 - chr3 81764660 81764756 chr3,81764582,81765043,-,MLT1C,LTR,ERVL-MaLR,0,467,1,81764582,81765043 +1 - chr3 81921671 81921733 chr3,81921643,81922015,+,MLT1L,LTR,ERVL-MaLR,101,558,-52,81921543,81922067 +3 + chr3 81986138 81986349 chr3,81986020,81986349,+,MER61A,LTR,ERV1,1,341,0,81986020,81986349 +1 + chr3 81986349 81986381 chr3,81986349,81986760,+,MER61-int,LTR,ERV1,1,398,-4819,81986349,81991579 +4 + chr3 82453482 82453552 chr3,82452050,82453638,+,MSTA-int,LTR,ERVL-MaLR,1,1631,0,82452050,82453638 +3 + chr3 82454386 82454510 chr3,82454188,82454588,+,MLT1C,LTR,ERVL-MaLR,59,467,0,82454130,82454588 +3 + chr3 82455672 82455713 chr3,82454588,82455713,+,MLT1C-int,LTR,ERVL-MaLR,1,1124,-247,82454588,82455960 +2 + chr3 82455714 82455815 chr3,82455714,82455849,+,MLT1C,LTR,ERVL-MaLR,333,467,0,82455382,82455849 +4 + chr3 82457951 82458147 chr3,82457707,82458298,-,LTR24C,LTR,ERV1,0,635,1,82457707,82458298 -3 - chr3 82462916 82463530 chr3,82462883,82463530,-,MER50,LTR,ERV1,-23,711,61,82462860,82463590 -2 - chr3 82463530 82463570 chr3,82463530,82463570,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,82463530,82463570 +6 + chr3 82463570 82463613 chr3,82463570,82463613,-,MER50,LTR,ERV1,-674,60,2,82462896,82463614 -6 - chr3 82463630 82463675 chr3,82463630,82463776,+,MER92-int,LTR,ERV1,4199,4372,-846,82459432,82464622 +5 + chr3 84638406 84638897 chr3,84638125,84638897,-,L3,LINE,CR1,-1,4098,3176,84638124,84642072 +5 - chr3 84644213 84644286 chr3,84644007,84644297,+,AluSx1,SINE,Alu,1,290,-22,84644007,84644319 -3 + chr3 84669054 84669117 chr3,84669054,84669117,+,MIR,SINE,MIR,35,97,-165,84669020,84669282 -6 + chr3 84669201 84669232 chr3,84669201,84669232,+,(ACACAT)n,Simple_repeat,Simple_repeat,1,31,0,84669201,84669232 -6 + chr3 84669217 84669494 chr3,84669217,84669494,+,(AT)n,Simple_repeat,Simple_repeat,1,295,0,84669217,84669494 -6 + chr3 84671584 84671703 chr3,84671563,84671813,+,MIRb,SINE,MIR,2,268,0,84671562,84671813 -3 + chr3 84683609 84683655 chr3,84683406,84683655,-,LTR78B,LTR,ERV1,-55,1241,983,84683351,84684637 +4 - chr3 84685660 84685780 chr3,84685660,84686149,-,MLT1H-int,LTR,ERVL-MaLR,-58,1329,846,84685602,84686994 +2 - chr3 84695365 84695515 chr3,84695337,84695531,-,LTR16C,LTR,ERVL,-21,468,274,84695316,84695804 +3 - chr3 84696170 84696341 chr3,84696170,84696663,+,MLT1D,LTR,ERVL-MaLR,1,502,-3,84696170,84696666 -2 + chr3 84789638 84789772 chr3,84788525,84789992,+,ERV3-16A3_I-int,LTR,ERVL,2151,3625,-1601,84786375,84791593 -3 + chr3 84792168 84792291 chr3,84792010,84792321,+,AluSx,SINE,Alu,1,308,-4,84792010,84792325 -3 + chr3 84802703 84802752 chr3,84802703,84802975,+,MLT1K,LTR,ERVL-MaLR,328,582,-13,84802376,84802988 -2 + chr3 84859815 84859923 chr3,84859658,84859945,+,AluSz,SINE,Alu,1,297,-15,84859658,84859960 -3 + chr3 84862723 84862821 chr3,84862710,84862861,-,MIRc,SINE,MIR,-5,263,104,84862705,84862964 +3 - chr3 84863216 84863436 chr3,84862926,84863624,-,MER67C,LTR,ERV1,0,711,1,84862926,84863624 +3 - chr3 84863784 84864000 chr3,84863784,84864000,+,LTR16B,LTR,ERVL,232,461,-2,84863553,84864002 -6 + chr3 84868128 84868156 chr3,84868071,84868156,-,L1ME3D,LINE,L1,-4509,1733,1651,84863562,84869806 +5 - chr3 84869336 84869575 chr3,84869336,84869609,-,AluY,SINE,Alu,-7,304,33,84869329,84869641 +1 - chr3 84869591 84869609 chr3,84869336,84869609,-,AluY,SINE,Alu,-7,304,33,84869329,84869641 +1 - chr3 84881489 84881606 chr3,84881442,84881606,-,MLT1H1,LTR,ERVL-MaLR,-250,305,139,84881192,84881744 +4 - chr3 84884977 84885123 chr3,84884977,84891143,+,L1PA6,LINE,L1,176,6325,-2,84884802,84891145 +4 + chr3 84893301 84893379 chr3,84893301,84893393,+,MLT1H,LTR,ERVL-MaLR,83,174,-315,84893219,84893708 +5 + chr3 85799987 85800423 chr3,85799653,85800435,-,L1PA7,LINE,L1,-5262,1199,417,85794391,85800851 +5 - chr3 85800803 85800865 chr3,85800462,85800865,-,L1PA7,LINE,L1,-6045,416,7,85794417,85800871 +4 - chr3 85805480 85805507 chr3,85805480,85805507,+,(TTTTC)n,Simple_repeat,Simple_repeat,1,27,0,85805480,85805507 -6 + chr3 85992516 85993056 chr3,85992516,85993056,-,Tigger1,DNA,TcMar-Tigger,0,2418,1867,85992516,85994922 +6 - chr3 85993056 85993181 chr3,85993056,85993181,+,AluJr,SINE,Alu,1,125,-187,85993056,85993368 -6 + chr3 85993181 85994714 chr3,85993181,85995082,-,Tigger1,DNA,TcMar-Tigger,-552,1866,6,85992629,85995087 +2 - chr3 86027994 86028007 chr3,86027994,86028215,+,L1PA4,LINE,L1,5936,6155,0,86022059,86028215 -1 + chr3 86266996 86267166 chr3,86266895,86267166,+,L2a,LINE,L2,3130,3426,0,86263766,86267166 -4 + chr3 86267234 86267361 chr3,86267234,86267876,-,L1ME1,LINE,L1,-30,6149,5479,86267204,86273354 +1 - chr3 86481943 86482057 chr3,86480045,86482195,-,L1MA2,LINE,L1,-5417,2148,19,86474628,86482213 -1 - chr3 86496219 86496275 chr3,86496219,86496275,+,Charlie9,DNA,hAT-Charlie,2698,2754,-3,86493522,86496278 +6 + chr3 86496298 86496481 chr3,86496298,86496481,-,MER3,DNA,hAT-Charlie,0,209,1,86496298,86496481 -6 - chr3 86496707 86496852 chr3,86496707,86496852,+,MIR,SINE,MIR,8,169,-93,86496700,86496945 +6 + chr3 86496971 86496996 chr3,86496971,86497018,+,(AT)n,Simple_repeat,Simple_repeat,1,48,0,86496971,86497018 +5 + chr3 87731402 87731413 chr3,87731115,87731413,-,AluSc8,SINE,Alu,-12,299,1,87731103,87731413 +5 - chr3 88059274 88059285 chr3,88059268,88059285,+,(CGG)n,Simple_repeat,Simple_repeat,1,17,0,88059268,88059285 +1 + chr3 88059418 88059468 chr3,88059418,88059468,+,(GGC)n,Simple_repeat,Simple_repeat,1,50,0,88059418,88059468 +6 + chr3 94962959 94963052 chr3,94962959,94963052,-,MLT1H,LTR,ERVL-MaLR,-443,106,6,94962516,94963057 -6 - chr3 94988546 94988679 chr3,94988094,94988789,+,MER76,LTR,ERVL,1,691,0,94988094,94988789 +3 + chr3 94989903 94990029 chr3,94989851,94990029,-,Tigger13a,DNA,TcMar-Tigger,-115,656,466,94989736,94990494 -2 - chr3 95138196 95138315 chr3,95138196,95138438,+,L1ME1,LINE,L1,5764,5997,-182,95132433,95138620 +4 + chr3 95152474 95152509 chr3,95152474,95152649,+,MIRb,SINE,MIR,79,255,-13,95152396,95152662 +5 + chr3 97759523 97759815 chr3,97758967,97759815,-,L2a,LINE,L2,-1073,2346,1393,97757894,97761207 -1 - chr3 97760335 97760389 chr3,97760335,97760389,+,(AT)n,Simple_repeat,Simple_repeat,1,55,0,97760335,97760389 +6 + chr3 97760389 97760433 chr3,97760389,97760433,+,(GTAT)n,Simple_repeat,Simple_repeat,1,47,0,97760389,97760433 +6 + chr3 97760532 97760573 chr3,97760532,97760573,+,(CATATA)n,Simple_repeat,Simple_repeat,1,41,0,97760532,97760573 +6 + chr3 97836986 97837041 chr3,97836945,97837041,-,MIR3,SINE,MIR,-4,204,108,97836941,97837148 +5 - chr3 97867053 97867157 chr3,97867032,97867157,+,AluSp,SINE,Alu,3,123,-190,97867030,97867347 -4 + chr3 98099986 98100150 chr3,98099986,98100150,-,L2,LINE,L2,-546,2873,2697,98099440,98102846 +6 - chr3 98148107 98148134 chr3,98148107,98148203,-,MLT1N2,LTR,ERVL-MaLR,-364,198,100,98147743,98148302 +1 - chr3 98233651 98233676 chr3,98233443,98233849,+,MSTA,LTR,ERVL-MaLR,1,428,0,98233443,98233849 +1 + chr3 98342391 98342429 chr3,98341861,98342658,-,L1M3d,LINE,L1,-2159,3981,3193,98339702,98345850 -3 - chr3 98714330 98714342 chr3,98713794,98714342,-,MER74A,LTR,ERVL,0,558,1,98713794,98714342 +5 - chr3 98715650 98715777 chr3,98715616,98715814,-,MLT1L,LTR,ERVL-MaLR,-113,497,295,98715503,98716108 +3 - chr3 98718419 98718521 chr3,98718369,98718897,+,MLT1D,LTR,ERVL-MaLR,22,505,0,98718348,98718897 -3 + chr3 98982464 98982586 chr3,98982455,98982586,-,MIR3,SINE,MIR,-67,141,9,98982388,98982594 -2 - chr3 98982920 98982948 chr3,98982920,98982948,+,(ATTA)n,Simple_repeat,Simple_repeat,1,28,0,98982920,98982948 +6 + chr3 99500403 99500541 chr3,99500403,99500560,-,MIRb,SINE,MIR,-51,217,40,99500352,99500599 -4 - chr3 99505246 99505268 chr3,99505121,99505268,+,L2c,LINE,L2,3212,3362,-25,99501910,99505293 +2 + chr3 99598064 99598413 chr3,99598015,99598413,-,LTR16,LTR,ERVL,0,438,1,99598015,99598413 -1 - chr3 99621952 99622000 chr3,99621792,99622000,+,MLT1I,LTR,ERVL-MaLR,43,262,-149,99621750,99622149 +2 + chr3 99622097 99622205 chr3,99622097,99622205,-,L2,LINE,L2,-414,3005,2896,99621683,99625100 -6 - chr3 99622477 99622967 chr3,99622477,99622967,-,MLT1D,LTR,ERVL-MaLR,0,505,3,99622477,99622969 -6 - chr3 99623735 99623820 chr3,99623735,99626015,+,L1M1,LINE,L1,17,2299,-5266,99623719,99631281 +5 + chr3 99803640 99803805 chr3,99803640,99803805,+,MIR,SINE,MIR,17,182,-80,99803624,99803885 -6 + chr3 99803837 99803895 chr3,99803837,99803895,-,MSTA,LTR,ERVL-MaLR,0,428,390,99803837,99804284 +6 - chr3 99803895 99804058 chr3,99803895,99804058,-,AluJo,SINE,Alu,-13,299,137,99803882,99804194 +6 - chr3 99804058 99804432 chr3,99804058,99804432,-,MSTA,LTR,ERVL-MaLR,-39,389,1,99804019,99804432 +6 - chr3 99804432 99806058 chr3,99804432,99806064,-,MSTA-int,LTR,ERVL-MaLR,0,1631,1,99804432,99806064 +1 - chr3 100179567 100180827 chr3,100179224,100180827,-,MSTA-int,LTR,ERVL-MaLR,0,1631,2,100179224,100180828 -1 - chr3 100180828 100181202 chr3,100180828,100181202,-,MSTA,LTR,ERVL-MaLR,0,428,1,100180828,100181202 -6 - chr3 100181294 100181732 chr3,100181294,100182199,-,L1MC4a,LINE,L1,0,7882,6963,100181294,100189161 -5 - chr3 101678480 101678742 chr3,101678480,101678742,+,AluSc8,SINE,Alu,1,296,-15,101678480,101678757 +6 + chr3 101823798 101823845 chr3,101823798,101824123,+,AluJb,SINE,Alu,1,305,-7,101823798,101824130 -2 + chr3 101824692 101824741 chr3,101824444,101824741,-,AluJb,SINE,Alu,-13,299,2,101824431,101824742 +4 - chr3 101824783 101824869 chr3,101824783,101824869,+,L3b,LINE,CR1,5063,5142,-90,101819721,101824959 -6 + chr3 101960358 101960731 chr3,101960353,101960847,+,L1PB4,LINE,L1,4897,5218,-925,101955457,101961772 +1 + chr3 101994842 101994897 chr3,101994842,101994906,-,L2b,LINE,L2,0,3375,3313,101994842,101998218 -4 - chr3 101996862 101996887 chr3,101996862,101996887,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,101996862,101996887 +6 + chr3 101997213 101997599 chr3,101997213,101997599,+,MLT1D,LTR,ERVL-MaLR,20,386,-119,101997194,101997718 +6 + chr3 101997600 101997732 chr3,101997600,101997732,-,AluJo,SINE,Alu,-178,134,2,101997422,101997733 -6 - chr3 101997734 101997916 chr3,101997734,101997916,+,MLT1D,LTR,ERVL-MaLR,367,505,0,101997368,101997916 +6 + chr3 106836811 106837130 chr3,106835682,106837130,-,LOR1-int,LTR,ERV1,-6008,2112,639,106829674,106837768 +5 - chr3 106837130 106837164 chr3,106837130,106837164,-,AmnSINE1,SINE,5S-Deu-L2,-493,82,49,106836637,106837212 +6 - chr3 106837164 106837265 chr3,106837164,106837265,-,LOR1-int,LTR,ERV1,-7482,638,537,106829682,106837801 +6 - chr3 106837265 106837311 chr3,106837265,106837311,-,5S,rRNA,rRNA,-74,47,2,106837191,106837312 +6 - chr3 106837311 106837832 chr3,106837311,106837832,-,LOR1-int,LTR,ERV1,-6008,536,3,106831303,106837834 +6 - chr3 106837833 106838325 chr3,106837833,106838325,-,LOR1a,LTR,ERV1,0,497,1,106837833,106838325 +6 - chr3 106838327 106838642 chr3,106838327,106838642,-,AluSc8,SINE,Alu,0,311,1,106838327,106838642 +6 - chr3 106839475 106839509 chr3,106839387,106839509,-,LTR37-int,LTR,ERV1,-3482,578,447,106835905,106839955 +4 - chr3 106839527 106839592 chr3,106839527,106839796,-,LTR37-int,LTR,ERV1,-3660,400,105,106835867,106839900 +2 - chr3 106920966 106921060 chr3,106920965,106922015,+,L1ME3E,LINE,L1,3562,4697,-1449,106917404,106923464 -3 + chr3 106922073 106922093 chr3,106922073,106922752,+,L1ME3E,LINE,L1,5261,6026,-216,106916813,106922968 -2 + chr3 106927835 106927980 chr3,106925056,106927980,-,HERVH-int,LTR,ERV1,-4729,2984,1,106920327,106927980 +4 - chr3 106927982 106927994 chr3,106927982,106928372,-,LTR7,LTR,ERV1,-2,448,1,106927980,106928372 +2 - chr3 107040075 107040116 chr3,107039637,107042591,+,L1PA7,LINE,L1,3500,6467,-2,107036138,107042593 -3 + chr3 107114753 107114843 chr3,107114732,107114987,+,AluSc8,SINE,Alu,3,287,-24,107114730,107115011 -3 + chr3 107129888 107129992 chr3,107129809,107130007,-,MLT1A1,LTR,ERVL-MaLR,0,408,213,107129809,107130219 +1 - chr3 107245138 107245282 chr3,107245122,107245282,-,AluSx,SINE,Alu,-18,294,136,107245104,107245417 -2 - chr3 107245283 107245416 chr3,107245283,107245416,+,L2a,LINE,L2,3234,3369,-57,107242050,107245473 +6 + chr3 107246165 107246728 chr3,107246165,107246728,-,LTR16E2,LTR,ERVL,0,568,3,107246165,107246730 -6 - chr3 107247363 107247432 chr3,107247363,107247432,-,L2c,LINE,L2,-6,3381,3314,107247357,107250745 -6 - chr3 107247432 107247744 chr3,107247432,107247744,+,L1M5,LINE,L1,2651,2969,-3177,107244782,107250921 +6 + chr3 107247837 107248071 chr3,107247837,107248071,+,L1MEc,LINE,L1,166,436,-5964,107247672,107254035 +6 + chr3 107248075 107248327 chr3,107248075,107248327,+,L1MEc,LINE,L1,511,751,-5649,107247565,107253976 +6 + chr3 107248330 107248348 chr3,107248330,107248487,-,LTR16B2,LTR,ERVL,-2,460,312,107248328,107248798 -5 - chr3 107285320 107285456 chr3,107285243,107285456,-,MIR,SINE,MIR,-53,209,1,107285190,107285456 -2 - chr3 107289112 107289133 chr3,107289076,107289133,+,L2c,LINE,L2,3281,3337,-50,107285796,107289183 -5 + chr3 107299943 107300061 chr3,107299943,107300061,+,MER110-int,LTR,ERV1,2646,2764,-1296,107297298,107301357 -6 + chr3 107300092 107300152 chr3,107300092,107301813,+,MER110-int,LTR,ERV1,2727,4469,-178,107297366,107301991 -2 + chr3 107318085 107318232 chr3,107318085,107318232,-,L2a,LINE,L2,-2,3424,3269,107318083,107321500 +6 - chr3 107318232 107318663 chr3,107318232,107318663,+,LTR16,LTR,ERVL,1,438,0,107318232,107318663 -5 + chr3 107320330 107320422 chr3,107320152,107320710,+,ERV3-16A3_I-int,LTR,ERVL,2832,3382,-2285,107317321,107322995 -3 + chr3 107321057 107321276 chr3,107320996,107321440,-,MLT1C,LTR,ERVL-MaLR,-1,466,6,107320995,107321445 +5 - chr3 107322314 107322352 chr3,107322031,107322352,+,LTR16C,LTR,ERVL,93,430,-59,107321939,107322411 -4 + chr3 107322503 107322637 chr3,107322503,107322637,+,L2a,LINE,L2,1314,1454,-1965,107321190,107324602 -6 + chr3 107322718 107322769 chr3,107322718,107323978,+,L2a,LINE,L2,1450,2786,-633,107321269,107324611 -1 + chr3 107324308 107324502 chr3,107324154,107324566,+,L2a,LINE,L2,2787,3219,-207,107321368,107324773 -3 + chr3 107325624 107325691 chr3,107325624,107325896,+,LTR16A1,LTR,ERVL,8,295,-161,107325617,107326057 +4 + chr3 107329623 107329661 chr3,107329623,107329661,+,(TTGTTTC)n,Simple_repeat,Simple_repeat,1,38,0,107329623,107329661 +6 + chr3 107381923 107381943 chr3,107381907,107381943,+,(CCTCT)n,Simple_repeat,Simple_repeat,1,37,0,107381907,107381943 -4 + chr3 107381959 107382042 chr3,107381959,107382042,+,L2,LINE,L2,2120,2200,-1219,107379840,107383261 -6 + chr3 107460673 107460790 chr3,107460636,107460927,-,AluSz,SINE,Alu,-21,291,1,107460615,107460927 -3 - chr3 107462573 107462684 chr3,107462452,107462684,-,MIRb,SINE,MIR,0,268,31,107462452,107462714 -2 - chr3 107462777 107463176 chr3,107462777,107463176,+,L1ME1,LINE,L1,5764,6166,-13,107457014,107463189 +6 + chr3 107840228 107840404 chr3,107840197,107840531,-,MLT1A,LTR,ERVL-MaLR,-16,358,30,107840181,107840560 +5 - chr3 107841303 107841382 chr3,107841274,107841382,+,L2,LINE,L2,2804,2922,-497,107838471,107841879 -5 + chr3 107841414 107841506 chr3,107841414,107841506,+,MIRb,SINE,MIR,164,256,-6,107841251,107841512 -6 + chr3 107841609 107841698 chr3,107841609,107841698,-,Charlie18a,DNA,hAT-Charlie,0,342,247,107841609,107841944 +5 - chr3 107841925 107842039 chr3,107841925,107842039,-,L3b,LINE,CR1,-79,5153,5040,107841846,107847078 +6 - chr3 107849859 107849971 chr3,107849859,107850024,-,MIRc,SINE,MIR,-24,244,79,107849835,107850102 +2 - chr3 107850297 107850351 chr3,107850276,107850457,-,MIR1_Amn,SINE,MIR,-12,218,23,107850264,107850479 +3 - chr3 107856008 107856081 chr3,107855709,107856081,+,MER65B,LTR,ERV1,1,377,-96,107855709,107856177 -4 + chr3 107861906 107862038 chr3,107861905,107862272,+,THE1D,LTR,ERVL-MaLR,1,381,0,107861905,107862272 -1 + chr3 107866234 107866505 chr3,107866234,107866586,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,107866234,107866586 -2 + chr3 107866652 107866753 chr3,107866586,107866878,-,L1MCb,LINE,L1,-5775,976,570,107860811,107867447 +3 - chr3 107867311 107867524 chr3,107866980,107867524,-,L1MCb,LINE,L1,-5489,556,1,107861491,107867524 +5 - chr3 107872326 107872480 chr3,107871960,107872537,-,Tigger3b,DNA,TcMar-Tigger,-279,952,345,107871681,107872881 +3 - chr3 107872968 107873026 chr3,107872865,107873051,+,FAM,SINE,Alu,1,181,-4,107872865,107873055 -1 + chr3 107876130 107876186 chr3,107876077,107876726,+,L1MB8,LINE,L1,5479,6121,-57,107870599,107876783 -3 + chr3 107876435 107876531 chr3,107876077,107876726,+,L1MB8,LINE,L1,5479,6121,-57,107870599,107876783 -3 + chr3 107877902 107878093 chr3,107877786,107878371,+,MLT1G1,LTR,ERVL-MaLR,3,579,0,107877784,107878371 -1 + chr3 107883248 107883306 chr3,107882851,107883323,-,LTR16B1,LTR,ERVL,-11,469,13,107882840,107883335 -1 - chr3 107928124 107928169 chr3,107928124,107928169,+,(AACA)n,Simple_repeat,Simple_repeat,1,46,0,107928124,107928169 +6 + chr3 108038305 108038445 chr3,108038305,108038477,-,MIRb,SINE,MIR,-8,260,50,108038297,108038526 +1 - chr3 108136329 108136946 chr3,108136329,108136946,-,MER51A,LTR,ERV1,0,634,1,108136329,108136946 -6 - chr3 108137402 108137434 chr3,108137402,108137434,+,(G)n,Simple_repeat,Simple_repeat,1,32,0,108137402,108137434 +6 + chr3 108138096 108138120 chr3,108138096,108138120,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,108138096,108138120 +6 + chr3 108138120 108138277 chr3,108138120,108138277,+,Tigger1,DNA,TcMar-Tigger,5,157,-2261,108138116,108140538 +6 + chr3 108138269 108138473 chr3,108138269,108138473,+,Tigger1,DNA,TcMar-Tigger,2205,2418,0,108136065,108138473 +6 + chr3 109109764 109109849 chr3,109109644,109110024,+,LTR79,LTR,ERVL,78,517,-10,109109567,109110034 +3 + chr3 109109969 109110024 chr3,109109644,109110024,+,LTR79,LTR,ERVL,78,517,-10,109109567,109110034 +2 + chr3 109110098 109110290 chr3,109110098,109110290,-,MamSINE1,SINE,tRNA-RTE,-61,229,9,109110037,109110298 -6 - chr3 109146287 109146319 chr3,109146202,109146319,-,MER96,DNA,hAT-Tip100,0,175,2,109146202,109146320 -1 - chr3 109148541 109148832 chr3,109148541,109148832,+,L2c,LINE,L2,3086,3384,-3,109145456,109148835 +6 + chr3 109149169 109149196 chr3,109149169,109149196,+,(TTCT)n,Simple_repeat,Simple_repeat,1,27,0,109149169,109149196 +6 + chr3 109150102 109150126 chr3,109150102,109150126,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,109150102,109150126 +5 + chr3 109150474 109150514 chr3,109150474,109150561,-,Charlie16a,DNA,hAT-Charlie,-105,237,139,109150369,109150699 -5 - chr3 109176438 109176803 chr3,109176401,109176803,-,LTR7,LTR,ERV1,-2,448,1,109176399,109176803 +5 - chr3 109176803 109176939 chr3,109176803,109176939,-,MER58C,DNA,hAT-Charlie,-37,178,26,109176766,109176964 +6 - chr3 109183021 109183295 chr3,109182988,109183295,-,AluSx1,SINE,Alu,0,312,1,109182988,109183295 -2 - chr3 109183295 109183414 chr3,109183295,109183414,+,L2a,LINE,L2,3280,3424,-2,109180016,109183416 +6 + chr3 109183436 109183467 chr3,109183436,109183467,+,(ACA)n,Simple_repeat,Simple_repeat,1,31,0,109183436,109183467 +6 + chr3 109184190 109184399 chr3,109184190,109184399,-,MIR,SINE,MIR,0,262,26,109184190,109184424 -6 - chr3 109184412 109184441 chr3,109184412,109184441,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,30,0,109184412,109184441 +6 + chr3 109184467 109184949 chr3,109184467,109184949,-,L1ME1,LINE,L1,-54,6125,5586,109184413,109190534 -6 - chr3 109417733 109417842 chr3,109417720,109417842,-,FLAM_A,SINE,Alu,-16,126,4,109417704,109417845 -2 - chr3 109417859 109417928 chr3,109417859,109417928,+,L2a,LINE,L2,3358,3426,0,109414502,109417928 +6 + chr3 109418017 109418107 chr3,109418017,109418107,-,L1MC4,LINE,L1,-10,8032,7950,109418007,109426056 -6 - chr3 109418215 109418532 chr3,109418215,109418532,-,AluSz6,SINE,Alu,-2,310,1,109418213,109418532 -6 - chr3 109418542 109418867 chr3,109418542,109418867,-,L1MC4,LINE,L1,0,8042,7711,109418542,109426577 -6 - chr3 109418867 109419005 chr3,109418867,109419005,+,L1PA7,LINE,L1,6011,6148,-6,109412857,109419011 +6 + chr3 109419005 109419016 chr3,109419005,109419016,-,L1MC4,LINE,L1,-332,7710,7701,109418673,109426716 -6 - chr3 109459883 109459928 chr3,109459882,109460060,-,L1ME3E,LINE,L1,-222,6020,5857,109459660,109465916 -3 - chr3 109476723 109476762 chr3,109476150,109476948,-,L1M4,LINE,L1,-968,4733,3927,109475182,109480874 -3 - chr3 109494186 109494661 chr3,109494186,109494661,-,LTR40a,LTR,ERVL,0,519,1,109494186,109494661 -6 - chr3 109494872 109495167 chr3,109494872,109495188,+,AluSg4,SINE,Alu,1,304,-6,109494872,109495194 +5 + chr3 109648107 109648135 chr3,109647588,109653403,+,L1PA7,LINE,L1,2,5806,-663,109647587,109654066 +1 + chr3 110529001 110529168 chr3,110528901,110529449,+,MLT1F2,LTR,ERVL-MaLR,1,558,-2,110528901,110529451 -3 + chr3 110529330 110529449 chr3,110528901,110529449,+,MLT1F2,LTR,ERVL-MaLR,1,558,-2,110528901,110529451 -4 + chr3 110888495 110888530 chr3,110888495,110888530,+,(ATA)n,Simple_repeat,Simple_repeat,1,37,0,110888495,110888530 -6 + chr3 110888814 110888926 chr3,110888814,110890548,+,L1HS,LINE,L1,3,1728,-4304,110888812,110894852 -2 + chr3 110893267 110893304 chr3,110893267,110893304,+,(TTCTCC)n,Simple_repeat,Simple_repeat,1,37,0,110893267,110893304 -6 + chr3 111045466 111045655 chr3,111045466,111045655,-,MIRb,SINE,MIR,-52,216,9,111045414,111045663 +6 - chr3 111046902 111046946 chr3,111046894,111046946,+,(TTTACTG)n,Simple_repeat,Simple_repeat,1,55,0,111046894,111046946 -5 + chr3 111052633 111052659 chr3,111052633,111052683,-,LTR33B,LTR,ERVL,-408,95,46,111052225,111052728 +2 - chr3 111069338 111069471 chr3,111069338,111069496,+,MIR1_Amn,SINE,MIR,73,230,0,111069266,111069496 -1 + chr3 111496888 111497019 chr3,111496858,111497019,+,MER54B,LTR,ERVL,1,181,-612,111496858,111497631 -4 + chr3 111497019 111497095 chr3,111497019,111497802,-,LTR17,LTR,ERV1,0,780,1,111497019,111497802 +1 - chr3 112133544 112133827 chr3,112133544,112133827,+,L1ME1,LINE,L1,5269,5578,-601,112128276,112134428 +6 + chr3 112133827 112134565 chr3,112133827,112134565,+,LTR1F2,LTR,ERV1,1,739,0,112133827,112134565 +6 + chr3 112134565 112135124 chr3,112134565,112135124,+,L1ME1,LINE,L1,5579,6160,-19,112128987,112135143 +6 + chr3 112135229 112135328 chr3,112135229,112135328,-,L2a,LINE,L2,-1,3425,3313,112135228,112138640 -6 - chr3 112302478 112302714 chr3,112302478,112303209,+,HERV3-int,LTR,ERV1,1,720,-8081,112302478,112311290 +1 + chr3 112307121 112307198 chr3,112305238,112307741,+,HERV3-int,LTR,ERV1,4240,6746,-1680,112300999,112309421 +1 + chr3 112332199 112332311 chr3,112332199,112332311,+,GA-rich,Low_complexity,Low_complexity,1,110,0,112332199,112332311 +6 + chr3 112332311 112332606 chr3,112332311,112332606,+,AluY,SINE,Alu,1,295,-16,112332311,112332622 +6 + chr3 112332606 112332639 chr3,112332606,112332639,+,GA-rich,Low_complexity,Low_complexity,111,143,0,112332496,112332639 +6 + chr3 112396670 112397119 chr3,112396670,112397119,+,MER4A1,LTR,ERV1,1,459,-13,112396670,112397132 -6 + chr3 112397189 112397477 chr3,112397189,112397477,+,AluY,SINE,Alu,1,288,-23,112397189,112397500 -6 + chr3 112409074 112409088 chr3,112408890,112409088,-,L2c,LINE,L2,-57,3330,3131,112408833,112412218 +4 - chr3 112525816 112526030 chr3,112525816,112526030,+,AluSq10,SINE,Alu,1,224,-89,112525816,112526119 -6 + chr3 112526030 112528142 chr3,112526030,112530054,+,SATR2,Satellite,Satellite,1,3449,0,112526030,112530054 -1 + chr3 112596794 112597210 chr3,112596775,112597210,-,LTR108a_Mam,LTR,ERVL,-38,473,35,112596737,112597244 +5 - chr3 112597853 112597978 chr3,112597853,112597978,+,L2c,LINE,L2,3247,3373,-14,112594607,112597992 -6 + chr3 112598332 112598408 chr3,112598332,112598408,+,MamTip2,DNA,hAT-Tip100,191,277,-28,112598142,112598436 -6 + chr3 112599063 112599235 chr3,112599063,112599235,-,MIR3,SINE,MIR,-11,197,12,112599052,112599246 +6 - chr3 112599475 112599516 chr3,112599475,112599516,+,GA-rich,Low_complexity,Low_complexity,1,41,0,112599475,112599516 -6 + chr3 112600510 112600806 chr3,112600510,112600806,-,AluJb,SINE,Alu,-30,282,2,112600480,112600807 +6 - chr3 112601091 112601156 chr3,112601091,112601156,+,MIR3,SINE,MIR,98,171,-37,112600994,112601193 -6 + chr3 112601535 112601707 chr3,112601535,112601707,+,AluJb,SINE,Alu,137,312,0,112601399,112601707 -6 + chr3 112736447 112736696 chr3,112736346,112737013,-,LTR8,LTR,ERV1,0,691,1,112736346,112737013 +5 - chr3 112738678 112738733 chr3,112738586,112738733,+,MIRb,SINE,MIR,76,217,-51,112738511,112738784 -4 + chr3 112740423 112740730 chr3,112740423,112740730,-,AluSx1,SINE,Alu,-5,307,1,112740418,112740730 +6 - chr3 112802611 112802648 chr3,112802611,112802729,-,MIR3,SINE,MIR,-4,204,85,112802607,112802813 -4 - chr3 113058946 113059067 chr3,113058790,113059093,+,AluSz,SINE,Alu,2,305,-7,113058789,113059100 -3 + chr3 113061787 113062010 chr3,113061765,113062813,-,L1MC4,LINE,L1,-411,7631,6461,113061354,113069273 -3 - chr3 113063260 113063443 chr3,113063260,113063631,-,MLT1A0,LTR,ERVL-MaLR,0,365,2,113063260,113063632 +1 - chr3 113089007 113089024 chr3,113089007,113089234,-,AluYc,SINE,Alu,-11,288,64,113088996,113089297 -5 - chr3 113110102 113110378 chr3,113110074,113110378,-,AluSx1,SINE,Alu,0,312,1,113110074,113110378 -2 - chr3 113142350 113142475 chr3,113142189,113142475,-,AluSg7,SINE,Alu,-32,277,1,113142157,113142475 +5 - chr3 113142486 113142920 chr3,113142486,113142920,+,L3,LINE,CR1,3632,4070,-29,113138855,113142949 -6 + chr3 113144301 113144335 chr3,113144301,113144448,+,L3,LINE,CR1,2918,3077,-1022,113141384,113145470 -2 + chr3 113153273 113153323 chr3,113153273,113153323,-,MIR3,SINE,MIR,-76,132,74,113153197,113153396 +6 - chr3 113158322 113158411 chr3,113158278,113158722,+,MLT1J,LTR,ERVL-MaLR,32,510,-2,113158247,113158724 +1 + chr3 113158536 113158631 chr3,113158278,113158722,+,MLT1J,LTR,ERVL-MaLR,32,510,-2,113158247,113158724 +1 + chr3 113165127 113165206 chr3,113165083,113165213,-,L3,LINE,CR1,-8,4091,3959,113165075,113169171 +3 - chr3 113167768 113167819 chr3,113167768,113167879,-,MER5A1,DNA,hAT-Charlie,-3,163,53,113167765,113167931 +1 - chr3 113183053 113183301 chr3,113182530,113183359,-,MER6,DNA,TcMar-Tigger,-6,859,20,113182524,113183378 -5 - chr3 113428918 113428998 chr3,113428918,113428998,-,L1M7,LINE,L1,-5745,473,390,113423173,113429387 -6 - chr3 113589783 113589833 chr3,113589529,113589833,-,AluSx,SINE,Alu,-8,304,1,113589521,113589833 +4 - chr3 113589857 113590189 chr3,113589857,113590250,-,L2a,LINE,L2,-2,3424,2994,113589855,113593243 +1 - chr3 113747006 113747027 chr3,113747006,113747027,+,(C)n,Simple_repeat,Simple_repeat,1,21,0,113747006,113747027 -6 + chr3 114233342 114233446 chr3,114233315,114233446,-,MamGypLTR3,LTR,Gypsy,-773,208,62,114232542,114233507 -2 - chr3 114234186 114234492 chr3,114234186,114234492,+,AluSc8,SINE,Alu,2,311,0,114234185,114234492 +6 + chr3 114234832 114235116 chr3,114234832,114235116,-,L1ME3G,LINE,L1,-284,640,331,114234548,114235446 -6 - chr3 114235168 114235199 chr3,114235168,114235199,+,(TGTTT)n,Simple_repeat,Simple_repeat,1,32,0,114235168,114235199 +6 + chr3 114314782 114314810 chr3,114314782,114314810,+,(AAT)n,Simple_repeat,Simple_repeat,1,30,0,114314782,114314810 -6 + chr3 114315458 114315507 chr3,114315458,114315507,+,(TGTA)n,Simple_repeat,Simple_repeat,1,49,0,114315458,114315507 -6 + chr3 114315568 114315606 chr3,114315568,114315606,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,114315568,114315606 -6 + chr3 114315838 114315876 chr3,114315838,114315876,+,A-rich,Low_complexity,Low_complexity,1,38,0,114315838,114315876 -6 + chr3 114315953 114315990 chr3,114315953,114315990,+,(T)n,Simple_repeat,Simple_repeat,1,37,0,114315953,114315990 -6 + chr3 114388936 114388953 chr3,114388936,114388953,+,(TG)n,Simple_repeat,Simple_repeat,1,17,0,114388936,114388953 +6 + chr3 114520046 114520077 chr3,114520046,114520077,+,(AAATTT)n,Simple_repeat,Simple_repeat,1,31,0,114520046,114520077 +6 + chr3 114520080 114520132 chr3,114520080,114520135,+,MIR,SINE,MIR,86,140,-122,114519995,114520257 +5 + chr3 114687572 114687609 chr3,114687572,114687609,+,A-rich,Low_complexity,Low_complexity,1,68,0,114687572,114687609 +5 + chr3 114873177 114873196 chr3,114873177,114873288,+,L2a,LINE,L2,3310,3409,-17,114869868,114873305 +4 + chr3 114876345 114876473 chr3,114876345,114876473,+,AluJr4,SINE,Alu,179,306,-6,114876167,114876479 +2 + chr3 115100423 115100474 chr3,115100327,115100474,+,GA-rich,Low_complexity,Low_complexity,1,151,0,115100327,115100474 +1 + chr3 115102687 115102981 chr3,115102687,115102981,+,AluSg,SINE,Alu,1,295,-15,115102687,115102996 +6 + chr3 115102984 115103002 chr3,115102984,115103002,+,(GAA)n,Simple_repeat,Simple_repeat,1,18,0,115102984,115103002 +6 + chr3 115252064 115252118 chr3,115251908,115252345,-,MLT1F,LTR,ERVL-MaLR,0,548,1,115251908,115252345 -3 - chr3 115262794 115262930 chr3,115262680,115263287,+,L1M6,LINE,L1,48,715,-5781,115262633,115269068 +3 + chr3 115285179 115285221 chr3,115285179,115285221,-,AmnSINE1,SINE,5S-Deu-L2,-330,245,204,115284849,115285424 -6 - chr3 115661161 115661219 chr3,115661161,115661219,+,(CAGCTG)n,Simple_repeat,Simple_repeat,1,63,0,115661161,115661219 +6 + chr3 116360024 116360093 chr3,116359999,116366026,+,L1HS,LINE,L1,127,6155,0,116359873,116366026 +1 + chr3 116369831 116370046 chr3,116369639,116370046,+,MLT1B,LTR,ERVL-MaLR,1,390,0,116369639,116370046 +2 + chr3 116709300 116709578 chr3,116709300,116709578,-,MER102b,DNA,hAT-Charlie,-59,282,2,116709241,116709579 -1 - chr3 116712449 116712668 chr3,116712449,116712668,+,CR1-L3A_Croc,LINE,CR1,3766,3916,-372,116708684,116713040 +5 + chr3 116716732 116717266 chr3,116716732,116717266,-,L3,LINE,CR1,-11,4088,3489,116716721,116720754 -6 - chr3 116723385 116723417 chr3,116723385,116723417,+,GA-rich,Low_complexity,Low_complexity,1,34,0,116723385,116723417 +6 + chr3 116921431 116921560 chr3,116921325,116921598,+,UCON78,DNA,DNA,142,418,-25,116921184,116921623 +1 + chr3 116930938 116931102 chr3,116930938,116931102,+,MER5A1,DNA,hAT-Charlie,1,164,-2,116930938,116931104 +6 + chr3 116931631 116931715 chr3,116931631,116931715,-,L3,LINE,CR1,-1,4098,4010,116931630,116935724 -6 - chr3 116932081 116932106 chr3,116932081,116932106,+,(TAT)n,Simple_repeat,Simple_repeat,1,26,0,116932081,116932106 +6 + chr3 117680939 117680972 chr3,117680880,117681155,-,Charlie16a,DNA,hAT-Charlie,0,342,65,117680880,117681219 +3 - chr3 117689957 117690078 chr3,117689957,117690258,+,AluY,SINE,Alu,1,296,-15,117689957,117690273 -2 + chr3 118004819 118004856 chr3,118004549,118004856,-,Tigger13a,DNA,TcMar-Tigger,-297,474,149,118004252,118005004 +5 - chr3 118074524 118074623 chr3,118073351,118074917,-,L1MA3,LINE,L1,-4222,3343,1768,118069129,118076684 +3 - chr3 118087360 118087441 chr3,118087293,118087441,-,MIR3,SINE,MIR,-36,172,15,118087257,118087455 +4 - chr3 118087442 118087500 chr3,118087442,118088057,+,L3,LINE,CR1,3401,4074,-25,118084042,118088082 -2 + chr3 118508508 118508692 chr3,118508508,118508769,+,MLT1K,LTR,ERVL-MaLR,196,451,-144,118508313,118508913 -2 + chr3 118943073 118943186 chr3,118942695,118943326,+,MamGypLTR1a,LTR,Gypsy,31,763,-21,118942665,118943347 +1 + chr3 118944862 118944892 chr3,118944757,118944892,-,MIR,SINE,MIR,-13,249,102,118944744,118944993 -2 - chr3 118947595 118948021 chr3,118947595,118948021,-,L1ME3A,LINE,L1,-18,6155,5731,118947577,118953751 -6 - chr3 118948004 118948071 chr3,118948004,118948071,+,L1ME3A,LINE,L1,5577,5648,-514,118942428,118948585 +6 + chr3 118948107 118948151 chr3,118948107,118948151,+,MIRc,SINE,MIR,211,258,-10,118947897,118948161 +6 + chr3 119235077 119235140 chr3,119235077,119235199,+,L1MC5a,LINE,L1,2636,2761,-16,119232442,119235215 +4 + chr3 119314293 119314520 chr3,119314049,119314520,+,L2c,LINE,L2,2925,3384,-3,119311125,119314523 -5 + chr3 119314683 119314769 chr3,119314683,119314795,+,MIR3,SINE,MIR,43,162,-46,119314641,119314841 -2 + chr3 119497721 119497848 chr3,119497721,119497848,-,LTR90B,LTR,LTR,0,796,657,119497721,119498504 +6 - chr3 119498101 119498181 chr3,119498101,119498269,-,AluSq,SINE,Alu,-14,299,132,119498087,119498400 +1 - chr3 119579286 119579354 chr3,119579286,119579354,-,MIR,SINE,MIR,-65,197,127,119579221,119579480 +6 - chr3 119750206 119750345 chr3,119750170,119750345,+,MIR,SINE,MIR,69,260,-2,119750102,119750347 -4 + chr3 120098392 120098643 chr3,120098367,120098643,-,AluJb,SINE,Alu,-13,299,1,120098354,120098643 -2 - chr3 120099006 120099024 chr3,120099006,120099024,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,120099006,120099024 +6 + chr3 120104776 120104791 chr3,120104674,120104791,-,MIRc,SINE,MIR,-20,248,121,120104654,120104911 -2 - chr3 120104795 120104845 chr3,120104795,120105089,+,AluJb,SINE,Alu,2,306,-6,120104794,120105095 +4 + chr3 120133575 120133672 chr3,120133510,120133825,-,AluSx,SINE,Alu,-2,310,5,120133508,120133829 -3 - chr3 120136328 120136783 chr3,120136135,120136888,+,L1MA1,LINE,L1,5516,6301,-1,120130620,120136889 +5 + chr3 120833936 120834094 chr3,120833936,120834094,+,L2c,LINE,L2,3246,3387,0,120830691,120834094 -2 + chr3 122420989 122421099 chr3,122420983,122421099,-,AluSz,SINE,Alu,-192,120,3,122420791,122421101 -2 - chr3 122432799 122433078 chr3,122432799,122433078,+,AluSx,SINE,Alu,2,284,-28,122432798,122433106 +6 + chr3 122442727 122442815 chr3,122442654,122442815,-,L3b,LINE,CR1,-321,4911,4733,122442333,122447547 -2 - chr3 122442829 122443180 chr3,122442829,122443535,+,L1PA6,LINE,L1,1,702,-5482,122442829,122449017 +5 + chr3 122886941 122887070 chr3,122886770,122887070,-,AluJr4,SINE,Alu,-6,306,1,122886764,122887070 -1 - chr3 122887123 122887277 chr3,122887123,122887277,+,MIR3,SINE,MIR,6,167,-41,122887118,122887318 +6 + chr3 122887578 122887885 chr3,122887578,122887885,-,AluSz6,SINE,Alu,-10,302,1,122887568,122887885 -6 - chr3 122888219 122888403 chr3,122888219,122888403,-,MamTip2,DNA,hAT-Tip100,-59,246,46,122888160,122888448 -6 - chr3 122889533 122889652 chr3,122889533,122889652,-,L2a,LINE,L2,0,3426,3299,122889533,122892950 -6 - chr3 122890211 122890337 chr3,122890211,122890337,-,Plat_L3,LINE,CR1,-34,3552,3414,122890177,122893750 -6 - chr3 123277398 123277595 chr3,123277398,123277595,-,MIR,SINE,MIR,-27,235,6,123277371,123277600 -6 - chr3 123283661 123283704 chr3,123283661,123283704,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,123283661,123283704 +6 + chr3 123630496 123630610 chr3,123630377,123630610,-,MIR,SINE,MIR,-11,251,1,123630366,123630610 -2 - chr3 123630621 123630680 chr3,123630621,123630680,+,MIRb,SINE,MIR,180,241,-27,123630442,123630707 +6 + chr3 124725463 124725515 chr3,124725463,124725515,+,(TATATG)n,Simple_repeat,Simple_repeat,1,56,0,124725463,124725515 +6 + chr3 124726297 124726325 chr3,124726297,124726327,+,(CTATA)n,Simple_repeat,Simple_repeat,1,31,0,124726297,124726327 +5 + chr3 124748774 124748896 chr3,124748774,124748896,+,MamGypLTR2b,LTR,Gypsy,294,420,-502,124748481,124749398 +6 + chr3 124787548 124787621 chr3,124787548,124787621,+,L2a,LINE,L2,3355,3426,0,124784194,124787621 +6 + chr3 124793033 124793104 chr3,124793033,124793255,-,MIRb,SINE,MIR,-10,258,17,124793023,124793271 +1 - chr3 125774714 125774774 chr3,125774578,125774774,+,MER58A,DNA,hAT-Charlie,9,210,-14,125774570,125774788 +1 + chr3 125827339 125827455 chr3,125827339,125827493,-,L2b,LINE,L2,0,3426,3273,125827339,125830765 +5 - chr3 125853326 125853647 chr3,125849810,125855962,+,L1PA4,LINE,L1,1,6155,0,125849810,125855962 -1 + chr3 125860691 125860784 chr3,125860691,125860784,+,MER91C,DNA,hAT-Tip100,24,125,-15,125860668,125860799 -6 + chr3 125860938 125861121 chr3,125860938,125861152,-,MER20,DNA,hAT-Charlie,0,219,7,125860938,125861158 +2 - chr3 125861704 125861821 chr3,125861537,125861852,+,AluJo,SINE,Alu,1,304,-8,125861537,125861860 -1 + chr3 125862574 125862751 chr3,125862458,125862751,-,L1MC5a,LINE,L1,-6,2771,2493,125862452,125865243 +5 - chr3 125862815 125862968 chr3,125862815,125862968,-,MER5A1,DNA,hAT-Charlie,0,166,15,125862815,125862982 +5 - chr3 125866083 125866202 chr3,125864096,125866993,+,HERVH-int,LTR,ERV1,1,2984,-4729,125864096,125871722 -1 + chr3 125875074 125875166 chr3,125875052,125875184,+,FLAM_A,SINE,Alu,1,132,-10,125875052,125875194 -3 + chr3 125887818 125887852 chr3,125887818,125887852,+,(TG)n,Simple_repeat,Simple_repeat,1,34,0,125887818,125887852 -6 + chr3 125888426 125888728 chr3,125888426,125888728,+,AluSx3,SINE,Alu,1,302,-9,125888426,125888737 -6 + chr3 125888784 125889034 chr3,125888784,125889034,-,L2a,LINE,L2,0,3426,3150,125888784,125892183 +1 - chr3 125908005 125908078 chr3,125907804,125908078,-,AluSz,SINE,Alu,-36,276,6,125907768,125908083 +5 - chr3 125908437 125908560 chr3,125908280,125908585,+,AluJr,SINE,Alu,2,299,-13,125908279,125908598 -3 + chr3 125910220 125910272 chr3,125910077,125910349,+,AluJr,SINE,Alu,1,305,-7,125910077,125910356 -1 + chr3 126057918 126058098 chr3,126057917,126058098,+,MLT1G3,LTR,ERVL-MaLR,147,326,-269,126057771,126058367 +2 + chr3 126058147 126058228 chr3,126058147,126058272,+,MLT1G3,LTR,ERVL-MaLR,444,574,-5,126057704,126058277 +5 + chr3 126085359 126085370 chr3,126084797,126085370,+,MER4E,LTR,ERV1,19,756,-10,126084779,126085380 +2 + chr3 126085375 126085452 chr3,126085375,126086384,+,MER4B-int,LTR,ERV1,1,1070,-5688,126085375,126092072 +5 + chr3 126092565 126092606 chr3,126092094,126092606,+,MER9a2,LTR,ERVK,1,513,0,126092094,126092606 +2 + chr3 126092606 126092721 chr3,126092606,126093199,+,HERVK9-int,LTR,ERVK,1,604,-5417,126092606,126098616 +4 + chr3 126095189 126095349 chr3,126094940,126096369,+,HERVK9-int,LTR,ERVK,4595,6021,0,126090346,126096369 +5 + chr3 126103911 126103965 chr3,126103911,126104045,-,MIRc,SINE,MIR,-63,205,52,126103848,126104096 -4 - chr3 126207255 126207544 chr3,126207150,126207656,-,MLT1G3,LTR,ERVL-MaLR,-29,460,13,126207121,126207668 -1 - chr3 126208051 126208066 chr3,126208051,126208246,+,L1MD,LINE,L1,4074,4281,-1865,126203978,126210111 +4 + chr3 126208178 126208237 chr3,126208051,126208246,+,L1MD,LINE,L1,4074,4281,-1865,126203978,126210111 +3 + chr3 126209118 126209280 chr3,126209118,126209280,-,MIRb,SINE,MIR,-70,198,37,126209048,126209316 -6 - chr3 126210083 126210169 chr3,126210083,126210272,-,MER113,DNA,hAT-Charlie,-1,520,311,126210082,126210582 -5 - chr3 126288156 126288280 chr3,126288156,126288280,+,MER113A,DNA,hAT-Charlie,98,241,-73,126288059,126288353 +6 + chr3 126288867 126288937 chr3,126288861,126288981,+,L1ME3G,LINE,L1,4573,4696,-1450,126284289,126290431 -5 + chr3 126294007 126294024 chr3,126294007,126294488,-,L1MC4a,LINE,L1,-303,7692,7092,126293704,126301579 +1 - chr3 126393238 126393293 chr3,126393238,126393318,+,MIR,SINE,MIR,168,247,-15,126393071,126393333 -2 + chr3 126393579 126393653 chr3,126393579,126393668,-,L2,LINE,L2,-468,2951,2858,126393111,126396525 +2 - chr3 126394363 126394538 chr3,126394363,126394538,-,MER5A,DNA,hAT-Charlie,0,189,3,126394363,126394540 +1 - chr3 126432796 126432858 chr3,126432328,126432858,+,L1MB7,LINE,L1,5628,6179,-5,126426701,126432863 -5 + chr3 126433652 126433718 chr3,126433652,126433718,-,L2a,LINE,L2,-22,3404,3339,126433630,126437056 +6 - chr3 126973159 126973232 chr3,126973159,126973232,+,MLT1G,LTR,ERVL-MaLR,204,276,-279,126972956,126973511 +6 + chr3 126973319 126973469 chr3,126973319,126973469,+,MLT1G,LTR,ERVL-MaLR,429,584,-7,126972891,126973476 +6 + chr3 126973898 126974297 chr3,126973898,126974297,-,L1MD2,LINE,L1,-2,6357,5888,126973896,126980184 -6 - chr3 126974266 126975833 chr3,126974266,126975833,-,L1MDa,LINE,L1,-4073,2560,915,126970193,126976747 -6 - chr3 126976235 126976305 chr3,126976235,126976305,+,MER102a,DNA,hAT-Charlie,262,328,-2,126975974,126976307 +6 + chr3 127322318 127322360 chr3,127322318,127322360,-,MLT2C1,LTR,ERVL,0,563,522,127322318,127322881 +6 - chr3 127322361 127322400 chr3,127322361,127322400,+,(GT)n,Simple_repeat,Simple_repeat,1,39,0,127322361,127322400 -6 + chr3 127322400 127322443 chr3,127322400,127322443,+,(AG)n,Simple_repeat,Simple_repeat,1,43,0,127322400,127322443 -6 + chr3 127322504 127322727 chr3,127322504,127322823,-,MLT2C1,LTR,ERVL,-51,346,40,127322453,127322862 +2 - chr3 127355890 127355940 chr3,127355782,127356123,-,THE1C,LTR,ERVL-MaLR,0,375,1,127355782,127356123 +3 - chr3 127356251 127356283 chr3,127356123,127357729,-,THE1C-int,LTR,ERVL-MaLR,0,1580,1,127356123,127357729 +3 - chr3 127480804 127480935 chr3,127480804,127480935,+,MIR,SINE,MIR,48,185,-77,127480757,127481012 -6 + chr3 127489553 127489584 chr3,127489518,127489588,-,L2b,LINE,L2,-173,3202,3130,127489345,127492717 -1 - chr3 127489703 127489794 chr3,127489703,127489865,+,MLT1B,LTR,ERVL-MaLR,2,172,-218,127489702,127490083 +4 + chr3 127490077 127490200 chr3,127490063,127490254,+,MLT1B,LTR,ERVL-MaLR,184,388,-2,127489880,127490256 +3 + chr3 127490358 127490401 chr3,127490254,127490401,-,MIRc,SINE,MIR,-75,193,37,127490179,127490437 -2 - chr3 127499685 127499730 chr3,127499510,127500000,+,L1MEg,LINE,L1,1,528,-5556,127499510,127505556 -3 + chr3 127532385 127532443 chr3,127532303,127532720,-,MSTB2,LTR,ERVL-MaLR,0,457,16,127532303,127532735 +3 - chr3 127534117 127534406 chr3,127534105,127534602,+,L1MD3,LINE,L1,7425,7987,-8,127526681,127534610 -3 + chr3 127535299 127535405 chr3,127535299,127535405,-,Charlie7,DNA,hAT-Charlie,-2444,168,58,127532855,127535462 +6 - chr3 127535372 127535410 chr3,127535372,127535410,-,Charlie7a,DNA,hAT-Charlie,-182,90,52,127535190,127535461 +6 - chr3 128463995 128464062 chr3,128463995,128464062,-,MIR3,SINE,MIR,-87,121,48,128463908,128464109 -6 - chr3 128471035 128471203 chr3,128471035,128471203,-,MamRep4096,DNA,hAT?,-41,385,212,128470994,128471414 -6 - chr3 128471212 128471402 chr3,128471212,128471402,+,MER20,DNA,hAT-Charlie,1,213,-6,128471212,128471408 +6 + chr3 128471407 128471573 chr3,128471407,128471573,-,MamRep4096,DNA,hAT?,-220,206,30,128471187,128471602 -6 - chr3 128471604 128471658 chr3,128471604,128471658,+,MIRb,SINE,MIR,13,65,-203,128471592,128471861 +6 + chr3 128471818 128472317 chr3,128471818,128472405,+,L1ME3Cz,LINE,L1,173,866,-131,128471646,128472536 +5 + chr3 128501609 128501765 chr3,128501433,128501765,+,L1ME3Cz,LINE,L1,228,472,-525,128501206,128502290 +2 + chr3 128501776 128501969 chr3,128501776,128501969,+,AluJo,SINE,Alu,85,309,-3,128501692,128501972 +6 + chr3 128502219 128502348 chr3,128502219,128502815,+,L1M5,LINE,L1,4475,5083,-1063,128497745,128503878 +5 + chr3 128859716 128860156 chr3,128859679,128860156,-,LTR4,LTR,ERV1,0,596,98,128859679,128860253 +5 - chr3 128860380 128860526 chr3,128860380,128860620,+,L1MD1,LINE,L1,5991,6223,-19,128854390,128860639 -1 + chr3 128861339 128861384 chr3,128861339,128861384,+,(CA)n,Simple_repeat,Simple_repeat,1,47,0,128861339,128861384 -6 + chr3 128861502 128861620 chr3,128861502,128861620,-,MIRc,SINE,MIR,-134,134,4,128861368,128861623 +5 - chr3 128867814 128867829 chr3,128867789,128867829,-,MIR,SINE,MIR,-144,118,79,128867645,128867907 +4 - chr3 128867836 128867926 chr3,128867836,128867962,+,AluJb,SINE,Alu,184,311,-1,128867653,128867963 -2 + chr3 128871407 128871540 chr3,128871407,128871719,+,AluY,SINE,Alu,1,299,-12,128871407,128871731 -1 + chr3 128914833 128914982 chr3,128914790,128914982,-,MIR3,SINE,MIR,-1,207,4,128914789,128914985 +5 - chr3 129123439 129123456 chr3,129123397,129123456,-,L3,LINE,CR1,-3575,524,466,129119822,129123921 -1 - chr3 129123860 129123991 chr3,129123860,129123991,+,L1MB7,LINE,L1,6034,6173,-11,129117827,129124002 +6 + chr3 129163813 129163927 chr3,129163813,129163927,+,MLT1D,LTR,ERVL-MaLR,5,125,-380,129163809,129164307 -6 + chr3 129163927 129163940 chr3,129163927,129164240,+,AluSx,SINE,Alu,1,312,0,129163927,129164240 -1 + chr3 129318543 129318637 chr3,129318311,129318719,+,MSTA,LTR,ERVL-MaLR,1,428,0,129318311,129318719 +3 + chr3 129323395 129323494 chr3,129323395,129323494,-,MIRb,SINE,MIR,-72,196,99,129323323,129323592 -6 - chr3 129324428 129324724 chr3,129324428,129324724,+,AluY,SINE,Alu,1,295,-16,129324428,129324740 +5 + chr3 129847424 129847957 chr3,129847424,129848424,-,L1ME1,LINE,L1,-266,5913,4899,129847158,129853322 +1 - chr3 129901707 129901748 chr3,129901261,129901748,+,MER9a3,LTR,ERVK,1,512,0,129901261,129901748 +2 + chr3 129901748 129902205 chr3,129901748,129902412,+,HERVK9-int,LTR,ERVK,1,674,-5347,129901748,129907759 +1 + chr3 129905021 129906802 chr3,129902412,129906802,+,HERVK9-int,LTR,ERVK,1637,6021,0,129900776,129906802 +5 + chr3 129906802 129907243 chr3,129906802,129907243,+,MER9a3,LTR,ERVK,1,444,-68,129906802,129907311 +6 + chr3 129907243 129907278 chr3,129907243,129907278,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,129907243,129907278 +6 + chr3 129907278 129907337 chr3,129907278,129907337,+,MER9a3,LTR,ERVK,445,512,0,129906834,129907337 +6 + chr3 129907360 129907844 chr3,129907360,129907844,+,Zaphod2,DNA,hAT-Tip100,1622,2103,-1421,129905739,129909265 +6 + chr3 129907859 129907980 chr3,129907859,129907980,-,FLAM_A,SINE,Alu,-22,120,4,129907837,129907983 -6 - chr3 129907988 129908010 chr3,129907988,129908010,+,(GCTT)n,Simple_repeat,Simple_repeat,1,22,0,129907988,129908010 +6 + chr3 129908010 129908104 chr3,129908010,129908104,-,AluSz6,SINE,Alu,-10,302,211,129908000,129908314 -6 - chr3 129908149 129908278 chr3,129908149,129908278,+,Zaphod2,DNA,hAT-Tip100,2177,2301,-1223,129905973,129909501 +6 + chr3 129908278 129908832 chr3,129908278,129908832,-,LTR35A,LTR,ERV1,-4,543,1,129908274,129908832 -6 - chr3 129908832 129908911 chr3,129908832,129909094,+,Zaphod2,DNA,hAT-Tip100,2302,2553,-971,129906531,129910065 +5 + chr3 129969198 129969294 chr3,129969175,129969400,+,AluJb,SINE,Alu,1,224,-88,129969175,129969488 -1 + chr3 130089433 130089478 chr3,130089365,130089690,+,MER33,DNA,hAT-Charlie,1,324,0,130089365,130089690 -5 + chr3 130091852 130091867 chr3,130091852,130091924,+,L2b,LINE,L2,3252,3323,-52,130088601,130091976 -2 + chr3 130112695 130112744 chr3,130112695,130112848,-,L2c,LINE,L2,-3,3384,3223,130112692,130116070 -4 - chr3 130116925 130117051 chr3,130116925,130117051,+,AluSz,SINE,Alu,2,127,-185,130116924,130117236 +6 + chr3 130119473 130119547 chr3,130119473,130119547,+,GA-rich,Low_complexity,Low_complexity,1,74,0,130119473,130119547 +6 + chr3 130120369 130120579 chr3,130120369,130120603,+,MIR,SINE,MIR,3,256,-6,130120367,130120609 +5 + chr3 130899414 130899605 chr3,130899185,130899605,-,Tigger2a,DNA,TcMar-Tigger,0,434,1,130899185,130899605 +5 - chr3 131053737 131053806 chr3,131053737,131054068,+,MamRep4096,DNA,hAT-Tip100,1,351,-75,131053737,131054143 -2 + chr3 131054484 131054585 chr3,131054484,131054740,+,AluJb,SINE,Alu,13,266,-46,131054472,131054786 -2 + chr3 131072230 131072339 chr3,131072102,131072392,-,MLT1L,LTR,ERVL-MaLR,-46,564,259,131072056,131072650 +1 - chr3 131325153 131325565 chr3,131325153,131325565,+,L1ME3C,LINE,L1,5720,6179,-63,131319434,131325628 -6 + chr3 131326231 131326276 chr3,131326231,131326628,+,L2b,LINE,L2,2762,3198,-228,131323470,131326856 -2 + chr3 131327177 131327678 chr3,131327164,131327678,+,MER115,DNA,hAT-Tip100,174,693,0,131326991,131327678 -5 + chr3 131328382 131328486 chr3,131328382,131328486,-,L2c,LINE,L2,-32,3355,3252,131328350,131331737 +6 - chr3 131329112 131329382 chr3,131329112,131329382,-,Tigger18a,DNA,TcMar-Tigger,-1,851,530,131329111,131329911 +6 - chr3 131329391 131330497 chr3,131329391,131330497,-,L2a,LINE,L2,0,3426,2245,131329391,131332741 +5 - chr3 131330534 131330703 chr3,131330534,131330703,-,Tigger18a,DNA,TcMar-Tigger,-338,514,335,131330196,131331037 +6 - chr3 131330734 131330868 chr3,131330734,131331117,-,MSTD,LTR,ERVL-MaLR,-5,391,11,131330729,131331127 +1 - chr3 131455335 131455542 chr3,131455335,131455542,+,MIRc,SINE,MIR,67,268,0,131455269,131455542 -6 + chr3 131455706 131455840 chr3,131455706,131455840,-,MER5B,DNA,hAT-Charlie,-36,142,1,131455670,131455840 +6 - chr3 131517839 131517903 chr3,131517839,131517903,-,L2c,LINE,L2,-69,3318,3257,131517770,131521159 -6 - chr3 131520553 131520577 chr3,131520553,131520577,+,(CAT)n,Simple_repeat,Simple_repeat,1,24,0,131520553,131520577 +6 + chr3 131520852 131520880 chr3,131520852,131521007,-,MIRb,SINE,MIR,0,268,81,131520852,131521087 -5 - chr3 132721750 132721801 chr3,132721656,132721801,+,FRAM,SINE,Alu,2,166,-10,132721655,132721811 +1 + chr3 132722181 132722219 chr3,132722181,132722219,+,(CCCGGC)n,Simple_repeat,Simple_repeat,1,38,0,132722181,132722219 +6 + chr3 132726361 132726398 chr3,132726083,132726398,-,MamRTE1,LINE,RTE-BovB,-2844,968,656,132723239,132727053 -2 - chr3 132733324 132733444 chr3,132732354,132733843,+,LTR49-int,LTR,ERV1,1149,2659,-3980,132731206,132737823 +3 + chr3 132748932 132749042 chr3,132748932,132749042,-,L1MC5,LINE,L1,-39,9265,9198,132748893,132758239 -6 - chr3 132749125 132749209 chr3,132749125,132749209,-,L1ME2,LINE,L1,-4,6160,6069,132749121,132755277 -6 - chr3 132749209 132749588 chr3,132749209,132749588,+,MLT1B,LTR,ERVL-MaLR,1,390,0,132749209,132749588 +6 + chr3 132749588 132750030 chr3,132749588,132750030,-,L1ME2,LINE,L1,-96,6068,5598,132749492,132755627 -6 - chr3 132750024 132750268 chr3,132750024,132750268,-,L1ME2,LINE,L1,-691,5473,5196,132749333,132755463 -6 - chr3 132750343 132750535 chr3,132750343,132750535,-,L1ME2,LINE,L1,-960,5186,4995,132749383,132755529 -6 - chr3 132750537 132750777 chr3,132750537,132751209,-,L1ME4a,LINE,L1,-193,5931,5313,132750344,132756521 -5 - chr3 132793555 132793614 chr3,132793555,132793619,+,MLT1L,LTR,ERVL-MaLR,110,173,-339,132793446,132793958 +4 + chr3 132800220 132800241 chr3,132800092,132800241,-,MER3,DNA,hAT-Charlie,-41,168,1,132800051,132800241 -2 - chr3 132800248 132800367 chr3,132800248,132800509,+,L1MC4a,LINE,L1,7583,7882,0,132792666,132800509 +4 + chr3 132812709 132812823 chr3,132812507,132812823,-,AluJr4,SINE,Alu,0,312,1,132812507,132812823 -2 - chr3 132816690 132816779 chr3,132816615,132816779,-,MIRb,SINE,MIR,-58,210,49,132816557,132816827 -2 - chr3 132818790 132819115 chr3,132818790,132819389,-,MLT1G1,LTR,ERVL-MaLR,0,579,3,132818790,132819391 -4 - chr3 132827948 132828006 chr3,132827948,132828041,+,MLT1I,LTR,ERVL-MaLR,33,125,-286,132827916,132828327 +4 + chr3 133015004 133015032 chr3,133014794,133015032,+,L1ME4b,LINE,L1,443,676,-216,133014352,133015248 -5 + chr3 133015046 133015168 chr3,133015046,133015281,+,Tigger2a,DNA,TcMar-Tigger,1,225,-209,133015046,133015490 -2 + chr3 133036834 133036859 chr3,133036697,133036859,+,MER5B,DNA,hAT-Charlie,1,178,0,133036697,133036859 -4 + chr3 133246133 133246228 chr3,133246133,133246228,-,Charlie5,DNA,hAT-Charlie,-2509,115,18,133243624,133246245 +6 - chr3 133247110 133247151 chr3,133247110,133247151,+,OldhAT1,DNA,hAT-Ac,161,201,-2647,133246950,133249798 -6 + chr3 133247209 133247559 chr3,133247209,133247559,-,Charlie7,DNA,hAT-Charlie,-2058,554,203,133245151,133247761 +6 - chr3 133247641 133247666 chr3,133247641,133247666,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,133247641,133247666 -6 + chr3 133247717 133247868 chr3,133247717,133247868,-,L2b,LINE,L2,-1,3386,3239,133247716,133251106 +6 - chr3 133247909 133247993 chr3,133247909,133247993,-,L2c,LINE,L2,-35,3352,3269,133247874,133251261 +6 - chr3 133248046 133248142 chr3,133248046,133248142,+,LTR79,LTR,ERVL,380,481,-46,133247667,133248188 -6 + chr3 133248220 133248415 chr3,133248220,133248415,-,MIRc,SINE,MIR,-47,221,1,133248173,133248415 +6 - chr3 133253362 133253429 chr3,133253214,133253429,+,MIR1_Amn,SINE,MIR,2,208,0,133253213,133253429 -4 + chr3 133429269 133429597 chr3,133429243,133429597,-,MLT2D,LTR,ERVL,0,414,54,133429243,133429650 +5 - chr3 133429609 133429683 chr3,133429609,133429683,-,L1ME3Cz,LINE,L1,-354,643,564,133429255,133430246 +6 - chr3 133429689 133429709 chr3,133429689,133429754,-,HSMAR2,DNA,TcMar-Mariner,-1,1301,1240,133429688,133430993 +2 - chr3 133445405 133445516 chr3,133445334,133445516,-,MER5A,DNA,hAT-Charlie,-4,185,2,133445330,133445517 +4 - chr3 133445527 133445575 chr3,133445527,133445852,+,MER2,DNA,TcMar-Tigger,1,345,0,133445527,133445852 -2 + chr3 133455329 133455463 chr3,133455294,133455682,-,MLT1E1,LTR,ERVL-MaLR,-126,528,3,133455168,133455684 +3 - chr3 133543355 133543466 chr3,133543355,133543772,-,MLT1C,LTR,ERVL-MaLR,0,467,1,133543355,133543772 +1 - chr3 134321156 134321171 chr3,134321156,134321301,+,L1ME3G,LINE,L1,504,574,-350,134320653,134321651 +5 + chr3 134347288 134347569 chr3,134346845,134347569,+,L1M4,LINE,L1,3729,4456,-1690,134343117,134349259 -5 + chr3 134347953 134348208 chr3,134347953,134348208,-,L1MC3,LINE,L1,-1,7784,7479,134347952,134355686 +6 - chr3 134348227 134348470 chr3,134348227,134348470,+,MIRb,SINE,MIR,9,265,-3,134348219,134348473 -6 + chr3 135373795 135374186 chr3,135373752,135374186,-,MamGypLTR1a,LTR,Gypsy,-7,777,318,135373745,135374503 +5 - chr3 135374284 135374321 chr3,135374284,135374386,-,MamGypLTR1a,LTR,Gypsy,-694,119,2,135373590,135374387 +2 - chr3 135379046 135379104 chr3,135379007,135379104,-,MLT1N2,LTR,ERVL-MaLR,-57,505,404,135378950,135379507 +5 - chr3 135379190 135379238 chr3,135379190,135379238,+,(CCAGGCA)n,Simple_repeat,Simple_repeat,1,52,0,135379190,135379238 -6 + chr3 135379781 135379847 chr3,135379712,135379909,+,MIRb,SINE,MIR,46,249,-19,135379667,135379928 -3 + chr3 135439756 135439860 chr3,135439148,135439860,-,L1P1,LINE,L1,-5443,712,1,135433705,135439860 +1 - chr3 136754032 136754045 chr3,136754032,136754045,+,(TTTCTTT)n,Simple_repeat,Simple_repeat,1,13,0,136754032,136754045 +6 + chr3 136754045 136754336 chr3,136754045,136754336,+,AluSx,SINE,Alu,1,293,-19,136754045,136754355 +6 + chr3 136754336 136754362 chr3,136754336,136754362,+,(TTTCTTT)n,Simple_repeat,Simple_repeat,1,25,0,136754336,136754362 +6 + chr3 136754746 136754894 chr3,136754746,136754894,+,MIR,SINE,MIR,7,186,-76,136754740,136754970 +6 + chr3 136754894 136754928 chr3,136754894,136754928,+,(AACTATTT)n,Simple_repeat,Simple_repeat,1,35,0,136754894,136754928 +6 + chr3 136754995 136755077 chr3,136754995,136755077,-,HAL1ME,LINE,L1,-714,1751,1667,136754281,136756743 -6 - chr3 136755334 136755464 chr3,136755334,136755464,-,AluJr,SINE,Alu,-2,310,179,136755332,136755642 -6 - chr3 136837504 136837817 chr3,136837504,136837817,-,L1ME3G,LINE,L1,-257,667,334,136837247,136838150 +6 - chr3 136837843 136838135 chr3,136837843,136838135,-,AluJb,SINE,Alu,-16,296,1,136837827,136838135 +6 - chr3 136838240 136838283 chr3,136838240,136838283,+,(AT)n,Simple_repeat,Simple_repeat,1,43,0,136838240,136838283 -6 + chr3 136841732 136841777 chr3,136841732,136841777,+,(AAAT)n,Simple_repeat,Simple_repeat,1,45,0,136841732,136841777 -6 + chr3 136959481 136959513 chr3,136959481,136959513,+,(TTAG)n,Simple_repeat,Simple_repeat,1,34,0,136959481,136959513 -6 + chr3 137776365 137776404 chr3,137776365,137776525,-,MIR,SINE,MIR,-13,249,81,137776352,137776605 -4 - chr3 137780627 137780828 chr3,137780627,137780828,+,MIRb,SINE,MIR,57,252,-16,137780571,137780844 +6 + chr3 137793051 137793341 chr3,137793051,137793341,+,UCON40,Unknown,Unknown,1,311,-4,137793051,137793345 +6 + chr3 137794172 137794243 chr3,137794172,137794243,+,Tigger14a,DNA,TcMar-Tigger,84,167,-157,137794089,137794400 +6 + chr3 137794388 137794422 chr3,137794388,137794422,+,(ATT)n,Simple_repeat,Simple_repeat,1,34,0,137794388,137794422 +6 + chr3 137794703 137794898 chr3,137794703,137794898,-,MIRb,SINE,MIR,0,268,58,137794703,137794955 -6 - chr3 137794949 137794983 chr3,137794949,137794983,+,(TC)n,Simple_repeat,Simple_repeat,1,35,0,137794949,137794983 +6 + chr3 137795032 137795399 chr3,137795032,137795399,+,L2,LINE,L2,1698,2100,-1319,137793335,137796718 +6 + chr3 137795415 137795621 chr3,137795415,137795621,-,MIRb,SINE,MIR,0,268,68,137795415,137795688 -6 - chr3 137795849 137795986 chr3,137795849,137795986,-,L2c,LINE,L2,-11,3376,3249,137795838,137799234 -6 - chr3 137796537 137796678 chr3,137796537,137797591,+,L1MC5a,LINE,L1,1524,2540,-237,137795014,137797828 +5 + chr3 138004649 138004789 chr3,138004372,138004789,+,L1ME4a,LINE,L1,4590,5024,-1122,137999783,138005911 -5 + chr3 138004910 138004974 chr3,138004910,138004974,-,L2a,LINE,L2,-6,3420,3320,138004904,138008293 +6 - chr3 138482065 138482442 chr3,138482009,138482442,+,L1MEi,LINE,L1,5178,5676,-478,138476832,138482920 +1 + chr3 138482517 138482939 chr3,138482517,138482939,+,L1ME3B,LINE,L1,5614,6066,-176,138476904,138483115 +6 + chr3 138482956 138483109 chr3,138482956,138483109,+,L1ME3B,LINE,L1,6179,6331,-3,138476778,138483112 +6 + chr3 138483235 138483305 chr3,138483235,138483305,-,Charlie15a,DNA,hAT-Charlie,-152,72,1,138483083,138483305 -6 - chr3 138483461 138484473 chr3,138483461,138484473,-,L1MA2,LINE,L1,0,7723,6671,138483461,138491143 -6 - chr3 138484473 138485755 chr3,138484473,138486090,+,LTR12C,LTR,ERV1,3,1579,0,138484471,138486090 +5 + chr3 138935325 138935630 chr3,138935325,138935630,+,L1ME4a,LINE,L1,5776,6090,-34,138929550,138935664 -6 + chr3 138936817 138936957 chr3,138936817,138936957,+,MIR3,SINE,MIR,15,145,-63,138936803,138937020 -6 + chr3 138940428 138940632 chr3,138940408,138940632,-,MIRc,SINE,MIR,-17,251,2,138940391,138940633 +5 - chr3 139104245 139104390 chr3,139104245,139104390,-,MIRb,SINE,MIR,-90,178,21,139104155,139104410 -6 - chr3 139105051 139105077 chr3,139105051,139105077,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,139105051,139105077 +6 + chr3 139105476 139105675 chr3,139105476,139105675,+,MIRb,SINE,MIR,5,229,-39,139105472,139105714 +6 + chr3 139105922 139106004 chr3,139105922,139106004,-,MamTip2,DNA,hAT-Tip100,-41,264,186,139105881,139106189 -6 - chr3 139106014 139106085 chr3,139106014,139106085,+,L2c,LINE,L2,3313,3387,0,139102702,139106085 +6 + chr3 139106087 139106128 chr3,139106087,139106128,-,MamTip2,DNA,hAT-Tip100,-151,154,113,139105936,139106240 -6 - chr3 139106140 139106371 chr3,139106140,139106371,-,L2a,LINE,L2,-1,3386,3158,139106139,139109528 -6 - chr3 139124494 139124731 chr3,139124494,139124731,+,MIR,SINE,MIR,1,261,-1,139124494,139124732 +6 + chr3 139124742 139124940 chr3,139124742,139124940,+,L1MC5,LINE,L1,9099,9291,-13,139115644,139124953 +6 + chr3 139124944 139124973 chr3,139124944,139124973,+,(TA)n,Simple_repeat,Simple_repeat,1,29,0,139124944,139124973 +6 + chr3 139124992 139125171 chr3,139124992,139125275,+,MER113,DNA,hAT-Charlie,1,518,-3,139124992,139125278 +5 + chr3 139390231 139390255 chr3,139390231,139390255,+,(GT)n,Simple_repeat,Simple_repeat,1,24,0,139390231,139390255 +6 + chr3 139390281 139390328 chr3,139390281,139390328,-,L2a,LINE,L2,-2,3424,3378,139390279,139393705 -6 - chr3 139390325 139390429 chr3,139390325,139390457,-,MIRb,SINE,MIR,-61,207,50,139390264,139390506 -4 - chr3 139419557 139419680 chr3,139415491,139419805,-,L1M1,LINE,L1,-3001,4564,22,139412490,139419826 -3 - chr3 139423073 139423393 chr3,139423073,139424214,+,L1MDa,LINE,L1,147,1346,-5287,139422927,139429501 +5 + chr3 139450280 139450413 chr3,139450185,139450414,-,MIRb,SINE,MIR,-22,246,1,139450163,139450414 -3 - chr3 139452173 139452240 chr3,139452173,139452404,-,MIR,SINE,MIR,-8,254,27,139452165,139452430 -5 - chr3 139466669 139466765 chr3,139466669,139466765,+,MIRb,SINE,MIR,176,267,-1,139466494,139466766 +6 + chr3 139540124 139540224 chr3,139540124,139540433,+,AluSx1,SINE,Alu,2,309,-3,139540123,139540436 +4 + chr3 139678620 139678853 chr3,139678541,139678853,-,Arthur1C,DNA,hAT-Tip100,-13,350,19,139678528,139678871 +5 - chr3 139678854 139678929 chr3,139678854,139678929,-,L2,LINE,L2,-794,2625,2550,139678060,139681478 +6 - chr3 139679247 139679348 chr3,139679247,139679348,+,MIRb,SINE,MIR,92,194,-74,139679156,139679422 -6 + chr3 139679386 139679427 chr3,139679386,139679427,+,LTR81A,LTR,Gypsy,1232,1271,-79,139678155,139679506 -6 + chr3 139679665 139679997 chr3,139679665,139679997,+,L1PB1,LINE,L1,5814,6149,-2,139673852,139679999 -6 + chr3 139680205 139680341 chr3,139680205,139680341,+,LTR81C,LTR,Gypsy,1,151,-1002,139680205,139681343 -6 + chr3 139680341 139680573 chr3,139680341,139680573,-,LTR16C,LTR,ERVL,0,489,245,139680341,139680817 +6 - chr3 139681047 139681326 chr3,139681047,139681326,-,AluSq,SINE,Alu,-12,301,1,139681035,139681326 +6 - chr3 139681431 139681712 chr3,139681431,139681712,+,L2a,LINE,L2,2766,3069,-350,139678666,139682062 -6 + chr3 139681842 139681985 chr3,139681842,139681985,+,L2a,LINE,L2,3278,3426,0,139678565,139681985 -6 + chr3 139688419 139688554 chr3,139688419,139688554,-,L1ME4a,LINE,L1,-2,6122,5979,139688417,139694532 +6 - chr3 139688625 139688779 chr3,139688625,139688779,+,LTR85c,LTR,Gypsy?,102,263,-560,139688524,139689339 -6 + chr3 139689183 139689342 chr3,139689183,139689585,+,LTR85c,LTR,Gypsy?,397,775,-48,139688787,139689633 -1 + chr3 139859623 139859894 chr3,139859495,139859930,+,MLT1C,LTR,ERVL-MaLR,1,505,0,139859495,139859930 +5 + chr3 140449435 140449776 chr3,140449284,140449853,-,LTR73,LTR,ERV1,0,572,1,140449284,140449853 +5 - chr3 140454381 140454418 chr3,140454381,140454490,+,MamGypsy2-I,LTR,Gypsy,1879,1997,-2169,140452503,140456659 -2 + chr3 140454657 140454753 chr3,140454563,140454892,-,MLT1I,LTR,ERVL-MaLR,-2,409,74,140454561,140454965 +1 - chr3 140460295 140460351 chr3,140460295,140460514,+,MIR,SINE,MIR,43,262,0,140460253,140460514 -1 + chr3 140505964 140506049 chr3,140505964,140506049,+,MIR3,SINE,MIR,41,124,-84,140505924,140506133 -6 + chr3 140506713 140506990 chr3,140506713,140506990,+,MER33,DNA,hAT-Charlie,1,301,-23,140506713,140507013 -6 + chr3 140507193 140507391 chr3,140507193,140507391,-,MIR,SINE,MIR,-18,244,29,140507175,140507419 +6 - chr3 140507630 140507857 chr3,140507630,140507857,+,L2c,LINE,L2,3153,3385,-2,140504478,140507859 -6 + chr3 140507866 140508012 chr3,140507866,140508012,-,MIRb,SINE,MIR,-94,174,24,140507772,140508035 +6 - chr3 140508375 140508411 chr3,140508375,140508411,+,(TTCA)n,Simple_repeat,Simple_repeat,1,36,0,140508375,140508411 -6 + chr3 140865075 140867285 chr3,140864685,140867285,-,L1MA3,LINE,L1,-15,7709,5032,140864670,140872316 +5 - chr3 140867321 140867783 chr3,140867321,140869737,-,L1MA3,LINE,L1,-5111,2454,24,140862210,140869760 +1 - chr3 140973225 140973255 chr3,140973225,140973289,-,L1ME5,LINE,L1,-19,6175,6113,140973206,140979401 -5 - chr3 141525315 141525356 chr3,141525315,141525443,-,FLAM_A,SINE,Alu,-14,128,2,141525301,141525444 -4 - chr3 141525734 141525826 chr3,141525525,141525826,+,AluJb,SINE,Alu,3,300,-12,141525523,141525838 +2 + chr3 141525874 141526011 chr3,141525874,141526011,-,MIR3,SINE,MIR,-16,192,56,141525858,141526066 -6 - chr3 141526033 141526121 chr3,141526033,141526235,+,MIRb,SINE,MIR,22,262,-6,141526012,141526241 +5 + chr3 141918923 141918957 chr3,141918923,141918957,+,(TTTG)n,Simple_repeat,Simple_repeat,1,35,0,141918923,141918957 -6 + chr3 141936707 141936990 chr3,141936680,141936990,-,AluY,SINE,Alu,-1,310,1,141936679,141936990 +5 - chr3 141936992 141937294 chr3,141936992,141937294,-,AluSq2,SINE,Alu,0,313,2,141936992,141937295 +6 - chr3 141937294 141937518 chr3,141937294,141937518,-,AluSc5,SINE,Alu,-83,226,3,141937211,141937520 +6 - chr3 141938380 141938547 chr3,141938380,141938682,-,AluSq2,SINE,Alu,-10,303,1,141938370,141938682 +1 - chr3 142157925 142157951 chr3,142157925,142157951,+,(GTT)n,Simple_repeat,Simple_repeat,1,28,0,142157925,142157951 -6 + chr3 142157951 142158250 chr3,142157951,142158250,-,AluY,SINE,Alu,-12,299,1,142157939,142158250 +6 - chr3 142158250 142158265 chr3,142158250,142158265,+,(GTT)n,Simple_repeat,Simple_repeat,2,16,0,142158249,142158265 -6 + chr3 142158269 142158376 chr3,142158269,142158376,-,AluJb,SINE,Alu,-204,108,2,142158065,142158377 +6 - chr3 142159076 142159133 chr3,142159076,142159133,-,AluJo,SINE,Alu,-73,239,183,142159003,142159315 +6 - chr3 142159133 142159327 chr3,142159133,142159327,+,L1MD,LINE,L1,5314,5602,-757,142153820,142160084 -6 + chr3 142159829 142159854 chr3,142159829,142159854,+,(TC)n,Simple_repeat,Simple_repeat,1,25,0,142159829,142159854 -6 + chr3 142159854 142160147 chr3,142159854,142160147,-,AluSx,SINE,Alu,-19,293,1,142159835,142160147 +6 - chr3 142160148 142160283 chr3,142160148,142160283,-,FLAM_C,SINE,Alu,-7,136,7,142160141,142160289 +6 - chr3 142160719 142161022 chr3,142160719,142161022,-,AluJr,SINE,Alu,-13,299,1,142160706,142161022 +6 - chr3 142161072 142161374 chr3,142161072,142161374,-,AluSp,SINE,Alu,0,313,29,142161072,142161402 +6 - chr3 142161528 142161588 chr3,142161528,142161588,-,L2c,LINE,L2,-39,3348,3276,142161489,142164863 +6 - chr3 142161789 142161818 chr3,142161789,142161818,+,(ATTG)n,Simple_repeat,Simple_repeat,1,29,0,142161789,142161818 -6 + chr3 142161818 142161978 chr3,142161818,142162098,-,AluJb,SINE,Alu,-32,280,2,142161786,142162099 +1 - chr3 142465723 142465811 chr3,142465723,142466039,+,AluJb,SINE,Alu,1,312,0,142465723,142466039 -2 + chr3 142472070 142472085 chr3,142471615,142472085,-,L1MA8,LINE,L1,-2,6289,5794,142471613,142477878 +4 - chr3 142472085 142472124 chr3,142472085,142472124,+,(TG)n,Simple_repeat,Simple_repeat,1,39,0,142472085,142472124 -6 + chr3 142472124 142472337 chr3,142472124,142472628,-,L1MA8,LINE,L1,-498,5793,5299,142471626,142477926 +1 - chr3 142654784 142654813 chr3,142654722,142654813,+,L2b,LINE,L2,3288,3375,0,142651435,142654813 -5 + chr3 142926675 142926896 chr3,142926619,142927109,+,HAL1,LINE,L1,1,551,-1956,142926619,142929065 +1 + chr3 142938584 142938653 chr3,142938584,142938861,+,AluSq2,SINE,Alu,1,277,-36,142938584,142938897 +4 + chr3 142941610 142941921 chr3,142941610,142941921,+,L4_C_Mam,LINE,RTE-X,969,1337,-3801,142940642,142945722 +5 + chr3 142964058 142964083 chr3,142964025,142964083,+,G-rich,Low_complexity,Low_complexity,1,60,0,142964025,142964083 +1 + chr3 142964227 142964267 chr3,142964227,142964267,+,(GT)n,Simple_repeat,Simple_repeat,1,41,0,142964227,142964267 +6 + chr3 142964846 142965124 chr3,142964846,142965140,+,AluSc,SINE,Alu,1,307,-2,142964846,142965142 +5 + chr3 142966924 142967072 chr3,142966924,142967072,+,A-rich,Low_complexity,Low_complexity,1,152,0,142966924,142967072 +6 + chr3 142967171 142967466 chr3,142967171,142967469,+,AluSz,SINE,Alu,1,298,-14,142967171,142967483 +5 + chr3 142990015 142990292 chr3,142989988,142990292,-,AluSq2,SINE,Alu,-7,306,1,142989981,142990292 -2 - chr3 142994601 142994645 chr3,142994545,142994645,-,L2a,LINE,L2,-1,3425,3324,142994544,142997968 -2 - chr3 143000907 143000919 chr3,143000812,143000919,-,MamTip1,DNA,hAT-Tip100,-1,266,166,143000811,143001084 +5 - chr3 143112279 143112359 chr3,143112279,143112446,+,L4_A_Mam,LINE,RTE-X,4481,4640,-350,143107799,143112796 +5 + chr3 143131394 143131447 chr3,143131394,143131447,-,MIRc,SINE,MIR,0,268,218,143131394,143131664 -6 - chr3 143131447 143131628 chr3,143131447,143131946,+,MLT1J,LTR,ERVL-MaLR,5,512,0,143131443,143131946 +5 + chr3 143131718 143131893 chr3,143131447,143131946,+,MLT1J,LTR,ERVL-MaLR,5,512,0,143131443,143131946 +5 + chr3 143342246 143342284 chr3,143342186,143342431,-,AluSz6,SINE,Alu,-15,297,54,143342171,143342484 -1 - chr3 143381338 143381446 chr3,143381164,143381529,+,THE1B,LTR,ERVL-MaLR,1,364,0,143381164,143381529 +1 + chr3 144442671 144442982 chr3,144442671,144442982,-,AluSx1,SINE,Alu,-2,310,1,144442669,144442982 +6 - chr3 144443913 144444027 chr3,144443913,144444027,-,Arthur1C,DNA,hAT-Tip100,-1,362,250,144443912,144444276 +6 - chr3 144444101 144444227 chr3,144444101,144444227,-,Arthur1C,DNA,hAT-Tip100,-228,135,6,144443873,144444232 +6 - chr3 144445595 144445636 chr3,144445595,144445636,+,(AATGAGA)n,Simple_repeat,Simple_repeat,1,44,0,144445595,144445636 -6 + chr3 144445734 144445844 chr3,144445734,144446040,+,AluJb,SINE,Alu,3,298,-14,144445732,144446054 -1 + chr3 145939912 145940017 chr3,145939851,145940017,+,LTR88a,LTR,Gypsy?,309,474,-342,145939543,145940359 +1 + chr3 145957445 145957665 chr3,145957445,145957665,+,MLT1K,LTR,ERVL-MaLR,374,591,-4,145957072,145957669 +6 + chr3 145961755 145961779 chr3,145961584,145961779,+,L1MEg,LINE,L1,207,404,-5838,145961378,145967617 +1 + chr3 145961779 145961912 chr3,145961779,145961912,+,L2,LINE,L2,2780,2917,-502,145959000,145962414 +6 + chr3 145961924 145962115 chr3,145961924,145962115,+,L1MEg,LINE,L1,414,598,-5644,145961511,145967759 +6 + chr3 145962192 145962220 chr3,145962192,145962525,-,L1MEg,LINE,L1,-5048,1036,630,145957144,145963154 -4 - chr3 146059903 146060073 chr3,146059903,146060073,-,MER5B,DNA,hAT-Charlie,-8,170,1,146059895,146060073 +6 - chr3 146060084 146060476 chr3,146060084,146060476,+,L3,LINE,CR1,3470,3924,-175,146056615,146060651 -6 + chr3 146060974 146061142 chr3,146060974,146061142,-,MER5B,DNA,hAT-Charlie,-7,171,2,146060967,146061143 +6 - chr3 146061319 146061679 chr3,146061319,146061870,+,L3,LINE,CR1,3147,3716,-383,146058173,146062253 -1 + chr3 146064133 146064250 chr3,146064133,146064288,-,L2c,LINE,L2,-5,3382,3190,146064128,146067477 -4 - chr3 146066387 146066685 chr3,146066387,146066788,-,L1M1,LINE,L1,-535,5769,5379,146065852,146072166 +2 - chr3 146068114 146068257 chr3,146068010,146068426,+,Tigger2a,DNA,TcMar-Tigger,8,434,0,146068003,146068426 +5 + chr3 146068849 146068968 chr3,146068849,146068968,-,MamRep1894,DNA,hAT,-7,116,1,146068842,146068968 +6 - chr3 146069127 146069185 chr3,146069127,146069212,+,L2a,LINE,L2,3340,3425,-1,146065788,146069213 -1 + chr3 146104987 146105204 chr3,146104926,146105222,+,MLT1J,LTR,ERVL-MaLR,188,473,-39,146104739,146105261 +5 + chr3 146504570 146505112 chr3,146504481,146505112,-,MER41B,LTR,ERV1,0,634,1,146504481,146505112 +5 - chr3 146505706 146505947 chr3,146505706,146505947,+,L1M5,LINE,L1,4787,5048,-1098,146500920,146507045 -6 + chr3 146506089 146506549 chr3,146506089,146506549,+,L1M5,LINE,L1,5268,5730,-393,146500822,146506942 -6 + chr3 146909685 146909711 chr3,146909406,146909726,+,AluJr,SINE,Alu,2,296,-16,146909405,146909742 -5 + chr3 146919068 146919185 chr3,146918923,146919206,+,AluSz,SINE,Alu,1,296,-16,146918923,146919222 -3 + chr3 146921923 146922118 chr3,146921461,146922118,+,MER66D,LTR,ERV1,1,483,-1,146921461,146922119 +1 + chr3 146924012 146924155 chr3,146924012,146924155,+,ERVL-E-int,LTR,ERVL,399,547,-5120,146923614,146929275 +6 + chr3 146924178 146924408 chr3,146924178,146924408,+,MIR,SINE,MIR,30,260,-2,146924149,146924410 +6 + chr3 146926569 146926638 chr3,146926569,146926638,-,L1MA4,LINE,L1,-420,5880,5811,146926149,146932448 +6 - chr3 147844123 147844179 chr3,147843732,147844179,+,MLT1D,LTR,ERVL-MaLR,3,505,0,147843730,147844179 -5 + chr3 147844179 147844206 chr3,147844179,147844206,+,L1MEi,LINE,L1,1691,1715,-497,147842489,147844703 -6 + chr3 147844238 147844302 chr3,147844238,147844302,+,MER53,DNA,hAT,127,192,-1,147844112,147844303 -6 + chr3 147844314 147844342 chr3,147844314,147844342,+,(TTGTT)n,Simple_repeat,Simple_repeat,1,28,0,147844314,147844342 -6 + chr3 147844622 147844646 chr3,147844607,147844780,+,MIR,SINE,MIR,94,262,0,147844514,147844780 -3 + chr3 147941672 147941731 chr3,147941672,147941731,+,(TA)n,Simple_repeat,Simple_repeat,1,60,0,147941672,147941731 +6 + chr3 147941722 147941774 chr3,147941722,147941774,+,(TG)n,Simple_repeat,Simple_repeat,1,52,0,147941722,147941774 +6 + chr3 147942606 147942670 chr3,147942606,147942670,+,(TGTT)n,Simple_repeat,Simple_repeat,1,64,0,147942606,147942670 +6 + chr3 147942735 147943014 chr3,147942735,147943043,+,AluSq,SINE,Alu,6,312,-1,147942730,147943044 +5 + chr3 147995755 147995852 chr3,147995733,147995868,-,L2a,LINE,L2,-25,3401,3267,147995708,147999134 -3 - chr3 148006588 148006755 chr3,148006370,148006867,+,MLT1F1,LTR,ERVL-MaLR,1,515,-54,148006370,148006921 +5 + chr3 148087738 148087813 chr3,148087496,148087813,+,MER102b,DNA,hAT-Charlie,26,313,-18,148087471,148087831 +2 + chr3 148160911 148161076 chr3,148160534,148161254,+,Tigger1,DNA,TcMar-Tigger,1694,2417,-1,148158841,148161255 +1 + chr3 148207860 148207934 chr3,148207860,148208182,-,MER50,LTR,ERV1,-23,711,379,148207837,148208560 +2 - chr3 148210025 148210088 chr3,148209836,148210120,+,L2c,LINE,L2,3039,3369,-18,148206798,148210138 -3 + chr3 148226377 148226606 chr3,148226191,148226653,+,MLT1C,LTR,ERVL-MaLR,1,467,0,148226191,148226653 +5 + chr3 148280891 148281080 chr3,148279782,148281080,-,LTR12C,LTR,ERV1,-1,1578,4,148279781,148281083 -1 - chr3 148279782 148280098 chr3,148279782,148281080,-,LTR12C,LTR,ERV1,-1,1578,4,148279781,148281083 +1 - chr3 148281081 148281109 chr3,148281081,148281370,+,ERVL-E-int,LTR,ERVL,4751,5068,-646,148276331,148282016 +4 + chr3 148288990 148289043 chr3,148288990,148289063,+,L3,LINE,CR1,3607,3675,-424,148285384,148289487 +4 + chr3 148851051 148851360 chr3,148851051,148851360,+,AluSx3,SINE,Alu,1,307,-4,148851051,148851364 -6 + chr3 148851361 148851414 chr3,148851361,148851414,+,(AGAA)n,Simple_repeat,Simple_repeat,1,53,0,148851361,148851414 -6 + chr3 148851601 148851708 chr3,148851601,148851708,-,L2b,LINE,L2,-219,3156,3048,148851382,148854755 +6 - chr3 148851903 148851940 chr3,148851903,148852073,-,MER53,DNA,hAT,0,193,10,148851903,148852082 +2 - chr3 148869948 148870089 chr3,148869812,148870121,+,AluSx4,SINE,Alu,1,309,-1,148869812,148870122 -3 + chr3 148911257 148911352 chr3,148911251,148911654,-,LTR33B,LTR,ERVL,-84,419,1,148911167,148911654 +3 - chr3 148960047 148960112 chr3,148959962,148960334,-,THE1B,LTR,ERVL-MaLR,0,364,1,148959962,148960334 +1 - chr3 149102587 149102693 chr3,149102037,149102693,-,L1PA12,LINE,L1,0,6168,5491,149102037,149108183 -2 - chr3 149102693 149102804 chr3,149102693,149102804,+,L2a,LINE,L2,3295,3425,-1,149099399,149102805 +6 + chr3 149284782 149285090 chr3,149283837,149285090,+,LTR12C,LTR,ERV1,2,1579,0,149283836,149285090 +1 + chr3 149285090 149285182 chr3,149285090,149285688,+,HERV9NC-int,LTR,ERV1,1,617,-5501,149285090,149291189 +4 + chr3 149384594 149384704 chr3,149384594,149384704,+,MER5A,DNA,hAT-Charlie,80,189,0,149384515,149384704 -6 + chr3 149385643 149385800 chr3,149385643,149386323,-,MER51A,LTR,ERV1,-9,625,1,149385634,149386323 +1 - chr3 149648997 149649102 chr3,149648977,149649291,-,AluSp,SINE,Alu,0,313,1,149648977,149649291 +5 - chr3 149649840 149649938 chr3,149649635,149649938,+,AluSq2,SINE,Alu,2,304,-9,149649634,149649947 -4 + chr3 149649938 149650051 chr3,149649938,149650051,-,AluJr,SINE,Alu,-189,123,11,149649749,149650061 +6 - chr3 149658142 149658168 chr3,149658142,149658168,+,(CCT)n,Simple_repeat,Simple_repeat,1,26,0,149658142,149658168 +6 + chr3 149659378 149659634 chr3,149659331,149659634,-,AluSq10,SINE,Alu,-11,302,1,149659320,149659634 -2 - chr3 149659920 149660057 chr3,149659920,149660057,-,AluSx,SINE,Alu,-14,298,162,149659906,149660218 -6 - chr3 149661106 149661364 chr3,149660900,149661378,+,MLT1H,LTR,ERVL-MaLR,1,522,-27,149660900,149661405 +5 + chr3 149976755 149976817 chr3,149976738,149976817,+,MLT1L,LTR,ERVL-MaLR,1,82,-528,149976738,149977345 +1 + chr3 149979152 149979355 chr3,149979022,149979406,+,MSTA,LTR,ERVL-MaLR,3,428,0,149979020,149979406 +5 + chr3 150039214 150039244 chr3,150038671,150039244,+,MER51A,LTR,ERV1,1,634,0,150038671,150039244 +1 + chr3 150039244 150039259 chr3,150039244,150039343,+,THE1B,LTR,ERVL-MaLR,271,364,0,150038974,150039343 +4 + chr3 150077494 150077530 chr3,150077389,150077530,+,MamGypsy2-LTR,LTR,Gypsy,12,166,-17,150077378,150077547 -5 + chr3 150077723 150077832 chr3,150077723,150077832,-,U13_,snRNA,snRNA,0,108,1,150077723,150077832 +6 - chr3 150077856 150077882 chr3,150077856,150077882,+,(TC)n,Simple_repeat,Simple_repeat,1,26,0,150077856,150077882 -6 + chr3 150077882 150077917 chr3,150077882,150077917,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,150077882,150077917 -6 + chr3 150078086 150078411 chr3,150078086,150078411,-,MamRep4096,DNA,hAT-Tip100,-15,411,73,150078071,150078483 +6 - chr3 150078417 150078625 chr3,150078417,150078625,-,MIR,SINE,MIR,0,262,31,150078417,150078655 +6 - chr3 150078976 150079012 chr3,150078976,150079012,+,(GCCTCA)n,Simple_repeat,Simple_repeat,1,36,0,150078976,150079012 -6 + chr3 150079305 150079381 chr3,150079305,150079570,+,ORSL-2a,DNA,hAT-Tip100,1,282,-60,150079305,150079630 -2 + chr3 150080039 150080117 chr3,150079901,150080614,+,L2a,LINE,L2,2650,3424,-2,150077252,150080616 -1 + chr3 150098032 150098150 chr3,150097823,150098228,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,150097823,150098228 +1 + chr3 150202216 150202276 chr3,150202216,150202276,-,MLT1J,LTR,ERVL-MaLR,-539,71,1,150201677,150202276 +6 - chr3 150213382 150213497 chr3,150213266,150213497,-,MIR,SINE,MIR,-8,254,2,150213258,150213498 -2 - chr3 150213497 150213543 chr3,150213497,150213543,-,MIR3,SINE,MIR,-75,133,89,150213422,150213631 -6 - chr3 150213688 150213726 chr3,150213688,150214192,-,L1MB4,LINE,L1,-10,6170,5670,150213678,150219861 -5 - chr3 150224237 150224344 chr3,150223744,150224485,+,ERVL-E-int,LTR,ERVL,190,1060,-4654,150223555,150229139 -3 + chr3 150224921 150225000 chr3,150224604,150225292,+,ERVL-E-int,LTR,ERVL,1358,2060,-3607,150223247,150228899 -1 + chr3 150225075 150225190 chr3,150224604,150225292,+,ERVL-E-int,LTR,ERVL,1358,2060,-3607,150223247,150228899 -1 + chr3 150240004 150240055 chr3,150240004,150240055,+,A-rich,Low_complexity,Low_complexity,1,51,0,150240004,150240055 +6 + chr3 150706927 150706990 chr3,150706689,150706990,-,AluY,SINE,Alu,-11,300,1,150706678,150706990 -2 - chr3 150706990 150707167 chr3,150706990,150707167,-,THE1D,LTR,ERVL-MaLR,-204,177,1,150706786,150707167 -6 - chr3 150707932 150708009 chr3,150707746,150708140,-,L1MA6,LINE,L1,-126,6174,5778,150707620,150713917 -1 - chr3 150719447 150719548 chr3,150719151,150719578,+,L1MB8,LINE,L1,5755,6172,-6,150713397,150719584 +3 + chr3 150720092 150720146 chr3,150720092,150720451,-,THE1B,LTR,ERVL-MaLR,0,364,1,150720092,150720451 -5 - chr3 150852484 150852606 chr3,150852347,150852815,+,MER70B,LTR,ERVL,90,578,0,150852258,150852815 +1 + chr3 151001574 151001629 chr3,151001506,151001978,+,LTR33,LTR,ERVL,34,515,0,151001473,151001978 +3 + chr3 151038664 151038707 chr3,151038664,151038707,-,MamRTE1,LINE,RTE-BovB,-1060,2752,2711,151037604,151041417 -6 - chr3 151062643 151062990 chr3,151062550,151062990,-,MLT1J,LTR,ERVL-MaLR,0,512,1,151062550,151062990 -2 - chr3 151062990 151063003 chr3,151062990,151063233,-,L1ME4a,LINE,L1,-324,5800,5523,151062666,151068755 -4 - chr3 151065013 151065076 chr3,151064995,151065159,+,THE1C,LTR,ERVL-MaLR,203,375,0,151064793,151065159 +3 + chr3 151066310 151066348 chr3,151066249,151066348,+,L2c,LINE,L2,3260,3371,-16,151062990,151066364 +2 + chr3 151078983 151079118 chr3,151078983,151079118,-,MER102a,DNA,hAT-Charlie,-49,281,126,151078934,151079243 -6 - chr3 151079500 151079565 chr3,151079500,151079565,+,MamRep605,LTR?,LTR?,649,713,-136,151078852,151079701 +6 + chr3 151079882 151080188 chr3,151079882,151080188,-,AluSx,SINE,Alu,-6,306,1,151079876,151080188 -6 - chr3 151080312 151080629 chr3,151080312,151080629,+,MER33,DNA,hAT-Charlie,1,323,-1,151080312,151080630 +6 + chr3 151751443 151751511 chr3,151751434,151751714,+,AluJr,SINE,Alu,13,312,0,151751422,151751714 -5 + chr3 151808144 151808249 chr3,151806183,151808619,+,HERVFH21-int,LTR,ERV1,62,2422,-4107,151806122,151812726 +5 + chr3 151917615 151917741 chr3,151917486,151917930,+,LTR78,LTR,ERV1,748,1191,-113,151916739,151918043 -3 + chr3 151927972 151928175 chr3,151927972,151929469,+,LTR12C,LTR,ERV1,3,1579,0,151927970,151929469 -1 + chr3 152118211 152118242 chr3,152118211,152118242,+,(TTTG)n,Simple_repeat,Simple_repeat,1,32,0,152118211,152118242 -6 + chr3 152118242 152118530 chr3,152118242,152118530,-,AluJb,SINE,Alu,-33,279,2,152118209,152118531 +6 - chr3 152118559 152118667 chr3,152118559,152118686,-,L2,LINE,L2,-556,2863,2737,152118003,152121422 +2 - chr3 152263850 152263937 chr3,152263850,152263937,+,L2b,LINE,L2,3240,3334,-41,152260611,152263978 -6 + chr3 152263935 152264298 chr3,152263935,152264298,+,L2a,LINE,L2,3031,3422,-4,152260905,152264302 -6 + chr3 152264527 152264682 chr3,152264527,152264682,+,MIR3,SINE,MIR,20,201,-7,152264508,152264689 -6 + chr3 152264840 152264963 chr3,152264840,152264963,+,(AT)n,Simple_repeat,Simple_repeat,1,131,0,152264840,152264963 -6 + chr3 152265387 152265423 chr3,152265387,152265423,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,152265387,152265423 -6 + chr3 152266984 152267093 chr3,152266984,152267093,+,L2c,LINE,L2,2929,3028,-359,152264056,152267452 -6 + chr3 152267093 152267213 chr3,152267093,152267213,-,FLAM_C,SINE,Alu,-19,124,1,152267074,152267213 +6 - chr3 152267213 152267496 chr3,152267213,152267496,+,L2c,LINE,L2,3029,3380,-7,152264185,152267503 -6 + chr3 152268640 152268683 chr3,152268640,152268683,+,(CGGCTC)n,Simple_repeat,Simple_repeat,1,45,0,152268640,152268683 -6 + chr3 152457949 152458000 chr3,152457949,152458000,+,(AT)n,Simple_repeat,Simple_repeat,1,52,0,152457949,152458000 -6 + chr3 152841263 152841298 chr3,152841263,152841298,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,152841263,152841298 +6 + chr3 153156511 153156644 chr3,153156349,153156644,-,AluSc,SINE,Alu,-14,295,2,153156335,153156645 +5 - chr3 153373686 153373896 chr3,153373628,153373896,-,LTR33C,LTR,ERVL,-308,321,35,153373320,153373930 -2 - chr3 153373937 153374101 chr3,153373937,153374101,+,L3,LINE,CR1,3648,3817,-282,153370290,153374383 +6 + chr3 153376863 153376895 chr3,153376863,153376904,+,A-rich,Low_complexity,Low_complexity,1,42,0,153376863,153376904 +4 + chr3 153377355 153377562 chr3,153377355,153378901,-,LTR12C,LTR,ERV1,0,1579,3,153377355,153378903 -5 - chr3 153386460 153386739 chr3,153386460,153386739,-,AluSc5,SINE,Alu,-30,279,1,153386430,153386739 +6 - chr3 153386739 153387368 chr3,153386739,153387384,+,L1ME1,LINE,L1,5159,5828,-351,153381581,153387735 -1 + chr3 153431856 153431898 chr3,153431839,153431898,-,L2a,LINE,L2,0,3426,3362,153431839,153435259 -1 - chr3 153440483 153440599 chr3,153440439,153440647,+,MamRTE1,LINE,RTE-BovB,2822,3032,-780,153437618,153441427 +3 + chr3 153443274 153443531 chr3,153443259,153443588,+,MLT1F,LTR,ERVL-MaLR,176,548,0,153443084,153443588 +5 + chr3 153534543 153534663 chr3,153534387,153534691,+,AluSc,SINE,Alu,1,304,-5,153534387,153534696 -3 + chr3 153604672 153604745 chr3,153604672,153604801,+,MIR,SINE,MIR,50,188,-74,153604623,153604875 -2 + chr3 153672175 153672257 chr3,153671843,153672512,+,FordPrefect,DNA,hAT-Tip100,579,1280,-403,153671265,153672915 -3 + chr3 153730755 153730807 chr3,153730486,153730826,+,L1MD,LINE,L1,2252,2597,-3549,153728235,153734375 -5 + chr3 153882357 153882412 chr3,153882135,153883120,-,L1MC3,LINE,L1,-14,7771,6720,153882121,153889839 -3 - chr3 153920351 153920415 chr3,153920067,153920485,+,MSTB1,LTR,ERVL-MaLR,2,431,-1,153920066,153920486 +3 + chr3 153936935 153937020 chr3,153936905,153937020,-,MIR3,SINE,MIR,-46,162,36,153936859,153937055 -2 - chr3 153940541 153940836 chr3,153940541,153941064,-,Tigger1,DNA,TcMar-Tigger,-1,2417,1874,153940540,153942937 -5 - chr3 153979930 153980186 chr3,153979573,153983404,+,L1PB1,LINE,L1,255,4211,-2651,153979319,153986055 -1 + chr3 154024411 154024441 chr3,154024411,154024441,+,(ATTT)n,Simple_repeat,Simple_repeat,1,30,0,154024411,154024441 -6 + chr3 154024441 154025051 chr3,154024441,154025051,-,L1PA7,LINE,L1,-18,6136,5519,154024423,154030569 +6 - chr3 154025104 154025127 chr3,154025104,154025127,+,(T)n,Simple_repeat,Simple_repeat,1,23,0,154025104,154025127 -6 + chr3 154025540 154025781 chr3,154025540,154025781,-,Tigger4a,DNA,TcMar-Tigger,0,236,1,154025540,154025781 +6 - chr3 154026400 154026485 chr3,154026400,154026485,+,Charlie2b,DNA,hAT-Charlie,6,95,-2687,154026395,154029172 -5 + chr3 154026495 154026537 chr3,154026495,154026537,+,Charlie2a,DNA,hAT-Charlie,181,222,-2639,154026315,154029176 -5 + chr3 154028406 154028457 chr3,154028401,154028457,-,MIR3,SINE,MIR,-34,174,109,154028367,154028565 +4 - chr3 154028883 154029040 chr3,154028883,154029040,+,L1ME4a,LINE,L1,5965,6119,-5,154022919,154029045 -6 + chr3 154032610 154032639 chr3,154032495,154032639,-,MIR3,SINE,MIR,-7,201,45,154032488,154032683 +4 - chr3 154032693 154032834 chr3,154032693,154032834,+,MER5A,DNA,hAT-Charlie,44,188,-1,154032650,154032835 -6 + chr3 154037597 154037654 chr3,154036865,154037663,+,L1ME3B,LINE,L1,159,942,-5300,154036707,154042963 -3 + chr3 154039385 154039530 chr3,154039227,154039530,+,AluSx,SINE,Alu,1,301,-11,154039227,154039541 -4 + chr3 154039530 154039574 chr3,154039530,154039574,+,L1M4a1,LINE,L1,1123,1181,-1398,154038408,154040972 -6 + chr3 154039645 154039666 chr3,154039645,154039745,+,(AAT)n,Simple_repeat,Simple_repeat,1,105,0,154039645,154039745 -1 + chr3 154108702 154108753 chr3,154108702,154108753,-,MIR3,SINE,MIR,-123,145,83,154108579,154108835 +6 - chr3 154110103 154110243 chr3,154109980,154110243,-,L1ME3B,LINE,L1,-758,5484,5172,154109222,154115414 +4 - chr3 154110257 154110351 chr3,154110257,154110477,-,AluSx4,SINE,Alu,-24,286,69,154110233,154110545 +1 - chr3 154119686 154119808 chr3,154119528,154119822,+,AluSp,SINE,Alu,1,294,-19,154119528,154119841 -3 + chr3 154334809 154334853 chr3,154334754,154334853,+,L2a,LINE,L2,3333,3426,0,154331422,154334853 -5 + chr3 154511535 154511595 chr3,154511406,154511595,+,MER103C,DNA,hAT-Charlie,112,297,0,154511295,154511595 -5 + chr3 154511712 154511769 chr3,154511712,154512128,+,LTR85a,LTR,Gypsy?,90,478,-224,154511623,154512352 -2 + chr3 154969606 154969682 chr3,154969606,154969811,+,MIRc,SINE,MIR,11,221,-47,154969596,154969858 -2 + chr3 154970103 154970179 chr3,154969892,154970179,-,L2c,LINE,L2,0,3387,3089,154969892,154973267 +4 - chr3 155158753 155158788 chr3,155158753,155158788,+,A-rich,Low_complexity,Low_complexity,1,35,0,155158753,155158788 -6 + chr3 155183190 155183285 chr3,155183190,155183309,+,MIR3,SINE,MIR,37,160,-48,155183154,155183357 -1 + chr3 155240979 155241043 chr3,155240979,155241043,+,(TCC)n,Simple_repeat,Simple_repeat,1,65,0,155240979,155241043 +6 + chr3 155241123 155241205 chr3,155241123,155241205,+,MamTip2,DNA,hAT-Tip100,146,233,-72,155240978,155241277 +6 + chr3 155241234 155241271 chr3,155241234,155241271,+,(AGAT)n,Simple_repeat,Simple_repeat,1,40,0,155241234,155241271 +6 + chr3 155241307 155241409 chr3,155241307,155241409,+,(GAGT)n,Simple_repeat,Simple_repeat,1,106,0,155241307,155241409 +6 + chr3 155241360 155241415 chr3,155241360,155241415,+,GA-rich,Low_complexity,Low_complexity,1,55,0,155241360,155241415 +6 + chr3 155290229 155290384 chr3,155289756,155290384,-,L1MC5a,LINE,L1,-2064,713,70,155287692,155290453 +5 - chr3 155290393 155290526 chr3,155290393,155290526,-,FLAM_C,SINE,Alu,0,143,1,155290393,155290526 +6 - chr3 155291188 155291291 chr3,155291186,155291387,+,MIRc,SINE,MIR,21,235,-33,155291166,155291420 +1 + chr3 155293994 155294176 chr3,155293994,155294195,+,MIRb,SINE,MIR,4,228,-40,155293991,155294235 +5 + chr3 155449397 155449425 chr3,155449397,155449514,+,MLT1I,LTR,ERVL-MaLR,286,411,0,155449112,155449514 +4 + chr3 155456688 155456727 chr3,155456452,155456727,+,L2c,LINE,L2,2212,2553,-866,155454241,155457593 +2 + chr3 155456796 155456874 chr3,155456796,155456874,+,L2c,LINE,L2,3070,3143,-232,155453727,155457106 +6 + chr3 155456880 155456917 chr3,155456880,155456917,-,MER45C,DNA,hAT-Tip100,-7,946,910,155456873,155457826 -6 - chr3 155456997 155457517 chr3,155456997,155457517,-,MER45C,DNA,hAT-Tip100,-431,522,1,155456566,155457517 -6 - chr3 155457517 155457688 chr3,155457517,155457688,+,L2c,LINE,L2,3139,3309,-78,155454379,155457766 +6 + chr3 155742142 155742224 chr3,155742139,155742224,+,L2c,LINE,L2,3291,3387,0,155738849,155742224 -5 + chr3 155743250 155743556 chr3,155743250,155743556,+,AluSx1,SINE,Alu,2,307,-5,155743249,155743561 -6 + chr3 156215560 156215738 chr3,156215308,156215867,-,L2c,LINE,L2,-2,3385,2821,156215306,156218687 +5 - chr3 156217977 156218036 chr3,156217865,156218060,+,L1PBa,LINE,L1,3,200,-6663,156217863,156224723 -3 + chr3 156446785 156446905 chr3,156446603,156447461,+,L2a,LINE,L2,2525,3421,-5,156444079,156447466 -1 + chr3 156671956 156672063 chr3,156671956,156672063,-,MLT1J,LTR,ERVL-MaLR,-97,415,307,156671859,156672369 +6 - chr3 156672397 156672597 chr3,156672397,156672597,+,L1MEg,LINE,L1,173,381,-5703,156672225,156678300 -6 + chr3 156672625 156672870 chr3,156672625,156672906,+,MLT1H2,LTR,ERVL-MaLR,4,337,-242,156672622,156673148 -1 + chr3 156673846 156673933 chr3,156673846,156673936,+,L2a,LINE,L2,3286,3426,0,156670561,156673936 -1 + chr3 156747346 156747367 chr3,156746831,156747367,+,Charlie1a,DNA,hAT-Charlie,27,550,-905,156746805,156748272 -5 + chr3 156747432 156747936 chr3,156747432,156747936,-,MLT1L,LTR,ERVL-MaLR,-49,561,12,156747383,156747947 +6 - chr3 156747969 156748038 chr3,156747969,156748038,+,MER5A,DNA,hAT-Charlie,1,69,-120,156747969,156748158 -6 + chr3 156748039 156748161 chr3,156748039,156748161,-,MER5A1,DNA,hAT-Charlie,-8,158,3,156748031,156748163 +6 - chr3 156748268 156748527 chr3,156748268,156748527,-,L2c,LINE,L2,0,3387,3116,156748268,156751642 +6 - chr3 156748717 156748769 chr3,156748717,156748769,+,MER5B,DNA,hAT-Charlie,1,64,-114,156748717,156748883 -6 + chr3 156748769 156749063 chr3,156748769,156749063,+,AluJb,SINE,Alu,1,297,-15,156748769,156749078 -6 + chr3 156749063 156749195 chr3,156749063,156749195,+,MER5B,DNA,hAT-Charlie,65,175,-3,156748999,156749198 -6 + chr3 156753204 156753452 chr3,156753204,156753529,+,MSTB1,LTR,ERVL-MaLR,1,419,-13,156753204,156753542 -2 + chr3 156817016 156817062 chr3,156817016,156817079,+,(GCG)n,Simple_repeat,Simple_repeat,1,64,0,156817016,156817079 -1 + chr3 157082300 157082418 chr3,157082300,157082418,-,L2b,LINE,L2,0,3375,3241,157082300,157085658 -6 - chr3 157082300 157082418 chr3,157082300,157082418,-,L2b,LINE,L2,0,3375,3241,157082300,157085658 +6 - chr3 157082795 157082831 chr3,157082795,157082831,+,(GCTCT)n,Simple_repeat,Simple_repeat,1,36,0,157082795,157082831 +6 + chr3 157082795 157082831 chr3,157082795,157082831,+,(GCTCT)n,Simple_repeat,Simple_repeat,1,36,0,157082795,157082831 -6 + chr3 157083151 157083239 chr3,157083151,157083239,+,L2c,LINE,L2,3271,3384,-3,157079881,157083242 -6 + chr3 157087890 157087947 chr3,157087890,157087947,+,A-rich,Low_complexity,Low_complexity,1,57,0,157087890,157087947 +6 + chr3 157100686 157100716 chr3,157100603,157100716,-,MER5A1,DNA,hAT-Charlie,-63,126,1,157100540,157100716 -2 - chr3 157100789 157101135 chr3,157100789,157101180,+,MLT1B,LTR,ERVL-MaLR,1,390,0,157100789,157101180 +5 + chr3 157101935 157101978 chr3,157101877,157101978,-,MIR,SINE,MIR,-111,151,50,157101766,157102027 +4 - chr3 157102023 157102092 chr3,157102023,157102472,+,MLT1C,LTR,ERVL-MaLR,3,467,0,157102021,157102472 -2 + chr3 157103358 157103479 chr3,157103176,157103504,+,AluJo,SINE,Alu,2,304,-8,157103175,157103512 -3 + chr3 157122876 157123004 chr3,157122796,157123135,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,157122796,157123135 +1 - chr3 157169117 157169133 chr3,157169117,157169250,+,MIRb,SINE,MIR,86,208,-60,157169032,157169310 +5 + chr3 157239852 157239964 chr3,157239852,157240243,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,157239852,157240243 -5 - chr3 158017064 158017168 chr3,158017012,158017365,-,MARNA,DNA,TcMar-Mariner,-25,561,207,158016987,158017571 +3 - chr3 158545220 158545421 chr3,158545188,158545421,-,AluY,SINE,Alu,0,311,80,158545188,158545500 +5 - chr3 158553858 158554041 chr3,158553848,158554147,-,MLT1J,LTR,ERVL-MaLR,-49,463,100,158553799,158554246 +5 - chr3 158561397 158561505 chr3,158561277,158561505,+,MER102b,DNA,hAT-Charlie,4,286,-2142,158561274,158563647 -3 + chr3 158570171 158570201 chr3,158570146,158570201,+,(TTTTCTC)n,Simple_repeat,Simple_repeat,1,56,0,158570146,158570201 -4 + chr3 158570240 158570647 chr3,158570240,158570647,-,MER113,DNA,hAT-Charlie,-1,520,99,158570239,158570745 +6 - chr3 158570815 158570941 chr3,158570815,158570941,-,MIR3,SINE,MIR,-8,200,85,158570807,158571025 +1 - chr3 158693416 158693565 chr3,158693416,158693565,-,MIR3,SINE,MIR,-14,194,31,158693402,158693595 +6 - chr3 158693743 158693768 chr3,158693743,158693896,-,MER5B,DNA,hAT-Charlie,-3,175,1,158693740,158693896 +1 - chr3 158695367 158695413 chr3,158695091,158695413,+,AluSx,SINE,Alu,1,306,-6,158695091,158695419 +1 + chr3 158732337 158732381 chr3,158732337,158732381,+,G-rich,Low_complexity,Low_complexity,1,45,0,158732337,158732381 +1 + chr3 158733951 158734037 chr3,158733934,158734360,-,L2a,LINE,L2,-1,3425,2955,158733933,158737314 -3 - chr3 158735721 158735932 chr3,158735538,158735932,-,MLT1J,LTR,ERVL-MaLR,-9,503,43,158735529,158735974 -1 - chr3 158735936 158736353 chr3,158735936,158736353,-,LTR16A2,LTR,ERVL,0,456,27,158735936,158736379 -6 - chr3 158736721 158736825 chr3,158736721,158736825,-,L1ME4b,LINE,L1,-780,112,1,158735941,158736825 -6 - chr3 158737232 158737400 chr3,158737232,158737400,+,L1ME4b,LINE,L1,287,457,-435,158736946,158737835 +6 + chr3 158737401 158737506 chr3,158737401,158737506,+,L2a,LINE,L2,3304,3414,-12,158734098,158737518 +6 + chr3 158737553 158737777 chr3,158737553,158737777,+,L1ME4b,LINE,L1,511,749,-143,158737043,158737920 +6 + chr3 158740391 158740466 chr3,158740391,158740617,+,MIR,SINE,MIR,9,262,0,158740383,158740617 +1 + chr3 158742056 158742144 chr3,158742056,158742153,-,MIR,SINE,MIR,-131,131,36,158741925,158742188 -4 - chr3 158742372 158742481 chr3,158742341,158742639,-,AluSx1,SINE,Alu,-3,309,1,158742338,158742639 -3 - chr3 158771006 158771089 chr3,158770794,158771136,+,MSTD,LTR,ERVL-MaLR,1,396,0,158770794,158771136 +5 + chr3 158783879 158784070 chr3,158783866,158784134,-,AluSz,SINE,Alu,-45,267,1,158783821,158784134 -5 - chr3 158801545 158801649 chr3,158801545,158801649,+,L2c,LINE,L2,3266,3368,-19,158798280,158801668 -6 + chr3 158870147 158870194 chr3,158870147,158870194,+,L2c,LINE,L2,3333,3380,-7,158866815,158870201 +6 + chr3 158870616 158870916 chr3,158870616,158870916,-,AluY,SINE,Alu,-18,293,1,158870598,158870916 -6 - chr3 158871808 158871821 chr3,158871808,158872120,+,MER102a,DNA,hAT-Charlie,1,330,0,158871808,158872120 +5 + chr3 159768369 159768427 chr3,159768369,159768427,-,MIR1_Amn,SINE,MIR,-154,76,23,159768215,159768449 +6 - chr3 159913434 159913604 chr3,159913434,159913604,-,L1MB7,LINE,L1,-8,6176,6006,159913426,159919609 +6 - chr3 159913605 159914236 chr3,159913605,159914236,-,L1M4a2,LINE,L1,-2010,646,8,159911595,159914243 +6 - chr3 159998204 159998317 chr3,159998204,159998404,+,MIRb,SINE,MIR,60,254,-14,159998145,159998418 -2 + chr3 160007782 160007875 chr3,160007759,160008068,+,AluY,SINE,Alu,1,307,-4,160007759,160008072 -3 + chr3 160011833 160012110 chr3,160011833,160012127,+,AluJb,SINE,Alu,1,292,-20,160011833,160012147 -2 + chr3 160015696 160015795 chr3,160015473,160015795,-,AluSx,SINE,Alu,0,312,2,160015473,160015796 +4 - chr3 160016024 160016080 chr3,160015946,160016117,-,MER5A1,DNA,hAT-Charlie,-3,163,1,160015943,160016117 -1 - chr3 160020646 160020724 chr3,160020379,160020724,+,L2a,LINE,L2,2887,3324,-102,160017493,160020826 +2 + chr3 160187198 160187320 chr3,160187111,160187320,-,MLT1J,LTR,ERVL-MaLR,0,610,288,160187111,160187607 +4 - chr3 160188798 160188934 chr3,160188776,160188954,+,FAM,SINE,Alu,1,176,-9,160188776,160188963 -3 + chr3 160753869 160753942 chr3,160753869,160753942,-,MIRc,SINE,MIR,0,268,189,160753869,160754130 +6 - chr3 160754157 160754315 chr3,160754157,160754315,-,L1ME4a,LINE,L1,-3,6121,5976,160754154,160760290 +6 - chr3 161427282 161427657 chr3,161427282,161427734,+,MLT1C,LTR,ERVL-MaLR,1,467,0,161427282,161427734 +4 + chr3 161446844 161446882 chr3,161446715,161446882,+,Charlie24,DNA,hAT-Charlie,2073,2253,-197,161444643,161447079 +2 + chr3 161446900 161447270 chr3,161446900,161447270,-,MLT1N2,LTR,ERVL-MaLR,-54,508,117,161446846,161447386 -6 - chr3 161447388 161447465 chr3,161447388,161447465,+,Charlie24,DNA,hAT-Charlie,2252,2324,-126,161445137,161447591 +6 + chr3 161447551 161447891 chr3,161447551,161447891,+,MLT1E1A,LTR,ERVL-MaLR,327,680,0,161447225,161447891 +6 + chr3 161447908 161448001 chr3,161447908,161448001,+,L1MC5,LINE,L1,7096,7191,-2113,161440813,161450114 +6 + chr3 161448008 161448242 chr3,161448008,161448408,+,L1MC5a,LINE,L1,647,1061,-1716,161447362,161450124 +5 + chr3 163127928 163128068 chr3,163127928,163128068,-,L1PB1,LINE,L1,-2914,3232,3083,163125014,163131150 +6 - chr3 163177306 163177553 chr3,163177306,163177553,+,L1PA14,LINE,L1,5578,5821,-655,163171729,163178208 -6 + chr3 163177553 163177879 chr3,163177553,163177879,+,L1PA14,LINE,L1,6156,6476,0,163171398,163177879 -6 + chr3 163182831 163182928 chr3,163182700,163183133,-,MLT1J,LTR,ERVL-MaLR,-45,467,2,163182655,163183134 +1 - chr3 163187068 163187242 chr3,163186962,163187242,+,MER57B1,LTR,ERV1,119,401,0,163186844,163187242 -4 + chr3 163187242 163187264 chr3,163187242,163187852,+,L1MC,LINE,L1,2535,3249,-2897,163184708,163190749 -2 + chr3 163203418 163203515 chr3,163203262,163203536,+,AluJb,SINE,Alu,3,276,-36,163203260,163203572 -3 + chr3 163207643 163207720 chr3,163207292,163207720,+,L1M5,LINE,L1,3566,3999,-2147,163203727,163209867 -4 + chr3 163207732 163207757 chr3,163207732,163207809,+,L1M5,LINE,L1,5066,5141,-1005,163202667,163208814 -2 + chr3 163207975 163207994 chr3,163207807,163207994,-,L1M5,LINE,L1,-957,5189,4997,163206850,163212990 -2 - chr3 163207994 163208094 chr3,163207994,163208382,+,THE1D,LTR,ERVL-MaLR,1,381,0,163207994,163208382 +4 + chr3 163219060 163219138 chr3,163215030,163219138,-,L1MA3,LINE,L1,0,7724,8,163215030,163219145 +5 - chr3 163220078 163220143 chr3,163219918,163220143,+,MLT1J2,LTR,ERVL-MaLR,55,324,-188,163219864,163220331 +1 + chr3 163219918 163220143 chr3,163219918,163220143,+,MLT1J2,LTR,ERVL-MaLR,55,324,-188,163219864,163220331 -1 + chr3 163230709 163230762 chr3,163229602,163230762,-,L1PA8,LINE,L1,-1367,4779,3614,163228235,163234375 -2 - chr3 163230765 163232135 chr3,163230765,163232135,+,L1PA8,LINE,L1,4798,6171,-1,163225968,163232136 +6 + chr3 163303196 163303322 chr3,163303098,163309113,+,L1MA1,LINE,L1,16,6160,-1405,163303083,163310518 -1 + chr3 163337145 163337236 chr3,163337124,163337254,+,FLAM_C,SINE,Alu,2,133,-10,163337123,163337264 -3 + chr3 163361444 163361563 chr3,163361423,163361744,+,AluY,SINE,Alu,1,295,-16,163361423,163361760 -1 + chr3 163478702 163478912 chr3,163478677,163478912,-,AluSq2,SINE,Alu,-9,304,73,163478668,163478984 -2 - chr3 163479173 163479365 chr3,163479173,163479632,-,L1M2,LINE,L1,-1181,4962,4493,163477992,163484124 -5 - chr3 164670878 164671044 chr3,164670874,164671044,-,L1MCa,LINE,L1,-4307,2444,2266,164666567,164673309 +5 - chr3 164671050 164671231 chr3,164671050,164671507,+,MLT2B1,LTR,ERVL,1,464,-56,164671050,164671563 -2 + chr3 164714240 164714482 chr3,164714240,164714648,-,MLT1C,LTR,ERVL-MaLR,-17,450,3,164714223,164714650 +2 - chr3 165150006 165150155 chr3,165149994,165150155,-,AluY,SINE,Alu,0,311,133,165149994,165150287 +5 - chr3 165150155 165150183 chr3,165150155,165150183,+,(TTTATT)n,Simple_repeat,Simple_repeat,1,28,0,165150155,165150183 -6 + chr3 165150183 165150264 chr3,165150183,165150264,-,AluY,SINE,Alu,-194,117,37,165149989,165150300 +6 - chr3 165150406 165150476 chr3,165150406,165150476,+,A-rich,Low_complexity,Low_complexity,1,71,0,165150406,165150476 -6 + chr3 165150408 165150460 chr3,165150408,165150460,+,GA-rich,Low_complexity,Low_complexity,1,52,0,165150408,165150460 -6 + chr3 165151047 165151215 chr3,165151047,165151215,+,MER96,DNA,hAT-Tip100,1,174,-1,165151047,165151216 -6 + chr3 165151384 165151515 chr3,165151384,165151515,+,FLAM_A,SINE,Alu,1,132,-10,165151384,165151525 -6 + chr3 165345472 165345525 chr3,165345424,165345605,+,THE1D,LTR,ERVL-MaLR,212,379,-2,165345213,165345607 +3 + chr3 165460452 165460632 chr3,165460159,165460711,+,MLT2B4,LTR,ERVL,1,552,-4,165460159,165460715 +5 + chr3 165548838 165548895 chr3,165548053,165548895,+,MER11D,LTR,ERVK,1,897,0,165548053,165548895 +1 + chr3 165580859 165580971 chr3,165580675,165580971,-,AluJb,SINE,Alu,-28,284,3,165580647,165580973 -2 - chr3 165580971 165581054 chr3,165580971,165581158,+,L1ME3A,LINE,L1,1605,1792,-4450,165579367,165585608 +5 + chr3 165654109 165654195 chr3,165654036,165654470,-,L1MB8,LINE,L1,-1149,5170,4731,165652887,165659200 -3 - chr3 165655181 165655423 chr3,165655169,165657114,+,L1P2,LINE,L1,1,1975,-4209,165655169,165661323 +5 + chr3 166569693 166569705 chr3,166569680,166569705,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,166569680,166569705 -5 + chr3 166835021 166835462 chr3,166834499,166835462,-,L1MA10,LINE,L1,-44,6290,5293,166834455,166840754 +5 - chr3 166835468 166835675 chr3,166835468,166835675,-,L1MA10,LINE,L1,-803,5343,5132,166834665,166840806 +6 - chr3 166844879 166844956 chr3,166844346,166845440,+,FordPrefect,DNA,hAT-Tip100,119,1270,-413,166844228,166845853 -1 + chr3 167392796 167392865 chr3,167392788,167392981,-,L2a,LINE,L2,-932,2487,2292,167391856,167395272 -1 - chr3 167399505 167399577 chr3,167399505,167399659,-,L2c,LINE,L2,-223,3164,3012,167399282,167402670 -4 - chr3 167401337 167401437 chr3,167401328,167401866,-,MER41A,LTR,ERV1,0,554,1,167401328,167401866 -3 - chr3 167408239 167408373 chr3,167408182,167408373,+,MLT1J,LTR,ERVL-MaLR,1,197,-315,167408182,167408688 +2 + chr3 167866899 167866930 chr3,167866899,167867237,+,L1ME4a,LINE,L1,5477,5826,-298,167861423,167867535 +4 + chr3 167870905 167870972 chr3,167870900,167871469,-,MER39,LTR,ERV1,-1,706,133,167870899,167871601 -1 - chr3 167870900 167870977 chr3,167870900,167871469,-,MER39,LTR,ERV1,-1,706,133,167870899,167871601 +1 - chr3 167876880 167876915 chr3,167876880,167876915,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,167876880,167876915 +6 + chr3 167878920 167878965 chr3,167878279,167879419,-,L1MC5,LINE,L1,-907,5239,4133,167877372,167883551 -3 - chr3 167921944 167921964 chr3,167921876,167921964,+,MLT1L,LTR,ERVL-MaLR,520,608,-2,167921357,167921966 +2 + chr3 167922996 167923058 chr3,167922996,167923058,-,L3,LINE,CR1,-184,3915,3853,167922812,167926910 -6 - chr3 168291140 168291228 chr3,168290934,168291234,+,AluSp,SINE,Alu,1,313,0,168290934,168291234 +5 + chr3 168903366 168903469 chr3,168903177,168903469,+,AluSc,SINE,Alu,1,292,-17,168903177,168903486 +1 + chr3 168921732 168921831 chr3,168921631,168921831,-,MIRb,SINE,MIR,-34,234,8,168921597,168921838 -2 - chr3 168927611 168927902 chr3,168927611,168927902,+,L2a,LINE,L2,3117,3425,-1,168924495,168927903 +6 + chr3 169447867 169447935 chr3,169447527,169447947,-,L2c,LINE,L2,-17,3370,2923,169447510,169450869 -1 - chr3 169613771 169613821 chr3,169613771,169613876,-,L2b,LINE,L2,-4,3371,3263,169613767,169617138 +2 - chr3 169614879 169614990 chr3,169614879,169615085,+,MIR,SINE,MIR,1,250,-12,169614879,169615097 -2 + chr3 169777192 169777312 chr3,169777183,169777312,-,Tigger16a,DNA,TcMar-Tigger,-281,676,527,169776902,169777838 +5 - chr3 169777480 169777502 chr3,169777480,169777502,+,(GT)n,Simple_repeat,Simple_repeat,1,22,0,169777480,169777502 -6 + chr3 169777547 169777646 chr3,169777547,169777646,-,MIR3,SINE,MIR,-55,153,55,169777492,169777700 +6 - chr3 169777880 169777947 chr3,169777880,169777947,+,MER5A1,DNA,hAT-Charlie,1,69,-97,169777880,169778044 -6 + chr3 169777947 169778225 chr3,169777947,169778225,+,AluJr,SINE,Alu,1,297,-15,169777947,169778240 -6 + chr3 169778225 169778322 chr3,169778225,169778322,+,MER5A1,DNA,hAT-Charlie,70,163,-3,169778156,169778325 -6 + chr3 169780056 169780334 chr3,169780056,169780357,-,AluY,SINE,Alu,-11,300,1,169780045,169780357 +1 - chr3 169795508 169795568 chr3,169795508,169795568,+,X9_LINE,LINE,L1,439,502,-434,169795070,169796002 +6 + chr3 169939353 169939490 chr3,169939341,169939490,+,LTR78,LTR,ERV1,1051,1201,-103,169938291,169939593 -5 + chr3 169943516 169943549 chr3,169943516,169943549,-,AluSz6,SINE,Alu,-20,292,260,169943496,169943808 +6 - chr3 169943779 169943968 chr3,169943779,169943968,-,Tigger1a_Art,DNA,TcMar-Tigger,0,497,279,169943779,169944246 +6 - chr3 169943964 169944080 chr3,169943964,169944080,-,Tigger1a_Art,DNA,TcMar-Tigger,-358,139,24,169943606,169944103 +6 - chr3 169944738 169945048 chr3,169944738,169945048,+,AluSx,SINE,Alu,1,310,-2,169944738,169945050 -6 + chr3 169947001 169947117 chr3,169947001,169947117,-,L2b,LINE,L2,0,3375,3250,169947001,169950366 +6 - chr3 169947156 169947194 chr3,169947156,169947194,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,169947156,169947194 -6 + chr3 169966231 169966357 chr3,169966231,169966357,+,MIR3,SINE,MIR,26,143,-65,169966206,169966422 -1 + chr3 169966447 169966552 chr3,169966447,169966552,+,MER5A,DNA,hAT-Charlie,78,183,-6,169966370,169966558 -6 + chr3 169978536 169978561 chr3,169978443,169978741,+,AluSz6,SINE,Alu,1,298,-14,169978443,169978755 -5 + chr3 169985396 169985540 chr3,169985245,169985540,-,AluSx1,SINE,Alu,-16,296,1,169985229,169985540 +4 - chr3 170088883 170089184 chr3,170088883,170089184,+,AluSz,SINE,Alu,1,302,-10,170088883,170089194 +6 + chr3 170353579 170353759 chr3,170353579,170353759,+,FAM,SINE,Alu,1,178,-7,170353579,170353766 +6 + chr3 170656884 170656937 chr3,170656884,170656956,-,L2c,LINE,L2,-229,3158,3092,170656655,170660047 -4 - chr3 170659945 170660016 chr3,170659945,170660016,+,L2c,LINE,L2,2911,2987,-400,170657035,170660416 +6 + chr3 170660016 170660376 chr3,170660016,170660376,-,MLT1B,LTR,ERVL-MaLR,0,390,1,170660016,170660376 -6 - chr3 170660376 170660533 chr3,170660376,170660533,+,L2c,LINE,L2,2988,3163,-224,170657389,170660757 +6 + chr3 170660650 170660775 chr3,170660650,170660775,+,MER5B,DNA,hAT-Charlie,3,134,-44,170660648,170660819 +6 + chr3 170660925 170660998 chr3,170660925,170660998,+,LTR67B,LTR,ERVL,92,165,-455,170660834,170661453 +6 + chr3 170661066 170661144 chr3,170661066,170661144,-,MIRb,SINE,MIR,-6,262,186,170661060,170661329 -6 - chr3 170661144 170661669 chr3,170661144,170661669,-,L1MB5,LINE,L1,-13,6161,5640,170661131,170667308 -6 - chr3 170661669 170661715 chr3,170661669,170661715,-,MIRc,SINE,MIR,-83,185,117,170661586,170661831 -6 - chr3 170661715 170662115 chr3,170661715,170662115,+,L1PB2,LINE,L1,5759,6151,0,170655957,170662115 +6 + chr3 170740351 170740533 chr3,170740312,170740705,-,MLT1B,LTR,ERVL-MaLR,-11,379,1,170740301,170740705 +5 - chr3 171899174 171899265 chr3,171899157,171899465,+,AluJb,SINE,Alu,7,308,-4,171899151,171899469 -3 + chr3 172301654 172301873 chr3,172301582,172301873,+,AluJb,SINE,Alu,2,298,-14,172301581,172301887 -5 + chr3 172302836 172302918 chr3,172302836,172302918,+,(TG)n,Simple_repeat,Simple_repeat,1,82,0,172302836,172302918 -6 + chr3 172302921 172302954 chr3,172302921,172302954,+,(GA)n,Simple_repeat,Simple_repeat,1,34,0,172302921,172302954 -6 + chr3 172302980 172303052 chr3,172302980,172303109,+,(ATAT)n,Simple_repeat,Simple_repeat,1,132,0,172302980,172303109 -1 + chr3 172560888 172561069 chr3,172560635,172561456,+,Tigger3b,DNA,TcMar-Tigger,2,773,-458,172560634,172561914 -5 + chr3 172590713 172593714 chr3,172590243,172593721,-,L1PREC2,LINE,L1,-4262,3893,579,172585981,172594299 +5 - chr3 173153737 173153758 chr3,173153704,173153947,+,MLT1C,LTR,ERVL-MaLR,1,243,-224,173153704,173154171 +1 + chr3 173259695 173259781 chr3,173259642,173259781,+,MLT1J2,LTR,ERVL-MaLR,1,148,-364,173259642,173260145 +2 + chr3 173260475 173260488 chr3,173260261,173260488,+,MER58A,DNA,hAT-Charlie,1,224,0,173260261,173260488 +2 + chr3 173336548 173336594 chr3,173336525,173336781,-,MamRTE1,LINE,RTE-BovB,-2749,1063,808,173333776,173337588 -3 - chr3 173336759 173336781 chr3,173336525,173336781,-,MamRTE1,LINE,RTE-BovB,-2749,1063,808,173333776,173337588 -2 - chr3 173336784 173336965 chr3,173336784,173337048,+,AluJo,SINE,Alu,11,298,-14,173336774,173337062 +5 + chr3 173910734 173910869 chr3,173910734,173910932,+,MIRc,SINE,MIR,11,232,-36,173910724,173910968 -2 + chr3 173920725 173920770 chr3,173920725,173920770,+,LFSINE_Vert,SINE,tRNA,384,428,-31,173920342,173920801 -6 + chr3 175079307 175079471 chr3,175078416,175079471,-,L1MB8,LINE,L1,-13,6165,5107,175078403,175084577 +5 - chr3 175234861 175234975 chr3,175234737,175234975,+,MIR,SINE,MIR,7,258,-4,175234731,175234979 -5 + chr3 175774943 175774966 chr3,175774666,175774966,+,MER33,DNA,hAT-Charlie,1,323,-1,175774666,175774967 -4 + chr3 175775092 175775109 chr3,175775092,175775109,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,175775092,175775109 -6 + chr3 175810067 175810105 chr3,175810067,175810105,+,(TTGTCA)n,Simple_repeat,Simple_repeat,1,40,0,175810067,175810105 +6 + chr3 175938997 175939975 chr3,175938997,175939975,+,L1MCb,LINE,L1,2380,3380,-3184,175936618,175943159 -6 + chr3 175939985 175941037 chr3,175939985,175941418,+,L1PA15-16,LINE,L1,14,1542,-5324,175939972,175946742 -1 + chr3 176643941 176644123 chr3,176643870,176644277,+,MLT1A,LTR,ERVL-MaLR,1,374,0,176643870,176644277 -5 + chr3 176814175 176814379 chr3,176814175,176814379,-,MIRb,SINE,MIR,-16,252,20,176814159,176814398 +6 - chr3 176814785 176814808 chr3,176814785,176814808,+,(AGAA)n,Simple_repeat,Simple_repeat,1,25,0,176814785,176814808 -6 + chr3 176815572 176815726 chr3,176815572,176815800,+,MIRb,SINE,MIR,27,255,-13,176815546,176815813 -2 + chr3 176816215 176816239 chr3,176816215,176816239,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,176816215,176816239 -6 + chr3 176816331 176816421 chr3,176816331,176816421,+,MIR3,SINE,MIR,23,116,-92,176816309,176816513 -6 + chr3 176816442 176816587 chr3,176816442,176816587,+,MER101B,LTR,ERV1,13,144,-426,176816430,176817013 -6 + chr3 176816587 176816891 chr3,176816587,176816891,-,AluY,SINE,Alu,-9,302,2,176816578,176816892 +6 - chr3 176816891 176817001 chr3,176816891,176817113,+,MER101B,LTR,ERV1,145,411,-159,176816747,176817272 -1 + chr3 176853709 176853768 chr3,176853353,176853946,-,L3,LINE,CR1,-1165,2934,2292,176852188,176856237 +3 - chr3 176867701 176867838 chr3,176867601,176867838,+,L1M1,LINE,L1,53,288,-7277,176867549,176875115 -1 + chr3 177037405 177037744 chr3,177037351,177037772,+,MLT2B1,LTR,ERVL,2,460,-60,177037350,177037832 +1 + chr3 177321429 177321486 chr3,177321387,177321486,-,L2c,LINE,L2,-2,3385,3296,177321385,177324781 -2 - chr3 177322025 177322105 chr3,177322025,177322105,-,AluYh7,SINE,Alu,-17,294,216,177322008,177322320 -6 - chr3 177322213 177322510 chr3,177322213,177322510,-,AluY,SINE,Alu,-13,298,2,177322200,177322511 -6 - chr3 177338427 177338524 chr3,177338304,177338560,+,AluSq2,SINE,Alu,1,291,-22,177338304,177338582 -3 + chr3 177539456 177539493 chr3,177539456,177539691,-,MER102a,DNA,hAT-Charlie,0,330,112,177539456,177539802 -4 - chr3 177621382 177621392 chr3,177621199,177621392,-,MIR,SINE,MIR,-6,256,47,177621193,177621438 +5 - chr3 177621513 177621945 chr3,177621513,177622510,+,L1MC5a,LINE,L1,1695,2710,-67,177619819,177622577 -2 + chr3 177622627 177622703 chr3,177622564,177622799,+,MIR,SINE,MIR,22,262,0,177622543,177622799 -3 + chr3 177628206 177628287 chr3,177628122,177628491,-,THE1B,LTR,ERVL-MaLR,0,364,1,177628122,177628491 +1 - chr3 177691146 177691250 chr3,177691146,177691301,+,MIR3,SINE,MIR,58,207,-1,177691089,177691302 +5 + chr3 177816865 177816902 chr3,177816770,177816902,+,LTR78B,LTR,ERV1,8,137,-1159,177816763,177818061 +1 + chr3 177895613 177895741 chr3,177895586,177895741,-,FRAM,SINE,Alu,-11,165,5,177895575,177895745 -2 - chr3 177896609 177898078 chr3,177896609,177898078,+,L1M3c,LINE,L1,2,1566,-4575,177896608,177902653 +5 + chr3 177898082 177898280 chr3,177898082,177898280,+,MER44A,DNA,TcMar-Tigger,5,227,-112,177898078,177898392 +6 + chr3 177898281 177898848 chr3,177898281,177898848,+,MER52D,LTR,ERV1,3,977,-1146,177898279,177899994 +6 + chr3 177898851 177899224 chr3,177898851,177900125,+,LTR2752,LTR,ERV1,1,1263,0,177898851,177900125 +5 + chr3 177937602 177937662 chr3,177937602,177937749,+,MIR3,SINE,MIR,25,167,-41,177937578,177937790 +5 + chr3 177959745 177959798 chr3,177959728,177961250,+,L2a,LINE,L2,1673,3426,0,177958056,177961250 -1 + chr3 178202053 178202179 chr3,178202053,178202179,-,MIRc,SINE,MIR,-117,151,16,178201936,178202194 +6 - chr3 178278023 178278057 chr3,178278023,178278077,+,Alu,SINE,Alu,245,298,-3,178277779,178278080 -2 + chr3 178333539 178335413 chr3,178332657,178335413,-,L1PA13,LINE,L1,-3834,2932,3,178328823,178335415 +5 - chr3 178371751 178371819 chr3,178371717,178372080,-,L2a,LINE,L2,-1,3425,3033,178371716,178375112 +3 - chr3 178746939 178747067 chr3,178745499,178747067,-,THE1B-int,LTR,ERVL-MaLR,0,1580,1,178745499,178747067 +5 - chr3 178747067 178747111 chr3,178747067,178747418,-,THE1B,LTR,ERVL-MaLR,0,364,1,178747067,178747418 +2 - chr3 178748988 178749045 chr3,178748801,178749045,-,MER124,DNA?,DNA?,-116,281,30,178748685,178749074 +5 - chr3 178749055 178749236 chr3,178749055,178749244,+,MIRb,SINE,MIR,2,207,-55,178749054,178749299 -2 + chr3 178801793 178801840 chr3,178801574,178801840,-,L2,LINE,L2,-1192,2227,1972,178800382,178803811 +4 - chr3 178801845 178801936 chr3,178801845,178801979,+,L2a,LINE,L2,3272,3425,-1,178798574,178801980 -1 + chr3 178841545 178841616 chr3,178841461,178841831,-,THE1D,LTR,ERVL-MaLR,0,381,1,178841461,178841831 +3 - chr3 178859489 178859623 chr3,178859449,178859641,+,AluJr,SINE,Alu,120,299,-13,178859330,178859654 -1 + chr3 178860294 178860405 chr3,178859948,178865979,+,L1PA2,LINE,L1,124,6155,0,178859825,178865979 -1 + chr3 179101524 179101555 chr3,179101524,179101723,+,Charlie18a,DNA,hAT-Charlie,31,239,-103,179101494,179101826 -2 + chr3 179132769 179132866 chr3,179126722,179132866,-,L1PA3,LINE,L1,0,6155,1,179126722,179132866 +4 - chr3 179341076 179341171 chr3,179341076,179341171,-,AluJb,SINE,Alu,-217,95,1,179340859,179341171 -6 - chr3 179341306 179341660 chr3,179341306,179341660,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,179341306,179341660 +6 + chr3 179397743 179397993 chr3,179397743,179398028,-,AluSg7,SINE,Alu,-19,290,1,179397724,179398028 -4 - chr3 179397743 179398028 chr3,179397743,179398028,-,AluSg7,SINE,Alu,-19,290,1,179397724,179398028 +6 - chr3 179398284 179398538 chr3,179398232,179398538,+,AluSz6,SINE,Alu,1,298,-14,179398232,179398552 +5 + chr3 179399155 179399191 chr3,179399155,179399201,+,(ATATAA)n,Simple_repeat,Simple_repeat,1,43,0,179399155,179399201 +5 + chr3 179405474 179405583 chr3,179405474,179405583,+,MIRb,SINE,MIR,47,154,-114,179405428,179405697 +6 + chr3 179405768 179405866 chr3,179405768,179405866,-,MER46C,DNA,TcMar-Tigger,-1,337,246,179405767,179406111 -6 - chr3 179583678 179583762 chr3,179583678,179583853,-,L2c,LINE,L2,-70,3317,3137,179583608,179586989 +1 - chr3 179584345 179584410 chr3,179584345,179584635,+,AluSx1,SINE,Alu,2,306,-6,179584344,179584641 -1 + chr3 179804285 179804366 chr3,179804285,179804478,+,Charlie23a,DNA,hAT-Charlie,111,339,0,179804175,179804478 +5 + chr3 179881164 179881239 chr3,179881164,179881239,-,MamSINE1,SINE,tRNA-RTE,-67,223,154,179881097,179881392 -6 - chr3 179881421 179881604 chr3,179881421,179881604,+,MIRb,SINE,MIR,68,268,0,179881354,179881604 +6 + chr3 179902066 179902086 chr3,179902066,179902288,-,MIRb,SINE,MIR,-30,238,9,179902036,179902296 -4 - chr3 180584348 180584520 chr3,180584271,180584520,-,MLT1K,LTR,ERVL-MaLR,-5,590,335,180584266,180584854 +4 - chr3 180584532 180584677 chr3,180584532,180584708,+,AluSx3,SINE,Alu,130,307,-4,180584403,180584712 -2 + chr3 180680128 180680190 chr3,180680128,180680318,+,MER102a,DNA,hAT-Charlie,83,319,-11,180680046,180680329 +4 + chr3 181003775 181003933 chr3,181002338,181004892,-,L1P3,LINE,L1,-3831,2630,80,180998507,181004971 -3 - chr3 181030570 181030588 chr3,181030566,181030588,-,L1MEg2,LINE,L1,-5550,902,884,181025016,181031471 -2 - chr3 181030601 181030638 chr3,181030601,181030638,+,(AAAAG)n,Simple_repeat,Simple_repeat,1,39,0,181030601,181030638 +6 + chr3 181030645 181030689 chr3,181030645,181031008,-,L1M4,LINE,L1,-7105,412,15,181023540,181031022 -4 - chr3 181421195 181421273 chr3,181421195,181421273,+,MADE2,DNA,TcMar-Mariner,1,79,-1,181421195,181421274 -6 + chr3 181421402 181421460 chr3,181421402,181421480,+,MIRc,SINE,MIR,57,156,-112,181421346,181421592 -2 + chr3 181438598 181438699 chr3,181438569,181438904,-,MamRep4096,DNA,hAT-Tip100,-26,400,5,181438543,181438908 +3 - chr3 181534612 181534643 chr3,181534612,181534643,+,(TTAT)n,Simple_repeat,Simple_repeat,1,31,0,181534612,181534643 -5 + chr3 181550754 181550826 chr3,181550497,181551056,+,MER119,DNA,hAT-Charlie,1,542,-41,181550497,181551097 +1 + chr3 181601311 181601389 chr3,181601187,181601553,+,MER47B,DNA,TcMar-Tigger,1,364,-54,181601187,181601607 +3 + chr3 181610406 181610490 chr3,181610406,181610490,+,A-rich,Low_complexity,Low_complexity,1,84,0,181610406,181610490 +6 + chr3 181671599 181671741 chr3,181671599,181672741,+,Charlie1a,DNA,hAT-Charlie,173,1378,-77,181671427,181672818 +5 + chr3 181699495 181699542 chr3,181699495,181699542,+,(CT)n,Simple_repeat,Simple_repeat,1,48,0,181699495,181699542 +1 + chr3 181699964 181699993 chr3,181699964,181699993,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,181699964,181699993 +6 + chr3 181740317 181740369 chr3,181740317,181740369,+,(CA)n,Simple_repeat,Simple_repeat,1,52,0,181740317,181740369 +6 + chr3 181741215 181741248 chr3,181741215,181741248,+,A-rich,Low_complexity,Low_complexity,1,33,0,181741215,181741248 +5 + chr3 181741392 181741417 chr3,181741392,181741417,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,181741392,181741417 +6 + chr3 181783625 181783650 chr3,181782131,181783650,-,HAL1,LINE,L1,-47,2460,822,181782084,181784471 -2 - chr3 181783650 181783763 chr3,181783650,181783763,-,MER30B,DNA,hAT-Charlie,0,190,78,181783650,181783840 -6 - chr3 181783771 181783836 chr3,181783771,181784100,+,AluY,SINE,Alu,2,311,0,181783770,181784100 +5 + chr3 181814213 181814303 chr3,181814192,181814488,-,AluSz,SINE,Alu,-15,297,2,181814177,181814489 -5 - chr3 181825628 181825744 chr3,181825584,181825878,-,AluSx1,SINE,Alu,-14,298,3,181825570,181825880 -1 - chr3 181836835 181836862 chr3,181836835,181836862,+,A-rich,Low_complexity,Low_complexity,1,29,0,181836835,181836862 +6 + chr3 181952534 181952827 chr3,181952534,181952827,-,AluSx1,SINE,Alu,-10,302,1,181952524,181952827 -6 - chr3 181957213 181957241 chr3,181957213,181957241,+,A-rich,Low_complexity,Low_complexity,1,28,0,181957213,181957241 +6 + chr3 181963496 181963521 chr3,181963496,181963587,+,L2c,LINE,L2,3304,3387,0,181960193,181963587 +5 + chr3 181967062 181967161 chr3,181967062,181967267,+,L2,LINE,L2,2414,2633,-786,181964649,181968053 +4 + chr3 181967490 181967523 chr3,181967490,181967523,+,(AATG)n,Simple_repeat,Simple_repeat,1,34,0,181967490,181967523 +6 + chr3 181967690 181967946 chr3,181967690,181968242,-,L2,LINE,L2,-957,2462,1817,181966733,181970058 -1 - chr3 181971287 181971377 chr3,181971287,181971377,-,L1PA8,LINE,L1,-14,6158,6044,181971273,181977420 -6 - chr3 181971804 181971826 chr3,181971804,181971826,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,181971804,181971826 +6 + chr3 182001165 182001416 chr3,182001165,182001416,-,L2b,LINE,L2,-10,3365,3110,182001155,182004525 -6 - chr3 182001828 182001925 chr3,182001828,182001925,-,L2c,LINE,L2,-34,3353,3252,182001794,182005176 -6 - chr3 182002083 182002237 chr3,182002083,182002237,-,MIR,SINE,MIR,-22,186,12,182002061,182002248 -6 - chr3 182002486 182002576 chr3,182002486,182002576,+,MER5B,DNA,hAT-Charlie,4,103,-75,182002483,182002651 +6 + chr3 182002981 182003115 chr3,182002981,182003115,+,FLAM_C,SINE,Alu,1,133,0,182002981,182003115 +6 + chr3 182004189 182004368 chr3,182004189,182004368,-,MIRb,SINE,MIR,-29,239,47,182004160,182004414 -6 - chr3 182004376 182004495 chr3,182004376,182004495,-,MIR3,SINE,MIR,-52,156,14,182004324,182004508 -6 - chr3 182005179 182005235 chr3,182005179,182005235,-,MIRb,SINE,MIR,-195,73,19,182004984,182005253 -6 - chr3 182006178 182006289 chr3,182006178,182006289,+,L2c,LINE,L2,3268,3384,-3,182002911,182006292 +6 + chr3 182007437 182007701 chr3,182007437,182007701,-,L2b,LINE,L2,-3,3372,3083,182007434,182010783 -6 - chr3 182007812 182008403 chr3,182007812,182008403,-,MLT1L,LTR,ERVL-MaLR,-18,592,3,182007794,182008405 -6 - chr3 182008411 182008510 chr3,182008411,182008510,-,L2b,LINE,L2,-555,2864,2767,182007856,182011276 -6 - chr3 182008759 182008932 chr3,182008759,182008932,-,MIR3,SINE,MIR,-5,203,30,182008754,182008961 -6 - chr3 182008974 182009150 chr3,182008974,182009150,+,MamTip2,DNA,hAT-Tip100,44,232,-73,182008931,182009223 +6 + chr3 182009659 182009863 chr3,182009659,182009863,-,MIR3,SINE,MIR,-8,200,10,182009651,182009872 -6 - chr3 182010438 182010472 chr3,182010438,182010472,+,A-rich,Low_complexity,Low_complexity,1,34,0,182010438,182010472 +6 + chr3 182447135 182447192 chr3,182447135,182447192,+,L2c,LINE,L2,3317,3386,-1,182443819,182447193 -6 + chr3 182447194 182447229 chr3,182447194,182447229,+,A-rich,Low_complexity,Low_complexity,1,36,0,182447194,182447229 -6 + chr3 182447256 182447377 chr3,182447256,182447377,-,L2a,LINE,L2,-8,3418,3293,182447248,182450669 +6 - chr3 182448362 182448414 chr3,182448362,182448528,+,MIR,SINE,MIR,83,246,-16,182448280,182448544 -2 + chr3 182448728 182448839 chr3,182448696,182448950,+,Charlie1b,DNA,hAT-Charlie,77,330,-193,182448620,182449143 -3 + chr3 182471102 182471181 chr3,182469200,182471636,+,ERVL-E-int,LTR,ERVL,2787,5276,-391,182466414,182472027 -3 + chr3 182498264 182498321 chr3,182498206,182498321,-,L2a,LINE,L2,0,3426,3306,182498206,182501626 +5 - chr3 182504138 182504304 chr3,182504138,182504304,-,Charlie16a,DNA,hAT-Charlie,-116,226,72,182504022,182504375 +6 - chr3 182504363 182504454 chr3,182504363,182504533,+,MIR3,SINE,MIR,39,201,-7,182504325,182504540 -2 + chr3 182644818 182644887 chr3,182644655,182644887,+,L2c,LINE,L2,3137,3378,-9,182641519,182644896 +2 + chr3 182649883 182649983 chr3,182649679,182649983,-,AluSz,SINE,Alu,-6,306,9,182649673,182649991 -2 - chr3 182740113 182740405 chr3,182740113,182740405,+,AluSc,SINE,Alu,6,297,-12,182740108,182740417 -6 + chr3 182783250 182783384 chr3,182783250,182783384,-,AluJr4,SINE,Alu,-180,132,1,182783070,182783384 +6 - chr3 182784225 182784249 chr3,182784225,182784249,+,(TACA)n,Simple_repeat,Simple_repeat,1,25,0,182784225,182784249 -6 + chr3 183016255 183016281 chr3,183016232,183016530,-,AluSz,SINE,Alu,-17,295,1,183016215,183016530 -1 - chr3 183017376 183017472 chr3,183017376,183017472,+,L1MA8,LINE,L1,6174,6266,-25,183011203,183017497 +6 + chr3 183548785 183548963 chr3,183548785,183549181,+,L1PA8,LINE,L1,5783,6172,0,183543003,183549181 +4 + chr3 183552053 183552326 chr3,183551864,183552332,+,L1MC5a,LINE,L1,64,546,-346,183551801,183552678 +5 + chr3 183806457 183806540 chr3,183806425,183806540,+,L1ME4a,LINE,L1,5971,6082,-42,183800455,183806582 -5 + chr3 183806717 183806752 chr3,183806717,183806752,-,MIR3,SINE,MIR,-2,206,172,183806715,183806923 +6 - chr3 183807163 183807214 chr3,183807163,183807214,+,(CAGACC)n,Simple_repeat,Simple_repeat,1,51,0,183807163,183807214 -6 + chr3 183808730 183808879 chr3,183808573,183808879,+,AluSz,SINE,Alu,1,306,-6,183808573,183808885 -4 + chr3 183809468 183809515 chr3,183809468,183809692,-,MIRb,SINE,MIR,-23,245,1,183809445,183809692 +1 - chr3 184011316 184011419 chr3,184011316,184012009,+,L1MD2,LINE,L1,5397,6129,-230,184005920,184012239 +5 + chr3 184095118 184095235 chr3,184094913,184095235,+,L1M3,LINE,L1,4998,5324,-816,184089916,184096051 -5 + chr3 184095245 184095350 chr3,184095245,184095542,+,AluJr,SINE,Alu,12,307,-5,184095234,184095547 -2 + chr3 184105126 184105178 chr3,184105076,184105194,+,L2a,LINE,L2,3303,3426,0,184101774,184105194 -1 + chr3 184132942 184133145 chr3,184132596,184133145,+,L1ME3Cz,LINE,L1,5374,5804,-2078,184127223,184135223 -5 + chr3 184133153 184133383 chr3,184133153,184133383,-,MIR,SINE,MIR,-3,259,11,184133150,184133393 +6 - chr3 184133401 184133474 chr3,184133401,184133474,+,(TGTA)n,Simple_repeat,Simple_repeat,1,74,0,184133401,184133474 -6 + chr3 184134019 184134075 chr3,184133939,184134075,-,L3b,LINE,CR1,-242,4990,4855,184133697,184138929 +5 - chr3 184422953 184423001 chr3,184422875,184423001,+,L2c,LINE,L2,3260,3387,0,184419616,184423001 +2 + chr3 184439435 184439636 chr3,184439435,184439636,+,L2c,LINE,L2,3174,3387,0,184436262,184439636 +6 + chr3 184439636 184439648 chr3,184439636,184439755,-,MIRb,SINE,MIR,-2,266,144,184439634,184439898 -5 - chr3 184546714 184547021 chr3,184546709,184547021,-,AluY,SINE,Alu,-1,310,2,184546708,184547022 +5 - chr3 184547107 184547161 chr3,184547107,184547161,+,MIR,SINE,MIR,41,94,-168,184547067,184547329 -6 + chr3 184737552 184737673 chr3,184737482,184737673,-,MIR3,SINE,MIR,-6,202,2,184737476,184737674 -2 - chr3 184738735 184738841 chr3,184738735,184738841,-,MIRb,SINE,MIR,-74,194,87,184738661,184738927 -6 - chr3 184742271 184742407 chr3,184742271,184742407,+,MIR1_Amn,SINE,MIR,9,156,-112,184742263,184742519 +6 + chr3 184742951 184742980 chr3,184742951,184742980,+,(AGGG)n,Simple_repeat,Simple_repeat,1,30,0,184742951,184742980 +6 + chr3 184743080 184743120 chr3,184743080,184743120,+,(T)n,Simple_repeat,Simple_repeat,1,40,0,184743080,184743120 +6 + chr3 184743261 184743284 chr3,184743261,184743494,-,MIR,SINE,MIR,-2,260,16,184743259,184743509 -5 - chr3 184756389 184756474 chr3,184756378,184756474,+,UCON47,Unknown,Unknown,57,153,-12,184756322,184756486 -5 + chr3 184756737 184756806 chr3,184756737,184756806,+,GA-rich,Low_complexity,Low_complexity,1,72,0,184756737,184756806 -6 + chr3 184757597 184757636 chr3,184757597,184757636,+,A-rich,Low_complexity,Low_complexity,1,43,0,184757597,184757636 -6 + chr3 184757820 184758124 chr3,184757820,184758124,-,AluSx,SINE,Alu,-11,301,1,184757809,184758124 +6 - chr3 184758136 184758230 chr3,184758136,184758230,-,MIR3,SINE,MIR,-3,205,109,184758133,184758338 +6 - chr3 184773114 184773155 chr3,184773114,184773368,-,Charlie19a,DNA,hAT-Charlie,-2,384,154,184773112,184773521 +1 - chr3 185177316 185177421 chr3,185177301,185177421,-,AluSc,SINE,Alu,-19,290,159,185177282,185177579 -2 - chr3 185179940 185180009 chr3,185179431,185180099,-,L2a,LINE,L2,-1408,2011,1323,185178023,185181421 -3 - chr3 185180544 185180716 chr3,185180544,185180823,-,L2a,LINE,L2,-2966,453,184,185177578,185181006 -5 - chr3 185181136 185181201 chr3,185180852,185181201,+,LTR16,LTR,ERVL,60,429,-9,185180793,185181210 +2 + chr3 185181215 185181686 chr3,185181215,185181899,+,HERV16-int,LTR,ERVL,6,723,-4273,185181210,185186172 +4 + chr3 185182832 185182940 chr3,185182259,185183401,+,ERV3-16A3_I-int,LTR,ERVL,3604,4793,-433,185178656,185183834 +3 + chr3 185712528 185712583 chr3,185712477,185712583,+,MIR3,SINE,MIR,6,124,-84,185712472,185712667 +1 + chr3 185718087 185718167 chr3,185718087,185718304,+,MER58A,DNA,hAT-Charlie,1,224,0,185718087,185718304 +5 + chr3 185722119 185722233 chr3,185722037,185722233,-,AluJr4,SINE,Alu,-109,203,1,185721928,185722233 -2 - chr3 185722233 185722292 chr3,185722233,185722292,-,MIR1_Amn,SINE,MIR,-105,163,105,185722128,185722396 -6 - chr3 185724456 185724604 chr3,185724456,185724680,+,MIRb,SINE,MIR,1,268,0,185724456,185724680 +4 + chr3 185724867 185725074 chr3,185724744,185725263,+,MLT1G3,LTR,ERVL-MaLR,3,587,-8,185724742,185725271 +3 + chr3 185728687 185728807 chr3,185728652,185728807,-,MIR,SINE,MIR,-96,166,7,185728556,185728813 -2 - chr3 185728810 185728870 chr3,185728810,185729634,+,Charlie1a,DNA,hAT-Charlie,6,861,-594,185728805,185730228 +4 + chr3 185729673 185729787 chr3,185729632,185729985,+,Charlie1a,DNA,hAT-Charlie,890,1246,-209,185728743,185730194 +5 + chr3 186079289 186079341 chr3,186079289,186079385,+,Mam_R4,LINE,Dong-R4,3688,3782,-27,186075602,186079412 +4 + chr3 186440345 186440358 chr3,186439154,186440358,-,Tigger3b,DNA,TcMar-Tigger,0,1231,1,186439154,186440358 -1 - chr3 186440358 186440448 chr3,186440358,186440534,+,MER3,DNA,hAT-Charlie,14,199,-10,186440345,186440544 +1 + chr3 186440982 186441027 chr3,186440610,186441027,+,Zaphod,DNA,hAT-Tip100,3595,4031,0,186437016,186441027 +1 + chr3 186441845 186441954 chr3,186441721,186441954,-,AluJo,SINE,Alu,-76,236,1,186441645,186441954 -2 - chr3 186444906 186444959 chr3,186444858,186444959,+,Charlie1a,DNA,hAT-Charlie,1286,1416,-39,186443573,186444998 +2 + chr3 186450408 186450696 chr3,186449969,186450828,+,MER92-int,LTR,ERV1,2654,3515,-1703,186447316,186452531 +5 + chr3 186455436 186455522 chr3,186455436,186455522,-,MIR3,SINE,MIR,-59,149,60,186455377,186455581 +4 - chr3 186455692 186455773 chr3,186455692,186455836,+,MIR,SINE,MIR,68,204,-64,186455625,186455900 -2 + chr3 186457349 186457630 chr3,186457349,186457635,-,L3,LINE,CR1,-73,4026,3728,186457276,186461362 +5 - chr3 186458202 186458482 chr3,186458202,186458700,-,MER21C,LTR,ERVL,-367,571,1,186457835,186458700 +1 - chr3 186478087 186478312 chr3,186478087,186478312,+,MER31-int,LTR,ERV1,5,187,-4749,186478083,186483061 +6 + chr3 186478163 186478312 chr3,186478087,186478312,+,MER31-int,LTR,ERV1,5,187,-4749,186478083,186483061 -4 + chr3 186641954 186642128 chr3,186641895,186642340,-,MLT1J1,LTR,ERVL-MaLR,0,444,3,186641895,186642342 +3 - chr3 186665463 186665553 chr3,186665369,186665553,-,MIRb,SINE,MIR,-63,205,3,186665306,186665555 +4 - chr3 186721220 186721357 chr3,186721220,186721357,+,MIRc,SINE,MIR,22,198,-70,186721199,186721427 -4 + chr3 186734770 186734834 chr3,186734670,186734853,+,AluSx,SINE,Alu,116,298,-14,186734555,186734867 -5 + chr3 186736584 186736650 chr3,186736584,186736758,-,L1M5,LINE,L1,-412,5712,5526,186736172,186742283 +2 - chr3 186745615 186745674 chr3,186745594,186745674,+,L4_C_Mam,LINE,RTE-X,4365,4435,-703,186741230,186746377 -4 + chr3 186745731 186745849 chr3,186745731,186746049,+,AluSz6,SINE,Alu,2,310,-2,186745730,186746051 -1 + chr3 186746699 186746820 chr3,186746542,186746842,+,AluSp,SINE,Alu,1,302,-11,186746542,186746853 -3 + chr3 186753499 186753755 chr3,186753499,186753807,-,AluSx,SINE,Alu,-4,308,1,186753495,186753807 +1 - chr3 186757261 186757311 chr3,186756933,186757311,-,HAL1,LINE,L1,-2015,492,107,186754918,186757417 +5 - chr3 186757311 186757422 chr3,186757311,186757577,-,AluJb,SINE,Alu,-14,298,3,186757297,186757579 +2 - chr3 186757609 186757668 chr3,186757577,186757676,-,HAL1,LINE,L1,-2401,106,1,186755176,186757676 +1 - chr3 186758755 186758823 chr3,186758518,186758823,-,AluSp,SINE,Alu,-11,302,1,186758507,186758823 +4 - chr3 186759116 186759268 chr3,186759116,186759371,+,AluJb,SINE,Alu,64,304,-8,186759053,186759379 -1 + chr3 186760352 186760541 chr3,186760329,186760735,-,MER21A,LTR,ERVL,-467,464,17,186759862,186760751 +1 - chr3 186783213 186783260 chr3,186783213,186783260,+,(CTCCGG)n,Simple_repeat,Simple_repeat,1,52,0,186783213,186783260 -6 + chr3 186807692 186807740 chr3,186807656,186807740,+,L1ME1,LINE,L1,6086,6170,-9,186801571,186807749 +1 + chr3 186807793 186807841 chr3,186807793,186807841,-,MIRb,SINE,MIR,-89,179,134,186807704,186807974 -6 - chr3 186807841 186807886 chr3,186807841,186808142,+,AluSx1,SINE,Alu,1,303,-9,186807841,186808151 +4 + chr3 186810880 186812148 chr3,186810865,186812482,-,SVA_D,Retroposon,SVA,0,1386,1,186810865,186812482 +5 - chr3 186824567 186824661 chr3,186824567,186824661,+,L3b,LINE,CR1,5120,5217,-15,186819448,186824676 -6 + chr3 186851886 186852021 chr3,186851834,186852021,-,MSTA,LTR,ERVL-MaLR,0,428,218,186851834,186852238 +5 - chr3 186852021 186852051 chr3,186852021,186852051,+,(GA)n,Simple_repeat,Simple_repeat,1,30,0,186852021,186852051 -6 + chr3 186852051 186852223 chr3,186852051,186852223,-,MSTA,LTR,ERVL-MaLR,-211,217,2,186851840,186852224 +6 - chr3 186852223 186852381 chr3,186852223,186852381,-,L2c,LINE,L2,-178,3209,3057,186852045,186855437 +6 - chr3 186852446 186852477 chr3,186852446,186852477,+,(TC)n,Simple_repeat,Simple_repeat,1,31,0,186852446,186852477 -6 + chr3 186852476 186852504 chr3,186852476,186852504,+,(TG)n,Simple_repeat,Simple_repeat,1,28,0,186852476,186852504 -6 + chr3 186853778 186853872 chr3,186853753,186853898,-,L2c,LINE,L2,-190,3197,3041,186853563,186856938 +3 - chr3 186854810 186854851 chr3,186854810,186854851,+,(ATTC)n,Simple_repeat,Simple_repeat,1,42,0,186854810,186854851 -6 + chr3 186854936 186855143 chr3,186854936,186855143,-,MIRc,SINE,MIR,-37,231,21,186854899,186855163 +6 - chr3 186855459 186855753 chr3,186855459,186855753,-,AluSz6,SINE,Alu,-17,295,1,186855442,186855753 +6 - chr3 187197539 187197567 chr3,187197539,187197567,+,(CTGCC)n,Simple_repeat,Simple_repeat,1,28,0,187197539,187197567 -6 + chr3 187197908 187198030 chr3,187197908,187198059,+,MIR3,SINE,MIR,1,161,-101,187197908,187198160 -2 + chr3 187198608 187198667 chr3,187198608,187198667,-,L2b,LINE,L2,0,3375,3319,187198608,187201985 +6 - chr3 187203520 187203841 chr3,187203519,187203841,-,LTR16E2,LTR,ERVL,-3,565,230,187203516,187204070 +4 - chr3 187207286 187207629 chr3,187206592,187208148,-,MSTC-int,LTR,ERVL-MaLR,-7,1728,2,187206585,187208149 +1 - chr3 187383499 187383590 chr3,187383499,187383590,-,MIR3,SINE,MIR,-18,190,95,187383481,187383684 -6 - chr3 187383591 187383844 chr3,187383591,187383844,-,LTR37B,LTR,ERV1,-1,467,198,187383590,187384041 -6 - chr3 187384303 187384849 chr3,187384303,187385001,+,MER50B,LTR,ERV1,1,697,0,187384303,187385001 +5 + chr3 187448845 187448890 chr3,187448788,187448972,-,MLT2D,LTR,ERVL,-169,245,63,187448619,187449034 -1 - chr3 187449251 187449359 chr3,187449219,187449359,-,MIR3,SINE,MIR,-44,164,31,187449175,187449389 -2 - chr3 187745322 187745401 chr3,187745322,187745401,+,(AGC)n,Simple_repeat,Simple_repeat,1,79,0,187745322,187745401 +6 + chr3 187796208 187796275 chr3,187796208,187796275,+,MIR,SINE,MIR,194,261,-1,187796015,187796276 +1 + chr3 187932818 187932832 chr3,187932818,187932928,-,MIR3,SINE,MIR,-13,195,90,187932805,187933017 +2 - chr3 187946193 187946219 chr3,187946193,187946219,+,(AC)n,Simple_repeat,Simple_repeat,1,26,0,187946193,187946219 -6 + chr3 187965768 187965999 chr3,187965765,187965999,+,L2c,LINE,L2,3133,3356,-31,187962633,187966030 -5 + chr3 187966008 187966159 chr3,187966008,187966159,-,MIRc,SINE,MIR,0,268,113,187966008,187966271 +6 - chr3 187967025 187967176 chr3,187967025,187967176,+,MIR3,SINE,MIR,36,190,-18,187966990,187967194 -6 + chr3 188001787 188001925 chr3,188001787,188001925,+,MIR,SINE,MIR,51,231,-37,188001737,188001962 -6 + chr3 188003354 188003406 chr3,188003354,188003555,+,MER63A,DNA,hAT-Blackjack,2,204,-6,188003353,188003561 -1 + chr3 188146746 188146822 chr3,188146746,188146822,+,L2b,LINE,L2,3272,3354,-21,188143475,188146843 +6 + chr3 188151784 188151827 chr3,188151784,188151827,+,(AT)n,Simple_repeat,Simple_repeat,1,43,0,188151784,188151827 -6 + chr3 188151827 188151898 chr3,188151827,188151898,+,(TATATATATG)n,Simple_repeat,Simple_repeat,1,71,0,188151827,188151898 -6 + chr3 188151898 188151919 chr3,188151898,188151919,+,(AT)n,Simple_repeat,Simple_repeat,2,22,0,188151897,188151919 -6 + chr3 188151919 188152212 chr3,188151919,188152212,-,AluSx1,SINE,Alu,-18,294,1,188151901,188152212 +6 - chr3 188152212 188152244 chr3,188152212,188152244,+,(AT)n,Simple_repeat,Simple_repeat,1,33,0,188152212,188152244 -6 + chr3 188153223 188153377 chr3,188153223,188153377,+,MIR3,SINE,MIR,34,208,0,188153190,188153377 -6 + chr3 188153851 188153889 chr3,188153851,188153889,+,G-rich,Low_complexity,Low_complexity,1,38,0,188153851,188153889 -6 + chr3 188154038 188154057 chr3,188154038,188154114,+,(GGCGCGG)n,Simple_repeat,Simple_repeat,1,78,0,188154038,188154114 -1 + chr3 188178543 188178674 chr3,188178474,188178674,-,L3,LINE,CR1,-2197,1902,1695,188176277,188180368 -1 - chr3 188178959 188179116 chr3,188178959,188179116,+,(GA)n,Simple_repeat,Simple_repeat,1,157,0,188178959,188179116 +6 + chr3 188179539 188179641 chr3,188179539,188179641,-,L3,LINE,CR1,-2989,1110,1004,188176550,188180644 -6 - chr3 188180603 188180812 chr3,188180603,188181000,-,L1ME4a,LINE,L1,-73,6051,5603,188180530,188186602 -5 - chr3 188562270 188562418 chr3,188562270,188562418,+,L2b,LINE,L2,3221,3371,-4,188559050,188562422 -6 + chr3 188568413 188568515 chr3,188568413,188568515,-,L2a,LINE,L2,0,3426,3280,188568413,188571794 +6 - chr3 188568579 188568646 chr3,188568579,188568646,-,L2a,LINE,L2,-179,3208,3144,188568400,188571789 +6 - chr3 188941715 188941796 chr3,188941488,188941796,-,AluSx1,SINE,Alu,-3,309,4,188941485,188941799 +5 - chr3 188942003 188942050 chr3,188942003,188942152,-,L1MD,LINE,L1,-3403,2743,2582,188938600,188944733 +2 - chr3 188947279 188947358 chr3,188947258,188947358,+,MIR1_Amn,SINE,MIR,45,146,-84,188947214,188947442 -4 + chr3 189240295 189240386 chr3,189240295,189240401,-,L1ME4b,LINE,L1,-74,1316,1207,189240221,189241607 +2 - chr3 189240497 189240594 chr3,189240413,189240769,-,THE1B,LTR,ERVL-MaLR,0,364,1,189240413,189240769 +1 - chr3 190143317 190143501 chr3,190143317,190143611,+,AluSg,SINE,Alu,1,294,-16,190143317,190143627 +4 + chr3 190144606 190144846 chr3,190144599,190145007,+,LTR7,LTR,ERV1,1,448,-2,190144599,190145009 +5 + chr3 190659628 190659750 chr3,190659628,190659789,+,MIRb,SINE,MIR,30,208,-60,190659599,190659849 +5 + chr3 190698742 190698848 chr3,190698742,190699017,-,L2,LINE,L2,-541,2878,2596,190698201,190701612 +1 - chr3 191217070 191217179 chr3,191216987,191217360,-,THE1D,LTR,ERVL-MaLR,0,381,1,191216987,191217360 +3 - chr3 191228715 191228782 chr3,191228608,191228798,+,L1MC5,LINE,L1,8337,8569,-803,191220272,191229601 -3 + chr3 191229782 191229897 chr3,191229782,191230066,+,AluSx1,SINE,Alu,1,282,-30,191229782,191230096 -2 + chr3 191234572 191234605 chr3,191234414,191234714,+,AluSx,SINE,Alu,1,300,-12,191234414,191234726 -1 + chr3 191557324 191557384 chr3,191557114,191557512,-,MLT2F,LTR,ERVL,-163,500,107,191556951,191557618 -1 - chr3 191569649 191569824 chr3,191569649,191569834,+,L1M5,LINE,L1,5324,5511,-653,191564326,191570487 +4 + chr3 191573314 191573509 chr3,191573148,191573551,+,MLT1B,LTR,ERVL-MaLR,1,390,0,191573148,191573551 +5 + chr3 191589903 191590108 chr3,191589722,191590108,+,MLT1J2,LTR,ERVL-MaLR,22,442,-6,191589701,191590114 +2 + chr3 191590151 191590356 chr3,191590151,191590593,-,MLT1J1,LTR,ERVL-MaLR,-18,426,1,191590133,191590593 -5 - chr3 192029977 192030006 chr3,192029977,192030006,+,(TG)n,Simple_repeat,Simple_repeat,1,29,0,192029977,192030006 +6 + chr3 192032329 192032411 chr3,192032329,192032539,-,ERV3-16A3_I-int,LTR,ERVL,-2282,2944,2733,192030047,192035271 -4 - chr3 192036018 192036130 chr3,192036005,192036130,-,AluJr,SINE,Alu,-185,127,1,192035820,192036130 -2 - chr3 192036378 192036429 chr3,192036378,192036429,-,L1PA4,LINE,L1,-262,5892,5842,192036116,192042270 -5 - chr3 192036429 192036555 chr3,192036429,192036555,+,L1PA4,LINE,L1,6029,6154,-1,192030401,192036556 +6 + chr3 192238037 192238321 chr3,192235621,192238438,-,L1PA15,LINE,L1,-2765,4001,1147,192232856,192239584 -1 - chr3 192238615 192238684 chr3,192238615,192238726,-,MIRc,SINE,MIR,-121,147,19,192238494,192238744 -1 - chr3 192282797 192282841 chr3,192282779,192282841,-,L1MC2,LINE,L1,-20,6324,6257,192282759,192289097 -2 - chr3 192515442 192515508 chr3,192515442,192515542,+,MIR3,SINE,MIR,17,134,-74,192515426,192515616 +4 + chr3 192516481 192516499 chr3,192516246,192516499,-,L3,LINE,CR1,-98,4001,3715,192516148,192520213 -2 - chr3 193554633 193554687 chr3,193554633,193554687,+,(TG)n,Simple_repeat,Simple_repeat,1,54,0,193554633,193554687 +6 + chr3 193843111 193843225 chr3,193843111,193843236,+,MIR3,SINE,MIR,22,144,-64,193843090,193843300 -2 + chr3 193958413 193958499 chr3,193958413,193958499,+,MIRb,SINE,MIR,20,125,-143,193958394,193958642 -6 + chr3 193958583 193958678 chr3,193958583,193958740,+,MIRc,SINE,MIR,93,263,-5,193958491,193958745 -2 + chr3 194002015 194002176 chr3,194002015,194002176,+,L2b,LINE,L2,3051,3217,-158,193998965,194002334 -6 + chr3 194002191 194002407 chr3,194002191,194002407,+,MIR,SINE,MIR,12,225,-37,194002180,194002444 -6 + chr3 194005862 194005923 chr3,194005759,194005923,-,Charlie4z,DNA,hAT-Charlie,-1,166,1,194005758,194005923 -2 - chr3 194009648 194010015 chr3,194009648,194010015,-,ORSL-2b,DNA,hAT-Tip100,-10,498,107,194009638,194010121 +6 - chr3 194043235 194043409 chr3,194043235,194043409,-,MIRc,SINE,MIR,-62,206,14,194043173,194043422 +6 - chr3 194046470 194046679 chr3,194046312,194046855,-,MLT1H1,LTR,ERVL-MaLR,0,555,29,194046312,194046883 +3 - chr3 194049303 194049371 chr3,194049303,194049395,-,MIR3,SINE,MIR,-15,193,100,194049288,194049494 +1 - chr3 194053765 194053895 chr3,194053608,194053895,+,AluSg,SINE,Alu,1,300,-10,194053608,194053905 -4 + chr3 194053895 194053987 chr3,194053895,194053987,-,L2a,LINE,L2,-718,2701,2579,194053177,194056565 +6 - chr3 194054072 194054205 chr3,194054072,194054205,+,L1ME3Cz,LINE,L1,772,898,-99,194053301,194054304 -6 + chr3 194054204 194054369 chr3,194054204,194054369,+,L1ME3Cz,LINE,L1,802,963,-34,194053403,194054403 -6 + chr3 194054539 194054793 chr3,194054539,194054793,-,L2b,LINE,L2,-94,3281,3014,194054445,194057806 +6 - chr3 194055320 194055493 chr3,194055320,194055493,-,MIRc,SINE,MIR,-4,264,94,194055316,194055586 +5 - chr3 194057701 194057938 chr3,194057701,194057938,+,MIR,SINE,MIR,16,262,0,194057686,194057938 -6 + chr3 194058250 194058288 chr3,194058250,194058288,+,(CCAGCC)n,Simple_repeat,Simple_repeat,1,38,0,194058250,194058288 -6 + chr3 194061266 194061478 chr3,194061133,194061478,+,Tigger3a,DNA,TcMar-Tigger,3,346,-2,194061131,194061480 -4 + chr3 194065216 194065389 chr3,194065216,194065389,+,MIRb,SINE,MIR,4,177,-91,194065213,194065480 -6 + chr3 194069316 194069428 chr3,194069156,194069428,+,L2,LINE,L2,2804,3078,-341,194066353,194069769 -4 + chr3 194069490 194069529 chr3,194069490,194069828,+,MLT1A,LTR,ERVL-MaLR,1,346,-28,194069490,194069856 -1 + chr3 194078220 194078294 chr3,194078220,194078348,-,MIR3,SINE,MIR,-43,165,24,194078177,194078371 -4 - chr3 194080206 194080358 chr3,194080206,194080358,+,MIR3,SINE,MIR,45,197,-11,194080162,194080369 +6 + chr3 194108855 194108902 chr3,194108845,194108902,-,L4_C_Mam,LINE,RTE-X,-758,4380,4323,194108087,194113224 -2 - chr3 194247648 194247735 chr3,194247526,194247735,-,MIR,SINE,MIR,-30,232,3,194247496,194247737 -1 - chr3 194257592 194257772 chr3,194257592,194257882,+,AluSg,SINE,Alu,2,291,-19,194257591,194257901 +5 + chr3 194299635 194299914 chr3,194299604,194299914,-,AluY,SINE,Alu,0,311,1,194299604,194299914 +5 - chr3 194301537 194301759 chr3,194301537,194301759,-,L2c,LINE,L2,-9,3378,3130,194301528,194304888 +6 - chr3 194302139 194302182 chr3,194302139,194302182,+,L2a,LINE,L2,3039,3082,-344,194299101,194302526 -6 + chr3 194302268 194302477 chr3,194302268,194302477,-,L2a,LINE,L2,-1,3425,3156,194302267,194305632 +6 - chr3 194302478 194302604 chr3,194302478,194302604,-,Zaphod3,DNA,hAT-Tip100,-2457,166,41,194300021,194302644 +6 - chr3 194302657 194302774 chr3,194302657,194302774,-,L2a,LINE,L2,-205,3221,3111,194302452,194305884 +6 - chr3 194302774 194303067 chr3,194302774,194303067,+,AluY,SINE,Alu,1,291,-20,194302774,194303087 -6 + chr3 194303067 194303465 chr3,194303067,194303838,-,L2a,LINE,L2,-316,3110,2082,194302751,194305919 +2 - chr3 194303596 194303737 chr3,194303067,194303838,-,L2a,LINE,L2,-316,3110,2082,194302751,194305919 +3 - chr3 194312601 194312713 chr3,194312546,194312713,+,MIR,SINE,MIR,20,200,-68,194312527,194312781 -1 + chr3 194487454 194487466 chr3,194487297,194487466,-,MIR3,SINE,MIR,-47,161,3,194487250,194487468 -1 - chr3 194488306 194488726 chr3,194488306,194489162,+,L2,LINE,L2,1719,2658,-761,194486588,194489923 +4 + chr3 194496414 194496614 chr3,194496414,194496614,-,MIR,SINE,MIR,-21,241,21,194496393,194496634 +6 - chr3 194496614 194496807 chr3,194496614,194496807,+,MER58A,DNA,hAT-Charlie,16,221,-3,194496599,194496810 -6 + chr3 194497051 194497349 chr3,194497051,194497349,+,AluSx1,SINE,Alu,1,300,-12,194497051,194497361 -6 + chr3 194497364 194497420 chr3,194497364,194497420,-,L3,LINE,CR1,-1,4098,4042,194497363,194501461 +6 - chr3 194497532 194497752 chr3,194497532,194497752,+,AluSx1,SINE,Alu,85,307,-5,194497448,194497757 -6 + chr3 194498270 194498471 chr3,194498270,194498471,+,AluJb,SINE,Alu,97,300,-12,194498174,194498483 -6 + chr3 194498491 194498520 chr3,194498491,194498520,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,29,0,194498491,194498520 -6 + chr3 194498685 194498751 chr3,194498685,194498751,+,MamRTE1,LINE,RTE-BovB,3616,3679,-133,194495070,194498884 -6 + chr3 194498764 194499043 chr3,194498764,194499062,+,AluSp,SINE,Alu,1,299,-14,194498764,194499076 -2 + chr3 194501262 194501275 chr3,194501100,194501275,+,L1M4,LINE,L1,3117,3299,-2847,194497984,194504122 -4 + chr3 194501276 194501503 chr3,194501276,194501577,+,AluY,SINE,Alu,1,299,-12,194501276,194501589 -1 + chr3 194510493 194510647 chr3,194510493,194510659,+,FAM,SINE,Alu,5,170,-15,194510489,194510674 +5 + chr3 194517071 194517306 chr3,194516855,194517306,-,LTR22A,LTR,ERVK,0,458,1,194516855,194517306 -2 - chr3 194518068 194518163 chr3,194518068,194518163,+,L1MC5,LINE,L1,6930,7020,-2284,194511139,194520447 +6 + chr3 194518163 194518279 chr3,194518163,194518293,+,FLAM_C,SINE,Alu,2,131,-12,194518162,194518305 +5 + chr3 194589021 194589142 chr3,194589003,194589298,-,AluJo,SINE,Alu,-16,296,2,194588987,194589299 -3 - chr3 194589855 194589930 chr3,194589801,194589930,+,MIR3,SINE,MIR,50,198,-10,194589752,194589940 +2 + chr3 194705679 194705720 chr3,194705679,194705720,+,(CTCCACT)n,Simple_repeat,Simple_repeat,1,42,0,194705679,194705720 +6 + chr3 194706838 194706949 chr3,194706763,194706949,+,MER63A,DNA,hAT-Blackjack,1,205,-5,194706763,194706954 +2 + chr3 194708421 194708522 chr3,194708003,194708522,-,MLT1F,LTR,ERVL-MaLR,-44,504,1,194707959,194708522 -1 - chr3 194708543 194708688 chr3,194708543,194708688,+,MIRc,SINE,MIR,36,198,-70,194708508,194708758 +6 + chr3 194708842 194709074 chr3,194708842,194709074,+,MIR,SINE,MIR,7,246,-16,194708836,194709090 +1 + chr3 194710015 194710130 chr3,194709803,194710130,-,AluSx1,SINE,Alu,0,312,3,194709803,194710132 -2 - chr3 194744574 194744587 chr3,194744394,194744587,+,MIRc,SINE,MIR,10,193,-75,194744385,194744662 +2 + chr3 194745535 194745631 chr3,194745440,194746039,+,MLT1G3,LTR,ERVL-MaLR,1,593,-2,194745440,194746041 +3 + chr3 194765238 194765548 chr3,194765232,194765548,-,AluY,SINE,Alu,0,311,1,194765232,194765548 +5 - chr3 194768636 194768712 chr3,194768611,194768719,-,L2b,LINE,L2,0,3375,3266,194768611,194771984 +1 - chr3 194772252 194772271 chr3,194772252,194772315,-,L2c,LINE,L2,-244,3143,3080,194772008,194775394 -4 - chr3 194779848 194780026 chr3,194779848,194780026,+,L2a,LINE,L2,3182,3386,-1,194776667,194780027 +6 + chr3 194781308 194781877 chr3,194781308,194781877,-,MLT1F2,LTR,ERVL-MaLR,-7,553,2,194781301,194781878 -5 - chr3 194781996 194782054 chr3,194781996,194782054,-,L2c,LINE,L2,0,3387,3331,194781996,194785384 -6 - chr3 194782054 194782168 chr3,194782054,194782180,+,MIR,SINE,MIR,3,172,-90,194782052,194782270 +5 + chr3 194828484 194828620 chr3,194828484,194829178,-,L2a,LINE,L2,-8,3418,2669,194828476,194831846 -4 - chr3 195152761 195152790 chr3,195152761,195152867,-,UCON29,DNA,PiggyBac?,-20,419,319,195152741,195153185 -5 - chr3 195640003 195640074 chr3,195640003,195640074,-,FLAM_A,SINE,Alu,-24,118,48,195639979,195640121 -6 - chr3 195655565 195656384 chr3,195655392,195656384,+,L1ME1,LINE,L1,4978,5998,-181,195650415,195656565 -5 + chr3 195657480 195657620 chr3,195657480,195657620,+,AluJr4,SINE,Alu,1,141,-171,195657480,195657791 -6 + chr3 195657812 195657847 chr3,195657812,195657847,-,MER5B,DNA,hAT-Charlie,-29,149,115,195657783,195657961 +6 - chr3 195666473 195666509 chr3,195666473,195666509,-,MIRc,SINE,MIR,-118,150,113,195666355,195666621 -6 - chr3 195666656 195666682 chr3,195666656,195667876,+,L1MA9,LINE,L1,5146,6312,0,195661511,195667876 +5 + chr3 195677908 195678067 chr3,195677908,195678375,-,L1PB4,LINE,L1,-3,6153,5668,195677905,195684042 -5 - chr3 195684808 195685090 chr3,195684808,195685090,-,AluJb,SINE,Alu,-5,307,1,195684803,195685090 -6 - chr3 195685092 195685242 chr3,195685092,195685242,-,L1ME4a,LINE,L1,-6,6118,5950,195685086,195691191 -6 - chr3 195685242 195685455 chr3,195685242,195685455,-,Tigger4a,DNA,TcMar-Tigger,-4,232,2,195685238,195685456 -6 - chr3 195685455 195685706 chr3,195685455,195685706,-,L1ME4a,LINE,L1,-175,5949,5695,195685280,195691400 -6 - chr3 195686266 195686389 chr3,195686266,195686546,-,AluJo,SINE,Alu,-6,306,1,195686260,195686546 -1 - chr3 195686417 195686546 chr3,195686266,195686546,-,AluJo,SINE,Alu,-6,306,1,195686260,195686546 -1 - chr3 195686644 195686718 chr3,195686644,195686804,+,MER1B,DNA,hAT-Charlie,1,169,-360,195686644,195687164 +5 + chr3 195687821 195687906 chr3,195687668,195687906,+,MER1B,DNA,hAT-Charlie,96,339,0,195687573,195687906 +1 + chr3 195688028 195688108 chr3,195688028,195688108,+,MADE1,DNA,TcMar-Mariner,1,80,0,195688028,195688108 +6 + chr3 195688173 195688319 chr3,195688173,195688457,-,AluJb,SINE,Alu,-9,303,9,195688164,195688465 -1 - chr3 195688367 195688457 chr3,195688173,195688457,-,AluJb,SINE,Alu,-9,303,9,195688164,195688465 -1 - chr3 195688592 195688793 chr3,195688592,195688793,+,L1ME2,LINE,L1,5805,6032,-147,195682788,195688940 +1 + chr3 195689376 195689438 chr3,195689376,195689522,+,L1MC5a,LINE,L1,799,954,-1823,195688578,195691345 +4 + chr3 195696361 195696377 chr3,195695882,195696377,-,L1PA7,LINE,L1,-457,5697,5190,195695425,195701566 -2 - chr3 195696374 195696589 chr3,195696374,195696623,+,L1PA7,LINE,L1,4926,5175,-971,195691449,195697594 +5 + chr3 195698663 195698924 chr3,195697493,195698924,+,L2,LINE,L2,1394,3041,-378,195696100,195699302 +1 + chr3 195698948 195699070 chr3,195698948,195699070,-,MamRep1527,LTR,LTR,-73,896,782,195698875,195699851 -1 - chr3 195700321 195700464 chr3,195700260,195700464,+,L1MD,LINE,L1,5254,5467,-775,195695007,195701239 +1 + chr3 195700464 195700769 chr3,195700464,195700769,+,AluSz6,SINE,Alu,1,305,-7,195700464,195700776 +6 + chr3 195700769 195701003 chr3,195700769,195701003,+,L1MD,LINE,L1,5468,5703,-539,195695302,195701542 +6 + chr3 195701013 195701320 chr3,195701013,195701320,+,AluSx1,SINE,Alu,1,308,-4,195701013,195701324 +1 + chr3 195702183 195702442 chr3,195702160,195702464,-,AluSx,SINE,Alu,-11,301,1,195702149,195702464 -3 - chr3 195708306 195708411 chr3,195708306,195708411,+,L3b,LINE,CR1,4039,4089,-10,195704268,195708421 +5 + chr3 195709004 195709172 chr3,195709004,195709172,-,MER58B,DNA,hAT-Charlie,-165,176,1,195708839,195709172 -6 - chr3 195709209 195709444 chr3,195709209,195709444,-,LTR73,LTR,ERV1,0,572,337,195709209,195709780 -5 - chr3 195709444 195709576 chr3,195709444,195709576,+,AluJr,SINE,Alu,1,133,-179,195709444,195709755 +6 + chr3 195709576 195709587 chr3,195709576,195709919,-,LTR73,LTR,ERV1,-236,336,2,195709340,195709920 -5 - chr3 195711795 195711875 chr3,195711795,195711958,+,MamRep564,Unknown,Unknown,76,233,-124,195711720,195712082 +5 + chr3 195716424 195716518 chr3,195716424,195716518,+,AluSx,SINE,Alu,203,295,-17,195716222,195716535 +6 + chr3 195716527 195716672 chr3,195716527,195716842,+,AluSx,SINE,Alu,1,303,-9,195716527,195716851 +5 + chr3 195717512 195717778 chr3,195717356,195717808,+,MER4A1,LTR,ERV1,1,472,0,195717356,195717808 +5 + chr3 195717914 195718009 chr3,195717811,195718319,+,MER4-int,LTR,ERV1,1,475,-7795,195717811,195726114 +5 + chr3 195718027 195718196 chr3,195717811,195718319,+,MER4-int,LTR,ERV1,1,475,-7795,195717811,195726114 +5 + chr3 195718603 195718895 chr3,195718522,195718895,+,MER4-int,LTR,ERV1,1845,2165,-4166,195716678,195723061 +2 + chr3 195718905 195719010 chr3,195718905,195719123,+,MER4-int,LTR,ERV1,198,417,-6341,195718708,195725464 +5 + chr3 195729343 195729551 chr3,195729312,195729615,-,AluSp,SINE,Alu,-7,306,1,195729305,195729615 -5 - chr3 195910029 195910126 chr3,195910029,195910126,+,MIR3,SINE,MIR,82,181,-27,195909948,195910153 +6 + chr3 195910947 195911132 chr3,195910947,195911132,-,MIRb,SINE,MIR,-44,224,35,195910903,195911166 -6 - chr3 195911141 195911257 chr3,195911141,195911438,+,AluJb,SINE,Alu,1,296,-16,195911141,195911454 +5 + chr3 195913149 195913204 chr3,195913082,195913204,-,L1ME3A,LINE,L1,-3,6170,6023,195913079,195919226 -2 - chr3 195913082 195913204 chr3,195913082,195913204,-,L1ME3A,LINE,L1,-3,6170,6023,195913079,195919226 +6 - chr3 195913265 195913408 chr3,195913265,195913408,+,L2a,LINE,L2,3259,3423,-3,195910007,195913411 -6 + chr3 195913602 195913743 chr3,195913602,195913743,-,MER5A1,DNA,hAT-Charlie,0,166,1,195913602,195913743 -1 - chr3 195913602 195913683 chr3,195913602,195913743,-,MER5A1,DNA,hAT-Charlie,0,166,1,195913602,195913743 +1 - chr3 195913769 195913815 chr3,195913769,195913815,+,MER5B,DNA,hAT-Charlie,19,58,-120,195913751,195913935 +6 + chr3 195913815 195913986 chr3,195913815,195914111,+,AluSg,SINE,Alu,1,296,-14,195913815,195914125 +5 + chr3 195949573 195949644 chr3,195949573,195949644,+,FLAM_A,SINE,Alu,48,118,-24,195949526,195949668 -6 + chr3 195949886 195950088 chr3,195949886,195950088,-,AluJb,SINE,Alu,-15,297,85,195949871,195950172 +6 - chr3 195950592 195950685 chr3,195950592,195950685,-,L4_A_Mam,LINE,RTE-X,-190,4800,4698,195950402,195955382 +6 - chr3 195950877 195950980 chr3,195950877,195950980,-,AluJo,SINE,Alu,-195,117,1,195950682,195950980 +6 - chr3 195951094 195951410 chr3,195951094,195951410,-,L4_A_Mam,LINE,RTE-X,-500,4490,4126,195950594,195955535 +6 - chr3 195951567 195951669 chr3,195951567,195951669,-,MIRb,SINE,MIR,0,268,166,195951567,195951834 +6 - chr3 195952175 195952227 chr3,195952175,195952227,+,A-rich,Low_complexity,Low_complexity,1,53,0,195952175,195952227 -6 + chr3 196160760 196160829 chr3,196160760,196160829,-,MER63D,DNA,hAT-Blackjack,-681,380,311,196160079,196161139 -6 - chr3 196160857 196160890 chr3,196160857,196160962,+,ORSL-2b,DNA,hAT-Tip100,202,312,-196,196160656,196161158 +5 + chr3 196251508 196251654 chr3,196251508,196251734,+,L1ME4b,LINE,L1,275,536,-356,196251234,196252090 +5 + chr3 196323460 196323607 chr3,196323401,196323607,+,MIRc,SINE,MIR,43,265,-3,196323359,196323610 +2 + chr3 196324200 196324237 chr3,196324200,196324237,+,(TC)n,Simple_repeat,Simple_repeat,1,37,0,196324200,196324237 +6 + chr3 196324911 196324994 chr3,196324911,196324994,+,GA-rich,Low_complexity,Low_complexity,1,85,0,196324911,196324994 +6 + chr3 196325158 196325194 chr3,196325158,196325194,+,(CTTC)n,Simple_repeat,Simple_repeat,1,36,0,196325158,196325194 +6 + chr3 196325194 196325499 chr3,196325194,196325499,-,AluSg,SINE,Alu,-4,306,1,196325190,196325499 -6 - chr3 196432403 196432421 chr3,196432403,196432421,+,(CCG)n,Simple_repeat,Simple_repeat,1,18,0,196432403,196432421 +6 + chr3 196474801 196474813 chr3,196474746,196474813,-,LTR87,LTR,ERVL?,-516,108,41,196474230,196474853 -1 - chr3 196474822 196475030 chr3,196474822,196475030,+,MER58A,DNA,hAT-Charlie,1,215,-9,196474822,196475039 +6 + chr3 196631498 196631567 chr3,196631389,196631567,-,L1MB8,LINE,L1,-742,5442,5253,196630647,196636819 +5 - chr3 196913324 196913338 chr3,196913324,196913589,+,AluSg7,SINE,Alu,38,300,-9,196913287,196913598 +4 + chr3 196913860 196913948 chr3,196913647,196913948,-,AluSz6,SINE,Alu,-8,304,1,196913639,196913948 -2 - chr3 196913948 196914022 chr3,196913948,196914022,+,L1ME4b,LINE,L1,107,188,-704,196913842,196914726 +6 + chr3 196914124 196914311 chr3,196914124,196914311,-,MER58A,DNA,hAT-Charlie,0,224,27,196914124,196914337 -6 - chr3 196914464 196914557 chr3,196914464,196914557,+,AluJo,SINE,Alu,117,213,-99,196914348,196914656 +6 + chr3 196914564 196914579 chr3,196914564,196914586,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,196914564,196914586 +5 + chr3 196940082 196940133 chr3,196940082,196940383,+,AluSq,SINE,Alu,1,294,-19,196940082,196940402 +4 + chr3 196940980 196941086 chr3,196940827,196941086,+,AluJr,SINE,Alu,28,293,-19,196940800,196941105 +2 + chr3 196941103 196941142 chr3,196941103,196941389,-,AluSg4,SINE,Alu,-18,292,1,196941085,196941389 -4 - chr3 196999460 196999572 chr3,196999406,196999673,-,MER115,DNA,hAT-Tip100,-225,468,144,196999181,196999816 -1 - chr3 197302655 197303167 chr3,197302655,197303167,+,L3,LINE,CR1,3482,4076,-23,197299174,197303190 +5 + chr3 197303528 197303730 chr3,197303528,197303730,-,MIR3,SINE,MIR,-66,196,2,197303462,197303731 -6 - chr3 197451155 197451287 chr3,197451155,197451287,-,MIRc,SINE,MIR,-119,149,17,197451036,197451303 +6 - chr3 197457749 197457783 chr3,197457749,197457847,+,MIRb,SINE,MIR,106,204,-64,197457644,197457911 -2 + chr3 197458185 197458222 chr3,197458162,197458222,+,MIRb,SINE,MIR,205,264,-4,197457958,197458226 -4 + chr3 197458405 197458415 chr3,197458272,197458415,+,MER91A,DNA,hAT-Tip100,25,183,-13,197458248,197458428 +1 + chr3 197458272 197458323 chr3,197458272,197458415,+,MER91A,DNA,hAT-Tip100,25,183,-13,197458248,197458428 -1 + chr3 197466618 197466697 chr3,197466579,197466697,-,MIR3,SINE,MIR,-33,175,35,197466546,197466731 -2 - chr3 197505770 197505854 chr3,197505770,197505854,-,X9_LINE,LINE,L1,-28,908,825,197505742,197506678 +6 - chr3 197506475 197506509 chr3,197506475,197506509,+,(CCTG)n,Simple_repeat,Simple_repeat,1,34,0,197506475,197506509 -6 + chr3 197506634 197506939 chr3,197506634,197506939,+,AluSx,SINE,Alu,1,295,-17,197506634,197506956 -6 + chr3 197645686 197645769 chr3,197645686,197645769,+,D20S16,Satellite,Satellite,3,85,-13,197645684,197645782 +6 + chr3 197660565 197660684 chr3,197660480,197660684,-,L1M5,LINE,L1,-311,5813,5587,197660169,197666270 +5 - chr3 198152384 198152520 chr3,198152384,198152846,+,LTR102_Mam,LTR,ERVL,339,851,0,198152046,198152846 +4 + chr3 198153259 198153301 chr3,198153259,198153301,+,(GCA)n,Simple_repeat,Simple_repeat,1,42,0,198153259,198153301 +1 + chr3 198157123 198157235 chr3,198156996,198157235,-,AluSc8,SINE,Alu,-81,230,1,198156915,198157235 -2 - chr3 198169785 198169817 chr3,198169710,198169817,-,L1MC4,LINE,L1,-3,8039,7931,198169707,198177747 -2 - chr3 198169828 198169912 chr3,198169828,198169912,-,L1MC4,LINE,L1,-196,7846,7761,198169632,198177672 -5 - chr3 198170009 198170059 chr3,198170009,198170085,-,L1MC4,LINE,L1,-420,7622,7548,198169589,198177632 -5 - chr4 149884 150317 chr4,149884,150356,-,L1MB2,LINE,L1,-27,6144,5646,149857,156001 -5 - chr4 574073 574102 chr4,574073,574102,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,574073,574102 -6 + chr4 652850 652980 chr4,652832,652980,+,L1MA7,LINE,L1,6103,6256,-35,646730,653015 -5 + chr4 661428 661460 chr4,661428,661460,+,(TGCCC)n,Simple_repeat,Simple_repeat,1,33,0,661428,661460 -6 + chr4 757562 757740 chr4,757562,757886,-,L1MEd,LINE,L1,-4862,2241,1903,752700,759788 +1 - chr4 762405 762722 chr4,762405,762722,+,MSTB2,LTR,ERVL-MaLR,2,451,-6,762404,762728 -6 + chr4 780149 780187 chr4,780037,780187,-,L1MC3,LINE,L1,-755,7030,6863,779282,787049 +5 - chr4 780187 780489 chr4,780187,780489,-,AluSp,SINE,Alu,-11,302,1,780176,780489 +5 - chr4 780489 780548 chr4,780489,780548,-,L1MC3,LINE,L1,-923,6862,6785,779566,787332 +6 - chr4 780616 780717 chr4,780616,780719,+,MER34B,LTR,ERV1,302,410,-155,780315,780874 -2 + chr4 836512 836564 chr4,836080,836564,+,L1MB7,LINE,L1,5676,6168,-16,830405,836580 -5 + chr4 1132400 1132440 chr4,1132400,1132502,-,L2b,LINE,L2,-199,3176,3075,1132201,1135576 -4 - chr4 1132847 1132977 chr4,1132847,1133492,-,L1ME3A,LINE,L1,-128,6747,6016,1132719,1139507 -5 - chr4 1151372 1152070 chr4,1150052,1152070,-,MER52A,LTR,ERV1,0,1755,1,1150052,1152070 -1 - chr4 1152399 1152423 chr4,1152399,1152629,-,MIR,SINE,MIR,-21,241,21,1152378,1152649 -4 - chr4 1152589 1152629 chr4,1152399,1152629,-,MIR,SINE,MIR,-21,241,21,1152378,1152649 -2 - chr4 1152938 1152960 chr4,1152938,1152960,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,1152938,1152960 +6 + chr4 1252107 1252409 chr4,1252107,1252409,-,AluSq2,SINE,Alu,-12,301,1,1252095,1252409 -6 - chr4 1252503 1252968 chr4,1252503,1252968,-,L1MA8,LINE,L1,-6,6285,5771,1252497,1258738 -6 - chr4 1253018 1253112 chr4,1253018,1253112,+,MIRb,SINE,MIR,112,203,-65,1252907,1253177 +6 + chr4 1253256 1253622 chr4,1253256,1253622,-,MSTD,LTR,ERVL-MaLR,0,396,1,1253256,1253622 -6 - chr4 1253718 1254159 chr4,1253718,1254159,+,L1MEd,LINE,L1,35,503,-6583,1253684,1260742 +6 + chr4 1254159 1254284 chr4,1254159,1254284,-,FLAM_C,SINE,Alu,-18,125,1,1254141,1254284 -6 - chr4 1254284 1254818 chr4,1254284,1254818,+,L1MEd,LINE,L1,504,1020,-6066,1253781,1260884 +6 + chr4 1254849 1255244 chr4,1254849,1255244,+,L1MEd,LINE,L1,1101,1510,-5576,1253749,1260820 +6 + chr4 1255246 1255599 chr4,1255246,1255599,-,MLT1F2,LTR,ERVL-MaLR,-2,558,160,1255244,1255758 -6 - chr4 1255750 1255910 chr4,1255750,1256182,-,L1MB2,LINE,L1,-7,6164,5742,1255743,1261923 -5 - chr4 1266048 1266163 chr4,1266048,1266334,+,AluJr4,SINE,Alu,2,286,-26,1266047,1266360 +5 + chr4 1287605 1287723 chr4,1287603,1287877,-,AluSc,SINE,Alu,-35,274,1,1287568,1287877 -3 - chr4 1288026 1288291 chr4,1287877,1288323,+,MER4D1,LTR,ERV1,417,861,-39,1287461,1288362 +5 + chr4 1574064 1574164 chr4,1574064,1574164,-,L1MC4a,LINE,L1,-1,7881,7773,1574063,1581936 +6 - chr4 1712910 1712974 chr4,1712910,1712974,+,MLT1F2,LTR,ERVL-MaLR,497,555,-5,1712414,1712979 +6 + chr4 1713592 1713614 chr4,1713592,1713614,+,MER49,LTR,ERV1,1,22,-901,1713592,1714515 +6 + chr4 2295594 2295647 chr4,2295594,2295647,+,(CCTGCTC)n,Simple_repeat,Simple_repeat,1,53,0,2295594,2295647 +6 + chr4 2306896 2306988 chr4,2306896,2306988,-,L1ME3A,LINE,L1,-465,7016,6928,2306431,2313915 -6 - chr4 2307049 2307098 chr4,2307049,2307494,-,L1ME3A,LINE,L1,-644,6826,6342,2306405,2313835 -4 - chr4 2428245 2429197 chr4,2428245,2429197,+,L2a,LINE,L2,1645,3101,-325,2426601,2429522 +6 + chr4 2464033 2464114 chr4,2464033,2464114,+,MamGypLTR1b,LTR,Gypsy,529,611,-171,2463505,2464285 +6 + chr4 2935271 2935512 chr4,2935271,2935512,-,MLT2F,LTR,ERVL,-89,574,304,2935182,2935815 -6 - chr4 2935611 2935686 chr4,2935611,2935686,-,MLT2F,LTR,ERVL,-532,131,54,2935079,2935739 -6 - chr4 2935837 2936474 chr4,2935837,2936474,+,LTR8,LTR,ERV1,1,691,0,2935837,2936474 +6 + chr4 2938693 2938792 chr4,2938515,2938792,-,AluJo,SINE,Alu,-21,291,16,2938494,2938807 -3 - chr4 2940604 2940697 chr4,2940604,2940697,-,L2a,LINE,L2,-49,3377,3233,2940555,2943929 -6 - chr4 2950871 2950914 chr4,2950871,2950914,+,GA-rich,Low_complexity,Low_complexity,1,43,0,2950871,2950914 +6 + chr4 2961354 2961375 chr4,2961346,2961375,-,MIR,SINE,MIR,-121,141,113,2961225,2961487 -2 - chr4 3070155 3070173 chr4,3070155,3070257,-,L1ME4a,LINE,L1,-20,6104,6000,3070135,3076256 +2 - chr4 3503597 3503740 chr4,3503577,3503740,+,L1ME3B,LINE,L1,2874,3036,-3110,3500704,3506850 -5 + chr4 3504331 3504457 chr4,3504331,3504467,+,AluSx1,SINE,Alu,1,127,-185,3504331,3504652 -1 + chr4 3544561 3544648 chr4,3544561,3544648,-,MIRb,SINE,MIR,-94,174,87,3544467,3544734 -6 - chr4 3546170 3546305 chr4,3546170,3546305,+,FLAM_C,SINE,Alu,3,137,-6,3546168,3546311 +2 + chr4 3546334 3546348 chr4,3546334,3547081,-,L1M5,LINE,L1,-1492,4654,3855,3544842,3550935 -4 - chr4 3548461 3548588 chr4,3548253,3548697,+,Arthur1B,DNA,hAT-Tip100,700,1217,-8,3547554,3548705 +5 + chr4 3548675 3548697 chr4,3548253,3548697,+,Arthur1B,DNA,hAT-Tip100,700,1217,-8,3547554,3548705 +5 + chr4 3548749 3548794 chr4,3548749,3548794,+,G-rich,Low_complexity,Low_complexity,1,45,0,3548749,3548794 +6 + chr4 3589059 3589158 chr4,3589059,3589158,+,(AC)n,Simple_repeat,Simple_repeat,1,99,0,3589059,3589158 +6 + chr4 3589190 3589320 chr4,3589190,3589320,-,L1MCa,LINE,L1,-4957,2941,2818,3584233,3592137 -6 - chr4 3589317 3589433 chr4,3589317,3589433,-,L1ME2z,LINE,L1,-2,6442,6329,3589315,3595761 -6 - chr4 3589473 3589786 chr4,3589473,3589786,-,Tigger3c,DNA,TcMar-Tigger,0,602,297,3589473,3590082 -6 - chr4 3589757 3589868 chr4,3589757,3589868,-,Tigger3c,DNA,TcMar-Tigger,-207,114,1,3589550,3589868 -6 - chr4 3589879 3589934 chr4,3589879,3589934,+,(AC)n,Simple_repeat,Simple_repeat,1,55,0,3589879,3589934 +6 + chr4 3589961 3590004 chr4,3589961,3590163,-,L1M5,LINE,L1,-650,5592,5390,3589311,3595552 -5 - chr4 3590628 3590697 chr4,3590628,3590697,-,MLT1K,LTR,ERVL-MaLR,-348,247,174,3590280,3590870 -6 - chr4 3758971 3759068 chr4,3758971,3759068,-,MIR3,SINE,MIR,-86,122,18,3758885,3759085 +6 - chr4 3759318 3759429 chr4,3759318,3759429,-,MIR3,SINE,MIR,-27,181,58,3759291,3759486 +6 - chr4 3759541 3759634 chr4,3759541,3759634,-,MLT1D,LTR,ERVL-MaLR,-12,493,400,3759529,3760033 +6 - chr4 3759738 3759913 chr4,3759738,3759913,-,MLT1D,LTR,ERVL-MaLR,-259,246,54,3759479,3759966 +6 - chr4 3759990 3760026 chr4,3759990,3760232,-,MLT1L,LTR,ERVL-MaLR,-11,599,337,3759979,3760568 +2 - chr4 3760145 3760232 chr4,3759990,3760232,-,MLT1L,LTR,ERVL-MaLR,-11,599,337,3759979,3760568 +4 - chr4 3761390 3761551 chr4,3761390,3761551,-,MIR3,SINE,MIR,-21,187,27,3761369,3761577 +6 - chr4 3761834 3761990 chr4,3761834,3761990,-,L2c,LINE,L2,-181,3194,3030,3761653,3765019 +6 - chr4 3762607 3762725 chr4,3762607,3762725,+,(TGCA)n,Simple_repeat,Simple_repeat,1,114,0,3762607,3762725 -6 + chr4 4321962 4322053 chr4,4321911,4322053,+,MIR,SINE,MIR,31,185,-83,4321881,4322136 +1 + chr4 4329846 4329913 chr4,4329840,4329953,+,L2a,LINE,L2,3309,3423,-3,4326532,4329956 +3 + chr4 4333629 4333698 chr4,4333629,4333698,+,MIR3,SINE,MIR,65,135,-73,4333565,4333771 +6 + chr4 4333727 4334034 chr4,4333727,4334034,+,AluJb,SINE,Alu,7,308,-4,4333721,4334038 +6 + chr4 4477884 4477997 chr4,4477875,4478111,-,MIRb,SINE,MIR,-13,255,10,4477862,4478120 +3 - chr4 4478669 4478837 chr4,4478669,4478837,+,LTR79,LTR,ERVL,6,188,-339,4478664,4479176 -6 + chr4 4542511 4542625 chr4,4542511,4542647,+,MIRb,SINE,MIR,115,258,-10,4542397,4542657 +4 + chr4 4544776 4545060 chr4,4544776,4545174,+,Tigger2a,DNA,TcMar-Tigger,1,393,-41,4544776,4545215 +5 + chr4 4560524 4560559 chr4,4560524,4560680,-,L2b,LINE,L2,0,3387,3220,4560524,4563899 -5 - chr4 4637538 4637665 chr4,4637511,4637665,-,MIRb,SINE,MIR,-102,166,8,4637409,4637672 -2 - chr4 4637735 4637794 chr4,4637735,4637794,+,L2c,LINE,L2,3260,3316,-71,4634476,4637865 +6 + chr4 4648977 4649102 chr4,4648962,4649102,-,MIRb,SINE,MIR,-115,153,4,4648847,4649105 -2 - chr4 4649373 4649542 chr4,4649187,4649624,+,MLT1J,LTR,ERVL-MaLR,38,512,0,4649150,4649624 +1 + chr4 4705673 4705867 chr4,4705432,4705867,+,MLT1J,LTR,ERVL-MaLR,5,471,-41,4705428,4705908 +2 + chr4 4705999 4706074 chr4,4705999,4706074,-,L1MA10,LINE,L1,-2,6332,6258,4705997,4712331 -6 - chr4 4706082 4706198 chr4,4706082,4706198,-,LTR40a,LTR,ERVL,-353,166,43,4705729,4706240 -6 - chr4 4706356 4706766 chr4,4706356,4706766,-,LTR33,LTR,ERVL,-69,446,12,4706287,4706777 -6 - chr4 4707166 4707193 chr4,4707166,4707193,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,28,0,4707166,4707193 +6 + chr4 4707290 4707418 chr4,4707290,4707418,+,L1PA17,LINE,L1,6028,6163,-3,4701263,4707421 +6 + chr4 4707771 4707871 chr4,4707771,4707871,-,MER5A,DNA,hAT-Charlie,-35,154,56,4707736,4707926 -6 - chr4 4708201 4708226 chr4,4708201,4708226,+,(TTTCA)n,Simple_repeat,Simple_repeat,1,26,0,4708201,4708226 +6 + chr4 4709553 4709659 chr4,4709553,4709659,-,MIRc,SINE,MIR,-111,157,48,4709442,4709706 -6 - chr4 4710447 4710572 chr4,4710447,4710572,+,MIR3,SINE,MIR,46,197,-11,4710402,4710583 +6 + chr4 4820801 4820961 chr4,4820801,4820961,+,MIRb,SINE,MIR,19,183,-85,4820783,4821046 +6 + chr4 4821003 4821129 chr4,4821003,4821129,+,MIR,SINE,MIR,23,148,-114,4820981,4821243 +6 + chr4 4821137 4821452 chr4,4821137,4821519,+,MSTA,LTR,ERVL-MaLR,1,428,0,4821137,4821519 +5 + chr4 4846439 4846540 chr4,4846420,4846560,+,MIRb,SINE,MIR,59,216,-52,4846362,4846612 +3 + chr4 4850707 4850807 chr4,4850669,4850807,+,MIR,SINE,MIR,105,260,-2,4850565,4850809 +2 + chr4 6202328 6202593 chr4,6202190,6202647,+,MLT1C,LTR,ERVL-MaLR,6,444,-23,6202185,6202670 +1 + chr4 6202954 6203022 chr4,6202954,6203022,-,MLT1L,LTR,ERVL-MaLR,-335,177,112,6202619,6203133 -6 - chr4 6203022 6203319 chr4,6203022,6203319,-,AluSx,SINE,Alu,-15,297,1,6203007,6203319 -6 - chr4 6203319 6203420 chr4,6203319,6203420,-,MLT1L,LTR,ERVL-MaLR,-401,111,16,6202918,6203435 -6 - chr4 6203427 6203903 chr4,6203427,6203903,-,Arthur1,DNA,hAT-Tip100,-5,3942,3443,6203422,6207345 -6 - chr4 6204041 6204162 chr4,6204041,6204162,+,MER5A,DNA,hAT-Charlie,42,160,-29,6204000,6204191 +6 + chr4 6204255 6204319 chr4,6204255,6204319,-,Arthur1,DNA,hAT-Tip100,-3419,528,465,6200836,6204783 -6 - chr4 6204338 6204552 chr4,6204338,6204552,-,Arthur1,DNA,hAT-Tip100,-3556,391,166,6200782,6204717 -6 - chr4 6204553 6204909 chr4,6204553,6204909,+,MLT1B,LTR,ERVL-MaLR,1,380,-10,6204553,6204919 +6 + chr4 6204905 6205013 chr4,6204905,6205013,-,Arthur1,DNA,hAT-Tip100,-3774,173,64,6201131,6205076 -6 - chr4 6205262 6205394 chr4,6205262,6205394,+,L3,LINE,CR1,3857,4024,-75,6201406,6205469 +6 + chr4 6205419 6205605 chr4,6205419,6205605,+,MIR,SINE,MIR,3,205,-57,6205417,6205662 +6 + chr4 6205612 6206020 chr4,6205612,6206020,-,MLT1C,LTR,ERVL-MaLR,-4,463,25,6205608,6206044 -6 - chr4 6206109 6206315 chr4,6206109,6206315,-,L2a,LINE,L2,-202,3173,2932,6205907,6209246 -6 - chr4 6206373 6206531 chr4,6206373,6206531,-,L2b,LINE,L2,-25,3350,3178,6206348,6209708 -6 - chr4 6206531 6206649 chr4,6206531,6206849,+,AluJr,SINE,Alu,1,302,-10,6206531,6206859 +5 + chr4 6233357 6233680 chr4,6233357,6233680,+,L2a,LINE,L2,3072,3426,0,6230286,6233680 +6 + chr4 6237624 6237831 chr4,6237624,6237831,-,MIR,SINE,MIR,-38,224,13,6237586,6237843 -6 - chr4 6237876 6238007 chr4,6237876,6238007,+,L1ME4a,LINE,L1,5988,6124,0,6231889,6238007 +6 + chr4 6238033 6238317 chr4,6238033,6238339,+,AluSx,SINE,Alu,1,304,-8,6238033,6238347 +5 + chr4 6239441 6239524 chr4,6239382,6239524,-,L1ME4a,LINE,L1,-370,5754,5618,6239012,6245141 -1 - chr4 6239566 6239761 chr4,6239566,6239761,+,MIR,SINE,MIR,14,228,-34,6239553,6239795 +6 + chr4 6670725 6670869 chr4,6670544,6670869,-,MLT1H-int,LTR,ERVL-MaLR,-500,909,588,6670044,6671456 +5 - chr4 6673451 6673747 chr4,6672540,6673747,+,LTR12C,LTR,ERV1,2,1579,0,6672539,6673747 +1 + chr4 6673684 6673747 chr4,6672540,6673747,+,LTR12C,LTR,ERV1,2,1579,0,6672539,6673747 -1 + chr4 6673911 6673958 chr4,6673911,6673958,+,(GCGT)n,Simple_repeat,Simple_repeat,1,47,0,6673911,6673958 +6 + chr4 6687448 6687902 chr4,6687405,6687902,-,LTR2C,LTR,ERV1,0,501,1,6687405,6687902 +5 - chr4 6687902 6687927 chr4,6687902,6687927,-,MER5A,DNA,hAT-Charlie,-165,24,2,6687737,6687928 +6 - chr4 6687939 6688135 chr4,6687939,6688135,+,L2b,LINE,L2,3080,3279,-96,6684860,6688231 -6 + chr4 6688219 6688450 chr4,6688219,6688450,-,MIRb,SINE,MIR,-20,248,6,6688199,6688455 +6 - chr4 6688496 6688896 chr4,6688496,6688911,+,MLT1C,LTR,ERVL-MaLR,6,466,-1,6688491,6688912 -2 + chr4 6689421 6689459 chr4,6689421,6689504,+,MIR3,SINE,MIR,92,178,-30,6689330,6689534 -2 + chr4 6995506 6995747 chr4,6995506,6995811,-,AluSc8,SINE,Alu,-6,305,1,6995500,6995811 -4 - chr4 6998775 6998838 chr4,6998531,6998838,-,AluSx1,SINE,Alu,-5,307,1,6998526,6998838 -2 - chr4 6998838 6998888 chr4,6998838,6998888,+,L1ME3A,LINE,L1,6101,6152,-21,6992738,6998909 +6 + chr4 7033363 7033446 chr4,7033363,7033446,-,MIR,SINE,MIR,-22,240,154,7033341,7033599 +6 - chr4 7033849 7033940 chr4,7033849,7033940,-,MIRb,SINE,MIR,-37,231,130,7033812,7034069 +6 - chr4 7033940 7034053 chr4,7033940,7034229,+,AluSc,SINE,Alu,1,295,-14,7033940,7034243 -2 + chr4 7045759 7045805 chr4,7045759,7045805,-,MIR,SINE,MIR,-216,46,2,7045543,7045806 +6 - chr4 7045915 7045989 chr4,7045915,7045989,-,MER5A1,DNA,hAT-Charlie,0,166,91,7045915,7046079 +6 - chr4 7098075 7098276 chr4,7098075,7098276,-,MLT1C,LTR,ERVL-MaLR,-256,211,1,7097819,7098276 +6 - chr4 7098276 7098406 chr4,7098276,7098406,-,MLT1C-int,LTR,ERVL-MaLR,0,1371,1238,7098276,7099643 +6 - chr4 7098579 7098632 chr4,7098579,7098632,-,L2b,LINE,L2,0,3375,3324,7098579,7101955 +6 - chr4 7098885 7099166 chr4,7098885,7099166,-,L1M5,LINE,L1,-2816,3330,3029,7096069,7102194 +6 - chr4 7099180 7099454 chr4,7099180,7099478,+,AluSq2,SINE,Alu,1,302,-11,7099180,7099489 -2 + chr4 7101240 7101358 chr4,7101046,7101358,-,AluSz6,SINE,Alu,-2,310,1,7101044,7101358 +5 - chr4 7101358 7101558 chr4,7101358,7101558,-,L1MB7,LINE,L1,-946,5200,4990,7100412,7106547 +6 - chr4 7101679 7101723 chr4,7101679,7101723,+,(GTGG)n,Simple_repeat,Simple_repeat,1,44,0,7101679,7101723 -6 + chr4 7102392 7102429 chr4,7102392,7102429,+,GA-rich,Low_complexity,Low_complexity,1,39,0,7102392,7102429 -6 + chr4 7102549 7102859 chr4,7102549,7102859,+,AluSz,SINE,Alu,1,312,0,7102549,7102859 -6 + chr4 7103107 7103210 chr4,7103107,7103210,-,MIR3,SINE,MIR,-52,156,58,7103055,7103267 +6 - chr4 7103177 7103288 chr4,7103177,7103288,+,L2b,LINE,L2,3255,3361,-14,7099923,7103302 -6 + chr4 7754090 7754159 chr4,7753883,7754236,+,THE1A,LTR,ERVL-MaLR,1,355,0,7753883,7754236 +1 + chr4 7772406 7772452 chr4,7772406,7772452,+,L2c,LINE,L2,3299,3346,-41,7769108,7772493 +6 + chr4 7772912 7772936 chr4,7772912,7772936,+,(CAGCTC)n,Simple_repeat,Simple_repeat,1,79,0,7772912,7772936 +6 + chr4 7772936 7772988 chr4,7772936,7772988,+,(CTC)n,Simple_repeat,Simple_repeat,1,52,0,7772936,7772988 +6 + chr4 7774942 7775147 chr4,7774942,7775147,+,AluJb,SINE,Alu,84,291,-21,7774859,7775168 +6 + chr4 7775538 7775629 chr4,7775538,7775629,+,L2a,LINE,L2,3280,3426,0,7772259,7775629 +6 + chr4 7775661 7775873 chr4,7775661,7775873,+,MIR,SINE,MIR,27,256,-6,7775635,7775879 +6 + chr4 7776229 7776367 chr4,7776229,7776367,+,MIR,SINE,MIR,7,152,-110,7776223,7776477 +6 + chr4 7776374 7776415 chr4,7776374,7776415,+,(TGTG)n,Simple_repeat,Simple_repeat,1,41,0,7776374,7776415 +6 + chr4 7777736 7777851 chr4,7777736,7777851,+,L2b,LINE,L2,3133,3258,-117,7774604,7777968 +6 + chr4 7778070 7778240 chr4,7778070,7778240,+,MIR,SINE,MIR,34,200,-68,7778037,7778308 +6 + chr4 7939882 7939941 chr4,7939882,7939941,+,(CCGCCCG)n,Simple_repeat,Simple_repeat,1,59,0,7939882,7939941 +6 + chr4 7940255 7940296 chr4,7940255,7940318,-,MamSINE1,SINE,tRNA-RTE,-120,170,110,7940135,7940427 -5 - chr4 8022892 8023092 chr4,8022892,8023092,+,(TCT)n,Simple_repeat,Simple_repeat,1,206,0,8022892,8023092 +6 + chr4 8066528 8066721 chr4,8066430,8066923,+,L1MB5,LINE,L1,5672,6174,0,8060759,8066923 +1 + chr4 8067060 8067153 chr4,8066937,8067153,-,MIR,SINE,MIR,-3,259,39,8066934,8067191 -2 - chr4 8320283 8320459 chr4,8320283,8320459,+,L2b,LINE,L2,3124,3333,-42,8317160,8320501 +6 + chr4 8320472 8320522 chr4,8320472,8320605,+,MIR,SINE,MIR,44,181,-81,8320429,8320686 +4 + chr4 8322126 8322243 chr4,8322071,8322370,-,AluSp,SINE,Alu,-4,309,7,8322067,8322376 -3 - chr4 8323719 8323743 chr4,8323584,8323743,+,MER63A,DNA,hAT-Blackjack,42,201,-9,8323543,8323752 +2 + chr4 8323856 8323954 chr4,8323856,8323954,+,MIR1_Amn,SINE,MIR,93,182,-48,8323764,8324002 +5 + chr4 8355090 8355240 chr4,8354979,8355240,+,L1M5,LINE,L1,4186,4475,-1671,8350794,8356911 -5 + chr4 8356099 8356214 chr4,8356099,8356214,-,MIRb,SINE,MIR,-15,253,131,8356084,8356344 +6 - chr4 8357408 8357541 chr4,8357408,8357541,+,L1ME4a,LINE,L1,5980,6119,-5,8351429,8357546 -6 + chr4 8357842 8358338 chr4,8357842,8358458,+,MER4D0,LTR,ERV1,1,617,-255,8357842,8358713 -1 + chr4 8453410 8453485 chr4,8453354,8453485,+,AluJb,SINE,Alu,1,133,-179,8453354,8453664 -5 + chr4 8482270 8482372 chr4,8481626,8482372,-,Tigger3,DNA,TcMar-Tigger,-616,2413,1646,8481010,8484017 -1 - chr4 8482398 8482439 chr4,8482398,8482842,-,LTR7,LTR,ERV1,-2,448,1,8482396,8482842 -4 - chr4 8506841 8506868 chr4,8506841,8506868,+,(GCTGG)n,Simple_repeat,Simple_repeat,1,29,0,8506841,8506868 +6 + chr4 8509192 8509242 chr4,8509192,8509242,+,(GGAG)n,Simple_repeat,Simple_repeat,1,52,0,8509192,8509242 +5 + chr4 8509388 8509458 chr4,8509388,8509458,-,LTR16A1,LTR,ERVL,-1,494,397,8509387,8509854 -6 - chr4 8509601 8509700 chr4,8509601,8509700,-,MIRc,SINE,MIR,-108,160,67,8509493,8509766 -6 - chr4 8510262 8510576 chr4,8510183,8510576,-,MLT1D,LTR,ERVL-MaLR,-113,392,4,8510070,8510579 -2 - chr4 8511831 8511848 chr4,8511604,8511848,+,Ricksha_0,DNA,MULE-MuDR,198,432,-1301,8511407,8513149 +2 + chr4 8511838 8512060 chr4,8511838,8512060,+,Ricksha_a,DNA,MULE-MuDR,194,399,-782,8511645,8512842 +6 + chr4 8512060 8512364 chr4,8512060,8512364,-,AluSx1,SINE,Alu,-10,302,3,8512050,8512366 -6 - chr4 8512364 8512610 chr4,8512364,8512753,+,Ricksha_a,DNA,MULE-MuDR,400,796,-385,8511965,8513138 +5 + chr4 8858910 8858933 chr4,8858910,8858933,+,(GGT)n,Simple_repeat,Simple_repeat,1,25,0,8858910,8858933 -6 + chr4 8859046 8859097 chr4,8859046,8859146,+,MIR3,SINE,MIR,87,182,-26,8858960,8859172 -2 + chr4 9922814 9922835 chr4,9922555,9922835,+,ERV3-16A3_LTR,LTR,ERVL,138,414,-8,9922418,9922843 +1 + chr4 9923776 9923829 chr4,9923246,9923829,+,LTR18B,LTR,ERVL,1,601,-13,9923246,9923842 +2 + chr4 9923836 9923965 chr4,9923836,9923965,+,L2c,LINE,L2,3039,3169,-206,9920798,9924171 +6 + chr4 10006629 10006692 chr4,10006629,10007195,+,MER68,LTR,ERVL,1,556,-7,10006629,10007202 +4 + chr4 10068672 10068754 chr4,10068672,10068754,+,L2b,LINE,L2,3133,3218,-157,10065540,10068911 -6 + chr4 10068896 10068980 chr4,10068896,10068980,-,MIRb,SINE,MIR,-10,258,171,10068886,10069150 +6 - chr4 10068982 10069168 chr4,10068982,10069168,+,AluSc8,SINE,Alu,111,299,-12,10068872,10069180 -6 + chr4 10069575 10069748 chr4,10069575,10069748,+,LTR33,LTR,ERVL,319,496,-19,10069257,10069767 -6 + chr4 10071454 10072101 chr4,10071454,10072101,+,Charlie1a,DNA,hAT-Charlie,672,1424,-31,10070783,10072132 -6 + chr4 10072372 10072400 chr4,10072372,10072400,+,(CA)n,Simple_repeat,Simple_repeat,1,28,0,10072372,10072400 -6 + chr4 11469250 11469337 chr4,11469248,11469337,+,MIR3,SINE,MIR,57,137,-71,11469192,11469408 +1 + chr4 11475715 11475755 chr4,11475715,11475755,+,(ATTTTT)n,Simple_repeat,Simple_repeat,1,41,0,11475715,11475755 +6 + chr4 11475756 11476098 chr4,11475756,11476098,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,11475756,11476098 +6 + chr4 11476638 11476722 chr4,11476638,11476722,+,L2a,LINE,L2,3014,3104,-283,11473625,11477005 +6 + chr4 11476754 11478119 chr4,11476754,11478119,+,L1PA14,LINE,L1,4775,6149,-12,11471980,11478131 +6 + chr4 11478129 11478166 chr4,11478129,11478166,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,39,0,11478129,11478166 +6 + chr4 11722437 11722615 chr4,11722242,11722729,+,MLT1F1,LTR,ERVL-MaLR,1,569,0,11722242,11722729 +1 + chr4 11741058 11741235 chr4,11741058,11741435,-,MLT1A0,LTR,ERVL-MaLR,-11,354,1,11741047,11741435 +2 - chr4 11743111 11743173 chr4,11742991,11743173,-,MIRb,SINE,MIR,-43,225,17,11742948,11743189 +4 - chr4 11770613 11770688 chr4,11770613,11770953,+,MER1B,DNA,hAT-Charlie,1,339,0,11770613,11770953 +4 + chr4 11771705 11771830 chr4,11771704,11771830,+,MamRep1879,DNA,hAT-Tip100?,1,127,-89,11771704,11771919 +2 + chr4 11802334 11802405 chr4,11802334,11802405,-,L2a,LINE,L2,-6,3420,3347,11802328,11805751 -6 - chr4 11919354 11919385 chr4,11919041,11919385,+,MER1A,DNA,hAT-Charlie,189,529,0,11918853,11919385 +2 + chr4 12223451 12223497 chr4,12223223,12223497,-,LTR16C,LTR,ERVL,0,489,201,12223223,12223697 -1 - chr4 12230860 12230984 chr4,12230824,12231139,-,AluSc8,SINE,Alu,0,311,1,12230824,12231139 -3 - chr4 12247906 12247978 chr4,12247878,12247978,-,MIR3,SINE,MIR,-48,160,63,12247830,12248040 -2 - chr4 12251115 12251286 chr4,12251115,12251310,-,MIRb,SINE,MIR,-35,233,34,12251080,12251343 -5 - chr4 12859101 12859561 chr4,12859012,12859561,-,L1ME1,LINE,L1,-3279,3265,2728,12855733,12862288 +5 - chr4 12859614 12860582 chr4,12859614,12860582,-,L1ME1,LINE,L1,-4632,2008,1005,12854982,12861586 +6 - chr4 12860573 12860907 chr4,12860573,12860907,-,L1ME1,LINE,L1,-5742,805,466,12854831,12861372 +6 - chr4 12860946 12861287 chr4,12860946,12861287,-,L1ME1,LINE,L1,-6178,369,7,12854768,12861293 +6 - chr4 12861443 12861702 chr4,12861443,12861748,+,L2c,LINE,L2,3008,3387,0,12858436,12861748 -2 + chr4 12947574 12947666 chr4,12947555,12947856,-,AluSx1,SINE,Alu,-11,301,1,12947544,12947856 +5 - chr4 13547582 13547620 chr4,13547529,13547620,+,(TCC)n,Simple_repeat,Simple_repeat,1,93,0,13547529,13547620 -4 + chr4 13655179 13655351 chr4,13655009,13655406,-,LTR16C,LTR,ERVL,-107,382,1,13654902,13655406 -1 - chr4 13777377 13777689 chr4,13777325,13777689,-,THE1B,LTR,ERVL-MaLR,0,364,1,13777325,13777689 +5 - chr4 13777697 13777962 chr4,13777697,13777962,+,L1MC5,LINE,L1,9023,9300,-4,13768675,13777966 -6 + chr4 13778666 13779029 chr4,13778666,13779029,-,THE1A,LTR,ERVL-MaLR,0,355,1,13778666,13779029 +6 - chr4 13779029 13780616 chr4,13779029,13780616,-,THE1A-int,LTR,ERVL-MaLR,0,1580,1,13779029,13780616 +6 - chr4 13780616 13780965 chr4,13780616,13780965,-,THE1A,LTR,ERVL-MaLR,0,355,1,13780616,13780965 +6 - chr4 13780965 13781069 chr4,13780965,13781069,-,MER81,DNA,hAT-Blackjack,-4,110,5,13780961,13781073 +6 - chr4 13781383 13781613 chr4,13781383,13781613,-,L1MC5,LINE,L1,-1561,7743,7507,13779822,13789119 +6 - chr4 13781923 13782009 chr4,13781923,13782009,+,Charlie4z,DNA,hAT-Charlie,83,152,-15,13781841,13782024 -6 + chr4 13820110 13820163 chr4,13819965,13820163,+,MLT1C,LTR,ERVL-MaLR,34,236,-231,13819932,13820394 +1 + chr4 13820155 13820271 chr4,13820155,13820341,+,MLT1C,LTR,ERVL-MaLR,187,377,-90,13819969,13820431 +4 + chr4 13829780 13829801 chr4,13829431,13829801,+,MSTC,LTR,ERVL-MaLR,3,428,0,13829429,13829801 +2 + chr4 13929886 13930156 chr4,13929886,13930156,+,MER102b,DNA,hAT-Charlie,73,321,-10,13929814,13930166 +6 + chr4 13930181 13930350 chr4,13930181,13930350,+,L2,LINE,L2,2792,2964,-455,13927390,13930805 +6 + chr4 13930705 13930866 chr4,13930705,13930866,+,MIRc,SINE,MIR,116,264,-4,13930590,13930870 +6 + chr4 13930918 13931042 chr4,13930918,13931042,+,MIR3,SINE,MIR,19,136,-72,13930900,13931114 +6 + chr4 14111968 14111986 chr4,14111947,14111986,+,A-rich,Low_complexity,Low_complexity,1,39,0,14111947,14111986 +1 + chr4 14126203 14126229 chr4,14125855,14126229,+,MER20B,DNA,hAT-Charlie,30,395,-388,14125826,14126617 +2 + chr4 14127077 14127113 chr4,14126983,14127113,+,MIR,SINE,MIR,25,180,-88,14126959,14127201 +2 + chr4 14127141 14127258 chr4,14127141,14127608,+,LTR16D,LTR,ERVL,147,634,-17,14126995,14127625 +5 + chr4 14138461 14138796 chr4,14138014,14138796,+,Charlie13a,DNA,hAT-Charlie,441,1241,-273,14137574,14139069 +5 + chr4 14138847 14138921 chr4,14138847,14138921,+,Charlie13a,DNA,hAT-Charlie,1329,1403,-111,14137519,14139032 +6 + chr4 14142399 14142496 chr4,14142182,14142516,-,AluSx1,SINE,Alu,-2,310,1,14142180,14142516 -3 - chr4 14383123 14383187 chr4,14382965,14383187,+,LTR67B,LTR,ERVL,1,224,-396,14382965,14383583 -5 + chr4 14385302 14385356 chr4,14385302,14385702,+,MLT1D,LTR,ERVL-MaLR,1,399,-106,14385302,14385808 -2 + chr4 14386093 14386133 chr4,14386011,14386387,-,MSTD,LTR,ERVL-MaLR,0,396,6,14386011,14386392 +3 - chr4 14393890 14393992 chr4,14393890,14394035,+,LTR16D,LTR,ERVL,509,651,0,14393382,14394035 +5 + chr4 14408919 14409078 chr4,14408841,14409223,-,MLT1B,LTR,ERVL-MaLR,0,390,1,14408841,14409223 +1 - chr4 14471068 14471181 chr4,14471068,14471181,+,MIR,SINE,MIR,14,129,-133,14471055,14471314 -6 + chr4 14471194 14474545 chr4,14471194,14474545,-,L1PA4,LINE,L1,-8,6147,2794,14471186,14477338 +5 - chr4 14614303 14614416 chr4,14614303,14614617,+,AluY,SINE,Alu,1,311,0,14614303,14614617 -2 + chr4 14628756 14628980 chr4,14628523,14629549,-,Tigger2b_Pri,DNA,TcMar-Tigger,0,1068,1,14628523,14629549 +5 - chr4 14700743 14700781 chr4,14700662,14700911,+,MIR,SINE,MIR,3,262,0,14700660,14700911 -3 + chr4 14716095 14716169 chr4,14715949,14716173,-,MIRb,SINE,MIR,-6,256,18,14715943,14716190 +3 - chr4 14859543 14859616 chr4,14859499,14859620,-,MIRc,SINE,MIR,-123,145,5,14859376,14859624 +3 - chr4 14888059 14888169 chr4,14888020,14888389,-,THE1A,LTR,ERVL-MaLR,0,355,1,14888020,14888389 +1 - chr4 14910200 14910284 chr4,14910200,14910284,+,L2a,LINE,L2,3304,3426,0,14906897,14910284 -6 + chr4 14977384 14977467 chr4,14977345,14977467,+,MIRb,SINE,MIR,129,246,-22,14977217,14977489 -4 + chr4 14990454 14990554 chr4,14990438,14990704,+,AluJr,SINE,Alu,12,294,-18,14990427,14990722 -3 + chr4 14992712 14992902 chr4,14992571,14992973,-,L1MA7,LINE,L1,-249,6042,5639,14992322,14998611 +3 - chr4 14993329 14993454 chr4,14993276,14993454,-,MamRTE1,LINE,RTE-BovB,-320,3492,3282,14992956,14996735 +4 - chr4 14993541 14993633 chr4,14993541,14993633,+,L2a,LINE,L2,3335,3426,0,14990207,14993633 -6 + chr4 14993928 14994037 chr4,14993928,14994037,-,MamRTE1,LINE,RTE-BovB,-739,3073,2965,14993189,14997001 +6 - chr4 14994059 14994097 chr4,14994059,14994097,+,(TTA)n,Simple_repeat,Simple_repeat,1,39,0,14994059,14994097 -6 + chr4 14994182 14994204 chr4,14994182,14994204,+,(TCCT)n,Simple_repeat,Simple_repeat,1,69,0,14994182,14994204 -6 + chr4 14994204 14994250 chr4,14994204,14994250,+,(TCTTT)n,Simple_repeat,Simple_repeat,1,46,0,14994204,14994250 -6 + chr4 14994278 14994312 chr4,14994278,14994312,-,L2b,LINE,L2,-10,3365,3329,14994268,14997640 +6 - chr4 14994401 14994505 chr4,14994401,14994872,-,L2,LINE,L2,-815,2604,2109,14993586,14996980 +1 - chr4 15227848 15227960 chr4,15227761,15228326,-,MLT2B3,LTR,ERVL,0,554,1,15227761,15228326 +1 - chr4 15263397 15263464 chr4,15263271,15263566,+,L1M2,LINE,L1,80,386,-6782,15263192,15270348 -3 + chr4 15358141 15358590 chr4,15356100,15358590,-,L1PA7,LINE,L1,0,6154,3635,15356100,15362224 +5 - chr4 15419945 15420032 chr4,15419945,15420187,+,L2,LINE,L2,2747,3002,-417,15417199,15420604 -1 + chr4 15563698 15563849 chr4,15563651,15563849,-,MLT1O,LTR,ERVL-MaLR,-6,536,321,15563645,15564169 +5 - chr4 15564239 15564253 chr4,15564239,15564363,-,AluJr,SINE,Alu,-187,125,2,15564052,15564364 +1 - chr4 16226805 16226850 chr4,16226805,16226850,+,(CGG)n,Simple_repeat,Simple_repeat,1,47,0,16226805,16226850 +6 + chr4 16238771 16238871 chr4,16238771,16238876,-,L2b,LINE,L2,-20,3355,3245,16238751,16242120 -3 - chr4 16256921 16257123 chr4,16256921,16257123,-,MIR,SINE,MIR,0,268,47,16256921,16257169 -6 - chr4 16257145 16257270 chr4,16257145,16257270,+,L2a,LINE,L2,2315,2434,-985,16254831,16258255 +6 + chr4 16257279 16257398 chr4,16257279,16257398,-,MSTA,LTR,ERVL-MaLR,-42,386,247,16257237,16257644 -6 - chr4 16257604 16258177 chr4,16257604,16258177,+,L2a,LINE,L2,2742,3426,0,16254863,16258177 +6 + chr4 16288884 16289016 chr4,16288805,16289016,-,MIRb,SINE,MIR,-14,254,37,16288791,16289052 -2 - chr4 16320065 16320140 chr4,16319535,16320229,+,L1ME4b,LINE,L1,14,713,-179,16319522,16320408 +5 + chr4 16400430 16400533 chr4,16400257,16400554,-,AluJr,SINE,Alu,-30,282,2,16400227,16400555 -1 - chr4 16421060 16421133 chr4,16420860,16421163,+,LTR16E1,LTR,ERVL,234,536,-2,16420627,16421165 +3 + chr4 16426365 16426429 chr4,16426283,16426429,-,L1MD1,LINE,L1,-1942,4595,4468,16424341,16430896 -2 - chr4 16426412 16426440 chr4,16426412,16427305,-,L1MD1,LINE,L1,-5752,881,18,16420660,16427322 -4 - chr4 16434105 16434242 chr4,16434105,16434344,+,MER113B,DNA,hAT-Charlie,7,243,-59,16434099,16434403 +5 + chr4 16973275 16973441 chr4,16972913,16973441,-,LTR84b,LTR,ERVL,-201,560,1,16972712,16973441 +5 - chr4 17060707 17060805 chr4,17060624,17061000,-,THE1D,LTR,ERVL-MaLR,0,381,1,17060624,17061000 +3 - chr4 17171777 17171803 chr4,17171777,17171989,+,MER20,DNA,hAT-Charlie,1,219,0,17171777,17171989 -2 + chr4 17175026 17175088 chr4,17175026,17175162,+,MIRb,SINE,MIR,111,268,0,17174916,17175162 -2 + chr4 17176128 17176387 chr4,17176128,17176387,+,Eulor5A,DNA?,DNA?,35,300,-16,17176094,17176403 -6 + chr4 17176523 17176557 chr4,17176523,17176557,+,(TGT)n,Simple_repeat,Simple_repeat,1,34,0,17176523,17176557 -6 + chr4 17181852 17181896 chr4,17181279,17182188,+,Tigger3b,DNA,TcMar-Tigger,287,1230,-1,17180993,17182189 -3 + chr4 17185869 17186059 chr4,17185869,17186254,-,MLT1B,LTR,ERVL-MaLR,-5,385,1,17185864,17186254 +1 - chr4 17613932 17614038 chr4,17613790,17614061,+,AluJb,SINE,Alu,2,302,-10,17613789,17614071 -3 + chr4 17614254 17614388 chr4,17614254,17614388,-,MIR3,SINE,MIR,-78,152,20,17614176,17614407 +6 - chr4 18488062 18488124 chr4,18488002,18488124,-,L2c,LINE,L2,-14,3373,3245,18487988,18491368 +5 - chr4 18488245 18488373 chr4,18488245,18488427,+,MIRb,SINE,MIR,8,191,-77,18488238,18488504 -2 + chr4 18489287 18489508 chr4,18488882,18489919,+,L1P3,LINE,L1,6,1043,-5418,18488877,18495337 -1 + chr4 19098199 19098375 chr4,19098193,19098375,-,MLT1H1,LTR,ERVL-MaLR,-349,206,31,19097844,19098405 -1 - chr4 19098507 19098691 chr4,19098507,19098691,+,MIRc,SINE,MIR,50,265,-3,19098458,19098694 +6 + chr4 19257951 19258156 chr4,19257835,19258156,+,MER44A,DNA,TcMar-Tigger,1,337,-2,19257835,19258158 -5 + chr4 19258156 19258226 chr4,19258156,19258226,-,MLT1A0,LTR,ERVL-MaLR,-296,69,1,19257860,19258226 +6 - chr4 19456646 19456813 chr4,19456582,19456813,-,MLT1I,LTR,ERVL-MaLR,-22,389,161,19456560,19456973 +4 - chr4 19456817 19456994 chr4,19456817,19457109,+,AluY,SINE,Alu,34,304,-7,19456784,19457116 -1 + chr4 19533548 19533618 chr4,19533514,19533653,-,MIRb,SINE,MIR,-96,172,23,19533418,19533675 -3 - chr4 19747179 19747318 chr4,19747133,19747516,-,MLT1A,LTR,ERVL-MaLR,-1,373,4,19747132,19747519 +5 - chr4 19754535 19754591 chr4,19754535,19754594,-,MIR3,SINE,MIR,-71,137,78,19754464,19754671 +1 - chr4 19856276 19856395 chr4,19856267,19856603,+,MLT1F2,LTR,ERVL-MaLR,218,557,-3,19856050,19856606 +3 + chr4 19909212 19909341 chr4,19908991,19909341,+,MLT2B1,LTR,ERVL,2,382,-138,19908990,19909479 +2 + chr4 19909341 19909373 chr4,19909341,19909373,+,(TG)n,Simple_repeat,Simple_repeat,1,32,0,19909341,19909373 +6 + chr4 19909373 19909406 chr4,19909373,19909406,+,MLT2B1,LTR,ERVL,374,406,-8,19909000,19909414 +6 + chr4 19909410 19909469 chr4,19909410,19909469,-,MIR3,SINE,MIR,-115,93,34,19909295,19909502 -6 - chr4 20392189 20392263 chr4,20392050,20393212,-,Tigger3b,DNA,TcMar-Tigger,0,1231,1,20392050,20393212 -1 - chr4 20766808 20767062 chr4,20766807,20767062,+,MIRb,SINE,MIR,3,260,-2,20766805,20767064 +1 + chr4 21315276 21315340 chr4,21315160,21315582,+,Tigger2a,DNA,TcMar-Tigger,1,434,0,21315160,21315582 +3 + chr4 21316282 21316341 chr4,21316035,21316341,+,L2c,LINE,L2,3079,3385,-2,21312957,21316343 +2 + chr4 21316347 21316375 chr4,21316347,21316375,+,A-rich,Low_complexity,Low_complexity,1,28,0,21316347,21316375 +6 + chr4 21316375 21316477 chr4,21316375,21316477,+,MamTip2,DNA,hAT-Tip100,44,146,-159,21316332,21316636 +6 + chr4 21582096 21582125 chr4,21582093,21582211,+,MER112,DNA,hAT-Charlie,113,227,-34,21581981,21582245 +1 + chr4 21613332 21613641 chr4,21613135,21613641,+,MLT1F,LTR,ERVL-MaLR,1,560,0,21613135,21613641 +2 + chr4 21613688 21613728 chr4,21613688,21613858,-,L4_A_Mam,LINE,RTE-X,-2876,2114,1945,21610812,21615802 -5 - chr4 21697483 21697509 chr4,21697483,21697509,+,(AAT)n,Simple_repeat,Simple_repeat,1,26,0,21697483,21697509 +6 + chr4 21718477 21718535 chr4,21718456,21718535,-,L1PA10,LINE,L1,-3,6165,6091,21718453,21724625 -2 - chr4 21718535 21718571 chr4,21718535,21718571,+,5S,rRNA,rRNA,7,42,-79,21718529,21718650 +6 + chr4 22059309 22059360 chr4,22059309,22059570,+,LTR78,LTR,ERV1,970,1261,-43,22058340,22059613 +4 + chr4 22329316 22329694 chr4,22329291,22329694,-,L1PA16,LINE,L1,-3,6163,5760,22329288,22335453 -2 - chr4 22329694 22329735 chr4,22329694,22329735,+,MER5A,DNA,hAT-Charlie,127,167,-22,22329568,22329757 +6 + chr4 22997551 22997613 chr4,22997345,22997696,+,THE1B,LTR,ERVL-MaLR,1,364,0,22997345,22997696 +1 + chr4 22999585 22999677 chr4,22999568,22999677,-,L2b,LINE,L2,-1,3374,3257,22999567,23002933 -1 - chr4 23003150 23003243 chr4,23002790,23003282,-,MLT1F,LTR,ERVL-MaLR,-2,546,3,23002788,23003284 -1 - chr4 23040690 23040822 chr4,23040668,23040822,+,LTR33,LTR,ERVL,51,211,-304,23040618,23041126 +2 + chr4 23041057 23041220 chr4,23041057,23041220,-,MIR,SINE,MIR,-77,185,12,23040980,23041231 -6 - chr4 23055886 23055932 chr4,23055886,23055932,-,MIRb,SINE,MIR,-19,249,207,23055867,23056138 -6 - chr4 23056275 23056578 chr4,23056275,23056578,-,AluSx1,SINE,Alu,-8,304,1,23056267,23056578 -6 - chr4 23056602 23056768 chr4,23056602,23056768,-,L2a,LINE,L2,0,3426,3213,23056602,23059980 -6 - chr4 23056792 23056862 chr4,23056792,23056989,-,ORSL-2b,DNA,hAT-Tip100,-291,217,24,23056501,23057012 -5 - chr4 23105502 23105616 chr4,23105340,23105700,+,THE1B,LTR,ERVL-MaLR,1,364,0,23105340,23105700 +1 + chr4 23121465 23121541 chr4,23121465,23121541,-,MamRTE1,LINE,RTE-BovB,-3060,752,675,23118405,23122215 -6 - chr4 23122375 23122436 chr4,23122233,23122451,+,MIR,SINE,MIR,4,249,-13,23122230,23122464 +3 + chr4 23123443 23123486 chr4,23123443,23123486,+,A-rich,Low_complexity,Low_complexity,1,43,0,23123443,23123486 +6 + chr4 23234768 23234964 chr4,23234768,23234964,-,MIR3,SINE,MIR,-33,197,4,23234735,23234967 +6 - chr4 23285437 23285573 chr4,23284199,23285930,-,L1MEd,LINE,L1,-3280,2866,894,23280919,23286823 +1 - chr4 23723262 23723321 chr4,23722872,23723321,-,LTR7,LTR,ERV1,-2,448,1,23722870,23723321 +5 - chr4 23723321 23723470 chr4,23723321,23723490,-,HERVH-int,LTR,ERV1,0,7713,7550,23723321,23731039 +2 - chr4 23727271 23727417 chr4,23724337,23727417,-,HERVH-int,LTR,ERV1,-4718,2995,1,23719619,23727417 +4 - chr4 23727419 23727431 chr4,23727419,23727866,-,LTR7,LTR,ERV1,-2,448,3,23727417,23727868 +2 - chr4 23727721 23727866 chr4,23727419,23727866,-,LTR7,LTR,ERV1,-2,448,3,23727417,23727868 +4 - chr4 23727868 23727899 chr4,23727868,23728019,+,AluY,SINE,Alu,149,302,-9,23727720,23728028 -2 + chr4 23762927 23763178 chr4,23762717,23763262,+,MLT2A2,LTR,ERVL,1,552,-2,23762717,23763264 +1 + chr4 23768416 23768583 chr4,23768416,23768583,-,L2a,LINE,L2,0,3426,3251,23768416,23771833 -6 - chr4 23768591 23768652 chr4,23768591,23768782,+,LTR101_Mam,LTR,ERVL,486,690,-139,23768106,23768921 +5 + chr4 24659856 24660009 chr4,24659710,24660009,+,MLT1H,LTR,ERVL-MaLR,1,341,-208,24659710,24660217 +1 + chr4 24669801 24670020 chr4,24669801,24670020,-,LTR16A,LTR,ERVL,-30,421,206,24669771,24670225 -6 - chr4 24670020 24670061 chr4,24670020,24670061,-,MSTA,LTR,ERVL-MaLR,0,428,395,24670020,24670455 -6 - chr4 24670061 24670368 chr4,24670061,24670368,+,AluSg,SINE,Alu,1,310,0,24670061,24670368 +6 + chr4 24670368 24670750 chr4,24670368,24670750,-,MSTA,LTR,ERVL-MaLR,-34,394,1,24670334,24670750 -6 - chr4 24670750 24670932 chr4,24670750,24670932,-,LTR16A,LTR,ERVL,-246,205,1,24670504,24670932 -6 - chr4 24670945 24671361 chr4,24670945,24671361,+,MSTB,LTR,ERVL-MaLR,1,415,-11,24670945,24671372 +6 + chr4 25220403 25220818 chr4,25220292,25220818,+,MER68,LTR,ERVL,3,563,0,25220290,25220818 +1 + chr4 25770457 25770502 chr4,25770457,25770794,+,AluSx1,SINE,Alu,1,312,0,25770457,25770794 +4 + chr4 25773332 25773479 chr4,25773095,25773479,+,L1ME3E,LINE,L1,5849,6233,-9,25767247,25773488 +2 + chr4 25869380 25869550 chr4,25869380,25869560,-,MIRc,SINE,MIR,-67,201,7,25869313,25869566 +1 - chr4 26860138 26860244 chr4,26860086,26860273,+,MIR,SINE,MIR,57,252,-10,26860030,26860283 -1 + chr4 27133996 27134226 chr4,27133660,27134226,-,LTR27B,LTR,ERV1,0,594,1,27133660,27134226 +5 - chr4 27138285 27138446 chr4,27138224,27138446,-,MLT1K,LTR,ERVL-MaLR,-45,550,331,27138179,27138776 +3 - chr4 27208027 27208067 chr4,27208027,27208067,+,(TG)n,Simple_repeat,Simple_repeat,1,40,0,27208027,27208067 -6 + chr4 27208403 27208563 chr4,27208403,27208563,+,MIR,SINE,MIR,13,165,-97,27208391,27208660 -6 + chr4 27208563 27208853 chr4,27208563,27208853,+,LTR33B,LTR,ERVL,3,313,-190,27208561,27209043 -6 + chr4 27208954 27209084 chr4,27208954,27209084,+,LTR33B,LTR,ERVL,371,503,0,27208584,27209084 -6 + chr4 27209084 27209185 chr4,27209084,27209185,+,MIR,SINE,MIR,159,259,-3,27208926,27209188 -6 + chr4 27209326 27209415 chr4,27209326,27209415,+,MIR,SINE,MIR,142,237,-25,27209185,27209440 -6 + chr4 27217479 27217563 chr4,27217463,27217738,-,L2c,LINE,L2,-598,2821,2529,27216865,27220266 -1 - chr4 27231364 27231521 chr4,27228880,27232367,-,L1PA4,LINE,L1,0,6155,2659,27228880,27235025 -3 - chr4 27280270 27280548 chr4,27280239,27280548,-,AluY,SINE,Alu,-3,308,1,27280236,27280548 -2 - chr4 27280658 27281040 chr4,27280658,27281040,+,L2,LINE,L2,2655,3060,-359,27278004,27281399 +6 + chr4 27281189 27281678 chr4,27281189,27281678,+,L1ME1,LINE,L1,5436,5926,-253,27275754,27281931 +6 + chr4 27281690 27281987 chr4,27281690,27281987,+,MER2,DNA,TcMar-Tigger,10,343,-2,27281681,27281989 +6 + chr4 27282075 27282225 chr4,27282075,27282274,+,L1ME1,LINE,L1,5980,6179,0,27276096,27282274 +5 + chr4 27984766 27984996 chr4,27984766,27984996,-,LTR50,LTR,ERVL,-576,219,1,27984190,27984996 +6 - chr4 28362279 28362296 chr4,28362269,28362296,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,28362269,28362296 -5 + chr4 28370783 28370807 chr4,28370783,28370807,+,(GTTT)n,Simple_repeat,Simple_repeat,1,24,0,28370783,28370807 -6 + chr4 28393204 28393331 chr4,28393066,28393331,+,AluSz,SINE,Alu,1,266,-46,28393066,28393377 -4 + chr4 28393331 28393350 chr4,28393331,28393409,+,L1MC3,LINE,L1,7456,7610,-175,28385876,28393584 -2 + chr4 28394196 28394288 chr4,28394147,28394288,-,MLT1I,LTR,ERVL-MaLR,-35,376,230,28394112,28394517 +4 - chr4 28402652 28402864 chr4,28402359,28403146,-,LTR1A2,LTR,ERV1,0,837,34,28402359,28403179 +1 - chr4 28435449 28435790 chr4,28434217,28435950,+,LTR49-int,LTR,ERV1,4589,6330,-1,28429629,28435951 +1 + chr4 28996524 28996871 chr4,28996457,28996908,+,ERV3-16A3_I-int,LTR,ERVL,2949,3420,-2247,28993509,28999155 +1 + chr4 29047258 29047334 chr4,29047065,29047334,+,MSTD,LTR,ERVL-MaLR,1,301,-95,29047065,29047429 +2 + chr4 29047334 29048716 chr4,29047334,29048716,+,LTR12C,LTR,ERV1,3,1579,0,29047332,29048716 +6 + chr4 29048716 29048765 chr4,29048716,29048813,+,MSTD,LTR,ERVL-MaLR,302,396,0,29048415,29048813 +5 + chr4 29118308 29118621 chr4,29117170,29118621,+,LTR12C,LTR,ERV1,3,1579,0,29117168,29118621 +1 + chr4 29118621 29118644 chr4,29118621,29119637,-,L1MC1,LINE,L1,-630,5703,4660,29117991,29124296 -4 - chr4 29118732 29118862 chr4,29118621,29119637,-,L1MC1,LINE,L1,-630,5703,4660,29117991,29124296 -3 - chr4 29214398 29214454 chr4,29214303,29214836,+,L1M4,LINE,L1,4492,4980,-1166,29209812,29216002 +1 + chr4 29215288 29215350 chr4,29214848,29215350,+,L1M4,LINE,L1,5091,5607,-577,29209758,29215927 +2 + chr4 29215350 29215486 chr4,29215350,29215616,+,L1PA13,LINE,L1,5888,6156,-7,29209463,29215623 +4 + chr4 31196354 31196461 chr4,31196234,31196489,+,MLT1D,LTR,ERVL-MaLR,101,340,-208,31196134,31196697 +3 + chr4 31350284 31350351 chr4,31349865,31350457,-,MER92B,LTR,ERV1,-37,599,1,31349828,31350457 -1 - chr4 31351192 31351467 chr4,31351172,31351467,-,AluSx,SINE,Alu,-15,297,1,31351157,31351467 -2 - chr4 31351660 31351725 chr4,31351660,31352051,+,MLT1B,LTR,ERVL-MaLR,1,388,-2,31351660,31352053 +5 + chr4 31506666 31506825 chr4,31501795,31507425,+,HERVL-int,LTR,ERVL,1,5654,0,31501795,31507425 +1 + chr4 31557499 31557594 chr4,31557303,31557783,+,MLT1H,LTR,ERVL-MaLR,1,537,-12,31557303,31557795 +3 + chr4 31558762 31558821 chr4,31558762,31558823,+,L4_C_Mam,LINE,RTE-X,4269,4329,-809,31554494,31559632 +5 + chr4 31997397 31997789 chr4,31996206,31997789,+,LTR12C,LTR,ERV1,3,1579,0,31996204,31997789 +1 + chr4 32155314 32155406 chr4,32155263,32155427,-,FLAM_A,SINE,Alu,0,142,1,32155263,32155427 -5 - chr4 33881615 33881754 chr4,33881135,33882097,-,HERV16-int,LTR,ERVL,-3516,1480,499,33877619,33882595 -1 - chr4 33897266 33897381 chr4,33897266,33897381,+,MIR,SINE,MIR,126,262,0,33897141,33897381 -6 + chr4 33897673 33897831 chr4,33897673,33897831,+,MLT1A1,LTR,ERVL-MaLR,1,157,-251,33897673,33898082 -6 + chr4 33897831 33898137 chr4,33897831,33898137,+,AluJb,SINE,Alu,1,295,-17,33897831,33898154 -6 + chr4 33898137 33898319 chr4,33898137,33898400,+,MLT1A1,LTR,ERVL-MaLR,158,408,0,33897980,33898400 -2 + chr4 33947409 33947524 chr4,33946908,33948054,+,L1MC1,LINE,L1,5186,6333,0,33941723,33948054 -3 + chr4 33970791 33970956 chr4,33970769,33971297,+,MER67C,LTR,ERV1,162,694,-17,33970608,33971314 -3 + chr4 33979914 33979936 chr4,33979914,33979959,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,45,0,33979914,33979959 +5 + chr4 34039835 34039893 chr4,34039758,34040110,-,THE1A,LTR,ERVL-MaLR,0,355,1,34039758,34040110 +1 - chr4 34123506 34123603 chr4,34122858,34123603,+,L2a,LINE,L2,2439,3237,-189,34120420,34123792 -5 + chr4 34123708 34123724 chr4,34123708,34123750,-,LTR33,LTR,ERVL,0,515,472,34123708,34124221 +2 - chr4 34664558 34664610 chr4,34664091,34664801,-,L1MA8,LINE,L1,-6415,615,1,34657676,34664801 -3 - chr4 34666558 34666610 chr4,34666326,34666692,+,THE1B,LTR,ERVL-MaLR,1,364,0,34666326,34666692 +3 + chr4 36245172 36245310 chr4,36245152,36245446,-,AluSz,SINE,Alu,-14,298,5,36245138,36245450 -3 - chr4 36248482 36248606 chr4,36248448,36248761,-,AluSz,SINE,Alu,0,312,1,36248448,36248761 -3 - chr4 36259837 36260029 chr4,36259800,36260117,-,AluJo,SINE,Alu,-4,308,2,36259796,36260118 -3 - chr4 36274015 36274172 chr4,36274015,36274172,+,L1MC5,LINE,L1,8909,9065,-239,36265107,36274411 +6 + chr4 36311768 36311779 chr4,36311768,36311833,+,L2b,LINE,L2,3307,3374,-1,36308462,36311834 -2 + chr4 36392081 36392286 chr4,36392060,36392286,-,MIRb,SINE,MIR,-12,256,44,36392048,36392329 +4 - chr4 36582657 36582710 chr4,36582354,36582710,-,Tigger3c,DNA,TcMar-Tigger,0,602,231,36582354,36582940 +4 - chr4 36584665 36584796 chr4,36584513,36585052,+,L2a,LINE,L2,2784,3426,0,36581730,36585052 -3 + chr4 36615418 36615526 chr4,36615335,36615690,-,THE1D,LTR,ERVL-MaLR,0,381,1,36615335,36615690 +3 - chr4 36641850 36641900 chr4,36641714,36642024,+,AluY,SINE,Alu,2,310,-1,36641713,36642025 -1 + chr4 37001816 37001895 chr4,37001705,37002035,+,MER48,LTR,ERV1,10,340,-67,37001696,37002102 +1 + chr4 37110742 37111043 chr4,37110729,37111114,+,LTR32,LTR,ERVL,75,457,0,37110655,37111114 +5 + chr4 37125106 37125253 chr4,37125106,37125253,+,MLT1H,LTR,ERVL-MaLR,210,354,-195,37124897,37125448 +6 + chr4 37125273 37125303 chr4,37125273,37125303,+,(CAAGC)n,Simple_repeat,Simple_repeat,1,30,0,37125273,37125303 +6 + chr4 38287161 38287228 chr4,38287154,38287228,-,MLT1M,LTR,ERVL-MaLR,-462,210,128,38286692,38287355 -2 - chr4 38390754 38391006 chr4,38390609,38391006,+,MSTA,LTR,ERVL-MaLR,1,428,0,38390609,38391006 +1 + chr4 38391006 38391204 chr4,38391006,38391204,+,MLT1J1,LTR,ERVL-MaLR,240,444,0,38390767,38391204 +6 + chr4 38391313 38391675 chr4,38391313,38391726,+,MSTA,LTR,ERVL-MaLR,1,428,0,38391313,38391726 +5 + chr4 38420662 38420725 chr4,38420657,38420725,-,MER112,DNA,hAT-Charlie,-191,70,3,38420466,38420727 +5 - chr4 38420735 38421019 chr4,38420735,38421019,-,MER102a,DNA,hAT-Charlie,-2,328,33,38420733,38421051 +6 - chr4 38431204 38431323 chr4,38431117,38431323,-,MIRb,SINE,MIR,-20,248,28,38431097,38431350 +4 - chr4 38452573 38452814 chr4,38452497,38452869,-,MLT1J1,LTR,ERVL-MaLR,-1,443,1,38452496,38452869 +3 - chr4 38453223 38453238 chr4,38453075,38453238,+,MIRb,SINE,MIR,63,238,-30,38453013,38453268 -4 + chr4 38453241 38453644 chr4,38453241,38453644,-,L3,LINE,CR1,-82,4017,3541,38453159,38457184 +6 - chr4 38453654 38453921 chr4,38453654,38454196,-,MLT1J,LTR,ERVL-MaLR,0,512,3,38453654,38454198 +2 - chr4 38517094 38517182 chr4,38516971,38517221,-,MIRb,SINE,MIR,-8,260,3,38516963,38517223 -3 - chr4 38517736 38517861 chr4,38517736,38517861,-,MER5B,DNA,hAT-Charlie,-5,173,59,38517731,38517919 -6 - chr4 38517861 38518056 chr4,38517861,38518153,-,AluSx,SINE,Alu,-18,294,1,38517843,38518153 -5 - chr4 38564003 38564014 chr4,38563858,38564014,-,MamRTE1,LINE,RTE-BovB,-3649,163,8,38560209,38564021 -1 - chr4 38614625 38614708 chr4,38614587,38614942,-,L1ME3G,LINE,L1,-53,871,487,38614534,38615428 +3 - chr4 38618265 38618326 chr4,38618244,38618541,-,AluSx1,SINE,Alu,-12,300,3,38618232,38618543 +5 - chr4 38619124 38619181 chr4,38618882,38619181,+,AluSz6,SINE,Alu,2,299,-13,38618881,38619194 -4 + chr4 38619181 38619286 chr4,38619181,38619286,-,MIRb,SINE,MIR,-130,138,38,38619051,38619323 +6 - chr4 38619395 38619437 chr4,38619395,38619470,-,MIR3,SINE,MIR,-16,192,118,38619379,38619587 +1 - chr4 38619710 38619935 chr4,38619710,38619935,+,MER30,DNA,hAT-Charlie,1,230,0,38619710,38619935 -6 + chr4 38624422 38624503 chr4,38624273,38624503,-,MIRc,SINE,MIR,-38,230,2,38624235,38624504 +4 - chr4 38624826 38624906 chr4,38624826,38624906,-,L4_C_Mam,LINE,RTE-X,-206,4932,4843,38624620,38629748 +6 - chr4 38625005 38625283 chr4,38625005,38625305,+,AluSz,SINE,Alu,1,301,-11,38625005,38625316 -5 + chr4 38625334 38625356 chr4,38625309,38625356,+,(AT)n,Simple_repeat,Simple_repeat,1,47,0,38625309,38625356 -5 + chr4 38625356 38625383 chr4,38625356,38625383,+,(GA)n,Simple_repeat,Simple_repeat,1,27,0,38625356,38625383 -6 + chr4 38626408 38626689 chr4,38626388,38626689,-,AluSx1,SINE,Alu,-11,301,1,38626377,38626689 +5 - chr4 38626721 38628102 chr4,38626721,38628102,+,LTR12C,LTR,ERV1,2,1579,0,38626720,38628102 -2 + chr4 38664310 38664363 chr4,38664310,38664363,+,(CGCC)n,Simple_repeat,Simple_repeat,1,55,0,38664310,38664363 -6 + chr4 39112683 39112802 chr4,39112683,39112802,+,Kanga1c,DNA,TcMar-Tc2,1,141,-588,39112683,39113390 -6 + chr4 39112875 39112942 chr4,39112875,39112942,+,Kanga1c,DNA,TcMar-Tc2,660,726,-3,39112216,39112945 -6 + chr4 39126710 39126818 chr4,39126710,39127033,+,MER84,LTR,ERV1,1,317,-190,39126710,39127223 -1 + chr4 39135287 39135432 chr4,39135110,39135432,-,LTR40b,LTR,ERVL,-15,447,77,39135095,39135508 -2 - chr4 39135469 39135608 chr4,39135469,39135617,-,LTR41,LTR,ERVL,-605,163,5,39134864,39135621 -5 - chr4 39531969 39532079 chr4,39531937,39532079,-,AluJb,SINE,Alu,-3,309,164,39531934,39532242 -2 - chr4 39532079 39532130 chr4,39532079,39532219,+,THE1B,LTR,ERVL-MaLR,4,192,-236,39532076,39532455 +4 + chr4 39587923 39588059 chr4,39587808,39588242,+,MLT1G3,LTR,ERVL-MaLR,103,595,0,39587706,39588242 +3 + chr4 39592673 39594707 chr4,39592670,39595567,+,L1PA3,LINE,L1,3257,6155,0,39589414,39595567 +5 + chr4 39639499 39639549 chr4,39639499,39639781,+,AluSz,SINE,Alu,2,285,-27,39639498,39639808 +4 + chr4 39641694 39641792 chr4,39641503,39641956,+,MLT1F,LTR,ERVL-MaLR,3,499,-49,39641501,39642005 +3 + chr4 39650377 39650454 chr4,39650366,39650456,-,AluJo,SINE,Alu,-187,125,36,39650179,39650491 -3 - chr4 39651266 39651411 chr4,39651243,39651411,-,AluSx,SINE,Alu,-11,301,134,39651232,39651544 -5 - chr4 39651412 39651757 chr4,39651412,39651757,-,AluSx1,SINE,Alu,0,312,1,39651412,39651757 -6 - chr4 39651758 39651839 chr4,39651758,39651839,+,MER57A-int,LTR,ERV1,5571,5649,-538,39646188,39652377 +6 + chr4 39651867 39652046 chr4,39651867,39652046,+,LTR54,LTR,ERV1,107,305,-193,39651761,39652239 +6 + chr4 39652046 39652072 chr4,39652046,39652354,-,AluY,SINE,Alu,-2,309,1,39652044,39652354 -5 - chr4 39653204 39653465 chr4,39653192,39653487,-,AluJb,SINE,Alu,-17,295,1,39653175,39653487 -1 - chr4 39654387 39654509 chr4,39654364,39654666,-,AluSq2,SINE,Alu,-11,302,1,39654353,39654666 -3 - chr4 39666228 39666644 chr4,39666228,39666696,+,L3,LINE,CR1,2369,2915,-1184,39663860,39667880 +5 + chr4 40166675 40166712 chr4,40166407,40166712,+,AluSp,SINE,Alu,1,306,-7,40166407,40166719 +1 + chr4 40166736 40166983 chr4,40166736,40166983,-,L1MA3,LINE,L1,0,6305,6042,40166736,40173024 -6 - chr4 40167201 40167831 chr4,40167201,40168717,+,L1MEj,LINE,L1,1126,2930,-3470,40166076,40172187 +5 + chr4 40265983 40266016 chr4,40265839,40266016,-,MER91A,DNA,hAT-Tip100,-6,190,1,40265833,40266016 -2 - chr4 40266290 40266457 chr4,40266290,40266892,-,MER4A1_,LTR,ERV1,-4,596,1,40266286,40266892 -5 - chr4 40316647 40316730 chr4,40316647,40316730,+,(TTTC)n,Simple_repeat,Simple_repeat,1,86,0,40316647,40316730 +6 + chr4 40326710 40326736 chr4,40326638,40326736,+,MER96B,DNA,hAT-Tip100,162,234,-183,40326477,40326919 +2 + chr4 40330209 40330419 chr4,40330209,40330465,+,MLT1B,LTR,ERVL-MaLR,163,390,0,40330047,40330465 +5 + chr4 40426788 40426834 chr4,40426646,40426834,-,MER2,DNA,TcMar-Tigger,-123,222,6,40426523,40426839 -2 - chr4 40426858 40426947 chr4,40426858,40426947,+,MamRep137,DNA,TcMar-Tigger,106,194,-316,40426753,40427263 +6 + chr4 40426948 40427206 chr4,40426948,40427206,+,MamRep137,DNA,TcMar-Tigger,248,509,-1,40426701,40427207 +6 + chr4 40427206 40427362 chr4,40427206,40427362,-,L2c,LINE,L2,-170,3217,3058,40427036,40430419 -6 - chr4 40427488 40427564 chr4,40427488,40427564,-,MER103C,DNA,hAT-Charlie,0,297,219,40427488,40427782 -6 - chr4 41220074 41220228 chr4,41219958,41220228,+,L2c,LINE,L2,2923,3202,-185,41217036,41220413 -5 + chr4 41220262 41220348 chr4,41220262,41220460,+,MIRb,SINE,MIR,53,250,-18,41220210,41220478 -2 + chr4 41221459 41221484 chr4,41221459,41221500,+,L2a,LINE,L2,3385,3425,-1,41218075,41221501 -2 + chr4 41253883 41253897 chr4,41253832,41253897,-,L1MB8,LINE,L1,-69,6115,6044,41253763,41259940 +5 - chr4 41253948 41254108 chr4,41253948,41254108,-,FRAM,SINE,Alu,-18,158,1,41253930,41254108 +6 - chr4 41688877 41688927 chr4,41688877,41689035,-,MIR3,SINE,MIR,-11,197,31,41688866,41689065 +2 - chr4 41755662 41755743 chr4,41755441,41755743,+,MLT1I,LTR,ERVL-MaLR,7,316,-95,41755435,41755838 +2 + chr4 41755747 41755778 chr4,41755747,41755958,-,L2c,LINE,L2,-219,3168,2960,41755528,41758917 -4 - chr4 41876512 41876558 chr4,41876512,41876558,+,(TTTG)n,Simple_repeat,Simple_repeat,1,44,0,41876512,41876558 -6 + chr4 41876726 41876980 chr4,41876726,41877007,-,AluSx,SINE,Alu,-10,302,8,41876716,41877014 +2 - chr4 41883316 41883360 chr4,41883316,41883360,+,(CAA)n,Simple_repeat,Simple_repeat,1,45,0,41883316,41883360 -6 + chr4 41989154 41989237 chr4,41989154,41989613,-,LTR106_Mam,LTR,LTR,-124,584,29,41989030,41989641 +1 - chr4 42283273 42283339 chr4,42283040,42283339,-,AluY,SINE,Alu,-10,301,1,42283030,42283339 +4 - chr4 42299077 42299133 chr4,42299077,42299133,+,GA-rich,Low_complexity,Low_complexity,1,57,0,42299077,42299133 -6 + chr4 42352504 42352578 chr4,42352243,42352578,+,MER44A,DNA,TcMar-Tigger,2,339,0,42352242,42352578 -5 + chr4 42352578 42352615 chr4,42352578,42352615,+,MER5A,DNA,hAT-Charlie,135,170,-19,42352444,42352634 -6 + chr4 42352634 42352896 chr4,42352634,42353064,+,MLT1J,LTR,ERVL-MaLR,27,505,-7,42352608,42353071 -2 + chr4 42706711 42707168 chr4,42706711,42707168,-,MLT1J,LTR,ERVL-MaLR,-25,487,5,42706686,42707172 -6 - chr4 43193287 43193392 chr4,43193098,43193475,+,THE1C,LTR,ERVL-MaLR,1,375,0,43193098,43193475 +3 + chr4 43340875 43340948 chr4,43340657,43341219,-,MLT1G,LTR,ERVL-MaLR,-2,589,8,43340655,43341226 -1 - chr4 43457683 43457770 chr4,43457683,43457906,-,LTR16A,LTR,ERVL,0,451,226,43457683,43458131 +2 - chr4 43458596 43458808 chr4,43458596,43458808,-,LTR16A,LTR,ERVL,-233,218,2,43458363,43458809 +6 - chr4 43492436 43492543 chr4,43492365,43492655,-,MLT1A0,LTR,ERVL-MaLR,-8,357,73,43492357,43492727 +1 - chr4 44017008 44017117 chr4,44017008,44017117,-,MER51A,LTR,ERV1,-472,162,1,44016536,44017117 -1 - chr4 44017118 44017370 chr4,44017118,44017675,+,Tigger3b,DNA,TcMar-Tigger,660,1231,0,44016459,44017675 +4 + chr4 44019751 44020057 chr4,44019350,44020057,+,HAL1,LINE,L1,1263,2008,-499,44018088,44020556 +2 + chr4 44020059 44020348 chr4,44020059,44020348,-,L1PA12,LINE,L1,0,6168,5907,44020059,44026254 -5 - chr4 44020348 44020590 chr4,44020348,44020590,-,AluSq10,SINE,Alu,-70,243,1,44020278,44020590 -6 - chr4 44020590 44020820 chr4,44020590,44020820,-,L1PA12,LINE,L1,-262,5906,5679,44020328,44026498 -6 - chr4 44020839 44020866 chr4,44020839,44020866,+,A-rich,Low_complexity,Low_complexity,1,27,0,44020839,44020866 +6 + chr4 44020933 44021118 chr4,44020933,44021118,+,HAL1,LINE,L1,2128,2310,-197,44018806,44021315 +6 + chr4 45014152 45014284 chr4,45014027,45014352,+,MLT1B,LTR,ERVL-MaLR,16,390,0,45014012,45014352 +3 + chr4 45028354 45028461 chr4,45028013,45028512,-,L2a,LINE,L2,0,3426,2911,45028013,45031422 -3 - chr4 45051490 45051524 chr4,45051212,45051524,+,L2,LINE,L2,2313,2636,-783,45048900,45052307 +2 + chr4 45051553 45051652 chr4,45051553,45054140,+,L1P1,LINE,L1,3,2585,-3561,45051551,45057701 +5 + chr4 47433154 47433223 chr4,47433154,47433223,+,MIRc,SINE,MIR,49,115,-153,47433106,47433376 +6 + chr4 47433210 47433262 chr4,47433210,47433262,+,L3,LINE,CR1,4049,4097,-2,47429162,47433264 +6 + chr4 47434436 47434545 chr4,47434436,47434545,+,MER94,DNA,hAT-Blackjack,7,134,0,47434430,47434545 +6 + chr4 47436273 47436584 chr4,47436273,47436584,+,AluJb,SINE,Alu,2,312,0,47436272,47436584 +6 + chr4 47436705 47436794 chr4,47436705,47436794,+,MamRTE1,LINE,RTE-BovB,3008,3105,-707,47433698,47437501 +6 + chr4 47840438 47840598 chr4,47840438,47840598,-,L2c,LINE,L2,-4,3383,3211,47840434,47843808 +6 - chr4 47841314 47841419 chr4,47841314,47841419,+,MIR,SINE,MIR,122,236,-26,47841193,47841445 -6 + chr4 47841453 47841568 chr4,47841453,47841568,-,MIR,SINE,MIR,-110,152,34,47841343,47841601 +6 - chr4 47841659 47841690 chr4,47841659,47841690,-,L2b,LINE,L2,-1,3374,3344,47841658,47845033 +6 - chr4 47841702 47841796 chr4,47841702,47841796,+,MLT1C,LTR,ERVL-MaLR,17,112,-355,47841686,47842151 -6 + chr4 47841795 47841904 chr4,47841795,47841904,+,MLT1C,LTR,ERVL-MaLR,357,466,-1,47841439,47841905 -6 + chr4 47841905 47842132 chr4,47841905,47842132,-,L2a,LINE,L2,-27,3399,3133,47841878,47845264 +6 - chr4 47843660 47844243 chr4,47843660,47844243,+,L2a,LINE,L2,2756,3426,0,47840905,47844243 -6 + chr4 47844250 47844289 chr4,47844250,47844289,+,MIRc,SINE,MIR,82,122,-146,47844169,47844435 -6 + chr4 48852121 48852225 chr4,48852121,48852396,-,L2c,LINE,L2,-1,3386,3111,48852120,48855506 +2 - chr4 49229573 49230574 chr4,49229008,49230574,-,MSTA-int,LTR,ERVL-MaLR,0,1631,24,49229008,49230597 -1 - chr4 49230570 49230701 chr4,49230570,49230701,+,THE1D-int,LTR,ERVL-MaLR,509,644,-987,49230062,49231688 +6 + chr4 49230735 49231025 chr4,49230735,49231025,-,MSTA,LTR,ERVL-MaLR,-52,376,76,49230683,49231100 -6 - chr4 49231029 49231255 chr4,49231029,49231255,+,THE1D-int,LTR,ERVL-MaLR,955,1223,-408,49230075,49231663 +6 + chr4 49231253 49231284 chr4,49231253,49231309,-,MSTA-int,LTR,ERVL-MaLR,-616,1015,959,49230637,49232267 -5 - chr4 52044805 52044847 chr4,52044792,52044847,+,(TTTCTTC)n,Simple_repeat,Simple_repeat,1,55,0,52044792,52044847 +1 + chr4 52044847 52045035 chr4,52044847,52045036,-,L2c,LINE,L2,-36,3351,3154,52044811,52048189 -4 - chr4 52046025 52046129 chr4,52045919,52046480,+,L4_C_Mam,LINE,RTE-X,4120,4774,-364,52041800,52046844 +3 + chr4 52659406 52659418 chr4,52659370,52659418,+,(GGCCGC)n,Simple_repeat,Simple_repeat,1,51,0,52659370,52659418 +1 + chr4 52660892 52660931 chr4,52660818,52660931,-,MIRc,SINE,MIR,-52,216,96,52660766,52661026 -2 - chr4 52685473 52685544 chr4,52685381,52685786,-,MSTB,LTR,ERVL-MaLR,-2,424,1,52685379,52685786 -3 - chr4 52691034 52691281 chr4,52690923,52691281,+,MER4D1,LTR,ERV1,327,686,-214,52690597,52691495 +2 + chr4 52691281 52691492 chr4,52691281,52691492,+,LTR39-int,LTR,ERV1,5274,5480,-3564,52686008,52695056 +6 + chr4 52691496 52692649 chr4,52691496,52692751,+,L1PA15,LINE,L1,905,2188,-4597,52690592,52697348 +5 + chr4 52713730 52713762 chr4,52713730,52713762,-,MIR,SINE,MIR,-71,191,155,52713659,52713916 -6 - chr4 52713762 52714137 chr4,52713762,52714175,+,LTR21A,LTR,ERV1,1,481,0,52713762,52714175 +5 + chr4 52714199 52714211 chr4,52714175,52714211,-,MIR,SINE,MIR,-108,154,120,52714067,52714330 -2 - chr4 52714633 52714761 chr4,52714633,52714761,+,MSTA,LTR,ERVL-MaLR,37,192,-236,52714597,52714997 +6 + chr4 52714766 52714882 chr4,52714766,52714890,+,AluJb,SINE,Alu,1,126,-186,52714766,52715076 +5 + chr4 52720322 52720351 chr4,52720322,52720639,-,AluJo,SINE,Alu,-8,304,1,52720314,52720639 -5 - chr4 52799579 52799672 chr4,52799575,52799696,+,MIRb,SINE,MIR,33,172,-96,52799543,52799792 +3 + chr4 52815153 52815185 chr4,52815081,52815185,-,L3b,LINE,CR1,-202,5030,4925,52814879,52820109 -2 - chr4 52815188 52815373 chr4,52815188,52815373,+,MLT2B1,LTR,ERVL,217,567,0,52814972,52815373 +6 + chr4 52815400 52815464 chr4,52815400,52815727,-,L1MC5,LINE,L1,-5,9299,8962,52815395,52824688 -5 - chr4 52948399 52948557 chr4,52948399,52948557,+,MIRc,SINE,MIR,76,254,-14,52948324,52948571 +6 + chr4 52950338 52950536 chr4,52950338,52950536,+,MamGypLTR2b,LTR,Gypsy,33,224,-698,52950306,52951234 +6 + chr4 52950907 52951022 chr4,52950907,52951080,+,MamGypLTR1c,LTR,Gypsy,632,803,0,52950276,52951080 +5 + chr4 52956338 52956669 chr4,52956338,52956669,-,MLT1K,LTR,ERVL-MaLR,0,595,259,52956338,52956927 -6 - chr4 53522990 53523101 chr4,53522986,53523101,+,MER5B,DNA,hAT-Charlie,1,122,-56,53522986,53523157 +2 + chr4 53549446 53549578 chr4,53549446,53549607,+,L1MC5,LINE,L1,8842,9066,-238,53540605,53549845 +5 + chr4 53593016 53593042 chr4,53593016,53593042,+,(AAC)n,Simple_repeat,Simple_repeat,1,27,0,53593016,53593042 +6 + chr4 53593845 53593929 chr4,53593746,53593929,-,MIR,SINE,MIR,-1,261,46,53593745,53593974 -2 - chr4 53603537 53603849 chr4,53603448,53603849,-,MSTA,LTR,ERVL-MaLR,0,428,2,53603448,53603850 -2 - chr4 53603849 53603942 chr4,53603849,53603942,-,MamRep1894,DNA,hAT,-33,90,15,53603816,53603956 -6 - chr4 53733248 53733497 chr4,53733248,53733497,+,L3,LINE,CR1,3836,4097,-2,53729413,53733499 +6 + chr4 53733695 53733738 chr4,53733695,53733738,+,A-rich,Low_complexity,Low_complexity,1,43,0,53733695,53733738 +6 + chr4 53733743 53733840 chr4,53733743,53733840,+,HAL1b,LINE,L1,1,97,-2324,53733743,53736164 +6 + chr4 53733948 53734102 chr4,53733948,53734102,+,HAL1b,LINE,L1,846,992,-1429,53733103,53735531 +6 + chr4 53734102 53734314 chr4,53734102,53734314,-,L1PA6,LINE,L1,-3,6151,5940,53734099,53740253 -6 - chr4 53734314 53734358 chr4,53734314,53734461,+,HAL1b,LINE,L1,993,1125,-1296,53733322,53735757 +5 + chr4 53736077 53736256 chr4,53736077,53736256,+,MLT1L,LTR,ERVL-MaLR,198,381,-229,53735880,53736485 +6 + chr4 53736493 53736569 chr4,53736493,53736569,+,HAL1b,LINE,L1,2333,2414,-7,53734161,53736576 +6 + chr4 53736730 53736826 chr4,53736730,53736826,-,MIRb,SINE,MIR,-44,224,131,53736686,53736956 -6 - chr4 53736936 53737156 chr4,53736936,53737156,-,Tigger3,DNA,TcMar-Tigger,-1,3028,2763,53736935,53739918 -5 - chr4 53907948 53908044 chr4,53907929,53908200,-,AluSx1,SINE,Alu,-39,273,1,53907890,53908200 -3 - chr4 53916219 53916267 chr4,53915782,53916267,+,L2a,LINE,L2,2919,3426,0,53912864,53916267 +2 + chr4 53916598 53916683 chr4,53916598,53916683,+,MIRc,SINE,MIR,37,122,-146,53916562,53916829 +6 + chr4 53916691 53916835 chr4,53916691,53916905,-,L2,LINE,L2,-756,2663,2454,53915935,53919358 -5 - chr4 53997542 53997575 chr4,53997542,53997575,+,A-rich,Low_complexity,Low_complexity,1,33,0,53997542,53997575 -6 + chr4 53997624 53997648 chr4,53997624,53997648,+,(CA)n,Simple_repeat,Simple_repeat,1,24,0,53997624,53997648 -6 + chr4 53997672 53997702 chr4,53997672,53997702,+,A-rich,Low_complexity,Low_complexity,1,31,0,53997672,53997702 -6 + chr4 54059782 54059895 chr4,54059782,54059895,-,L2c,LINE,L2,-1,3386,3276,54059781,54063170 -6 - chr4 54376002 54376034 chr4,54375970,54376193,+,LTR79,LTR,ERVL,186,410,-117,54375785,54376310 +1 + chr4 54603211 54603326 chr4,54602684,54603326,-,MER57-int,LTR,ERV1,-2405,2610,2167,54600279,54605492 +5 - chr4 54603303 54603358 chr4,54603303,54603358,-,MER57-int,LTR,ERV1,-3722,2224,2167,54599581,54605524 +6 - chr4 54603354 54603869 chr4,54603354,54603869,-,MER57-int,LTR,ERV1,-3929,2017,1371,54599425,54605239 +6 - chr4 54603859 54604596 chr4,54603859,54604596,-,MER57-int,LTR,ERV1,-4810,1136,288,54599049,54604883 +6 - chr4 54604593 54605177 chr4,54604593,54605178,-,MER57-int,LTR,ERV1,-6865,672,1,54597728,54605178 +2 - chr4 54836186 54836416 chr4,54836186,54836512,+,MLT1I,LTR,ERVL-MaLR,59,396,-15,54836128,54836527 -2 + chr4 54845117 54845261 chr4,54845117,54845261,+,L2b,LINE,L2,3235,3374,-1,54841883,54845262 -6 + chr4 54845369 54845402 chr4,54845369,54845433,+,MamRep4096,DNA,hAT-Tip100,350,413,-13,54845020,54845446 -1 + chr4 54858822 54859058 chr4,54858781,54859058,+,MLT1J,LTR,ERVL-MaLR,224,510,-2,54858558,54859060 +2 + chr4 55053060 55053097 chr4,55052892,55053276,-,MSTA,LTR,ERVL-MaLR,0,428,1,55052892,55053276 -1 - chr4 55092313 55092420 chr4,55092058,55092420,+,L2a,LINE,L2,3080,3414,-12,55088979,55092432 +2 + chr4 55364428 55364734 chr4,55364428,55364734,+,AluSz,SINE,Alu,1,301,-11,55364428,55364745 -6 + chr4 55369606 55369727 chr4,55369447,55369747,+,AluJb,SINE,Alu,1,299,-13,55369447,55369760 -3 + chr4 55374871 55374895 chr4,55374707,55374895,+,L2a,LINE,L2,1350,1622,-1797,55373358,55376692 -5 + chr4 55374907 55375032 chr4,55374907,55375032,-,AluJr,SINE,Alu,-180,132,1,55374727,55375032 +5 - chr4 55375040 55375188 chr4,55375040,55375371,-,LTR37A,LTR,ERV1,-18,408,77,55375022,55375447 +1 - chr4 55375532 55375619 chr4,55375445,55375619,+,L2a,LINE,L2,1599,1782,-1637,55373847,55377256 -4 + chr4 55375619 55375907 chr4,55375619,55375907,-,AluJb,SINE,Alu,-25,287,1,55375594,55375907 +6 - chr4 55375915 55375972 chr4,55375915,55376214,-,AluSp,SINE,Alu,-13,300,1,55375902,55376214 +1 - chr4 55377607 55377787 chr4,55376535,55377787,+,L2a,LINE,L2,1805,3137,-289,55374731,55378076 -5 + chr4 55377787 55377836 chr4,55377787,55378059,-,MLT1F2,LTR,ERVL-MaLR,0,560,303,55377787,55378361 +2 - chr4 55381725 55381893 chr4,55381509,55382969,+,MER45R,DNA,hAT-Tip100,27,1577,-4,55381483,55382973 -5 + chr4 55382507 55382679 chr4,55381509,55382969,+,MER45R,DNA,hAT-Tip100,27,1577,-4,55381483,55382973 -5 + chr4 55383292 55383450 chr4,55383157,55383465,+,AluSx4,SINE,Alu,2,309,-1,55383156,55383466 -1 + chr4 55383765 55383882 chr4,55383604,55383894,+,AluJb,SINE,Alu,1,287,-25,55383604,55383919 -1 + chr4 55386309 55386583 chr4,55386125,55386583,+,MLT1J,LTR,ERVL-MaLR,1,512,0,55386125,55386583 -1 + chr4 55386583 55386756 chr4,55386583,55386756,+,MER102b,DNA,hAT-Charlie,72,244,-97,55386512,55386853 -1 + chr4 55386891 55387472 chr4,55386891,55387472,+,MER61E,LTR,ERV1,1,566,-3,55386891,55387475 -5 + chr4 56387674 56387827 chr4,56387674,56387827,+,MIRc,SINE,MIR,32,207,-61,56387643,56387888 +6 + chr4 56387876 56387979 chr4,56387876,56387979,-,L2a,LINE,L2,-58,3368,3267,56387818,56391245 -6 - chr4 56464158 56464225 chr4,56463775,56464225,+,MLT2B1,LTR,ERVL,1,507,-13,56463775,56464238 +1 + chr4 56464232 56464395 chr4,56464232,56464395,-,L2c,LINE,L2,-30,3357,3182,56464202,56467576 -6 - chr4 56464463 56464579 chr4,56464463,56464668,+,L2a,LINE,L2,3200,3425,-1,56461264,56464669 +5 + chr4 56662469 56662776 chr4,56662457,56662776,-,AluSz,SINE,Alu,0,312,1,56662457,56662776 +5 - chr4 56663491 56663784 chr4,56663491,56663784,-,AluSx3,SINE,Alu,-18,293,1,56663473,56663784 +6 - chr4 56663990 56664122 chr4,56663990,56664122,+,MIRc,SINE,MIR,111,241,-27,56663880,56664149 -6 + chr4 56664133 56664435 chr4,56664133,56664435,-,AluSz6,SINE,Alu,-15,297,1,56664118,56664435 +6 - chr4 56664955 56665256 chr4,56664955,56665256,-,AluJo,SINE,Alu,-11,301,2,56664944,56665257 +6 - chr4 56665258 56665413 chr4,56665258,56665413,+,L2c,LINE,L2,3239,3378,-9,56662020,56665422 -6 + chr4 56665622 56665694 chr4,56665622,56665901,-,MIR,SINE,MIR,0,262,6,56665622,56665906 +1 - chr4 56961202 56961373 chr4,56961202,56961505,-,AluJo,SINE,Alu,-10,302,1,56961192,56961505 +1 - chr4 57109921 57109966 chr4,57109921,57109966,+,(CGCGGCT)n,Simple_repeat,Simple_repeat,1,46,0,57109921,57109966 +6 + chr4 57154577 57154639 chr4,57154183,57154639,+,LOR1b,LTR,ERV1,1,461,0,57154183,57154639 +1 + chr4 57154639 57154684 chr4,57154639,57154684,-,MER5A,DNA,hAT-Charlie,-147,42,1,57154492,57154684 -6 - chr4 57154696 57154741 chr4,57154696,57154827,-,MIR3,SINE,MIR,-54,154,20,57154642,57154846 -4 - chr4 57155015 57155028 chr4,57154976,57155028,-,MIR1_Amn,SINE,MIR,-154,76,23,57154822,57155050 -2 - chr4 57179145 57179284 chr4,57178987,57179424,-,MLT1J,LTR,ERVL-MaLR,-44,468,15,57178943,57179438 -1 - chr4 57188170 57188215 chr4,57187646,57188215,+,MER34B,LTR,ERV1,1,553,-12,57187646,57188227 +2 + chr4 57188215 57188319 chr4,57188215,57188319,+,L2c,LINE,L2,3127,3234,-153,57185089,57188472 +4 + chr4 57201624 57201820 chr4,57201624,57201921,-,LTR84b,LTR,ERVL,0,761,443,57201624,57202363 -4 - chr4 57205074 57205510 chr4,57205061,57205792,-,L4_A_Mam,LINE,RTE-X,-20,4970,4216,57205041,57210007 -5 - chr4 57425872 57426018 chr4,57425840,57426222,-,MLT2B4,LTR,ERVL,-3,559,1,57425837,57426222 -1 - chr4 57434742 57434842 chr4,57434669,57434842,-,MIR3,SINE,MIR,-3,205,30,57434666,57434871 -2 - chr4 57464225 57464372 chr4,57464044,57464454,+,MLT1J1,LTR,ERVL-MaLR,38,435,-9,57464007,57464463 +3 + chr4 57494554 57494839 chr4,57494524,57494839,-,AluSx1,SINE,Alu,0,312,1,57494524,57494839 -2 - chr4 57596128 57596375 chr4,57596128,57596375,-,MLT1A,LTR,ERVL-MaLR,-3,371,117,57596125,57596491 +6 - chr4 57596419 57596467 chr4,57596419,57597030,-,L2,LINE,L2,-1391,2028,1425,57595028,57598454 +2 - chr4 57605666 57605720 chr4,57605657,57605720,+,(TTTC)n,Simple_repeat,Simple_repeat,1,64,0,57605657,57605720 -5 + chr4 57625190 57625277 chr4,57619337,57625277,-,L1PA5,LINE,L1,-6,6148,134,57619331,57625410 +4 - chr4 57625282 57625312 chr4,57625282,57625327,+,Charlie1b,DNA,hAT-Charlie,465,509,-14,57624818,57625341 -2 + chr4 57722740 57722772 chr4,57722740,57722772,+,L2a,LINE,L2,3336,3367,-59,57719405,57722831 +6 + chr4 57722772 57722985 chr4,57722772,57722985,-,MER20,DNA,hAT-Charlie,0,219,3,57722772,57722987 -6 - chr4 57722985 57723037 chr4,57722985,57723037,+,L2a,LINE,L2,3368,3425,-1,57719618,57723038 +6 + chr4 57723271 57723400 chr4,57723271,57723400,+,MamTip2,DNA,hAT-Tip100,99,239,-66,57723173,57723466 +6 + chr4 58524515 58524824 chr4,58524458,58524864,-,MLT1J1,LTR,ERVL-MaLR,0,444,14,58524458,58524877 +5 - chr4 58529209 58529221 chr4,58528942,58529221,-,Charlie2b,DNA,hAT-Charlie,-2460,322,7,58526482,58529227 +4 - chr4 58536274 58536328 chr4,58535559,58536387,-,L1M1,LINE,L1,-6704,861,16,58528855,58536402 +1 - chr4 58563507 58563605 chr4,58563425,58563605,+,MER76,LTR,ERVL,1,176,-515,58563425,58564120 -4 + chr4 58563608 58563717 chr4,58563608,58563738,+,FLAM_C,SINE,Alu,1,130,-13,58563608,58563751 -2 + chr4 58565069 58565122 chr4,58564943,58565505,+,MLT2B3,LTR,ERVL,1,554,0,58564943,58565505 -1 + chr4 58780902 58781126 chr4,58780902,58781216,-,L1M3,LINE,L1,-2311,3829,3513,58778591,58784728 +2 - chr4 58784036 58784261 chr4,58783497,58784509,+,MER31-int,LTR,ERV1,15,1114,-3822,58783483,58788331 -3 + chr4 58850970 58851205 chr4,58849941,58851206,-,L1PA4,LINE,L1,-2468,3678,2413,58847473,58853618 +5 - chr4 58857625 58857748 chr4,58856538,58857882,-,L1PA7,LINE,L1,-917,5229,3891,58855621,58861772 +3 - chr4 58860512 58860608 chr4,58860512,58860611,-,AluSc,SINE,Alu,0,309,212,58860512,58860822 +2 - chr4 58977014 58977113 chr4,58977001,58977278,-,MLT1A0,LTR,ERVL-MaLR,-65,300,4,58976936,58977281 +1 - chr4 58987182 58987288 chr4,58986830,58987288,+,MER4C,LTR,ERV1,2,465,0,58986829,58987288 -5 + chr4 58987578 58987955 chr4,58987578,58990646,+,L1PA13,LINE,L1,1184,5062,-2519,58986395,58993165 -1 + chr4 58988104 58988160 chr4,58987578,58990646,+,L1PA13,LINE,L1,1184,5062,-2519,58986395,58993165 -1 + chr4 59013573 59013625 chr4,59011927,59013882,-,L1M1,LINE,L1,-836,6729,4765,59011091,59018646 -1 - chr4 59040659 59040691 chr4,59040659,59040804,+,L2a,LINE,L2,3274,3424,-2,59037386,59040806 +4 + chr4 59046423 59046683 chr4,59046180,59046683,+,MLT2B1,LTR,ERVL,1,520,0,59046180,59046683 +2 + chr4 59046683 59046718 chr4,59046683,59046718,-,MIRb,SINE,MIR,-215,53,19,59046468,59046736 -6 - chr4 59046836 59046891 chr4,59046836,59046891,+,(ATAATG)n,Simple_repeat,Simple_repeat,1,60,0,59046836,59046891 +6 + chr4 59047949 59048035 chr4,59047793,59048035,-,L3,LINE,CR1,-1270,2829,2592,59046523,59050626 +4 - chr4 59048034 59048135 chr4,59048034,59048220,+,MIRb,SINE,MIR,28,229,-39,59048007,59048259 -2 + chr4 59075180 59075256 chr4,59074899,59076513,-,Tigger2,DNA,TcMar-Tigger,0,2718,1131,59074899,59077643 +1 - chr4 59551142 59551254 chr4,59550979,59551279,+,AluSx1,SINE,Alu,1,302,-10,59550979,59551289 -5 + chr4 59561001 59561068 chr4,59558327,59561068,-,L1PA7,LINE,L1,-3831,2630,1,59554496,59561068 +4 - chr4 59564223 59564345 chr4,59564068,59564378,+,AluSc,SINE,Alu,2,309,0,59564067,59564378 -3 + chr4 59594420 59594479 chr4,59594223,59594562,-,MER102a,DNA,hAT-Charlie,-2031,397,31,59592192,59594592 +3 - chr4 59767816 59768115 chr4,59767775,59768115,-,AluSx1,SINE,Alu,0,312,1,59767775,59768115 +5 - chr4 59786554 59786666 chr4,59786472,59786888,-,MSTA,LTR,ERVL-MaLR,0,428,1,59786472,59786888 +3 - chr4 59787524 59787581 chr4,59787506,59787903,-,LTR16,LTR,ERVL,-2,436,38,59787504,59787940 +3 - chr4 60750617 60750772 chr4,60750617,60750772,+,MLT1H2,LTR,ERVL-MaLR,37,212,-277,60750581,60751049 +6 + chr4 60750821 60750865 chr4,60750821,60750978,+,MLT1H2,LTR,ERVL-MaLR,304,527,-22,60750518,60751000 +4 + chr4 60789815 60789999 chr4,60789622,60790115,+,MLT1H,LTR,ERVL-MaLR,18,541,-8,60789605,60790123 +5 + chr4 61144782 61144988 chr4,61144782,61145018,+,MIR,SINE,MIR,11,262,0,61144772,61145018 +4 + chr4 61153674 61153962 chr4,61153674,61153974,+,AluSp,SINE,Alu,1,301,-12,61153674,61153986 +5 + chr4 61420401 61420700 chr4,61420401,61420704,-,AluY,SINE,Alu,-7,304,2,61420394,61420705 +2 - chr4 61425312 61425437 chr4,61424342,61426149,-,HERVL18-int,LTR,ERVL,0,6047,4218,61424342,61430366 +3 - chr4 61426724 61428101 chr4,61426490,61428101,-,HERVL18-int,LTR,ERVL,-4346,1701,2,61422144,61428102 +4 - chr4 61428110 61428221 chr4,61428110,61428429,-,LTR18C,LTR,ERVL,-14,331,1,61428096,61428429 +1 - chr4 62071752 62071764 chr4,62071718,62071764,+,(TTTCTT)n,Simple_repeat,Simple_repeat,1,49,0,62071718,62071764 -5 + chr4 62127047 62127087 chr4,62126983,62127250,+,L1MA9,LINE,L1,20,253,-6777,62126964,62134027 -3 + chr4 62155942 62156041 chr4,62155783,62156089,+,AluSz6,SINE,Alu,1,312,0,62155783,62156089 -3 + chr4 62161747 62161863 chr4,62161514,62161959,+,MLT2A2,LTR,ERVL,1,453,0,62161514,62161959 -3 + chr4 62165514 62165554 chr4,62165481,62166601,+,HERVL-int,LTR,ERVL,4518,5654,0,62160964,62166601 -1 + chr4 63143044 63143063 chr4,63142275,63143378,-,L1MC5,LINE,L1,-70,9234,8069,63142205,63151446 -3 - chr4 63143256 63143378 chr4,63142275,63143378,-,L1MC5,LINE,L1,-70,9234,8069,63142205,63151446 -2 - chr4 63143423 63143881 chr4,63143423,63144183,+,L1MC5,LINE,L1,7223,7929,-1375,63136201,63145558 +5 + chr4 63473994 63474138 chr4,63473925,63475248,-,L1MEc,LINE,L1,-4453,1947,508,63469472,63475755 +3 - chr4 64914285 64915702 chr4,64914285,64915702,-,L1ME2z,LINE,L1,-2,6442,4901,64914283,64920602 +6 - chr4 64915715 64916125 chr4,64915715,64916125,-,MER77,LTR,ERVL,0,604,164,64915715,64916288 +6 - chr4 64916229 64916400 chr4,64916229,64916400,-,MER77,LTR,ERVL,-444,160,1,64915785,64916400 +6 - chr4 64916400 64916669 chr4,64916400,64916669,-,L1MEb,LINE,L1,-1258,4888,4646,64915142,64921314 +6 - chr4 64916704 64917542 chr4,64916704,64917542,-,L1MEb,LINE,L1,-5226,910,70,64911478,64917611 +6 - chr4 64937607 64937839 chr4,64937189,64937845,-,MER50B,LTR,ERV1,-29,668,3,64937160,64937847 +3 - chr4 64939273 64939365 chr4,64939236,64939624,-,MLT2A1,LTR,ERVL,-47,397,1,64939189,64939624 +3 - chr4 64939956 64939966 chr4,64939624,64939966,+,L1MB1,LINE,L1,5829,6168,0,64933796,64939966 -4 + chr4 65670312 65670353 chr4,65670312,65670353,+,(GCTGAGG)n,Simple_repeat,Simple_repeat,1,41,0,65670312,65670353 +6 + chr4 65693242 65693386 chr4,65693242,65693438,+,MLT1J2,LTR,ERVL-MaLR,240,448,0,65693003,65693438 +5 + chr4 65702202 65702263 chr4,65702057,65702263,+,L1MC5a,LINE,L1,2072,2279,-498,65699986,65702761 +1 + chr4 65858761 65858879 chr4,65858248,65859049,+,L1PA7,LINE,L1,5327,6131,-23,65852922,65859072 +1 + chr4 65859569 65859741 chr4,65859569,65859741,-,LTR78,LTR,ERV1,-424,880,701,65859145,65860441 -6 - chr4 65860064 65860184 chr4,65860064,65860184,+,(AT)n,Simple_repeat,Simple_repeat,1,121,0,65860064,65860184 +6 + chr4 65860184 65860204 chr4,65860184,65860213,+,(TG)n,Simple_repeat,Simple_repeat,1,29,0,65860184,65860213 +5 + chr4 65998846 65999302 chr4,65993299,65999302,-,L1PA2,LINE,L1,0,6155,125,65993299,65999426 -1 - chr4 66003281 66003362 chr4,66002796,66006138,-,L1MA5,LINE,L1,-27,7692,3322,66002769,66009459 -1 - chr4 66135388 66135466 chr4,66135341,66135485,+,L2a,LINE,L2,3261,3409,-17,66132081,66135502 +3 + chr4 66149874 66150012 chr4,66148639,66151835,+,LOR1-int,LTR,ERV1,2553,6064,-2056,66146087,66153891 +5 + chr4 67417305 67417330 chr4,67417268,67417330,-,L1MB8,LINE,L1,-1591,4555,4490,67415677,67421819 +5 - chr4 67417321 67418501 chr4,67417321,67418501,-,L1MB8,LINE,L1,-1605,4541,3356,67415716,67421856 +6 - chr4 67418501 67418714 chr4,67418501,67418714,-,Charlie1,DNA,hAT-Charlie,-1044,1737,1520,67417457,67420233 +5 - chr4 67419894 67419934 chr4,67419657,67419934,-,L2,LINE,L2,-615,2804,2498,67419042,67422431 +4 - chr4 67419934 67420049 chr4,67419934,67420245,+,AluY,SINE,Alu,1,307,-4,67419934,67420249 -2 + chr4 67420820 67420926 chr4,67420820,67420926,-,LTR67B,LTR,ERVL,-4,616,502,67420816,67421427 +6 - chr4 67421970 67422000 chr4,67421970,67422116,-,L2a,LINE,L2,-31,3395,3250,67421939,67425365 +1 - chr4 67468218 67468251 chr4,67467982,67468613,-,MER44D,DNA,TcMar-Tigger,0,705,10,67467982,67468622 +1 - chr4 67608221 67608800 chr4,67608221,67608800,+,L1ME3B,LINE,L1,802,1395,-4847,67607420,67613647 -6 + chr4 67608800 67609095 chr4,67608800,67609095,-,AluSp,SINE,Alu,-17,296,1,67608783,67609095 +6 - chr4 67609095 67609375 chr4,67609095,67609375,+,L1ME3B,LINE,L1,1384,1666,-5437,67607712,67614812 -6 + chr4 67609375 67609698 chr4,67609375,67609698,-,MLT1A0,LTR,ERVL-MaLR,0,365,3,67609375,67609700 +6 - chr4 67609698 67609823 chr4,67609698,67609823,+,L1ME3B,LINE,L1,1667,1821,-4421,67608032,67614244 -6 + chr4 67609887 67610255 chr4,67609887,67610255,-,MLT1G1,LTR,ERVL-MaLR,0,579,134,67609887,67610388 +6 - chr4 67610285 67610313 chr4,67610285,67610345,-,MLT1G1,LTR,ERVL-MaLR,-533,62,3,67609752,67610347 +1 - chr4 67721248 67721661 chr4,67721248,67721661,+,LTR58,LTR,ERV1,1,409,-270,67721248,67721931 +6 + chr4 67721661 67722290 chr4,67721661,67722290,-,MER41B,LTR,ERV1,0,634,1,67721661,67722290 -6 - chr4 67722290 67722505 chr4,67722290,67722558,+,LTR58,LTR,ERV1,410,673,-6,67721881,67722564 +5 + chr4 67728540 67728620 chr4,67728455,67728620,-,LTR84a,LTR,ERVL,-615,165,3,67727840,67728622 -2 - chr4 67728642 67728686 chr4,67728642,67729178,-,L2,LINE,L2,-540,2879,2341,67728102,67731518 -4 - chr4 67730074 67730170 chr4,67729869,67730216,+,MLT1A,LTR,ERVL-MaLR,4,346,-28,67729866,67730244 +3 + chr4 67731506 67731527 chr4,67730221,67731527,-,L1PA6,LINE,L1,0,6154,4846,67730221,67736372 -2 - chr4 67731525 67732107 chr4,67731525,67732107,+,L1PA6,LINE,L1,4260,4846,-1300,67727266,67733407 +6 + chr4 67732308 67732345 chr4,67732308,67732459,-,L2,LINE,L2,-1326,2093,1950,67730982,67734408 -4 - chr4 67753621 67753714 chr4,67753513,67753714,-,MIRb,SINE,MIR,-23,245,26,67753490,67753739 -2 - chr4 68080375 68080812 chr4,68080375,68080812,+,LTR16A1,LTR,ERVL,1,451,-5,68080375,68080817 +5 + chr4 68901044 68901375 chr4,68901044,68905036,-,HERV3-int,LTR,ERV1,-2203,6223,1046,68898841,68906081 +2 - chr4 68906875 68906983 chr4,68905745,68907106,-,HERV3-int,LTR,ERV1,-7039,1387,4,68898706,68907109 +1 - chr4 69195668 69195771 chr4,69195437,69196169,+,HERVK11-int,LTR,ERVK,5331,6075,-1878,69190107,69198047 +3 + chr4 69215122 69215783 chr4,69215122,69215783,-,L1MB8,LINE,L1,-11,6167,5492,69215111,69221274 -6 - chr4 71821305 71821500 chr4,71821200,71821796,-,MER50,LTR,ERV1,-140,594,1,71821060,71821796 +5 - chr4 71823087 71823140 chr4,71823033,71823140,+,MER5B,DNA,hAT-Charlie,1,130,-48,71823033,71823188 -4 + chr4 71823182 71823234 chr4,71823182,71823234,-,MER5B,DNA,hAT-Charlie,-118,60,3,71823064,71823236 +6 - chr4 71823922 71823980 chr4,71823922,71823988,-,L3b,LINE,CR1,-81,5151,5086,71823841,71829073 +1 - chr4 72330739 72330751 chr4,72330739,72330789,-,X7C_LINE,LINE,CR1,-180,56,8,72330559,72330796 -5 - chr4 73052362 73052420 chr4,73052357,73052420,+,(ATTTTT)n,Simple_repeat,Simple_repeat,1,64,0,73052357,73052420 -5 + chr4 73269824 73269953 chr4,73269720,73270285,-,L1MEc,LINE,L1,-1801,4518,3911,73267919,73274195 -3 - chr4 73302264 73302369 chr4,73302140,73302369,-,MIRb,SINE,MIR,-2,266,19,73302138,73302387 -2 - chr4 73302356 73302385 chr4,73302356,73302421,+,L2c,LINE,L2,3322,3426,0,73299035,73302421 +4 + chr4 73317827 73317953 chr4,73317711,73317976,-,L1M5,LINE,L1,-2197,3949,3673,73315514,73321648 -5 - chr4 73508803 73508887 chr4,73508567,73508887,-,AluJr4,SINE,Alu,-1,311,1,73508566,73508887 -1 - chr4 73508887 73509062 chr4,73508887,73509062,-,MIRb,SINE,MIR,-71,197,22,73508816,73509083 -6 - chr4 73509675 73509725 chr4,73509595,73509986,-,MLT1A0,LTR,ERVL-MaLR,0,465,1,73509595,73509986 -3 - chr4 73528564 73528722 chr4,73528564,73528723,+,MER5A1,DNA,hAT-Charlie,2,163,-3,73528563,73528726 +5 + chr4 73710339 73710395 chr4,73710339,73710546,-,MIR,SINE,MIR,-41,221,5,73710298,73710550 -4 - chr4 73713337 73713384 chr4,73713298,73713384,-,MIRb,SINE,MIR,-11,251,163,73713287,73713546 -2 - chr4 73714166 73714275 chr4,73714128,73714275,+,L2c,LINE,L2,3265,3399,-27,73710864,73714302 +2 + chr4 73714468 73714527 chr4,73714468,73714586,+,L2c,LINE,L2,3277,3379,-8,73711192,73714594 +5 + chr4 74156511 74157138 chr4,74156085,74157138,-,L1MC3,LINE,L1,-1628,6157,5040,74154457,74162177 +5 - chr4 74157138 74157374 chr4,74157138,74157374,-,LTR65,LTR,ERV1,-375,294,43,74156763,74157416 +6 - chr4 74158302 74158347 chr4,74158302,74158347,+,(GGTGGC)n,Simple_repeat,Simple_repeat,1,46,0,74158302,74158347 -6 + chr4 74440279 74440299 chr4,74439301,74440299,-,HERV4_I-int,LTR,ERV1,-5487,1052,3,74433814,74440301 +4 - chr4 74440301 74440457 chr4,74440301,74440731,-,MER51A,LTR,ERV1,0,634,1,74440301,74440731 +1 - chr4 74552584 74552832 chr4,74552577,74553139,-,MLT1L,LTR,ERVL-MaLR,0,610,1,74552577,74553139 +5 - chr4 74585013 74585105 chr4,74584908,74585132,+,MamGypLTR1a,LTR,Gypsy,6,235,-549,74584903,74585681 -3 + chr4 74588394 74588413 chr4,74588394,74588614,-,MER58A,DNA,hAT-Charlie,0,224,3,74588394,74588616 +2 - chr4 74589364 74589481 chr4,74589205,74589488,+,AluSz,SINE,Alu,1,280,-32,74589205,74589520 -1 + chr4 74956133 74956282 chr4,74956133,74956282,-,MIRc,SINE,MIR,-113,155,2,74956020,74956283 +6 - chr4 74957092 74957333 chr4,74957092,74957333,-,MIRb,SINE,MIR,-7,261,12,74957085,74957344 +6 - chr4 74957334 74957359 chr4,74957334,74957467,+,MIRb,SINE,MIR,115,262,-6,74957220,74957473 -2 + chr4 74967260 74967283 chr4,74967260,74967283,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,74967260,74967283 -6 + chr4 74993877 74993929 chr4,74993791,74993929,+,L1MA10,LINE,L1,6180,6320,-14,74987612,74993943 -5 + chr4 75081702 75081780 chr4,75081653,75081780,-,MIRb,SINE,MIR,-21,247,125,75081632,75081904 +5 - chr4 75082223 75082486 chr4,75082223,75082486,+,MIR,SINE,MIR,2,268,0,75082222,75082486 -6 + chr4 75084589 75084712 chr4,75084587,75084712,+,FLAM_A,SINE,Alu,2,123,-19,75084586,75084731 -4 + chr4 75269252 75269293 chr4,75269252,75269293,+,L1PA7,LINE,L1,725,765,-5696,75268528,75274989 -6 + chr4 75269286 75269495 chr4,75269286,75270581,+,L1PA7,LINE,L1,982,2298,-4201,75268305,75274782 -2 + chr4 75341279 75341312 chr4,75341199,75341376,+,MIRb,SINE,MIR,23,209,-59,75341177,75341435 -5 + chr4 75341462 75341637 chr4,75341382,75341698,+,MLT1H2,LTR,ERVL-MaLR,16,295,-194,75341367,75341892 -3 + chr4 75357981 75357997 chr4,75357844,75357997,+,MER58B,DNA,hAT-Charlie,183,338,-3,75357662,75358000 +2 + chr4 75358105 75358170 chr4,75358105,75358200,+,MIR,SINE,MIR,162,262,-6,75357944,75358206 +4 + chr4 75361142 75361182 chr4,75361030,75361190,+,ERVL-E-int,LTR,ERVL,3221,3390,-2324,75357810,75363514 -1 + chr4 75361724 75361948 chr4,75361304,75361948,+,ERVL-E-int,LTR,ERVL,3559,4308,-1449,75357746,75363397 +2 + chr4 75361304 75361347 chr4,75361304,75361948,+,ERVL-E-int,LTR,ERVL,3559,4308,-1449,75357746,75363397 -2 + chr4 75361950 75362301 chr4,75361950,75362301,+,ERVL-E-int,LTR,ERVL,4244,4617,-1050,75357707,75363351 +6 + chr4 75362301 75362566 chr4,75362301,75362742,-,Tigger2a,DNA,TcMar-Tigger,-1,433,1,75362300,75362742 -5 - chr4 75401195 75401292 chr4,75401194,75407226,+,L1PA2,LINE,L1,124,6155,0,75401071,75407226 +1 + chr4 75407895 75408012 chr4,75407672,75408094,+,MLT1I,LTR,ERVL-MaLR,1,411,0,75407672,75408094 +3 + chr4 75422579 75422767 chr4,75422256,75422767,-,MLT2B2,LTR,ERVL,0,515,1,75422256,75422767 -2 - chr4 75422945 75423023 chr4,75422945,75423181,+,MLT1L,LTR,ERVL-MaLR,153,394,-216,75422793,75423397 +5 + chr4 75434426 75434449 chr4,75434426,75434998,+,L1MD,LINE,L1,3518,4098,-2048,75430909,75437046 -1 + chr4 75830927 75831087 chr4,75830927,75831087,-,Tigger12,DNA,TcMar-Tigger,-547,187,22,75830380,75831108 -6 - chr4 75831091 75831359 chr4,75831091,75831359,-,Charlie16a,DNA,hAT-Charlie,-16,326,64,75831075,75831422 -6 - chr4 75831434 75831475 chr4,75831434,75831475,+,MLT1C,LTR,ERVL-MaLR,6,34,-433,75831429,75831908 +6 + chr4 75831475 75831771 chr4,75831475,75831771,+,AluSx1,SINE,Alu,2,297,-15,75831474,75831786 +6 + chr4 75831771 75831953 chr4,75831771,75831953,+,MLT1C,LTR,ERVL-MaLR,35,209,-258,75831737,75832211 +6 + chr4 75831953 75832390 chr4,75831953,75832390,+,MSTA1,LTR,ERVL-MaLR,1,463,-2,75831953,75832392 +6 + chr4 75832390 75832406 chr4,75832390,75832406,+,MLT1C,LTR,ERVL-MaLR,210,223,-244,75832181,75832650 +6 + chr4 75832406 75832702 chr4,75832406,75832702,+,AluSx,SINE,Alu,3,298,-14,75832404,75832716 +6 + chr4 75980790 75980925 chr4,75980506,75980925,-,LTR16A1,LTR,ERVL,0,456,3,75980506,75980927 -1 - chr4 75996106 75996381 chr4,75996072,75996381,-,AluSc5,SINE,Alu,0,309,1,75996072,75996381 -2 - chr4 76005073 76005344 chr4,76005044,76005344,-,AluSc,SINE,Alu,-9,300,1,76005035,76005344 -2 - chr4 76005459 76005942 chr4,76005459,76005956,+,L1ME4a,LINE,L1,5604,6107,-17,75999856,76005973 +5 + chr4 76644275 76644368 chr4,76644243,76644510,-,AluSp,SINE,Alu,-4,309,41,76644239,76644550 -5 - chr4 76758087 76758177 chr4,76758087,76758177,-,MIR3,SINE,MIR,-35,173,87,76758052,76758263 +6 - chr4 76758174 76758243 chr4,76758174,76758243,-,L2b,LINE,L2,-2,3373,3307,76758172,76761549 +6 - chr4 76758457 76758474 chr4,76758457,76758474,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,76758457,76758474 -1 + chr4 77394491 77394737 chr4,77392699,77399769,-,HERVK3-int,LTR,ERVK,-2,7200,1,77392697,77399769 +5 - chr4 77399593 77399769 chr4,77392699,77399769,-,HERVK3-int,LTR,ERVK,-2,7200,1,77392697,77399769 +5 - chr4 77399784 77399794 chr4,77399784,77400204,-,LTR3,LTR,ERVK,-9,423,1,77399775,77400204 +2 - chr4 78648393 78648475 chr4,78648373,78648500,-,AluSz6,SINE,Alu,-38,274,130,78648335,78648629 -3 - chr4 78662918 78663082 chr4,78662842,78663082,+,MLT1L,LTR,ERVL-MaLR,13,277,-333,78662830,78663415 +2 + chr4 78680761 78681060 chr4,78680661,78681060,-,MLT1J,LTR,ERVL-MaLR,-3,509,105,78680658,78681164 -5 - chr4 78681112 78681257 chr4,78681112,78681257,+,MamGypLTR1a,LTR,Gypsy,575,729,-53,78680538,78681310 +6 + chr4 78682415 78682699 chr4,78682415,78682725,+,AluJb,SINE,Alu,11,308,-4,78682405,78682729 +5 + chr4 78773685 78773732 chr4,78773685,78773732,+,(TATACAT)n,Simple_repeat,Simple_repeat,1,52,0,78773685,78773732 -6 + chr4 78773814 78774093 chr4,78773814,78774093,-,AluJb,SINE,Alu,-30,282,12,78773784,78774104 +6 - chr4 78774128 78774349 chr4,78774128,78774349,-,AluJr,SINE,Alu,-50,262,56,78774078,78774404 +6 - chr4 78774924 78775122 chr4,78774924,78775122,+,MER102c,DNA,hAT-Charlie,70,267,-64,78774855,78775186 -6 + chr4 78775191 78775213 chr4,78775191,78775213,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,78775191,78775213 -6 + chr4 78775318 78775541 chr4,78775318,78775541,+,MIRc,SINE,MIR,5,241,-27,78775314,78775568 -6 + chr4 78971775 78971876 chr4,78971775,78972175,-,L1MA7,LINE,L1,-5960,463,69,78965815,78972243 -4 - chr4 78973000 78973052 chr4,78972867,78973124,-,MIR,SINE,MIR,0,262,6,78972867,78973129 -3 - chr4 79086096 79086262 chr4,79086095,79086277,-,LTR79,LTR,ERVL,-231,296,116,79085864,79086392 -3 - chr4 79195834 79195932 chr4,79195638,79196015,+,THE1C,LTR,ERVL-MaLR,1,375,0,79195638,79196015 +1 + chr4 79227212 79227422 chr4,79227202,79227422,+,L1PA5,LINE,L1,5184,5403,-743,79222019,79228165 +2 + chr4 79227484 79227590 chr4,79227484,79227590,-,L2b,LINE,L2,-1226,2193,2086,79226258,79229675 -6 - chr4 79227595 79227956 chr4,79227595,79228043,-,L3,LINE,CR1,-426,3673,3198,79227169,79231240 -5 - chr4 79244684 79245532 chr4,79244642,79246390,+,SVA_B,Retroposon,SVA,40,1383,0,79244603,79246390 +5 + chr4 79258781 79259039 chr4,79257987,79259677,+,MER52A,LTR,ERV1,1,1748,-7,79257987,79259684 +1 + chr4 79299001 79299046 chr4,79298980,79299046,+,L2c,LINE,L2,3266,3330,-57,79295715,79299103 +2 + chr4 79299158 79299265 chr4,79299158,79299265,-,MIR3,SINE,MIR,-2,206,98,79299156,79299362 -6 - chr4 79492416 79492774 chr4,79491185,79492822,-,L1PBa,LINE,L1,-5096,1767,94,79486089,79492915 -1 - chr4 79493152 79493169 chr4,79493092,79493169,-,L1M6,LINE,L1,-4172,2324,2255,79488920,79495423 -2 - chr4 79493169 79493585 chr4,79493169,79493671,+,MLT2A2,LTR,ERVL,2,453,0,79493168,79493671 +4 + chr4 79575141 79575271 chr4,79575117,79575271,-,LTR79,LTR,ERVL,-30,497,343,79575087,79575613 -2 - chr4 79575304 79575477 chr4,79575304,79575477,+,LTR88b,LTR,Gypsy?,645,811,-26,79574660,79575503 +6 + chr4 79596542 79596599 chr4,79596373,79596881,+,LTR78,LTR,ERV1,772,1303,-1,79595602,79596882 +1 + chr4 79596902 79597021 chr4,79596902,79597021,-,L2,LINE,L2,-494,2925,2806,79596408,79599826 -6 - chr4 79663761 79663848 chr4,79663745,79663900,+,LTR33B,LTR,ERVL,47,200,-303,79663699,79664203 +1 + chr4 79667989 79668090 chr4,79667893,79668090,+,L1PBa,LINE,L1,2,200,-6663,79667892,79674753 +2 + chr4 79668090 79668127 chr4,79668090,79668627,+,L1PBa,LINE,L1,634,1163,-5700,79667457,79674327 +4 + chr4 79689988 79690076 chr4,79689772,79691148,-,L1PB3,LINE,L1,0,6154,4688,79689772,79695835 -3 - chr4 79696413 79696428 chr4,79691430,79696428,-,L1PBa,LINE,L1,-1444,5418,255,79689986,79696682 -2 - chr4 79696428 79696837 chr4,79696428,79696950,+,LTR7B,LTR,ERV1,1,464,0,79696428,79696950 +5 + chr4 79827471 79827603 chr4,79827343,79827787,+,MLT1D,LTR,ERVL-MaLR,62,502,-3,79827282,79827790 +1 + chr4 79861565 79861690 chr4,79861565,79861690,+,L3,LINE,CR1,420,546,-3553,79861146,79865243 +6 + chr4 79861908 79862026 chr4,79861908,79862026,+,L3,LINE,CR1,3775,3896,-203,79858134,79862229 +6 + chr4 79877615 79877770 chr4,79877443,79877806,+,MLT1B,LTR,ERVL-MaLR,28,379,-11,79877416,79877817 +5 + chr4 80189749 80189793 chr4,80189616,80189793,-,MIR,SINE,MIR,-19,243,35,80189597,80189827 +4 - chr4 81164940 81164959 chr4,81164812,81164959,+,X6B_LINE,LINE,CR1,898,1060,-12,81163915,81164971 +1 + chr4 81175444 81175479 chr4,81175364,81175479,-,MIRb,SINE,MIR,-33,229,97,81175331,81175575 -2 - chr4 81192180 81192246 chr4,81191718,81192404,+,L1ME3A,LINE,L1,5547,6263,-83,81186172,81192487 +3 + chr4 81193239 81193395 chr4,81193239,81193489,+,MIR,SINE,MIR,4,260,-2,81193236,81193491 +5 + chr4 81802827 81802889 chr4,81802827,81802951,-,L2b,LINE,L2,0,3375,3248,81802827,81806198 +2 - chr4 81894581 81894624 chr4,81893457,81895110,+,HAL1,LINE,L1,641,2218,-289,81892817,81895399 -3 + chr4 82044168 82044223 chr4,82044168,82044223,+,G-rich,Low_complexity,Low_complexity,1,56,0,82044168,82044223 -6 + chr4 82383734 82383799 chr4,82383720,82383799,+,LTR33C,LTR,ERVL,358,442,-187,82383363,82383986 +2 + chr4 82383849 82384027 chr4,82383849,82384058,+,LTR33C,LTR,ERVL,409,618,-11,82383441,82384069 +5 + chr4 82613113 82613384 chr4,82613067,82613645,-,MLT2B3,LTR,ERVL,0,554,1,82613067,82613645 +5 - chr4 82613872 82613986 chr4,82613820,82613986,-,MamRep605,LTR?,LTR?,-11,838,659,82613809,82614644 +4 - chr4 82621219 82621437 chr4,82621219,82621592,-,MLT1B,LTR,ERVL-MaLR,-3,387,1,82621216,82621592 +1 - chr4 82893077 82893364 chr4,82893077,82893364,-,AluJr,SINE,Alu,-22,290,5,82893055,82893368 +6 - chr4 82893580 82893708 chr4,82893580,82893708,+,Charlie29a,DNA,hAT-Charlie,560,695,-24,82893021,82893732 -6 + chr4 82893708 82894962 chr4,82893708,82894962,-,HSMAR2,DNA,TcMar-Mariner,0,1302,2,82893708,82894963 +5 - chr4 82894962 82894986 chr4,82894962,82894986,+,Charlie29a,DNA,hAT-Charlie,696,716,-3,82894267,82894989 -6 + chr4 82895200 82895462 chr4,82895200,82895462,+,AluSz6,SINE,Alu,2,275,-37,82895199,82895499 -6 + chr4 82897768 82897831 chr4,82897768,82897831,+,MIR,SINE,MIR,204,262,0,82897565,82897831 -5 + chr4 82900920 82900960 chr4,82900920,82901024,+,(GCGTG)n,Simple_repeat,Simple_repeat,1,108,0,82900920,82901024 -1 + chr4 83233527 83233650 chr4,83233527,83233650,-,AluSz6,SINE,Alu,-178,134,19,83233349,83233668 +6 - chr4 83238522 83238578 chr4,83238412,83238578,-,LTR82B,LTR,ERVL,-34,796,628,83238378,83239205 +4 - chr4 83668698 83668806 chr4,83668698,83668977,+,L2c,LINE,L2,3132,3387,0,83665567,83668977 -2 + chr4 83674702 83674817 chr4,83674690,83674836,+,AluSx,SINE,Alu,147,294,-18,83674544,83674854 -3 + chr4 83731538 83731755 chr4,83731487,83731945,+,MLT2B3,LTR,ERVL,101,554,0,83731387,83731945 -1 + chr4 83811489 83811625 chr4,83811393,83811625,-,ERV3-16A3_LTR,LTR,ERVL,-148,274,3,83811245,83811627 +4 - chr4 83968328 83968440 chr4,83968328,83968440,-,L2b,LINE,L2,-29,3346,3225,83968299,83971664 +6 - chr4 83968783 83968858 chr4,83968783,83968858,-,MARNA,DNA,TcMar-Mariner,-199,387,311,83968584,83969168 +6 - chr4 83968871 83969104 chr4,83968871,83969104,-,MARNA,DNA,TcMar-Mariner,-196,390,154,83968675,83969257 +6 - chr4 83969269 83969422 chr4,83969269,83969422,+,UCON40,Unknown,Unknown,62,221,-94,83969208,83969516 -6 + chr4 83969625 83969707 chr4,83969625,83969707,+,MIRb,SINE,MIR,25,105,-163,83969601,83969870 -6 + chr4 83969725 83969757 chr4,83969725,83969757,+,(TA)n,Simple_repeat,Simple_repeat,1,34,0,83969725,83969757 -6 + chr4 83969984 83970110 chr4,83969984,83970135,+,FAM,SINE,Alu,2,179,-6,83969983,83970141 -2 + chr4 84012055 84012065 chr4,84011300,84012065,+,L1ME2,LINE,L1,1497,2167,-4870,84009804,84016935 -4 + chr4 84284206 84284282 chr4,84284126,84284282,-,MIR3,SINE,MIR,-19,189,26,84284107,84284307 +4 - chr4 84286669 84286827 chr4,84285633,84288591,+,L1PA7,LINE,L1,2,2960,-3501,84285632,84292092 -3 + chr4 84293220 84293343 chr4,84293111,84293343,-,MIR,SINE,MIR,-27,241,5,84293084,84293347 +4 - chr4 84371393 84371440 chr4,84371108,84371440,+,L2c,LINE,L2,1889,2247,-1172,84369220,84372612 -5 + chr4 84371739 84371758 chr4,84371739,84371876,+,MIR,SINE,MIR,114,252,-10,84371626,84371886 -2 + chr4 84810355 84810391 chr4,84810355,84810403,+,GA-rich,Low_complexity,Low_complexity,1,48,0,84810355,84810403 +5 + chr4 84966793 84966819 chr4,84966782,84966819,+,(CCTTT)n,Simple_repeat,Simple_repeat,1,39,0,84966782,84966819 +1 + chr4 84966950 84967018 chr4,84966950,84967018,+,(CTCCT)n,Simple_repeat,Simple_repeat,1,69,0,84966950,84967018 +1 + chr4 85000705 85000765 chr4,85000705,85001051,+,Charlie7,DNA,hAT-Charlie,1,364,-2248,85000705,85003299 +4 + chr4 85004230 85004327 chr4,85004085,85004404,+,MLT1A1,LTR,ERVL-MaLR,61,406,-2,85004025,85004406 +3 + chr4 85005474 85005487 chr4,85005349,85005487,-,L1MC5a,LINE,L1,-4,2773,2629,85005345,85008115 -2 - chr4 85006007 85006302 chr4,85005923,85006302,-,MLT1J1,LTR,ERVL-MaLR,-33,378,1,85005890,85006302 -5 - chr4 85006377 85006497 chr4,85006377,85006497,+,L1MC,LINE,L1,5698,5820,-2062,85000680,85008559 +6 + chr4 85006506 85006638 chr4,85006506,85006638,+,FLAM_A,SINE,Alu,1,132,-10,85006506,85006648 +6 + chr4 85007040 85007213 chr4,85007040,85007213,+,L1ME4a,LINE,L1,5897,6108,-16,85001144,85007229 +6 + chr4 85008860 85009231 chr4,85008860,85009231,-,Helitron3Na_Mam,RC,Helitron,-12,474,93,85008848,85009323 -6 - chr4 85009231 85009847 chr4,85009231,85009847,+,LTR41C,LTR,ERVL,1,668,-33,85009231,85009880 +6 + chr4 85009938 85010122 chr4,85009938,85010122,-,Charlie22a,DNA,hAT-Charlie,-305,186,1,85009633,85010122 -6 - chr4 85010324 85010412 chr4,85010324,85010412,-,L2c,LINE,L2,-4,3383,3292,85010320,85013703 -6 - chr4 85010992 85011015 chr4,85010992,85011015,+,(TTG)n,Simple_repeat,Simple_repeat,1,23,0,85010992,85011015 +6 + chr4 86012831 86012865 chr4,86012831,86012865,+,(GTGCAT)n,Simple_repeat,Simple_repeat,1,34,0,86012831,86012865 -6 + chr4 86117912 86117962 chr4,86117503,86118131,+,LTR67B,LTR,ERVL,5,619,-1,86117499,86118132 +1 + chr4 86119714 86119883 chr4,86119648,86120061,+,LTR16A,LTR,ERVL,5,441,-10,86119644,86120071 +1 + chr4 86119984 86120061 chr4,86119648,86120061,+,LTR16A,LTR,ERVL,5,441,-10,86119644,86120071 +1 + chr4 86127592 86127699 chr4,86127524,86127699,-,Charlie16a,DNA,hAT-Charlie,-185,157,6,86127339,86127704 -5 - chr4 87345141 87345210 chr4,87344986,87345292,+,AluJo,SINE,Alu,5,306,-6,87344982,87345298 -1 + chr4 87568143 87568233 chr4,87568143,87568233,-,Charlie9,DNA,hAT-Charlie,-2663,94,3,87565480,87568235 +6 - chr4 87568267 87568314 chr4,87568267,87568314,+,MER5B,DNA,hAT-Charlie,3,49,-129,87568265,87568443 -6 + chr4 87568482 87568533 chr4,87568482,87568897,-,Arthur1,DNA,hAT-Tip100,-3,3944,3483,87568479,87572379 +2 - chr4 87658780 87658831 chr4,87658753,87658831,-,MER81,DNA,hAT-Blackjack,0,114,37,87658753,87658867 +4 - chr4 87672990 87673124 chr4,87672906,87673287,-,THE1B,LTR,ERVL-MaLR,0,364,1,87672906,87673287 +1 - chr4 87682998 87683304 chr4,87682948,87683512,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,87682948,87683512 +5 - chr4 87732340 87732370 chr4,87732340,87732804,+,MLT1C,LTR,ERVL-MaLR,1,466,-1,87732340,87732805 -1 + chr4 87733922 87733956 chr4,87733922,87734565,-,L2b,LINE,L2,-55,3320,2654,87733867,87737218 +1 - chr4 88311796 88311828 chr4,88310450,88311828,-,L1M1,LINE,L1,-2608,4957,3578,88307842,88315405 -2 - chr4 88311826 88311871 chr4,88311826,88311871,-,L1M1,LINE,L1,-6504,1061,1017,88305322,88312887 -4 - chr4 88316686 88316790 chr4,88316466,88316790,-,AluJo,SINE,Alu,-9,303,11,88316457,88316800 -2 - chr4 88330181 88330278 chr4,88330177,88330278,-,HY3,scRNA,scRNA,-1,100,1,88330176,88330278 -2 - chr4 88330278 88330534 chr4,88330278,88330534,-,L1ME4c,LINE,L1,-134,696,425,88330144,88330958 -6 - chr4 88330920 88331014 chr4,88330920,88331014,+,LTR33,LTR,ERVL,3,97,-418,88330918,88331432 +6 + chr4 88331043 88331366 chr4,88331043,88331366,+,LTR33,LTR,ERVL,171,501,-14,88330873,88331380 +6 + chr4 88709996 88710122 chr4,88709996,88710122,+,MER58C,DNA,hAT-Charlie,56,199,-16,88709941,88710138 +6 + chr4 88711855 88712017 chr4,88711575,88713104,-,L1MA4,LINE,L1,-5,7714,6164,88711570,88719267 -3 - chr4 88722229 88722368 chr4,88722229,88722368,-,MIRb,SINE,MIR,-10,258,86,88722219,88722453 -6 - chr4 88722515 88722655 chr4,88722515,88722655,+,MER5A1,DNA,hAT-Charlie,6,166,0,88722510,88722655 +6 + chr4 88728260 88728296 chr4,88728260,88728296,+,(GTGTGC)n,Simple_repeat,Simple_repeat,1,36,0,88728260,88728296 +6 + chr4 88729059 88729080 chr4,88729059,88729080,+,(T)n,Simple_repeat,Simple_repeat,1,21,0,88729059,88729080 +6 + chr4 88729215 88729356 chr4,88729215,88729356,-,MIRb,SINE,MIR,-20,248,101,88729195,88729456 -6 - chr4 89119299 89119510 chr4,89119299,89119510,-,L1MC3,LINE,L1,-180,7605,7403,89119119,89126912 -6 - chr4 89119604 89119654 chr4,89119604,89119654,+,MamRTE1,LINE,RTE-BovB,931,977,-2835,89118674,89122489 +6 + chr4 89119833 89119871 chr4,89119833,89120254,-,MER21A,LTR,ERVL,-42,896,406,89119791,89120659 -5 - chr4 89587821 89587940 chr4,89587473,89588147,+,MER20B,DNA,hAT-Charlie,35,752,-31,89587439,89588178 +1 + chr4 89627782 89627917 chr4,89627661,89628289,+,LTR48,LTR,ERV1,1,722,-65,89627661,89628354 +1 + chr4 89654604 89654661 chr4,89654604,89654709,-,MamSINE1,SINE,tRNA-RTE,-173,117,12,89654431,89654720 -5 - chr4 89660289 89660335 chr4,89660289,89660335,+,GA-rich,Low_complexity,Low_complexity,1,46,0,89660289,89660335 +6 + chr4 89681512 89681677 chr4,89681260,89681677,+,MER61C,LTR,ERV1,1,428,0,89681260,89681677 +1 + chr4 89685698 89685844 chr4,89685698,89685844,-,MLT1H,LTR,ERVL-MaLR,-14,535,374,89685684,89686217 -6 - chr4 89685886 89686102 chr4,89685886,89686102,-,MLT1H,LTR,ERVL-MaLR,-296,253,13,89685590,89686114 -6 - chr4 89692415 89692996 chr4,89691995,89692996,+,L1MA2,LINE,L1,5277,6304,0,89686719,89692996 +2 + chr4 89693316 89693464 chr4,89693316,89693464,+,HAL1ME,LINE,L1,2204,2359,-106,89691113,89693570 +6 + chr4 89693543 89693612 chr4,89693543,89693612,+,HAL1ME,LINE,L1,1024,1091,-1374,89692520,89694986 +6 + chr4 89719826 89720035 chr4,89718924,89720035,+,MamGypsy2-I,LTR,Gypsy,2877,4057,-109,89716048,89720144 +2 + chr4 89747802 89747853 chr4,89747792,89747886,+,L2b,LINE,L2,3272,3372,-3,89744521,89747889 +1 + chr4 89748438 89748575 chr4,89748438,89748575,+,MER5A,DNA,hAT-Charlie,43,175,-14,89748396,89748589 +6 + chr4 89749293 89749548 chr4,89749268,89749567,-,AluSq2,SINE,Alu,-9,304,1,89749259,89749567 -3 - chr4 89755799 89755853 chr4,89755765,89756077,-,AluSp,SINE,Alu,0,313,1,89755765,89756077 -5 - chr4 89838750 89838860 chr4,89838750,89838860,+,MIR3,SINE,MIR,46,167,-41,89838705,89838901 +6 + chr4 89838861 89839295 chr4,89838861,89839295,-,L1MC5,LINE,L1,-4,9300,9038,89838857,89848332 -6 - chr4 89839281 89839438 chr4,89839281,89839438,-,L1MC5,LINE,L1,-212,5966,5808,89839069,89845245 -6 - chr4 89839748 89839882 chr4,89839748,89839882,-,MIRb,SINE,MIR,-63,205,66,89839685,89839947 -6 - chr4 91325114 91325158 chr4,91325085,91325158,+,Zaphod2,DNA,hAT-Tip100,3457,3523,-1,91321629,91325159 -4 + chr4 91603704 91604041 chr4,91603704,91604041,-,MLT1A,LTR,ERVL-MaLR,-4,370,1,91603700,91604041 -6 - chr4 91604084 91604166 chr4,91604084,91604166,-,MIRb,SINE,MIR,-87,181,87,91603997,91604252 -6 - chr4 91888009 91888104 chr4,91888009,91888294,-,LTR67B,LTR,ERVL,-309,311,31,91887700,91888324 -4 - chr4 91888959 91889068 chr4,91888712,91889109,+,MLT2A1,LTR,ERVL,5,403,-41,91888708,91889150 +3 + chr4 92269265 92269356 chr4,92269265,92269420,+,MER5A1,DNA,hAT-Charlie,2,166,0,92269264,92269420 -2 + chr4 92277050 92277075 chr4,92276388,92277195,-,HERVH-int,LTR,ERV1,-6874,839,1,92269514,92277195 +1 - chr4 92297424 92297448 chr4,92297424,92297448,+,(CAA)n,Simple_repeat,Simple_repeat,1,24,0,92297424,92297448 -6 + chr4 92297529 92297629 chr4,92297529,92297749,+,MER103C,DNA,hAT-Charlie,80,296,-1,92297450,92297750 -2 + chr4 93318625 93318689 chr4,93318625,93318689,-,L1MB8,LINE,L1,0,6184,6118,93318625,93324806 +6 - chr4 93319599 93319786 chr4,93319491,93320042,+,MLT1E2,LTR,ERVL-MaLR,52,627,0,93319440,93320042 -1 + chr4 94117795 94117818 chr4,94117795,94117818,+,(T)n,Simple_repeat,Simple_repeat,1,23,0,94117795,94117818 -6 + chr4 94118781 94118876 chr4,94118774,94118876,+,MIR3,SINE,MIR,73,173,-35,94118702,94118911 -4 + chr4 94118876 94118911 chr4,94118876,94119030,-,MLT1H,LTR,ERVL-MaLR,0,549,388,94118876,94119417 +2 - chr4 94136024 94136159 chr4,94136002,94136189,+,FAM,SINE,Alu,1,184,-1,94136002,94136190 -3 + chr4 94163898 94163929 chr4,94163838,94164019,+,L1MC,LINE,L1,5562,5753,-2129,94158277,94166148 -3 + chr4 94675245 94675285 chr4,94675167,94675285,-,MER5A,DNA,hAT-Charlie,-63,126,8,94675104,94675292 -1 - chr4 94702450 94702532 chr4,94702407,94702532,-,AluJb,SINE,Alu,-15,297,174,94702392,94702705 -2 - chr4 94743800 94743984 chr4,94743745,94743984,-,MER124,DNA?,DNA?,-46,351,57,94743699,94744040 +5 - chr4 94754830 94754905 chr4,94754746,94755373,+,L2c,LINE,L2,2677,3379,-8,94752070,94755381 -3 + chr4 95549253 95549288 chr4,95549253,95549288,+,(GGGGGT)n,Simple_repeat,Simple_repeat,1,35,0,95549253,95549288 +6 + chr4 95549288 95549304 chr4,95549288,95549304,+,(GGAGGT)n,Simple_repeat,Simple_repeat,1,53,0,95549288,95549304 +6 + chr4 95550466 95550615 chr4,95550466,95550615,+,MIR3,SINE,MIR,41,201,-7,95550426,95550622 +6 + chr4 95550802 95551009 chr4,95550802,95551009,+,MIR,SINE,MIR,20,243,-25,95550783,95551034 +6 + chr4 95551055 95551228 chr4,95551055,95551228,+,MER3,DNA,hAT-Charlie,1,198,-11,95551055,95551239 +6 + chr4 95551289 95551325 chr4,95551289,95551325,+,(TTATAT)n,Simple_repeat,Simple_repeat,1,36,0,95551289,95551325 +6 + chr4 95551357 95551542 chr4,95551357,95551542,+,L2a,LINE,L2,3228,3416,-10,95548130,95551552 +6 + chr4 95552003 95552327 chr4,95552003,95552327,+,L2a,LINE,L2,3117,3426,0,95548887,95552327 +6 + chr4 96362875 96363006 chr4,96362875,96363006,+,MIRb,SINE,MIR,19,152,-116,96362857,96363122 +6 + chr4 96363011 96364218 chr4,96363011,96364218,+,L1MB7,LINE,L1,4858,6129,-55,96358154,96364273 +6 + chr4 96364218 96364452 chr4,96364218,96364514,+,AluYb8,SINE,Alu,24,318,0,96364195,96364514 +5 + chr4 96451492 96451561 chr4,96448694,96451672,-,L1PA14,LINE,L1,-3921,4234,3,96444773,96451674 -3 - chr4 96818490 96818612 chr4,96818490,96818612,-,L1ME3A,LINE,L1,-328,5866,5745,96818162,96824356 -6 - chr4 96818672 96818766 chr4,96818672,96818766,-,L1M5,LINE,L1,-549,5645,5565,96818123,96824330 -6 - chr4 96818768 96818864 chr4,96818768,96819153,+,MSTA,LTR,ERVL-MaLR,1,428,0,96818768,96819153 +5 + chr4 97120701 97120765 chr4,97120588,97121003,-,MSTC,LTR,ERVL-MaLR,0,428,2,97120588,97121004 -1 - chr4 97134998 97135059 chr4,97134998,97135439,-,L1MA9,LINE,L1,-37,6275,5832,97134961,97141270 -5 - chr4 97366926 97366988 chr4,97366483,97367057,+,MLT1E1A,LTR,ERVL-MaLR,3,678,-2,97366481,97367059 +1 + chr4 97385960 97386057 chr4,97385693,97386193,-,MLT1G3,LTR,ERVL-MaLR,0,579,10,97385693,97386202 +5 - chr4 97387816 97387902 chr4,97387816,97388053,+,L2c,LINE,L2,3140,3387,0,97384677,97388053 -2 + chr4 97439354 97439421 chr4,97439332,97439438,-,L1M6,LINE,L1,-5424,1072,966,97433908,97440403 -3 - chr4 97463545 97463592 chr4,97463436,97463749,-,AluSq2,SINE,Alu,0,313,1,97463436,97463749 -3 - chr4 97489774 97489812 chr4,97489710,97490050,+,LTR68,LTR,ERV1,408,739,-1,97489303,97490051 +3 + chr4 97489996 97490050 chr4,97489710,97490050,+,LTR68,LTR,ERV1,408,739,-1,97489303,97490051 +2 + chr4 97490132 97490164 chr4,97490132,97490188,+,L1ME3Cz,LINE,L1,674,729,-268,97489459,97490456 +5 + chr4 97633479 97633823 chr4,97633479,97639503,+,L1PA3,LINE,L1,124,6155,0,97633356,97639503 -1 + chr4 98251728 98252005 chr4,98251728,98252030,+,AluY,SINE,Alu,2,303,-8,98251727,98252038 -2 + chr4 98660475 98660850 chr4,98660475,98660850,-,L1MC1,LINE,L1,-67,6266,5895,98660408,98666744 -6 - chr4 98660846 98660902 chr4,98660846,98660902,+,L1MC1,LINE,L1,6274,6333,0,98654573,98660902 +6 + chr4 98661395 98661632 chr4,98661395,98661632,+,L1ME4c,LINE,L1,265,511,-319,98661131,98661951 +6 + chr4 98661643 98661993 chr4,98661643,98661993,+,L2c,LINE,L2,2992,3387,0,98658652,98661993 +6 + chr4 98662093 98662411 chr4,98662093,98662411,+,L1ME4c,LINE,L1,592,888,-4,98661502,98662415 +6 + chr4 98662753 98662966 chr4,98662753,98662966,+,Charlie30a,DNA,hAT-Charlie,211,419,-372,98662543,98663338 +6 + chr4 98663114 98663489 chr4,98663114,98663489,+,MLT1L,LTR,ERVL-MaLR,163,610,0,98662952,98663489 +6 + chr4 98986495 98986597 chr4,98986441,98986844,+,MLT1J2,LTR,ERVL-MaLR,1,448,0,98986441,98986844 +3 + chr4 99102389 99102633 chr4,99102389,99102633,+,LTR78B,LTR,ERV1,896,1181,-115,99101494,99102748 +6 + chr4 99133675 99133771 chr4,99133675,99133771,+,L1MA7,LINE,L1,5627,5741,-571,99128049,99134342 +6 + chr4 99154545 99154651 chr4,99154378,99154651,+,MER4-int,LTR,ERV1,4609,4828,-1848,99149770,99156499 +2 + chr4 99155053 99155555 chr4,99155053,99155555,+,MER4-int,LTR,ERV1,6121,6620,-56,99148933,99155611 +6 + chr4 99155617 99155660 chr4,99155617,99155660,+,MER4-int,LTR,ERV1,7111,7153,-52,99148507,99155712 +6 + chr4 99155623 99155696 chr4,99155623,99155696,+,HERVK14-int,LTR,ERVK,5808,5893,-203,99149816,99155899 +6 + chr4 99155697 99155774 chr4,99155697,99155774,+,MER41D,LTR,ERV1,1,77,-480,99155697,99156254 +6 + chr4 99155980 99156029 chr4,99155980,99156029,+,(AAT)n,Simple_repeat,Simple_repeat,1,51,0,99155980,99156029 +6 + chr4 99156114 99156438 chr4,99156114,99156438,+,LTR85c,LTR,Gypsy?,321,655,-168,99155794,99156606 +6 + chr4 99156799 99156866 chr4,99156799,99156866,+,(TCTA)n,Simple_repeat,Simple_repeat,1,68,0,99156799,99156866 +6 + chr4 99157498 99157579 chr4,99157498,99157699,-,MIRb,SINE,MIR,-8,260,29,99157490,99157727 -4 - chr4 99161784 99161904 chr4,99161649,99162085,+,MLT1F,LTR,ERVL-MaLR,72,546,-2,99161578,99162087 +1 + chr4 99188645 99188855 chr4,99187641,99189072,-,HERVK9-int,LTR,ERVK,-2,6019,4595,99187639,99193666 -3 - chr4 99254048 99254063 chr4,99254048,99254107,+,L2c,LINE,L2,1264,1326,-2093,99252785,99256200 +4 + chr4 99254374 99254428 chr4,99254107,99254428,-,MER2,DNA,TcMar-Tigger,0,345,2,99254107,99254429 -2 - chr4 99254428 99254439 chr4,99254428,99254612,+,L2c,LINE,L2,1327,1496,-1923,99253102,99256535 +4 + chr4 99263502 99263810 chr4,99263016,99264275,-,L1PA6,LINE,L1,-5195,1266,2,99257821,99264276 -5 - chr4 99274962 99275051 chr4,99274760,99275104,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,99274760,99275104 +5 + chr4 99278453 99278509 chr4,99278314,99278549,+,MIRb,SINE,MIR,3,245,-23,99278312,99278572 +3 + chr4 99300299 99300336 chr4,99300112,99300336,+,MLT1D,LTR,ERVL-MaLR,3,225,-280,99300110,99300616 +2 + chr4 99625882 99625913 chr4,99625686,99625979,-,AluY,SINE,Alu,-17,294,2,99625669,99625980 +1 - chr4 99844138 99844332 chr4,99844050,99844332,-,MER61A,LTR,ERV1,0,341,28,99844050,99844359 -1 - chr4 99966055 99966270 chr4,99966055,99966270,+,MIRc,SINE,MIR,2,263,-5,99966054,99966275 +6 + chr4 100195065 100195099 chr4,100195061,100195425,-,Charlie3,DNA,hAT-Charlie,0,339,1,100195061,100195425 -5 - chr4 100660321 100660524 chr4,100660321,100660524,+,L3b,LINE,CR1,3564,3728,-371,100656758,100660895 -6 + chr4 100660497 100660669 chr4,100660497,100660720,+,MIRb,SINE,MIR,6,233,-35,100660492,100660755 -2 + chr4 100674094 100674271 chr4,100674094,100674517,-,MLT1A,LTR,ERVL-MaLR,0,374,4,100674094,100674520 +2 - chr4 100778582 100779077 chr4,100777514,100779091,-,L1PA15-16,LINE,L1,-5590,1263,1,100771924,100779091 +5 - chr4 100814214 100814280 chr4,100814142,100814316,+,MLT1N2,LTR,ERVL-MaLR,355,547,-15,100813788,100814331 -1 + chr4 101977078 101977100 chr4,101977078,101977421,-,MLT1I,LTR,ERVL-MaLR,0,411,8,101977078,101977428 +2 - chr4 102032290 102032382 chr4,102032290,102032600,-,HAL1,LINE,L1,-1385,1122,813,102030905,102033412 +2 - chr4 102418602 102418639 chr4,102418460,102418639,-,L2c,LINE,L2,-230,3157,2980,102418230,102421618 +5 - chr4 102418697 102418988 chr4,102418697,102419017,-,MLT1J,LTR,ERVL-MaLR,-41,403,62,102418656,102419078 +5 - chr4 102419697 102419794 chr4,102419541,102419850,+,AluSc,SINE,Alu,1,309,0,102419541,102419850 -3 + chr4 102431062 102431290 chr4,102431062,102431374,+,AluY,SINE,Alu,1,305,-6,102431062,102431380 -1 + chr4 102843324 102843465 chr4,102843142,102843465,+,ERVL-E-int,LTR,ERVL,3062,3376,-2291,102840081,102845756 +2 + chr4 102843627 102844075 chr4,102843627,102844245,-,ERVL-E-int,LTR,ERVL,-2832,2835,2238,102840795,102846482 -5 - chr4 103256159 103256290 chr4,103250265,103256290,-,L1PA2,LINE,L1,0,6155,125,103250265,103256414 -1 - chr4 103425042 103425102 chr4,103424943,103425102,+,LTR81B,LTR,Gypsy,159,320,-1073,103424785,103426175 +1 + chr4 103438707 103438763 chr4,103438646,103438782,-,L1MA7,LINE,L1,-258,6033,5780,103438388,103444561 -3 - chr4 103453600 103453658 chr4,103453407,103453801,+,MLT1B,LTR,ERVL-MaLR,1,390,0,103453407,103453801 +5 + chr4 103551001 103551146 chr4,103551001,103551146,-,MLT1H2,LTR,ERVL-MaLR,-325,164,61,103550676,103551206 +6 - chr4 103552026 103552152 chr4,103551868,103552181,+,AluSx,SINE,Alu,1,308,-4,103551868,103552185 -3 + chr4 103558895 103559040 chr4,103556076,103559040,-,HERVH-int,LTR,ERV1,-4718,2995,1,103551358,103559040 +4 - chr4 103559040 103559127 chr4,103559040,103559474,-,LTR7Y,LTR,ERV1,0,472,1,103559040,103559474 +1 - chr4 103961616 103961678 chr4,103961433,103964239,-,L1MC1,LINE,L1,-6,6502,3670,103961427,103967908 -1 - chr4 103978407 103978523 chr4,103977802,103978627,+,HERV4_I-int,LTR,ERV1,5289,6537,-2,103972514,103978629 +3 + chr4 104036483 104036923 chr4,104036472,104037510,+,L1P1,LINE,L1,2906,3944,-2202,104033567,104039712 +5 + chr4 104230380 104230492 chr4,104230213,104230579,+,LTR41C,LTR,ERVL,279,684,-84,104229935,104230663 +1 + chr4 104233777 104233832 chr4,104233768,104233840,+,MIR3,SINE,MIR,34,103,-105,104233735,104233945 +1 + chr4 104331402 104331450 chr4,104331286,104331828,+,MLT2B4,LTR,ERVL,159,717,0,104331128,104331828 +3 + chr4 104335711 104335971 chr4,104335591,104335971,-,L1ME3,LINE,L1,-1088,5058,4672,104334503,104340642 -2 - chr4 104335985 104336033 chr4,104335985,104336078,+,MLT2B2,LTR,ERVL,469,560,-2,104335517,104336080 +5 + chr4 104556960 104557024 chr4,104556942,104557059,+,L2a,LINE,L2,3304,3426,0,104553639,104557059 +1 + chr4 104567542 104567734 chr4,104562130,104568630,-,L1PA7,LINE,L1,0,6339,2,104562130,104568631 -3 - chr4 104568663 104568779 chr4,104568630,104568779,-,AluSq2,SINE,Alu,0,313,160,104568630,104568938 -2 - chr4 104653874 104653921 chr4,104653593,104654147,+,L1MCa,LINE,L1,3973,4536,-1785,104649621,104655932 -5 + chr4 104659085 104659206 chr4,104659068,104659362,-,AluSc8,SINE,Alu,-17,294,1,104659051,104659362 -3 - chr4 104666897 104666946 chr4,104666760,104666946,-,MIR,SINE,MIR,-70,192,2,104666690,104666947 +4 - chr4 104666993 104667016 chr4,104666993,104667325,-,THE1B,LTR,ERVL-MaLR,0,364,1,104666993,104667325 +2 - chr4 104672639 104672748 chr4,104670629,104674211,-,L1PB1,LINE,L1,-1,6150,2539,104670628,104676749 -3 - chr4 104684501 104684599 chr4,104684462,104685169,-,L1MEh,LINE,L1,-533,1702,976,104683929,104686144 -3 - chr4 104696740 104697035 chr4,104696740,104697035,+,AluSx,SINE,Alu,3,294,-18,104696738,104697053 +6 + chr4 104746668 104746680 chr4,104746668,104746755,-,L2b,LINE,L2,-535,2884,2798,104746133,104749552 +2 - chr4 104907357 104907460 chr4,104907196,104907543,+,MLT1I,LTR,ERVL-MaLR,30,402,-9,104907167,104907552 +1 + chr4 104927995 104928112 chr4,104927837,104928116,+,AluJo,SINE,Alu,1,279,-33,104927837,104928149 -3 + chr4 104943524 104943645 chr4,104943124,104943667,+,MER74B,LTR,ERVL,1,548,-74,104943124,104943741 +3 + chr4 104966734 104966793 chr4,104966734,104966885,-,MIR3,SINE,MIR,-24,184,9,104966710,104966893 +1 - chr4 104969971 104970017 chr4,104969971,104970017,-,MER5B,DNA,hAT-Charlie,-6,172,127,104969965,104970143 -6 - chr4 105119869 105120000 chr4,105119519,105120046,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,105119519,105120046 +5 + chr4 105172416 105172578 chr4,105172159,105172596,-,Tigger2a,DNA,TcMar-Tigger,0,434,3,105172159,105172598 +3 - chr4 105177592 105177672 chr4,105176121,105177800,+,L1MC1,LINE,L1,4139,5836,-672,105171983,105178472 -3 + chr4 105177963 105178063 chr4,105177800,105178114,+,AluSz,SINE,Alu,1,309,-3,105177800,105178117 -1 + chr4 105540190 105540326 chr4,105539238,105540445,-,HSMAR2,DNA,TcMar-Mariner,-107,1195,1,105539131,105540445 +5 - chr4 105542581 105542709 chr4,105542581,105542824,+,MIRb,SINE,MIR,7,260,-8,105542575,105542832 -2 + chr4 105561591 105561640 chr4,105561547,105561640,+,L2a,LINE,L2,3074,3176,-250,105558474,105561890 +1 + chr4 105569904 105569994 chr4,105569881,105569994,-,MIRc,SINE,MIR,-110,158,37,105569771,105570030 -2 - chr4 105570052 105570238 chr4,105570052,105570279,+,MIRb,SINE,MIR,16,267,-1,105570037,105570280 +5 + chr4 105746245 105746385 chr4,105746037,105746385,-,Tigger2,DNA,TcMar-Tigger,0,2718,2342,105746037,105748726 +5 - chr4 105807184 105807282 chr4,105807107,105807997,-,L1MC4,LINE,L1,-32,8010,7117,105807075,105815113 +3 - chr4 105815145 105815248 chr4,105815109,105815248,-,MLT1G1,LTR,ERVL-MaLR,-11,568,426,105815098,105815673 +5 - chr4 105927132 105927161 chr4,105927132,105927161,+,(ATAC)n,Simple_repeat,Simple_repeat,1,30,0,105927132,105927161 -6 + chr4 106003663 106003774 chr4,106003663,106003774,-,OldhAT1,DNA,hAT-Ac,-817,2031,1915,106002846,106005688 +6 - chr4 106014188 106014312 chr4,106014031,106014478,-,MLT1D,LTR,ERVL-MaLR,-7,498,13,106014024,106014490 +3 - chr4 106018669 106018759 chr4,106018409,106018944,-,LTR88a,LTR,Gypsy?,-15,801,242,106018394,106019185 +3 - chr4 106020236 106020356 chr4,106020236,106020356,-,MIR3,SINE,MIR,-32,176,40,106020204,106020395 +6 - chr4 106020549 106020610 chr4,106020549,106020610,+,MER103C,DNA,hAT-Charlie,235,296,-1,106020315,106020611 -6 + chr4 106020705 106020898 chr4,106020705,106020898,-,MER53,DNA,hAT,0,193,1,106020705,106020898 +6 - chr4 106021068 106021217 chr4,106021068,106021217,+,MER20B,DNA,hAT-Charlie,40,215,-568,106021029,106021785 -6 + chr4 106021267 106021538 chr4,106021267,106021538,+,MER20B,DNA,hAT-Charlie,516,777,-6,106020752,106021544 -6 + chr4 106021616 106021668 chr4,106021616,106021668,-,MLT1J,LTR,ERVL-MaLR,0,512,464,106021616,106022131 +6 - chr4 106021668 106022366 chr4,106021668,106022366,+,MER72,LTR,ERV1,1,722,0,106021668,106022366 -6 + chr4 106022366 106022460 chr4,106022366,106022460,-,MLT1J,LTR,ERVL-MaLR,-49,463,375,106022317,106022834 +6 - chr4 106433624 106433754 chr4,106433555,106433776,-,L2c,LINE,L2,-226,3161,2965,106433329,106436740 -1 - chr4 106434656 106434701 chr4,106434656,106434732,+,AmnSINE2,SINE,tRNA-Deu,1,77,-281,106434656,106435013 +4 + chr4 107301489 107301667 chr4,107301036,107301667,-,L2c,LINE,L2,-62,3325,2618,107300974,107304284 -2 - chr4 107301673 107301870 chr4,107301673,107302146,-,Tigger1,DNA,TcMar-Tigger,0,2418,1933,107301673,107304078 -5 - chr4 107863938 107864071 chr4,107863938,107864071,-,L2b,LINE,L2,-3,3372,3229,107863935,107867299 +6 - chr4 107866908 107866994 chr4,107866864,107866994,-,MIR3,SINE,MIR,-69,139,20,107866795,107867013 +4 - chr4 107867006 107867139 chr4,107867006,107867139,-,Charlie15a,DNA,hAT-Charlie,-5,219,77,107867001,107867215 +6 - chr4 107867544 107867645 chr4,107867544,107867767,+,MIR,SINE,MIR,23,258,-4,107867522,107867771 -2 + chr4 107873980 107874024 chr4,107873904,107874024,-,Tigger20a,DNA,TcMar-Tigger,-691,282,147,107873213,107874170 +4 - chr4 107886667 107886826 chr4,107886506,107888941,-,MER4-int,LTR,ERV1,-742,5856,1863,107885764,107890803 +5 - chr4 107893092 107893148 chr4,107893092,107893148,-,MIRb,SINE,MIR,-52,216,161,107893040,107893308 +6 - chr4 107936487 107936573 chr4,107936255,107936654,+,MSTD,LTR,ERVL-MaLR,1,396,0,107936255,107936654 -3 + chr4 107937460 107937512 chr4,107937460,107937512,-,L1ME4a,LINE,L1,-120,6004,5953,107937340,107943464 +6 - chr4 107937512 107937804 chr4,107937512,107937804,-,AluYh3,SINE,Alu,-16,295,1,107937496,107937804 +6 - chr4 107937804 107938029 chr4,107937804,107938029,-,L1ME4a,LINE,L1,-172,5952,5734,107937632,107943762 +6 - chr4 107938880 107939121 chr4,107938880,107939177,+,AluSx,SINE,Alu,1,299,-13,107938880,107939190 -2 + chr4 107940121 107940384 chr4,107940068,107940384,-,AluJb,SINE,Alu,-1,311,2,107940067,107940385 +4 - chr4 107940386 107940507 chr4,107940386,107940507,-,MER58B,DNA,hAT-Charlie,-87,254,149,107940299,107940655 +6 - chr4 107940565 107940715 chr4,107940565,107940715,-,MER58B,DNA,hAT-Charlie,-178,163,2,107940387,107940716 +6 - chr4 107940774 107940960 chr4,107940774,107940960,+,L1MEd,LINE,L1,2025,2225,-4878,107938750,107945838 -6 + chr4 107941210 107941255 chr4,107941210,107941281,+,(ATATAT)n,Simple_repeat,Simple_repeat,1,72,0,107941210,107941281 -1 + chr4 108173644 108173691 chr4,108173644,108173691,+,(CT)n,Simple_repeat,Simple_repeat,1,47,0,108173644,108173691 +6 + chr4 108174224 108174405 chr4,108174224,108174405,+,MIRc,SINE,MIR,39,243,-25,108174186,108174430 +6 + chr4 108175372 108175682 chr4,108175372,108175682,-,AluSx1,SINE,Alu,-2,310,1,108175370,108175682 -6 - chr4 108256645 108256836 chr4,108256562,108256905,+,UCON28b,Unknown,Unknown,106,461,-107,108256457,108257012 +5 + chr4 108538190 108538394 chr4,108537757,108538394,+,L2b,LINE,L2,2770,3375,-12,108534988,108538406 -5 + chr4 108538394 108538698 chr4,108538394,108538698,+,AluSx1,SINE,Alu,2,303,-9,108538393,108538707 -6 + chr4 108538757 108539473 chr4,108538757,108539473,-,Kanga1a,DNA,TcMar-Tc2,-6,748,4,108538751,108539476 +6 - chr4 108539617 108539672 chr4,108539617,108539672,-,MIRb,SINE,MIR,-29,239,187,108539588,108539858 +6 - chr4 108540000 108540129 chr4,108540000,108540129,+,FLAM_A,SINE,Alu,1,131,-11,108540000,108540140 -6 + chr4 108540467 108540514 chr4,108540467,108540514,+,(TG)n,Simple_repeat,Simple_repeat,1,47,0,108540467,108540514 -6 + chr4 108541500 108541592 chr4,108541477,108541775,+,AluJb,SINE,Alu,1,296,-16,108541477,108541791 -3 + chr4 108542131 108542216 chr4,108542131,108542381,+,ORSL,DNA,hAT-Tip100,1,275,0,108542131,108542381 -2 + chr4 108556132 108556336 chr4,108556132,108556336,-,MSTD,LTR,ERVL-MaLR,-173,223,1,108555959,108556336 +6 - chr4 108590363 108590480 chr4,108590269,108590528,+,L2b,LINE,L2,3081,3375,0,108587189,108590528 -5 + chr4 108602713 108602845 chr4,108602652,108602852,-,L1MDa,LINE,L1,-4477,2156,1944,108598175,108604795 +3 - chr4 108608543 108608573 chr4,108608543,108608573,+,(TAT)n,Simple_repeat,Simple_repeat,1,31,0,108608543,108608573 -6 + chr4 108608575 108608650 chr4,108608575,108608664,+,MLT1N2,LTR,ERVL-MaLR,462,554,-8,108608114,108608672 -2 + chr4 109313343 109313403 chr4,109312806,109313403,+,LTR27D,LTR,ERV1,1,613,-2,109312806,109313405 +2 + chr4 109313410 109313441 chr4,109313410,109315398,+,MER52-int,LTR,ERV1,1,2330,-4761,109313410,109320159 +4 + chr4 109314577 109315398 chr4,109313410,109315398,+,MER52-int,LTR,ERV1,1,2330,-4761,109313410,109320159 +2 + chr4 109315387 109316135 chr4,109315387,109317353,+,MER52-int,LTR,ERV1,2744,4730,-2361,109312644,109319714 +5 + chr4 109357529 109357560 chr4,109357529,109357869,+,MamRep137,DNA,TcMar-Tigger,24,362,-148,109357506,109358017 -2 + chr4 109362752 109362786 chr4,109362676,109362919,+,MIR,SINE,MIR,2,260,-2,109362675,109362921 -3 + chr4 109382249 109382401 chr4,109382218,109382401,+,MER63A,DNA,hAT-Blackjack,25,210,0,109382194,109382401 -5 + chr4 109414258 109414433 chr4,109414064,109414650,-,LTR66,LTR,ERVL,0,610,1,109414064,109414650 +1 - chr4 109430063 109430082 chr4,109430063,109430082,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,109430063,109430082 -6 + chr4 109430157 109430239 chr4,109430157,109430239,+,L2c,LINE,L2,3295,3383,-4,109426863,109430243 -6 + chr4 109430421 109430705 chr4,109430421,109430705,+,AluSx,SINE,Alu,1,295,-17,109430421,109430722 -6 + chr4 109433778 109433789 chr4,109433778,109433789,+,(TCCC)n,Simple_repeat,Simple_repeat,1,58,0,109433778,109433789 -1 + chr4 109433789 109433817 chr4,109433789,109433836,+,(CCTCCCG)n,Simple_repeat,Simple_repeat,1,49,0,109433789,109433836 -1 + chr4 109692004 109692023 chr4,109691647,109692023,+,MLT1B,LTR,ERVL-MaLR,3,390,0,109691645,109692023 +1 + chr4 109692286 109692447 chr4,109692286,109692447,-,MIR,SINE,MIR,0,262,96,109692286,109692542 -6 - chr4 110512660 110512886 chr4,110512660,110512886,-,MIR,SINE,MIR,-4,264,5,110512656,110512890 +6 - chr4 110513031 110513169 chr4,110513031,110513169,-,MIRb,SINE,MIR,-58,210,63,110512973,110513231 +6 - chr4 110515697 110515869 chr4,110515697,110516073,-,MLT1A,LTR,ERVL-MaLR,0,374,1,110515697,110516073 +2 - chr4 110595513 110595808 chr4,110595500,110595995,-,MLT1F,LTR,ERVL-MaLR,-38,510,8,110595462,110596002 +5 - chr4 110604051 110604249 chr4,110604005,110604249,-,MLT1F1,LTR,ERVL-MaLR,0,569,308,110604005,110604556 +4 - chr4 111648479 111648666 chr4,111648445,111648666,-,AmnSINE2,SINE,tRNA-Deu,-54,304,80,111648391,111648745 -2 - chr4 111802801 111802883 chr4,111802558,111802920,-,THE1D,LTR,ERVL-MaLR,-1,380,1,111802557,111802920 -1 - chr4 111809571 111809694 chr4,111809281,111809889,+,MER77B,LTR,ERVL,1,696,-4,111809281,111809893 -1 + chr4 111826881 111827205 chr4,111826105,111827370,-,HSMAR1,DNA,TcMar-Mariner,0,1287,1,111826105,111827370 +5 - chr4 111837454 111837610 chr4,111837129,111838276,+,Tigger3b,DNA,TcMar-Tigger,1,1194,-37,111837129,111838313 +3 + chr4 111839806 111839886 chr4,111839806,111839973,+,MER63A,DNA,hAT-Blackjack,1,167,-43,111839806,111840016 +5 + chr4 112072565 112072698 chr4,112072482,112072869,-,THE1D,LTR,ERVL-MaLR,0,381,1,112072482,112072869 +1 - chr4 112229561 112229804 chr4,112229452,112229804,-,L1ME4a,LINE,L1,-2,6122,5736,112229450,112235539 +5 - chr4 112229805 112230028 chr4,112229805,112230028,-,L1ME4a,LINE,L1,-523,5601,5355,112229282,112235382 +6 - chr4 112230155 112230566 chr4,112230155,112230566,-,L1MD1,LINE,L1,0,6242,5751,112230155,112236316 +6 - chr4 112273069 112273095 chr4,112273069,112273095,+,(AAC)n,Simple_repeat,Simple_repeat,1,26,0,112273069,112273095 -6 + chr4 112273139 112273220 chr4,112273139,112273220,+,A-rich,Low_complexity,Low_complexity,1,86,0,112273139,112273220 -6 + chr4 112546785 112546881 chr4,112546476,112546936,+,MSTD,LTR,ERVL-MaLR,1,396,0,112546476,112546936 +5 + chr4 112646476 112646585 chr4,112646475,112646585,+,(TTATAA)n,Simple_repeat,Simple_repeat,1,113,0,112646475,112646585 -5 + chr4 112693210 112693410 chr4,112693210,112693410,+,AluJb,SINE,Alu,80,280,-32,112693131,112693442 -6 + chr4 112979590 112980517 chr4,112979012,112980517,-,MER52A,LTR,ERV1,0,1755,1,112979012,112980517 +5 - chr4 113034538 113034551 chr4,113034538,113034639,+,L2c,LINE,L2,3294,3383,-4,113031245,113034643 -1 + chr4 113071838 113071962 chr4,113071754,113072133,-,THE1C,LTR,ERVL-MaLR,0,375,1,113071754,113072133 +1 - chr4 113943463 113943503 chr4,113943463,113944200,-,L2a,LINE,L2,-5,3421,2595,113943458,113946794 -4 - chr4 113944128 113944200 chr4,113943463,113944200,-,L2a,LINE,L2,-5,3421,2595,113943458,113946794 -2 - chr4 116196636 116196737 chr4,116196636,116197290,-,L2,LINE,L2,-1800,1619,922,116194836,116198211 +2 - chr4 116489364 116489407 chr4,116489293,116489407,-,LTR43,LTR,ERV1,-2,763,654,116489291,116490060 +5 - chr4 116490079 116490151 chr4,116490079,116490193,+,MLT1J1,LTR,ERVL-MaLR,3,125,-319,116490077,116490512 -2 + chr4 116501668 116501752 chr4,116501668,116501752,+,(TCTT)n,Simple_repeat,Simple_repeat,1,85,0,116501668,116501752 -4 + chr4 116501752 116501762 chr4,116501752,116501766,+,(TCCT)n,Simple_repeat,Simple_repeat,4,17,0,116501749,116501766 -2 + chr4 116514457 116514533 chr4,116514457,116514719,-,MER41-int,LTR,ERV1,-1501,4445,4184,116512956,116518902 +2 - chr4 116515113 116515146 chr4,116514721,116516445,-,MER50-int,LTR,ERV1,-2667,4538,2788,116512054,116519232 +1 - chr4 117314610 117314683 chr4,117314610,117314683,+,MLT1I,LTR,ERVL-MaLR,334,406,-5,117314277,117314688 -6 + chr4 117315908 117316148 chr4,117315908,117316221,-,MLT1J,LTR,ERVL-MaLR,-15,497,183,117315893,117316403 +2 - chr4 117321312 117321363 chr4,117321034,117321441,+,MSTD,LTR,ERVL-MaLR,1,394,-2,117321034,117321443 -3 + chr4 117359790 117359809 chr4,117359790,117360030,+,Charlie9,DNA,hAT-Charlie,2679,2756,-1,117357112,117360031 -2 + chr4 117360625 117360809 chr4,117360517,117360864,-,MER50,LTR,ERV1,-379,355,1,117360138,117360864 -1 - chr4 117360564 117360639 chr4,117360517,117360864,-,MER50,LTR,ERV1,-379,355,1,117360138,117360864 +1 - chr4 117361349 117361374 chr4,117361130,117361374,+,MER50,LTR,ERV1,75,320,-414,117361056,117361788 +1 + chr4 117361389 117361506 chr4,117361389,117361577,+,MLT1E2,LTR,ERVL-MaLR,434,625,-2,117360956,117361579 +1 + chr4 117371592 117371662 chr4,117371406,117371849,-,L1M3c,LINE,L1,-5688,975,533,117365718,117372381 -3 - chr4 117428396 117428483 chr4,117428201,117430339,-,L1PA13,LINE,L1,-4538,2247,12,117423663,117430350 -1 - chr4 117428694 117428767 chr4,117428201,117430339,-,L1PA13,LINE,L1,-4538,2247,12,117423663,117430350 -1 - chr4 117464472 117464538 chr4,117464198,117464727,+,MER1A,DNA,hAT-Charlie,1,529,0,117464198,117464727 +3 + chr4 117468150 117468233 chr4,117467896,117468305,-,LTR16B,LTR,ERVL,-15,448,7,117467881,117468311 -3 - chr4 117540097 117540240 chr4,117540001,117540240,+,MER58C,DNA,hAT-Charlie,1,215,0,117540001,117540240 +2 + chr4 117571948 117572056 chr4,117571948,117572056,-,LTR67B,LTR,ERVL,-514,106,1,117571434,117572056 -6 - chr4 117690003 117690063 chr4,117690003,117690063,+,AluJo,SINE,Alu,244,302,-10,117689760,117690073 +6 + chr4 117834401 117834486 chr4,117832831,117835115,-,HUERS-P2-int,LTR,ERV1,-4233,2858,214,117828598,117835328 -1 - chr4 118617996 118618119 chr4,118617982,118618276,-,AluJr,SINE,Alu,-18,294,5,118617964,118618280 -3 - chr4 118628036 118628191 chr4,118628012,118628191,-,AluJb,SINE,Alu,-14,298,121,118627998,118628311 -2 - chr4 118628191 118628226 chr4,118628191,118628297,+,MER8,DNA,TcMar-Tigger,133,237,-2,118628059,118628299 +4 + chr4 118630289 118630346 chr4,118630008,118630428,+,MER1A,DNA,hAT-Charlie,1,439,-90,118630008,118630518 +3 + chr4 118631785 118631875 chr4,118631785,118631875,+,LTR41,LTR,ERVL,202,295,-473,118631584,118632348 +6 + chr4 119069324 119069339 chr4,119069314,119069339,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,119069314,119069339 -5 + chr4 119410149 119410233 chr4,119410149,119410569,-,MER1A,DNA,hAT-Charlie,-90,439,1,119410059,119410569 -5 - chr4 119456350 119456437 chr4,119456301,119456617,-,AluJb,SINE,Alu,-10,302,2,119456291,119456618 -1 - chr4 119456793 119456812 chr4,119456658,119456812,-,AluSc,SINE,Alu,-17,292,136,119456641,119456947 -2 - chr4 119456812 119456899 chr4,119456812,119456899,+,AluJb,SINE,Alu,210,296,-16,119456603,119456915 +6 + chr4 119799177 119799236 chr4,119799177,119799328,+,MIR,SINE,MIR,86,226,-42,119799092,119799370 -2 + chr4 119800684 119800726 chr4,119800684,119800726,+,(TTCCT)n,Simple_repeat,Simple_repeat,1,43,0,119800684,119800726 -6 + chr4 119801352 119801394 chr4,119801217,119801596,-,MSTA,LTR,ERVL-MaLR,0,428,1,119801217,119801596 +3 - chr4 119802724 119802800 chr4,119802379,119802800,+,LTR78B,LTR,ERV1,3,412,-884,119802377,119803684 -4 + chr4 119804465 119804515 chr4,119804465,119804582,-,HAL1,LINE,L1,-116,2391,2270,119804349,119806851 +1 - chr4 119939644 119939675 chr4,119939644,119939828,-,MIRb,SINE,MIR,-71,197,5,119939573,119939832 -4 - chr4 119964244 119964293 chr4,119964244,119964293,-,L1MA4,LINE,L1,-4,6296,6252,119964240,119970544 -5 - chr4 120040308 120040615 chr4,120039834,120040700,-,L1MD1,LINE,L1,0,6242,5350,120039834,120046049 +1 - chr4 120083862 120083962 chr4,120083862,120083962,+,(TTTAA)n,Simple_repeat,Simple_repeat,1,100,0,120083862,120083962 +6 + chr4 120084094 120084138 chr4,120084094,120084138,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,120084094,120084138 +6 + chr4 120084601 120085122 chr4,120084601,120085122,-,Charlie1a,DNA,hAT-Charlie,-20,1435,903,120084581,120086024 -6 - chr4 120165544 120165723 chr4,120165544,120165723,+,MIRc,SINE,MIR,2,193,-75,120165543,120165798 +6 + chr4 120165823 120165892 chr4,120165823,120165938,+,L1PB3,LINE,L1,5072,5193,-953,120160752,120166891 +5 + chr4 120328533 120328586 chr4,120328403,120328662,-,MIR,SINE,MIR,0,262,1,120328403,120328662 -3 - chr4 120393687 120393722 chr4,120393687,120393740,-,L2a,LINE,L2,-1,3425,3373,120393686,120397112 -5 - chr4 120416550 120416766 chr4,120416534,120418142,+,THE1C-int,LTR,ERVL-MaLR,3,1631,0,120416532,120418142 +5 + chr4 120650547 120650796 chr4,120650547,120652539,+,L1P1,LINE,L1,2557,4519,-1627,120647991,120654166 +5 + chr4 121073822 121073864 chr4,121073822,121075070,-,L2c,LINE,L2,-2,3385,1977,121073820,121077046 -4 - chr4 121080123 121080224 chr4,121080073,121080224,-,MIRb,SINE,MIR,-75,193,5,121079998,121080228 -2 - chr4 121765026 121765067 chr4,121765026,121765067,+,GA-rich,Low_complexity,Low_complexity,1,42,0,121765026,121765067 +6 + chr4 121765952 121766448 chr4,121765952,121766448,-,MLT1F,LTR,ERVL-MaLR,-9,539,1,121765943,121766448 -6 - chr4 121766615 121766814 chr4,121766615,121766833,+,MIRc,SINE,MIR,3,268,0,121766613,121766833 +5 + chr4 121870822 121870919 chr4,121870822,121870919,-,Charlie1a,DNA,hAT-Charlie,0,1455,1362,121870822,121872280 -6 - chr4 121870931 121871570 chr4,121870931,121871570,-,L1PB2,LINE,L1,0,6151,5467,121870931,121877036 -6 - chr4 121871570 121871839 chr4,121871570,121871839,-,AluSq2,SINE,Alu,0,313,45,121871570,121871883 -6 - chr4 121871839 121872702 chr4,121871839,121872702,-,L1PB2,LINE,L1,-685,5466,4558,121871154,121877259 -6 - chr4 121872702 121872848 chr4,121872702,121873022,-,Charlie1a,DNA,hAT-Charlie,-64,1391,931,121872638,121873952 -5 - chr4 122618983 122619086 chr4,122618868,122619086,-,MER20,DNA,hAT-Charlie,0,219,1,122618868,122619086 -1 - chr4 122624670 122624717 chr4,122624195,122624804,+,Tigger9b,DNA,TcMar-Tigger,1,624,0,122624195,122624804 +3 + chr4 122625286 122625397 chr4,122625286,122625397,+,MamRep1879,DNA,hAT-Tip100?,3,139,-77,122625284,122625474 +6 + chr4 122648101 122648228 chr4,122648043,122648234,-,MIRb,SINE,MIR,-40,228,12,122648003,122648245 -3 - chr4 122648728 122648774 chr4,122648438,122648774,-,MER2,DNA,TcMar-Tigger,0,345,2,122648438,122648775 -2 - chr4 122648774 122648788 chr4,122648774,122648788,+,(AATAT)n,Simple_repeat,Simple_repeat,3,15,0,122648772,122648788 +6 + chr4 122649624 122649711 chr4,122649623,122649748,-,MLT1F,LTR,ERVL-MaLR,-277,271,142,122649346,122649889 -3 - chr4 122689008 122689142 chr4,122689008,122689142,-,L3b,LINE,CR1,-50,5182,5046,122688958,122694187 -6 - chr4 122881878 122882178 chr4,122881821,122882178,-,THE1B,LTR,ERVL-MaLR,0,364,3,122881821,122882180 +5 - chr4 122882915 122882965 chr4,122882915,122882965,+,AmnSINE1,SINE,5S-Deu-L2,112,161,-414,122882804,122883379 -6 + chr4 122884369 122884536 chr4,122884211,122884536,+,AluSz,SINE,Alu,1,312,0,122884211,122884536 -4 + chr4 123490268 123490492 chr4,123490199,123490492,-,AluY,SINE,Alu,-18,293,1,123490181,123490492 -1 - chr4 123490492 123490512 chr4,123490492,123491072,-,L1MEd,LINE,L1,-2257,4064,3461,123488235,123494532 -4 - chr4 123496741 123496826 chr4,123496452,123496826,+,LTR16A,LTR,ERVL,3,451,0,123496450,123496826 +2 + chr4 123526363 123526450 chr4,123526055,123526450,-,L1ME3B,LINE,L1,-83,6159,5722,123525972,123532171 -2 - chr4 123661753 123662343 chr4,123661601,123662343,-,L1MC5,LINE,L1,-14,9290,8623,123661587,123670965 -2 - chr4 123662395 123662589 chr4,123662395,123662589,+,MER3,DNA,hAT-Charlie,1,196,-13,123662395,123662602 +6 + chr4 123662604 123663943 chr4,123662604,123663943,-,L1MC5,LINE,L1,-745,8559,7151,123661859,123671093 -6 - chr4 123663943 123664223 chr4,123663943,123664223,-,AluJr4,SINE,Alu,-21,291,2,123663922,123664224 -6 - chr4 123664223 123664293 chr4,123664223,123664293,-,L1MC5,LINE,L1,-2120,5762,5699,123662103,123669991 -6 - chr4 123664293 123664321 chr4,123664293,123664321,+,(AGC)n,Simple_repeat,Simple_repeat,1,28,0,123664293,123664321 +6 + chr4 123665424 123665471 chr4,123665424,123665471,+,(TATATTC)n,Simple_repeat,Simple_repeat,1,48,0,123665424,123665471 +6 + chr4 123665832 123666231 chr4,123665832,123666231,-,MER110A,LTR,ERV1,-14,477,84,123665818,123666314 -6 - chr4 123666245 123666406 chr4,123666245,123666406,-,MER110-int,LTR,ERV1,-308,4339,4177,123665937,123670582 -6 - chr4 123666406 123666737 chr4,123666406,123666737,-,MER1B,DNA,hAT-Charlie,0,339,4,123666406,123666740 -6 - chr4 123666737 123666832 chr4,123666737,123667787,-,MER110-int,LTR,ERV1,-469,4178,3122,123666268,123670908 -5 - chr4 123863995 123864122 chr4,123863995,123864122,-,MIRc,SINE,MIR,-129,139,12,123863866,123864133 -6 - chr4 123864717 123864801 chr4,123864717,123864801,+,L2a,LINE,L2,3334,3426,0,123861384,123864801 +6 + chr4 124149377 124149544 chr4,124149322,124149715,-,MLT1B,LTR,ERVL-MaLR,0,390,1,124149322,124149715 +5 - chr4 124500381 124500576 chr4,124500381,124500576,-,MER58A,DNA,hAT-Charlie,0,224,1,124500381,124500576 +6 - chr4 124504250 124504410 chr4,124503917,124504515,-,L3,LINE,CR1,-1,4098,3495,124503916,124508009 +3 - chr4 124522147 124522204 chr4,124522147,124522234,+,MIR1_Amn,SINE,MIR,103,210,-58,124522045,124522292 -2 + chr4 124540326 124540383 chr4,124538972,124540383,-,Charlie1a,DNA,hAT-Charlie,0,1455,1,124538972,124540383 +4 - chr4 124543667 124543710 chr4,124543586,124543743,-,MIR,SINE,MIR,-29,239,64,124543557,124543806 +3 - chr4 124556436 124556510 chr4,124555887,124556640,-,LTR50,LTR,ERVL,0,795,4,124555887,124556643 +3 - chr4 124558380 124558434 chr4,124558181,124558732,+,MER41A,LTR,ERV1,1,554,0,124558181,124558732 -1 + chr4 125676718 125676887 chr4,125676065,125676887,+,LTR1A1,LTR,ERV1,1,799,0,125676065,125676887 +1 + chr4 127043430 127043545 chr4,127043333,127043545,-,Tigger13a,DNA,TcMar-Tigger,-2,769,557,127043331,127044101 +5 - chr4 127043737 127043894 chr4,127043737,127043894,-,L1PBa,LINE,L1,-4440,2423,2251,127039297,127046144 +6 - chr4 127043894 127043934 chr4,127043894,127044037,+,L1PB,LINE,L1,3039,3192,-2954,127040856,127046991 -2 + chr4 127073776 127073890 chr4,127073731,127074444,-,MLT1H-int,LTR,ERVL-MaLR,-6,1403,642,127073725,127075085 +3 - chr4 127077735 127077762 chr4,127075277,127077793,-,L1P3,LINE,L1,-3964,2535,9,127071313,127077801 +1 - chr4 127096891 127096905 chr4,127096870,127096905,+,(ATTTT)n,Simple_repeat,Simple_repeat,1,35,0,127096870,127096905 -5 + chr4 127097019 127097080 chr4,127097019,127097080,+,GA-rich,Low_complexity,Low_complexity,1,62,0,127097019,127097080 -6 + chr4 127097209 127097259 chr4,127097209,127097289,-,X9_LINE,LINE,L1,-36,900,812,127097173,127098100 +2 - chr4 127106635 127106771 chr4,127105865,127111847,+,L1PA13,LINE,L1,641,7594,-4,127105225,127111851 -1 + chr4 127194379 127194493 chr4,127194303,127194703,-,MLT1A,LTR,ERVL-MaLR,0,390,1,127194303,127194703 +3 - chr4 127401726 127401760 chr4,127401573,127402004,+,MLT2B1,LTR,ERVL,1,457,-63,127401573,127402067 -5 + chr4 127411307 127411434 chr4,127410987,127411442,+,MLT2B1,LTR,ERVL,1,456,-64,127410987,127411506 -3 + chr4 127457602 127457672 chr4,127457582,127457712,+,FLAM_A,SINE,Alu,1,128,-14,127457582,127457726 -3 + chr4 127840198 127840238 chr4,127839968,127840238,+,AluSx,SINE,Alu,35,300,-12,127839934,127840250 -5 + chr4 127841730 127841768 chr4,127841730,127841768,+,Alu,SINE,Alu,5,42,-91,127841726,127841859 -6 + chr4 127841772 127841971 chr4,127841772,127841971,+,AluSx3,SINE,Alu,5,198,-113,127841768,127842084 -6 + chr4 127841971 127841991 chr4,127841971,127841991,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,127841971,127841991 -6 + chr4 127842277 127842424 chr4,127842277,127842424,+,AluJb,SINE,Alu,1,149,-163,127842277,127842587 -6 + chr4 127842431 127842583 chr4,127842431,127842583,+,L1M5,LINE,L1,2600,2755,-3391,127839832,127845974 -6 + chr4 127842661 127842856 chr4,127842661,127842856,+,L1MA4A,LINE,L1,6093,6281,-22,127836569,127842878 -6 + chr4 127843016 127843218 chr4,127843016,127843218,+,L2a,LINE,L2,3202,3425,-1,127839815,127843219 -6 + chr4 127843395 127844040 chr4,127843395,127845016,+,L1PA17,LINE,L1,102,1326,-5593,127843294,127850609 -1 + chr4 128302962 128303035 chr4,128302916,128303129,-,MIRc,SINE,MIR,-27,241,14,128302889,128303142 -3 - chr4 128428070 128428298 chr4,128427836,128428417,+,LTR41,LTR,ERVL,10,650,-118,128427827,128428535 +1 + chr4 128460327 128460379 chr4,128460258,128460451,-,MIRb,SINE,MIR,-61,207,9,128460197,128460459 -3 - chr4 128470506 128470647 chr4,128470506,128470799,-,MER46C,DNA,TcMar-Tigger,-34,304,3,128470472,128470801 -5 - chr4 128511411 128511645 chr4,128511328,128511853,+,MLT1H1,LTR,ERVL-MaLR,3,548,-7,128511326,128511860 +3 + chr4 128518756 128519094 chr4,128518568,128519094,-,LTR81,LTR,Gypsy,-14,1175,595,128518554,128519688 -2 - chr4 128519164 128519225 chr4,128519164,128519225,-,MLT1H2,LTR,ERVL-MaLR,-16,533,480,128519148,128519704 -6 - chr4 128519225 128519394 chr4,128519225,128519551,-,MER58B,DNA,hAT-Charlie,0,341,1,128519225,128519551 -5 - chr4 128567972 128568339 chr4,128567887,128568339,-,MLT1D,LTR,ERVL-MaLR,0,505,5,128567887,128568343 +5 - chr4 128568339 128568514 chr4,128568339,128568514,-,MIRb,SINE,MIR,-67,201,11,128568272,128568524 +6 - chr4 128568542 128568715 chr4,128568542,128568715,-,MIRb,SINE,MIR,-8,260,77,128568534,128568791 +6 - chr4 128569104 128569284 chr4,128569104,128569284,-,MIRc,SINE,MIR,-62,206,11,128569042,128569294 +6 - chr4 128570225 128570531 chr4,128570223,128570703,+,LTR16D,LTR,ERVL,155,631,-20,128570069,128570723 -1 + chr4 128583014 128583308 chr4,128583014,128583308,-,AluSx,SINE,Alu,-17,295,2,128582997,128583309 +6 - chr4 128599470 128599546 chr4,128599470,128599563,+,L2b,LINE,L2,3248,3344,-31,128596223,128599594 -2 + chr4 128601313 128601407 chr4,128601303,128601662,-,MamRTE1,LINE,RTE-BovB,-331,3481,3113,128600972,128604774 +1 - chr4 129299252 129299315 chr4,129299252,129299315,-,MIRb,SINE,MIR,-92,176,113,129299160,129299427 +6 - chr4 129304908 129305022 chr4,129302882,129306900,-,L1M1,LINE,L1,-3393,4172,16,129299489,129306915 +1 - chr4 129724812 129725211 chr4,129724812,129725211,-,MER57B1,LTR,ERV1,0,401,1,129724812,129725211 +6 - chr4 129725641 129725762 chr4,129725641,129725762,-,UCON55,DNA,TcMar-Tigger,-4,188,63,129725637,129725824 +6 - chr4 129726922 129727033 chr4,129726742,129727233,-,MLT1D,LTR,ERVL-MaLR,-4,501,2,129726738,129727234 +3 - chr4 129744308 129744358 chr4,129744067,129744358,-,AluSc,SINE,Alu,-18,291,1,129744049,129744358 +4 - chr4 129744358 129744379 chr4,129744358,129744382,+,Charlie25,DNA,hAT-Charlie,902,925,-1599,129743457,129745981 -2 + chr4 129748364 129748457 chr4,129748364,129748955,-,MamRep1527,LTR,LTR,-324,645,35,129748040,129748989 +2 - chr4 129748804 129748904 chr4,129748364,129748955,-,MamRep1527,LTR,LTR,-324,645,35,129748040,129748989 +3 - chr4 129749136 129749267 chr4,129748962,129749434,-,MLT1K,LTR,ERVL-MaLR,0,595,139,129748962,129749572 +3 - chr4 129771659 129771679 chr4,129771157,129771679,-,MLT1F,LTR,ERVL-MaLR,-29,519,1,129771128,129771679 -1 - chr4 129771412 129771481 chr4,129771157,129771679,-,MLT1F,LTR,ERVL-MaLR,-29,519,1,129771128,129771679 +1 - chr4 129791585 129791660 chr4,129791121,129791697,-,LTR80A,LTR,ERVL,-13,570,12,129791108,129791708 -5 - chr4 129802992 129803115 chr4,129802958,129803240,-,AluJr,SINE,Alu,-1,311,41,129802957,129803280 -3 - chr4 129807004 129807143 chr4,129806960,129807143,-,L2c,LINE,L2,-1,3386,3206,129806959,129810348 -2 - chr4 129812002 129812048 chr4,129811947,129812048,-,LTR33,LTR,ERVL,-300,215,109,129811647,129812156 -2 - chr4 129813674 129813785 chr4,129813590,129813970,-,MSTB1,LTR,ERVL-MaLR,0,432,39,129813590,129814008 -3 - chr4 129834218 129834324 chr4,129834218,129834535,+,L2b,LINE,L2,2189,2513,-906,129832030,129835441 +4 + chr4 129837361 129837425 chr4,129837319,129837568,-,MamGypLTR3,LTR,Gypsy,-624,357,107,129836695,129837674 -1 - chr4 129900538 129900654 chr4,129900457,129901613,+,MER83B-int,LTR,ERV1,4,1825,-7094,129900454,129908707 +3 + chr4 129928568 129928682 chr4,129928365,129928682,-,AluSx,SINE,Alu,0,312,1,129928365,129928682 -2 - chr4 129928682 129928716 chr4,129928682,129929049,+,Tigger7,DNA,TcMar-Tigger,409,767,-1724,129928274,129930773 +5 + chr4 129954378 129954576 chr4,129953739,129954790,+,L2c,LINE,L2,2262,3361,-65,129951478,129954855 +3 + chr4 130376229 130376464 chr4,130376108,130376464,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,130376108,130376464 +1 + chr4 130376464 130376540 chr4,130376464,130376540,-,MER31-int,LTR,ERV1,-4495,441,367,130371969,130376906 -6 - chr4 130386073 130386090 chr4,130385994,130386090,-,MLT1G3,LTR,ERVL-MaLR,0,595,490,130385994,130386579 -2 - chr4 130386141 130386251 chr4,130386141,130386251,+,FLAM_A,SINE,Alu,22,132,-10,130386120,130386261 +6 + chr4 130386246 130386371 chr4,130386246,130386744,-,MER67D,LTR,ERV1,-31,483,1,130386215,130386744 -5 - chr4 130808993 130809052 chr4,130808993,130809052,+,(TTAAT)n,Simple_repeat,Simple_repeat,1,59,0,130808993,130809052 +6 + chr4 130810640 130810918 chr4,130810640,130810918,+,AluJb,SINE,Alu,15,292,-20,130810626,130810938 +6 + chr4 130885529 130885615 chr4,130885387,130885615,-,MER65-int,LTR,ERV1,-4233,2406,2248,130881154,130887862 +4 - chr4 131380013 131380341 chr4,131379190,131380342,+,LTR12D,LTR,ERV1,1,1249,-5,131379190,131380347 +1 + chr4 131485957 131486074 chr4,131485310,131486412,-,L1MDa,LINE,L1,-1356,5181,4139,131483954,131490550 -1 - chr4 131522920 131522939 chr4,131522579,131522939,-,L1MA1,LINE,L1,-6827,382,1,131515752,131522939 -2 - chr4 131527230 131527288 chr4,131526974,131527293,+,PABL_B,LTR,ERV1,353,667,0,131526622,131527293 +3 + chr4 131774324 131774369 chr4,131774324,131774517,+,MER77,LTR,ERVL,14,225,-379,131774311,131774896 +4 + chr4 131774593 131774969 chr4,131774537,131774969,+,MER77,LTR,ERVL,161,602,-2,131774377,131774971 +5 + chr4 131774999 131775036 chr4,131774999,131775435,-,L1MEg,LINE,L1,-4500,2133,1684,131770499,131777118 -5 - chr4 131975923 131975952 chr4,131975769,131977364,-,SST1,Satellite,centr,0,1563,1,131975769,131977364 +1 - chr4 132004810 132005074 chr4,132004790,132005100,+,AluJr4,SINE,Alu,1,301,-11,132004790,132005111 -5 + chr4 132027279 132027310 chr4,132027279,132027310,+,(TCTCCC)n,Simple_repeat,Simple_repeat,1,31,0,132027279,132027310 -6 + chr4 132028346 132028481 chr4,132028326,132028512,+,FAM,SINE,Alu,3,185,0,132028324,132028512 -1 + chr4 132123851 132123891 chr4,132123480,132123891,+,LTR7,LTR,ERV1,1,448,-2,132123480,132123893 -4 + chr4 132123925 132124031 chr4,132123925,132124202,-,LTR12F,LTR,ERV1,-13,506,224,132123912,132124425 +1 - chr4 132435814 132435913 chr4,132435814,132435913,+,(CTT)n,Simple_repeat,Simple_repeat,1,104,0,132435814,132435913 -6 + chr4 132446372 132446495 chr4,132446238,132453850,+,L1MA1,LINE,L1,12,7721,0,132446227,132453850 -1 + chr4 132447032 132447235 chr4,132446238,132453850,+,L1MA1,LINE,L1,12,7721,0,132446227,132453850 -1 + chr4 132591089 132591276 chr4,132590805,132591337,+,MLT1F,LTR,ERVL-MaLR,5,529,-19,132590801,132591356 +1 + chr4 132644708 132644842 chr4,132644512,132645441,+,HERV16-int,LTR,ERVL,494,1457,-3539,132644019,132648980 +3 + chr4 132678423 132678503 chr4,132678403,132678922,-,Charlie2b,DNA,hAT-Charlie,-2178,604,28,132676225,132678949 -5 - chr4 132837075 132837194 chr4,132837075,132837418,+,L3,LINE,CR1,2341,2727,-1372,132834735,132838790 -2 + chr4 132870386 132870517 chr4,132870265,132872687,+,L1MA2,LINE,L1,17,2472,-5093,132870249,132877780 -3 + chr4 133075311 133075439 chr4,133075261,133075653,-,MSTA,LTR,ERVL-MaLR,0,428,1,133075261,133075653 +5 - chr4 133077369 133077455 chr4,133077286,133077670,-,MSTA,LTR,ERVL-MaLR,0,428,1,133077286,133077670 +3 - chr4 133078338 133078378 chr4,133078176,133078378,+,MIRb,SINE,MIR,35,260,-8,133078142,133078386 -4 + chr4 133093892 133094263 chr4,133093892,133094263,+,L1M5,LINE,L1,3902,4298,-1848,133089991,133096111 -6 + chr4 133094295 133094584 chr4,133094295,133094584,+,AluSc8,SINE,Alu,1,288,-23,133094295,133094607 -6 + chr4 133094630 133094843 chr4,133094630,133094843,+,MIR,SINE,MIR,31,262,0,133094600,133094843 -6 + chr4 133094895 133095358 chr4,133094895,133095358,+,L1M5,LINE,L1,4516,4990,-1156,133090380,133096514 -6 + chr4 133095778 133095950 chr4,133095778,133096067,+,MLT1K,LTR,ERVL-MaLR,200,495,-100,133095579,133096167 -2 + chr4 133096736 133096883 chr4,133096719,133097191,-,MLT1J1-int,LTR,ERVL-MaLR,-19,1368,893,133096700,133098083 +1 - chr4 133138987 133139031 chr4,133138987,133139031,+,(TTTTGT)n,Simple_repeat,Simple_repeat,1,45,0,133138987,133139031 -6 + chr4 133871246 133871358 chr4,133871116,133871358,+,L1MEd,LINE,L1,3587,3823,-2323,133867530,133873681 -5 + chr4 133977966 133978044 chr4,133977722,133978055,+,ERV3-16A3_I-int,LTR,ERVL,2388,2711,-2285,133975335,133980340 -3 + chr4 133978882 133978893 chr4,133978882,133979129,+,L1M4,LINE,L1,4292,4553,-1593,133974591,133980722 -2 + chr4 134010609 134010690 chr4,134010448,134010768,-,MLT1J2,LTR,ERVL-MaLR,-2,446,116,134010446,134010883 +1 - chr4 134255336 134255520 chr4,134255336,134255624,-,L1MA4,LINE,L1,-5772,1724,1455,134249564,134257078 +2 - chr4 134305548 134305698 chr4,134305548,134305698,-,MIR,SINE,MIR,-19,249,79,134305529,134305776 +6 - chr4 134307541 134307723 chr4,134307399,134307883,-,MLT1H1,LTR,ERVL-MaLR,-4,551,32,134307395,134307914 +5 - chr4 134455294 134455524 chr4,134455215,134455578,-,MLT1A0,LTR,ERVL-MaLR,0,365,4,134455215,134455581 -3 - chr4 134780256 134780377 chr4,134779603,134780394,-,L1MEg,LINE,L1,-5119,1967,1133,134774484,134781526 -3 - chr4 134789253 134789343 chr4,134789253,134792125,+,L1PA7,LINE,L1,5,2842,-3304,134789249,134795429 +4 + chr4 134815957 134816023 chr4,134815395,134816084,-,L1PA13,LINE,L1,-4,6159,5468,134815391,134821551 -3 - chr4 134817212 134817289 chr4,134816453,134817480,-,THE1C-int,LTR,ERVL-MaLR,0,1580,547,134816453,134818026 -5 - chr4 134932974 134933030 chr4,134932974,134933030,-,MIR1_Amn,SINE,MIR,-156,74,19,134932818,134933048 +6 - chr4 135070960 135071373 chr4,135070960,135071373,+,L1PA4,LINE,L1,5734,6147,-8,135065227,135071381 +6 + chr4 135121268 135121445 chr4,135121166,135121467,+,AluSx1,SINE,Alu,1,301,-11,135121166,135121478 -5 + chr4 135792404 135792520 chr4,135792404,135792520,+,LTR16,LTR,ERVL,6,124,-314,135792399,135792834 -6 + chr4 135792520 135792795 chr4,135792520,135792817,+,AluY,SINE,Alu,3,298,-13,135792518,135792830 -2 + chr4 135792948 135793015 chr4,135792948,135793072,+,LTR16,LTR,ERVL,313,436,-2,135792636,135793074 -2 + chr4 135887971 135888090 chr4,135887859,135888302,-,MLT1C,LTR,ERVL-MaLR,0,467,1,135887859,135888302 +1 - chr4 136098825 136099240 chr4,136098825,136099390,-,LTR12D,LTR,ERV1,0,1254,662,136098825,136100051 +1 - chr4 136118870 136118981 chr4,136118870,136119118,-,AluJr4,SINE,Alu,-46,266,1,136118824,136119118 +2 - chr4 136119850 136120045 chr4,136119780,136120045,-,MLT1K,LTR,ERVL-MaLR,-37,558,279,136119743,136120323 +4 - chr4 136126947 136127159 chr4,136126876,136127243,+,THE1B,LTR,ERVL-MaLR,1,364,0,136126876,136127243 +3 + chr4 136138705 136138874 chr4,136138630,136138964,-,MLT1G1,LTR,ERVL-MaLR,-3,576,252,136138627,136139215 -5 - chr4 136261409 136261450 chr4,136260085,136264421,+,L1PA17,LINE,L1,84,4470,-2445,136260002,136266866 -3 + chr4 136281058 136281101 chr4,136280983,136281101,+,L1MC2,LINE,L1,810,954,-5091,136280174,136286192 -4 + chr4 136281101 136281294 chr4,136281101,136281733,-,LTR9B,LTR,ERV1,0,644,1,136281101,136281733 +1 - chr4 136395166 136395471 chr4,136395166,136396652,+,LTR12C,LTR,ERV1,3,1579,0,136395164,136396652 -1 + chr4 136553236 136553336 chr4,136553034,136553336,-,AluJb,SINE,Alu,-10,302,1,136553024,136553336 -1 - chr4 136796964 136797261 chr4,136796964,136797261,-,ERVL-E-int,LTR,ERVL,-282,5385,5069,136796682,136802329 +6 - chr4 136797468 136797846 chr4,136797468,136797846,+,ERVL-B4-int,LTR,ERVL,4080,4460,-1254,136793389,136799100 -6 + chr4 136809069 136809212 chr4,136809035,136809227,-,MLT1A0,LTR,ERVL-MaLR,0,365,174,136809035,136809400 +5 - chr4 136921342 136921382 chr4,136921275,136921628,-,THE1A,LTR,ERVL-MaLR,0,355,1,136921275,136921628 +1 - chr4 137193756 137193847 chr4,137193712,137193847,+,LTR67B,LTR,ERVL,34,173,-447,137193679,137194294 +1 + chr4 137194019 137194168 chr4,137194019,137194168,+,LTR67B,LTR,ERVL,469,620,0,137193551,137194168 +6 + chr4 137197206 137197339 chr4,137197032,137197339,-,MLT1J2,LTR,ERVL-MaLR,-4,444,115,137197028,137197453 -2 - chr4 137198275 137198366 chr4,137198275,137198366,-,L2b,LINE,L2,-5,3421,3289,137198270,137201654 -6 - chr4 137601327 137601639 chr4,137601327,137601639,+,AluSx1,SINE,Alu,1,312,0,137601327,137601639 +6 + chr4 137603187 137603381 chr4,137603187,137603381,+,MIR,SINE,MIR,1,234,-34,137603187,137603415 +6 + chr4 137645265 137645493 chr4,137645077,137646132,+,Tigger4,DNA,TcMar-Tigger,1732,2730,-1,137643346,137646133 -5 + chr4 137690477 137690679 chr4,137690430,137690868,-,MLT1C,LTR,ERVL-MaLR,-2,465,9,137690428,137690876 +5 - chr4 137693754 137693796 chr4,137693520,137693796,-,Tigger18a,DNA,TcMar-Tigger,-523,329,30,137692997,137693825 +4 - chr4 137734920 137734977 chr4,137733562,137734980,+,LTR12C,LTR,ERV1,10,1576,-3,137733553,137734983 -1 + chr4 137816210 137816245 chr4,137815814,137816245,+,MER63C,DNA,hAT-Blackjack,236,678,-252,137815579,137816497 +2 + chr4 138028593 138028702 chr4,138028503,138028730,+,MIR,SINE,MIR,7,251,-11,138028497,138028741 -3 + chr4 138048380 138048460 chr4,138048243,138048460,-,MIR,SINE,MIR,-31,231,13,138048212,138048472 +4 - chr4 138057464 138057508 chr4,138057231,138057593,+,THE1B,LTR,ERVL-MaLR,1,364,0,138057231,138057593 +1 + chr4 138062808 138062886 chr4,138062300,138062886,-,L1M4b,LINE,L1,-6282,585,2,138056018,138062887 -2 - chr4 138089014 138089249 chr4,138087760,138089249,-,LTR12C,LTR,ERV1,0,1579,3,138087760,138089251 -1 - chr4 138105046 138105159 chr4,138105046,138105159,+,MLT2B1,LTR,ERVL,6,112,-408,138105041,138105567 +6 + chr4 138105159 138105464 chr4,138105159,138105464,+,AluSz6,SINE,Alu,1,312,0,138105159,138105464 +1 + chr4 138105464 138105791 chr4,138105464,138105838,+,MLT2B1,LTR,ERVL,113,478,-42,138105352,138105880 +1 + chr4 138129373 138129510 chr4,138129165,138130352,-,HERVL74-int,LTR,ERVL,-3369,2316,1045,138125796,138131396 +3 - chr4 138159808 138159892 chr4,138159775,138159916,+,MIR1_Amn,SINE,MIR,64,200,-62,138159712,138159978 +3 + chr4 138169156 138169192 chr4,138169156,138169192,+,(ATGT)n,Simple_repeat,Simple_repeat,1,38,0,138169156,138169192 +6 + chr4 138177409 138177485 chr4,138177409,138177485,+,(TC)n,Simple_repeat,Simple_repeat,1,76,0,138177409,138177485 +6 + chr4 138177507 138177747 chr4,138177507,138177747,+,MIRb,SINE,MIR,15,250,-18,138177493,138177765 +6 + chr4 138177790 138178011 chr4,138177790,138178011,+,L2,LINE,L2,2582,2815,-604,138175209,138178615 +6 + chr4 138178010 138178160 chr4,138178010,138178160,+,MIR,SINE,MIR,41,191,-71,138177970,138178231 +6 + chr4 138178165 138178177 chr4,138178165,138178593,-,L1PA8,LINE,L1,-201,5971,5545,138177964,138184137 -5 - chr4 138277130 138277473 chr4,138277130,138277789,+,MamGyp-int,LTR,Gypsy,21,696,-4407,138277110,138282196 -2 + chr4 138309791 138309847 chr4,138309791,138309988,+,MIRc,SINE,MIR,8,236,-32,138309784,138310020 +4 + chr4 138312315 138312658 chr4,138312315,138312788,-,MER70A,LTR,ERVL,0,472,1,138312315,138312788 +1 - chr4 138313358 138313413 chr4,138313358,138313413,+,MER5A,DNA,hAT-Charlie,63,121,-68,138313296,138313481 +6 + chr4 138313448 138313720 chr4,138313448,138313921,-,L1PA8,LINE,L1,-7,6165,5695,138313441,138319615 -5 - chr4 138339012 138339138 chr4,138339000,138339138,+,MLT1J2,LTR,ERVL-MaLR,67,209,-239,138338934,138339377 +2 + chr4 138361296 138361402 chr4,138360954,138361911,+,Tigger2b_Pri,DNA,TcMar-Tigger,86,1067,-1,138360869,138361912 +3 + chr4 138424048 138424058 chr4,138423715,138424058,-,Arthur1B,DNA,hAT-Tip100,-868,357,4,138422847,138424061 -2 - chr4 138425523 138425604 chr4,138425137,138425691,+,MLT2A2,LTR,ERVL,1,552,-2,138425137,138425693 +1 + chr4 138664887 138665138 chr4,138664887,138665411,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,138664887,138665411 -2 + chr4 138800064 138800107 chr4,138799505,138800356,-,L2c,LINE,L2,-223,3164,2202,138799282,138802557 -3 - chr4 138801347 138801639 chr4,138801347,138801659,-,AluSq,SINE,Alu,-1,312,1,138801346,138801659 -5 - chr4 138924057 138924232 chr4,138924057,138924343,+,AluSz6,SINE,Alu,4,312,0,138924054,138924343 -1 + chr4 139012595 139012646 chr4,139012457,139012768,+,AluSz,SINE,Alu,1,310,-2,139012457,139012770 -1 + chr4 139411962 139412112 chr4,139411962,139412112,-,Tigger16a,DNA,TcMar-Tigger,-280,677,526,139411682,139412637 +6 - chr4 139412173 139412287 chr4,139412173,139412287,-,L1MB3,LINE,L1,0,6183,6060,139412173,139418346 +6 - chr4 139412261 139412946 chr4,139412261,139412946,-,L1MA4,LINE,L1,-279,6021,5329,139411982,139418274 +6 - chr4 139412946 139413240 chr4,139412946,139413240,-,AluSc,SINE,Alu,-11,298,1,139412935,139413240 +6 - chr4 139413240 139413948 chr4,139413240,139413948,-,L1MA4,LINE,L1,-972,5328,4636,139412268,139418583 +5 - chr4 139415937 139416086 chr4,139415848,139416086,+,MIRb,SINE,MIR,15,268,0,139415834,139416086 -4 + chr4 139416093 139416146 chr4,139416093,139416214,+,MIR3,SINE,MIR,77,206,-2,139416017,139416216 -1 + chr4 139419870 139419923 chr4,139419866,139420147,+,L1MEf,LINE,L1,504,778,-5422,139419363,139425569 -3 + chr4 139448443 139448717 chr4,139448432,139448717,-,AluSz,SINE,Alu,-11,301,1,139448421,139448717 +5 - chr4 139448717 139448800 chr4,139448717,139448800,+,Tigger16a,DNA,TcMar-Tigger,858,941,-16,139447860,139448816 -6 + chr4 139448802 139448950 chr4,139448802,139448950,+,(GT)n,Simple_repeat,Simple_repeat,1,149,0,139448802,139448950 -6 + chr4 139449094 139449159 chr4,139449094,139449159,-,FLAM_C,SINE,Alu,-77,56,1,139449017,139449159 +6 - chr4 139449161 139449372 chr4,139449161,139449372,+,HERVL-int,LTR,ERVL,5436,5654,0,139443726,139449372 -6 + chr4 139449372 139449816 chr4,139449372,139449816,+,MLT2A2,LTR,ERVL,1,451,-2,139449372,139449818 -6 + chr4 139450495 139450692 chr4,139450495,139450692,+,MER20,DNA,hAT-Charlie,16,218,-1,139450480,139450693 -6 + chr4 139450894 139451198 chr4,139450894,139451198,-,AluSq2,SINE,Alu,-6,307,1,139450888,139451198 +6 - chr4 139451200 139451361 chr4,139451200,139451361,-,FRAM,SINE,Alu,-13,163,4,139451187,139451364 +6 - chr4 139451363 139451673 chr4,139451363,139451673,-,AluSz,SINE,Alu,0,312,3,139451363,139451675 +6 - chr4 139451794 139451871 chr4,139451794,139451871,+,LTR104_Mam,LTR,Gypsy,1074,1148,-361,139450721,139452232 -6 + chr4 139452412 139452539 chr4,139452412,139452539,-,Charlie30a,DNA,hAT-Charlie,-548,243,105,139451864,139452643 +6 - chr4 139618759 139619101 chr4,139618759,139619189,+,MLT1L,LTR,ERVL-MaLR,105,609,-1,139618655,139619190 -2 + chr4 140284770 140284792 chr4,140284770,140284792,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,140284770,140284792 -6 + chr4 140285019 140285194 chr4,140285019,140285194,-,MIRb,SINE,MIR,-24,244,28,140284995,140285221 +6 - chr4 140291390 140291529 chr4,140290835,140291777,-,ERV3-16A3_I-int,LTR,ERVL,-2041,3185,2231,140288794,140294007 +3 - chr4 140293261 140293353 chr4,140292487,140293353,-,ERV3-16A3_I-int,LTR,ERVL,-4346,880,12,140288141,140293364 +4 - chr4 140293353 140293423 chr4,140293353,140293802,-,LTR16B1,LTR,ERVL,0,480,3,140293353,140293804 +2 - chr4 140360689 140360791 chr4,140360689,140360791,-,L2a,LINE,L2,0,3426,3311,140360689,140364101 +6 - chr4 140498434 140498501 chr4,140498434,140498501,+,MIRb,SINE,MIR,188,258,-10,140498247,140498511 +6 + chr4 140498783 140499041 chr4,140498783,140499041,-,LTR33,LTR,ERVL,-247,268,1,140498536,140499041 -6 - chr4 140499073 140499233 chr4,140499073,140499233,+,L2,LINE,L2,2363,2535,-884,140496711,140500117 +6 + chr4 140499778 140500000 chr4,140499778,140500000,-,MER30,DNA,hAT-Charlie,0,230,15,140499778,140500014 -6 - chr4 140500376 140500634 chr4,140500376,140500634,+,L1MA7,LINE,L1,6026,6290,-1,140494351,140500635 +6 + chr4 140757472 140757502 chr4,140757472,140757502,+,(A)n,Simple_repeat,Simple_repeat,1,30,0,140757472,140757502 +6 + chr4 141240739 141240914 chr4,141240576,141240914,+,LTR16E2,LTR,ERVL,147,492,-76,141240430,141240990 -5 + chr4 141240994 141241038 chr4,141240994,141241038,+,A-rich,Low_complexity,Low_complexity,1,46,0,141240994,141241038 -6 + chr4 141241073 141241329 chr4,141241073,141241361,+,AluSx1,SINE,Alu,1,295,-17,141241073,141241378 -2 + chr4 141274346 141274440 chr4,141274346,141274464,+,L1PA16,LINE,L1,6046,6163,-3,141268301,141274467 -2 + chr4 141278664 141278789 chr4,141278664,141279244,-,LTR22,LTR,ERVK,0,571,1,141278664,141279244 +1 - chr4 141319601 141319673 chr4,141319601,141319673,-,MIR3,SINE,MIR,-5,203,133,141319596,141319805 +6 - chr4 141321223 141321337 chr4,141321223,141321337,-,MIR,SINE,MIR,-7,255,145,141321216,141321481 +6 - chr4 141321337 141321381 chr4,141321337,141321689,-,THE1A,LTR,ERVL-MaLR,0,355,1,141321337,141321689 +2 - chr4 141323686 141323748 chr4,141323686,141323748,+,L3,LINE,CR1,4034,4095,-4,141319653,141323752 -6 + chr4 141323746 141323842 chr4,141323746,141323842,-,MIR3,SINE,MIR,-64,144,48,141323682,141323889 +6 - chr4 141325925 141326007 chr4,141325925,141326015,-,MLT1C,LTR,ERVL-MaLR,-118,431,346,141325807,141326360 +1 - chr4 141332159 141332187 chr4,141332022,141332187,-,OldhAT1,DNA,hAT-Ac,-106,2742,2565,141331916,141334751 +4 - chr4 141332214 141332618 chr4,141332214,141333759,-,LTR12C,LTR,ERV1,0,1579,3,141332214,141333761 +1 - chr4 141430838 141430983 chr4,141430838,141430983,+,MLT1N2,LTR,ERVL-MaLR,108,261,-301,141430731,141431284 +6 + chr4 141431046 141431152 chr4,141431046,141431152,+,MamRep434,DNA,TcMar-Tigger,108,215,-211,141430939,141431363 +6 + chr4 141569931 141569982 chr4,141569586,141570296,+,L1ME4b,LINE,L1,12,669,-223,141569575,141570519 -5 + chr4 141575992 141576009 chr4,141575935,141576009,-,MER63B,DNA,hAT-Blackjack,-43,393,318,141575892,141576326 +4 - chr4 141576052 141576077 chr4,141576052,141576767,+,L2,LINE,L2,1235,1996,-1423,141574818,141578190 -1 + chr4 142518703 142518983 chr4,142518500,142519029,+,MLT1F,LTR,ERVL-MaLR,2,548,0,142518499,142519029 +5 + chr4 142566070 142566190 chr4,142566070,142566604,-,L2c,LINE,L2,-514,2905,2363,142565556,142568966 -4 - chr4 142660783 142660950 chr4,142659420,142660980,+,MER61-int,LTR,ERV1,3629,5217,0,142655792,142660980 +5 + chr4 142940110 142940245 chr4,142940110,142940339,-,L2a,LINE,L2,-9,3417,3189,142940101,142943527 +2 - chr4 143177660 143178096 chr4,143177565,143180491,-,HERVP71A-int,LTR,ERV1,-1802,5788,2829,143175763,143183319 +5 - chr4 143184774 143184834 chr4,143184774,143184834,+,G-rich,Low_complexity,Low_complexity,1,62,0,143184774,143184834 -1 + chr4 143184836 143184861 chr4,143184836,143184873,+,(GGCGGAGG)n,Simple_repeat,Simple_repeat,1,37,0,143184836,143184873 -1 + chr4 143329279 143329858 chr4,143329109,143330386,+,HSMAR1,DNA,TcMar-Mariner,4,1287,0,143329106,143330386 +5 + chr4 143738975 143739117 chr4,143738953,143739256,-,AluJr,SINE,Alu,-10,302,2,143738943,143739257 -3 - chr4 143808314 143808370 chr4,143808018,143808447,+,MSTB2,LTR,ERVL-MaLR,1,453,-4,143808018,143808451 +3 + chr4 143832560 143832615 chr4,143832335,143832696,+,THE1D,LTR,ERVL-MaLR,1,381,0,143832335,143832696 +3 + chr4 143861142 143861186 chr4,143860800,143861186,+,MLT1A,LTR,ERVL-MaLR,1,374,0,143860800,143861186 +2 + chr4 143912418 143912449 chr4,143912418,143912670,+,MER102a,DNA,hAT-Charlie,38,284,-46,143912381,143912716 +4 + chr4 143912540 143912638 chr4,143912418,143912670,+,MER102a,DNA,hAT-Charlie,38,284,-46,143912381,143912716 +3 + chr4 143937867 143937923 chr4,143937571,143938000,+,MSTB2,LTR,ERVL-MaLR,1,453,-4,143937571,143938004 +1 + chr4 143953635 143953690 chr4,143953410,143953772,+,THE1D,LTR,ERVL-MaLR,1,381,0,143953410,143953772 +1 + chr4 143969252 143969379 chr4,143968952,143969420,+,MLT1K,LTR,ERVL-MaLR,96,553,-42,143968857,143969462 +3 + chr4 143973110 143973251 chr4,143972893,143973606,-,L1PB3,LINE,L1,0,6154,5440,143972893,143979045 -3 - chr4 143981786 143981966 chr4,143981580,143981966,+,MLT1A,LTR,ERVL-MaLR,1,374,0,143981580,143981966 +5 + chr4 144085202 144085246 chr4,144084859,144085246,+,MLT1A,LTR,ERVL-MaLR,1,374,0,144084859,144085246 +2 + chr4 144090062 144090131 chr4,144090062,144090259,-,MER41A,LTR,ERV1,0,554,355,144090062,144090613 -4 - chr4 144505900 144505980 chr4,144505674,144505980,-,L2a,LINE,L2,-1,3425,3079,144505673,144509058 -1 - chr4 144506526 144506980 chr4,144506526,144506980,+,MLT1C,LTR,ERVL-MaLR,6,467,0,144506521,144506980 +6 + chr4 144643014 144643051 chr4,144643014,144643051,+,(ATAC)n,Simple_repeat,Simple_repeat,1,39,0,144643014,144643051 -6 + chr4 144851583 144851648 chr4,144851583,144851648,-,L2c,LINE,L2,-342,3045,2972,144851241,144854619 -6 - chr4 144873559 144873801 chr4,144873559,144873801,+,Charlie7,DNA,hAT-Charlie,31,267,-2345,144873529,144876146 +6 + chr4 144873801 144874211 chr4,144873801,144874211,-,MLT1J1,LTR,ERVL-MaLR,-1,443,1,144873800,144874211 -6 - chr4 144874211 144874787 chr4,144874211,144874864,+,Charlie7,DNA,hAT-Charlie,268,965,-1647,144873944,144876511 +5 + chr4 145335311 145335517 chr4,145335311,145335517,-,MIRb,SINE,MIR,-1,267,31,145335310,145335547 +6 - chr4 145335563 145335721 chr4,145335563,145335721,-,MIR3,SINE,MIR,-3,205,34,145335560,145335754 +6 - chr4 145335876 145336119 chr4,145335876,145336124,-,MLT1F1,LTR,ERVL-MaLR,-29,540,221,145335847,145336344 +2 - chr4 145337201 145337313 chr4,145337191,145337517,+,MLT1L,LTR,ERVL-MaLR,270,595,-15,145336922,145337532 -3 + chr4 145340361 145340416 chr4,145340236,145340416,+,MIRb,SINE,MIR,26,221,-47,145340211,145340463 -4 + chr4 145497073 145497248 chr4,145497073,145497248,+,Tigger19a,DNA,TcMar-Tigger,128,319,-4,145496946,145497252 -5 + chr4 145600396 145600552 chr4,145600085,145600960,-,Charlie25,DNA,hAT-Charlie,-125,2399,1453,145599960,145602412 -5 - chr4 145650591 145650624 chr4,145650591,145651027,-,L2c,LINE,L2,-2109,1310,830,145648482,145651856 +1 - chr4 145830633 145830707 chr4,145830633,145830707,+,(TA)n,Simple_repeat,Simple_repeat,1,76,0,145830633,145830707 -6 + chr4 145830923 145831045 chr4,145830923,145831045,+,Charlie26a,DNA,hAT-Charlie,88,210,-115,145830836,145831160 -6 + chr4 145831657 145831903 chr4,145831657,145831903,+,L1MC5a,LINE,L1,2490,2770,-7,145829168,145831910 -6 + chr4 145831932 145831980 chr4,145831932,145831980,+,L1M5,LINE,L1,5300,5350,-774,145826633,145832754 -6 + chr4 145831980 145832294 chr4,145831980,145832294,+,AluJb,SINE,Alu,1,312,0,145831980,145832294 -6 + chr4 145832301 145832335 chr4,145832301,145832335,+,(CA)n,Simple_repeat,Simple_repeat,1,34,0,145832301,145832335 -6 + chr4 145832335 145832611 chr4,145832335,145832611,+,L1M5,LINE,L1,5356,5628,-496,145826980,145833107 -6 + chr4 145832611 145832980 chr4,145832611,145833009,+,LTR7,LTR,ERV1,1,448,-2,145832611,145833011 -1 + chr4 145833118 145833157 chr4,145833011,145836291,+,HERVH-int,LTR,ERV1,1,3290,-4423,145833011,145840714 +1 + chr4 145834973 145835294 chr4,145833011,145836291,+,HERVH-int,LTR,ERV1,1,3290,-4423,145833011,145840714 +1 + chr4 146052604 146052767 chr4,146052563,146052767,-,LTR16C,LTR,ERVL,-2,487,283,146052561,146053049 +5 - chr4 146053892 146054309 chr4,146053892,146054309,-,ERVL-E-int,LTR,ERVL,-2323,2903,2480,146051569,146056788 +6 - chr4 146054489 146054808 chr4,146054489,146054808,-,MLT1G1,LTR,ERVL-MaLR,-307,284,1,146054182,146054808 +6 - chr4 146054832 146055286 chr4,146054832,146055286,-,HERV16-int,LTR,ERVL,-4186,810,361,146050646,146055646 +6 - chr4 146055610 146056091 chr4,146055610,146056091,-,LTR16E1,LTR,ERVL,-1,537,2,146055609,146056092 +6 - chr4 146056111 146056480 chr4,146056111,146056480,+,L1M6B,LINE,L1,2,347,-2160,146056110,146058640 -6 + chr4 146056520 146056762 chr4,146056520,146057441,+,L1M6B,LINE,L1,426,1374,-1133,146056095,146058574 -1 + chr4 146093805 146093968 chr4,146093523,146094166,-,LTR41,LTR,ERVL,-16,779,1,146093507,146094166 +3 - chr4 146109546 146109682 chr4,146109546,146109682,+,L3,LINE,CR1,3959,4094,-5,146105588,146109687 -6 + chr4 146109735 146109866 chr4,146109735,146109999,+,MIR,SINE,MIR,10,262,0,146109726,146109999 -2 + chr4 146110850 146110993 chr4,146110850,146111046,+,MIRb,SINE,MIR,31,234,-34,146110820,146111080 -2 + chr4 146111339 146111473 chr4,146111339,146111504,+,MamRTE1,LINE,RTE-BovB,3129,3291,-521,146108211,146112025 -5 + chr4 146111601 146111735 chr4,146111523,146111735,-,MIRb,SINE,MIR,-6,262,10,146111517,146111744 +1 - chr4 146112125 146112210 chr4,146112125,146112334,+,MIRb,SINE,MIR,4,197,-71,146112122,146112405 -1 + chr4 146113642 146113711 chr4,146113518,146113711,-,Ricksha_c,DNA,MULE-MuDR,-1142,906,742,146112376,146114452 +4 - chr4 146113713 146113818 chr4,146113713,146113818,-,L2c,LINE,L2,-371,3055,2960,146113342,146116777 +6 - chr4 146114352 146114465 chr4,146114352,146114722,-,MLT2B3,LTR,ERVL,-192,362,4,146114160,146114725 +2 - chr4 146181047 146181078 chr4,146181047,146181078,+,(TAG)n,Simple_repeat,Simple_repeat,1,31,0,146181047,146181078 +6 + chr4 146232192 146232267 chr4,146232192,146232666,-,MLT1H1,LTR,ERVL-MaLR,0,555,5,146232192,146232670 -5 - chr4 146243186 146243367 chr4,146243158,146243367,-,MIRc,SINE,MIR,-10,258,34,146243148,146243400 -2 - chr4 146934001 146934337 chr4,146933924,146935245,-,L2a,LINE,L2,-264,3162,1577,146933660,146936821 -1 - chr4 146957438 146957486 chr4,146957279,146957696,+,ERVL-int,LTR,ERVL,4054,4484,-1273,146953226,146958969 +1 + chr4 146959445 146959530 chr4,146959435,146959530,-,MIR,SINE,MIR,-164,98,2,146959271,146959531 -2 - chr4 146962243 146962345 chr4,146961980,146962399,-,L2a,LINE,L2,-32,3394,3011,146961948,146965409 -3 - chr4 146975071 146975100 chr4,146974480,146975100,+,LTR31,LTR,ERV1,1,619,0,146974480,146975100 +2 + chr4 147005492 147005503 chr4,147005480,147005503,+,(TC)n,Simple_repeat,Simple_repeat,1,23,0,147005480,147005503 +1 + chr4 147005504 147005538 chr4,147005504,147005538,+,(TATT)n,Simple_repeat,Simple_repeat,1,34,0,147005504,147005538 +6 + chr4 147005569 147006208 chr4,147005569,147006208,-,L2a,LINE,L2,-100,3326,2656,147005469,147008863 -6 - chr4 147006324 147006372 chr4,147006324,147006372,-,L2c,LINE,L2,-5,3382,3334,147006319,147009705 -6 - chr4 147008170 147008231 chr4,147008170,147008231,+,L3,LINE,CR1,4038,4098,-1,147004133,147008232 +6 + chr4 147008739 147008932 chr4,147008739,147008932,+,MIRb,SINE,MIR,17,217,-51,147008723,147008983 +6 + chr4 147025940 147026118 chr4,147025940,147026118,+,MIR,SINE,MIR,65,262,0,147025876,147026118 +6 + chr4 147026135 147026289 chr4,147026135,147026289,+,L2a,LINE,L2,3269,3426,0,147022867,147026289 +6 + chr4 147027840 147028519 chr4,147027840,147028519,+,L2c,LINE,L2,2660,3387,0,147025181,147028519 +6 + chr4 147028978 147029428 chr4,147028978,147029428,-,MamRTE1,LINE,RTE-BovB,-868,2944,2455,147028110,147031882 -6 - chr4 147488093 147488220 chr4,147488093,147488220,-,Helitron3Na_Mam,RC,Helitron,-12,474,347,147488081,147488566 -6 - chr4 147488217 147488350 chr4,147488217,147488350,-,Helitron3Na_Mam,RC,Helitron,-283,203,66,147487934,147488415 -6 - chr4 147489162 147489307 chr4,147489162,147489307,-,L1PB4,LINE,L1,0,6156,6012,147489162,147495318 -6 - chr4 147490142 147490187 chr4,147490142,147490187,+,(AC)n,Simple_repeat,Simple_repeat,1,45,0,147490142,147490187 +6 + chr4 147491555 147491599 chr4,147491555,147491599,+,(ATG)n,Simple_repeat,Simple_repeat,1,44,0,147491555,147491599 +6 + chr4 147491908 147492303 chr4,147491908,147492303,+,L2c,LINE,L2,2918,3386,-1,147488991,147492304 +6 + chr4 147493253 147493286 chr4,147493253,147493286,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,147493253,147493286 +6 + chr4 147493489 147493671 chr4,147493489,147493671,-,Penelope1_Vert,LINE,Penelope,-65,1022,814,147493424,147494484 -6 - chr4 147494210 147494601 chr4,147494210,147494601,-,L2a,LINE,L2,-56,3370,2924,147494154,147497524 -6 - chr4 147494648 147494756 chr4,147494648,147494756,-,MER94,DNA,hAT-Blackjack,-3,131,16,147494645,147494771 -6 - chr4 147494773 147494873 chr4,147494773,147494873,-,L2a,LINE,L2,-528,2891,2793,147494245,147497665 -6 - chr4 147494873 147494952 chr4,147494873,147494952,+,AluJo,SINE,Alu,1,79,-233,147494873,147495185 +6 + chr4 147495058 147495268 chr4,147495058,147495268,-,MIR,SINE,MIR,-23,245,1,147495035,147495268 -6 - chr4 147567606 147567666 chr4,147566854,147567666,-,ERVL-E-int,LTR,ERVL,-2365,3302,2461,147564489,147570126 -1 - chr4 147567666 147567708 chr4,147567666,147568379,+,LTR8,LTR,ERV1,1,690,-1,147567666,147568380 +4 + chr4 147570788 147570821 chr4,147570688,147570821,-,Charlie15a,DNA,hAT-Charlie,0,224,84,147570688,147570904 -2 - chr4 147573216 147573306 chr4,147573020,147573384,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,147573020,147573384 +3 + chr4 147575443 147575565 chr4,147575412,147575721,-,AluSq2,SINE,Alu,-3,310,2,147575409,147575722 -3 - chr4 147578731 147578855 chr4,147578714,147578971,-,AluJb,SINE,Alu,-17,295,2,147578697,147578972 -3 - chr4 147594265 147594587 chr4,147594243,147594632,+,LTR16C,LTR,ERVL,98,489,0,147594146,147594632 +5 + chr4 147609552 147609685 chr4,147609524,147609685,+,L2,LINE,L2,1741,1898,-1521,147607784,147611206 -5 + chr4 147609686 147609961 chr4,147609686,147609990,+,AluSz,SINE,Alu,2,304,-8,147609685,147609998 -2 + chr4 148207992 148208059 chr4,148207726,148208059,-,MER44A,DNA,TcMar-Tigger,0,339,1,148207726,148208059 -2 - chr4 148208059 148208111 chr4,148208059,148208111,+,MIRb,SINE,MIR,200,251,-17,148207860,148208128 +6 + chr4 148208147 148208262 chr4,148208147,148208314,+,MIRb,SINE,MIR,1,179,-89,148208147,148208403 +4 + chr4 148208843 148208880 chr4,148208843,148208881,+,(AAT)n,Simple_repeat,Simple_repeat,1,40,0,148208843,148208881 +5 + chr4 148819351 148819500 chr4,148819340,148819500,+,L2a,LINE,L2,3253,3426,0,148816088,148819500 -5 + chr4 148819500 148819566 chr4,148819500,148819566,+,GA-rich,Low_complexity,Low_complexity,1,68,0,148819500,148819566 -6 + chr4 148819687 148819724 chr4,148819687,148819724,-,L2c,LINE,L2,0,3387,3351,148819687,148823074 +6 - chr4 148941800 148941842 chr4,148941800,148942223,-,LTR78B,LTR,ERV1,-522,774,304,148941278,148942526 +2 - chr4 149027517 149027545 chr4,149027517,149027960,-,LTR16A,LTR,ERVL,-4,447,2,149027513,149027961 +2 - chr4 149031092 149031310 chr4,149029568,149031932,-,ERV3-16A3_I-int,LTR,ERVL,-2815,2411,32,149026753,149031963 +3 - chr4 149048751 149048798 chr4,149048722,149048964,-,MIR1_Amn,SINE,MIR,-4,264,1,149048718,149048964 +3 - chr4 149149559 149149597 chr4,149149559,149149597,+,(TCT)n,Simple_repeat,Simple_repeat,1,39,0,149149559,149149597 -6 + chr4 149149642 149149755 chr4,149149642,149149755,+,MLT1J,LTR,ERVL-MaLR,347,464,-48,149149296,149149803 -6 + chr4 149149764 149149780 chr4,149149764,149149889,+,L1M5,LINE,L1,4105,4240,-1906,149145660,149151795 -1 + chr4 149155452 149155725 chr4,149155211,149155755,+,MLT1G1,LTR,ERVL-MaLR,1,536,-43,149155211,149155798 +3 + chr4 149203893 149203950 chr4,149203770,149203950,+,L2a,LINE,L2,3242,3424,-2,149200529,149203952 +2 + chr4 149203956 149204101 chr4,149203956,149204101,+,L1ME3C,LINE,L1,6000,6109,-14,149197957,149204115 +6 + chr4 149205081 149205105 chr4,149205081,149205105,+,(TTCA)n,Simple_repeat,Simple_repeat,1,24,0,149205081,149205105 +6 + chr4 149214671 149214713 chr4,149214671,149214713,+,A-rich,Low_complexity,Low_complexity,1,44,0,149214671,149214713 +6 + chr4 149216403 149216577 chr4,149216306,149216733,+,MLT1G1,LTR,ERVL-MaLR,75,574,-5,149216232,149216738 +3 + chr4 149217965 149218020 chr4,149216733,149218152,+,MLT1G1-int,LTR,ERVL-MaLR,1,1479,-10,149216733,149218162 +3 + chr4 149514674 149514742 chr4,149514674,149515071,+,MLT2A2,LTR,ERVL,1,407,-46,149514674,149515117 -2 + chr4 149666057 149666133 chr4,149665761,149666133,+,MLT2A2,LTR,ERVL,121,510,-44,149665641,149666177 +1 + chr4 149666137 149666199 chr4,149666137,149668459,+,L1P3,LINE,L1,8,2351,-4148,149666130,149672607 +4 + chr4 149780231 149780283 chr4,149779816,149780283,+,Tigger8,DNA,TcMar-Tigger,149,627,-40,149779668,149780323 -4 + chr4 149815311 149815342 chr4,149814996,149815342,+,L4_C_Mam,LINE,RTE-X,3771,4147,-991,149811226,149816333 -4 + chr4 149896134 149896233 chr4,149896024,149896571,+,L1P1,LINE,L1,3644,4189,-1957,149892381,149898528 -1 + chr4 149958290 149958410 chr4,149958290,149958410,+,MER5A,DNA,hAT-Charlie,2,139,-50,149958289,149958460 +6 + chr4 149958426 149958572 chr4,149958426,149958707,-,L1MD2,LINE,L1,0,6359,6067,149958426,149964773 -5 - chr4 151333775 151333989 chr4,151333726,151334157,-,MLT1C,LTR,ERVL-MaLR,0,467,1,151333726,151334157 +5 - chr4 151352900 151352921 chr4,151352866,151352921,+,L2b,LINE,L2,3147,3204,-171,151349720,151353092 -4 + chr4 151352921 151353224 chr4,151352921,151353772,-,LTR12,LTR,ERV1,0,826,1,151352921,151353772 +1 - chr4 151674483 151674657 chr4,151674445,151674657,-,L1ME4a,LINE,L1,-5,6119,5873,151674440,151680529 -1 - chr4 151677300 151677431 chr4,151677225,151677761,+,L1MB7,LINE,L1,5328,5858,-326,151671898,151678087 +3 + chr4 151677539 151677761 chr4,151677225,151677761,+,L1MB7,LINE,L1,5328,5858,-326,151671898,151678087 +2 + chr4 151677777 151677881 chr4,151677777,151677881,+,(ATAA)n,Simple_repeat,Simple_repeat,1,108,0,151677777,151677881 +6 + chr4 151799902 151800024 chr4,151799767,151800048,-,MamTip2,DNA,hAT-Tip100,-2,303,19,151799765,151800066 -3 - chr4 151800826 151801092 chr4,151800579,151801092,-,MLT1H,LTR,ERVL-MaLR,-7,542,13,151800572,151801104 -2 - chr4 151801162 151801216 chr4,151801162,151801216,-,MIR3,SINE,MIR,-30,178,113,151801132,151801328 -6 - chr4 151904932 151905313 chr4,151904882,151905407,-,LTR38,LTR,ERV1,-9,547,1,151904873,151905407 +5 - chr4 151906096 151906121 chr4,151906096,151906478,-,LTR49,LTR,ERV1,-31,564,189,151906065,151906666 +2 - chr4 151921801 151921874 chr4,151921801,151922029,+,MLT1L,LTR,ERVL-MaLR,366,610,0,151921436,151922029 +4 + chr4 151955991 151956256 chr4,151955788,151956326,+,MLT1F1,LTR,ERVL-MaLR,2,561,-8,151955787,151956334 +1 + chr4 151967994 151968300 chr4,151967994,151968300,+,AluSx,SINE,Alu,2,309,-3,151967993,151968303 +6 + chr4 151968426 151968546 chr4,151968426,151968546,-,MIR,SINE,MIR,-133,129,9,151968293,151968554 -6 - chr4 151968798 151968905 chr4,151968798,151968905,-,L2b,LINE,L2,-5,3370,3259,151968793,151972163 -6 - chr4 152100754 152100817 chr4,152100450,152100876,-,LTR16,LTR,ERVL,-2,436,3,152100448,152100878 -1 - chr4 152100818 152100876 chr4,152100450,152100876,-,LTR16,LTR,ERVL,-2,436,3,152100448,152100878 -1 - chr4 152100876 152101218 chr4,152100876,152101312,-,L2a,LINE,L2,-193,3233,2795,152100683,152104106 -4 - chr4 152101526 152101841 chr4,152101526,152101841,-,L2a,LINE,L2,-654,2765,2406,152100872,152104246 -6 - chr4 152103893 152104014 chr4,152103893,152104014,+,MLT1N2,LTR,ERVL-MaLR,437,561,-1,152103457,152104015 +6 + chr4 152104097 152104474 chr4,152104097,152104474,+,MLT1B,LTR,ERVL-MaLR,2,390,0,152104096,152104474 +5 + chr4 152104637 152104662 chr4,152104637,152104662,+,(AC)n,Simple_repeat,Simple_repeat,1,25,0,152104637,152104662 +6 + chr4 152104662 152104706 chr4,152104662,152104706,+,(ACAA)n,Simple_repeat,Simple_repeat,4,75,0,152104659,152104706 +6 + chr4 152146385 152146471 chr4,152144907,152146471,-,THE1A-int,LTR,ERVL-MaLR,0,1580,2,152144907,152146472 +5 - chr4 152146472 152146516 chr4,152146472,152146825,-,THE1A,LTR,ERVL-MaLR,0,355,3,152146472,152146827 +2 - chr4 152146988 152147062 chr4,152146825,152147062,+,MER39,LTR,ERV1,473,701,-6,152146353,152147068 -4 + chr4 152148023 152148096 chr4,152147974,152148096,-,MER5A,DNA,hAT-Charlie,-27,162,43,152147947,152148138 +4 - chr4 152207437 152207466 chr4,152207437,152207466,+,GA-rich,Low_complexity,Low_complexity,1,30,0,152207437,152207466 -6 + chr4 152225850 152225870 chr4,152225850,152226017,+,MIR3,SINE,MIR,25,206,-2,152225826,152226019 -1 + chr4 152320702 152320915 chr4,152320702,152320915,+,MIRb,SINE,MIR,25,244,-18,152320678,152320933 -6 + chr4 152536310 152536346 chr4,152536310,152536346,+,(CGC)n,Simple_repeat,Simple_repeat,1,36,0,152536310,152536346 +6 + chr4 152536695 152536724 chr4,152536695,152536724,+,(AATG)n,Simple_repeat,Simple_repeat,1,30,0,152536695,152536724 +6 + chr4 152536724 152536809 chr4,152536724,152536809,+,MIRc,SINE,MIR,166,250,-18,152536559,152536827 +6 + chr4 152538598 152539263 chr4,152538598,152539475,-,L1ME3B,LINE,L1,-3,6239,5331,152538595,152544805 -5 - chr4 152666486 152666607 chr4,152666486,152666607,-,AluJo,SINE,Alu,-189,123,5,152666297,152666611 -6 - chr4 152669365 152669604 chr4,152669365,152669604,-,MER53,DNA,hAT,0,193,1,152669365,152669604 -6 - chr4 152669869 152670107 chr4,152669869,152670299,-,Tigger11a,DNA,TcMar-Tigger,-211,524,74,152669658,152670372 -5 - chr4 153034211 153034230 chr4,153034159,153034230,+,L2c,LINE,L2,3243,3318,-69,153030917,153034299 +1 + chr4 153036812 153036920 chr4,153036791,153036920,-,FLAM_C,SINE,Alu,-10,133,5,153036781,153036924 -2 - chr4 153066190 153066357 chr4,153066046,153066387,+,MLT2D,LTR,ERVL,1,366,-48,153066046,153066435 +3 + chr4 154269181 154269235 chr4,154269181,154269235,-,Tigger19b,DNA,TcMar-Tigger,-303,247,193,154268878,154269427 -6 - chr4 154272168 154272286 chr4,154271740,154272389,-,L1ME1,LINE,L1,0,6179,5512,154271740,154277900 -3 - chr4 154298788 154298819 chr4,154298788,154298922,-,L2a,LINE,L2,0,3426,3283,154298788,154302204 -5 - chr4 155206674 155206798 chr4,155206674,155206798,-,MARNA,DNA,TcMar-Mariner,-381,205,75,155206293,155206872 +6 - chr4 155206968 155207002 chr4,155206968,155207002,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,34,0,155206968,155207002 -6 + chr4 155207330 155207458 chr4,155207330,155207458,-,MIR1_Amn,SINE,MIR,-8,222,83,155207322,155207540 +6 - chr4 155276689 155276714 chr4,155276535,155276733,+,MER20,DNA,hAT-Charlie,6,219,0,155276530,155276733 +1 + chr4 155286162 155286433 chr4,155281849,155286433,-,L1PA2,LINE,L1,-2,6153,2240,155281847,155288672 +5 - chr4 155309004 155309076 chr4,155308973,155309133,+,MER67C,LTR,ERV1,246,406,-305,155308728,155309438 +3 + chr4 155316740 155316828 chr4,155316740,155316863,+,L2a,LINE,L2,3303,3426,0,155313438,155316863 +4 + chr4 155321455 155321710 chr4,155321428,155321729,-,AluSq2,SINE,Alu,-11,302,2,155321417,155321730 -1 - chr4 155330296 155330310 chr4,155330296,155330492,+,MIR,SINE,MIR,58,252,-10,155330239,155330502 +5 + chr4 155337837 155338017 chr4,155337769,155338098,+,THE1D,LTR,ERVL-MaLR,1,344,-37,155337769,155338135 +3 + chr4 155338979 155339050 chr4,155338770,155339129,+,THE1D,LTR,ERVL-MaLR,1,377,-4,155338770,155339133 +3 + chr4 155339781 155339873 chr4,155339647,155340086,-,LTR22C2,LTR,ERVK,-28,468,1,155339619,155340086 -1 - chr4 155339969 155340034 chr4,155339647,155340086,-,LTR22C2,LTR,ERVK,-28,468,1,155339619,155340086 -1 - chr4 155341422 155341540 chr4,155341401,155341696,-,AluSp,SINE,Alu,-17,296,1,155341384,155341696 -3 - chr4 155346475 155346560 chr4,155346475,155346713,+,MIRb,SINE,MIR,8,264,-4,155346468,155346717 +5 + chr4 155351027 155351207 chr4,155351013,155351764,+,L1ME4b,LINE,L1,1,178,-714,155351013,155352478 +5 + chr4 155361257 155361322 chr4,155361257,155361395,+,MIRb,SINE,MIR,16,174,-94,155361242,155361489 +4 + chr4 155362848 155363308 chr4,155362848,155364451,+,L1M4a1,LINE,L1,170,2031,-548,155362679,155364999 +5 + chr4 155367247 155367531 chr4,155367107,155367554,+,MLT1C,LTR,ERVL-MaLR,23,467,0,155367085,155367554 +5 + chr4 155379053 155379155 chr4,155379035,155379155,-,FLAM_C,SINE,Alu,-11,132,1,155379024,155379155 -2 - chr4 155379155 155379184 chr4,155379155,155379361,+,MIRb,SINE,MIR,61,256,-6,155379095,155379367 +4 + chr4 155381257 155381346 chr4,155381257,155381990,-,MLT-int,LTR,ERVL-MaLR,-771,964,246,155380486,155382235 -5 - chr4 155517174 155517292 chr4,155516989,155517292,-,AluJo,SINE,Alu,-14,298,1,155516975,155517292 -2 - chr4 155517386 155517459 chr4,155517386,155517887,-,L1MB1,LINE,L1,-1,6167,5690,155517385,155523576 -5 - chr4 155736180 155736298 chr4,155736180,155736298,-,Charlie7,DNA,hAT-Charlie,-2457,155,30,155733723,155736327 -6 - chr4 156585979 156586062 chr4,156585842,156586062,-,L1ME3E,LINE,L1,-474,5768,5538,156585368,156591599 -1 - chr4 156589232 156589416 chr4,156588992,156589416,+,MSTB1,LTR,ERVL-MaLR,4,432,0,156588989,156589416 +2 + chr4 156589416 156590010 chr4,156589416,156590010,+,L1MA9,LINE,L1,5767,6306,-6,156583650,156590016 +6 + chr4 156691998 156692366 chr4,156691995,156692366,-,LTR40c,LTR,ERVL,-38,427,2,156691957,156692367 -2 - chr4 156692444 156692472 chr4,156692444,156692472,+,(TC)n,Simple_repeat,Simple_repeat,1,28,0,156692444,156692472 +6 + chr4 156692485 156692512 chr4,156692485,156692512,+,(CA)n,Simple_repeat,Simple_repeat,1,27,0,156692485,156692512 +6 + chr4 156841359 156841419 chr4,156841162,156841502,+,THE1C,LTR,ERVL-MaLR,1,341,-34,156841162,156841536 +1 + chr4 156876435 156876544 chr4,156876392,156876544,-,MIR,SINE,MIR,0,262,102,156876392,156876645 -1 - chr4 156886810 156886862 chr4,156886810,156886998,+,MLT1L,LTR,ERVL-MaLR,405,607,-3,156886406,156887001 +5 + chr4 157572490 157572590 chr4,157572385,157572590,+,MIRb,SINE,MIR,3,216,-52,157572383,157572642 +1 + chr4 157574898 157575756 chr4,157574166,157575756,+,MER52A,LTR,ERV1,1,1755,0,157574166,157575756 +2 + chr4 157637687 157637826 chr4,157635820,157637826,-,SVA_F,Retroposon,SVA,0,1375,382,157635820,157638207 -1 - chr4 157637868 157637960 chr4,157637868,157637960,+,(CGG)n,Simple_repeat,Simple_repeat,1,85,0,157637868,157637960 +6 + chr4 157637948 157638001 chr4,157637948,157638001,+,(GCGCC)n,Simple_repeat,Simple_repeat,1,53,0,157637948,157638001 +6 + chr4 157638045 157638124 chr4,157638045,157639079,+,L1M1,LINE,L1,3182,4192,-3373,157634864,157642452 +4 + chr4 157666671 157666815 chr4,157666651,157666815,-,FRAM,SINE,Alu,-12,164,1,157666639,157666815 -2 - chr4 157666945 157666972 chr4,157666945,157666972,+,(CACA)n,Simple_repeat,Simple_repeat,1,27,0,157666945,157666972 +6 + chr4 157818277 157818433 chr4,157818277,157818433,+,MER5B,DNA,hAT-Charlie,6,178,0,157818272,157818433 -6 + chr4 157945827 157946026 chr4,157945827,157946026,-,MER58A,DNA,hAT-Charlie,0,224,26,157945827,157946051 +6 - chr4 157946488 157946642 chr4,157946488,157946651,-,L1ME4b,LINE,L1,-7,885,731,157946481,157947381 +1 - chr4 158109518 158109663 chr4,158109518,158109663,+,L2c,LINE,L2,3259,3417,-9,158106260,158109672 -6 + chr4 158109836 158110037 chr4,158109836,158110037,+,(AT)n,Simple_repeat,Simple_repeat,1,209,0,158109836,158110037 -6 + chr4 158111763 158111931 chr4,158111763,158112004,+,MIRb,SINE,MIR,7,266,-2,158111757,158112006 -1 + chr4 158179661 158179862 chr4,158179329,158179862,+,MamGypsy2-I,LTR,Gypsy,2877,3440,-726,158176453,158180588 +2 + chr4 158179880 158179926 chr4,158179880,158180045,+,MIRb,SINE,MIR,89,268,0,158179792,158180045 +5 + chr4 158199088 158199120 chr4,158199083,158199120,+,(ACAGAAG)n,Simple_repeat,Simple_repeat,1,39,0,158199083,158199120 +5 + chr4 158199105 158199120 chr4,158199083,158199120,+,(ACAGAAG)n,Simple_repeat,Simple_repeat,1,39,0,158199083,158199120 -5 + chr4 158199393 158199544 chr4,158199393,158199544,+,LTR104_Mam,LTR,Gypsy,1327,1489,-20,158198067,158199564 +5 + chr4 158199702 158200071 chr4,158199702,158200071,+,LTR65,LTR,ERV1,3,389,-280,158199700,158200351 +6 + chr4 158200071 158200486 chr4,158200071,158200486,+,MSTB1,LTR,ERVL-MaLR,1,432,0,158200071,158200486 +1 + chr4 158200324 158200442 chr4,158200071,158200486,+,MSTB1,LTR,ERVL-MaLR,1,432,0,158200071,158200486 -1 + chr4 158200486 158200760 chr4,158200486,158200760,+,LTR65,LTR,ERV1,390,669,0,158200097,158200760 +6 + chr4 158201412 158201936 chr4,158201406,158201936,+,MLT1F,LTR,ERVL-MaLR,8,548,0,158201399,158201936 +2 + chr4 158201937 158202241 chr4,158201937,158202241,+,L2a,LINE,L2,2830,3196,-230,158199108,158202471 +6 + chr4 158202241 158202278 chr4,158202241,158202278,+,(AC)n,Simple_repeat,Simple_repeat,1,37,0,158202241,158202278 +6 + chr4 158202278 158202476 chr4,158202278,158202476,+,L2a,LINE,L2,3197,3422,-4,158199082,158202480 +6 + chr4 158494926 158495056 chr4,158494762,158495077,+,AluJb,SINE,Alu,1,307,-5,158494762,158495082 -3 + chr4 159666503 159666658 chr4,159665418,159666904,-,L1MDa,LINE,L1,-4880,1753,3,159660538,159666906 +5 - chr4 159745739 159745808 chr4,159745739,159746376,-,Charlie25,DNA,hAT-Charlie,-882,1642,961,159744857,159747336 +2 - chr4 159777688 159777708 chr4,159777688,159777708,+,(TTG)n,Simple_repeat,Simple_repeat,1,20,0,159777688,159777708 -6 + chr4 160539254 160539373 chr4,160539166,160539373,-,MIRb,SINE,MIR,-46,222,3,160539120,160539375 -1 - chr4 160539576 160539840 chr4,160539576,160539911,+,MLT1A0,LTR,ERVL-MaLR,1,359,-6,160539576,160539917 +4 + chr4 160545369 160545481 chr4,160545330,160546060,-,LTR8A,LTR,ERV1,0,727,1,160545330,160546060 -3 - chr4 160554045 160554127 chr4,160553326,160554127,-,LTR1E,LTR,ERV1,0,804,2,160553326,160554128 -2 - chr4 160586621 160586655 chr4,160586621,160586655,+,A-rich,Low_complexity,Low_complexity,1,35,0,160586621,160586655 +6 + chr4 161379085 161379205 chr4,161379085,161379472,-,L1M4b,LINE,L1,-5920,568,146,161373165,161379617 -4 - chr4 161387935 161388033 chr4,161387935,161388033,-,L2c,LINE,L2,-15,3411,3293,161387920,161391325 -6 - chr4 162022778 162022909 chr4,162022778,162023083,+,L1PB4,LINE,L1,5848,6147,-9,162016931,162023092 +4 + chr4 162035210 162035399 chr4,162035162,162035933,-,L2a,LINE,L2,0,3426,2525,162035162,162038457 -3 - chr4 162041868 162042091 chr4,162041868,162042169,+,AluSp,SINE,Alu,1,302,-11,162041868,162042180 +4 + chr4 162043244 162043311 chr4,162043244,162045427,-,Tigger1,DNA,TcMar-Tigger,0,2418,230,162043244,162045656 -4 - chr4 162047548 162047567 chr4,162047548,162047844,+,AluSq,SINE,Alu,2,302,-11,162047547,162047855 +5 + chr4 162740668 162740906 chr4,162739358,162740906,+,LTR12C,LTR,ERV1,3,1578,-1,162739356,162740907 +1 + chr4 163108785 163108825 chr4,163108772,163108825,-,L2a,LINE,L2,0,3426,3374,163108772,163112198 -1 - chr4 163119405 163119458 chr4,163119405,163119458,-,Charlie4z,DNA,hAT-Charlie,-30,137,83,163119375,163119540 -6 - chr4 163119652 163119710 chr4,163119652,163119710,-,MER103C,DNA,hAT-Charlie,0,297,238,163119652,163119947 -6 - chr4 164801210 164801254 chr4,164801210,164801254,+,L3,LINE,CR1,1764,1807,-2292,164799447,164803546 +6 + chr4 164801909 164801938 chr4,164801909,164801938,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,164801909,164801938 +6 + chr4 164801951 164802249 chr4,164801951,164802249,+,AluY,SINE,Alu,1,298,-13,164801951,164802262 +6 + chr4 164802253 164802535 chr4,164802253,164802535,-,AluJo,SINE,Alu,-30,282,1,164802223,164802535 -6 - chr4 164802867 164803102 chr4,164802867,164803102,+,MIRb,SINE,MIR,20,262,0,164802848,164803102 +6 + chr4 164803291 164803430 chr4,164803291,164803430,+,AluJo,SINE,Alu,136,295,-17,164803156,164803447 +6 + chr4 164803512 164803795 chr4,164803512,164803817,+,AluSq2,SINE,Alu,1,305,-8,164803512,164803825 +5 + chr4 165684639 165684672 chr4,165684454,165684672,+,AmnSINE1,SINE,5S-Deu-L2,258,500,-75,165684197,165684747 +1 + chr4 165692176 165692258 chr4,165691886,165692258,-,MamRep605,LTR?,LTR?,-41,808,400,165691845,165692657 -2 - chr4 165754801 165754813 chr4,165754646,165754813,-,LTR33A,LTR,ERVL,-19,501,334,165754627,165755146 -2 - chr4 165754967 165754986 chr4,165754967,165755139,-,LTR41B,LTR,ERVL,-520,181,1,165754447,165755139 -4 - chr4 165761256 165761526 chr4,165761236,165761526,-,AluSx1,SINE,Alu,-14,298,9,165761222,165761534 -2 - chr4 165761526 165761633 chr4,165761526,165761633,+,MIR,SINE,MIR,151,249,-13,165761376,165761646 +6 + chr4 165761723 165761972 chr4,165761723,165761972,-,MIR,SINE,MIR,0,262,13,165761723,165761984 -6 - chr4 166388701 166388975 chr4,166388434,166388975,+,L2a,LINE,L2,2923,3424,-2,166385512,166388977 -5 + chr4 166389282 166389362 chr4,166389282,166389362,+,L4_C_Mam,LINE,RTE-X,233,309,-4829,166389050,166394191 -6 + chr4 166509558 166509610 chr4,166509542,166509725,+,MIRb,SINE,MIR,69,260,-8,166509474,166509733 -3 + chr4 166522906 166523022 chr4,166521100,166523942,+,HERVH-int,LTR,ERV1,1,2995,-4718,166521100,166528660 -3 + chr4 166526085 166526119 chr4,166526029,166526430,+,LTR7,LTR,ERV1,1,448,-2,166526029,166526432 -1 + chr4 167308238 167308281 chr4,167308238,167308281,+,(TTTCTC)n,Simple_repeat,Simple_repeat,1,45,0,167308238,167308281 -6 + chr4 167946674 167946843 chr4,167946498,167946919,-,MLT1C,LTR,ERVL-MaLR,0,467,12,167946498,167946930 +5 - chr4 168113229 168113301 chr4,168113148,168113301,-,MLT1A1,LTR,ERVL-MaLR,0,408,254,168113148,168113554 +4 - chr4 169203971 169204028 chr4,169203847,169204028,+,MIRb,SINE,MIR,23,253,-15,169203825,169204043 +2 + chr4 169219999 169220039 chr4,169219998,169220039,+,A-rich,Low_complexity,Low_complexity,1,41,0,169219998,169220039 +2 + chr4 169917761 169918051 chr4,169917722,169918051,-,AluYk4,SINE,Alu,0,311,1,169917722,169918051 +5 - chr4 169918051 169918135 chr4,169918051,169918135,-,LTR10A,LTR,ERV1,-518,91,2,169917533,169918136 +6 - chr4 169918435 169918660 chr4,169918435,169918660,-,Plat_L3,LINE,CR1,-2,3584,3360,169918433,169922019 +6 - chr4 169918805 169918942 chr4,169918805,169918942,-,L2c,LINE,L2,-1,3386,3252,169918804,169922193 +6 - chr4 169919014 169919693 chr4,169919014,169919693,+,MER4E1,LTR,ERV1,1,781,0,169919014,169919693 -6 + chr4 169919696 169919749 chr4,169919696,169919749,-,MIRb,SINE,MIR,-44,224,171,169919652,169919919 +6 - chr4 169919753 169920188 chr4,169919753,169920188,+,LTR7,LTR,ERV1,1,450,0,169919753,169920188 -6 + chr4 169920357 169920644 chr4,169920357,169920644,-,LTR81A,LTR,Gypsy,-999,351,38,169919358,169920681 +6 - chr4 169942706 169942843 chr4,169942504,169942954,+,MER39,LTR,ERV1,262,707,0,169942243,169942954 -3 + chr4 169945981 169946109 chr4,169945919,169946109,-,L2,LINE,L2,-1075,2344,2138,169944844,169948246 -1 - chr4 170372010 170372163 chr4,170371992,170372163,-,FAM,SINE,Alu,-12,173,1,170371980,170372163 -2 - chr4 170742469 170742673 chr4,170741921,170742673,-,MER21C,LTR,ERVL,-121,817,9,170741800,170742681 +5 - chr4 170742675 170742874 chr4,170742675,170742874,-,MIRb,SINE,MIR,-60,208,2,170742615,170742875 +6 - chr4 170742919 170743010 chr4,170742919,170743010,-,MIRb,SINE,MIR,-141,127,31,170742778,170743040 +6 - chr4 170743665 170743718 chr4,170743427,170744142,-,MER50,LTR,ERV1,-22,712,1,170743405,170744142 +1 - chr4 171055355 171055417 chr4,171053940,171056189,+,MER101-int,LTR,ERV1,1014,4500,-1831,171052927,171058020 +3 + chr4 171055828 171056189 chr4,171053940,171056189,+,MER101-int,LTR,ERV1,1014,4500,-1831,171052927,171058020 +2 + chr4 171056342 171057480 chr4,171056342,171057480,+,LTR49-int,LTR,ERV1,4586,5705,-626,171051757,171058106 +6 + chr4 171058108 171058190 chr4,171058108,171058190,-,L2c,LINE,L2,-174,3213,3130,171057934,171061319 -6 - chr4 171058645 171058737 chr4,171058645,171058737,+,LTR45C,LTR,ERV1,3,93,-446,171058643,171059183 +6 + chr4 171058737 171058777 chr4,171058737,171058777,+,(AAC)n,Simple_repeat,Simple_repeat,1,41,0,171058737,171058777 +6 + chr4 171058777 171059163 chr4,171058777,171059224,+,LTR45C,LTR,ERV1,94,539,0,171058684,171059224 +5 + chr4 171289475 171289640 chr4,171289160,171289640,+,L1MB5,LINE,L1,4547,4975,-1772,171284614,171291412 -5 + chr4 171289640 171289946 chr4,171289640,171289946,+,AluSx,SINE,Alu,1,308,-4,171289640,171289950 -6 + chr4 171289946 171290296 chr4,171289946,171290296,+,L1MB5,LINE,L1,4976,5338,-1409,171284971,171291705 -6 + chr4 171290309 171291347 chr4,171290309,171291347,+,L1MB5,LINE,L1,5694,6766,-9,171284616,171291356 -6 + chr4 171291419 171291461 chr4,171291419,171291461,+,(AT)n,Simple_repeat,Simple_repeat,1,44,0,171291419,171291461 -6 + chr4 171291478 171292235 chr4,171291478,171292235,+,L1ME1,LINE,L1,5360,6172,-7,171286119,171292242 -6 + chr4 171292308 171292426 chr4,171292308,171292426,-,L3,LINE,CR1,-3785,314,189,171288523,171292614 +6 - chr4 171292463 171292610 chr4,171292463,171292610,-,L2c,LINE,L2,-8,3379,3232,171292455,171295841 +6 - chr4 171294042 171294229 chr4,171294042,171294540,+,LTR33B,LTR,ERVL,26,501,-2,171294017,171294542 -2 + chr4 171298074 171298085 chr4,171297763,171298085,+,MER31-int,LTR,ERV1,2141,2482,-2736,171295623,171300821 -4 + chr4 171298092 171298267 chr4,171298092,171299531,+,LTR12C,LTR,ERV1,9,1579,0,171298084,171299531 -1 + chr4 171553065 171553218 chr4,171553065,171553218,+,MIR,SINE,MIR,32,190,-72,171553034,171553290 -6 + chr4 171563964 171564085 chr4,171563803,171564104,+,AluSx,SINE,Alu,1,298,-14,171563803,171564118 -3 + chr4 171635985 171636077 chr4,171635963,171636240,+,AluJr,SINE,Alu,2,275,-37,171635962,171636277 -3 + chr4 173144236 173144273 chr4,173144185,173144273,+,MamRep434,DNA,TcMar-Tigger,2,87,-339,173144184,173144612 -5 + chr4 173144712 173144962 chr4,173144712,173144962,-,AluJb,SINE,Alu,-27,285,35,173144685,173144996 +6 - chr4 173145135 173145511 chr4,173145135,173145684,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,173145135,173145684 +2 - chr4 173164293 173164353 chr4,173164252,173164655,-,L2c,LINE,L2,-3,3384,2972,173164249,173167626 +3 - chr4 173166187 173166299 chr4,173166187,173166495,+,AluJr,SINE,Alu,11,308,-4,173166177,173166499 -2 + chr4 173166645 173166710 chr4,173166612,173166710,+,MER5A,DNA,hAT-Charlie,1,103,-86,173166612,173166796 -4 + chr4 173166724 173166790 chr4,173166724,173166861,-,L3,LINE,CR1,-597,3502,3356,173166127,173170216 +2 - chr4 173169214 173169305 chr4,173169214,173169305,+,(CGCGGC)n,Simple_repeat,Simple_repeat,1,97,0,173169214,173169305 -6 + chr4 173363780 173364198 chr4,173363562,173365562,+,L1ME3B,LINE,L1,4012,6113,-129,173359551,173365691 -5 + chr4 173367895 173367964 chr4,173367831,173367964,-,L1ME3Cz,LINE,L1,-11,986,818,173367820,173368781 +5 - chr4 173367964 173368423 chr4,173367964,173368423,+,MER65C,LTR,ERV1,1,461,0,173367964,173368423 -6 + chr4 173368423 173368548 chr4,173368423,173368548,-,L1ME3Cz,LINE,L1,-180,817,693,173368243,173369240 +6 - chr4 173368582 173368875 chr4,173368582,173368875,-,AluSx,SINE,Alu,-15,297,5,173368567,173368879 +6 - chr4 173368914 173369192 chr4,173368914,173369192,-,Charlie5,DNA,hAT-Charlie,-83,2541,2234,173368831,173371425 +6 - chr4 173369208 173369309 chr4,173369208,173369309,-,Charlie5,DNA,hAT-Charlie,-2515,109,1,173366693,173369309 +6 - chr4 173369469 173369631 chr4,173369469,173369631,+,AluSx,SINE,Alu,129,296,-16,173369341,173369647 -6 + chr4 173468087 173468467 chr4,173468087,173468467,+,Tigger3a,DNA,TcMar-Tigger,1,347,-1,173468087,173468468 -6 + chr4 173468846 173468931 chr4,173468846,173468931,+,L2c,LINE,L2,3267,3375,-12,173465580,173468943 -6 + chr4 173537323 173537403 chr4,173537323,173537403,+,L2b,LINE,L2,3076,3156,-219,173534248,173537622 +5 + chr4 173537845 173538014 chr4,173537845,173538014,+,MIRb,SINE,MIR,62,241,-27,173537784,173538041 +6 + chr4 173582705 173582821 chr4,173582576,173582821,-,MIR,SINE,MIR,0,262,12,173582576,173582832 -2 - chr4 173583095 173583375 chr4,173583095,173583394,+,AluY,SINE,Alu,1,298,-13,173583095,173583407 +5 + chr4 173584805 173585015 chr4,173584805,173585015,+,L3b,LINE,CR1,5006,5228,-4,173579800,173585019 +5 + chr4 173585221 173585513 chr4,173585221,173585513,-,AluSz6,SINE,Alu,-20,292,2,173585201,173585514 -6 - chr4 173585608 173585728 chr4,173585608,173585739,+,FLAM_C,SINE,Alu,3,135,-8,173585606,173585747 +5 + chr4 173594144 173594344 chr4,173594144,173594344,+,MER58A,DNA,hAT-Charlie,30,224,0,173594115,173594344 +6 + chr4 173913072 173913252 chr4,173912802,173913396,-,Charlie1a,DNA,hAT-Charlie,-57,1398,707,173912745,173914102 +1 - chr4 173924207 173924251 chr4,173924183,173924251,+,(TTTA)n,Simple_repeat,Simple_repeat,1,70,0,173924183,173924251 -5 + chr4 173925935 173925957 chr4,173925935,173926090,+,MIRb,SINE,MIR,23,203,-65,173925913,173926155 +4 + chr4 173927867 173927990 chr4,173927721,173928014,+,AluJo,SINE,Alu,2,305,-7,173927720,173928021 -3 + chr4 173929225 173929419 chr4,173929186,173929419,+,MLT1J,LTR,ERVL-MaLR,173,471,-41,173929014,173929460 +2 + chr4 173982619 173982670 chr4,173982366,173982750,+,MSTB1,LTR,ERVL-MaLR,1,426,-6,173982366,173982756 -5 + chr4 173986693 173986726 chr4,173986630,173986726,-,MLT1J,LTR,ERVL-MaLR,-2,442,346,173986628,173987071 +4 - chr4 174094660 174094831 chr4,174094393,174094831,+,L1MD,LINE,L1,3842,4262,-1884,174090552,174096715 -5 + chr4 174094831 174095123 chr4,174094831,174095123,+,AluSz,SINE,Alu,1,293,-19,174094831,174095142 -6 + chr4 174095123 174095191 chr4,174095123,174095191,+,L1MD,LINE,L1,4263,4329,-1817,174090861,174097008 -6 + chr4 174095191 174095453 chr4,174095191,174095496,+,AluJr,SINE,Alu,2,290,-22,174095190,174095518 -2 + chr4 174096732 174096783 chr4,174096630,174097890,-,L1M2c,LINE,L1,-5486,1303,2,174091144,174097891 +5 - chr4 174097623 174097829 chr4,174096630,174097890,-,L1M2c,LINE,L1,-5486,1303,2,174091144,174097891 +5 - chr4 174135290 174135479 chr4,174135290,174135479,-,MIR,SINE,MIR,-34,228,41,174135256,174135519 +6 - chr4 174154622 174154637 chr4,174154622,174154667,+,AmnSINE2,SINE,tRNA-Deu,51,95,-263,174154572,174154930 -1 + chr4 174354854 174354883 chr4,174354623,174354883,-,AluSx1,SINE,Alu,-28,284,21,174354595,174354903 +5 - chr4 174354902 174354950 chr4,174354902,174355003,+,MIRb,SINE,MIR,92,199,-69,174354811,174355072 -2 + chr4 174370670 174370724 chr4,174370670,174370842,+,MER5A1,DNA,hAT-Charlie,1,165,-1,174370670,174370843 -2 + chr4 174524476 174524622 chr4,174524476,174524698,+,MIRb,SINE,MIR,2,239,-29,174524475,174524727 -2 + chr4 174536455 174536474 chr4,174536386,174536474,-,L1M5,LINE,L1,-454,5670,5558,174535932,174542031 +4 - chr4 174536640 174536786 chr4,174536474,174536786,+,AluJr,SINE,Alu,2,308,-4,174536473,174536790 +1 + chr4 174536474 174536590 chr4,174536474,174536786,+,AluJr,SINE,Alu,2,308,-4,174536473,174536790 -1 + chr4 174536786 174536881 chr4,174536786,174537018,-,L1M5,LINE,L1,-567,5557,5318,174536219,174542335 -4 - chr4 174540571 174540784 chr4,174540571,174540803,+,MIRb,SINE,MIR,17,250,-18,174540555,174540821 +5 + chr4 174979338 174979381 chr4,174979309,174979694,-,MLT2A1,LTR,ERVL,-55,389,1,174979254,174979694 +1 - chr4 175356220 175356341 chr4,175356065,175356371,+,AluSg7,SINE,Alu,1,306,-3,175356065,175356374 -3 + chr4 175402971 175403110 chr4,175402834,175403143,+,AluSx,SINE,Alu,2,311,-1,175402833,175403144 -1 + chr4 175458465 175458514 chr4,175458465,175458780,+,MER2,DNA,TcMar-Tigger,2,344,-1,175458464,175458781 -2 + chr4 175464623 175464723 chr4,175463769,175466680,-,HERVH-int,LTR,ERV1,-4726,2987,1,175459043,175466680 +3 - chr4 175466535 175466680 chr4,175463769,175466680,-,HERVH-int,LTR,ERV1,-4726,2987,1,175459043,175466680 +4 - chr4 175466682 175466697 chr4,175466682,175467186,-,LTR7,LTR,ERV1,-2,448,1,175466680,175467186 +1 - chr4 175795836 175795928 chr4,175795757,175796017,+,MLT1F2,LTR,ERVL-MaLR,176,420,-140,175795582,175796157 +3 + chr4 176308268 176308409 chr4,176308154,176308409,-,MLT1J,LTR,ERVL-MaLR,-218,294,1,176307936,176308409 +5 - chr4 176320227 176320324 chr4,176320227,176320324,+,(GGCCGG)n,Simple_repeat,Simple_repeat,1,98,0,176320227,176320324 -6 + chr4 176669667 176669709 chr4,176669667,176669939,+,Tigger13a,DNA,TcMar-Tigger,309,600,-171,176669359,176670110 +4 + chr4 176679700 176679750 chr4,176679649,176679805,-,MIR3,SINE,MIR,-21,187,13,176679628,176679817 -3 - chr4 176706103 176706145 chr4,176706103,176706146,+,(TAATA)n,Simple_repeat,Simple_repeat,1,44,0,176706103,176706146 +5 + chr4 176866614 176866650 chr4,176866589,176866650,-,MIRc,SINE,MIR,-138,130,70,176866451,176866719 +5 - chr4 176866876 176866913 chr4,176866876,176866935,+,L2,LINE,L2,1471,1529,-1890,176865406,176868825 -2 + chr4 176875176 176875242 chr4,176875027,176875242,-,MIRc,SINE,MIR,-29,239,18,176874998,176875259 +4 - chr4 176875737 176875796 chr4,176875737,176875796,+,MER115,DNA,hAT-Tip100,472,533,-160,176875266,176875956 +6 + chr4 176875823 176875853 chr4,176875823,176875862,+,MER115,DNA,hAT-Tip100,531,567,-126,176875293,176875988 +4 + chr4 176880067 176880081 chr4,176879974,176880081,-,MIR,SINE,MIR,-126,136,17,176879848,176880097 -2 - chr4 176880567 176880605 chr4,176880567,176880739,+,L1ME3,LINE,L1,5847,6028,-134,176874721,176880873 +5 + chr4 177248196 177248296 chr4,177247956,177248296,-,AluSz,SINE,Alu,0,312,1,177247956,177248296 +4 - chr4 177444979 177445443 chr4,177444910,177445732,+,LTR1A2,LTR,ERV1,7,837,0,177444904,177445732 +1 + chr4 177451475 177451590 chr4,177451457,177451611,-,FAM,SINE,Alu,-17,168,1,177451440,177451611 -3 - chr4 177596461 177596531 chr4,177596011,177596567,-,MLT1G,LTR,ERVL-MaLR,0,591,1,177596011,177596567 -3 - chr4 177623659 177623802 chr4,177623632,177623952,-,AluJr,SINE,Alu,-5,307,2,177623627,177623953 -3 - chr4 177676279 177676348 chr4,177676279,177676348,-,MIRc,SINE,MIR,0,268,196,177676279,177676543 -6 - chr4 177686742 177686863 chr4,177686742,177686994,+,MIR,SINE,MIR,5,262,0,177686738,177686994 -2 + chr4 177691041 177691068 chr4,177691041,177691328,+,L1MEg,LINE,L1,183,476,-5766,177690859,177697094 -1 + chr4 177728757 177728944 chr4,177728388,177728944,+,LTR18B,LTR,ERVL,1,614,0,177728388,177728944 +1 + chr4 177729638 177729664 chr4,177729388,177729684,+,AluSc5,SINE,Alu,1,296,-13,177729388,177729697 -5 + chr4 177732367 177732479 chr4,177732178,177732561,+,THE1D,LTR,ERVL-MaLR,1,381,0,177732178,177732561 +3 + chr4 177903697 177903948 chr4,177903697,177903991,+,AluSp,SINE,Alu,1,298,-15,177903697,177904006 -2 + chr4 177907762 177907804 chr4,177907762,177907804,+,MER5A,DNA,hAT-Charlie,130,171,-18,177907633,177907822 -6 + chr4 177966675 177966778 chr4,177966640,177966935,-,AluJb,SINE,Alu,-3,309,1,177966637,177966935 -3 - chr4 179389134 179389501 chr4,179388979,179389876,+,L2,LINE,L2,1169,2056,-1363,179387811,179391239 -5 + chr4 179465195 179465305 chr4,179465179,179465371,-,MIR,SINE,MIR,-1,261,58,179465178,179465428 +1 - chr4 180731164 180731199 chr4,180731063,180731199,+,MamTip2,DNA,hAT-Tip100,89,239,-66,180730975,180731265 -5 + chr4 180740844 180740946 chr4,180740746,180741073,-,Tigger3a,DNA,TcMar-Tigger,0,348,1,180740746,180741073 +3 - chr4 180758948 180759038 chr4,180758948,180759093,-,MIR,SINE,MIR,-26,236,73,180758922,180759165 +1 - chr4 181155613 181155734 chr4,181155537,181155734,+,MIRc,SINE,MIR,3,204,-4,181155535,181155738 -4 + chr4 181264945 181264976 chr4,181264836,181264976,-,Tigger19b,DNA,TcMar-Tigger,-1,549,403,181264835,181265378 +4 - chr4 181821564 181821629 chr4,181821564,181821644,+,MamRTE1,LINE,RTE-BovB,3353,3440,-372,181818212,181822016 -2 + chr4 181829924 181829973 chr4,181829778,181829996,+,LTR16C,LTR,ERVL,249,472,-17,181829530,181830013 -1 + chr4 181874438 181874501 chr4,181874218,181874501,-,L1ME2,LINE,L1,-3480,2839,2559,181870738,181877059 +5 - chr4 181975156 181975437 chr4,181975135,181975437,-,AluSz6,SINE,Alu,-10,302,1,181975125,181975437 +5 - chr4 181975437 181975564 chr4,181975437,181975564,-,L1PA17,LINE,L1,-362,5804,5685,181975075,181981248 +6 - chr4 181975571 181975813 chr4,181975571,181975813,-,L2a,LINE,L2,-607,2812,2574,181974964,181978386 +6 - chr4 181975820 181976120 chr4,181975820,181976120,-,MLT1B,LTR,ERVL-MaLR,-7,383,111,181975813,181976230 +6 - chr4 181976131 181976418 chr4,181976131,181976418,-,AluSz6,SINE,Alu,-24,288,1,181976107,181976418 +6 - chr4 181976476 181976536 chr4,181976476,181976544,-,MLT1B,LTR,ERVL-MaLR,-395,72,1,181976081,181976544 +2 - chr4 182084866 182085090 chr4,182084866,182085090,-,UCON31,Unknown,Unknown,-150,304,67,182084716,182085156 +1 - chr4 182144166 182144195 chr4,182144166,182144200,+,(CTCCT)n,Simple_repeat,Simple_repeat,1,35,0,182144166,182144200 -1 + chr4 182144436 182144479 chr4,182144436,182144479,+,(GGAGGCG)n,Simple_repeat,Simple_repeat,1,45,0,182144436,182144479 -1 + chr4 182144918 182144964 chr4,182144918,182144964,+,(CCCCGC)n,Simple_repeat,Simple_repeat,1,46,0,182144918,182144964 +6 + chr4 182144954 182144964 chr4,182144918,182144964,+,(CCCCGC)n,Simple_repeat,Simple_repeat,1,46,0,182144918,182144964 -4 + chr4 182697924 182697960 chr4,182697924,182697960,+,(ATGTTG)n,Simple_repeat,Simple_repeat,1,36,0,182697924,182697960 -6 + chr4 182707989 182708010 chr4,182707989,182708010,+,(T)n,Simple_repeat,Simple_repeat,1,21,0,182707989,182708010 -6 + chr4 182708028 182708042 chr4,182708028,182708242,+,MIR,SINE,MIR,1,246,-16,182708028,182708258 -1 + chr4 182773795 182773931 chr4,182773795,182774464,-,Kanga2_a,DNA,TcMar-Tc2,-155,733,14,182773640,182774477 +1 - chr4 182882047 182882202 chr4,182882047,182882202,-,MamSINE1,SINE,tRNA-RTE,-114,176,8,182881933,182882209 +6 - chr4 183095001 183095056 chr4,183095001,183095089,+,L2,LINE,L2,2654,2740,-679,183092348,183095768 -1 + chr4 183099189 183099199 chr4,183099189,183099258,+,GA-rich,Low_complexity,Low_complexity,1,70,0,183099189,183099258 -1 + chr4 183494938 183495012 chr4,183494879,183495012,-,AluSc,SINE,Alu,0,309,177,183494879,183495188 +5 - chr4 183504265 183504306 chr4,183504265,183504306,+,(CGCACGC)n,Simple_repeat,Simple_repeat,1,44,0,183504265,183504306 -6 + chr4 183504425 183504455 chr4,183504425,183504455,+,(CGGAG)n,Simple_repeat,Simple_repeat,1,32,0,183504425,183504455 -6 + chr4 184340756 184341038 chr4,184340734,184341038,-,AluSx1,SINE,Alu,-8,304,1,184340726,184341038 +5 - chr4 184341038 184341342 chr4,184341038,184341342,+,L1ME1,LINE,L1,6071,6336,-16,184334968,184341358 -6 + chr4 184341559 184341671 chr4,184341559,184341671,+,MIRc,SINE,MIR,2,127,-141,184341558,184341812 -6 + chr4 184341789 184342053 chr4,184341789,184342273,-,MLT1H,LTR,ERVL-MaLR,-13,536,37,184341776,184342309 +2 - chr4 184353593 184353977 chr4,184353593,184354081,+,MLT1G,LTR,ERVL-MaLR,1,499,-96,184353593,184354177 -1 + chr4 184365183 184365516 chr4,184365133,184365516,-,MSTB1,LTR,ERVL-MaLR,0,432,1,184365133,184365516 +5 - chr4 184365898 184365947 chr4,184365898,184365969,+,L2a,LINE,L2,3356,3425,-1,184362543,184365970 -2 + chr4 184368413 184368466 chr4,184368312,184368466,+,L1M5,LINE,L1,5381,5548,-631,184362932,184369097 -4 + chr4 184368466 184368799 chr4,184368466,184368799,-,MER34C_,LTR,ERV1,-238,347,7,184368228,184368805 +6 - chr4 184368802 184368949 chr4,184368802,184368949,-,L2a,LINE,L2,-263,3163,3016,184368539,184371964 +6 - chr4 184369010 184369112 chr4,184369010,184369112,+,MIR3,SINE,MIR,97,202,-6,184368914,184369118 -6 + chr4 184369454 184369506 chr4,184369454,184369506,+,GA-rich,Low_complexity,Low_complexity,1,54,0,184369454,184369506 -6 + chr4 184369506 184369812 chr4,184369506,184369812,+,AluSp,SINE,Alu,1,302,-11,184369506,184369823 -6 + chr4 184369812 184369870 chr4,184369812,184369870,+,GA-rich,Low_complexity,Low_complexity,55,112,0,184369758,184369870 -1 + chr4 184371692 184371807 chr4,184371692,184371993,+,AluJb,SINE,Alu,1,298,-14,184371692,184372007 -2 + chr4 184372339 184372480 chr4,184372265,184372680,-,BLACKJACK,DNA,hAT-Blackjack,-1867,1102,683,184370398,184373362 +5 - chr4 184376441 184376544 chr4,184376370,184376854,+,MLT1D,LTR,ERVL-MaLR,1,505,0,184376370,184376854 -3 + chr4 184379099 184379129 chr4,184379099,184379155,-,LTR88a,LTR,Gypsy?,0,816,760,184379099,184379914 +2 - chr4 184382179 184382306 chr4,184382179,184382738,+,LTR67B,LTR,ERVL,1,620,0,184382179,184382738 -1 + chr4 184475956 184475983 chr4,184475956,184475983,-,AluJr4,SINE,Alu,-16,296,278,184475940,184476260 -6 - chr4 184475983 184476287 chr4,184475983,184476287,+,AluSp,SINE,Alu,1,305,-8,184475983,184476295 +6 + chr4 184476287 184476418 chr4,184476287,184476418,-,AluJr4,SINE,Alu,-35,277,137,184476252,184476554 -6 - chr4 184476741 184476804 chr4,184476741,184476804,+,MamTip2,DNA,hAT-Tip100,5,71,-234,184476737,184477038 +6 + chr4 184477116 184477304 chr4,184477116,184477424,+,L2,LINE,L2,2717,3014,-405,184474400,184477829 +5 + chr4 184506643 184507226 chr4,184506643,184507226,+,MLT2F,LTR,ERVL,1,663,0,184506643,184507226 -5 + chr4 184507244 184507376 chr4,184507244,184507544,+,MLT1G3-int,LTR,ERVL-MaLR,22,339,-1070,184507223,184508614 -2 + chr4 184509237 184509292 chr4,184509010,184509292,+,MLT1G3,LTR,ERVL-MaLR,18,302,-293,184508993,184509585 -4 + chr4 184509288 184509325 chr4,184509288,184509406,+,MLT1G3,LTR,ERVL-MaLR,436,546,-9,184508853,184509415 -2 + chr4 184537502 184537554 chr4,184537190,184537727,+,L1M6,LINE,L1,43,613,-5883,184537148,184543610 -1 + chr4 184618889 184619055 chr4,184618587,184619055,-,MER4A1,LTR,ERV1,0,472,1,184618587,184619055 +5 - chr4 184619055 184619109 chr4,184619055,184619109,-,MER72,LTR,ERV1,-670,52,1,184618385,184619109 +6 - chr4 184624741 184625030 chr4,184624741,184625284,+,L2,LINE,L2,970,1540,-1879,184623772,184627163 -1 + chr4 184821044 184821125 chr4,184820934,184821125,+,MIR,SINE,MIR,2,227,-35,184820933,184821160 +2 + chr4 184844585 184844871 chr4,184844553,184844871,-,AluJo,SINE,Alu,-3,309,3,184844550,184844873 +5 - chr4 184846278 184846359 chr4,184846058,184846359,-,AluSz,SINE,Alu,-10,302,1,184846048,184846359 +5 - chr4 184855538 184855751 chr4,184855538,184855766,-,MLT1J1,LTR,ERVL-MaLR,-169,275,7,184855369,184855772 +1 - chr4 184984543 184984702 chr4,184984543,184984702,+,MIR3,SINE,MIR,2,165,-43,184984542,184984745 -6 + chr4 184985031 184985155 chr4,184985031,184985155,-,MIR3,SINE,MIR,-31,177,52,184985000,184985206 +6 - chr4 184985587 184986006 chr4,184985587,184986006,+,L2a,LINE,L2,2938,3404,-22,184982650,184986028 -6 + chr4 184986356 184986533 chr4,184986356,184986533,+,MIRb,SINE,MIR,63,231,-37,184986294,184986570 -6 + chr4 184987000 184987192 chr4,184987000,184987192,+,MER103C,DNA,hAT-Charlie,73,255,-42,184986928,184987234 -6 + chr4 184987239 184987371 chr4,184987239,184987371,-,MIRc,SINE,MIR,-89,141,6,184987150,184987376 +6 - chr4 184987488 184987860 chr4,184987488,184987860,+,(GTGTGT)n,Simple_repeat,Simple_repeat,1,374,0,184987488,184987860 -6 + chr4 184988039 184988127 chr4,184988039,184988508,+,MLT1D,LTR,ERVL-MaLR,1,505,0,184988039,184988508 -1 + chr4 185004603 185004720 chr4,185004603,185004720,-,MIR1_Amn,SINE,MIR,-97,133,3,185004506,185004722 -6 - chr4 185005041 185005163 chr4,185005041,185005163,-,L2b,LINE,L2,-9,3366,3235,185005032,185008397 -6 - chr4 185062673 185062816 chr4,185062673,185062834,+,MLT1J,LTR,ERVL-MaLR,3,169,-343,185062671,185063177 +5 + chr4 185063248 185063334 chr4,185063145,185063488,+,MLT1J,LTR,ERVL-MaLR,170,511,-1,185062976,185063489 +3 + chr4 185064446 185064564 chr4,185064424,185064726,-,AluJr,SINE,Alu,-12,300,1,185064412,185064726 -3 - chr4 185096482 185096575 chr4,185096467,185096575,-,FLAM_C,SINE,Alu,-197,105,1,185096270,185096575 -2 - chr4 185390584 185390730 chr4,185390546,185390730,-,Tigger13a,DNA,TcMar-Tigger,-523,248,47,185390023,185390776 -2 - chr4 185390791 185390928 chr4,185390791,185392080,-,L1MC3,LINE,L1,0,7785,6443,185390791,185398522 -5 - chr4 185471707 185471740 chr4,185471707,185471740,+,(CCG)n,Simple_repeat,Simple_repeat,1,35,0,185471707,185471740 +6 + chr4 185591907 185591936 chr4,185591907,185591936,+,(ACAAA)n,Simple_repeat,Simple_repeat,1,29,0,185591907,185591936 +6 + chr4 185592745 185592841 chr4,185592552,185592841,-,AluJb,SINE,Alu,-9,303,1,185592543,185592841 -2 - chr4 185918401 185918536 chr4,185918401,185918537,+,LTR33,LTR,ERVL,1,146,-369,185918401,185918906 +4 + chr4 185919352 185919460 chr4,185919352,185919564,+,MIRb,SINE,MIR,16,231,-37,185919337,185919601 +5 + chr4 186190064 186190243 chr4,186190064,186190243,-,L1PA17,LINE,L1,-3,6163,5973,186190061,186196215 +6 - chr4 186190259 186190346 chr4,186190259,186190346,-,MIR3,SINE,MIR,-21,187,86,186190238,186190431 +6 - chr4 186290869 186291032 chr4,186290869,186291248,-,L1ME4b,LINE,L1,-310,582,152,186290559,186291399 +2 - chr4 186424138 186424236 chr4,186424138,186424668,+,MLT1H1,LTR,ERVL-MaLR,2,545,-10,186424137,186424678 -2 + chr4 186426721 186426825 chr4,186426721,186426825,+,L2a,LINE,L2,3312,3416,-10,186423410,186426835 -6 + chr4 186427004 186427098 chr4,186427004,186427118,+,MER63A,DNA,hAT-Blackjack,1,114,-96,186427004,186427214 -2 + chr4 186890969 186891343 chr4,186889932,186891343,+,LTR12C,LTR,ERV1,2,1579,0,186889931,186891343 +1 + chr4 186892271 186892366 chr4,186892264,186892401,-,MamTip2,DNA,hAT-Tip100,-147,158,31,186892117,186892431 -5 - chr4 186892684 186892881 chr4,186892684,186892881,-,MIR,SINE,MIR,-35,227,37,186892649,186892917 -6 - chr4 186892930 186892983 chr4,186892930,186893087,-,MIRc,SINE,MIR,-8,260,106,186892922,186893192 -5 - chr4 186979490 186979579 chr4,186979446,186979579,-,MLT1N2,LTR,ERVL-MaLR,-8,554,422,186979438,186980000 +5 - chr4 186996376 186996438 chr4,186996376,186997448,+,Charlie1a,DNA,hAT-Charlie,1,1042,-413,186996376,186997861 -2 + chr4 187060864 187060930 chr4,187060864,187061064,+,L2c,LINE,L2,3182,3386,-1,187057683,187061065 +5 + chr4 187201986 187202085 chr4,187201551,187202085,-,MLT1F2,LTR,ERVL-MaLR,0,560,26,187201551,187202110 -1 - chr4 187203206 187203224 chr4,187203206,187203224,+,(TTTA)n,Simple_repeat,Simple_repeat,1,72,0,187203206,187203224 +6 + chr4 187203224 187203277 chr4,187203224,187203277,+,(AT)n,Simple_repeat,Simple_repeat,1,56,0,187203224,187203277 +6 + chr4 187203408 187203450 chr4,187203408,187203450,+,(TA)n,Simple_repeat,Simple_repeat,1,44,0,187203408,187203450 +6 + chr4 187208787 187208892 chr4,187208652,187208892,-,LTR88b,LTR,Gypsy?,-86,751,524,187208566,187209415 -2 - chr4 187209187 187209346 chr4,187209153,187209462,-,AluSc8,SINE,Alu,0,311,3,187209153,187209464 -5 - chr4 187304168 187304453 chr4,187304168,187304453,-,MLT1C,LTR,ERVL-MaLR,-2,503,181,187304166,187304633 +6 - chr4 187305113 187305328 chr4,187305113,187305328,-,MLT1C,LTR,ERVL-MaLR,-270,235,1,187304843,187305328 +6 - chr4 187307106 187307152 chr4,187306976,187307152,+,MLT1B,LTR,ERVL-MaLR,1,177,-197,187306976,187307349 -4 + chr4 187307228 187307269 chr4,187307228,187307376,-,Tigger1,DNA,TcMar-Tigger,0,2418,2271,187307228,187309646 +2 - chr4 187309637 187309682 chr4,187309637,187312222,-,Tigger1,DNA,TcMar-Tigger,0,2418,1,187309637,187312222 +1 - chr4 187371901 187371921 chr4,187371901,187372249,-,Tigger4b,DNA,TcMar-Tigger,-4,357,2,187371897,187372250 -5 - chr4 187413693 187413711 chr4,187413693,187413920,-,MIRb,SINE,MIR,-6,262,32,187413687,187413951 -4 - chr4 187532878 187533093 chr4,187532713,187533093,-,MER58D,DNA,hAT-Charlie,-1,385,6,187532712,187533098 +5 - chr4 187533143 187533203 chr4,187533143,187533409,-,MER5C,DNA,hAT-Charlie,-6,307,36,187533137,187533444 +2 - chr4 187557747 187557796 chr4,187557719,187557796,-,LTR33A,LTR,ERVL,-333,187,111,187557386,187557906 +4 - chr4 187557877 187557920 chr4,187557877,187557949,+,L2a,LINE,L2,3338,3426,0,187554540,187557949 -2 + chr4 187613833 187613999 chr4,187613833,187615335,+,L1M4,LINE,L1,3376,4911,-1235,187610458,187616570 +4 + chr4 187622642 187622740 chr4,187622438,187622815,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,187622438,187622815 +3 + chr4 187650467 187650661 chr4,187649194,187650752,+,ERV3-16A3_I-int,LTR,ERVL,3538,5104,-122,187645657,187650874 +1 + chr4 187672562 187672641 chr4,187671192,187672742,-,L1PB1,LINE,L1,-5036,1576,5,187666156,187672746 +1 - chr4 188143058 188143354 chr4,188143058,188143354,-,AluSc,SINE,Alu,-15,294,1,188143043,188143354 +6 - chr4 188161001 188161139 chr4,188161001,188161139,+,L1ME3A,LINE,L1,6025,6172,-1,188154977,188161140 +5 + chr4 188538138 188538552 chr4,188538138,188538566,+,MLT1C,LTR,ERVL-MaLR,5,434,-33,188538134,188538599 +5 + chr4 188680834 188680868 chr4,188680834,188680868,+,(CAGGCA)n,Simple_repeat,Simple_repeat,1,34,0,188680834,188680868 +6 + chr4 188740507 188740819 chr4,188740505,188740819,-,MLT2D,LTR,ERVL,-50,364,55,188740455,188740873 +5 - chr4 188740866 188740937 chr4,188740866,188740937,-,MLT2D,LTR,ERVL,-484,72,1,188740382,188740937 +6 - chr4 188740953 188741038 chr4,188740953,188741038,-,LTR41B,LTR,ERVL,-533,168,81,188740420,188741118 +6 - chr4 188741043 188741281 chr4,188741043,188741352,+,MLT1A0,LTR,ERVL-MaLR,1,353,-12,188741043,188741364 -1 + chr4 188757679 188757744 chr4,188757617,188757782,-,MIRc,SINE,MIR,-40,228,50,188757577,188757831 -1 - chr4 188776657 188776767 chr4,188776230,188776880,-,L1PB1,LINE,L1,-5574,1288,3,188770656,188776882 -1 - chr4 188777772 188778051 chr4,188777772,188778063,+,AluSx1,SINE,Alu,1,291,-21,188777772,188778084 -2 + chr4 188795239 188795574 chr4,188795239,188795574,+,MSTB,LTR,ERVL-MaLR,4,325,-101,188795236,188795675 -6 + chr4 188795662 188795832 chr4,188795662,188795832,+,L2c,LINE,L2,2264,2445,-974,188793399,188796806 -6 + chr4 188796118 188796343 chr4,188796118,188796343,+,L2c,LINE,L2,2932,3158,-229,188793187,188796572 -6 + chr4 188796449 188796590 chr4,188796449,188796590,-,MIR,SINE,MIR,-56,206,69,188796393,188796658 +6 - chr4 189001770 189001791 chr4,189001149,189001791,+,LTR9D,LTR,ERV1,1,645,0,189001149,189001791 -4 + chr4 189001791 189002075 chr4,189001791,189002766,-,L1PA10,LINE,L1,-5644,1959,217,188996147,189002982 +1 - chr4 189193100 189193206 chr4,189192915,189193206,-,AluY,SINE,Alu,-16,295,1,189192899,189193206 -1 - chr4 189193206 189193276 chr4,189193206,189193449,+,MLT1B,LTR,ERVL-MaLR,153,390,0,189193054,189193449 +4 + chr4 189291179 189291336 chr4,189291105,189291483,+,MSTA,LTR,ERVL-MaLR,1,428,0,189291105,189291483 -1 + chr4 189703881 189704068 chr4,189703830,189704068,+,L1M4b,LINE,L1,5890,6140,-866,189697941,189704934 -5 + chr4 189704068 189704490 chr4,189704068,189704843,+,L1ME4b,LINE,L1,62,886,-6,189704007,189704849 -1 + chr4 189809315 189809504 chr4,189809315,189809504,+,MLT1J1,LTR,ERVL-MaLR,21,206,-238,189809295,189809742 +6 + chr4 189881811 189881840 chr4,189881811,189881840,+,GA-rich,Low_complexity,Low_complexity,1,29,0,189881811,189881840 +6 + chr4 189881853 189881897 chr4,189881853,189882019,-,MIRb,SINE,MIR,-58,210,29,189881795,189882047 -4 - chr4 189937197 189937333 chr4,189937027,189937422,+,MSTA,LTR,ERVL-MaLR,1,425,-3,189937027,189937425 -3 + chr4 189939659 189939684 chr4,189939557,189939684,-,MIR,SINE,MIR,-4,258,120,189939553,189939803 +4 - chr5 213898 214189 chr5,213626,214189,+,L1MD1,LINE,L1,5420,5997,-245,208207,214434 -5 + chr5 214229 214396 chr5,214229,214396,+,L1MD1,LINE,L1,6071,6242,0,208159,214396 -6 + chr5 214747 215041 chr5,214747,215041,+,AluSc5,SINE,Alu,1,294,-15,214747,215056 -6 + chr5 216059 216335 chr5,216059,216335,-,AluJb,SINE,Alu,-10,302,1,216049,216335 +6 - chr5 216468 216669 chr5,216468,216669,-,MIRb,SINE,MIR,-52,216,2,216416,216670 +6 - chr5 269858 270207 chr5,269849,270236,+,L3,LINE,CR1,2836,3236,-863,267014,271099 -5 + chr5 472264 472303 chr5,472264,472303,+,G-rich,Low_complexity,Low_complexity,1,39,0,472264,472303 -6 + chr5 476128 476181 chr5,476128,476181,+,(CAGCC)n,Simple_repeat,Simple_repeat,1,54,0,476128,476181 +6 + chr5 476514 476550 chr5,476514,476550,+,(CCCCCAG)n,Simple_repeat,Simple_repeat,1,37,0,476514,476550 +6 + chr5 478600 478652 chr5,478600,478652,+,G-rich,Low_complexity,Low_complexity,1,53,0,478600,478652 +5 + chr5 524705 524727 chr5,524687,524727,+,G-rich,Low_complexity,Low_complexity,1,43,0,524687,524727 +1 + chr5 602639 602701 chr5,602639,602701,-,MLT1D,LTR,ERVL-MaLR,0,505,444,602639,603144 +6 - chr5 602805 602844 chr5,602805,602846,+,(CT)n,Simple_repeat,Simple_repeat,1,44,0,602805,602846 -2 + chr5 612197 612210 chr5,612197,612332,+,(CCGCC)n,Simple_repeat,Simple_repeat,1,141,0,612197,612332 -1 + chr5 956124 956182 chr5,955923,956182,-,L1M5,LINE,L1,-2024,4122,3862,953899,960043 -2 - chr5 956266 956303 chr5,956266,956303,+,MIR,SINE,MIR,108,144,-118,956159,956421 +6 + chr5 987180 987318 chr5,986867,987318,+,L1ME3,LINE,L1,3277,3758,-2388,983591,989706 -5 + chr5 987318 987695 chr5,987318,987695,+,L1PB,LINE,L1,4270,4646,-1500,983049,989195 -6 + chr5 987693 987826 chr5,987693,987826,-,L1P4,LINE,L1,-1369,4777,4642,986324,992467 +6 - chr5 987826 988076 chr5,987826,988076,+,GA-rich,Low_complexity,Low_complexity,1,253,0,987826,988076 -6 + chr5 988076 988231 chr5,988076,988231,-,MER57E1,LTR,ERV1,-202,170,2,987874,988232 +6 - chr5 988247 988845 chr5,988247,988845,+,L1ME3,LINE,L1,5225,5885,-277,983023,989122 -6 + chr5 989064 989198 chr5,989064,989198,+,AluSc8,SINE,Alu,1,133,-178,989064,989376 -6 + chr5 989198 989512 chr5,989198,989512,+,AluSg7,SINE,Alu,2,309,0,989197,989512 -6 + chr5 989512 989679 chr5,989512,989679,+,AluSc8,SINE,Alu,134,299,-12,989379,989691 -6 + chr5 997271 997308 chr5,996794,997467,+,MER72,LTR,ERV1,1,722,0,996794,997467 -1 + chr5 1006550 1006612 chr5,1006550,1006612,+,L1MB8,LINE,L1,6120,6178,0,1000431,1006612 +6 + chr5 1173141 1173404 chr5,1172767,1173404,-,LTR12_,LTR,ERV1,-3,685,1,1172764,1173404 +5 - chr5 1173404 1173478 chr5,1173404,1173505,+,AluSx,SINE,Alu,206,306,-6,1173199,1173511 -2 + chr5 1175308 1175375 chr5,1175308,1175375,+,MIR,SINE,MIR,104,170,-92,1175205,1175467 -6 + chr5 1176323 1176426 chr5,1176323,1176426,+,MLT1B,LTR,ERVL-MaLR,282,390,0,1176042,1176426 -6 + chr5 1363582 1363691 chr5,1363550,1363691,+,MER20B,DNA,hAT-Charlie,257,398,-385,1363294,1364076 -5 + chr5 1363847 1363953 chr5,1363847,1363953,+,MER20B,DNA,hAT-Charlie,672,783,0,1363176,1363953 -6 + chr5 1364657 1364691 chr5,1364657,1364800,+,L1MC,LINE,L1,4788,4951,-1195,1359870,1365995 -2 + chr5 1368320 1368395 chr5,1368017,1368563,+,L1MC1,LINE,L1,6626,7238,-2066,1361392,1370629 -1 + chr5 1379679 1380067 chr5,1379679,1380686,-,LTR12D,LTR,ERV1,0,1254,1,1379679,1380686 +1 - chr5 1383511 1383692 chr5,1383511,1383692,-,MLT1E2,LTR,ERVL-MaLR,-183,441,294,1383328,1383985 +6 - chr5 1383992 1384032 chr5,1383992,1384032,+,(AGCGCTG)n,Simple_repeat,Simple_repeat,1,40,0,1383992,1384032 -6 + chr5 1384529 1384728 chr5,1384529,1384728,-,MIR,SINE,MIR,-50,218,3,1384479,1384730 +6 - chr5 1546759 1546840 chr5,1546665,1546840,+,MIR,SINE,MIR,69,255,-7,1546597,1546847 -4 + chr5 1594931 1595071 chr5,1594931,1595071,-,AluJr4,SINE,Alu,-171,141,1,1594760,1595071 -6 - chr5 1610656 1611467 chr5,1610656,1611656,-,L1MD2,LINE,L1,-350,6009,4973,1610306,1616628 -5 - chr5 1725365 1725506 chr5,1725365,1725506,-,MER70B,LTR,ERVL,-424,154,5,1724941,1725510 -6 - chr5 1725565 1725594 chr5,1725565,1725594,+,(CTCCC)n,Simple_repeat,Simple_repeat,1,29,0,1725565,1725594 +6 + chr5 1726446 1726819 chr5,1726446,1726819,+,MLT1B,LTR,ERVL-MaLR,1,389,-1,1726446,1726820 +6 + chr5 1899851 1900043 chr5,1899851,1900043,-,L1MC5,LINE,L1,-9,9295,9098,1899842,1909140 -6 - chr5 1900043 1900073 chr5,1900043,1900073,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,30,0,1900043,1900073 +6 + chr5 1900073 1900140 chr5,1900073,1900140,-,L1MC5,LINE,L1,-207,9097,9022,1899866,1909161 -6 - chr5 1900140 1900272 chr5,1900140,1900272,-,AluJo,SINE,Alu,-180,132,1,1899960,1900272 -6 - chr5 1900272 1900341 chr5,1900272,1900341,-,L1MC5,LINE,L1,-283,9021,8934,1899989,1909274 -6 - chr5 1900351 1900493 chr5,1900351,1900541,-,L1MB7,LINE,L1,-1,6183,5987,1900350,1906527 -5 - chr5 1939772 1939941 chr5,1939689,1940136,-,L1MA9,LINE,L1,0,6312,5832,1939689,1945967 -1 - chr5 1968123 1968229 chr5,1968123,1968229,-,L3b,LINE,CR1,-227,5005,4900,1967896,1973128 -4 - chr5 1968590 1968621 chr5,1968295,1968621,-,L1HS,LINE,L1,-2832,3314,2989,1965463,1971609 -2 - chr5 1968618 1969013 chr5,1968618,1971481,+,L1HS,LINE,L1,3321,6155,0,1965298,1971481 +5 + chr5 2736662 2737017 chr5,2736619,2737017,+,Zaphod,DNA,hAT-Tip100,3595,4011,-20,2733025,2737037 -5 + chr5 2737280 2737321 chr5,2737280,2737385,-,L2b,LINE,L2,-300,3075,2970,2736980,2740354 +2 - chr5 2834619 2834654 chr5,2834422,2834654,-,MER5C1,DNA,hAT-Charlie,0,263,55,2834422,2834708 +4 - chr5 2834685 2835079 chr5,2834685,2835079,+,MLT1A1,LTR,ERVL-MaLR,1,401,-7,2834685,2835086 -6 + chr5 3418059 3418473 chr5,3418059,3418473,+,MLT1C,LTR,ERVL-MaLR,5,466,-1,3418055,3418474 -6 + chr5 3421077 3421164 chr5,3421077,3421164,-,MIRb,SINE,MIR,-62,206,116,3421015,3421279 +6 - chr5 3452816 3452851 chr5,3452788,3452851,-,MIR3,SINE,MIR,-3,205,142,3452785,3452992 -1 - chr5 3453705 3453787 chr5,3453692,3453827,-,MamGypLTR3a,LTR,Gypsy,-788,193,58,3452904,3453884 -3 - chr5 3496229 3496371 chr5,3496012,3496371,-,L1MD2,LINE,L1,-5294,1346,963,3490718,3497333 +5 - chr5 3496385 3496514 chr5,3496385,3496514,+,L1MEf,LINE,L1,96,219,-6181,3496290,3502695 -6 + chr5 3496783 3496857 chr5,3496783,3497067,+,L1MEf,LINE,L1,1419,1719,-4696,3495365,3501763 -2 + chr5 3497351 3497411 chr5,3497146,3497434,+,AluSq2,SINE,Alu,1,301,-12,3497146,3497446 -3 + chr5 4033713 4034053 chr5,4033153,4034053,-,L1PA10,LINE,L1,-7,6161,5226,4033146,4039278 +5 - chr5 4034050 4034119 chr5,4034050,4034204,+,L1P3,LINE,L1,3596,3747,-2396,4030455,4036600 -2 + chr5 4135749 4135845 chr5,4135749,4135902,+,MIR,SINE,MIR,4,161,-107,4135746,4136009 +4 + chr5 4143504 4143531 chr5,4143504,4143531,+,A-rich,Low_complexity,Low_complexity,1,29,0,4143504,4143531 +6 + chr5 4436850 4437166 chr5,4436799,4437166,-,THE1B,LTR,ERVL-MaLR,0,364,3,4436799,4437168 +5 - chr5 4437166 4438007 chr5,4437166,4438239,-,L1MA3,LINE,L1,-5806,1759,9,4431360,4438247 +2 - chr5 4438118 4438239 chr5,4437166,4438239,-,L1MA3,LINE,L1,-5806,1759,9,4431360,4438247 +4 - chr5 4438276 4438287 chr5,4438276,4438287,+,(GGAAGA)n,Simple_repeat,Simple_repeat,1,13,0,4438276,4438287 -6 + chr5 4438287 4438331 chr5,4438287,4438331,+,(AGAAGAAGG)n,Simple_repeat,Simple_repeat,1,44,0,4438287,4438331 -6 + chr5 4438331 4438369 chr5,4438331,4438369,+,(GGAAGA)n,Simple_repeat,Simple_repeat,2,38,0,4438330,4438369 -6 + chr5 4438416 4438538 chr5,4438416,4438538,+,L1MC3,LINE,L1,5214,5335,-829,4433203,4439367 -6 + chr5 4438538 4438831 chr5,4438538,4438831,+,AluSx1,SINE,Alu,3,295,-17,4438536,4438848 -6 + chr5 4438831 4439114 chr5,4438831,4439114,+,L1MC3,LINE,L1,5336,5571,-593,4433496,4439707 -6 + chr5 4439140 4439179 chr5,4439140,4439179,+,L1MD,LINE,L1,5528,5566,-2429,4433613,4441608 -6 + chr5 4439211 4440259 chr5,4439211,4440841,+,L1MC3,LINE,L1,5914,7556,-229,4433298,4441070 -1 + chr5 4451930 4452054 chr5,4451879,4452722,+,L1ME1,LINE,L1,4752,5601,-2567,4447128,4455289 -5 + chr5 4516325 4516361 chr5,4516325,4516361,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,4516325,4516361 +6 + chr5 4516412 4516523 chr5,4516412,4516523,-,MIRb,SINE,MIR,-73,195,71,4516339,4516593 -6 - chr5 4516537 4516661 chr5,4516537,4516661,+,MIR,SINE,MIR,13,139,-123,4516525,4516784 +6 + chr5 4522265 4522360 chr5,4522112,4522360,+,AluSx1,SINE,Alu,1,234,-78,4522112,4522438 -4 + chr5 4784871 4784964 chr5,4784803,4785155,-,THE1C,LTR,ERVL-MaLR,-15,360,1,4784788,4785155 +3 - chr5 4831861 4831931 chr5,4831861,4831992,-,MIRc,SINE,MIR,-46,222,72,4831815,4832063 +2 - chr5 4866016 4866200 chr5,4865938,4866200,-,MLT1A0,LTR,ERVL-MaLR,0,365,99,4865938,4866298 +4 - chr5 4866521 4866587 chr5,4866518,4866646,-,MLT1A0,LTR,ERVL-MaLR,-243,122,1,4866275,4866646 -1 - chr5 4874673 4874759 chr5,4874673,4875088,-,MLT1G3,LTR,ERVL-MaLR,-49,542,27,4874624,4875114 -5 - chr5 5034359 5034464 chr5,5034087,5034464,-,ERV3-16A3_I-int,LTR,ERVL,-751,4475,4096,5033336,5038559 -1 - chr5 5034133 5034267 chr5,5034087,5034464,-,ERV3-16A3_I-int,LTR,ERVL,-751,4475,4096,5033336,5038559 +1 - chr5 5049372 5049451 chr5,5049176,5049451,-,MER33,DNA,hAT-Charlie,-47,277,3,5049129,5049453 +4 - chr5 5057721 5057792 chr5,5057721,5057792,+,A-rich,Low_complexity,Low_complexity,1,75,0,5057721,5057792 +1 + chr5 5133868 5134070 chr5,5133841,5134089,+,MLT1H,LTR,ERVL-MaLR,32,291,-258,5133810,5134347 -3 + chr5 5175995 5176110 chr5,5174832,5176110,-,L1M1,LINE,L1,-6245,1320,14,5168587,5176123 +4 - chr5 6019174 6019238 chr5,6019174,6019238,+,L1MA7,LINE,L1,6226,6291,0,6012949,6019238 -6 + chr5 6019308 6019383 chr5,6019308,6019383,+,L3,LINE,CR1,2899,2976,-1123,6016410,6020506 -6 + chr5 6021008 6021152 chr5,6021008,6021152,-,MIR,SINE,MIR,0,268,119,6021008,6021270 +6 - chr5 6021472 6021979 chr5,6021472,6021979,-,MLT1F1,LTR,ERVL-MaLR,0,569,1,6021472,6021979 +6 - chr5 6022199 6022283 chr5,6022199,6022323,+,MLT1G3,LTR,ERVL-MaLR,1,117,-478,6022199,6022801 -1 + chr5 6030035 6030272 chr5,6030027,6030342,+,L1ME3A,LINE,L1,5815,6157,-16,6024213,6030358 +1 + chr5 6134629 6135238 chr5,6134629,6135238,-,MER76,LTR,ERVL,-6,685,3,6134623,6135240 -6 - chr5 6135391 6135402 chr5,6135391,6135402,+,(AT)n,Simple_repeat,Simple_repeat,1,21,-466,6135391,6135868 +6 + chr5 6135402 6135634 chr5,6135402,6135634,+,(ATTATAT)n,Simple_repeat,Simple_repeat,1,240,0,6135402,6135634 +6 + chr5 6135634 6135859 chr5,6135634,6135859,+,(AT)n,Simple_repeat,Simple_repeat,22,487,0,6135613,6135859 +6 + chr5 6136319 6136416 chr5,6136319,6136416,-,L2c,LINE,L2,-238,3149,3053,6136081,6139468 -6 - chr5 6136456 6137171 chr5,6136456,6137222,-,L1ME3,LINE,L1,-85,6077,5283,6136371,6142504 -5 - chr5 6310441 6310680 chr5,6310245,6310680,+,Tigger2a,DNA,TcMar-Tigger,3,434,0,6310243,6310680 -5 + chr5 6310759 6311041 chr5,6310759,6311041,+,MLT1C,LTR,ERVL-MaLR,37,306,-161,6310723,6311202 -6 + chr5 6311041 6311313 chr5,6311041,6311313,+,AluSx1,SINE,Alu,1,272,-40,6311041,6311353 -6 + chr5 6311313 6311472 chr5,6311313,6311472,+,MLT1C,LTR,ERVL-MaLR,307,467,0,6311007,6311472 -6 + chr5 6312158 6312211 chr5,6312158,6312211,+,MamRep605,LTR?,LTR?,441,492,-357,6311718,6312568 -6 + chr5 6312575 6312704 chr5,6312575,6312704,-,L1MA9,LINE,L1,-220,5944,5809,6312355,6318512 +6 - chr5 6312702 6312716 chr5,6312702,6312731,+,L1MA9,LINE,L1,6122,6151,-161,6306581,6312892 -2 + chr5 6339447 6339884 chr5,6339447,6339894,+,MLT1D,LTR,ERVL-MaLR,1,446,-59,6339447,6339953 -1 + chr5 6586415 6586473 chr5,6586415,6586473,+,(CCAGC)n,Simple_repeat,Simple_repeat,1,60,0,6586415,6586473 +6 + chr5 6586945 6587095 chr5,6586945,6587095,-,L2a,LINE,L2,-3,3423,3198,6586942,6590292 -6 - chr5 6587626 6587901 chr5,6587626,6587901,-,L1ME3G,LINE,L1,-765,5449,5272,6586861,6593172 -5 - chr5 6588089 6588225 chr5,6588089,6588225,+,AluSz6,SINE,Alu,1,134,-178,6588089,6588403 +6 + chr5 6588242 6588370 chr5,6588242,6588370,-,L1ME3G,LINE,L1,-2094,4120,3995,6586148,6592364 -6 - chr5 6671106 6671543 chr5,6670818,6671543,-,L1PB1,LINE,L1,-298,5853,5117,6670520,6676659 -1 - chr5 6671543 6671837 chr5,6671543,6671837,+,L1PB1,LINE,L1,5857,6150,-1,6665687,6671838 +6 + chr5 6672028 6672154 chr5,6672028,6672154,-,L3,LINE,CR1,-20,4079,3948,6672008,6676101 -6 - chr5 6672267 6672574 chr5,6672267,6672574,-,AluSz,SINE,Alu,-4,308,1,6672263,6672574 -6 - chr5 6673321 6674365 chr5,6673321,6674365,+,L1MC2,LINE,L1,5377,6333,-11,6667945,6674376 +6 + chr5 6702558 6702709 chr5,6702468,6702720,+,MLT1I,LTR,ERVL-MaLR,110,388,-23,6702359,6702743 -3 + chr5 6705108 6705263 chr5,6704702,6705263,+,L2,LINE,L2,2232,2868,-551,6702471,6705814 -5 + chr5 6705582 6705627 chr5,6705582,6705627,+,(TGGAGCA)n,Simple_repeat,Simple_repeat,1,47,0,6705582,6705627 -6 + chr5 6705840 6705944 chr5,6705840,6705944,-,MIR,SINE,MIR,-139,123,17,6705701,6705960 +6 - chr5 6706668 6707110 chr5,6706668,6707110,+,MLT1J2,LTR,ERVL-MaLR,1,429,-19,6706668,6707129 -6 + chr5 6707696 6707711 chr5,6707696,6707777,-,MER20,DNA,hAT-Charlie,-134,85,5,6707562,6707781 +1 - chr5 6768275 6768424 chr5,6768054,6768458,+,MSTB,LTR,ERVL-MaLR,2,426,0,6768053,6768458 +3 + chr5 6771901 6771953 chr5,6771901,6771991,-,MIR,SINE,MIR,-14,248,149,6771887,6772139 -5 - chr5 6779518 6779983 chr5,6779518,6779983,+,MLT1C,LTR,ERVL-MaLR,3,465,-2,6779516,6779985 +6 + chr5 6795880 6795970 chr5,6795872,6795970,-,L1MB4,LINE,L1,-376,5802,5689,6795496,6801658 -1 - chr5 6870743 6870858 chr5,6870012,6872770,-,Charlie3,DNA,hAT-Charlie,-6,2700,1,6870006,6872770 -3 - chr5 6933670 6933687 chr5,6933597,6933687,-,L1MEj,LINE,L1,-1,2159,2059,6933596,6935745 -1 - chr5 7036542 7036565 chr5,7036542,7036667,-,L2c,LINE,L2,0,3387,3274,7036542,7039940 -4 - chr5 7150804 7150842 chr5,7150575,7150842,+,LTR33A_,LTR,ERVL,251,531,0,7150325,7150842 +2 + chr5 7326404 7326561 chr5,7326243,7326561,+,LTR55,LTR,ERVL?,1,308,-240,7326243,7326801 +2 + chr5 7326563 7326609 chr5,7326563,7326660,+,LTR55,LTR,ERVL?,445,542,-6,7326119,7326666 +5 + chr5 7344579 7344794 chr5,7344346,7344794,+,MLT1C,LTR,ERVL-MaLR,1,466,-1,7344346,7344795 +1 + chr5 7347271 7347489 chr5,7347271,7347489,-,MIRb,SINE,MIR,-11,257,34,7347260,7347522 +6 - chr5 7364344 7364528 chr5,7363728,7364528,-,L1ME2,LINE,L1,-1,6163,5346,7363727,7369873 +4 - chr5 7369434 7369505 chr5,7369434,7369581,-,MIR,SINE,MIR,-21,241,63,7369413,7369643 +2 - chr5 7372873 7372886 chr5,7371288,7372886,+,(CCA)n,Simple_repeat,Simple_repeat,1,1599,0,7371288,7372886 -4 + chr5 7373204 7373473 chr5,7373204,7373473,+,AluSc8,SINE,Alu,1,286,-25,7373204,7373498 +6 + chr5 7379613 7379790 chr5,7379608,7380662,-,L1ME2,LINE,L1,-37,6127,4979,7379571,7385640 -5 - chr5 7924292 7924323 chr5,7924251,7924323,-,7SLRNA,srpRNA,srpRNA,-248,72,1,7924003,7924323 -1 - chr5 8143618 8143670 chr5,8143035,8143670,-,MER50,LTR,ERV1,-156,626,1,8142879,8143670 -1 - chr5 8143671 8143784 chr5,8143671,8143852,-,MLT1J2,LTR,ERVL-MaLR,-174,274,74,8143497,8143925 -5 - chr5 8444949 8445535 chr5,8444920,8445650,-,MER4A,LTR,ERV1,0,664,1,8444920,8445650 +1 - chr5 8446101 8446355 chr5,8445650,8446937,+,Tigger4,DNA,TcMar-Tigger,1435,2730,-1,8444216,8446938 -5 + chr5 8450743 8450920 chr5,8450402,8450920,+,ERVL-E-int,LTR,ERVL,2311,2850,-2817,8448092,8453737 +1 + chr5 8450943 8451644 chr5,8450943,8451822,+,ERVL-E-int,LTR,ERVL,2960,3870,-1797,8447984,8453619 +4 + chr5 8458952 8459090 chr5,8458952,8459090,-,MIR,SINE,MIR,-110,152,8,8458842,8459097 -6 - chr5 8461773 8461822 chr5,8461773,8461822,+,MLT1I,LTR,ERVL-MaLR,70,121,-327,8461704,8462149 +6 + chr5 8461913 8462075 chr5,8461913,8462075,+,MLT1I,LTR,ERVL-MaLR,227,401,-10,8461687,8462085 +6 + chr5 8462967 8463095 chr5,8462967,8463202,+,MER97a,DNA,hAT-Tip100,584,853,-37,8462384,8463239 +5 + chr5 8525179 8525344 chr5,8524876,8525689,+,MER21A,LTR,ERVL,32,930,-1,8524845,8525690 +1 + chr5 8614356 8614509 chr5,8614318,8614509,-,L2c,LINE,L2,-2,3385,3182,8614316,8617690 -1 - chr5 8614621 8614674 chr5,8614621,8614674,-,MLT2B3,LTR,ERVL,0,554,506,8614621,8615179 -6 - chr5 8614674 8614696 chr5,8614674,8614733,+,(TAGA)n,Simple_repeat,Simple_repeat,1,60,0,8614674,8614733 +5 + chr5 8669018 8669219 chr5,8668785,8669219,+,MER68,LTR,ERVL,117,563,0,8668669,8669219 -5 + chr5 8717684 8717883 chr5,8717570,8717887,+,(TAGTAG)n,Simple_repeat,Simple_repeat,1,320,0,8717570,8717887 -1 + chr5 8754869 8754919 chr5,8754617,8754919,-,AluY,SINE,Alu,-9,302,1,8754608,8754919 -1 - chr5 8785042 8785109 chr5,8784778,8785109,+,(TTTC)n,Simple_repeat,Simple_repeat,1,343,0,8784778,8785109 -5 + chr5 8785111 8785334 chr5,8785111,8785334,-,AluJb,SINE,Alu,-38,274,84,8785073,8785417 +6 - chr5 8840276 8841624 chr5,8840276,8841624,+,LTR12D,LTR,ERV1,1,1254,0,8840276,8841624 +6 + chr5 8841633 8841653 chr5,8841633,8841653,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,8841633,8841653 +6 + chr5 8868967 8869018 chr5,8868898,8869260,-,MLT1A0,LTR,ERVL-MaLR,-12,362,1,8868886,8869260 -3 - chr5 8880888 8881189 chr5,8879281,8881189,-,L1MA2,LINE,L1,-5594,1971,9,8873687,8881197 -2 - chr5 8881189 8881525 chr5,8881189,8881555,+,LTR24C,LTR,ERV1,254,635,0,8880936,8881555 +5 + chr5 8980495 8980659 chr5,8980495,8980726,+,MIR,SINE,MIR,8,240,-28,8980488,8980754 -1 + chr5 9001774 9001894 chr5,9000866,9002474,-,HERVH-int,LTR,ERV1,-4721,2992,1415,8996145,9003888 -1 - chr5 9040145 9040264 chr5,9040141,9040264,+,GA-rich,Low_complexity,Low_complexity,1,126,0,9040141,9040264 +2 + chr5 9040227 9040266 chr5,9040227,9040266,+,A-rich,Low_complexity,Low_complexity,1,40,0,9040227,9040266 +6 + chr5 9390937 9390961 chr5,9390884,9390961,-,MIRb,SINE,MIR,-81,187,114,9390803,9391074 -2 - chr5 9517366 9517522 chr5,9517366,9517522,+,MER5A1,DNA,hAT-Charlie,2,166,0,9517365,9517522 +6 + chr5 9546200 9546224 chr5,9546151,9546224,+,(CCG)n,Simple_repeat,Simple_repeat,1,78,0,9546151,9546224 +1 + chr5 9546224 9546293 chr5,9546224,9546293,+,(GCCCC)n,Simple_repeat,Simple_repeat,3,145,0,9546222,9546293 +1 + chr5 9645562 9645635 chr5,9645458,9645677,+,MLT1K,LTR,ERVL-MaLR,6,236,-359,9645453,9646036 -3 + chr5 9658424 9658458 chr5,9658416,9658555,-,MER5A,DNA,hAT-Charlie,-29,160,9,9658387,9658563 +1 - chr5 9712172 9712208 chr5,9712153,9712208,+,MER102c,DNA,hAT-Charlie,275,329,-2,9711879,9712210 -4 + chr5 9712313 9712391 chr5,9712313,9712713,+,MLT2C2,LTR,ERVL,1,408,-56,9712313,9712769 -2 + chr5 9854377 9854443 chr5,9853973,9854443,-,MLT1C,LTR,ERVL-MaLR,0,467,1,9853973,9854443 -1 - chr5 9862882 9862914 chr5,9862616,9862914,-,AluJo,SINE,Alu,-26,286,1,9862590,9862914 +5 - chr5 9867134 9867190 chr5,9867091,9867274,+,MER68,LTR,ERVL,54,237,-326,9867038,9867600 -3 + chr5 9870100 9870224 chr5,9870007,9870313,+,L2,LINE,L2,2055,2414,-1005,9867953,9871318 -3 + chr5 9883333 9883367 chr5,9882632,9883398,+,L1PA10,LINE,L1,5666,6352,-1,9876967,9883399 -3 + chr5 9883923 9884028 chr5,9883842,9884193,-,MSTD,LTR,ERVL-MaLR,0,396,81,9883842,9884273 +1 - chr5 9889804 9889937 chr5,9889804,9890212,-,L2b,LINE,L2,-835,2584,2149,9888969,9892360 -5 - chr5 9902652 9902753 chr5,9902463,9902947,+,L1MCa,LINE,L1,1,474,-6034,9902463,9908981 -1 + chr5 9903525 9903618 chr5,9903330,9903618,-,L1PB1,LINE,L1,0,6151,5861,9903330,9909478 +4 - chr5 9903618 9903820 chr5,9903618,9903820,-,L1PBa,LINE,L1,-5365,1497,1292,9898253,9905111 +6 - chr5 10057502 10057807 chr5,10057469,10057862,+,L2a,LINE,L2,2948,3382,-44,10054522,10057906 +5 + chr5 10137138 10137192 chr5,10136740,10137192,-,MLT1D,LTR,ERVL-MaLR,-8,497,1,10136732,10137192 -1 - chr5 10137193 10137266 chr5,10137193,10137426,-,L1ME3G,LINE,L1,-3587,2559,2305,10133606,10139730 -4 - chr5 10138033 10138345 chr5,10138033,10138345,+,AluY,SINE,Alu,2,310,-1,10138032,10138346 +6 + chr5 10195121 10195167 chr5,10195033,10195167,+,MamSINE1,SINE,tRNA-RTE,158,290,0,10194876,10195167 -5 + chr5 10195311 10195661 chr5,10195311,10195661,-,MLT1I,LTR,ERVL-MaLR,-3,408,48,10195308,10195708 +6 - chr5 10195697 10195845 chr5,10195697,10195845,-,MLT1I-int,LTR,ERVL-MaLR,-1,1386,1229,10195696,10197073 +6 - chr5 10195849 10196210 chr5,10195849,10196210,-,MLT1B,LTR,ERVL-MaLR,-2,388,8,10195847,10196217 +6 - chr5 10196216 10196807 chr5,10196216,10196807,-,MLT1B-int,LTR,ERVL-MaLR,-133,1254,633,10196083,10197439 +6 - chr5 10196807 10197381 chr5,10196807,10197381,+,MLT2B3,LTR,ERVL,1,554,0,10196807,10197381 -6 + chr5 10197381 10197596 chr5,10197381,10197596,-,MLT1B-int,LTR,ERVL-MaLR,-755,632,386,10196626,10197981 +6 - chr5 10197596 10197628 chr5,10197596,10197898,+,AluSx,SINE,Alu,7,310,-2,10197590,10197900 -1 + chr5 10203987 10204040 chr5,10203987,10204040,+,L2c,LINE,L2,3332,3384,-3,10200656,10204043 -1 + chr5 10249399 10249590 chr5,10249376,10249590,-,MIR,SINE,MIR,-32,236,18,10249344,10249607 -2 - chr5 10249897 10249915 chr5,10249897,10249934,+,(A)n,Simple_repeat,Simple_repeat,1,37,0,10249897,10249934 +5 + chr5 10264738 10264792 chr5,10264738,10264792,+,(TTGAAGACA)n,Simple_repeat,Simple_repeat,1,61,0,10264738,10264792 -6 + chr5 10265627 10265782 chr5,10265627,10265782,-,MIR,SINE,MIR,-87,175,6,10265540,10265787 +6 - chr5 10266608 10266884 chr5,10266608,10266884,-,MER2,DNA,TcMar-Tigger,-9,336,27,10266599,10266910 +6 - chr5 10269673 10269904 chr5,10269673,10269904,+,MLT1E2,LTR,ERVL-MaLR,1,253,-371,10269673,10270275 -6 + chr5 10269904 10269918 chr5,10269904,10270202,+,AluSx1,SINE,Alu,1,307,-5,10269904,10270207 -1 + chr5 10343054 10343131 chr5,10343054,10343271,-,MLT1D,LTR,ERVL-MaLR,-2,503,234,10343052,10343504 -5 - chr5 10353087 10353242 chr5,10353087,10353242,-,MamTip3,DNA,hAT-Tip100,-312,188,24,10352775,10353265 +6 - chr5 10481874 10481943 chr5,10481640,10481943,-,LTR40a,LTR,ERVL,-148,371,65,10481492,10482007 -2 - chr5 10481948 10482241 chr5,10481948,10482241,+,AluSz,SINE,Alu,1,298,-14,10481948,10482255 +6 + chr5 10493291 10493473 chr5,10493240,10493620,-,MLT1B,LTR,ERVL-MaLR,0,390,1,10493240,10493620 +5 - chr5 10493527 10493620 chr5,10493240,10493620,-,MLT1B,LTR,ERVL-MaLR,0,390,1,10493240,10493620 +5 - chr5 10493684 10493810 chr5,10493684,10493810,+,MER53,DNA,hAT,25,184,-9,10493660,10493819 -6 + chr5 10493736 10493828 chr5,10493736,10493828,-,MER53,DNA,hAT,-96,97,1,10493640,10493828 +6 - chr5 10495274 10495313 chr5,10495115,10495315,-,L1ME3,LINE,L1,0,6162,5940,10495115,10501254 +3 - chr5 10502183 10502217 chr5,10502183,10502217,+,(AAT)n,Simple_repeat,Simple_repeat,1,34,0,10502183,10502217 -6 + chr5 10502332 10502379 chr5,10502332,10502379,+,GA-rich,Low_complexity,Low_complexity,1,48,0,10502332,10502379 -6 + chr5 10504996 10505369 chr5,10504951,10505369,-,MLT1C,LTR,ERVL-MaLR,-8,459,1,10504943,10505369 +5 - chr5 10521833 10522084 chr5,10521833,10522379,+,MLT1G,LTR,ERVL-MaLR,5,585,-6,10521829,10522385 -1 + chr5 10541454 10541940 chr5,10541354,10541940,+,L1MC3,LINE,L1,7150,7760,-25,10534205,10541965 +1 + chr5 10541954 10541974 chr5,10541954,10541974,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,10541954,10541974 +6 + chr5 10542004 10542135 chr5,10542004,10542135,+,MLT1N2,LTR,ERVL-MaLR,428,561,-1,10541577,10542136 +6 + chr5 10542175 10542311 chr5,10542175,10542311,+,MIRc,SINE,MIR,83,226,-36,10542093,10542347 +6 + chr5 10542754 10543043 chr5,10542754,10543043,-,AluJo,SINE,Alu,-1,311,1,10542753,10543043 -6 - chr5 10628190 10628225 chr5,10628190,10628481,-,AluSq2,SINE,Alu,-23,290,1,10628167,10628481 +1 - chr5 10675323 10675401 chr5,10675323,10675401,+,MIRc,SINE,MIR,95,171,-91,10675229,10675492 -6 + chr5 10767624 10767775 chr5,10767482,10767854,+,MSTD,LTR,ERVL-MaLR,3,396,0,10767480,10767854 +1 + chr5 10775232 10775300 chr5,10775232,10775380,-,MER124,DNA?,DNA?,-113,284,137,10775119,10775516 +2 - chr5 12553890 12554038 chr5,12553773,12554057,+,AluYc,SINE,Alu,2,285,-14,12553772,12554071 -5 + chr5 12574857 12575033 chr5,12573943,12575033,-,LTR12C,LTR,ERV1,-902,677,2,12573041,12575034 -1 - chr5 12574504 12574637 chr5,12573943,12575033,-,LTR12C,LTR,ERV1,-902,677,2,12573041,12575034 +1 - chr5 12595697 12595778 chr5,12595643,12595946,-,AluJr,SINE,Alu,-4,308,1,12595639,12595946 -3 - chr5 12654647 12654715 chr5,12654204,12654715,-,L1ME3Cz,LINE,L1,-50,947,426,12654154,12655140 -2 - chr5 12654956 12655655 chr5,12654956,12655655,-,L1MEf,LINE,L1,0,2829,1986,12654956,12657640 -6 - chr5 12711198 12711299 chr5,12711176,12711504,-,L1PA10,LINE,L1,0,6168,5834,12711176,12717337 -3 - chr5 12804339 12804363 chr5,12804339,12804382,+,(ATAA)n,Simple_repeat,Simple_repeat,1,44,0,12804339,12804382 +5 + chr5 12914068 12914106 chr5,12913851,12914106,+,L1M4,LINE,L1,4349,4607,-1539,12909503,12915645 -5 + chr5 13860376 13860541 chr5,13860376,13860541,-,MER5B,DNA,hAT-Charlie,-16,162,2,13860360,13860542 -6 - chr5 13896589 13896687 chr5,13895640,13896687,+,L2a,LINE,L2,2288,3418,-8,13893353,13896695 +2 + chr5 14661808 14661939 chr5,14661631,14661939,-,AluSx3,SINE,Alu,-17,294,1,14661614,14661939 +5 - chr5 14661939 14662799 chr5,14661939,14662799,-,ERVL-B4-int,LTR,ERVL,-3571,2143,1088,14658368,14663886 +6 - chr5 14662801 14662928 chr5,14662801,14662928,+,ERVL-B4-int,LTR,ERVL,2020,2147,-3567,14660782,14666495 -6 + chr5 14662927 14663052 chr5,14662927,14663052,-,ERVL-B4-int,LTR,ERVL,-4573,1141,1012,14658354,14664063 +6 - chr5 14663052 14663492 chr5,14663052,14663492,-,MLT1C,LTR,ERVL-MaLR,0,467,7,14663052,14663498 +5 - chr5 14663646 14663971 chr5,14663646,14663971,+,L2,LINE,L2,2704,3066,-353,14660943,14664324 -6 + chr5 14872332 14872351 chr5,14872268,14872351,+,G-rich,Low_complexity,Low_complexity,1,87,0,14872268,14872351 +1 + chr5 15602189 15602233 chr5,15601858,15602233,+,MLT1C,LTR,ERVL-MaLR,51,433,-34,15601808,15602267 -5 + chr5 16141251 16141350 chr5,16141251,16141350,-,L2a,LINE,L2,-14,3412,3302,16141237,16144651 -6 - chr5 16185096 16185327 chr5,16185096,16185327,-,L2c,LINE,L2,-65,3322,3089,16185031,16188415 -6 - chr5 16185389 16185585 chr5,16185389,16185588,+,AluJb,SINE,Alu,107,304,-8,16185283,16185596 +5 + chr5 16384134 16384344 chr5,16383994,16384536,-,MLT1F,LTR,ERVL-MaLR,0,548,3,16383994,16384538 +3 - chr5 16428538 16428644 chr5,16428538,16428644,+,MamRTE1,LINE,RTE-BovB,147,249,-3563,16428392,16432207 +6 + chr5 16430391 16430604 chr5,16430246,16430607,+,MLT2D,LTR,ERVL,1,361,-53,16430246,16430660 -3 + chr5 16430816 16430924 chr5,16430816,16430924,+,L2c,LINE,L2,3281,3381,-6,16427536,16430930 -6 + chr5 16432226 16432324 chr5,16432226,16432324,-,MIRb,SINE,MIR,-148,120,20,16432078,16432343 -6 - chr5 16432335 16432387 chr5,16432335,16432387,+,L1M5,LINE,L1,5600,5651,-473,16426736,16432860 +6 + chr5 16432397 16432436 chr5,16432397,16433450,+,L1MC5a,LINE,L1,1488,2625,-152,16430910,16433602 +5 + chr5 16437374 16437437 chr5,16436001,16437437,+,LTR12C,LTR,ERV1,3,1579,0,16435999,16437437 -4 + chr5 16437437 16437839 chr5,16437437,16437839,-,HERV16-int,LTR,ERVL,-789,4437,4017,16436648,16441855 +6 - chr5 16437834 16437915 chr5,16437834,16438990,-,HERV16-int,LTR,ERVL,-2908,2318,1166,16434926,16440155 +2 - chr5 16439253 16439475 chr5,16438990,16439640,-,MER44C,DNA,TcMar-Tigger,0,733,1,16438990,16439640 +3 - chr5 16439886 16439974 chr5,16439642,16439974,-,MER2,DNA,TcMar-Tigger,0,345,1,16439642,16439974 +4 - chr5 16439974 16440081 chr5,16439974,16440365,-,HERV16-int,LTR,ERVL,-3811,1185,778,16436163,16441142 +1 - chr5 16621778 16621905 chr5,16621763,16621905,-,L2,LINE,L2,-895,2524,2369,16620868,16624273 -2 - chr5 16625415 16625756 chr5,16625310,16625799,+,LTR105_Mam,LTR,ERVL,3,528,-72,16625308,16625871 +3 + chr5 16629454 16629570 chr5,16629239,16629570,+,L1MC5a,LINE,L1,7526,7902,-140,16621714,16629710 +2 + chr5 16629570 16629617 chr5,16629570,16629617,+,(TG)n,Simple_repeat,Simple_repeat,1,47,0,16629570,16629617 +6 + chr5 16629617 16629745 chr5,16629617,16629745,+,L1MC5a,LINE,L1,7903,8040,-2,16621715,16629747 +6 + chr5 17107734 17107789 chr5,17107734,17108043,-,AluSp,SINE,Alu,-2,311,2,17107732,17108044 +1 - chr5 17130028 17130284 chr5,17130009,17130284,-,AluJr,SINE,Alu,-11,301,31,17129998,17130314 +5 - chr5 17130284 17131016 chr5,17130284,17131016,-,LTR12,LTR,ERV1,0,826,1,17130284,17131016 +6 - chr5 17131557 17131581 chr5,17131557,17131581,+,(AAT)n,Simple_repeat,Simple_repeat,1,24,0,17131557,17131581 -6 + chr5 17162469 17162565 chr5,17162381,17162782,-,MSTA,LTR,ERVL-MaLR,0,428,1,17162381,17162782 +3 - chr5 17216655 17216684 chr5,17216655,17216684,+,(TCTCC)n,Simple_repeat,Simple_repeat,1,30,0,17216655,17216684 -6 + chr5 17354702 17354803 chr5,17354702,17354803,+,MIRb,SINE,MIR,131,252,-16,17354572,17354819 +6 + chr5 17369333 17369389 chr5,17369333,17369514,+,Charlie7a,DNA,hAT-Charlie,3,192,-80,17369331,17369594 -2 + chr5 17375458 17375517 chr5,17375279,17375517,-,MamGypLTR2b,LTR,Gypsy,-17,905,556,17375262,17376072 +4 - chr5 17384843 17384927 chr5,17384555,17384927,+,L2,LINE,L2,1243,1664,-1755,17383313,17386682 -4 + chr5 17384951 17385440 chr5,17384951,17385501,+,MLT1F2,LTR,ERVL-MaLR,4,558,-2,17384948,17385503 -2 + chr5 17444010 17444022 chr5,17443982,17444022,-,MER20B,DNA,hAT-Charlie,-315,468,433,17443667,17444454 -1 - chr5 17477615 17477641 chr5,17477471,17477641,+,MER45A,DNA,hAT-Tip100,5,177,-1,17477467,17477642 +2 + chr5 17684584 17684687 chr5,17684343,17684945,+,MER6A,DNA,TcMar-Tigger,1,583,-22,17684343,17684967 +1 + chr5 17768894 17768984 chr5,17768784,17768990,+,MIRc,SINE,MIR,27,244,-24,17768758,17769014 +3 + chr5 17850259 17850320 chr5,17850150,17850320,-,L2b,LINE,L2,-38,3388,3229,17850112,17853548 -1 - chr5 17873020 17873086 chr5,17872925,17873143,-,L1MEc,LINE,L1,-6130,270,32,17866795,17873174 -3 - chr5 17919228 17919295 chr5,17919225,17919295,+,L1PA10,LINE,L1,6097,6168,0,17913129,17919295 +1 + chr5 17929592 17929636 chr5,17929592,17929778,+,MIRb,SINE,MIR,26,259,-9,17929567,17929787 +5 + chr5 17955694 17955857 chr5,17955472,17955884,+,MSTB,LTR,ERVL-MaLR,1,426,0,17955472,17955884 +5 + chr5 18745998 18746014 chr5,18745563,18746014,-,HERV17-int,LTR,ERV1,-8164,462,17,18737399,18746030 +4 - chr5 18746065 18746173 chr5,18746065,18746356,-,LTR12F,LTR,ERV1,-98,682,237,18745967,18746592 +1 - chr5 18965861 18965925 chr5,18965778,18965925,-,MLT1D-int,LTR,ERVL-MaLR,-1210,161,2,18964568,18965926 +5 - chr5 18965928 18966207 chr5,18965928,18966207,-,MLT1D,LTR,ERVL-MaLR,-2,503,202,18965926,18966408 +6 - chr5 18966219 18966231 chr5,18966219,18966310,+,MLT1B,LTR,ERVL-MaLR,300,390,0,18965920,18966310 -2 + chr5 19035197 19035343 chr5,19035143,19035343,-,LTR65,LTR,ERV1,-257,412,197,19034886,19035539 +5 - chr5 19035343 19035467 chr5,19035343,19035467,+,(AGAA)n,Simple_repeat,Simple_repeat,1,126,0,19035343,19035467 -6 + chr5 19035467 19035585 chr5,19035467,19035585,-,LTR65,LTR,ERV1,-505,164,43,19034962,19035627 +6 - chr5 19035633 19035945 chr5,19035633,19035945,-,L2a,LINE,L2,-151,3275,2927,19035482,19038871 +5 - chr5 19035999 19036033 chr5,19035999,19036152,-,L2a,LINE,L2,-545,2874,2717,19035454,19038868 +2 - chr5 19038680 19038694 chr5,19038373,19038694,-,MER2,DNA,TcMar-Tigger,-3,342,1,19038370,19038694 +4 - chr5 19142064 19142346 chr5,19142064,19143334,-,LTR12E,LTR,ERV1,0,1322,1,19142064,19143334 +1 - chr5 20611840 20611985 chr5,20611803,20612187,+,MLT1E1A,LTR,ERVL-MaLR,283,680,0,20611521,20612187 +1 + chr5 20612799 20613044 chr5,20612799,20613430,-,LTR12,LTR,ERV1,0,826,1,20612799,20613430 +2 - chr5 20616405 20616480 chr5,20616271,20616564,+,THE1B,LTR,ERVL-MaLR,70,364,0,20616202,20616564 +1 + chr5 20660712 20660768 chr5,20660572,20661256,-,Tigger17c,DNA,TcMar-Tigger,-499,689,3,20660073,20661258 -3 - chr5 20670567 20670577 chr5,20670346,20670577,+,HAL1ME,LINE,L1,1371,1630,-835,20668976,20671412 +2 + chr5 20736955 20737101 chr5,20736774,20737182,+,MSTA,LTR,ERVL-MaLR,1,428,0,20736774,20737182 +3 + chr5 20814337 20814398 chr5,20814337,20818394,+,L1P3,LINE,L1,8,4095,-2366,20814330,20820760 +4 + chr5 20879366 20879458 chr5,20879026,20879812,+,L1ME3,LINE,L1,5134,5965,-197,20873893,20880009 +5 + chr5 20895483 20895567 chr5,20895294,20895651,+,THE1C,LTR,ERVL-MaLR,1,375,0,20895294,20895651 +3 + chr5 20932883 20932980 chr5,20932751,20933001,+,MLT2B1,LTR,ERVL,165,453,-67,20932587,20933068 +3 + chr5 20936305 20936712 chr5,20936305,20936725,-,MER70A,LTR,ERVL,-1,471,22,20936304,20936746 -4 - chr5 20936826 20936984 chr5,20936826,20937342,+,MLT1J1-int,LTR,ERVL-MaLR,837,1381,-6,20935990,20937348 +4 + chr5 20937179 20937257 chr5,20936826,20937342,+,MLT1J1-int,LTR,ERVL-MaLR,837,1381,-6,20935990,20937348 +3 + chr5 21324472 21324532 chr5,21324472,21324532,+,(GTTTCT)n,Simple_repeat,Simple_repeat,1,60,0,21324472,21324532 -6 + chr5 21324790 21324922 chr5,21324790,21324922,-,L2a,LINE,L2,-33,3393,3253,21324757,21328174 +6 - chr5 21325536 21325771 chr5,21325536,21325771,-,MER2,DNA,TcMar-Tigger,0,345,136,21325536,21325906 +6 - chr5 21326710 21326806 chr5,21326710,21326806,+,MER5A1,DNA,hAT-Charlie,59,166,0,21326652,21326806 -6 + chr5 21327314 21327353 chr5,21327314,21327353,+,(ATATTCA)n,Simple_repeat,Simple_repeat,1,40,0,21327314,21327353 -6 + chr5 21327736 21327786 chr5,21327736,21327786,+,A-rich,Low_complexity,Low_complexity,1,51,0,21327736,21327786 -6 + chr5 21328749 21328911 chr5,21328749,21328911,+,L1M5,LINE,L1,3816,3983,-2163,21324934,21331074 -6 + chr5 21329566 21329630 chr5,21329228,21329710,+,MLT1C,LTR,ERVL-MaLR,1,467,0,21329228,21329710 -3 + chr5 21341224 21341375 chr5,21341224,21342284,+,LTR12E,LTR,ERV1,1,1167,-155,21341224,21342439 -1 + chr5 21493470 21493576 chr5,21493470,21493576,+,L2c,LINE,L2,3044,3167,-220,21490427,21493796 +6 + chr5 21493645 21493826 chr5,21493645,21493826,-,AluJr,SINE,Alu,-7,305,138,21493638,21493963 -6 - chr5 21493826 21494119 chr5,21493826,21494119,-,AluSg,SINE,Alu,-16,294,1,21493810,21494119 -6 - chr5 21494119 21494242 chr5,21494119,21494242,-,AluJr,SINE,Alu,-175,137,2,21493944,21494243 -6 - chr5 21569755 21569968 chr5,21569680,21569968,+,L1MC5,LINE,L1,8949,9268,-36,21560732,21570004 +1 + chr5 21616262 21616597 chr5,21616007,21616837,+,MER21C,LTR,ERVL,8,928,-10,21616000,21616847 +1 + chr5 21623971 21624110 chr5,21622630,21624564,+,MER4B-int,LTR,ERV1,4452,6531,-227,21618179,21624791 +3 + chr5 21774399 21774509 chr5,21774041,21774592,+,MLT2A2,LTR,ERVL,1,453,0,21774041,21774592 +3 + chr5 21779258 21779364 chr5,21779233,21779364,-,FLAM_A,SINE,Alu,-10,132,1,21779223,21779364 -2 - chr5 21779364 21779382 chr5,21779364,21779382,+,(TTTA)n,Simple_repeat,Simple_repeat,2,20,0,21779363,21779382 +6 + chr5 22141166 22141252 chr5,22141140,22141444,-,L2b,LINE,L2,0,3387,3082,22141140,22144525 +3 - chr5 22141409 22141444 chr5,22141140,22141444,-,L2b,LINE,L2,0,3387,3082,22141140,22144525 +4 - chr5 23951348 23951803 chr5,23951094,23952511,+,LTR12C,LTR,ERV1,3,1579,0,23951092,23952511 +1 + chr5 23975997 23976050 chr5,23973656,23976640,-,L1M4b,LINE,L1,-2405,4601,1648,23971251,23978287 -3 - chr5 23977781 23977922 chr5,23977687,23978315,+,HERVIP10B3-int,LTR,ERV1,1,578,-7025,23977687,23985340 +3 + chr5 23979937 23980015 chr5,23979308,23980015,+,MER50,LTR,ERV1,1,714,-20,23979308,23980035 +5 + chr5 23980057 23980561 chr5,23980057,23980561,+,L1PB,LINE,L1,2793,3303,-2843,23977265,23983404 +6 + chr5 24177837 24178263 chr5,24177817,24178271,+,LTR33B,LTR,ERVL,5,479,-24,24177813,24178295 +5 + chr5 24352584 24352646 chr5,24352584,24352646,+,(AT)n,Simple_repeat,Simple_repeat,1,67,0,24352584,24352646 -6 + chr5 24353411 24353431 chr5,24353045,24353431,+,MER89,LTR,ERV1,2,460,-99,24353044,24353530 -4 + chr5 24554019 24554131 chr5,24554019,24554131,+,GA-rich,Low_complexity,Low_complexity,1,115,0,24554019,24554131 +6 + chr5 24554135 24554187 chr5,24554135,24554323,+,MLT1F,LTR,ERVL-MaLR,349,543,-5,24553787,24554328 +4 + chr5 24611820 24612142 chr5,24611615,24612142,+,MLT1F2,LTR,ERVL-MaLR,11,560,0,24611605,24612142 +2 + chr5 24835280 24835310 chr5,24834905,24835310,-,Charlie1a,DNA,hAT-Charlie,-6,1449,1026,24834899,24836335 +5 - chr5 24835575 24835912 chr5,24835575,24835912,-,MER61A,LTR,ERV1,0,341,1,24835575,24835912 +6 - chr5 24836073 24837126 chr5,24836073,24837126,-,Charlie1a,DNA,hAT-Charlie,-412,1043,1,24835661,24837126 +6 - chr5 24882004 24882302 chr5,24882004,24882312,-,L1MC3,LINE,L1,-123,7662,7342,24881881,24889653 +2 - chr5 24885379 24885461 chr5,24885379,24885571,+,L3,LINE,CR1,1501,1700,-2399,24883879,24887970 -1 + chr5 25126305 25126353 chr5,25125811,25126353,-,L1MC4,LINE,L1,-956,7086,6448,25124855,25132800 +5 - chr5 25136423 25136445 chr5,25136423,25136495,+,LTR67B,LTR,ERVL,54,125,-495,25136370,25136990 -2 + chr5 25162230 25162269 chr5,25162061,25162542,-,MER4-int,LTR,ERV1,-5912,686,76,25156149,25162617 +3 - chr5 25167162 25167191 chr5,25166866,25168051,-,Tigger3b,DNA,TcMar-Tigger,-1,1230,1,25166865,25168051 +3 - chr5 25218973 25219049 chr5,25218973,25219071,+,L1PREC2,LINE,L1,6682,6780,0,25212292,25219071 -5 + chr5 25224783 25224917 chr5,25224727,25224917,-,ERV3-16A3_I-int,LTR,ERVL,-1123,4103,3906,25223604,25228822 +4 - chr5 25244638 25244676 chr5,25244367,25244676,+,LTR16C,LTR,ERVL,173,489,0,25244195,25244676 -4 + chr5 25284765 25284832 chr5,25284765,25284836,+,Tigger19b,DNA,TcMar-Tigger,91,175,-375,25284675,25285211 -2 + chr5 25298979 25299060 chr5,25298168,25300599,-,L1MC1,LINE,L1,-9,6324,3892,25298159,25304490 -1 - chr5 25298528 25298612 chr5,25298168,25300599,-,L1MC1,LINE,L1,-9,6324,3892,25298159,25304490 +1 - chr5 25302218 25302270 chr5,25302168,25302270,-,MLT1J-int,LTR,ERVL-MaLR,-438,949,847,25301730,25303116 -2 - chr5 25305899 25306012 chr5,25305880,25306012,-,FLAM_C,SINE,Alu,-10,133,1,25305870,25306012 -2 - chr5 25319834 25319859 chr5,25319815,25319859,+,A-rich,Low_complexity,Low_complexity,1,44,0,25319815,25319859 +1 + chr5 25320934 25321020 chr5,25320934,25321020,+,L2b,LINE,L2,3288,3373,-2,25317647,25321022 +6 + chr5 25413562 25413834 chr5,25413562,25413834,-,AluSx,SINE,Alu,-22,290,2,25413540,25413835 +6 - chr5 25422730 25422840 chr5,25422475,25422840,-,L1PA8,LINE,L1,0,6172,5818,25422475,25428657 +4 - chr5 25445822 25445925 chr5,25445822,25446221,-,LTR7,LTR,ERV1,-2,448,1,25445820,25446221 +1 - chr5 25716494 25716543 chr5,25716494,25716543,+,(TGTT)n,Simple_repeat,Simple_repeat,1,49,0,25716494,25716543 +6 + chr5 26382519 26382618 chr5,26381967,26383023,+,MLT1A1-int,LTR,ERVL-MaLR,667,1735,0,26381301,26383023 -5 + chr5 26384089 26384132 chr5,26384089,26384132,+,(TCTTCAG)n,Simple_repeat,Simple_repeat,1,45,0,26384089,26384132 -6 + chr5 26399677 26399819 chr5,26399074,26404708,-,HERVL-int,LTR,ERVL,0,5654,1,26399074,26404708 +1 - chr5 26711932 26712026 chr5,26711932,26712167,-,MLT1I,LTR,ERVL-MaLR,-148,263,1,26711784,26712167 +2 - chr5 26749873 26749997 chr5,26749873,26750181,+,(CTTCTC)n,Simple_repeat,Simple_repeat,1,318,0,26749873,26750181 -1 + chr5 27423501 27423601 chr5,27423490,27423633,+,AluJb,SINE,Alu,164,309,-3,27423327,27423636 -3 + chr5 27436157 27436285 chr5,27436157,27436285,-,LTR31,LTR,ERV1,0,619,491,27436157,27436775 +6 - chr5 27436276 27436411 chr5,27436276,27436612,-,LTR31,LTR,ERV1,-271,348,1,27436005,27436612 +1 - chr5 27472292 27472487 chr5,27472073,27472487,+,MER61C,LTR,ERV1,14,428,0,27472060,27472487 +1 + chr5 27472487 27472519 chr5,27472487,27472711,+,MER61-int,LTR,ERV1,2,215,-5002,27472486,27477713 +4 + chr5 27475535 27475695 chr5,27472714,27477542,+,MER61-int,LTR,ERV1,343,5213,-4,27472372,27477546 +1 + chr5 27476069 27476158 chr5,27472714,27477542,+,MER61-int,LTR,ERV1,343,5213,-4,27472372,27477546 +1 + chr5 27477639 27477801 chr5,27477542,27477973,+,MER61C,LTR,ERV1,6,428,0,27477537,27477973 +3 + chr5 27485653 27485694 chr5,27485653,27485694,+,(AATAGAA)n,Simple_repeat,Simple_repeat,1,43,0,27485653,27485694 +6 + chr5 27485969 27486121 chr5,27485969,27486121,-,L2,LINE,L2,-961,2458,2291,27485008,27488411 -6 - chr5 27495949 27496220 chr5,27495920,27496220,-,AluY,SINE,Alu,-5,306,1,27495915,27496220 -2 - chr5 27496308 27496401 chr5,27496308,27496426,+,MIR,SINE,MIR,118,241,-21,27496191,27496447 +5 + chr5 28286590 28286789 chr5,28286590,28286789,-,ERV3-16A3_I-int,LTR,ERVL,-129,5097,4900,28286461,28291688 +6 - chr5 28286793 28286886 chr5,28286793,28287490,+,LTR30,LTR,ERV1,1,722,0,28286793,28287490 -2 + chr5 28782678 28782773 chr5,28782195,28782773,+,MLT2B3,LTR,ERVL,1,554,0,28782195,28782773 -5 + chr5 29143503 29143729 chr5,29143203,29143988,+,MER21C,LTR,ERVL,1,853,-85,29143203,29144073 +1 + chr5 29167608 29167797 chr5,29167564,29167839,+,MLT1B,LTR,ERVL-MaLR,134,390,0,29167431,29167839 +5 + chr5 29172077 29172358 chr5,29172077,29172380,+,AluY,SINE,Alu,1,303,-8,29172077,29172388 +5 + chr5 29191699 29191855 chr5,29191266,29192108,-,L1PA2,LINE,L1,-5190,965,130,29186076,29192237 -1 - chr5 29211312 29211413 chr5,29211278,29211727,+,LTR54B,LTR,ERV1,8,496,-2,29211271,29211729 +3 + chr5 29216469 29216611 chr5,29216349,29216783,+,Tigger2a,DNA,TcMar-Tigger,3,433,-1,29216347,29216784 +5 + chr5 29380296 29380325 chr5,29380290,29380495,-,MLT1H,LTR,ERVL-MaLR,-274,275,66,29380016,29380560 +5 - chr5 29383104 29383260 chr5,29382588,29383260,+,MER51A,LTR,ERV1,1,625,-9,29382588,29383269 -5 + chr5 29395854 29395981 chr5,29394634,29396044,+,HERVFH21-int,LTR,ERV1,5354,8020,-416,29389281,29396460 -1 + chr5 29979669 29979742 chr5,29979428,29979742,-,AluSq,SINE,Alu,0,313,1,29979428,29979742 -1 - chr5 29979742 29979929 chr5,29979742,29979929,-,MLT1C,LTR,ERVL-MaLR,-287,180,1,29979455,29979929 -6 - chr5 29980103 29980413 chr5,29980103,29980413,+,AluSq2,SINE,Alu,3,311,-2,29980101,29980415 +6 + chr5 29981001 29981072 chr5,29981001,29981072,+,L2c,LINE,L2,3302,3371,-16,29977700,29981088 +6 + chr5 29981173 29981283 chr5,29981173,29981283,+,(AT)n,Simple_repeat,Simple_repeat,1,110,0,29981173,29981283 +6 + chr5 29981318 29981635 chr5,29981318,29981635,-,AluJo,SINE,Alu,-16,296,3,29981302,29981637 -6 - chr5 29981636 29981839 chr5,29981636,29981839,+,L2c,LINE,L2,2644,2858,-561,29978993,29982400 +6 + chr5 29981938 29982229 chr5,29981938,29982229,+,L2c,LINE,L2,2955,3247,-140,29978984,29982369 +6 + chr5 31093977 31094059 chr5,31093898,31094259,-,MLT1A0,LTR,ERVL-MaLR,-4,361,1,31093894,31094259 +5 - chr5 31115547 31115581 chr5,31115216,31115599,+,L1PA10,LINE,L1,5776,6157,-11,31109441,31115610 -3 + chr5 31559142 31559227 chr5,31559142,31559227,+,MIRb,SINE,MIR,35,128,-140,31559108,31559367 +6 + chr5 31559304 31559431 chr5,31559304,31559431,+,L2b,LINE,L2,3237,3375,0,31556068,31559431 +6 + chr5 31657218 31657377 chr5,31657188,31657515,+,CR1-3_Croc,LINE,CR1,1914,2239,-1366,31655275,31658881 +1 + chr5 31664837 31665011 chr5,31664765,31665011,-,MLT1J1,LTR,ERVL-MaLR,-123,321,64,31664642,31665074 -2 - chr5 31742190 31742263 chr5,31742190,31742263,+,MIRc,SINE,MIR,164,238,-30,31742027,31742293 -6 + chr5 32103445 32103656 chr5,32103430,32103656,+,L1MEi,LINE,L1,1263,1527,-685,32102168,32104341 -5 + chr5 32106124 32106180 chr5,32105951,32106454,-,MER1A,DNA,hAT-Charlie,-1,528,1,32105950,32106454 +3 - chr5 32106401 32106454 chr5,32105951,32106454,-,MER1A,DNA,hAT-Charlie,-1,528,1,32105950,32106454 +4 - chr5 32106464 32106502 chr5,32106464,32106593,-,MIRc,SINE,MIR,-50,218,88,32106414,32106680 +2 - chr5 32121495 32121579 chr5,32121477,32121642,+,L1ME3B,LINE,L1,5967,6192,-50,32115511,32121692 -3 + chr5 32121916 32121941 chr5,32121916,32121997,+,L1ME3G,LINE,L1,33,116,-776,32121884,32122773 -1 + chr5 32925780 32925831 chr5,32925780,32925889,-,L2c,LINE,L2,-1,3386,3284,32925779,32929172 +2 - chr5 32947443 32947491 chr5,32947175,32947491,+,AluY,SINE,Alu,1,311,0,32947175,32947491 +1 + chr5 32947501 32947821 chr5,32947501,32947821,-,MLT1J2,LTR,ERVL-MaLR,-1,447,110,32947500,32947930 -4 - chr5 32948943 32949064 chr5,32948910,32949064,+,L2a,LINE,L2,3261,3425,-1,32945650,32949065 +1 + chr5 32962072 32962467 chr5,32962072,32962490,+,MER92A,LTR,ERV1,1,412,0,32962072,32962490 +5 + chr5 33011503 33011560 chr5,33011503,33011721,-,MIRc,SINE,MIR,-32,236,14,33011471,33011734 +2 - chr5 33016951 33017095 chr5,33016820,33017257,+,MLT1D,LTR,ERVL-MaLR,1,505,0,33016820,33017257 -3 + chr5 33023094 33023241 chr5,33023094,33023241,+,L4_A_Mam,LINE,RTE-X,1206,1351,-3639,33021889,33026880 -5 + chr5 33025399 33025653 chr5,33025306,33025653,-,MLT1A1,LTR,ERVL-MaLR,0,408,3,33025306,33025655 -2 - chr5 33025672 33025724 chr5,33025672,33026257,-,MLT1A1-int,LTR,ERVL-MaLR,-12,1723,1113,33025660,33027369 -5 - chr5 33049235 33049401 chr5,33049026,33055088,+,L1M2a,LINE,L1,399,6374,-1185,33048628,33056273 -1 + chr5 33255476 33255553 chr5,33255432,33255802,+,LTR16,LTR,ERVL,6,370,-68,33255427,33255870 +5 + chr5 33263500 33263615 chr5,33263443,33263615,-,THE1B,LTR,ERVL-MaLR,-28,336,171,33263415,33263785 +4 - chr5 33297738 33297910 chr5,33297738,33298188,-,MER48,LTR,ERV1,0,407,1,33297738,33298188 +1 - chr5 33424083 33424146 chr5,33424083,33424295,+,MLT1K,LTR,ERVL-MaLR,256,476,-119,33423828,33424414 -2 + chr5 33519616 33519938 chr5,33519586,33519938,-,LTR16E1,LTR,ERVL,-15,523,76,33519571,33520013 +5 - chr5 33520013 33520066 chr5,33520013,33520127,+,MER5A,DNA,hAT-Charlie,3,130,-59,33520011,33520186 -2 + chr5 33522019 33522190 chr5,33522019,33522190,+,LTR79,LTR,ERVL,282,479,-48,33521738,33522238 -6 + chr5 34124302 34124385 chr5,34124302,34124708,-,MSTA,LTR,ERVL-MaLR,0,428,1,34124302,34124708 +1 - chr5 34158121 34158406 chr5,34158101,34158406,-,AluSz,SINE,Alu,-7,305,1,34158094,34158406 -1 - chr5 34651631 34651770 chr5,34651631,34651770,+,MIRb,SINE,MIR,44,191,-77,34651588,34651847 -6 + chr5 34651822 34651888 chr5,34651822,34652011,+,MIR,SINE,MIR,3,191,-71,34651820,34652082 -1 + chr5 34838028 34838095 chr5,34838028,34838095,-,MIRc,SINE,MIR,-195,73,6,34837833,34838100 +6 - chr5 35895929 35895978 chr5,35895929,35895978,+,(TTCC)n,Simple_repeat,Simple_repeat,1,50,0,35895929,35895978 -6 + chr5 36221055 36221135 chr5,36220731,36221135,-,MLT1F,LTR,ERVL-MaLR,-135,413,1,36220596,36221135 -1 - chr5 36221256 36221409 chr5,36221256,36221487,+,MLT1F1,LTR,ERVL-MaLR,333,567,-2,36220924,36221489 +4 + chr5 36636045 36636078 chr5,36636045,36636078,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,36636045,36636078 -6 + chr5 36636153 36636280 chr5,36636153,36636280,-,L2c,LINE,L2,-4,3383,3267,36636149,36639546 +6 - chr5 36649315 36649347 chr5,36649066,36649367,+,AluSp,SINE,Alu,6,302,-11,36649061,36649378 -1 + chr5 36702578 36702964 chr5,36702578,36703052,-,MLT1D,LTR,ERVL-MaLR,0,505,5,36702578,36703056 +5 - chr5 36705680 36705851 chr5,36705544,36706073,-,L4_B_Mam,LINE,RTE-X,-893,4048,3502,36704651,36709574 +3 - chr5 36861879 36861930 chr5,36861879,36861930,+,(TTACAT)n,Simple_repeat,Simple_repeat,1,53,0,36861879,36861930 -6 + chr5 36861959 36862217 chr5,36861959,36862680,-,L2c,LINE,L2,0,3426,2534,36861959,36865213 +1 - chr5 37871650 37871750 chr5,37871650,37871750,+,L2b,LINE,L2,3249,3355,-20,37868402,37871770 +6 + chr5 37871761 37872142 chr5,37871761,37872142,-,L1ME1,LINE,L1,-11,6168,5785,37871750,37877926 -6 - chr5 37872301 37872465 chr5,37872301,37872741,+,MLT1J,LTR,ERVL-MaLR,3,432,-80,37872299,37872821 +4 + chr5 37873692 37873822 chr5,37873692,37873822,-,Charlie15a,DNA,hAT-Charlie,0,224,93,37873692,37873914 -6 - chr5 37873912 37874266 chr5,37873912,37874318,+,Tigger15a,DNA,TcMar-Tigger,49,465,-250,37873864,37874568 +4 + chr5 37874701 37874822 chr5,37874605,37874822,-,MIR,SINE,MIR,0,262,18,37874605,37874839 -2 - chr5 37874830 37874970 chr5,37874830,37874970,+,Tigger15a,DNA,TcMar-Tigger,574,705,-10,37874257,37874980 +5 + chr5 37899389 37899668 chr5,37899389,37899689,+,AluSp,SINE,Alu,3,301,-12,37899387,37899701 -2 + chr5 37919954 37920072 chr5,37919898,37920072,+,L2b,LINE,L2,2118,2299,-1120,37917781,37921192 -4 + chr5 37939365 37939669 chr5,37939315,37939832,-,MLT1D,LTR,ERVL-MaLR,0,505,1,37939315,37939832 +5 - chr5 37948491 37948537 chr5,37948398,37948584,-,MIR3,SINE,MIR,-3,205,20,37948395,37948603 -1 - chr5 37950557 37950591 chr5,37950191,37950591,-,L2b,LINE,L2,-193,3182,2748,37949998,37953338 -2 - chr5 37950929 37951055 chr5,37950929,37951127,+,MLT1I,LTR,ERVL-MaLR,1,210,-201,37950929,37951328 +5 + chr5 38151265 38151560 chr5,38151191,38151560,+,LTR16A2,LTR,ERVL,25,417,-78,38151167,38151638 +2 + chr5 38152706 38152824 chr5,38152706,38152824,-,L3,LINE,CR1,-1121,2978,2859,38151585,38155682 -6 - chr5 38152925 38152952 chr5,38152925,38152952,+,(TCAT)n,Simple_repeat,Simple_repeat,1,28,0,38152925,38152952 +6 + chr5 38153048 38153332 chr5,38153048,38153332,+,L1PA16,LINE,L1,5882,6162,-4,38147167,38153336 +6 + chr5 38153558 38153652 chr5,38153558,38153652,-,MLT1L,LTR,ERVL-MaLR,-400,210,115,38153158,38153766 -6 - chr5 38282264 38282601 chr5,38282220,38282609,-,LTR16C,LTR,ERVL,0,489,70,38282220,38282678 +5 - chr5 38285689 38285957 chr5,38285606,38285957,-,THE1D,LTR,ERVL-MaLR,0,381,1,38285606,38285957 +4 - chr5 38286133 38286277 chr5,38286133,38286277,-,MIR,SINE,MIR,-24,238,99,38286109,38286375 +6 - chr5 38290600 38290799 chr5,38290564,38290799,+,L2c,LINE,L2,2972,3203,-184,38287593,38290983 -4 + chr5 38290799 38290986 chr5,38290799,38291100,+,AluY,SINE,Alu,1,300,-11,38290799,38291111 -1 + chr5 38346493 38346531 chr5,38346358,38346531,+,MIRb,SINE,MIR,27,205,-63,38346332,38346594 -4 + chr5 38403235 38403269 chr5,38403184,38403269,-,Tigger7,DNA,TcMar-Tigger,0,2491,2404,38403184,38405672 +4 - chr5 38403268 38403362 chr5,38403268,38403777,-,Tigger7,DNA,TcMar-Tigger,-1959,532,2,38401309,38403778 +1 - chr5 38403399 38403413 chr5,38403268,38403777,-,Tigger7,DNA,TcMar-Tigger,-1959,532,2,38401309,38403778 +1 - chr5 38460960 38461036 chr5,38460960,38461036,-,MIRb,SINE,MIR,-48,220,133,38460912,38461168 +6 - chr5 38461072 38461205 chr5,38461072,38461205,-,MIRb,SINE,MIR,-10,258,122,38461062,38461326 +6 - chr5 38461216 38461313 chr5,38461216,38461382,-,L2a,LINE,L2,-18,3408,3242,38461198,38464623 +2 - chr5 38466163 38466398 chr5,38466127,38466475,-,MLT1H,LTR,ERVL-MaLR,-13,536,175,38466114,38466649 +5 - chr5 38558024 38558284 chr5,38558024,38558284,+,ORSL,DNA,hAT-Tip100,25,275,0,38558000,38558284 +6 + chr5 38558436 38558485 chr5,38558436,38558485,-,MIRb,SINE,MIR,-66,202,152,38558370,38558636 -6 - chr5 38558491 38558565 chr5,38558491,38558565,-,Arthur1C,DNA,hAT-Tip100,-1,362,291,38558490,38558855 -6 - chr5 38558567 38558913 chr5,38558567,38558913,-,THE1D,LTR,ERVL-MaLR,0,381,2,38558567,38558914 -1 - chr5 38558920 38559155 chr5,38558920,38559155,-,Arthur1B,DNA,hAT-Tip100,-981,244,4,38557939,38559158 -1 - chr5 38579146 38579331 chr5,38579038,38579331,-,MLT1I,LTR,ERVL-MaLR,-1,410,71,38579037,38579401 -2 - chr5 38579474 38579594 chr5,38579474,38579653,-,MER103C,DNA,hAT-Charlie,-68,229,42,38579406,38579694 -5 - chr5 38594922 38594964 chr5,38594827,38594964,-,MER91A,DNA,hAT-Tip100,-53,143,4,38594774,38594967 -2 - chr5 38607665 38607750 chr5,38607665,38607750,-,MIR3,SINE,MIR,-10,198,109,38607655,38607858 -6 - chr5 38608115 38608139 chr5,38608115,38608139,+,(AG)n,Simple_repeat,Simple_repeat,1,24,0,38608115,38608139 +6 + chr5 38644350 38644366 chr5,38644046,38644366,-,LTR33,LTR,ERVL,-92,423,39,38643954,38644404 -2 - chr5 38646632 38646714 chr5,38646189,38646732,-,ERV3-16A3_I-int,LTR,ERVL,-1022,4204,3641,38645167,38650372 -3 - chr5 38647233 38647272 chr5,38647138,38647272,-,MLT1F,LTR,ERVL-MaLR,-8,552,398,38647130,38647669 -2 - chr5 38647315 38647435 chr5,38647315,38647740,-,MLT1F,LTR,ERVL-MaLR,-123,425,1,38647192,38647740 -4 - chr5 38653078 38653160 chr5,38653078,38653319,-,AluJb,SINE,Alu,-73,239,2,38653005,38653320 -4 - chr5 38682218 38682302 chr5,38682218,38682336,+,L2a,LINE,L2,3298,3418,-8,38678921,38682344 +4 + chr5 38684806 38684827 chr5,38684384,38684827,+,MSTB2,LTR,ERVL-MaLR,1,457,0,38684384,38684827 +2 + chr5 38715678 38715802 chr5,38715678,38715883,+,LTR16E2,LTR,ERVL,84,314,-254,38715595,38716137 -2 + chr5 38716465 38716489 chr5,38716375,38716489,+,MIR3,SINE,MIR,7,143,-87,38716369,38716576 -4 + chr5 38736127 38736328 chr5,38736127,38736435,+,MLT1H2,LTR,ERVL-MaLR,1,437,-75,38736127,38736510 -2 + chr5 38792277 38792590 chr5,38792277,38792590,+,L3,LINE,CR1,2497,2859,-1240,38789781,38793830 +6 + chr5 38792603 38792746 chr5,38792603,38792746,+,CR1-3_Croc,LINE,CR1,1876,2014,-1591,38790728,38794337 +6 + chr5 38843263 38843487 chr5,38843145,38843487,+,AluY,SINE,Alu,1,311,0,38843145,38843487 -5 + chr5 38843658 38843937 chr5,38843658,38844061,-,MLT1C,LTR,ERVL-MaLR,0,467,40,38843658,38844100 +2 - chr5 39521519 39521627 chr5,39520956,39522043,-,L1PA13,LINE,L1,-7,6156,5083,39520949,39527125 -1 - chr5 39524275 39524320 chr5,39524275,39524320,+,A-rich,Low_complexity,Low_complexity,1,47,0,39524275,39524320 +6 + chr5 40052401 40052476 chr5,40052401,40052560,-,MIRb,SINE,MIR,-1,267,76,40052400,40052635 -4 - chr5 40053306 40053324 chr5,40053306,40053505,+,MIRb,SINE,MIR,26,257,-11,40053281,40053516 +5 + chr5 41871151 41871305 chr5,41871151,41871305,+,MIR,SINE,MIR,86,262,0,41871066,41871305 +6 + chr5 42188266 42188544 chr5,42188095,42188544,+,MLT1C,LTR,ERVL-MaLR,6,467,0,42188090,42188544 +1 + chr5 42188987 42189026 chr5,42188987,42189026,+,MIR,SINE,MIR,164,187,-75,42188824,42189101 +6 + chr5 42189026 42189319 chr5,42189026,42189319,+,AluSx1,SINE,Alu,2,296,-16,42189025,42189335 +6 + chr5 42189319 42189368 chr5,42189319,42189368,+,MIR,SINE,MIR,188,237,-25,42189132,42189393 +6 + chr5 42190662 42190944 chr5,42190662,42190944,+,AluSx1,SINE,Alu,1,282,-30,42190662,42190974 +6 + chr5 42190944 42190985 chr5,42190944,42190985,+,(AAT)n,Simple_repeat,Simple_repeat,1,41,0,42190944,42190985 +6 + chr5 42806394 42806815 chr5,42806322,42806815,-,L2,LINE,L2,-922,2497,2003,42805400,42808817 -1 - chr5 43006823 43006842 chr5,43006823,43006842,+,(ATT)n,Simple_repeat,Simple_repeat,1,19,0,43006823,43006842 -6 + chr5 43006842 43007117 chr5,43006842,43007117,-,AluSc,SINE,Alu,-28,281,1,43006814,43007117 +6 - chr5 43014414 43014534 chr5,43014257,43014534,-,AluJb,SINE,Alu,-31,281,5,43014226,43014538 +5 - chr5 43014688 43014726 chr5,43014688,43014726,+,(AAAT)n,Simple_repeat,Simple_repeat,1,38,0,43014688,43014726 -6 + chr5 43014773 43014826 chr5,43014773,43014826,+,(TCCT)n,Simple_repeat,Simple_repeat,1,54,0,43014773,43014826 -6 + chr5 43018573 43018672 chr5,43018573,43018883,+,AluY,SINE,Alu,1,309,-2,43018573,43018885 +1 + chr5 43018573 43018811 chr5,43018573,43018883,+,AluY,SINE,Alu,1,309,-2,43018573,43018885 -1 + chr5 43023919 43024097 chr5,43023826,43024180,+,MER4-int,LTR,ERV1,3963,4300,-2298,43019864,43026478 +3 + chr5 43024199 43024247 chr5,43024180,43024477,-,AluJb,SINE,Alu,-15,297,1,43024165,43024477 -5 - chr5 43043458 43043567 chr5,43043458,43043593,-,AluJo,SINE,Alu,-44,268,132,43043414,43043724 -4 - chr5 43061941 43061958 chr5,43061941,43061958,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,43061941,43061958 +6 + chr5 43287601 43287927 chr5,43287425,43287927,-,LTR16E2,LTR,ERVL,-1,567,16,43287424,43287942 -1 - chr5 43287945 43288096 chr5,43287945,43288096,-,L2a,LINE,L2,-374,3045,2887,43287571,43290982 -6 - chr5 43288833 43288922 chr5,43288833,43288922,-,L3,LINE,CR1,-7,4092,4005,43288826,43292926 -6 - chr5 43289154 43289282 chr5,43289154,43289282,+,L2c,LINE,L2,3274,3387,0,43285881,43289282 +6 + chr5 43511058 43511299 chr5,43510426,43512039,+,SVA_A,Retroposon,SVA,15,1387,0,43510412,43512039 +1 + chr5 43515854 43515964 chr5,43515811,43516110,+,Tigger1,DNA,TcMar-Tigger,2,297,-2121,43515810,43518231 +3 + chr5 43521558 43521811 chr5,43521518,43523079,+,SVA_D,Retroposon,SVA,47,1380,-6,43521472,43523085 +5 + chr5 43571594 43574022 chr5,43571512,43574022,-,LTR49-int,LTR,ERV1,-87,6244,3774,43571425,43577795 +5 - chr5 43574022 43574334 chr5,43574022,43574334,-,AluSz,SINE,Alu,-2,310,1,43574020,43574334 +6 - chr5 43574334 43574424 chr5,43574334,43574424,-,LTR49-int,LTR,ERV1,-2558,3773,3693,43571776,43578116 +6 - chr5 43574446 43574738 chr5,43574446,43574738,-,LTR49-int,LTR,ERV1,-3107,3224,2932,43571339,43577669 +6 - chr5 43574738 43575037 chr5,43574738,43575037,-,AluSq2,SINE,Alu,-16,297,1,43574722,43575037 +6 - chr5 43575037 43575275 chr5,43575037,43575275,-,LTR49-int,LTR,ERV1,-3400,2931,2704,43571637,43577978 +6 - chr5 43575275 43575560 chr5,43575275,43575560,+,MSTB,LTR,ERVL-MaLR,1,283,-143,43575275,43575703 -6 + chr5 43575560 43575873 chr5,43575560,43575873,-,AluSz,SINE,Alu,0,312,1,43575560,43575873 +5 - chr5 43575873 43575935 chr5,43575873,43576023,+,MSTB,LTR,ERVL-MaLR,284,426,0,43575590,43576023 -2 + chr5 43577642 43579120 chr5,43577639,43579120,-,SVA_D,Retroposon,SVA,-18,1368,75,43577621,43579194 +5 - chr5 43579122 43579157 chr5,43579122,43579157,+,(GAGGGG)n,Simple_repeat,Simple_repeat,1,35,0,43579122,43579157 -5 + chr5 43583467 43583566 chr5,43583213,43583828,-,MER39B,LTR,ERV1,-2,651,10,43583211,43583837 +3 - chr5 43588641 43588676 chr5,43588374,43588676,+,AluSc5,SINE,Alu,1,302,-7,43588374,43588683 -5 + chr5 43603101 43603140 chr5,43603101,43603140,+,G-rich,Low_complexity,Low_complexity,1,40,0,43603101,43603140 -1 + chr5 43874367 43874590 chr5,43874099,43874675,-,L2,LINE,L2,-886,2533,1911,43873213,43876585 -1 - chr5 44395237 44395324 chr5,44394855,44395324,+,LTR33,LTR,ERVL,1,514,-6,44394855,44395330 +2 + chr5 44413037 44413067 chr5,44413037,44413067,+,(AATG)n,Simple_repeat,Simple_repeat,1,31,0,44413037,44413067 +6 + chr5 44413670 44413984 chr5,44413670,44413984,+,MLT1J1,LTR,ERVL-MaLR,65,381,-63,44413606,44414047 +6 + chr5 44504293 44504422 chr5,44503695,44504422,+,LTR1F1,LTR,ERV1,1,729,0,44503695,44504422 -4 + chr5 44510151 44510282 chr5,44510151,44510390,-,MER102b,DNA,hAT-Charlie,-101,240,1,44510050,44510390 +1 - chr5 44700643 44700672 chr5,44700267,44700672,+,L1M5,LINE,L1,4911,5314,-832,44695357,44701504 -4 + chr5 44700689 44700808 chr5,44700689,44701346,+,L1MC4,LINE,L1,6800,7466,-576,44693890,44701922 -1 + chr5 44745139 44745408 chr5,44745139,44745439,-,MLT1A,LTR,ERVL-MaLR,0,374,1,44745139,44745439 +2 - chr5 44752949 44753031 chr5,44752754,44753114,+,THE1B,LTR,ERVL-MaLR,1,364,0,44752754,44753114 +1 + chr5 44762086 44762162 chr5,44761560,44762179,+,MLT1H2-int,LTR,ERVL-MaLR,703,1369,-40,44760858,44762219 +3 + chr5 44765314 44765352 chr5,44765292,44765352,+,MLT1H2,LTR,ERVL-MaLR,97,157,-332,44765196,44765684 +2 + chr5 44765436 44765605 chr5,44765436,44765605,+,MLT1H2,LTR,ERVL-MaLR,360,532,-17,44765077,44765622 +6 + chr5 44775694 44775970 chr5,44774630,44775970,-,L1MA2,LINE,L1,0,6304,4932,44774630,44780901 +5 - chr5 44776905 44776947 chr5,44776905,44776947,+,(TG)n,Simple_repeat,Simple_repeat,1,42,0,44776905,44776947 -6 + chr5 44777268 44777328 chr5,44777268,44777351,-,LTR33B,LTR,ERVL,-138,365,281,44777130,44777631 +2 - chr5 44777909 44777992 chr5,44777354,44778464,+,L1ME3E,LINE,L1,4933,6182,-60,44772422,44778524 -3 + chr5 44785049 44785131 chr5,44784807,44785131,+,MER4A1,LTR,ERV1,1,350,-122,44784807,44785253 -4 + chr5 44785132 44785181 chr5,44785132,44785668,-,MER41C,LTR,ERV1,-1,520,1,44785131,44785668 +2 - chr5 44786826 44786952 chr5,44785668,44787904,-,MER41-int,LTR,ERV1,0,5946,2856,44785668,44790759 +3 - chr5 44826076 44826473 chr5,44824505,44826473,-,L1PA4,LINE,L1,-3,6152,4166,44824502,44830638 -1 - chr5 44826531 44826586 chr5,44826531,44826586,+,(T)n,Simple_repeat,Simple_repeat,1,55,0,44826531,44826586 +6 + chr5 44826611 44826823 chr5,44826611,44826823,-,L3,LINE,CR1,-2110,1989,1770,44824501,44828592 -6 - chr5 44826833 44826942 chr5,44826833,44826942,-,MIRb,SINE,MIR,-9,259,145,44826824,44827086 -6 - chr5 44827281 44827306 chr5,44827281,44827306,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,44827281,44827306 +6 + chr5 44827629 44828527 chr5,44827629,44828527,+,L1ME3Cz,LINE,L1,71,981,-16,44827559,44828543 +6 + chr5 45035199 45035276 chr5,45035174,45035499,+,LTR82B,LTR,ERVL,506,830,0,45034669,45035499 +1 + chr5 45098283 45098575 chr5,45098283,45098575,-,AluSx,SINE,Alu,-13,299,2,45098270,45098576 -6 - chr5 45890216 45890641 chr5,45889942,45891627,+,SVA_C,Retroposon,SVA,2,1383,-1,45889941,45891628 +1 + chr5 50662959 50663246 chr5,50662959,50663246,-,AluJr,SINE,Alu,-13,299,6,50662946,50663251 +6 - chr5 50858760 50858935 chr5,50858560,50858935,+,MamGypsy2-I,LTR,Gypsy,2128,2506,-1660,50856433,50860595 -5 + chr5 50859143 50859225 chr5,50859143,50859225,-,LTR85a,LTR,Gypsy?,-29,673,591,50859114,50859815 +6 - chr5 50859842 50860020 chr5,50859834,50861174,-,L1MDa,LINE,L1,-4640,1993,593,50855194,50861766 +1 - chr5 51372746 51373158 chr5,51372746,51373158,-,L1ME1,LINE,L1,-1,6178,5791,51372745,51378948 +6 - chr5 51373343 51373502 chr5,51373343,51373502,-,MamTip2,DNA,hAT-Tip100,-128,177,20,51373215,51373521 +6 - chr5 51373991 51374012 chr5,51373991,51374012,+,(CTG)n,Simple_repeat,Simple_repeat,1,21,0,51373991,51374012 -6 + chr5 51376396 51376442 chr5,51376396,51376442,+,(AT)n,Simple_repeat,Simple_repeat,1,47,0,51376396,51376442 -6 + chr5 51378573 51378642 chr5,51378573,51378642,+,(CTC)n,Simple_repeat,Simple_repeat,1,71,0,51378573,51378642 -5 + chr5 51383047 51383092 chr5,51383047,51383092,+,(GCGCAG)n,Simple_repeat,Simple_repeat,1,46,0,51383047,51383092 -6 + chr5 51383104 51383145 chr5,51383104,51383145,+,GA-rich,Low_complexity,Low_complexity,1,41,0,51383104,51383145 -6 + chr5 51964156 51964441 chr5,51964156,51964441,+,MLT1J,LTR,ERVL-MaLR,139,445,-67,51964018,51964508 +6 + chr5 52685605 52685690 chr5,52685326,52685916,-,MER77,LTR,ERVL,0,604,1,52685326,52685916 +3 - chr5 52785535 52785592 chr5,52785361,52785680,-,MER1A,DNA,hAT-Charlie,0,529,190,52785361,52785869 +3 - chr5 52978252 52978395 chr5,52976804,52978395,-,L1P3,LINE,L1,-4892,1569,3,52971912,52978397 +4 - chr5 53112337 53112787 chr5,53112337,53112787,+,LTR12B,LTR,ERV1,1,437,-230,53112337,53113017 +6 + chr5 53112873 53113255 chr5,53112873,53113255,-,MER57B2,LTR,ERV1,0,403,3,53112873,53113257 -6 - chr5 53113890 53114853 chr5,53113890,53114853,-,LTR1D,LTR,ERV1,-1,974,1,53113889,53114853 -5 - chr5 53777269 53777286 chr5,53777269,53777423,+,MIR,SINE,MIR,116,257,-5,53777154,53777428 -2 + chr5 53819556 53819567 chr5,53819498,53819567,-,LTR79,LTR,ERVL,-333,194,126,53819165,53819692 +4 - chr5 53880504 53880608 chr5,53880504,53880608,+,L2a,LINE,L2,3306,3426,0,53877199,53880608 -6 + chr5 54320944 54320998 chr5,54320892,54321153,-,AluJr,SINE,Alu,-16,296,1,54320876,54321153 -1 - chr5 54390838 54390933 chr5,54390655,54391005,+,THE1B,LTR,ERVL-MaLR,8,363,-1,54390648,54391006 +1 + chr5 54400451 54400598 chr5,54400451,54400655,+,MIRb,SINE,MIR,7,213,-55,54400445,54400710 +4 + chr5 54401643 54401905 chr5,54401627,54401924,+,MLT1F,LTR,ERVL-MaLR,188,546,-23,54401440,54401947 +5 + chr5 54403523 54403788 chr5,54403389,54403857,+,MLT1F,LTR,ERVL-MaLR,1,548,0,54403389,54403857 +3 + chr5 54408455 54408521 chr5,54407930,54408561,-,L1MC5a,LINE,L1,-327,2450,1744,54407603,54410304 -3 - chr5 54415022 54415036 chr5,54414716,54415036,-,MER2,DNA,TcMar-Tigger,-1,344,1,54414715,54415036 -2 - chr5 54415036 54415119 chr5,54415036,54415119,+,L1MC,LINE,L1,3281,3359,-2787,54411756,54417906 +5 + chr5 54644464 54644931 chr5,54644464,54644931,+,MLT1J,LTR,ERVL-MaLR,3,468,-44,54644462,54644975 +6 + chr5 54644932 54645074 chr5,54644932,54645074,+,MER5A1,DNA,hAT-Charlie,25,166,0,54644908,54645074 +6 + chr5 54957813 54957846 chr5,54957813,54958050,-,MLT1L,LTR,ERVL-MaLR,-358,252,7,54957455,54958056 +1 - chr5 55021299 55021395 chr5,55021047,55021395,-,MER5C,DNA,hAT-Charlie,0,313,4,55021047,55021398 +5 - chr5 55023952 55024124 chr5,55023952,55024124,+,AluYh3,SINE,Alu,131,302,-9,55023822,55024133 -6 + chr5 55027589 55027643 chr5,55027503,55027691,+,MIRc,SINE,MIR,6,209,-59,55027498,55027750 -1 + chr5 55032472 55032566 chr5,55032449,55032743,+,AluJb,SINE,Alu,1,294,-18,55032449,55032761 -1 + chr5 55032649 55032729 chr5,55032449,55032743,+,AluJb,SINE,Alu,1,294,-18,55032449,55032761 -1 + chr5 55039525 55039580 chr5,55039473,55039584,-,L2c,LINE,L2,0,3387,3281,55039473,55042864 +3 - chr5 55042629 55042844 chr5,55042550,55042893,+,THE1B,LTR,ERVL-MaLR,3,364,0,55042548,55042893 -1 + chr5 55054442 55054781 chr5,55054442,55054961,-,MER51A,LTR,ERV1,0,634,1,55054442,55054961 -4 - chr5 55054904 55054961 chr5,55054442,55054961,-,MER51A,LTR,ERV1,0,634,1,55054442,55054961 -2 - chr5 55065949 55066104 chr5,55065919,55066104,-,AluSx1,SINE,Alu,-2,310,126,55065917,55066229 -2 - chr5 55066104 55066230 chr5,55066104,55066758,+,L2b,LINE,L2,1133,1823,-1596,55064972,55068354 +5 + chr5 55279533 55279649 chr5,55279507,55279871,-,AluJb,SINE,Alu,-12,300,1,55279495,55279871 -3 - chr5 55294840 55295201 chr5,55294785,55295233,+,MLT1H2,LTR,ERVL-MaLR,26,489,0,55294760,55295233 +5 + chr5 55484403 55484419 chr5,55483999,55484419,+,MER31B,LTR,ERV1,1,458,-8,55483999,55484427 +1 + chr5 55484618 55485086 chr5,55484618,55485281,+,MER21C,LTR,ERVL,135,816,-122,55484484,55485403 +5 + chr5 56001913 56002144 chr5,56001913,56002144,+,MLT1E1A,LTR,ERVL-MaLR,31,428,-252,56001883,56002396 +6 + chr5 56002144 56002451 chr5,56002144,56002451,+,AluSg7,SINE,Alu,1,307,-2,56002144,56002453 +6 + chr5 56002451 56002699 chr5,56002451,56002699,+,MLT1E1A,LTR,ERVL-MaLR,429,680,0,56002023,56002699 +6 + chr5 56002876 56003064 chr5,56002876,56003064,-,L2c,LINE,L2,0,3387,3191,56002876,56006254 -6 - chr5 56003145 56003615 chr5,56003145,56003615,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,56003145,56003615 +6 + chr5 56067087 56067372 chr5,56067087,56067420,+,MLT1A0,LTR,ERVL-MaLR,1,364,-1,56067087,56067421 +5 + chr5 56313905 56313917 chr5,56313879,56313917,+,(GAGCCAG)n,Simple_repeat,Simple_repeat,1,39,0,56313879,56313917 -5 + chr5 56464009 56464046 chr5,56463790,56464046,-,Tigger6a,DNA,TcMar-Tigger,-52,1031,769,56463738,56464814 +4 - chr5 56464106 56464116 chr5,56464106,56464550,-,MER74B,LTR,ERVL,-93,529,56,56464013,56464605 +2 - chr5 56464987 56465067 chr5,56464558,56465333,-,Tigger6a,DNA,TcMar-Tigger,-306,777,24,56464252,56465356 +5 - chr5 56536583 56536864 chr5,56536554,56536864,-,AluSp,SINE,Alu,-2,311,1,56536552,56536864 +5 - chr5 56537649 56537689 chr5,56537575,56537689,+,MIRb,SINE,MIR,95,206,-62,56537481,56537751 -4 + chr5 56842016 56842162 chr5,56841936,56842162,-,L1ME3Cz,LINE,L1,-13,984,780,56841923,56842941 +5 - chr5 56862074 56862164 chr5,56862044,56862449,-,MLT1H2,LTR,ERVL-MaLR,-49,530,1,56861995,56862449 +1 - chr5 56900041 56900219 chr5,56899686,56900219,-,L2,LINE,L2,-554,2865,2305,56899132,56902523 +5 - chr5 56900288 56900401 chr5,56900288,56900401,-,MLT1J,LTR,ERVL-MaLR,-103,409,297,56900185,56900697 +6 - chr5 56927874 56928374 chr5,56927560,56928374,-,L1MC1,LINE,L1,-1,6332,5483,56927559,56933856 -1 - chr5 56928955 56929027 chr5,56928955,56929027,+,(CT)n,Simple_repeat,Simple_repeat,1,72,0,56928955,56929027 +6 + chr5 56929286 56929573 chr5,56929286,56929584,+,AluJb,SINE,Alu,2,302,-10,56929285,56929594 +5 + chr5 56941499 56941579 chr5,56941499,56942245,-,L2,LINE,L2,-341,3078,2249,56941158,56944493 -4 - chr5 57496780 57496917 chr5,57495739,57497121,+,HAL1,LINE,L1,535,1996,-511,57495205,57497632 +3 + chr5 57614270 57614341 chr5,57614270,57614447,+,MIR3,SINE,MIR,16,205,-3,57614255,57614450 +5 + chr5 57614389 57614447 chr5,57614270,57614447,+,MIR3,SINE,MIR,16,205,-3,57614255,57614450 +5 + chr5 57751287 57751309 chr5,57751287,57751309,+,(ATTT)n,Simple_repeat,Simple_repeat,1,22,0,57751287,57751309 -6 + chr5 57751436 57751717 chr5,57751436,57751746,+,AluSq,SINE,Alu,1,311,-2,57751436,57751748 -1 + chr5 57894910 57894995 chr5,57894877,57895015,+,FLAM_C,SINE,Alu,6,211,-90,57894872,57895105 -3 + chr5 57894910 57894995 chr5,57894887,57895057,-,SVA_B,Retroposon,SVA,-1190,193,1,57893697,57895057 +3 - chr5 57896953 57897091 chr5,57896953,57897091,+,AluSq2,SINE,Alu,176,313,0,57896778,57897091 -6 + chr5 57897817 57898156 chr5,57897817,57898156,-,MER1B,DNA,hAT-Charlie,0,339,2,57897817,57898157 +6 - chr5 57898233 57898519 chr5,57898233,57898519,-,AluJr,SINE,Alu,-22,290,7,57898211,57898525 +6 - chr5 57898563 57898718 chr5,57898563,57898718,-,MIRb,SINE,MIR,-79,189,26,57898484,57898743 +6 - chr5 57899054 57899087 chr5,57899054,57899087,+,(AAACT)n,Simple_repeat,Simple_repeat,1,33,0,57899054,57899087 -6 + chr5 58541567 58542290 chr5,58536154,58542290,-,L1PA3,LINE,L1,-3,6152,3,58536151,58542292 +5 - chr5 58547135 58547371 chr5,58547112,58547401,+,AluSp,SINE,Alu,1,285,-28,58547112,58547429 -3 + chr5 58558186 58558243 chr5,58552269,58558283,-,L1PA2,LINE,L1,-2,6153,124,58552267,58558406 +1 - chr5 58741722 58742000 chr5,58741722,58742017,+,AluSx1,SINE,Alu,1,296,-16,58741722,58742033 -2 + chr5 58815734 58815812 chr5,58815690,58815904,-,L2b,LINE,L2,0,3375,3166,58815690,58819069 +3 - chr5 58848461 58848574 chr5,58848461,58848662,+,MIR,SINE,MIR,52,262,0,58848410,58848662 -2 + chr5 60030848 60030980 chr5,60030829,60031001,-,L1M5,LINE,L1,-1481,4665,4497,60029348,60035497 -1 - chr5 60491380 60491425 chr5,60491380,60491425,+,(TTG)n,Simple_repeat,Simple_repeat,1,45,0,60491380,60491425 +6 + chr5 60521455 60521667 chr5,60521455,60521667,+,MIRc,SINE,MIR,3,236,-32,60521453,60521699 +6 + chr5 60522299 60522328 chr5,60522299,60522328,+,(AAGA)n,Simple_repeat,Simple_repeat,1,29,0,60522299,60522328 +6 + chr5 60522915 60523132 chr5,60522915,60523132,+,MIRb,SINE,MIR,7,213,-55,60522909,60523187 +6 + chr5 60523150 60523371 chr5,60523150,60523371,-,MIR,SINE,MIR,0,262,2,60523150,60523372 -6 - chr5 60523763 60523912 chr5,60523763,60523912,-,L2c,LINE,L2,0,3387,3220,60523763,60527131 -6 - chr5 60524177 60524476 chr5,60524177,60524476,+,AluSc,SINE,Alu,2,303,-6,60524176,60524482 +6 + chr5 60524544 60524973 chr5,60524544,60524973,+,L2b,LINE,L2,2934,3368,-19,60521611,60524992 +6 + chr5 60525136 60525670 chr5,60525136,60525670,+,MLT2B2,LTR,ERVL,2,507,-8,60525135,60525678 +6 + chr5 60525685 60525815 chr5,60525685,60525815,-,L2a,LINE,L2,-5,3421,3274,60525680,60529088 -6 - chr5 60525847 60525896 chr5,60525847,60525896,+,MIR3,SINE,MIR,57,104,-104,60525791,60526000 +6 + chr5 60526227 60526411 chr5,60526227,60526411,+,L2c,LINE,L2,3177,3382,-5,60523051,60526416 +6 + chr5 60533932 60534019 chr5,60533762,60534097,+,MSTD,LTR,ERVL-MaLR,1,396,0,60533762,60534097 +3 + chr5 60546357 60546391 chr5,60546357,60546391,+,(CCCTCTC)n,Simple_repeat,Simple_repeat,1,36,0,60546357,60546391 +6 + chr5 60546647 60546943 chr5,60546647,60546943,+,ERVL-B4-int,LTR,ERVL,5121,5440,-274,60541527,60547217 +6 + chr5 60547200 60547344 chr5,60547200,60547344,+,LTR41C,LTR,ERVL,6,151,-550,60547195,60547894 +6 + chr5 60547344 60547642 chr5,60547344,60547642,+,AluSq2,SINE,Alu,1,313,0,60547344,60547642 +6 + chr5 60547642 60547657 chr5,60547642,60548255,+,LTR41C,LTR,ERVL,152,701,0,60547491,60548255 +5 + chr5 60866852 60866935 chr5,60866852,60867135,-,AluYk2,SINE,Alu,-20,291,1,60866832,60867135 +1 - chr5 60919377 60919395 chr5,60919042,60919395,+,L1MC5,LINE,L1,8919,9302,-2,60910124,60919397 +2 + chr5 61114432 61114912 chr5,61113805,61114912,-,L1MA3,LINE,L1,-4699,2866,1751,61109106,61116662 +5 - chr5 61114909 61115433 chr5,61114909,61115433,-,L1MA3,LINE,L1,-5945,1620,1099,61108964,61116531 +6 - chr5 61115431 61115549 chr5,61115431,61115549,-,L1MA3,LINE,L1,-7433,132,12,61107998,61115560 +6 - chr5 61115545 61115836 chr5,61115545,61115836,+,L1MC4,LINE,L1,7451,7775,-267,61108095,61116103 -6 + chr5 61115882 61116167 chr5,61115882,61116167,+,HAL1,LINE,L1,404,699,-1808,61115479,61117975 -6 + chr5 61116242 61116559 chr5,61116242,61116559,+,HAL1,LINE,L1,842,1208,-1299,61115401,61117858 -6 + chr5 61116556 61116753 chr5,61116556,61116777,+,HAL1,LINE,L1,1513,1765,-742,61115044,61117519 -1 + chr5 61231913 61232040 chr5,61231664,61232130,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,61231664,61232130 +5 + chr5 61250557 61250862 chr5,61250463,61250876,-,L1PA10,LINE,L1,-681,5487,5061,61249782,61255936 +5 - chr5 61643327 61643400 chr5,61643068,61643482,+,MSTB,LTR,ERVL-MaLR,1,426,0,61643068,61643482 +3 + chr5 61667772 61667877 chr5,61667772,61668078,-,L2a,LINE,L2,0,3426,3048,61667772,61671125 +2 - chr5 61677623 61677691 chr5,61677622,61677721,-,MLT1N2,LTR,ERVL-MaLR,-354,208,107,61677268,61677827 +3 - chr5 61677639 61677691 chr5,61677639,61677807,-,LTR67B,LTR,ERVL,-452,168,1,61677187,61677807 +2 - chr5 61687936 61688014 chr5,61687936,61688181,-,UCON78,DNA,DNA,-189,254,1,61687747,61688181 +2 - chr5 61695983 61696018 chr5,61694964,61696076,+,L1MD2,LINE,L1,5042,6106,-651,61689923,61696727 -3 + chr5 61697912 61698268 chr5,61697645,61698268,+,L2a,LINE,L2,2549,3251,-175,61695097,61698443 -4 + chr5 61698281 61698432 chr5,61698281,61698759,+,L2a,LINE,L2,2853,3357,-69,61695429,61698828 -1 + chr5 61704705 61705015 chr5,61704705,61705015,-,AluSc8,SINE,Alu,0,311,1,61704705,61705015 -6 - chr5 61705962 61706072 chr5,61705962,61706072,-,MIRc,SINE,MIR,-1,267,147,61705961,61706218 -6 - chr5 61706161 61706334 chr5,61706161,61706334,+,L1ME4a,LINE,L1,5685,5827,-297,61700477,61706631 +6 + chr5 61730187 61730561 chr5,61730187,61730561,-,MSTB,LTR,ERVL-MaLR,0,426,32,61730187,61730592 -5 - chr5 61733567 61733634 chr5,61733567,61733634,-,Charlie16a,DNA,hAT-Charlie,-84,258,196,61733483,61733829 +6 - chr5 61750337 61750544 chr5,61750185,61750712,+,ERV3-16A3_I-int,LTR,ERVL,4545,5084,-142,61745641,61750854 +3 + chr5 61751670 61751743 chr5,61751349,61751743,+,LTR16,LTR,ERVL,37,433,-5,61751313,61751748 +2 + chr5 63980948 63981037 chr5,63974918,63981037,-,L1PA6,LINE,L1,-2,6152,4,63974916,63981040 +4 - chr5 65020038 65020128 chr5,65019758,65020128,+,L1ME3Cz,LINE,L1,298,754,-243,65019461,65020371 +1 + chr5 65020142 65020194 chr5,65020142,65020194,+,L1ME3C,LINE,L1,6068,6120,-3,65014075,65020197 +6 + chr5 65486893 65487048 chr5,65486806,65487352,-,MLT2A2,LTR,ERVL,0,554,3,65486806,65487354 +1 - chr5 66144344 66144377 chr5,66144344,66144377,+,G-rich,Low_complexity,Low_complexity,1,34,0,66144344,66144377 -6 + chr5 66144384 66144421 chr5,66144384,66144421,+,(CGGCTT)n,Simple_repeat,Simple_repeat,1,37,0,66144384,66144421 -6 + chr5 66206212 66206361 chr5,66206107,66206361,-,L2b,LINE,L2,-170,3217,2916,66205937,66209276 +5 - chr5 66206390 66206476 chr5,66206390,66206476,-,Charlie9,DNA,hAT-Charlie,-1,2756,2671,66206389,66209146 +6 - chr5 66206479 66206653 chr5,66206479,66206738,-,L2b,LINE,L2,-734,2685,2430,66205745,66209167 +2 - chr5 66318316 66318426 chr5,66318316,66318479,+,L3,LINE,CR1,3893,4096,-3,66314424,66318482 +4 + chr5 66662841 66662988 chr5,66662841,66663112,-,AluSq,SINE,Alu,-9,304,29,66662832,66663140 -5 - chr5 67001853 67002049 chr5,67001853,67002065,-,L3,LINE,CR1,-286,3813,3595,67001567,67005659 +2 - chr5 67180503 67180585 chr5,67180503,67180585,+,MER5B,DNA,hAT-Charlie,73,154,-24,67180431,67180609 -6 + chr5 67270159 67270182 chr5,67270159,67270586,-,LTR87,LTR,ERVL?,-1,623,185,67270158,67270770 -5 - chr5 67463809 67463901 chr5,67463220,67463901,-,L1M3,LINE,L1,-359,5809,5181,67462861,67469081 +5 - chr5 67465129 67465243 chr5,67465129,67465243,-,MLT1J,LTR,ERVL-MaLR,-14,498,389,67465115,67465631 +6 - chr5 67467987 67468026 chr5,67467987,67468026,+,(CATT)n,Simple_repeat,Simple_repeat,1,40,0,67467987,67468026 -6 + chr5 67632266 67632386 chr5,67632171,67632386,-,MER5C,DNA,hAT-Charlie,-96,217,8,67632075,67632393 +5 - chr5 67632402 67632633 chr5,67632402,67632700,-,AluYa5,SINE,Alu,-13,298,1,67632389,67632700 +2 - chr5 67634307 67634395 chr5,67634284,67634454,+,AluJb,SINE,Alu,1,167,-145,67634284,67634599 -3 + chr5 67646606 67646761 chr5,67646558,67646761,-,MIRc,SINE,MIR,-22,246,32,67646536,67646792 +4 - chr5 67701491 67701652 chr5,67701400,67703043,+,L1MC3,LINE,L1,346,2220,-4883,67701055,67707926 -3 + chr5 67797564 67797585 chr5,67797564,67797585,+,(AATA)n,Simple_repeat,Simple_repeat,1,21,0,67797564,67797585 +6 + chr5 67800833 67801058 chr5,67800833,67801063,+,MIRb,SINE,MIR,3,268,0,67800831,67801063 +5 + chr5 67800833 67800956 chr5,67800833,67801063,+,MIRb,SINE,MIR,3,268,0,67800831,67801063 -5 + chr5 67804646 67804778 chr5,67804566,67804778,+,MLT2B1,LTR,ERVL,230,501,-66,67804337,67804844 +2 + chr5 67817944 67818048 chr5,67817944,67823959,+,L1PA3,LINE,L1,135,6155,0,67817810,67823959 -1 + chr5 67818280 67818322 chr5,67817944,67823959,+,L1PA3,LINE,L1,135,6155,0,67817810,67823959 -1 + chr5 67823974 67824042 chr5,67823964,67824275,+,MSTB1-int,LTR,ERVL-MaLR,1334,1651,0,67822631,67824275 -3 + chr5 67889604 67889719 chr5,67889604,67895628,+,L1PA2,LINE,L1,124,6155,0,67889481,67895628 -1 + chr5 67889866 67890096 chr5,67889604,67895628,+,L1PA2,LINE,L1,124,6155,0,67889481,67895628 -1 + chr5 67902544 67902600 chr5,67902439,67902617,+,LTR50,LTR,ERVL,85,283,-512,67902355,67903129 -1 + chr5 68189876 68189938 chr5,68189797,68189938,-,L2b,LINE,L2,-18,3357,3230,68189779,68193167 -1 - chr5 68196370 68196489 chr5,68196328,68196627,-,AluSx,SINE,Alu,-14,298,1,68196314,68196627 -3 - chr5 68198236 68198278 chr5,68198236,68198278,+,(AACAAC)n,Simple_repeat,Simple_repeat,1,42,0,68198236,68198278 +6 + chr5 68433489 68433585 chr5,68433489,68433624,+,MIR,SINE,MIR,31,173,-89,68433459,68433713 -2 + chr5 68531690 68531742 chr5,68531386,68531742,+,THE1A,LTR,ERVL-MaLR,1,355,0,68531386,68531742 -5 + chr5 68531742 68531914 chr5,68531742,68531914,-,Tigger3a,DNA,TcMar-Tigger,-231,117,1,68531511,68531914 +6 - chr5 68960540 68960626 chr5,68960457,68960827,-,MSTA,LTR,ERVL-MaLR,0,428,1,68960457,68960827 +3 - chr5 68963437 68963483 chr5,68963437,68963684,+,L1ME4b,LINE,L1,473,722,-170,68962965,68963854 +4 + chr5 68967667 68967771 chr5,68967584,68967771,-,MIRb,SINE,MIR,-38,224,35,68967546,68967805 -2 - chr5 68970692 68970750 chr5,68970507,68970750,-,7SK,RNA,RNA,-87,244,3,68970420,68970752 +5 - chr5 68970800 68970931 chr5,68970800,68970931,-,Tigger15a,DNA,TcMar-Tigger,-533,182,43,68970267,68970973 +6 - chr5 69026755 69026862 chr5,69026607,69026862,+,LTR103b_Mam,LTR,ERV1?,241,506,-42,69026367,69026904 -5 + chr5 69038518 69038576 chr5,69038346,69038874,-,MER1A,DNA,hAT-Charlie,0,529,1,69038346,69038874 +5 - chr5 69043538 69043575 chr5,69043538,69043575,+,(TTTGT)n,Simple_repeat,Simple_repeat,1,38,0,69043538,69043575 -6 + chr5 69186359 69186810 chr5,69186279,69186810,-,L1MC4,LINE,L1,-118,7877,7116,69186161,69193925 +5 - chr5 69186851 69187133 chr5,69186851,69187133,-,AluSz6,SINE,Alu,-30,282,1,69186821,69187133 +6 - chr5 69187201 69187312 chr5,69187201,69187312,+,MER5A,DNA,hAT-Charlie,3,128,-38,69187199,69187350 -6 + chr5 69187379 69187506 chr5,69187379,69187506,-,AluSx,SINE,Alu,-179,133,7,69187200,69187512 +6 - chr5 69187734 69188033 chr5,69187734,69188033,-,AluJr,SINE,Alu,-16,296,9,69187718,69188041 +6 - chr5 69188062 69188369 chr5,69188062,69188369,-,AluSg,SINE,Alu,-4,306,2,69188058,69188370 +6 - chr5 69188369 69188666 chr5,69188369,69188666,-,AluSx1,SINE,Alu,-14,298,2,69188355,69188667 +6 - chr5 69485571 69485612 chr5,69485571,69485929,+,L2a,LINE,L2,3064,3426,0,69482508,69485929 -1 + chr5 70450319 70450353 chr5,70450319,70450508,+,(TA)n,Simple_repeat,Simple_repeat,1,198,0,70450319,70450508 +5 + chr5 71033412 71033450 chr5,71033412,71033450,+,(GT)n,Simple_repeat,Simple_repeat,1,38,0,71033412,71033450 -6 + chr5 71033571 71033643 chr5,71033571,71033832,+,AluSx1,SINE,Alu,42,302,-10,71033530,71033842 -2 + chr5 71034170 71034219 chr5,71033923,71034219,-,AluY,SINE,Alu,-14,297,2,71033909,71034220 +4 - chr5 71034385 71034400 chr5,71034385,71034632,-,LTR87,LTR,ERVL?,-42,582,302,71034343,71034933 +1 - chr5 71351874 71351916 chr5,71351874,71351916,+,(CA)n,Simple_repeat,Simple_repeat,1,42,0,71351874,71351916 -6 + chr5 71353278 71353579 chr5,71353278,71353579,+,AluSx4,SINE,Alu,1,301,-9,71353278,71353588 -5 + chr5 71353825 71353923 chr5,71353825,71353964,-,MLT1I,LTR,ERVL-MaLR,-265,146,11,71353560,71353974 +2 - chr5 71374596 71374682 chr5,71374570,71374874,-,L2b,LINE,L2,0,3387,3082,71374570,71377955 +3 - chr5 71374839 71374874 chr5,71374570,71374874,-,L2b,LINE,L2,0,3387,3082,71374570,71377955 +4 - chr5 72360690 72360986 chr5,72360671,72360986,-,AluSz,SINE,Alu,-3,309,1,72360668,72360986 -1 - chr5 72361186 72361624 chr5,72361186,72361624,-,MLT1G3,LTR,ERVL-MaLR,-5,543,29,72361181,72361652 -6 - chr5 72361658 72362030 chr5,72361658,72362030,+,L2b,LINE,L2,2830,3326,-49,72358829,72362079 +6 + chr5 72362162 72362505 chr5,72362162,72362505,+,MLT1A0,LTR,ERVL-MaLR,7,365,0,72362156,72362505 +6 + chr5 72440656 72440785 chr5,72440656,72440785,-,MER94,DNA,hAT-Blackjack,0,134,3,72440656,72440787 +6 - chr5 72440953 72441115 chr5,72440953,72441115,-,Charlie15a,DNA,hAT-Charlie,-41,183,3,72440912,72441117 +6 - chr5 72441348 72441464 chr5,72441348,72441464,+,MamRTE1,LINE,RTE-BovB,3193,3313,-499,72438156,72441963 -6 + chr5 72442314 72442387 chr5,72442314,72442486,+,MER5B,DNA,hAT-Charlie,7,173,-5,72442308,72442491 -1 + chr5 72574120 72574295 chr5,72574019,72574295,-,Charlie26a,DNA,hAT-Charlie,-15,310,17,72574004,72574311 +5 - chr5 72580812 72580977 chr5,72577317,72583458,+,L1PA4,LINE,L1,1,6155,0,72577317,72583458 -1 + chr5 72660595 72660669 chr5,72660595,72660814,+,MIR,SINE,MIR,41,262,0,72660555,72660814 -1 + chr5 72687112 72687257 chr5,72686984,72687257,-,Charlie23a,DNA,hAT-Charlie,0,339,55,72686984,72687311 +5 - chr5 72690545 72690664 chr5,72690545,72690664,-,MLT1J,LTR,ERVL-MaLR,-175,337,210,72690370,72690873 +5 - chr5 72690680 72690704 chr5,72690680,72690800,-,L1MC4,LINE,L1,0,8042,7919,72690680,72698718 +2 - chr5 72693600 72693758 chr5,72693600,72693758,-,MER5A1,DNA,hAT-Charlie,0,166,9,72693600,72693766 +6 - chr5 72761615 72761670 chr5,72761547,72761770,+,MIRb,SINE,MIR,20,251,-17,72761528,72761787 -1 + chr5 72762610 72762727 chr5,72762521,72763001,-,MLT2B1,LTR,ERVL,-7,513,4,72762514,72763004 +1 - chr5 72794405 72794457 chr5,72794343,72794457,+,MIRc,SINE,MIR,26,152,-116,72794318,72794573 -5 + chr5 72954067 72954274 chr5,72954067,72954567,-,Zaphod,DNA,hAT-Tip100,-3482,549,7,72950585,72954573 +1 - chr5 73132010 73132216 chr5,73132010,73132216,-,MIRb,SINE,MIR,-42,220,6,73131968,73132221 +6 - chr5 73150420 73150499 chr5,73150360,73150499,-,Tigger10,DNA,TcMar-Tigger,-473,1371,1224,73149887,73151722 +4 - chr5 73244711 73244820 chr5,73244685,73244954,-,AluSg,SINE,Alu,-8,302,34,73244677,73244987 -5 - chr5 73286487 73286599 chr5,73286219,73286628,+,MLT2B1,LTR,ERVL,1,461,-59,73286219,73286687 +3 + chr5 73287614 73287682 chr5,73287386,73287764,+,THE1C,LTR,ERVL-MaLR,1,375,0,73287386,73287764 +3 + chr5 73291590 73291659 chr5,73291361,73291676,+,L2a,LINE,L2,3058,3400,-26,73288304,73291702 +1 + chr5 73461533 73461613 chr5,73461513,73461613,+,L2c,LINE,L2,3250,3349,-38,73458264,73461651 -4 + chr5 73461614 73461625 chr5,73461614,73462159,+,LTR9D,LTR,ERV1,1,645,0,73461614,73462159 -2 + chr5 73778039 73778092 chr5,73777790,73778092,+,AluSc,SINE,Alu,1,294,-15,73777790,73778107 -5 + chr5 73786320 73786388 chr5,73786131,73786388,-,MIR,SINE,MIR,-10,252,5,73786121,73786392 +4 - chr5 73953518 73953671 chr5,73953518,73953671,+,MIR,SINE,MIR,12,160,-102,73953507,73953773 +6 + chr5 73953671 73954014 chr5,73953671,73954057,+,MLT1A,LTR,ERVL-MaLR,2,373,-1,73953670,73954058 +5 + chr5 74084068 74084167 chr5,74084066,74084284,+,MIR,SINE,MIR,5,255,-7,74084062,74084291 -5 + chr5 74102759 74102875 chr5,74102759,74102875,-,LTR83,LTR,ERVL,-75,705,594,74102684,74103468 +6 - chr5 74102949 74103070 chr5,74102949,74103070,-,LTR83,LTR,ERVL,-326,454,343,74102623,74103412 +6 - chr5 74103070 74103216 chr5,74103070,74103603,+,MER51A,LTR,ERV1,5,634,0,74103066,74103603 -1 + chr5 74307139 74307214 chr5,74306846,74307305,+,MSTB1,LTR,ERVL-MaLR,3,432,0,74306844,74307305 -3 + chr5 74328035 74328073 chr5,74328035,74328073,+,(ACCCCC)n,Simple_repeat,Simple_repeat,1,39,0,74328035,74328073 -6 + chr5 74338972 74339125 chr5,74338612,74339136,-,MER97b,DNA,hAT-Tip100,-193,856,278,74338419,74339413 -3 - chr5 74339984 74340048 chr5,74339936,74340048,-,MER97b,DNA,hAT-Tip100,-940,109,1,74338996,74340048 -2 - chr5 74917726 74917888 chr5,74917475,74917888,-,MLT1B,LTR,ERVL-MaLR,0,390,3,74917475,74917890 +5 - chr5 74919194 74919276 chr5,74919194,74919276,+,L2b,LINE,L2,3259,3343,-32,74915936,74919308 -6 + chr5 75017429 75017542 chr5,75017247,75017592,-,L1MCa,LINE,L1,-6079,429,52,75011168,75017643 +3 - chr5 75334947 75335010 chr5,75333500,75335010,+,LTR12C,LTR,ERV1,5,1579,0,75333496,75335010 -4 + chr5 75363978 75364022 chr5,75363978,75364022,+,(GT)n,Simple_repeat,Simple_repeat,1,44,0,75363978,75364022 +6 + chr5 75598959 75598981 chr5,75598959,75599248,+,AluSz,SINE,Alu,1,284,-28,75598959,75599276 -2 + chr5 75599127 75599248 chr5,75598959,75599248,+,AluSz,SINE,Alu,1,284,-28,75598959,75599276 -4 + chr5 75608817 75608878 chr5,75608494,75608878,-,L2a,LINE,L2,-83,3343,2910,75608411,75611787 -1 - chr5 75609271 75609470 chr5,75609271,75609470,-,AluJb,SINE,Alu,-20,292,85,75609251,75609554 -6 - chr5 76285901 76285921 chr5,76285901,76286113,-,MER58A,DNA,hAT-Charlie,0,224,5,76285901,76286117 +2 - chr5 76286707 76286803 chr5,76286623,76287002,-,THE1C,LTR,ERVL-MaLR,0,375,1,76286623,76287002 +3 - chr5 76606779 76607033 chr5,76606779,76607033,-,Tigger10,DNA,TcMar-Tigger,-44,1800,1524,76606735,76608556 +6 - chr5 76607186 76607292 chr5,76607186,76607292,-,Tigger10,DNA,TcMar-Tigger,-1302,542,436,76605884,76607727 +6 - chr5 76607423 76607611 chr5,76607423,76607611,-,Tigger10,DNA,TcMar-Tigger,-1599,245,50,76605824,76607660 +6 - chr5 76699356 76699496 chr5,76698857,76699501,-,L1MA7,LINE,L1,0,6291,5622,76698857,76705122 +3 - chr5 77074493 77074520 chr5,77074477,77074638,+,MIRb,SINE,MIR,88,257,-11,77074390,77074649 +5 + chr5 77087602 77087727 chr5,77087602,77087727,-,MLT1I,LTR,ERVL-MaLR,-16,395,261,77087586,77087987 -6 - chr5 77087759 77087869 chr5,77087759,77087869,-,MER63B,DNA,hAT-Blackjack,-3,433,312,77087756,77088180 -6 - chr5 77087870 77087916 chr5,77087870,77087917,-,MER63B,DNA,hAT-Blackjack,-352,84,38,77087518,77087954 -5 - chr5 77088060 77088472 chr5,77088060,77088691,-,LTR1B,LTR,ERV1,0,824,221,77088060,77088911 -1 - chr5 77089346 77089403 chr5,77089050,77089574,+,MER1A,DNA,hAT-Charlie,1,529,0,77089050,77089574 +3 + chr5 77092492 77092533 chr5,77092478,77092636,+,L4_B_Mam,LINE,RTE-X,4127,4275,-666,77088352,77093302 +3 + chr5 77098655 77098747 chr5,77098623,77099035,-,MSTD,LTR,ERVL-MaLR,0,396,2,77098623,77099036 -3 - chr5 77104525 77104724 chr5,77104323,77104724,+,MLT1A1,LTR,ERVL-MaLR,1,406,-2,77104323,77104726 +2 + chr5 77104817 77105233 chr5,77104817,77105233,-,L1ME1,LINE,L1,-30,6149,5712,77104787,77110944 -6 - chr5 77105233 77105392 chr5,77105233,77105585,+,MER47A,DNA,TcMar-Tigger,3,366,0,77105231,77105585 +5 + chr5 77105656 77105808 chr5,77105585,77106902,-,L1ME1,LINE,L1,-468,5711,4368,77105117,77111269 -5 - chr5 77134305 77134585 chr5,77133890,77134694,+,ERV3-16A3_I-int,LTR,ERVL,4093,4891,-335,77129798,77135029 +3 + chr5 77139300 77139468 chr5,77139300,77139468,+,MLT1H,LTR,ERVL-MaLR,382,549,0,77138919,77139468 +5 + chr5 77139469 77139511 chr5,77139469,77140551,-,L1MEd,LINE,L1,-5825,1261,123,77133644,77140673 -5 - chr5 77146117 77146294 chr5,77145220,77146294,+,MLT1E2-int,LTR,ERVL-MaLR,316,1484,-5,77144905,77146299 +2 + chr5 77146304 77146433 chr5,77146304,77146433,+,MLT1E2,LTR,ERVL-MaLR,8,143,-417,77146297,77146850 +6 + chr5 77147106 77147162 chr5,77147106,77147162,+,(GAT)n,Simple_repeat,Simple_repeat,1,56,0,77147106,77147162 +4 + chr5 77147657 77147853 chr5,77147657,77147853,+,MLT1E2,LTR,ERVL-MaLR,202,443,-184,77147456,77148037 +5 + chr5 77147910 77148074 chr5,77147910,77148074,-,MLT2F,LTR,ERVL,-314,349,186,77147596,77148259 -5 - chr5 77148233 77148523 chr5,77148233,77149844,-,L1M4,LINE,L1,-381,5803,4162,77147852,77154005 -5 - chr5 77151224 77151391 chr5,77151023,77151409,+,MLT1J2,LTR,ERVL-MaLR,1,415,-33,77151023,77151442 +5 + chr5 77165361 77165400 chr5,77164965,77165400,-,MER63B,DNA,hAT-Blackjack,-1,435,1,77164964,77165400 -2 - chr5 77166749 77166909 chr5,77166749,77166944,-,MIRb,SINE,MIR,-38,230,3,77166711,77166946 -5 - chr5 77942757 77942835 chr5,77942564,77942855,+,AluJb,SINE,Alu,1,299,-13,77942564,77942868 -5 + chr5 78342365 78342480 chr5,78342094,78342480,-,MER77B,LTR,ERVL,-159,772,275,78341935,78342754 +5 - chr5 78342480 78342506 chr5,78342480,78342506,+,(TGAT)n,Simple_repeat,Simple_repeat,1,26,0,78342480,78342506 -6 + chr5 78342506 78342600 chr5,78342506,78342651,-,MER77B,LTR,ERVL,-426,274,54,78342080,78342704 +2 - chr5 78358801 78358839 chr5,78358760,78358839,-,MIR,SINE,MIR,-6,256,168,78358754,78359006 +5 - chr5 78358903 78358985 chr5,78358903,78358985,-,L2b,LINE,L2,-17,3358,3272,78358886,78362256 +6 - chr5 78359392 78359688 chr5,78359392,78359688,-,AluSx4,SINE,Alu,-15,295,1,78359377,78359688 +6 - chr5 79777995 79778118 chr5,79777839,79778139,+,AluSg4,SINE,Alu,1,298,-12,79777839,79778151 -3 + chr5 79803838 79803891 chr5,79803679,79803913,+,AluJb,SINE,Alu,1,297,-15,79803679,79803928 -3 + chr5 79816120 79816190 chr5,79816036,79816435,-,MLT1I,LTR,ERVL-MaLR,-4,407,21,79816032,79816455 +1 - chr5 79942500 79942629 chr5,79942500,79942733,-,L2a,LINE,L2,-2,3424,3165,79942498,79945897 -4 - chr5 80052882 80052901 chr5,80052882,80052968,-,MIR3,SINE,MIR,-65,143,58,80052817,80053025 +2 - chr5 80066349 80066459 chr5,80066336,80066459,-,MIR,SINE,MIR,-50,212,90,80066286,80066548 +5 - chr5 80066459 80066624 chr5,80066459,80066624,+,AluJr,SINE,Alu,138,301,-11,80066322,80066635 -6 + chr5 80066624 80066702 chr5,80066624,80066702,-,MIR,SINE,MIR,-173,89,2,80066451,80066703 +6 - chr5 80067080 80067327 chr5,80067080,80067327,+,L1MA9,LINE,L1,6062,6310,-2,80061019,80067329 -6 + chr5 80067349 80067410 chr5,80067349,80067410,+,(AT)n,Simple_repeat,Simple_repeat,1,66,0,80067349,80067410 -6 + chr5 80071789 80071891 chr5,80071789,80071936,-,MER63A,DNA,hAT-Blackjack,-48,162,1,80071741,80071936 +2 - chr5 80083549 80083654 chr5,80083549,80083816,+,L2c,LINE,L2,3129,3386,-1,80080421,80083817 -1 + chr5 80128923 80129125 chr5,80128885,80129125,-,MLT1O,LTR,ERVL-MaLR,-196,346,81,80128689,80129205 -2 - chr5 80143851 80143883 chr5,80143851,80144538,-,L1MB8,LINE,L1,-14,6164,5463,80143837,80150000 -5 - chr5 80482293 80482854 chr5,80482120,80482854,+,L1MB8,LINE,L1,1208,1945,-4695,80480913,80487549 -5 + chr5 80482854 80483166 chr5,80482854,80483167,-,AluSx,SINE,Alu,-1,311,2,80482853,80483168 +2 - chr5 80485466 80485561 chr5,80485358,80485575,-,L1MC5a,LINE,L1,-12,2765,2542,80485346,80488116 +3 - chr5 80608623 80608945 chr5,80608578,80609126,-,MLT1E1A,LTR,ERVL-MaLR,0,680,1,80608578,80609126 +5 - chr5 80630313 80630341 chr5,80630281,80630341,+,MIRb,SINE,MIR,208,268,0,80630074,80630341 -5 + chr5 80630355 80630472 chr5,80630355,80630614,-,AluY,SINE,Alu,-5,306,48,80630350,80630661 +2 - chr5 80631202 80631302 chr5,80630991,80631302,+,AluSx,SINE,Alu,1,306,-6,80630991,80631308 -4 + chr5 80947697 80947738 chr5,80947590,80947738,+,L1MA10,LINE,L1,6169,6317,-17,80941422,80947755 -5 + chr5 80947787 80947970 chr5,80947787,80947970,-,MLT1J2,LTR,ERVL-MaLR,0,448,269,80947787,80948238 +6 - chr5 80948329 80948404 chr5,80948295,80948437,-,LTR104_Mam,LTR,Gypsy,-1317,192,62,80946978,80948498 +3 - chr5 80951426 80951480 chr5,80951426,80951577,-,MIR,SINE,MIR,-97,165,21,80951329,80951597 +2 - chr5 80952668 80952717 chr5,80952082,80952717,+,L1PA6,LINE,L1,5516,6152,-2,80946567,80952719 -4 + chr5 80952851 80952980 chr5,80952851,80953120,-,LTR16A,LTR,ERVL,-197,254,1,80952654,80953120 +1 - chr5 81114812 81114852 chr5,81114488,81114875,+,L2b,LINE,L2,2787,3375,0,81111702,81114875 -1 + chr5 81210121 81210180 chr5,81210121,81210598,-,LTR18B,LTR,ERVL,0,614,3,81210121,81210600 +2 - chr5 81219660 81219700 chr5,81219660,81219700,+,(TTTGT)n,Simple_repeat,Simple_repeat,1,41,0,81219660,81219700 -4 + chr5 81223315 81223360 chr5,81222730,81223360,+,L1ME3G,LINE,L1,4072,4781,-1365,81218659,81224725 -4 + chr5 81223360 81223475 chr5,81223360,81223656,+,AluY,SINE,Alu,2,297,-14,81223359,81223670 -2 + chr5 81237645 81237731 chr5,81237645,81237731,+,MER68C,LTR,ERVL,218,303,-116,81237428,81237847 -6 + chr5 81237733 81237768 chr5,81237733,81237768,+,(TACATG)n,Simple_repeat,Simple_repeat,1,35,0,81237733,81237768 -6 + chr5 81237946 81238052 chr5,81237946,81238052,-,MER5C,DNA,hAT-Charlie,-4,309,191,81237942,81238242 +6 - chr5 81238052 81238361 chr5,81238052,81238361,+,AluYf1,SINE,Alu,1,311,0,81238052,81238361 -6 + chr5 81238361 81238508 chr5,81238361,81238508,-,MER5C,DNA,hAT-Charlie,-123,190,2,81238238,81238509 +6 - chr5 81238695 81238931 chr5,81238695,81238931,+,L2b,LINE,L2,3036,3276,-99,81235660,81239030 -6 + chr5 81238990 81239042 chr5,81238990,81239042,+,(GATG)n,Simple_repeat,Simple_repeat,1,52,0,81238990,81239042 -6 + chr5 81244847 81245064 chr5,81244847,81245064,-,AluSx1,SINE,Alu,-8,304,89,81244839,81245152 +5 - chr5 81245272 81245409 chr5,81245272,81245428,+,MIRb,SINE,MIR,4,158,-110,81245269,81245538 -2 + chr5 81301287 81301388 chr5,81301262,81301388,+,L2b,LINE,L2,3017,3163,-212,81298246,81301600 -4 + chr5 81301404 81301487 chr5,81301404,81301487,+,L2b,LINE,L2,3239,3330,-45,81298166,81301532 -1 + chr5 81852163 81852192 chr5,81852163,81852192,+,(AACA)n,Simple_repeat,Simple_repeat,1,29,0,81852163,81852192 +6 + chr5 81991995 81992289 chr5,81991993,81992289,-,AluJo,SINE,Alu,-18,294,1,81991975,81992289 -1 - chr5 81992369 81992395 chr5,81992369,81992395,+,(TTTA)n,Simple_repeat,Simple_repeat,1,27,0,81992369,81992395 +6 + chr5 81992397 81992411 chr5,81992397,81992411,+,(ATTTT)n,Simple_repeat,Simple_repeat,2,43,0,81992396,81992411 +6 + chr5 81992411 81992481 chr5,81992411,81992703,-,AluSz,SINE,Alu,-18,294,1,81992393,81992703 -5 - chr5 82073117 82073351 chr5,82073117,82073351,-,MER112,DNA,hAT-Charlie,0,261,7,82073117,82073357 +6 - chr5 82073438 82073579 chr5,82073438,82073579,+,MIRb,SINE,MIR,7,151,-117,82073432,82073696 -6 + chr5 82545907 82546097 chr5,82545907,82546097,-,MamGypsy2-I,LTR,Gypsy,-48,4118,3922,82545859,82550018 +6 - chr5 82546231 82546310 chr5,82546231,82546543,+,L2a,LINE,L2,3097,3426,0,82543135,82546543 -1 + chr5 82940458 82940695 chr5,82940049,82940695,+,MER50,LTR,ERV1,1,711,-23,82940049,82940718 -5 + chr5 82940698 82940819 chr5,82940698,82940819,-,MLT1O,LTR,ERVL-MaLR,-381,161,35,82940317,82940853 +6 - chr5 83012285 83012390 chr5,83012190,83012390,+,MIRb,SINE,MIR,27,268,0,83012164,83012390 -5 + chr5 83012557 83012755 chr5,83012557,83012755,+,Charlie23a,DNA,hAT-Charlie,43,255,-84,83012515,83012839 -6 + chr5 83050259 83050714 chr5,83050259,83050714,+,MLT2F,LTR,ERVL,3,595,-68,83050257,83050782 -6 + chr5 83050877 83050964 chr5,83050877,83051156,+,L2a,LINE,L2,3069,3402,-24,83047809,83051180 -1 + chr5 84385888 84385940 chr5,84385885,84385940,+,GA-rich,Low_complexity,Low_complexity,1,55,0,84385885,84385940 +2 + chr5 84387822 84388103 chr5,84387726,84388103,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,84387726,84388103 +5 + chr5 84399585 84399652 chr5,84399562,84399975,-,L1ME3G,LINE,L1,-419,505,94,84399143,84400068 -5 - chr5 84417279 84417314 chr5,84415556,84417314,-,L1PA5,LINE,L1,0,6154,4319,84415556,84421632 -2 - chr5 84490658 84490765 chr5,84490601,84490912,+,L2b,LINE,L2,2956,3287,-139,84487646,84491051 +5 + chr5 85112342 85112366 chr5,85112341,85112366,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,85112341,85112366 -5 + chr5 85112370 85112654 chr5,85112370,85112654,-,AluSx,SINE,Alu,-30,282,1,85112340,85112654 +6 - chr5 85212958 85213132 chr5,85212841,85213132,+,L1ME3A,LINE,L1,4818,5110,-1036,85208024,85214168 -5 + chr5 85213184 85213214 chr5,85213184,85213214,-,L1P3,LINE,L1,-299,5873,5844,85212885,85219057 +6 - chr5 85213214 85213330 chr5,85213214,85213330,+,L1PA5,LINE,L1,6033,6146,-8,85207182,85213338 -6 + chr5 85213526 85213614 chr5,85213526,85214203,+,L1ME3A,LINE,L1,5477,6169,-4,85208050,85214207 -1 + chr5 85420028 85420451 chr5,85419945,85420474,+,MLT1H,LTR,ERVL-MaLR,8,528,-27,85419938,85420501 -1 + chr5 85446974 85447222 chr5,85446784,85447222,-,L1M5,LINE,L1,-1679,4467,4007,85445105,85451228 -1 - chr5 85447382 85447415 chr5,85447382,85447415,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,85447382,85447415 +6 + chr5 85447580 85447664 chr5,85447580,85447664,-,L1M5,LINE,L1,-2461,3685,3598,85445119,85451261 -6 - chr5 85447736 85447758 chr5,85447736,85448383,-,L1M5,LINE,L1,-2651,3495,2839,85445085,85451221 -5 - chr5 85663232 85663641 chr5,85657593,85663641,-,L1PA2,LINE,L1,0,6155,127,85657593,85663767 -1 - chr5 85849141 85849199 chr5,85849141,85849233,-,MLT1H,LTR,ERVL-MaLR,0,549,454,85849141,85849686 -5 - chr5 86305695 86305727 chr5,86305695,86305727,+,(TGTGCA)n,Simple_repeat,Simple_repeat,1,34,0,86305695,86305727 -6 + chr5 86368656 86368723 chr5,86368656,86368723,+,A-rich,Low_complexity,Low_complexity,1,72,0,86368656,86368723 +6 + chr5 86380683 86380714 chr5,86380683,86380714,+,(TTGAT)n,Simple_repeat,Simple_repeat,1,31,0,86380683,86380714 -6 + chr5 86380715 86380877 chr5,86380715,86380877,-,AluJb,SINE,Alu,-19,293,132,86380696,86381008 +6 - chr5 86380932 86381045 chr5,86380932,86381045,+,L2a,LINE,L2,3311,3426,0,86377622,86381045 -6 + chr5 86748759 86749205 chr5,86748759,86749205,-,MLT1H,LTR,ERVL-MaLR,-3,546,14,86748756,86749218 -6 - chr5 86797745 86797838 chr5,86797745,86797860,+,LTR79,LTR,ERVL,41,159,-368,86797705,86798228 +4 + chr5 86800152 86800221 chr5,86800152,86800221,-,AmnSINE1,SINE,5S-Deu-L2,0,575,503,86800152,86800723 -6 - chr5 86800248 86800280 chr5,86800248,86800346,-,MIR1_Amn,SINE,MIR,-73,157,58,86800175,86800403 -5 - chr5 87105415 87105538 chr5,87105273,87105538,-,LTR33A_,LTR,ERVL,0,531,231,87105273,87105768 -3 - chr5 87120148 87120194 chr5,87119926,87120277,+,THE1B,LTR,ERVL-MaLR,3,364,0,87119924,87120277 +1 + chr5 87137601 87137635 chr5,87137601,87137635,+,GA-rich,Low_complexity,Low_complexity,1,35,0,87137601,87137635 +6 + chr5 87205408 87205683 chr5,87205391,87205683,-,AluSx1,SINE,Alu,-14,298,2,87205377,87205684 +5 - chr5 87216606 87218330 chr5,87212103,87218330,-,L1PA7,LINE,L1,-27,6442,1,87212076,87218330 +5 - chr5 87218332 87218350 chr5,87218332,87218716,-,MER113,DNA,hAT-Charlie,-135,386,1,87218197,87218716 +2 - chr5 87239254 87239358 chr5,87239254,87239358,-,FLAM_C,SINE,Alu,-47,86,1,87239207,87239358 +6 - chr5 87239613 87239822 chr5,87239613,87239822,-,MLT1J1-int,LTR,ERVL-MaLR,-26,1361,1151,87239587,87240972 +1 - chr5 87239858 87239961 chr5,87239858,87239961,-,MLT1J1-int,LTR,ERVL-MaLR,-233,1176,1072,87239625,87241032 +6 - chr5 87240028 87240145 chr5,87240028,87240201,-,MLT1J1,LTR,ERVL-MaLR,-266,178,3,87239762,87240203 +1 - chr5 87715472 87715634 chr5,87715350,87717207,-,HUERS-P1-int,LTR,ERV1,-650,5613,3700,87714700,87720906 +3 - chr5 88269760 88269844 chr5,88269760,88269844,+,(TAGA)n,Simple_repeat,Simple_repeat,1,88,0,88269760,88269844 +6 + chr5 88270506 88270523 chr5,88270499,88270523,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,88270499,88270523 +1 + chr5 88275911 88276064 chr5,88274376,88276064,-,L1MEg,LINE,L1,-4197,1887,70,88270179,88276133 -2 - chr5 88276065 88276196 chr5,88276065,88276196,+,AluJr,SINE,Alu,2,131,-181,88276064,88276377 +6 + chr5 88276207 88276222 chr5,88276207,88276948,+,L1ME3E,LINE,L1,3285,4162,-1984,88272923,88278932 +5 + chr5 88282042 88282106 chr5,88281784,88282187,+,MSTB,LTR,ERVL-MaLR,1,426,0,88281784,88282187 +3 + chr5 88282715 88282866 chr5,88282583,88283084,-,Tigger7,DNA,TcMar-Tigger,-4,546,4,88282579,88283087 -3 - chr5 88283010 88283084 chr5,88282583,88283084,-,Tigger7,DNA,TcMar-Tigger,-4,546,4,88282579,88283087 -2 - chr5 88285741 88285816 chr5,88285639,88285816,+,L3,LINE,CR1,1677,1877,-2222,88283963,88288038 +2 + chr5 88285816 88286067 chr5,88285816,88286078,+,L3,LINE,CR1,2186,2456,-1643,88283631,88287721 +5 + chr5 88287436 88287657 chr5,88287259,88287699,+,MLT1D,LTR,ERVL-MaLR,8,505,0,88287252,88287699 +5 + chr5 88291425 88291476 chr5,88291425,88291720,+,AluSx1,SINE,Alu,1,294,-18,88291425,88291738 +4 + chr5 88409258 88409323 chr5,88409258,88409323,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,65,0,88409258,88409323 -6 + chr5 88410073 88410135 chr5,88410034,88410135,+,MIRc,SINE,MIR,155,255,-13,88409880,88410148 +2 + chr5 88417299 88417348 chr5,88417299,88417348,+,L2a,LINE,L2,3377,3425,-1,88413923,88417349 +6 + chr5 88434144 88434278 chr5,88434144,88434281,-,MLT1J,LTR,ERVL-MaLR,-260,252,115,88433884,88434395 +2 - chr5 88436030 88436043 chr5,88436030,88436164,+,MIR,SINE,MIR,122,261,-1,88435909,88436165 -2 + chr5 88438985 88439090 chr5,88438906,88439270,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,88438906,88439270 +1 - chr5 88498673 88498697 chr5,88498415,88498968,-,LTR16D2,LTR,ERVL,0,572,1,88498415,88498968 +1 - chr5 88508282 88508354 chr5,88508014,88508485,-,L2c,LINE,L2,-69,3318,2813,88507945,88511297 +3 - chr5 88611664 88611776 chr5,88611584,88611790,+,L1MDa,LINE,L1,280,480,-6160,88611305,88617950 -1 + chr5 88666301 88666325 chr5,88666301,88666325,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,88666301,88666325 -5 + chr5 88673094 88673111 chr5,88673094,88673111,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,88673094,88673111 -6 + chr5 88684764 88684803 chr5,88684764,88684803,+,(TC)n,Simple_repeat,Simple_repeat,1,39,0,88684764,88684803 -1 + chr5 88690965 88691004 chr5,88690965,88691004,+,(TTGGT)n,Simple_repeat,Simple_repeat,1,39,0,88690965,88691004 -6 + chr5 88705523 88705656 chr5,88705516,88705810,+,AluSz,SINE,Alu,1,293,-19,88705516,88705829 +3 + chr5 88883328 88883360 chr5,88883298,88883360,+,(GGA)n,Simple_repeat,Simple_repeat,1,62,0,88883298,88883360 +1 + chr5 88892263 88892277 chr5,88892263,88892423,+,MIR,SINE,MIR,63,221,-41,88892201,88892464 +4 + chr5 88966435 88966690 chr5,88966435,88966690,-,L2c,LINE,L2,-213,3174,2914,88966222,88969603 -6 - chr5 89075096 89075308 chr5,89074981,89075308,+,MLT1J1,LTR,ERVL-MaLR,83,436,-8,89074899,89075316 +2 + chr5 89168250 89168533 chr5,89168218,89168533,-,AluJo,SINE,Alu,-7,305,1,89168211,89168533 -2 - chr5 89304980 89305087 chr5,89304980,89305087,-,L2b,LINE,L2,0,3375,3276,89304980,89308362 -6 - chr5 89418807 89418892 chr5,89418611,89418971,+,THE1C,LTR,ERVL-MaLR,1,373,-2,89418611,89418973 +1 + chr5 89465916 89466026 chr5,89465906,89466026,-,L2b,LINE,L2,-20,3355,3238,89465886,89469263 -5 - chr5 89469922 89470039 chr5,89469765,89470068,+,AluSc8,SINE,Alu,1,301,-10,89469765,89470078 -1 + chr5 89581209 89581286 chr5,89580822,89581286,-,L2b,LINE,L2,0,3375,2869,89580822,89584154 -1 - chr5 89677450 89677701 chr5,89676675,89681484,+,L1MA1,LINE,L1,7,4917,-2648,89676669,89684132 +5 + chr5 89900737 89901037 chr5,89900737,89901037,-,AluSx,SINE,Alu,-12,300,1,89900725,89901037 -6 - chr5 89944910 89944985 chr5,89944572,89945167,-,L1ME4a,LINE,L1,-218,5906,5267,89944354,89950433 -1 - chr5 89947101 89947178 chr5,89947101,89947178,+,(CTC)n,Simple_repeat,Simple_repeat,1,72,0,89947101,89947178 +6 + chr5 89947427 89947573 chr5,89947427,89947810,-,L2a,LINE,L2,-43,3383,2935,89947384,89950744 -5 - chr5 90158339 90158433 chr5,90158220,90158433,-,MER58A,DNA,hAT-Charlie,0,224,2,90158220,90158434 +5 - chr5 90235429 90235535 chr5,90235411,90235564,-,MER63A,DNA,hAT-Blackjack,-57,153,1,90235354,90235564 +3 - chr5 90289896 90290071 chr5,90289818,90290215,-,MLT1B,LTR,ERVL-MaLR,0,390,1,90289818,90290215 +1 - chr5 90353037 90353266 chr5,90352888,90353266,-,LTR39,LTR,ERV1,0,783,400,90352888,90353665 +5 - chr5 90353323 90353530 chr5,90353323,90353786,-,LTR39,LTR,ERV1,-390,393,1,90352933,90353786 +2 - chr5 90410216 90410384 chr5,90410216,90410384,-,MER5A,DNA,hAT-Charlie,-5,184,3,90410211,90410386 -6 - chr5 90410568 90410669 chr5,90410568,90410683,+,L2b,LINE,L2,3226,3356,-19,90407343,90410702 +5 + chr5 91223419 91223698 chr5,91223399,91223698,-,AluSc,SINE,Alu,-11,298,1,91223388,91223698 -1 - chr5 91223698 91223761 chr5,91223698,91223761,-,MER5B,DNA,hAT-Charlie,-124,54,1,91223574,91223761 -6 - chr5 91226475 91226890 chr5,91226330,91226890,+,MLT1K,LTR,ERVL-MaLR,19,595,0,91226312,91226890 -5 + chr5 91303110 91303161 chr5,91303110,91303209,+,MIR1_Amn,SINE,MIR,88,183,-47,91303023,91303256 -2 + chr5 91311026 91311057 chr5,91311026,91311057,-,L2b,LINE,L2,0,3375,3353,91311026,91314409 +6 - chr5 91311057 91311270 chr5,91311057,91311270,-,MER30,DNA,hAT-Charlie,0,230,1,91311057,91311270 +6 - chr5 91311270 91311345 chr5,91311270,91311345,-,L2b,LINE,L2,-23,3352,3273,91311247,91314617 +6 - chr5 91311384 91311497 chr5,91311384,91311497,+,L2b,LINE,L2,3261,3375,0,91308124,91311497 -6 + chr5 91311782 91311955 chr5,91311782,91311955,+,AmnSINE1,SINE,5S-Deu-L2,1,171,-404,91311782,91312359 -6 + chr5 91312815 91313042 chr5,91312815,91313042,+,MIRb,SINE,MIR,20,248,-20,91312796,91313062 -6 + chr5 91313138 91313229 chr5,91313138,91313324,+,MamRTE1,LINE,RTE-BovB,3202,3395,-417,91309937,91313741 -2 + chr5 91313638 91313777 chr5,91313501,91313807,+,AluY,SINE,Alu,1,304,-7,91313501,91313814 -3 + chr5 91314080 91314128 chr5,91313947,91314128,+,L2c,LINE,L2,3203,3377,-10,91310745,91314138 -4 + chr5 91355380 91355428 chr5,91355118,91355428,-,AluSx,SINE,Alu,0,312,1,91355118,91355428 -1 - chr5 91355428 91355595 chr5,91355428,91355595,-,MLT1A,LTR,ERVL-MaLR,-213,161,2,91355215,91355596 -6 - chr5 91355905 91355944 chr5,91355905,91355944,-,AluJo,SINE,Alu,-190,122,94,91355715,91356037 -6 - chr5 91355944 91356026 chr5,91355944,91356250,-,AluSz,SINE,Alu,-6,306,1,91355938,91356250 -5 - chr5 92082626 92082659 chr5,92082626,92082659,+,A-rich,Low_complexity,Low_complexity,1,33,0,92082626,92082659 +6 + chr5 92199537 92199628 chr5,92199485,92199772,-,L1M5,LINE,L1,-926,5220,4918,92198559,92204689 -1 - chr5 92204605 92204684 chr5,92204024,92204870,-,L1ME2,LINE,L1,-2728,3418,2511,92201296,92207380 -3 - chr5 92404836 92404904 chr5,92404836,92404904,-,FLAM_C,SINE,Alu,-79,54,1,92404757,92404904 -6 - chr5 92405021 92405129 chr5,92405021,92405129,-,L2c,LINE,L2,0,3387,3277,92405021,92408405 -6 - chr5 92405949 92406029 chr5,92405949,92406029,+,MADE1,DNA,TcMar-Mariner,1,80,0,92405949,92406029 +6 + chr5 92406302 92406644 chr5,92406302,92407392,+,Tigger1,DNA,TcMar-Tigger,2,1088,-1330,92406301,92408722 +5 + chr5 92410256 92410361 chr5,92410081,92410373,+,AluJr,SINE,Alu,1,291,-21,92410081,92410394 -5 + chr5 92479379 92479426 chr5,92479216,92479610,-,Tigger2a,DNA,TcMar-Tigger,-1,433,4,92479215,92479613 -5 - chr5 92507348 92507465 chr5,92507210,92507513,+,AluJb,SINE,Alu,2,303,-9,92507209,92507522 -3 + chr5 92654848 92654923 chr5,92654548,92654923,-,THE1C,LTR,ERVL-MaLR,0,375,3,92654548,92654925 -1 - chr5 92654923 92654936 chr5,92654923,92654961,+,(AT)n,Simple_repeat,Simple_repeat,2,40,0,92654922,92654961 +4 + chr5 92669870 92669924 chr5,92669760,92669924,-,MLT1J2,LTR,ERVL-MaLR,-73,375,198,92669687,92670121 -1 - chr5 92670351 92670453 chr5,92670351,92670453,-,MIRb,SINE,MIR,0,268,164,92670351,92670616 -6 - chr5 92826255 92826511 chr5,92824175,92827377,+,HERVH-int,LTR,ERV1,1,2995,-4718,92824175,92832095 +1 + chr5 92913719 92913859 chr5,92913560,92913859,-,AluSz6,SINE,Alu,-15,297,1,92913545,92913859 +4 - chr5 92913859 92913885 chr5,92913859,92913921,+,MIRb,SINE,MIR,116,174,-94,92913744,92914015 -2 + chr5 92914006 92914134 chr5,92913944,92914134,-,LTR33,LTR,ERVL,-298,217,11,92913646,92914144 +4 - chr5 93019663 93019793 chr5,93019645,93019793,+,MARNA,DNA,TcMar-Mariner,414,579,-7,93019232,93019800 -5 + chr5 93019898 93020136 chr5,93019898,93020309,-,MLT1B,LTR,ERVL-MaLR,0,390,1,93019898,93020309 +2 - chr5 93410358 93410697 chr5,93410358,93410697,+,MER1B,DNA,hAT-Charlie,3,339,0,93410356,93410697 -6 + chr5 93541872 93542062 chr5,93541791,93542062,+,MER96B,DNA,hAT-Tip100,1,284,-133,93541791,93542195 -5 + chr5 93542347 93542552 chr5,93542347,93542552,-,MER20,DNA,hAT-Charlie,-12,207,2,93542335,93542553 +6 - chr5 93543018 93543661 chr5,93543018,93543661,+,L1MEg,LINE,L1,395,1059,-5025,93542624,93548686 -5 + chr5 93543664 93544024 chr5,93543664,93544094,+,Kanga1,DNA,TcMar-Tc2,2,439,-1306,93543663,93545400 -2 + chr5 93544795 93544915 chr5,93544641,93544939,+,AluSc,SINE,Alu,1,300,-9,93544641,93544948 -3 + chr5 93553755 93553863 chr5,93553755,93553876,-,MamRTE1,LINE,RTE-BovB,-3532,280,159,93550223,93554034 +5 - chr5 93580596 93580689 chr5,93580596,93580689,+,(TCTCCC)n,Simple_repeat,Simple_repeat,1,94,0,93580596,93580689 -6 + chr5 93581275 93581294 chr5,93581275,93581294,+,(CGG)n,Simple_repeat,Simple_repeat,1,19,0,93581275,93581294 -1 + chr5 93601688 93601781 chr5,93601688,93601781,+,A-rich,Low_complexity,Low_complexity,1,96,0,93601688,93601781 +6 + chr5 93743221 93743378 chr5,93743221,93743378,+,L2a,LINE,L2,3268,3419,-7,93739954,93743385 +6 + chr5 93860669 93860945 chr5,93860642,93860945,-,AluSc8,SINE,Alu,0,311,1,93860642,93860945 +5 - chr5 93861300 93861328 chr5,93861300,93861328,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,93861300,93861328 -6 + chr5 93862615 93862649 chr5,93862615,93862649,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,93862615,93862649 -6 + chr5 93863274 93863565 chr5,93863274,93863565,-,AluJr,SINE,Alu,-21,291,4,93863253,93863568 +6 - chr5 94611906 94611937 chr5,94611663,94611969,+,AluJr,SINE,Alu,1,307,-5,94611663,94611974 -5 + chr5 94615550 94615570 chr5,94615398,94615570,+,MIR,SINE,MIR,7,187,-75,94615392,94615645 -4 + chr5 94792667 94792717 chr5,94792667,94792717,+,(CAACAA)n,Simple_repeat,Simple_repeat,1,53,0,94792667,94792717 +6 + chr5 94979151 94979491 chr5,94978964,94979491,+,MLT1J1-int,LTR,ERVL-MaLR,793,1380,-7,94978172,94979498 +1 + chr5 94979530 94979607 chr5,94979530,94979890,+,MLT1J1,LTR,ERVL-MaLR,66,444,0,94979465,94979890 +4 + chr5 95708635 95708835 chr5,95708196,95709910,-,HERVS71-int,LTR,ERV1,-1192,7786,6070,95707004,95715979 +3 - chr5 95716982 95717048 chr5,95716714,95717048,+,THE1B,LTR,ERVL-MaLR,1,364,0,95716714,95717048 -5 + chr5 95836028 95836106 chr5,95836028,95836106,+,GA-rich,Low_complexity,Low_complexity,1,73,0,95836028,95836106 -6 + chr5 95849309 95849508 chr5,95849212,95849508,-,AluSz,SINE,Alu,-16,296,1,95849196,95849508 -1 - chr5 95849523 95849594 chr5,95849523,95849594,+,(TATC)n,Simple_repeat,Simple_repeat,1,74,0,95849523,95849594 +6 + chr5 95849564 95849602 chr5,95849564,95849602,+,(CCAT)n,Simple_repeat,Simple_repeat,1,38,0,95849564,95849602 +6 + chr5 95849637 95849724 chr5,95849637,95849724,+,MIR,SINE,MIR,172,262,-6,95849466,95849730 +6 + chr5 95852232 95852649 chr5,95850982,95852649,+,LTR12C,LTR,ERV1,2,1579,0,95850981,95852649 +1 + chr5 95852586 95852649 chr5,95850982,95852649,+,LTR12C,LTR,ERV1,2,1579,0,95850981,95852649 -1 + chr5 95852649 95852714 chr5,95852649,95852762,+,MamRep1527,LTR,LTR,645,761,-208,95852005,95852970 +1 + chr5 95852649 95852721 chr5,95852649,95852762,+,MamRep1527,LTR,LTR,645,761,-208,95852005,95852970 -1 + chr5 95852792 95852890 chr5,95852776,95852890,+,L1MEh,LINE,L1,9,127,-2108,95852768,95854998 +2 + chr5 95852886 95852926 chr5,95852886,95853198,+,L1MEh,LINE,L1,504,854,-1381,95852383,95854579 +4 + chr5 95874423 95874519 chr5,95874331,95874725,+,MLT1F1,LTR,ERVL-MaLR,144,559,-10,95874188,95874735 +5 + chr5 95965044 95965251 chr5,95965044,95965391,-,MER102b,DNA,hAT-Charlie,0,341,1,95965044,95965391 +2 - chr5 95980473 95980527 chr5,95980473,95981330,-,MER45C,DNA,hAT-Tip100,-1,952,1,95980472,95981330 +2 - chr5 96110934 96111005 chr5,96110886,96111716,-,MER21C,LTR,ERVL,-23,915,1,96110863,96111716 -3 - chr5 96213346 96213411 chr5,96213123,96213411,-,L1MD,LINE,L1,-3717,2429,2139,96209406,96215549 +5 - chr5 96213437 96213500 chr5,96213437,96213500,-,L1ME4b,LINE,L1,-21,871,821,96213416,96214320 +6 - chr5 96213500 96213789 chr5,96213500,96213807,+,AluJr,SINE,Alu,1,299,-13,96213500,96213820 -2 + chr5 96215184 96215519 chr5,96215184,96215531,-,Charlie1a,DNA,hAT-Charlie,0,1455,1086,96215184,96216616 -5 - chr5 96278588 96278736 chr5,96278504,96278736,+,LTR78,LTR,ERV1,1064,1297,-7,96277441,96278743 +2 + chr5 96308724 96308882 chr5,96303464,96309906,-,L1PA7,LINE,L1,-3,6466,11,96303461,96309916 -3 - chr5 96318621 96318770 chr5,96318621,96318770,+,MIRc,SINE,MIR,1,147,-121,96318621,96318891 +6 + chr5 96318858 96318943 chr5,96318858,96318943,-,MIR,SINE,MIR,-21,241,160,96318837,96319102 -6 - chr5 96318943 96319018 chr5,96318943,96319354,-,MSTB,LTR,ERVL-MaLR,0,426,1,96318943,96319354 -5 - chr5 96584524 96585033 chr5,96584524,96585071,-,LTR50,LTR,ERVL,-19,776,3,96584505,96585073 -4 - chr5 96814028 96814250 chr5,96813986,96814250,-,MLT1E1A,LTR,ERVL-MaLR,-2,678,386,96813984,96814635 +5 - chr5 96814264 96814310 chr5,96814264,96814390,-,MLT1E1A,LTR,ERVL-MaLR,-431,129,1,96813833,96814390 +2 - chr5 96822937 96823117 chr5,96822772,96823339,-,MLT1E1A,LTR,ERVL-MaLR,-1,679,1,96822771,96823339 +3 - chr5 96848692 96848823 chr5,96848350,96850642,+,L1M2,LINE,L1,3204,5544,-747,96845147,96851389 -5 + chr5 96873286 96873334 chr5,96873269,96873334,-,L2a,LINE,L2,0,3426,3359,96873269,96876692 +4 - chr5 96934122 96934504 chr5,96934085,96934504,-,L2a,LINE,L2,0,3426,2969,96934085,96937472 +4 - chr5 96934531 96934592 chr5,96934531,96934592,-,L2a,LINE,L2,-526,2893,2833,96934005,96937424 +6 - chr5 97089075 97089204 chr5,97088919,97089287,+,THE1B,LTR,ERVL-MaLR,1,364,0,97088919,97089287 +1 + chr5 97103026 97103094 chr5,97102936,97103132,-,MIRb,SINE,MIR,-40,228,19,97102896,97103150 -3 - chr5 97188090 97188105 chr5,97188008,97188105,-,L2c,LINE,L2,-1,3386,3278,97188007,97191382 +5 - chr5 97201842 97201880 chr5,97201661,97202165,+,L1MD3,LINE,L1,7471,7987,-8,97194191,97202173 -1 + chr5 97227868 97227957 chr5,97227789,97228144,-,MLT1A0,LTR,ERVL-MaLR,0,365,5,97227789,97228148 +1 - chr5 97431744 97431800 chr5,97431590,97431800,-,L2a,LINE,L2,0,3426,3196,97431590,97434995 -2 - chr5 97436553 97436680 chr5,97436519,97436680,+,L2b,LINE,L2,3214,3379,-8,97433306,97436688 +2 + chr5 97899638 97899753 chr5,97897158,97903296,-,L1PA4,LINE,L1,-3,6152,2,97897155,97903297 -5 - chr5 97922131 97922471 chr5,97922050,97922471,-,MLT1B,LTR,ERVL-MaLR,0,390,1,97922050,97922471 -2 - chr5 98160700 98160792 chr5,98160686,98160821,+,PRIMA41-int,LTR,ERV1,5967,6101,-538,98154720,98161359 -3 + chr5 98161137 98161193 chr5,98161137,98161213,+,HERVK14-int,LTR,ERVK,5792,5867,-229,98155346,98161442 -1 + chr5 98770683 98770804 chr5,98770683,98770804,+,MER50,LTR,ERV1,499,604,-130,98770185,98770934 -5 + chr5 98994807 98995013 chr5,98994583,98995136,+,Ricksha_c,DNA,MULE-MuDR,355,908,-1140,98994229,98996276 +5 + chr5 100401441 100401560 chr5,100401295,100401560,-,ERV3-16A3_I-int,LTR,ERVL,-1271,3955,3691,100400024,100405250 -1 - chr5 100401586 100401620 chr5,100401586,100401620,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,100401586,100401620 +6 + chr5 100401670 100401783 chr5,100401670,100401830,-,ERV3-16A3_LTR,LTR,ERVL,-268,154,5,100401402,100401834 -4 - chr5 100407255 100407373 chr5,100407228,100407544,+,MLT1G1,LTR,ERVL-MaLR,190,543,-6,100407039,100407550 +3 + chr5 100450082 100451058 chr5,100450082,100451058,-,L1MA5A,LINE,L1,-1781,4362,3365,100448301,100454422 +5 - chr5 100451060 100451097 chr5,100451060,100452481,+,L1MA5A,LINE,L1,4354,5791,-506,100446707,100452987 -2 + chr5 100518530 100518611 chr5,100517988,100520303,+,L1PBb,LINE,L1,728,3162,-3753,100517261,100524056 -3 + chr5 100526306 100526349 chr5,100526221,100526565,+,L1PB,LINE,L1,2375,2718,-3428,100523847,100529993 -3 + chr5 100657819 100657882 chr5,100656580,100657882,+,LTR12C,LTR,ERV1,2,1579,0,100656579,100657882 -4 + chr5 100657922 100657970 chr5,100657922,100658015,+,L2b,LINE,L2,3282,3373,-2,100654641,100658017 -1 + chr5 102146315 102146503 chr5,102146251,102146503,-,MLT1B,LTR,ERVL-MaLR,-16,374,121,102146235,102146623 -2 - chr5 102146494 102146572 chr5,102146494,102146918,+,MLT1D,LTR,ERVL-MaLR,41,505,0,102146454,102146918 +5 + chr5 102500700 102500826 chr5,102500700,102500929,+,L1MCc,LINE,L1,839,1078,-5345,102499862,102506274 +4 + chr5 102505269 102505332 chr5,102505070,102505407,+,THE1A,LTR,ERVL-MaLR,1,355,0,102505070,102505407 +1 + chr5 102605738 102605923 chr5,102605738,102606043,+,AluSp,SINE,Alu,1,306,-7,102605738,102606050 +4 + chr5 102606096 102606197 chr5,102606043,102606218,+,AluSq,SINE,Alu,134,310,-3,102605910,102606221 +5 + chr5 102671229 102671559 chr5,102671229,102677260,+,L1PA2,LINE,L1,126,6155,0,102671104,102677260 -1 + chr5 103253328 103253479 chr5,103253214,103253479,-,LTR84b,LTR,ERVL,-340,421,128,103252874,103253606 +4 - chr5 103540943 103541003 chr5,103540747,103541003,-,MER113A,DNA,hAT-Charlie,-6,308,6,103540741,103541008 +4 - chr5 104079911 104080124 chr5,104074362,104080381,-,L1PA2,LINE,L1,-6,6149,127,104074356,104080507 -1 - chr5 104104174 104104213 chr5,104103175,104104213,-,L1MB3,LINE,L1,0,6419,5401,104103175,104109613 -2 - chr5 104104213 104104287 chr5,104104213,104105088,-,LTR12,LTR,ERV1,0,826,1,104104213,104105088 -4 - chr5 104105360 104105403 chr5,104105089,104105502,+,MSTB,LTR,ERVL-MaLR,1,426,0,104105089,104105502 +5 + chr5 104435317 104435445 chr5,104435317,104435445,+,(TA)n,Simple_repeat,Simple_repeat,1,132,0,104435317,104435445 +6 + chr5 104736761 104736915 chr5,104735301,104737003,-,Tigger1,DNA,TcMar-Tigger,-691,1727,2,104734610,104737004 +5 - chr5 104739303 104739412 chr5,104739303,104739422,-,MamGypsy2-I,LTR,Gypsy,-60,4106,3986,104739243,104743407 +2 - chr5 104743692 104743854 chr5,104743580,104744394,+,ERV3-16A3_I-int,LTR,ERVL,725,1556,-3670,104742856,104748064 -5 + chr5 104744035 104744191 chr5,104743580,104744394,+,ERV3-16A3_I-int,LTR,ERVL,725,1556,-3670,104742856,104748064 -5 + chr5 104746541 104746609 chr5,104746458,104746818,-,THE1B,LTR,ERVL-MaLR,-1,363,3,104746457,104746820 +1 - chr5 104773641 104773740 chr5,104773619,104774091,-,ERV3-16A3_I-int,LTR,ERVL,-1793,3433,2987,104771826,104777077 -1 - chr5 104773619 104773822 chr5,104773619,104774091,-,ERV3-16A3_I-int,LTR,ERVL,-1793,3433,2987,104771826,104777077 +1 - chr5 104799306 104799705 chr5,104799242,104799705,+,MER70A,LTR,ERVL,1,472,0,104799242,104799705 +2 + chr5 104886858 104886975 chr5,104886827,104887041,+,MSTB2,LTR,ERVL-MaLR,244,457,0,104886584,104887041 -3 + chr5 104917492 104917898 chr5,104917447,104917992,-,MLT1E1A,LTR,ERVL-MaLR,0,680,121,104917447,104918112 +5 - chr5 104973295 104973658 chr5,104973295,104973913,-,LTR67B,LTR,ERVL,-9,611,7,104973286,104973919 +2 - chr5 104979691 104979776 chr5,104979619,104979923,-,MSTB2-int,LTR,ERVL-MaLR,-14,1637,1334,104979605,104981256 +3 - chr5 105246297 105246364 chr5,105246214,105246579,-,THE1D,LTR,ERVL-MaLR,0,381,1,105246214,105246579 +1 - chr5 105392761 105392970 chr5,105391971,105393225,-,LTR2752,LTR,ERV1,0,1263,1,105391971,105393225 +1 - chr5 106815414 106815455 chr5,106815414,106815455,+,(TTAT)n,Simple_repeat,Simple_repeat,1,42,0,106815414,106815455 -6 + chr5 106844061 106844214 chr5,106843920,106844223,+,LTR78,LTR,ERV1,442,762,-542,106843479,106844765 -3 + chr5 106969884 106969932 chr5,106969414,106969932,-,LTR16E2,LTR,ERVL,-5,563,62,106969409,106969993 +4 - chr5 106980764 106980869 chr5,106979354,106981781,+,HERVH-int,LTR,ERV1,555,2995,-4718,106978800,106986499 -1 + chr5 107010940 107011014 chr5,107010874,107011198,-,THE1D,LTR,ERVL-MaLR,-53,328,1,107010821,107011198 +1 - chr5 107699841 107700050 chr5,107699841,107700050,-,MER20,DNA,hAT-Charlie,0,219,2,107699841,107700051 +5 - chr5 107702193 107702307 chr5,107702193,107702327,+,MIR3,SINE,MIR,4,152,-56,107702190,107702383 -2 + chr5 107708887 107708900 chr5,107708586,107708900,+,L1ME3,LINE,L1,5814,6161,-1,107702773,107708901 -4 + chr5 107710361 107710508 chr5,107710307,107710745,-,MLT2B4,LTR,ERVL,-40,480,1,107710267,107710745 +3 - chr5 107716633 107716841 chr5,107716468,107717644,+,L1MCa,LINE,L1,23,1190,-5318,107716446,107722962 -1 + chr5 108727825 108728018 chr5,108727824,108728018,-,MIRb,SINE,MIR,-58,210,5,108727766,108728022 +5 - chr5 108818145 108818260 chr5,108818145,108818461,+,AluJb,SINE,Alu,1,305,-7,108818145,108818468 -2 + chr5 108830613 108830756 chr5,108830466,108830756,-,L2c,LINE,L2,-530,2889,2592,108829936,108833347 +4 - chr5 109237147 109237210 chr5,109237147,109237210,-,MamGypLTR1c,LTR,Gypsy,-79,724,660,109237068,109237869 +6 - chr5 109237457 109237822 chr5,109237457,109237822,+,THE1C,LTR,ERVL-MaLR,1,375,0,109237457,109237822 -6 + chr5 109319759 109320040 chr5,109319504,109320040,-,MER54A,LTR,ERVL,-120,781,138,109319384,109320177 +4 - chr5 109320040 109320348 chr5,109320040,109320348,+,AluSz,SINE,Alu,3,311,-1,109320038,109320349 -6 + chr5 109320348 109320491 chr5,109320348,109320491,-,MER54A,LTR,ERVL,-507,137,1,109319841,109320491 +6 - chr5 109321394 109321614 chr5,109321002,109322028,-,L1MC4,LINE,L1,-1,8041,6654,109321001,109328681 +3 - chr5 109323965 109324240 chr5,109323965,109324240,+,LTR84b,LTR,ERVL,103,390,-371,109323863,109324611 -6 + chr5 109324240 109324458 chr5,109324240,109324458,+,MER30,DNA,hAT-Charlie,1,230,0,109324240,109324458 -6 + chr5 109324458 109324818 chr5,109324458,109324818,+,LTR84b,LTR,ERVL,391,761,0,109324068,109324818 -6 + chr5 109325079 109325154 chr5,109325079,109325154,-,MER5A,DNA,hAT-Charlie,-10,179,105,109325069,109325258 +6 - chr5 109325946 109325974 chr5,109325946,109325974,+,(AAAC)n,Simple_repeat,Simple_repeat,1,30,0,109325946,109325974 -6 + chr5 109326116 109326262 chr5,109326116,109326262,-,LTR79,LTR,ERVL,-2,525,379,109326114,109326640 +6 - chr5 109326286 109326369 chr5,109326286,109326458,-,FordPrefect,DNA,hAT-Tip100,0,1683,1513,109326286,109327970 +1 - chr5 109467423 109467461 chr5,109467423,109467461,+,L2c,LINE,L2,3313,3350,-37,109464111,109467498 +6 + chr5 109467765 109467817 chr5,109467765,109467817,+,L1ME4b,LINE,L1,66,106,-786,109467700,109468603 +6 + chr5 109467817 109467952 chr5,109467817,109468125,+,AluSq2,SINE,Alu,1,308,-5,109467817,109468130 +5 + chr5 109498767 109499053 chr5,109498701,109499053,+,L1ME4a,LINE,L1,5568,5952,-172,109493134,109499225 +2 + chr5 109688257 109688329 chr5,109688257,109688897,-,LTR41,LTR,ERVL,-47,721,3,109688210,109688899 +1 - chr5 111008874 111008899 chr5,111008654,111009065,-,L1PA7,LINE,L1,-2,6152,5742,111008652,111014806 +1 - chr5 111077372 111077465 chr5,111077352,111077465,-,L2b,LINE,L2,-17,3358,3241,111077335,111080705 +4 - chr5 111084358 111084479 chr5,111084190,111084479,-,MLT1I,LTR,ERVL-MaLR,-17,394,106,111084173,111084584 +4 - chr5 111269975 111270089 chr5,111269655,111270217,-,LTR81C,LTR,Gypsy,-556,597,1,111269099,111270217 +1 - chr5 111282893 111283036 chr5,111282747,111283157,-,MER47B,DNA,TcMar-Tigger,-4,414,2,111282743,111283158 +3 - chr5 111302238 111302567 chr5,111302238,111308262,+,L1HS,LINE,L1,131,6154,-1,111302108,111308263 -1 + chr5 111727945 111728066 chr5,111727738,111728082,+,MLT1F1,LTR,ERVL-MaLR,1,367,-181,111727738,111728263 +3 + chr5 111732660 111732679 chr5,111732660,111732679,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,111732660,111732679 +6 + chr5 111733144 111733363 chr5,111733144,111733363,-,L2b,LINE,L2,0,3375,3158,111733144,111736520 -6 - chr5 111734408 111734484 chr5,111734408,111734484,-,LFSINE_Vert,SINE,tRNA,-75,384,309,111734333,111734792 -6 - chr5 111738551 111738666 chr5,111738551,111738666,-,L2a,LINE,L2,-3,3423,3296,111738548,111741961 -6 - chr5 111738715 111739098 chr5,111738715,111739098,+,MLT1B,LTR,ERVL-MaLR,1,386,-4,111738715,111739102 +6 + chr5 111940037 111940064 chr5,111939440,111940064,+,Tigger17a,DNA,TcMar-Tigger,7,654,0,111939434,111940064 +1 + chr5 111969452 111969511 chr5,111968950,111969511,+,L3,LINE,CR1,2885,3568,-531,111966066,111970042 +1 + chr5 111969526 111969560 chr5,111969526,111969811,+,L3,LINE,CR1,3713,4088,-11,111965814,111969822 +4 + chr5 112162627 112162723 chr5,112162627,112162723,-,L2c,LINE,L2,-8,3379,3275,112162619,112165997 -6 - chr5 112173642 112173688 chr5,112173642,112173941,-,AluSc,SINE,Alu,-11,298,1,112173631,112173941 -4 - chr5 112196671 112196996 chr5,112196489,112197302,+,L2b,LINE,L2,1030,1921,-1498,112195460,112198800 +5 + chr5 112206929 112207063 chr5,112206833,112207965,+,L1PA16,LINE,L1,4526,5679,-487,112202308,112208452 +5 + chr5 112228283 112228352 chr5,112228151,112228370,+,MER102b,DNA,hAT-Charlie,17,235,-106,112228135,112228476 +1 + chr5 112256863 112256906 chr5,112256668,112256906,+,L1ME4a,LINE,L1,5852,6110,-14,112250817,112256920 +2 + chr5 112630391 112630502 chr5,112630310,112630502,+,MLT1K,LTR,ERVL-MaLR,59,274,-321,112630252,112630823 +2 + chr5 112630624 112630702 chr5,112630624,112630761,-,HAL1ME,LINE,L1,-2258,207,67,112628366,112630827 -5 - chr5 112632004 112632100 chr5,112631974,112632352,-,MSTD,LTR,ERVL-MaLR,0,396,3,112631974,112632354 -5 - chr5 112893333 112893415 chr5,112893127,112893415,+,AluSx1,SINE,Alu,1,288,-24,112893127,112893439 +1 + chr5 112894956 112895258 chr5,112894956,112895258,+,AluSx3,SINE,Alu,1,302,-9,112894956,112895267 +6 + chr5 112896242 112896531 chr5,112896242,112896553,+,AluSx1,SINE,Alu,6,308,-4,112896237,112896557 +5 + chr5 112898023 112898080 chr5,112897776,112898080,+,AluSz,SINE,Alu,1,304,-8,112897776,112898088 +1 + chr5 113323028 113323273 chr5,113322830,113323351,+,MLT1F,LTR,ERVL-MaLR,7,548,0,113322824,113323351 +1 + chr5 113428660 113428681 chr5,113428310,113428681,+,LTR16,LTR,ERVL,1,381,-57,113428310,113428738 +2 + chr5 113436310 113436538 chr5,113436310,113436538,+,MER4D1,LTR,ERV1,1,235,-665,113436310,113437203 +5 + chr5 113436519 113437087 chr5,113436519,113437087,+,MER4D1,LTR,ERV1,139,868,-32,113436381,113437119 +6 + chr5 114576099 114576125 chr5,114576099,114578487,-,Tigger1,DNA,TcMar-Tigger,0,2418,5,114576099,114578491 -4 - chr5 115087892 115087935 chr5,115087791,115087935,+,ERVL-E-int,LTR,ERVL,4918,5061,-165,115082874,115088100 -5 + chr5 115088084 115088475 chr5,115088084,115088553,+,LTR16C,LTR,ERVL,1,489,0,115088084,115088553 -1 + chr5 115149569 115149596 chr5,115149569,115149596,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,115149569,115149596 -6 + chr5 115204063 115204150 chr5,115204063,115204150,-,L3,LINE,CR1,-590,3509,3423,115203473,115207572 +6 - chr5 115204212 115204398 chr5,115204212,115204398,-,MER5A,DNA,hAT-Charlie,-3,186,1,115204209,115204398 +6 - chr5 115204534 115204796 chr5,115204534,115204796,+,L1M5,LINE,L1,5432,5714,-410,115199103,115205206 -6 + chr5 115205523 115205632 chr5,115205523,115205632,+,MIR3,SINE,MIR,36,145,-63,115205488,115205695 -6 + chr5 115205741 115205925 chr5,115205741,115205925,+,L1ME3A,LINE,L1,5540,5733,-391,115200202,115206316 -6 + chr5 115205950 115205998 chr5,115205950,115205998,-,MADE1,DNA,TcMar-Mariner,-28,52,1,115205922,115205998 +6 - chr5 115206089 115206152 chr5,115206089,115206152,+,(ATATCT)n,Simple_repeat,Simple_repeat,1,66,0,115206089,115206152 -6 + chr5 115262800 115262840 chr5,115262800,115262840,+,(CCGCTCA)n,Simple_repeat,Simple_repeat,1,42,0,115262800,115262840 +6 + chr5 115691475 115691585 chr5,115691475,115691585,+,Tigger19a,DNA,TcMar-Tigger,213,320,-3,115691263,115691588 -6 + chr5 115692040 115692167 chr5,115692040,115692334,+,AluJb,SINE,Alu,2,290,-22,115692039,115692356 -1 + chr5 115755887 115756009 chr5,115755887,115756009,+,MER102b,DNA,hAT-Charlie,9,118,-223,115755879,115756232 +6 + chr5 115756013 115756286 chr5,115756013,115756511,+,L1ME1,LINE,L1,5652,6169,-10,115750362,115756521 +5 + chr5 116084238 116084360 chr5,116084238,116084360,+,L2a,LINE,L2,3245,3401,-25,116080994,116084385 -6 + chr5 116084782 116084826 chr5,116084782,116084826,+,(TA)n,Simple_repeat,Simple_repeat,1,45,0,116084782,116084826 -6 + chr5 116085199 116085228 chr5,116085199,116085228,+,(GGTGG)n,Simple_repeat,Simple_repeat,1,29,0,116085199,116085228 -6 + chr5 116449644 116449774 chr5,116449644,116449774,+,MER126,DNA,DNA,203,349,-100,116449442,116449874 +1 + chr5 116471614 116471673 chr5,116471614,116471693,-,MIR3,SINE,MIR,-1,207,128,116471613,116471820 -5 - chr5 116590975 116591179 chr5,116590906,116591179,+,MLT1A,LTR,ERVL-MaLR,166,374,0,116590741,116591179 +2 + chr5 116591182 116591292 chr5,116591182,116591292,+,L1ME3G,LINE,L1,828,923,-1,116590355,116591293 +6 + chr5 116742991 116743107 chr5,116742698,116743107,+,MLT1H,LTR,ERVL-MaLR,39,477,-72,116742660,116743179 -5 + chr5 116743107 116743388 chr5,116743107,116743415,+,AluSp,SINE,Alu,1,307,-6,116743107,116743421 -2 + chr5 116821007 116821123 chr5,116821007,116821123,+,MSTA,LTR,ERVL-MaLR,290,401,-27,116820718,116821150 -6 + chr5 116830125 116830187 chr5,116830073,116830291,-,LTR33B,LTR,ERVL,-236,267,51,116829837,116830341 +1 - chr5 117415567 117415739 chr5,117415567,117416187,-,L2,LINE,L2,-771,2648,1973,117414796,117418159 -4 - chr5 117437524 117437619 chr5,117437274,117437699,+,MSTB1,LTR,ERVL-MaLR,1,430,-2,117437274,117437701 +3 + chr5 117455263 117455454 chr5,117454728,117456383,-,L1PA17,LINE,L1,-5416,1733,283,117449312,117456665 -1 - chr5 117478981 117479303 chr5,117476944,117479303,+,Tigger1,DNA,TcMar-Tigger,2,2418,0,117476943,117479303 +2 + chr5 117925008 117925128 chr5,117924937,117925128,-,MLT1B,LTR,ERVL-MaLR,0,390,190,117924937,117925317 -1 - chr5 118187465 118187502 chr5,118187224,118187502,-,L1MC2,LINE,L1,-1,6343,6063,118187223,118193564 -1 - chr5 118206720 118206971 chr5,118206561,118207022,+,HAL1,LINE,L1,1532,2027,-480,118205030,118207502 +5 + chr5 118282575 118282727 chr5,118281980,118283545,+,SVA_C,Retroposon,SVA,1,1373,-11,118281980,118283556 +1 + chr5 118283713 118283910 chr5,118283706,118283910,+,MLT1B,LTR,ERVL-MaLR,191,390,0,118283516,118283910 +2 + chr5 118284064 118284277 chr5,118284064,118284277,-,L2b,LINE,L2,-286,3089,2880,118283778,118287156 -6 - chr5 118284293 118284528 chr5,118284293,118284528,-,L2b,LINE,L2,-812,2607,2357,118283481,118286884 -6 - chr5 118284569 118284741 chr5,118284569,118284741,-,Charlie1b,DNA,hAT-Charlie,0,523,331,118284569,118285071 -6 - chr5 118468156 118468229 chr5,118467991,118468229,+,MLT1J,LTR,ERVL-MaLR,3,254,-258,118467989,118468487 -5 + chr5 118468262 118468321 chr5,118468262,118468321,+,BLACKJACK,DNA,hAT-Blackjack,1,60,-2909,118468262,118471230 -6 + chr5 118472063 118472189 chr5,118471976,118472509,+,LTR48B,LTR,ERV1,1,644,0,118471976,118472509 -3 + chr5 118472849 118472906 chr5,118472591,118473023,-,Tigger2,DNA,TcMar-Tigger,0,2718,2273,118472591,118475295 +3 - chr5 118522627 118522795 chr5,118522627,118522795,-,Charlie16a,DNA,hAT-Charlie,-112,230,51,118522515,118522845 +6 - chr5 118545858 118546149 chr5,118545817,118546351,-,MLT1G3,LTR,ERVL-MaLR,0,595,10,118545817,118546360 +5 - chr5 118575669 118575686 chr5,118575669,118575789,-,MIR3,SINE,MIR,-82,126,17,118575587,118575805 -4 - chr5 118577040 118577155 chr5,118576841,118577155,-,AluY,SINE,Alu,0,311,1,118576841,118577155 -2 - chr5 118577173 118577194 chr5,118577173,118577581,-,LTR78,LTR,ERV1,-15,1289,863,118577158,118578443 -4 - chr5 118580554 118580648 chr5,118580554,118580674,+,MamRTE1,LINE,RTE-BovB,2165,2293,-1519,118578390,118582193 +4 + chr5 118609739 118609830 chr5,118609642,118609830,+,MER119,DNA,hAT-Charlie,400,583,0,118609243,118609830 +2 + chr5 118760546 118760730 chr5,118760546,118760730,-,MIR3,SINE,MIR,-17,191,4,118760529,118760733 +6 - chr5 118785424 118785459 chr5,118785424,118785520,-,L2c,LINE,L2,-9,3378,3281,118785415,118788800 +1 - chr5 119006347 119006373 chr5,119006129,119006373,+,L1MC3,LINE,L1,6745,6964,-821,118999385,119007194 -5 + chr5 119006373 119006630 chr5,119006373,119006661,+,AluJr,SINE,Alu,3,306,-6,119006371,119006667 -2 + chr5 119006758 119006861 chr5,119006661,119007434,+,L1MC3,LINE,L1,6965,7783,-2,118999697,119007436 -3 + chr5 119007074 119007205 chr5,119006661,119007434,+,L1MC3,LINE,L1,6965,7783,-2,118999697,119007436 -3 + chr5 119020094 119020240 chr5,119020094,119020257,+,AluJo,SINE,Alu,136,296,-16,119019959,119020273 -2 + chr5 120245448 120245633 chr5,120245330,120245759,+,MSTA,LTR,ERVL-MaLR,5,428,0,120245326,120245759 -5 + chr5 120345927 120346313 chr5,120345927,120346313,-,LTR16A,LTR,ERVL,-49,402,1,120345878,120346313 +6 - chr5 120404755 120404837 chr5,120404677,120405066,-,MSTD,LTR,ERVL-MaLR,-2,394,1,120404675,120405066 +1 - chr5 120781218 120781506 chr5,120781182,120781694,-,MER39,LTR,ERV1,-6,701,1,120781176,120781694 -1 - chr5 121205105 121205130 chr5,121205105,121205201,-,L1MCc,LINE,L1,-3433,3508,3408,121201672,121208608 -4 - chr5 121313961 121314204 chr5,121313709,121314275,-,L1MEb,LINE,L1,-5467,603,25,121308242,121314299 -1 - chr5 121322550 121322607 chr5,121322358,121322619,+,THE1C,LTR,ERVL-MaLR,1,268,-107,121322358,121322726 +1 + chr5 121324041 121324070 chr5,121322740,121324489,-,L1MEg,LINE,L1,-2160,3986,2110,121320580,121326598 -3 - chr5 121325589 121325745 chr5,121325589,121325745,+,MIR,SINE,MIR,77,254,-14,121325513,121325759 +6 + chr5 121347693 121347751 chr5,121347674,121347751,-,MLT1D,LTR,ERVL-MaLR,-175,330,254,121347499,121348004 -2 - chr5 121356806 121357115 chr5,121356623,121357115,+,MLT1F2,LTR,ERVL-MaLR,5,653,-1,121356619,121357116 +2 + chr5 121357115 121357264 chr5,121357115,121357264,-,MIR,SINE,MIR,-12,250,75,121357103,121357338 -6 - chr5 121363002 121363571 chr5,121362665,121363571,+,L1MCc,LINE,L1,17,911,-5512,121362649,121369083 +1 + chr5 121363574 121363713 chr5,121363574,121363713,+,L1MCc,LINE,L1,4670,4806,-2135,121358905,121365848 +6 + chr5 121363848 121363894 chr5,121363848,121363894,+,(ATTTAT)n,Simple_repeat,Simple_repeat,1,48,0,121363848,121363894 +6 + chr5 121363894 121364064 chr5,121363894,121364064,+,L1MD,LINE,L1,4144,4327,-1819,121359751,121365883 +6 + chr5 121364049 121364372 chr5,121364049,121364372,+,L1MCc,LINE,L1,5415,5770,-1171,121358635,121365543 +6 + chr5 121364372 121364401 chr5,121364372,121364401,+,(TA)n,Simple_repeat,Simple_repeat,1,29,0,121364372,121364401 +6 + chr5 121364401 121364964 chr5,121364401,121364964,+,L1MCc,LINE,L1,5771,6351,-623,121358631,121365587 +6 + chr5 122128762 122129243 chr5,122128711,122129243,-,MLT2A2,LTR,ERVL,-1,452,1,122128710,122129243 +5 - chr5 122321291 122321383 chr5,122321103,122321383,-,MER33,DNA,hAT-Charlie,-22,302,8,122321081,122321390 +5 - chr5 122321494 122321565 chr5,122321494,122321565,+,L2c,LINE,L2,3259,3335,-52,122318236,122321617 -6 + chr5 122369914 122370015 chr5,122369914,122370031,+,MIRb,SINE,MIR,34,161,-107,122369881,122370138 -2 + chr5 122371357 122371407 chr5,122371330,122371407,-,L3,LINE,CR1,-96,4003,3926,122371234,122375332 +4 - chr5 122371706 122371777 chr5,122371656,122371891,+,MIRb,SINE,MIR,8,268,0,122371649,122371891 -3 + chr5 122383470 122383563 chr5,122377544,122383563,-,L1PA2,LINE,L1,-5,6150,128,122377539,122383690 +4 - chr5 122436497 122436661 chr5,122436490,122436661,+,MER104,DNA,TcMar-Tc2,4,174,-7,122436487,122436668 -5 + chr5 122454376 122454509 chr5,122454192,122454516,-,MamGypLTR1b,LTR,Gypsy,0,782,420,122454192,122454935 +3 - chr5 122476788 122477090 chr5,122475917,122478731,-,HERVH-int,LTR,ERV1,-4718,2995,1,122471199,122478731 +1 - chr5 122478586 122478731 chr5,122475917,122478731,-,HERVH-int,LTR,ERV1,-4718,2995,1,122471199,122478731 +1 - chr5 122478731 122478846 chr5,122478731,122478846,-,LTR7,LTR,ERV1,0,472,358,122478731,122479203 +6 - chr5 122640445 122640491 chr5,122640445,122640898,+,L3,LINE,CR1,2599,3150,-949,122637847,122641847 -2 + chr5 122641133 122641237 chr5,122640898,122641319,+,MSTC,LTR,ERVL-MaLR,1,428,0,122640898,122641319 -3 + chr5 122699390 122699446 chr5,122699220,122699446,-,Tigger19a,DNA,TcMar-Tigger,-70,253,14,122699150,122699459 +5 - chr5 122699468 122699601 chr5,122699468,122699601,+,Tigger19a,DNA,TcMar-Tigger,45,182,-141,122699424,122699742 -6 + chr5 122705426 122705469 chr5,122705278,122705614,-,MamGypLTR3a,LTR,Gypsy,-563,418,72,122704715,122705685 +3 - chr5 122722214 122722323 chr5,122722202,122722673,+,MLT1J-int,LTR,ERVL-MaLR,782,1387,0,122721421,122722673 -3 + chr5 122726035 122726066 chr5,122726035,122726170,+,MIR,SINE,MIR,98,249,-13,122725938,122726183 -2 + chr5 122728342 122728399 chr5,122728224,122728722,+,MLT1D,LTR,ERVL-MaLR,1,505,0,122728224,122728722 -3 + chr5 122730489 122730685 chr5,122730442,122730835,-,MLT1K,LTR,ERVL-MaLR,-6,589,174,122730436,122731008 +1 - chr5 122833355 122833624 chr5,122833355,122833624,-,MER33,DNA,hAT-Charlie,-10,314,1,122833345,122833624 -6 - chr5 123054463 123054570 chr5,123054413,123054570,+,LTR67B,LTR,ERVL,26,185,-435,123054388,123055005 +2 + chr5 124306230 124306291 chr5,124304231,124307204,+,HERVH-int,LTR,ERV1,60,2995,-4718,124304172,124311922 -5 + chr5 124314317 124314378 chr5,124313857,124314381,+,MER44B,DNA,TcMar-Tigger,1,550,0,124313857,124314381 -3 + chr5 124386229 124386273 chr5,124383570,124387045,+,L1MB3,LINE,L1,1226,4769,-1610,124382345,124388655 -1 + chr5 124400220 124400334 chr5,124400197,124400334,-,FLAM_C,SINE,Alu,-8,135,1,124400189,124400334 -2 - chr5 124400401 124400642 chr5,124400401,124400642,-,LTR103_Mam,LTR,ERV1?,-2,473,235,124400399,124400876 -6 - chr5 124405023 124405079 chr5,124405023,124405152,+,MamTip3,DNA,hAT-Tip100,1,130,-370,124405023,124405522 -1 + chr5 124460195 124460263 chr5,124460195,124460263,+,Plat_L3,LINE,CR1,3115,3184,-402,124457081,124460665 -6 + chr5 124460335 124460434 chr5,124460335,124460434,+,Plat_L3,LINE,CR1,3297,3393,-193,124457039,124460627 -6 + chr5 124492775 124492827 chr5,124490444,124492827,-,L1PA8,LINE,L1,-3924,2429,11,124486520,124492837 +5 - chr5 124492964 124493185 chr5,124492964,124493418,-,MLT1L,LTR,ERVL-MaLR,0,610,122,124492964,124493539 +2 - chr5 124512269 124512492 chr5,124512269,124512549,-,LTR33,LTR,ERVL,-208,307,16,124512061,124512564 +2 - chr5 124710205 124710239 chr5,124710205,124710239,+,GA-rich,Low_complexity,Low_complexity,1,35,0,124710205,124710239 +6 + chr5 124829472 124829687 chr5,124829432,124829687,-,AluSc,SINE,Alu,-2,307,44,124829430,124829730 -1 - chr5 124869520 124869802 chr5,124869520,124869802,-,L4_A_Mam,LINE,RTE-X,-285,4705,4394,124869235,124874195 +6 - chr5 124869822 124869914 chr5,124869822,124869978,+,MIRb,SINE,MIR,111,267,-1,124869712,124869979 -1 + chr5 125201977 125202284 chr5,125201977,125202284,+,L2a,LINE,L2,3061,3423,-3,125198917,125202287 +6 + chr5 125202338 125202530 chr5,125202338,125202540,+,MLT1J,LTR,ERVL-MaLR,1,209,-303,125202338,125202843 +5 + chr5 125368568 125368618 chr5,125368426,125368618,+,L2b,LINE,L2,3006,3201,-186,125365421,125368804 +1 + chr5 125368618 125368807 chr5,125368618,125368807,-,L1MA1,LINE,L1,0,6302,6091,125368618,125374897 -5 - chr5 125368763 125368807 chr5,125368618,125368807,-,L1MA1,LINE,L1,0,6302,6091,125368618,125374897 +5 - chr5 125368807 125368903 chr5,125368807,125368903,+,L2b,LINE,L2,3202,3316,-71,125365606,125368974 +6 + chr5 125368807 125368903 chr5,125368807,125368903,+,L2b,LINE,L2,3202,3316,-71,125365606,125368974 -6 + chr5 125370524 125370823 chr5,125370524,125370823,+,MamSINE1,SINE,tRNA-RTE,1,288,-2,125370524,125370825 -6 + chr5 125382859 125383200 chr5,125381977,125383200,+,MLT-int,LTR,ERVL-MaLR,210,1623,-112,125381768,125383312 -5 + chr5 125383201 125383249 chr5,125383201,125383249,+,(ATTA)n,Simple_repeat,Simple_repeat,1,49,0,125383201,125383249 -6 + chr5 125383268 125383455 chr5,125383268,125383643,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,125383268,125383643 -1 + chr5 125395379 125395661 chr5,125395366,125395661,-,AluSx,SINE,Alu,-13,299,1,125395353,125395661 +5 - chr5 125395661 125395673 chr5,125395661,125395673,+,(TTA)n,Simple_repeat,Simple_repeat,2,13,0,125395660,125395673 -6 + chr5 125395852 125395906 chr5,125395852,125395906,+,L2c,LINE,L2,3336,3387,0,125392517,125395906 -6 + chr5 125493261 125493280 chr5,125493055,125493280,+,LTR16B1,LTR,ERVL,1,218,-262,125493055,125493542 +1 + chr5 125493284 125493335 chr5,125493284,125493372,+,ERV3-16A3_I-int,LTR,ERVL,2531,2603,-2623,125490754,125495995 +4 + chr5 125498845 125498956 chr5,125498845,125499385,-,L2,LINE,L2,-639,2780,2257,125498206,125501641 -4 - chr5 125519528 125519569 chr5,125517505,125519569,-,L1ME2,LINE,L1,-8,6156,4090,125517497,125523658 -2 - chr5 125519569 125519595 chr5,125519569,125519731,+,MSTD,LTR,ERVL-MaLR,230,383,-13,125519340,125519744 +4 + chr5 125602134 125602216 chr5,125602134,125602216,+,L1PA8,LINE,L1,6090,6171,-1,125596045,125602217 +6 + chr5 126076800 126077120 chr5,126076764,126077162,-,MSTB,LTR,ERVL-MaLR,-6,420,1,126076758,126077162 +5 - chr5 126179616 126179766 chr5,126179616,126180115,+,MLT1J-int,LTR,ERVL-MaLR,654,1180,-207,126178963,126180322 +4 + chr5 126433751 126433986 chr5,126433751,126434156,-,MARNA,DNA,TcMar-Mariner,-3,583,208,126433748,126434363 +2 - chr5 126458968 126459072 chr5,126458968,126459132,-,HAL1ME,LINE,L1,-2288,177,1,126456680,126459132 +2 - chr5 126480782 126480910 chr5,126480782,126480925,+,L3,LINE,CR1,3664,3808,-291,126477119,126481216 -2 + chr5 126496279 126496490 chr5,126496251,126496490,-,AluJb,SINE,Alu,-16,296,55,126496235,126496544 -1 - chr5 126496912 126496930 chr5,126496912,126496930,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,126496912,126496930 +6 + chr5 126497018 126497037 chr5,126497018,126497037,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,126497018,126497037 +6 + chr5 126497234 126497541 chr5,126497234,126497541,-,AluSx1,SINE,Alu,-1,311,1,126497233,126497541 -6 - chr5 126498087 126498537 chr5,126498087,126498537,-,L1ME1,LINE,L1,-1,6351,5892,126498086,126504428 -6 - chr5 126498537 126498569 chr5,126498537,126498569,+,(TTG)n,Simple_repeat,Simple_repeat,1,32,0,126498537,126498569 +6 + chr5 126498569 126498604 chr5,126498569,126498681,-,L1ME1,LINE,L1,-461,5891,5770,126498108,126504450 -5 - chr5 127073791 127073925 chr5,127073791,127073925,-,L2a,LINE,L2,0,3426,3284,127073791,127077208 -6 - chr5 127074059 127074452 chr5,127074059,127074452,-,L2a,LINE,L2,-337,3082,2649,127073722,127077100 -6 - chr5 127074471 127074659 chr5,127074471,127074659,-,MIRb,SINE,MIR,-6,262,41,127074465,127074699 -6 - chr5 127075537 127075604 chr5,127075537,127075851,+,ORSL-2b,DNA,hAT-Tip100,106,451,-57,127075432,127075908 +5 + chr5 127663624 127663634 chr5,127663198,127663634,+,LTR40b,LTR,ERVL,1,460,-2,127663198,127663636 -4 + chr5 127663634 127663768 chr5,127663634,127663848,-,L3,LINE,CR1,-331,3768,3530,127663303,127667377 +2 - chr5 127663866 127664024 chr5,127663855,127664024,-,L3,LINE,CR1,-818,3281,3113,127663037,127667136 +4 - chr5 127739538 127739611 chr5,127733931,127739952,-,L1PA2,LINE,L1,-6,6149,129,127733925,127740080 -1 - chr5 127739843 127739952 chr5,127733931,127739952,-,L1PA2,LINE,L1,-6,6149,129,127733925,127740080 -1 - chr5 127740167 127740218 chr5,127740167,127740218,-,MIR1_Amn,SINE,MIR,-102,160,109,127740065,127740326 -6 - chr5 127857614 127857804 chr5,127857511,127857993,-,MLT2C2,LTR,ERVL,-8,456,3,127857503,127857995 +1 - chr5 127940440 127940468 chr5,127940440,127940468,+,(TTAT)n,Simple_repeat,Simple_repeat,1,28,0,127940440,127940468 -6 + chr5 127940470 127940748 chr5,127940470,127940748,-,AluY,SINE,Alu,-33,278,1,127940437,127940748 +6 - chr5 127956804 127956921 chr5,127956648,127956938,+,AluSx4,SINE,Alu,1,294,-16,127956648,127956954 -3 + chr5 127965888 127966104 chr5,127965748,127966104,+,L1MD,LINE,L1,2636,2989,-3157,127963113,127969261 -5 + chr5 127966104 127966903 chr5,127966104,127966903,-,LTR1B,LTR,ERV1,0,824,1,127966104,127966903 +5 - chr5 127966903 127966928 chr5,127966903,127966968,+,L1MD,LINE,L1,2990,3053,-3093,127963914,127970061 -2 + chr5 128022181 128022373 chr5,128022181,128022373,+,L1ME4b,LINE,L1,431,642,-250,128021751,128022623 -6 + chr5 128022425 128022550 chr5,128022425,128022550,+,L1ME4b,LINE,L1,720,852,-40,128021706,128022590 -6 + chr5 128022550 128022591 chr5,128022550,128022591,+,(TTAATTT)n,Simple_repeat,Simple_repeat,1,41,0,128022550,128022591 -6 + chr5 128022621 128022819 chr5,128022621,128022819,-,MIRc,SINE,MIR,-43,225,9,128022578,128022827 +6 - chr5 128023253 128023317 chr5,128023253,128023317,+,(AATC)n,Simple_repeat,Simple_repeat,1,66,0,128023253,128023317 -6 + chr5 128023533 128023732 chr5,128023533,128023732,+,MIRb,SINE,MIR,7,215,-53,128023527,128023785 -6 + chr5 128061144 128061162 chr5,128061073,128061162,+,MER34A,LTR,ERV1,40,130,-441,128061034,128061603 -4 + chr5 128082078 128082194 chr5,128082078,128082379,+,AluY,SINE,Alu,1,298,-13,128082078,128082392 -2 + chr5 128742437 128742709 chr5,128742413,128742709,-,AluYj4,SINE,Alu,-10,301,1,128742403,128742709 -2 - chr5 128742709 128742829 chr5,128742709,128743054,+,L1M5,LINE,L1,5267,5647,-526,128737443,128743580 +5 + chr5 129500361 129500572 chr5,129500278,129500572,-,LTR78,LTR,ERV1,-394,910,623,129499884,129501194 +5 - chr5 129780328 129780481 chr5,129780301,129780813,+,MLT2B1,LTR,ERVL,1,520,0,129780301,129780813 -3 + chr5 131261570 131261607 chr5,131261570,131261875,+,AluJb,SINE,Alu,1,299,-13,131261570,131261888 -1 + chr5 131968067 131968175 chr5,131968067,131968175,+,L3,LINE,CR1,2952,3057,-1042,131965116,131969217 +6 + chr5 132006754 132006872 chr5,132006754,132006872,-,L2b,LINE,L2,0,3375,3259,132006754,132010130 -6 - chr5 132012791 132012856 chr5,132012791,132012856,+,(CAGAGAG)n,Simple_repeat,Simple_repeat,1,66,0,132012791,132012856 +6 + chr5 132179234 132179447 chr5,132179048,132179587,-,LTR51,LTR,ERV1,-190,733,2,132178858,132179588 +5 - chr5 132184876 132185004 chr5,132184581,132185004,-,MER101,LTR,ERV1,0,474,3,132184581,132185006 -1 - chr5 132187295 132187373 chr5,132187292,132187496,+,MIRb,SINE,MIR,27,251,-17,132187266,132187513 +3 + chr5 132192261 132192340 chr5,132191583,132192340,+,L1ME3B,LINE,L1,5454,6235,-7,132186130,132192347 +2 + chr5 132311894 132312032 chr5,132311894,132312032,-,MIRb,SINE,MIR,-97,171,21,132311797,132312052 +6 - chr5 132332189 132332310 chr5,132332033,132332324,+,AluSx,SINE,Alu,3,293,-19,132332031,132332343 -5 + chr5 132349433 132349908 chr5,132346225,132349908,-,L1P2,LINE,L1,-2451,3868,174,132343774,132350081 +5 - chr5 132352489 132352631 chr5,132352462,132353100,+,L2a,LINE,L2,2165,2906,-513,132350298,132353613 -1 + chr5 132360080 132360136 chr5,132359835,132360155,-,MER44A,DNA,TcMar-Tigger,-21,318,4,132359814,132360158 +1 - chr5 132364935 132365027 chr5,132364912,132365219,+,AluSq2,SINE,Alu,1,307,-6,132364912,132365225 -3 + chr5 132366281 132366318 chr5,132366156,132366318,-,MIRc,SINE,MIR,-98,170,2,132366058,132366319 +5 - chr5 132366451 132366781 chr5,132366451,132366946,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,132366451,132366946 +2 - chr5 132419488 132419564 chr5,132419488,132419564,+,MIR,SINE,MIR,158,237,-31,132419331,132419595 -6 + chr5 132425476 132425612 chr5,132425476,132425731,+,MIRb,SINE,MIR,3,267,-1,132425474,132425732 -2 + chr5 132468890 132469069 chr5,132468603,132469069,+,L1ME3B,LINE,L1,5595,6124,-118,132463009,132469187 -5 + chr5 132469069 132469487 chr5,132469069,132469487,+,MLT1D,LTR,ERVL-MaLR,117,505,0,132468953,132469487 -6 + chr5 132469748 132469791 chr5,132469748,132469791,+,MER91C,DNA,hAT-Tip100,33,76,-64,132469716,132469855 -6 + chr5 132469913 132470015 chr5,132469913,132470015,+,L1ME3B,LINE,L1,6133,6234,-8,132463781,132470023 -6 + chr5 132470554 132470687 chr5,132470554,132470687,+,L2c,LINE,L2,3259,3387,0,132467296,132470687 -6 + chr5 132471309 132471334 chr5,132471309,132471334,+,(TTAT)n,Simple_repeat,Simple_repeat,1,26,0,132471309,132471334 -6 + chr5 132471601 132471794 chr5,132471601,132471794,+,MIRc,SINE,MIR,2,198,-70,132471600,132471864 -6 + chr5 132472603 132472754 chr5,132472453,132472754,+,AluJb,SINE,Alu,1,297,-15,132472453,132472769 -4 + chr5 132472754 132472902 chr5,132472754,132472902,-,L1ME4a,LINE,L1,-31,6093,5944,132472723,132478845 +6 - chr5 132473012 132473036 chr5,132473012,132473036,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,132473012,132473036 -6 + chr5 132488493 132488589 chr5,132488493,132488589,+,MIRb,SINE,MIR,88,192,-76,132488406,132488665 +6 + chr5 132488647 132488702 chr5,132488647,132488893,+,MIR,SINE,MIR,5,262,0,132488643,132488893 +5 + chr5 132630751 132630891 chr5,132630751,132630937,+,MER107,DNA,hAT-Charlie,3,200,0,132630749,132630937 -2 + chr5 132689582 132689669 chr5,132689570,132689669,-,L4_B_Mam,LINE,RTE-X,-319,4622,4511,132689251,132694179 -2 - chr5 132721355 132721583 chr5,132721324,132721604,+,Helitron3Na_Mam,RC,Helitron,69,367,-119,132721256,132721723 +5 + chr5 132817787 132817990 chr5,132817787,132817990,-,MIR,SINE,MIR,-22,240,16,132817765,132818005 +6 - chr5 133052769 133052789 chr5,133052683,133052789,+,L2b,LINE,L2,3266,3372,-3,133049418,133052792 +1 + chr5 133160438 133160508 chr5,133160345,133160508,-,MLT1H2,LTR,ERVL-MaLR,-325,164,1,133160020,133160508 -1 - chr5 133207836 133207928 chr5,133207646,133207949,-,AluJb,SINE,Alu,-15,297,2,133207631,133207950 -3 - chr5 133208265 133208342 chr5,133207949,133208674,-,L1MEj,LINE,L1,-517,1643,754,133207432,133209427 -3 - chr5 133243817 133243856 chr5,133243817,133243856,+,(CCCTGT)n,Simple_repeat,Simple_repeat,1,41,0,133243817,133243856 +6 + chr5 133246533 133246562 chr5,133246425,133246562,-,MIRb,SINE,MIR,-10,258,96,133246415,133246657 -2 - chr5 133246776 133246836 chr5,133246776,133246836,+,(AAT)n,Simple_repeat,Simple_repeat,1,61,0,133246776,133246836 +6 + chr5 133246837 133247033 chr5,133246837,133247033,-,MIR,SINE,MIR,-18,250,50,133246819,133247082 -5 - chr5 133247985 133248347 chr5,133247985,133248347,-,L3,LINE,CR1,-8,4091,3722,133247977,133252068 -6 - chr5 133248393 133248522 chr5,133248393,133248522,-,L3,LINE,CR1,-551,3548,3392,133247842,133251913 -6 - chr5 133248523 133248708 chr5,133248523,133248708,-,MIR,SINE,MIR,-34,234,35,133248489,133248742 -6 - chr5 133275741 133275769 chr5,133275680,133275769,-,MIR,SINE,MIR,-62,200,103,133275618,133275871 -2 - chr5 133275773 133275977 chr5,133275773,133276174,+,Charlie29a,DNA,hAT-Charlie,295,705,-14,133275479,133276188 +5 + chr5 133388473 133388549 chr5,133388467,133388575,+,LTR69,LTR,ERVL,481,588,0,133387987,133388575 +5 + chr5 133574829 133575087 chr5,133574576,133575087,+,L1ME3A,LINE,L1,5859,6409,0,133568718,133575087 -5 + chr5 133575148 133575270 chr5,133575148,133575270,-,MIRc,SINE,MIR,-125,143,2,133575023,133575271 +6 - chr5 133913677 133913711 chr5,133913520,133913711,-,MIRb,SINE,MIR,-8,260,50,133913512,133913760 -1 - chr5 133913961 133913996 chr5,133913961,133914166,-,MIR,SINE,MIR,-5,257,8,133913956,133914173 -4 - chr5 133914863 133914922 chr5,133914863,133915026,+,L1MC5a,LINE,L1,2366,2537,-240,133912498,133915266 +4 + chr5 133917055 133917171 chr5,133916995,133917171,+,L2b,LINE,L2,3224,3407,-19,133913772,133917190 +2 + chr5 134205614 134205682 chr5,134205376,134205682,-,AluSx1,SINE,Alu,-5,307,1,134205371,134205682 +5 - chr5 134226810 134226851 chr5,134226810,134226851,+,(GCCTCGC)n,Simple_repeat,Simple_repeat,1,43,0,134226810,134226851 +6 + chr5 134399728 134399746 chr5,134399728,134399746,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,134399728,134399746 +6 + chr5 134399754 134399765 chr5,134399754,134400061,+,AluSc,SINE,Alu,1,302,-7,134399754,134400068 +4 + chr5 134401890 134401921 chr5,134401890,134401931,+,(ATGGT)n,Simple_repeat,Simple_repeat,1,44,0,134401890,134401931 +5 + chr5 134429051 134429626 chr5,134428981,134429626,-,LTR48B,LTR,ERV1,0,644,1,134428981,134429626 +5 - chr5 134506799 134506834 chr5,134506799,134506885,-,MamTip2,DNA,hAT-Tip100,-166,139,51,134506633,134506935 -4 - chr5 134508406 134508688 chr5,134508405,134508688,+,AluJo,SINE,Alu,1,279,-33,134508405,134508721 +2 + chr5 134508688 134508934 chr5,134508688,134508934,+,MLT1C,LTR,ERVL-MaLR,204,463,-4,134508485,134508938 +6 + chr5 134508973 134509204 chr5,134508973,134509204,+,L2c,LINE,L2,3130,3387,0,134505844,134509204 +6 + chr5 134522917 134523030 chr5,134522917,134523030,+,MIRb,SINE,MIR,7,123,-145,134522911,134523175 -6 + chr5 135034703 135034744 chr5,135034703,135034744,+,G-rich,Low_complexity,Low_complexity,1,41,0,135034703,135034744 +6 + chr5 135035077 135035137 chr5,135035077,135035137,+,(CCTTGG)n,Simple_repeat,Simple_repeat,1,64,0,135035077,135035137 +6 + chr5 135035577 135035675 chr5,135035577,135035675,-,Tigger19b,DNA,TcMar-Tigger,-163,387,297,135035414,135035971 -6 - chr5 135035874 135035894 chr5,135035874,135035935,+,(CATCCC)n,Simple_repeat,Simple_repeat,1,61,0,135035874,135035935 +5 + chr5 135039040 135039068 chr5,135039040,135039068,+,(CGAA)n,Simple_repeat,Simple_repeat,1,28,0,135039040,135039068 -6 + chr5 135039609 135039707 chr5,135039609,135039707,+,(GCTCCG)n,Simple_repeat,Simple_repeat,1,101,0,135039609,135039707 -1 + chr5 135039772 135039812 chr5,135039772,135039812,+,(GCTCGCCC)n,Simple_repeat,Simple_repeat,1,44,0,135039772,135039812 -6 + chr5 135131011 135131104 chr5,135131011,135131104,+,L2b,LINE,L2,3265,3359,-16,135127747,135131120 -6 + chr5 135133227 135133252 chr5,135133200,135133252,+,L2a,LINE,L2,3279,3332,-94,135129922,135133346 +2 + chr5 135236499 135236525 chr5,135236499,135236525,+,(TC)n,Simple_repeat,Simple_repeat,1,26,0,135236499,135236525 -6 + chr5 135248140 135248175 chr5,135248140,135248175,+,(CCTCT)n,Simple_repeat,Simple_repeat,1,35,0,135248140,135248175 -6 + chr5 135399285 135399360 chr5,135399285,135399360,+,(CGGCCC)n,Simple_repeat,Simple_repeat,1,71,0,135399285,135399360 +6 + chr5 135400095 135400143 chr5,135400095,135400143,+,MIRb,SINE,MIR,145,192,-76,135399951,135400219 +6 + chr5 135400299 135400759 chr5,135400299,135400759,-,L2a,LINE,L2,0,3426,2928,135400299,135403686 -6 - chr5 135401183 135401214 chr5,135401183,135401214,+,(GCT)n,Simple_repeat,Simple_repeat,1,31,0,135401183,135401214 +6 + chr5 135579185 135579277 chr5,135579182,135579277,+,(CA)n,Simple_repeat,Simple_repeat,1,98,0,135579182,135579277 +1 + chr5 135601182 135601203 chr5,135601182,135601340,+,MIRc,SINE,MIR,73,259,-9,135601110,135601349 +4 + chr5 135648584 135648626 chr5,135648516,135648626,+,MIR3,SINE,MIR,22,135,-73,135648495,135648699 -5 + chr5 135649513 135649731 chr5,135649513,135649731,-,L2b,LINE,L2,-181,3194,2966,135649332,135652696 +6 - chr5 135652355 135652461 chr5,135651742,135652784,+,ERVL-E-int,LTR,ERVL,3693,4754,-913,135648050,135653697 -3 + chr5 135899952 135900235 chr5,135899899,135900235,+,L2b,LINE,L2,2990,3375,0,135896910,135900235 +2 + chr5 135900411 135900526 chr5,135900411,135900574,-,MIRc,SINE,MIR,-8,260,97,135900403,135900670 +2 - chr5 135908170 135908438 chr5,135908055,135908589,-,MLT1F2,LTR,ERVL-MaLR,0,560,9,135908055,135908597 +3 - chr5 135917674 135917757 chr5,135917555,135918680,-,L2a,LINE,L2,0,3426,2150,135917555,135920829 +1 - chr5 135918007 135918161 chr5,135917555,135918680,-,L2a,LINE,L2,0,3426,2150,135917555,135920829 +1 - chr5 136134037 136134069 chr5,136134037,136134069,+,G-rich,Low_complexity,Low_complexity,1,32,0,136134037,136134069 -6 + chr5 136193009 136193043 chr5,136193009,136193043,+,(CCG)n,Simple_repeat,Simple_repeat,1,34,0,136193009,136193043 -6 + chr5 136214237 136214421 chr5,136214237,136214421,-,Charlie13b,DNA,hAT-Charlie,-5,507,322,136214232,136214742 -6 - chr5 136303757 136303858 chr5,136301835,136304713,+,HERVH-int,LTR,ERV1,1,2987,-4726,136301835,136309439 +1 + chr5 136315998 136316100 chr5,136315998,136316158,+,MER5A,DNA,hAT-Charlie,12,170,-19,136315987,136316177 +5 + chr5 136376528 136376606 chr5,136376528,136376627,+,AluSx3,SINE,Alu,195,299,-12,136376334,136376639 -2 + chr5 136466677 136466873 chr5,136466574,136466873,-,AluY,SINE,Alu,-11,300,2,136466563,136466874 -1 - chr5 136466873 136466885 chr5,136466873,136467824,-,L1MA10,LINE,L1,-213,6121,5218,136466660,136473041 -4 - chr5 136504600 136504650 chr5,136504500,136504650,-,L1ME3B,LINE,L1,-12,6230,6075,136504488,136510724 -2 - chr5 136504673 136504693 chr5,136504673,136505170,-,L1ME3B,LINE,L1,-205,6037,5519,136504468,136510688 -4 - chr5 136520208 136520271 chr5,136520208,136520271,-,L2c,LINE,L2,-36,3351,3284,136520172,136523554 -6 - chr5 136753815 136753972 chr5,136751351,136754164,-,L1PA6,LINE,L1,-5,6149,3318,136751346,136757481 -3 - chr5 137745651 137746091 chr5,137745576,137746091,-,MER68B,LTR,ERVL,0,564,1,137745576,137746091 +5 - chr5 137761612 137761936 chr5,137761612,137761982,+,MLT1B,LTR,ERVL-MaLR,1,390,0,137761612,137761982 +5 + chr5 137858428 137858481 chr5,137858418,137858761,+,MER44A,DNA,TcMar-Tigger,2,339,0,137858417,137858761 -3 + chr5 137888160 137888191 chr5,137887958,137888191,-,Charlie13a,DNA,hAT-Charlie,-523,991,692,137887435,137888882 +4 - chr5 137888195 137888288 chr5,137888195,137888303,+,FLAM_A,SINE,Alu,21,129,-13,137888175,137888316 -2 + chr5 137889147 137889194 chr5,137889005,137889194,+,MIRb,SINE,MIR,2,211,-57,137889004,137889251 -4 + chr5 138036193 138036231 chr5,138036106,138036231,+,MER91B,DNA,hAT-Tip100,25,213,-3311,138036082,138039542 +2 + chr5 138036321 138036620 chr5,138036321,138036620,-,LTR78,LTR,ERV1,-768,536,195,138035553,138036814 -6 - chr5 138036793 138036849 chr5,138036793,138036849,+,MER20,DNA,hAT-Charlie,1,71,-148,138036793,138036997 +6 + chr5 138036897 138037005 chr5,138036897,138037005,+,MER20,DNA,hAT-Charlie,58,174,-45,138036840,138037050 +6 + chr5 138039203 138039230 chr5,138039203,138039230,+,(AAAT)n,Simple_repeat,Simple_repeat,1,27,0,138039203,138039230 +6 + chr5 138039482 138039578 chr5,138039482,138039735,-,AluJo,SINE,Alu,-58,254,1,138039424,138039735 -4 - chr5 138039714 138039735 chr5,138039482,138039735,-,AluJo,SINE,Alu,-58,254,1,138039424,138039735 -2 - chr5 138744434 138744481 chr5,138744185,138744481,-,L2a,LINE,L2,-245,3181,2844,138743940,138747324 +5 - chr5 138744485 138744716 chr5,138744485,138744716,-,L1PA15,LINE,L1,0,6165,5936,138744485,138750651 +6 - chr5 138753261 138753309 chr5,138753261,138753416,+,G-rich,Low_complexity,Low_complexity,1,159,0,138753261,138753416 -1 + chr5 139012647 139012691 chr5,139012461,139012691,-,L1MC5,LINE,L1,-179,9125,8913,139012282,139021603 -1 - chr5 139012691 139012786 chr5,139012691,139012970,+,AluJb,SINE,Alu,7,299,-13,139012685,139012983 +4 + chr5 139013988 139014084 chr5,139013988,139014084,-,L2c,LINE,L2,-44,3343,3245,139013944,139017328 -6 - chr5 139014113 139014224 chr5,139014113,139014383,+,AluSp,SINE,Alu,29,299,-14,139014085,139014397 +5 + chr5 139016872 139017147 chr5,139016866,139017147,-,AluJb,SINE,Alu,-32,280,3,139016834,139017149 -2 - chr5 139021911 139021982 chr5,139021911,139021982,-,MER3,DNA,hAT-Charlie,-131,78,1,139021780,139021982 -6 - chr5 139022430 139022555 chr5,139022430,139022555,+,L2a,LINE,L2,3301,3426,0,139019130,139022555 +6 + chr5 139032894 139032931 chr5,139031033,139032976,-,L1MDa,LINE,L1,-903,5641,3636,139030130,139036611 -3 - chr5 139034397 139034442 chr5,139033294,139034726,-,L1MDa,LINE,L1,-2909,3635,2130,139030385,139036855 -3 - chr5 139364677 139364704 chr5,139364659,139364781,+,OldhAT1,DNA,hAT-Ac,763,878,-1970,139363897,139366751 -5 + chr5 139644653 139644739 chr5,139644653,139644739,+,MIRb,SINE,MIR,182,268,0,139644472,139644739 -6 + chr5 139644938 139645002 chr5,139644938,139645098,+,MER91A,DNA,hAT-Tip100,4,196,0,139644935,139645098 -1 + chr5 139684663 139684703 chr5,139684663,139684703,+,L3b,LINE,CR1,5002,5041,-191,139679662,139684894 +6 + chr5 139721903 139721967 chr5,139721691,139722010,+,THE1A,LTR,ERVL-MaLR,3,322,-33,139721689,139722043 +3 + chr5 139744924 139744986 chr5,139744924,139744986,-,MIR3,SINE,MIR,-67,141,76,139744857,139745061 -6 - chr5 139772528 139772931 chr5,139772485,139772931,+,L2a,LINE,L2,2918,3398,-28,139769568,139772959 -5 + chr5 139772918 139772954 chr5,139772918,139772987,-,L2b,LINE,L2,-67,3308,3241,139772851,139776227 +2 - chr5 139848290 139848311 chr5,139848227,139848311,+,(GGC)n,Simple_repeat,Simple_repeat,1,87,0,139848227,139848311 +1 + chr5 140072857 140072880 chr5,140072747,140072880,-,L1ME4c,LINE,L1,-482,5642,5543,140072265,140078422 +5 - chr5 140072880 140073077 chr5,140072880,140073106,+,AluJb,SINE,Alu,84,308,-4,140072797,140073110 -2 + chr5 140102989 140103312 chr5,140102989,140103312,-,L1MA4,LINE,L1,0,6300,5945,140102989,140109256 +6 - chr5 140103349 140103782 chr5,140103349,140103782,-,L1MA4,LINE,L1,-468,5832,5389,140102881,140109170 +6 - chr5 140106517 140106675 chr5,140106517,140106675,+,MIRc,SINE,MIR,14,180,-88,140106504,140106763 -6 + chr5 140161953 140162255 chr5,140161927,140162255,-,AluJb,SINE,Alu,0,312,1,140161927,140162255 -1 - chr5 140162255 140162759 chr5,140162255,140162759,+,L2a,LINE,L2,2836,3423,-3,140159420,140162762 +6 + chr5 140162770 140163229 chr5,140162770,140163229,+,LTR16E2,LTR,ERVL,12,547,-21,140162759,140163250 +6 + chr5 140163320 140163496 chr5,140163320,140163496,+,L1ME2,LINE,L1,4860,5053,-1093,140158461,140164589 +6 + chr5 140163496 140163808 chr5,140163496,140163808,+,AluSq4,SINE,Alu,2,310,-1,140163495,140163809 +6 + chr5 140163808 140164331 chr5,140163808,140164331,+,L1ME2,LINE,L1,5054,5642,-522,140158755,140164853 +6 + chr5 140164331 140164786 chr5,140164331,140164786,+,MSTB2,LTR,ERVL-MaLR,4,457,0,140164328,140164786 +6 + chr5 140164786 140165088 chr5,140164786,140165088,+,L1ME2,LINE,L1,5643,5950,-214,140159144,140165302 +6 + chr5 140165100 140165703 chr5,140165100,140165703,-,L2a,LINE,L2,-95,3292,2616,140165005,140168318 -6 - chr5 140165863 140165905 chr5,140165863,140165905,+,G-rich,Low_complexity,Low_complexity,1,46,0,140165863,140165905 +6 + chr5 140165993 140166117 chr5,140165993,140166117,-,MER5A,DNA,hAT-Charlie,-13,176,54,140165980,140166170 -6 - chr5 140166491 140166698 chr5,140166491,140166698,-,MIRb,SINE,MIR,-39,229,38,140166452,140166735 -6 - chr5 140167026 140167051 chr5,140167026,140167051,+,(GCA)n,Simple_repeat,Simple_repeat,1,25,0,140167026,140167051 +6 + chr5 140200163 140200481 chr5,140199786,140200481,-,L1PA7,LINE,L1,-664,5490,4793,140199122,140205273 -1 - chr5 140200483 140200557 chr5,140200483,140200557,-,L1MB8,LINE,L1,-120,6058,5984,140200363,140206540 -6 - chr5 140200557 140200858 chr5,140200557,140200858,-,AluY,SINE,Alu,-9,302,1,140200548,140200858 -6 - chr5 140200858 140201162 chr5,140200858,140201162,-,L1MB8,LINE,L1,-195,5983,5685,140200663,140206846 -6 - chr5 140201242 140201393 chr5,140201242,140201393,-,MLT1F-int,LTR,ERVL-MaLR,-1,1488,1334,140201241,140202726 -6 - chr5 140201757 140201896 chr5,140201757,140201896,+,HAL1,LINE,L1,811,954,-1553,140200947,140203449 +6 + chr5 140201932 140202235 chr5,140201932,140202235,-,AluSx,SINE,Alu,-7,305,1,140201925,140202235 -6 - chr5 140202445 140202502 chr5,140202445,140202502,-,MLT1G1,LTR,ERVL-MaLR,0,595,529,140202445,140203030 -6 - chr5 140203150 140203187 chr5,140203150,140203197,+,L1PA15,LINE,L1,6118,6162,-3,140197033,140203200 +5 + chr5 140370891 140370959 chr5,140370845,140370959,+,MIR,SINE,MIR,92,209,-59,140370754,140371018 -5 + chr5 140801343 140801378 chr5,140801343,140801378,+,(GCTGGA)n,Simple_repeat,Simple_repeat,1,38,0,140801343,140801378 -6 + chr5 140875621 140875653 chr5,140875621,140875653,+,(GGAGCT)n,Simple_repeat,Simple_repeat,1,35,0,140875621,140875653 -6 + chr5 140882417 140882449 chr5,140882417,140882449,+,(GGAGCT)n,Simple_repeat,Simple_repeat,1,35,0,140882417,140882449 -6 + chr5 140966426 140966457 chr5,140966426,140966457,+,(CCCCCT)n,Simple_repeat,Simple_repeat,1,31,0,140966426,140966457 -6 + chr5 141046260 141046566 chr5,141046238,141046622,-,MER92A,LTR,ERV1,-5,407,28,141046233,141046649 +5 - chr5 141062411 141062533 chr5,141062254,141062546,+,AluSz6,SINE,Alu,1,288,-24,141062254,141062570 -1 + chr5 141080419 141080515 chr5,141080071,141080645,-,L2c,LINE,L2,-219,3168,2559,141079852,141083203 -3 - chr5 141118680 141118979 chr5,141118677,141118979,-,AluJr,SINE,Alu,-11,301,1,141118666,141118979 -1 - chr5 141119733 141119970 chr5,141119733,141119970,+,MIR,SINE,MIR,20,259,-3,141119714,141119973 +6 + chr5 141168231 141168548 chr5,141168099,141168548,+,HAL1,LINE,L1,30,479,-2028,141168070,141170576 +1 + chr5 141168652 141168893 chr5,141168652,141168973,+,MLT1I,LTR,ERVL-MaLR,1,335,-76,141168652,141169049 +5 + chr5 141191676 141191818 chr5,141191676,141191818,-,L2c,LINE,L2,-58,3329,3182,141191618,141194999 +6 - chr5 141327043 141327200 chr5,141327043,141327200,+,FAM,SINE,Alu,16,175,-10,141327028,141327210 +6 + chr5 141328846 141328969 chr5,141328846,141328969,-,AluSz,SINE,Alu,-178,134,8,141328668,141328976 -6 - chr5 141468564 141468584 chr5,141468564,141468584,+,(AAT)n,Simple_repeat,Simple_repeat,1,19,0,141468564,141468584 +6 + chr5 141471315 141471350 chr5,141471046,141471350,-,AluSx1,SINE,Alu,-10,302,1,141471036,141471350 -2 - chr5 141471350 141471405 chr5,141471350,141471405,+,MER45A,DNA,hAT-Tip100,125,177,-1,141471226,141471406 +6 + chr5 141471411 141471528 chr5,141471411,141471754,-,L2,LINE,L2,-574,2845,2476,141470837,141474229 -5 - chr5 141626338 141626469 chr5,141626338,141626469,+,L1ME3G,LINE,L1,5981,6160,-2,141620358,141626471 +6 + chr5 141826119 141826294 chr5,141826119,141826294,+,MIRb,SINE,MIR,21,207,-61,141826099,141826355 -6 + chr5 141952604 141952777 chr5,141952604,141952777,+,MIRc,SINE,MIR,23,200,-68,141952582,141952845 +6 + chr5 141953140 141953345 chr5,141953140,141953345,+,MIRb,SINE,MIR,5,196,-72,141953136,141953417 +6 + chr5 141981602 141981684 chr5,141981581,141981879,+,AluJb,SINE,Alu,1,310,-2,141981581,141981881 -3 + chr5 142165808 142166119 chr5,142165808,142166119,+,AluY,SINE,Alu,1,309,-2,142165808,142166121 +6 + chr5 142167006 142167209 chr5,142167006,142167209,-,MIR,SINE,MIR,-1,261,26,142167005,142167234 -6 - chr5 142167313 142167525 chr5,142167313,142167525,-,MER113B,DNA,hAT-Charlie,-5,297,87,142167308,142167611 -6 - chr5 142167525 142167708 chr5,142167525,142167708,+,AluSx4,SINE,Alu,120,299,-11,142167406,142167719 +6 + chr5 142345416 142345458 chr5,142345388,142345458,+,HAL1,LINE,L1,1637,1731,-776,142343752,142346234 +2 + chr5 142353323 142353349 chr5,142353323,142353349,+,(CCA)n,Simple_repeat,Simple_repeat,1,26,0,142353323,142353349 +6 + chr5 142367829 142367886 chr5,142367777,142367938,-,MIRc,SINE,MIR,-82,186,20,142367695,142367957 -3 - chr5 142404339 142404353 chr5,142404339,142404369,+,(GGCA)n,Simple_repeat,Simple_repeat,1,30,0,142404339,142404369 +4 + chr5 142529995 142530054 chr5,142529944,142530054,-,L1MC5,LINE,L1,-2859,132,1,142527085,142530054 -2 - chr5 142581802 142581914 chr5,142581691,142582162,+,LTR16E1,LTR,ERVL,29,536,-2,142581663,142582164 +1 + chr5 142626872 142627088 chr5,142626872,142627088,+,MIRc,SINE,MIR,35,267,-1,142626838,142627089 +6 + chr5 142671792 142671972 chr5,142671752,142671972,-,MIRb,SINE,MIR,-1,261,14,142671751,142671985 -2 - chr5 142703782 142705421 chr5,142703613,142705431,-,L1MEg,LINE,L1,-3463,2683,669,142700150,142706099 -5 - chr5 142757827 142757934 chr5,142757477,142758516,-,L2a,LINE,L2,-228,3198,2109,142757249,142760624 -3 - chr5 142759337 142759586 chr5,142759337,142759586,-,MIRb,SINE,MIR,-8,254,17,142759329,142759602 -6 - chr5 142760031 142760262 chr5,142760031,142760262,-,MIRb,SINE,MIR,-1,267,13,142760030,142760274 -6 - chr5 142760327 142760445 chr5,142760327,142760445,+,MIR3,SINE,MIR,86,208,0,142760242,142760445 +6 + chr5 142760857 142760998 chr5,142760857,142761159,+,MER58B,DNA,hAT-Charlie,5,337,-4,142760853,142761163 +5 + chr5 142859604 142859742 chr5,142859348,142860297,-,MER45B,DNA,hAT-Tip100,-44,996,1,142859304,142860297 +5 - chr5 142860002 142860161 chr5,142859348,142860297,-,MER45B,DNA,hAT-Tip100,-44,996,1,142859304,142860297 +5 - chr5 142867988 142868089 chr5,142867988,142868264,-,L2b,LINE,L2,-51,3324,3076,142867937,142871339 +2 - chr5 143192500 143192607 chr5,143192407,143192607,+,MER58D,DNA,hAT-Charlie,1,381,-5,143192407,143192612 +1 + chr5 143193912 143193963 chr5,143193550,143193963,+,MER44C,DNA,TcMar-Tigger,291,731,-2,143193260,143193965 +2 + chr5 143406959 143406988 chr5,143406921,143406988,-,MIRb,SINE,MIR,-6,262,196,143406915,143407183 -1 - chr5 143407131 143407222 chr5,143407131,143407222,+,L2b,LINE,L2,3265,3356,-19,143403867,143407241 +6 + chr5 143407400 143407420 chr5,143407400,143407618,+,L2c,LINE,L2,3167,3387,0,143404234,143407618 +5 + chr5 143530939 143531238 chr5,143530939,143531238,+,AluY,SINE,Alu,1,300,-11,143530939,143531249 -6 + chr5 143672615 143672672 chr5,143672615,143672672,+,(AGAC)n,Simple_repeat,Simple_repeat,1,57,0,143672615,143672672 +6 + chr5 143828627 143828772 chr5,143828627,143828847,+,MIRc,SINE,MIR,17,244,-24,143828611,143828871 +5 + chr5 145222654 145222831 chr5,145222654,145223115,-,L2c,LINE,L2,-88,3299,2842,145222566,145225956 +2 - chr5 145337932 145337993 chr5,145337912,145337993,+,L1MA9,LINE,L1,6227,6308,-4,145331686,145337997 -5 + chr5 145429868 145429925 chr5,145429714,145430138,+,MLT1H,LTR,ERVL-MaLR,88,549,0,145429627,145430138 +1 + chr5 145436998 145437094 chr5,145436787,145437094,+,L2c,LINE,L2,3050,3367,-8,145433738,145437102 +2 + chr5 145450871 145450957 chr5,145450871,145450957,-,MIRc,SINE,MIR,-17,251,164,145450854,145451120 -6 - chr5 146099406 146099430 chr5,146099383,146099682,+,AluSg,SINE,Alu,5,304,-6,146099379,146099688 +1 + chr5 146360810 146360888 chr5,146360810,146361076,-,MER102b,DNA,hAT-Charlie,-65,276,1,146360745,146361076 +2 - chr5 146361679 146361776 chr5,146361520,146361825,+,AluSq2,SINE,Alu,1,304,-9,146361520,146361834 -3 + chr5 146375398 146375496 chr5,146375398,146375719,+,L3,LINE,CR1,3114,3463,-636,146372285,146376355 -1 + chr5 146375591 146375719 chr5,146375398,146375719,+,L3,LINE,CR1,3114,3463,-636,146372285,146376355 -1 + chr5 146375944 146375987 chr5,146375944,146376079,+,L3,LINE,CR1,3632,3764,-335,146372313,146376414 -2 + chr5 146376121 146376219 chr5,146376121,146376432,+,AluJo,SINE,Alu,3,312,0,146376119,146376432 -1 + chr5 146376716 146376919 chr5,146376716,146376919,+,L3,LINE,CR1,3800,4011,-88,146372917,146377007 -6 + chr5 146407195 146407359 chr5,146407035,146407458,+,MER113,DNA,hAT-Charlie,68,515,-6,146406968,146407464 +5 + chr5 146563226 146563291 chr5,146563052,146563291,-,MIR,SINE,MIR,-3,259,2,146563049,146563292 -1 - chr5 146616936 146617004 chr5,146615534,146617503,+,L1MA2,LINE,L1,4254,6298,-6,146611281,146617509 +5 + chr5 147180247 147180474 chr5,147180247,147180474,-,MIRb,SINE,MIR,-16,252,35,147180231,147180508 +6 - chr5 147180502 147180623 chr5,147180502,147180623,-,MIRb,SINE,MIR,-47,221,100,147180455,147180722 +6 - chr5 147201977 147201996 chr5,147201606,147201996,+,ERVL-E-int,LTR,ERVL,4576,4969,-698,147197031,147202694 -4 + chr5 147886086 147886411 chr5,147885669,147886411,+,L1MD1,LINE,L1,5482,6234,-8,147880188,147886419 -5 + chr5 147887534 147887704 chr5,147887534,147887742,-,L2b,LINE,L2,-8,3418,3189,147887526,147890930 -5 - chr5 148268450 148268482 chr5,148268450,148268482,+,(CA)n,Simple_repeat,Simple_repeat,1,32,0,148268450,148268482 -6 + chr5 148290252 148290585 chr5,148290168,148290585,-,MSTA,LTR,ERVL-MaLR,0,428,1,148290168,148290585 +4 - chr5 148290585 148290666 chr5,148290585,148290666,+,MLT1K,LTR,ERVL-MaLR,515,595,0,148290071,148290666 -6 + chr5 148378702 148378845 chr5,148378664,148379046,-,MSTA,LTR,ERVL-MaLR,0,428,3,148378664,148379048 +3 - chr5 148430159 148430321 chr5,148430158,148430321,-,AluSx1,SINE,Alu,-16,296,134,148430142,148430454 +5 - chr5 148430321 148430440 chr5,148430321,148430630,-,AluSx1,SINE,Alu,-3,309,1,148430318,148430630 +2 - chr5 148430576 148430630 chr5,148430321,148430630,-,AluSx1,SINE,Alu,-3,309,1,148430318,148430630 +4 - chr5 148644687 148644931 chr5,148644469,148644931,-,LTR16C,LTR,ERVL,0,489,1,148644469,148644931 +5 - chr5 148644931 148645178 chr5,148644931,148645178,+,MER113,DNA,hAT-Charlie,270,516,-5,148644662,148645183 -6 + chr5 148645212 148645520 chr5,148645212,148645520,-,MER58B,DNA,hAT-Charlie,-15,326,1,148645197,148645520 +6 - chr5 148645530 148645686 chr5,148645530,148645686,+,MIRb,SINE,MIR,50,205,-63,148645481,148645749 -6 + chr5 148646050 148646137 chr5,148646050,148646137,-,MER5A,DNA,hAT-Charlie,0,189,97,148646050,148646233 +6 - chr5 148970597 148970653 chr5,148970597,148970653,+,A-rich,Low_complexity,Low_complexity,1,59,0,148970597,148970653 +5 + chr5 149064067 149064222 chr5,149064027,149064222,+,L3,LINE,CR1,2865,3085,-1014,149061163,149065236 +5 + chr5 149064573 149064784 chr5,149064573,149064784,-,MIRb,SINE,MIR,-14,254,34,149064559,149064817 -6 - chr5 149065476 149065871 chr5,149065476,149065871,-,L2,LINE,L2,-355,3064,2630,149065121,149068500 -6 - chr5 149065871 149066344 chr5,149065871,149066344,-,MLT2C2,LTR,ERVL,0,464,1,149065871,149066344 -6 - chr5 149066344 149066985 chr5,149066344,149066995,-,L2,LINE,L2,-790,2629,1917,149065554,149068911 -5 - chr5 149071347 149071431 chr5,149071294,149071431,-,L2a,LINE,L2,-736,2683,2511,149070558,149073941 -2 - chr5 149071473 149071527 chr5,149071473,149071600,+,FLAM_C,SINE,Alu,5,132,-11,149071469,149071611 +5 + chr5 149089294 149089354 chr5,149089243,149089354,+,MIRc,SINE,MIR,129,241,-27,149089115,149089381 +2 + chr5 149089356 149089452 chr5,149089356,149089833,+,L1MB8,LINE,L1,5142,5596,-582,149084215,149090415 +5 + chr5 149106867 149106949 chr5,149106867,149106949,-,MIRb,SINE,MIR,-132,136,48,149106735,149106996 -6 - chr5 149106924 149107137 chr5,149106924,149107137,+,MIR,SINE,MIR,46,262,0,149106879,149107137 +6 + chr5 149164078 149164254 chr5,149164078,149164270,-,CR1_Mam,LINE,CR1,-1949,255,65,149162129,149164334 +2 - chr5 149177010 149177056 chr5,149177010,149177056,+,MIR3,SINE,MIR,112,157,-51,149176899,149177107 -6 + chr5 149216523 149216631 chr5,149216167,149216631,-,MER113,DNA,hAT-Charlie,-8,513,1,149216159,149216631 +5 - chr5 149216648 149216710 chr5,149216648,149216710,+,MIR3,SINE,MIR,118,181,-27,149216531,149216737 -6 + chr5 149217838 149218106 chr5,149217838,149218106,-,L2c,LINE,L2,0,3387,3093,149217838,149221198 +6 - chr5 149218106 149218452 chr5,149218106,149218452,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,149218106,149218452 +6 - chr5 149218452 149218607 chr5,149218452,149218607,-,L2c,LINE,L2,-295,3092,2924,149218157,149221530 +6 - chr5 149218865 149218910 chr5,149218865,149218910,+,(GGCCCT)n,Simple_repeat,Simple_repeat,1,45,0,149218865,149218910 -6 + chr5 149218964 149219118 chr5,149218964,149219118,+,L3,LINE,CR1,3792,3967,-132,149215173,149219250 -6 + chr5 149219118 149219305 chr5,149219118,149219305,-,MER20,DNA,hAT-Charlie,-2,217,1,149219116,149219305 +6 - chr5 149219305 149219408 chr5,149219305,149219408,+,L3,LINE,CR1,3968,4075,-24,149215338,149219432 -6 + chr5 149219425 149219604 chr5,149219425,149219604,-,MIR3,SINE,MIR,-18,190,8,149219407,149219611 +6 - chr5 149219947 149220051 chr5,149219947,149220051,+,MIRb,SINE,MIR,39,150,-118,149219909,149220169 -6 + chr5 149220118 149220233 chr5,149220118,149220233,-,L2a,LINE,L2,-2,3424,3309,149220116,149223541 +6 - chr5 149220675 149220810 chr5,149220675,149220810,+,MIR3,SINE,MIR,7,146,-62,149220669,149220872 -6 + chr5 149220825 149220939 chr5,149220825,149221262,-,L2b,LINE,L2,-1,3374,2963,149220824,149224224 +2 - chr5 149348116 149348144 chr5,149347937,149348144,+,MIR,SINE,MIR,44,256,-6,149347894,149348150 -5 + chr5 149357556 149357642 chr5,149357556,149357717,-,MIRc,SINE,MIR,-27,241,46,149357529,149357762 +1 - chr5 149372277 149372353 chr5,149372277,149372546,+,L5,LINE,RTE-X,1873,2138,-127,149370405,149372673 +4 + chr5 149374709 149374813 chr5,149374694,149374813,-,MIRc,SINE,MIR,-70,198,83,149374624,149374895 -2 - chr5 149374928 149375046 chr5,149374928,149375046,-,AluJb,SINE,Alu,-18,294,176,149374910,149375221 -6 - chr5 149407160 149407292 chr5,149407160,149407292,+,MIR3,SINE,MIR,65,208,0,149407096,149407292 +1 + chr5 149407612 149407777 chr5,149407612,149407777,+,MIR3,SINE,MIR,11,167,-41,149407602,149407818 +6 + chr5 149408347 149408539 chr5,149408347,149408539,+,MIRb,SINE,MIR,4,212,-56,149408344,149408595 +6 + chr5 149408850 149408914 chr5,149408850,149408914,+,MER5A,DNA,hAT-Charlie,116,183,-6,149408735,149408920 +6 + chr5 149408955 149409039 chr5,149408955,149409039,-,MIR3,SINE,MIR,-77,131,44,149408878,149409082 -6 - chr5 149409080 149409278 chr5,149409080,149409278,-,MIR,SINE,MIR,0,262,62,149409080,149409339 -6 - chr5 149409401 149409639 chr5,149409401,149409639,-,MIRb,SINE,MIR,-15,253,1,149409386,149409639 -6 - chr5 149409886 149410183 chr5,149409886,149410183,-,AluJb,SINE,Alu,-13,299,1,149409873,149410183 -6 - chr5 149410420 149410641 chr5,149410420,149410641,-,L1M5,LINE,L1,-537,5706,5474,149409883,149416114 -6 - chr5 149411138 149411195 chr5,149411138,149411195,-,MIR3,SINE,MIR,-34,174,118,149411104,149411312 -6 - chr5 149411301 149411554 chr5,149411301,149411554,+,MIR,SINE,MIR,7,248,-14,149411295,149411568 +6 + chr5 149411567 149411688 chr5,149411567,149411688,+,AluJo,SINE,Alu,1,118,-194,149411567,149411882 +6 + chr5 149411827 149412030 chr5,149411827,149412030,-,MIRb,SINE,MIR,-2,228,16,149411825,149412045 -6 - chr5 149412487 149412789 chr5,149412487,149412789,+,AluSx3,SINE,Alu,1,302,-9,149412487,149412798 +5 + chr5 149413190 149413404 chr5,149413190,149413404,-,L2c,LINE,L2,-298,3128,2910,149412892,149416313 -6 - chr5 149413891 149413949 chr5,149413891,149413949,-,Tigger5b,DNA,TcMar-Tigger,-20,452,394,149413871,149414342 -6 - chr5 149413955 149414097 chr5,149413955,149414273,+,AluSz6,SINE,Alu,1,300,-12,149413955,149414285 +5 + chr5 149415708 149415834 chr5,149415708,149415834,+,MIRc,SINE,MIR,14,137,-93,149415695,149415927 +6 + chr5 149415850 149415917 chr5,149415850,149416140,+,AluSx3,SINE,Alu,1,293,-18,149415850,149416158 +4 + chr5 149420813 149420951 chr5,149420813,149420951,+,MIRc,SINE,MIR,22,176,-92,149420792,149421043 +5 + chr5 149421606 149421661 chr5,149421606,149421661,+,(CCCAC)n,Simple_repeat,Simple_repeat,1,55,0,149421606,149421661 +5 + chr5 149422070 149422208 chr5,149422070,149422208,+,MIRb,SINE,MIR,87,252,-16,149421984,149422224 +6 + chr5 149422275 149422407 chr5,149422275,149422407,-,MIR3,SINE,MIR,-91,177,41,149422184,149422447 -6 - chr5 149423272 149423349 chr5,149423272,149423349,-,L2b,LINE,L2,-38,3337,3264,149423234,149426612 -6 - chr5 149423486 149423650 chr5,149423486,149423650,+,MIRb,SINE,MIR,27,191,-77,149423460,149423727 +6 + chr5 149423624 149423767 chr5,149423624,149423767,-,MIR3,SINE,MIR,-82,186,42,149423542,149423808 -6 - chr5 149424666 149424688 chr5,149424666,149424688,+,(CT)n,Simple_repeat,Simple_repeat,1,23,0,149424666,149424688 +6 + chr5 149425771 149425831 chr5,149425592,149425831,-,MER113,DNA,hAT-Charlie,-153,368,105,149425439,149425935 +5 - chr5 149425592 149425831 chr5,149425592,149425831,-,MER113,DNA,hAT-Charlie,-153,368,105,149425439,149425935 -5 - chr5 149426260 149426404 chr5,149426260,149426404,-,AluJb,SINE,Alu,-171,141,1,149426089,149426404 -6 - chr5 149426600 149426899 chr5,149426600,149426899,-,AluSx1,SINE,Alu,-14,298,1,149426586,149426899 -6 - chr5 149426901 149427031 chr5,149426901,149427031,-,FLAM_C,SINE,Alu,-10,133,2,149426891,149427032 -6 - chr5 149427984 149428005 chr5,149427709,149428005,+,AluSx,SINE,Alu,1,296,-16,149427709,149428021 -4 + chr5 149427709 149428005 chr5,149427709,149428005,+,AluSx,SINE,Alu,1,296,-16,149427709,149428021 +6 + chr5 149428174 149428289 chr5,149428174,149428376,-,L2,LINE,L2,-482,2937,2723,149427692,149431098 +1 - chr5 149428174 149428376 chr5,149428174,149428376,-,L2,LINE,L2,-482,2937,2723,149427692,149431098 -1 - chr5 149428460 149428678 chr5,149428460,149428678,+,L1MB5,LINE,L1,5893,6130,-44,149422568,149428722 +5 + chr5 149430286 149430385 chr5,149430274,149430385,-,MIRb,SINE,MIR,-119,149,40,149430155,149430424 -1 - chr5 149430947 149431025 chr5,149430947,149431025,-,MIRc,SINE,MIR,-157,111,37,149430790,149431061 -6 - chr5 149431121 149431251 chr5,149431121,149431251,+,MamRep564,Unknown,Unknown,123,262,-95,149430999,149431346 +6 + chr5 149431327 149431363 chr5,149431327,149431363,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,149431327,149431363 +6 + chr5 149431483 149431593 chr5,149431483,149431593,-,MIRc,SINE,MIR,-56,152,46,149431427,149431638 -6 - chr5 149431629 149431809 chr5,149431629,149431809,+,AluJr,SINE,Alu,115,289,-23,149431515,149431832 +6 + chr5 149431916 149432211 chr5,149431916,149432211,+,AluSx3,SINE,Alu,1,294,-17,149431916,149432228 +6 + chr5 149432456 149432694 chr5,149432456,149432694,-,MIRb,SINE,MIR,-1,261,6,149432455,149432699 -6 - chr5 149495209 149495242 chr5,149495209,149495242,+,A-rich,Low_complexity,Low_complexity,1,33,0,149495209,149495242 -6 + chr5 149495744 149495779 chr5,149495744,149495779,+,(A)n,Simple_repeat,Simple_repeat,1,35,0,149495744,149495779 -6 + chr5 149496864 149496918 chr5,149496864,149496918,+,A-rich,Low_complexity,Low_complexity,1,58,0,149496864,149496918 -6 + chr5 149497822 149498130 chr5,149497822,149498130,-,AluSg,SINE,Alu,-1,309,2,149497821,149498131 +6 - chr5 149498576 149498618 chr5,149498576,149498618,+,(AGGATTAAAC)n,Simple_repeat,Simple_repeat,1,43,0,149498576,149498618 -6 + chr5 149502358 149502674 chr5,149502358,149502674,-,AluJo,SINE,Alu,-29,283,1,149502329,149502674 +6 - chr5 149502770 149503064 chr5,149502770,149503064,-,AluSz,SINE,Alu,-14,298,2,149502756,149503065 +6 - chr5 149503165 149503223 chr5,149503165,149503223,-,MER5A,DNA,hAT-Charlie,0,189,121,149503165,149503343 +6 - chr5 150475692 150475759 chr5,150475692,150475785,+,MIRc,SINE,MIR,120,210,-58,150475573,150475843 -2 + chr5 150485901 150485929 chr5,150485873,150485929,+,(CCCCGCC)n,Simple_repeat,Simple_repeat,1,56,0,150485873,150485929 -4 + chr5 150614558 150614631 chr5,150614486,150614631,+,MIR3,SINE,MIR,5,154,-76,150614482,150614707 -4 + chr5 150614980 150615093 chr5,150614890,150615093,+,MIR,SINE,MIR,13,268,0,150614878,150615093 -4 + chr5 150670658 150670721 chr5,150670650,150670721,-,MIR1_Amn,SINE,MIR,-81,149,79,150670569,150670799 +5 - chr5 150672265 150672303 chr5,150672265,150672303,+,G-rich,Low_complexity,Low_complexity,1,40,0,150672265,150672303 -6 + chr5 151158121 151158261 chr5,151158121,151158261,-,MIRb,SINE,MIR,-54,214,63,151158067,151158323 +6 - chr5 151158428 151158462 chr5,151158390,151158671,-,L2a,LINE,L2,-310,3116,2819,151158080,151161489 +1 - chr5 151509453 151509881 chr5,151509386,151509881,+,MER1A,DNA,hAT-Charlie,5,529,0,151509382,151509881 +1 + chr5 151510262 151510426 chr5,151510262,151510426,-,L2b,LINE,L2,-3,3372,3207,151510259,151513632 -6 - chr5 151510420 151510673 chr5,151510420,151510673,-,MIR,SINE,MIR,-1,261,7,151510419,151510679 -6 - chr5 151510708 151511222 chr5,151510708,151511222,-,L2b,LINE,L2,-212,3163,2611,151510496,151513832 -6 - chr5 151511341 151511713 chr5,151511341,151511713,+,L1ME5,LINE,L1,5504,5894,-300,151505838,151512013 +6 + chr5 151511791 151511924 chr5,151511791,151511924,+,L1ME5,LINE,L1,6012,6178,-16,151505780,151511940 +6 + chr5 151512739 151512769 chr5,151512739,151512871,-,MIRc,SINE,MIR,-18,250,114,151512721,151512984 -5 - chr5 151652275 151652365 chr5,151652260,151652365,+,MER20B,DNA,hAT-Charlie,96,199,-584,151652165,151652949 +1 + chr5 151654060 151654468 chr5,151654060,151654468,+,L1ME3B,LINE,L1,5191,5613,-630,151648870,151655098 +6 + chr5 151654474 151654884 chr5,151654474,151654884,+,LTR33A_,LTR,ERVL,1,436,-95,151654474,151654979 +6 + chr5 151654891 151655436 chr5,151654891,151655436,+,L1MD2,LINE,L1,5799,6345,-14,151649093,151655450 +6 + chr5 151679220 151679336 chr5,151679156,151679418,-,MIRc,SINE,MIR,-3,265,16,151679153,151679433 -3 - chr5 151686870 151686894 chr5,151686870,151686894,+,(GGCA)n,Simple_repeat,Simple_repeat,1,25,0,151686870,151686894 +6 + chr5 151686989 151687053 chr5,151686989,151687053,+,(CTC)n,Simple_repeat,Simple_repeat,1,65,0,151686989,151687053 +6 + chr5 151687169 151687326 chr5,151687169,151687326,-,MIR3,SINE,MIR,-8,200,27,151687161,151687352 -6 - chr5 151687652 151687777 chr5,151687652,151687777,-,MIR,SINE,MIR,-76,186,56,151687576,151687832 -6 - chr5 151724935 151725089 chr5,151724935,151725089,+,L1ME4b,LINE,L1,428,580,-312,151724508,151725401 -6 + chr5 151725247 151725356 chr5,151725247,151725357,-,MER81,DNA,hAT-Blackjack,0,114,1,151725247,151725357 +1 - chr5 151761465 151761521 chr5,151761465,151761562,+,Charlie8,DNA,hAT-Charlie,1,99,-2329,151761465,151763891 +4 + chr5 151949571 151949663 chr5,151949385,151949741,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,151949385,151949741 +1 + chr5 151951638 151951680 chr5,151951598,151951728,-,MIR3,SINE,MIR,-92,176,33,151951506,151951760 -3 - chr5 151958898 151958954 chr5,151958688,151959037,+,THE1B,LTR,ERVL-MaLR,17,364,0,151958672,151959037 +1 + chr5 152217077 152217165 chr5,152217077,152217165,-,MamRTE1,LINE,RTE-BovB,-1140,2672,2584,152215937,152219748 -6 - chr5 152231263 152231299 chr5,152231224,152231569,+,MER44A,DNA,TcMar-Tigger,1,339,0,152231224,152231569 +3 + chr5 152267369 152267432 chr5,152267369,152267432,+,MER5A,DNA,hAT-Charlie,4,64,-125,152267366,152267557 +6 + chr5 152267400 152267444 chr5,152267400,152267444,-,MER5A,DNA,hAT-Charlie,-22,167,124,152267378,152267567 -6 - chr5 152267444 152267556 chr5,152267444,152267556,+,MER5B,DNA,hAT-Charlie,66,176,-2,152267379,152267558 +6 + chr5 152267611 152267647 chr5,152267611,152267647,+,(CATC)n,Simple_repeat,Simple_repeat,1,36,0,152267611,152267647 +6 + chr5 152267996 152268142 chr5,152267996,152268142,+,L2b,LINE,L2,3216,3359,-16,152264781,152268158 +6 + chr5 152268392 152268527 chr5,152268392,152268527,+,MER113,DNA,hAT-Charlie,77,220,-301,152268316,152268828 +6 + chr5 152268533 152268583 chr5,152268533,152268583,-,L1MA7,LINE,L1,-1,6290,6241,152268532,152274823 -6 - chr5 152268658 152268992 chr5,152268658,152268992,-,MER1B,DNA,hAT-Charlie,0,339,1,152268658,152268992 -6 - chr5 152268992 152269075 chr5,152268992,152269075,+,Tigger3d,DNA,TcMar-Tigger,239,321,0,152268754,152269075 +6 + chr5 152269631 152269672 chr5,152269631,152269672,+,L2b,LINE,L2,3374,3414,-12,152266258,152269684 +6 + chr5 152269793 152270029 chr5,152269793,152270029,-,MER113,DNA,hAT-Charlie,-4,517,256,152269789,152270284 -6 - chr5 152618965 152619686 chr5,152618876,152619686,+,L1ME2,LINE,L1,4433,5304,-842,152614444,152620528 -5 + chr5 152619733 152620476 chr5,152619733,152620476,+,L1ME2,LINE,L1,5366,6158,-6,152614368,152620482 -6 + chr5 152623231 152623352 chr5,152623108,152623369,+,AluSx1,SINE,Alu,36,296,-16,152623073,152623385 -3 + chr5 152820265 152820300 chr5,152820265,152820746,+,L1MD1,LINE,L1,3676,4161,-2376,152816590,152823122 -2 + chr5 152966276 152966334 chr5,152966276,152966424,+,LTR90B,LTR,LTR,604,753,-43,152965673,152966467 -2 + chr5 152967093 152967106 chr5,152967044,152967234,-,MIR3,SINE,MIR,-7,201,10,152967037,152967243 +3 - chr5 152972189 152972233 chr5,152972189,152972544,-,THE1A,LTR,ERVL-MaLR,0,355,1,152972189,152972544 +1 - chr5 152972266 152972349 chr5,152972189,152972544,-,THE1A,LTR,ERVL-MaLR,0,355,1,152972189,152972544 +1 - chr5 153887428 153887452 chr5,153887288,153887452,-,MIRc,SINE,MIR,-46,222,65,153887242,153887516 +5 - chr5 153898266 153898345 chr5,153898266,153898345,-,MLT1O,LTR,ERVL-MaLR,-396,146,68,153897870,153898412 +6 - chr5 153901459 153901904 chr5,153901355,153901904,+,MLT1F,LTR,ERVL-MaLR,15,576,-3,153901341,153901907 +1 + chr5 153902000 153902049 chr5,153902000,153902049,+,MIR3,SINE,MIR,111,160,-48,153901890,153902097 +6 + chr5 153902096 153902353 chr5,153902096,153902353,+,Charlie19a,DNA,hAT-Charlie,75,332,-54,153902022,153902407 +6 + chr5 153902422 153902643 chr5,153902422,153902643,-,MIR,SINE,MIR,-2,260,49,153902420,153902691 -6 - chr5 153902853 153903223 chr5,153902853,153903332,+,L1ME3Cz,LINE,L1,254,763,-234,153902600,153903566 +5 + chr5 154329866 154329931 chr5,154329866,154329931,-,MIR,SINE,MIR,-52,210,142,154329814,154330072 +6 - chr5 154392171 154392227 chr5,154392120,154392227,+,L2c,LINE,L2,3014,3128,-247,154389107,154392474 -5 + chr5 154392277 154392367 chr5,154392277,154392367,+,L2c,LINE,L2,3286,3374,-13,154388992,154392380 -6 + chr5 154392495 154392635 chr5,154392495,154392635,+,MIRc,SINE,MIR,91,262,-6,154392405,154392641 -6 + chr5 154392794 154393014 chr5,154392794,154393044,+,L1M5,LINE,L1,5540,5820,-303,154387255,154393347 -2 + chr5 154436031 154436269 chr5,154436031,154436269,-,MIRb,SINE,MIR,0,268,21,154436031,154436289 +6 - chr5 154436274 154436336 chr5,154436274,154436504,+,Charlie18a,DNA,hAT-Charlie,1,238,-104,154436274,154436608 -2 + chr5 154442997 154443078 chr5,154442970,154443078,-,MIRc,SINE,MIR,-144,124,6,154442826,154443083 +5 - chr5 154443107 154443199 chr5,154443107,154443199,+,L1ME4c,LINE,L1,561,655,-175,154442547,154443374 -6 + chr5 154443205 154443480 chr5,154443205,154443515,+,AluSp,SINE,Alu,1,311,-2,154443205,154443517 -2 + chr5 154485265 154485293 chr5,154485265,154485293,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,154485265,154485293 -5 + chr5 156704058 156704275 chr5,156703975,156704574,-,MLT1K,LTR,ERVL-MaLR,-2,593,4,156703973,156704577 +5 - chr5 156739764 156739812 chr5,156739764,156739909,+,MIRc,SINE,MIR,38,181,-87,156739727,156739996 -1 + chr5 157199242 157199270 chr5,157199093,157199270,-,MIRb,SINE,MIR,-77,185,4,157199016,157199273 +5 - chr5 157199608 157199775 chr5,157199608,157199805,+,MIRb,SINE,MIR,8,257,-11,157199601,157199816 -2 + chr5 157260122 157260718 chr5,157259322,157261248,-,Tigger2,DNA,TcMar-Tigger,0,2718,779,157259322,157262026 +5 - chr5 157363805 157363957 chr5,157363805,157363957,+,MIR3,SINE,MIR,2,155,-53,157363804,157364010 -6 + chr5 157364185 157364217 chr5,157364185,157364217,+,G-rich,Low_complexity,Low_complexity,1,32,0,157364185,157364217 -6 + chr5 157364526 157364601 chr5,157364463,157364601,-,MIR3,SINE,MIR,-48,160,27,157364415,157364627 +4 - chr5 157365054 157365214 chr5,157365054,157365214,+,L1ME3G,LINE,L1,735,897,-27,157364320,157365241 -6 + chr5 157375750 157375843 chr5,157375750,157375843,+,MIRb,SINE,MIR,118,211,-57,157375633,157375900 -6 + chr5 157380014 157380148 chr5,157379777,157380522,-,LTR8,LTR,ERV1,0,691,3,157379777,157380524 +5 - chr5 157384213 157384226 chr5,157384180,157384226,-,L2c,LINE,L2,-53,3334,3289,157384127,157387514 +4 - chr5 157384657 157384950 chr5,157384657,157384963,+,AluSx1,SINE,Alu,1,306,-6,157384657,157384969 -1 + chr5 157565964 157566125 chr5,157565826,157566125,+,AluSz,SINE,Alu,1,299,-13,157565826,157566138 +1 + chr5 157566125 157566233 chr5,157566125,157566233,+,L1M5,LINE,L1,5734,5821,-303,157560392,157566536 +6 + chr5 157566696 157566730 chr5,157566696,157566970,-,AluJb,SINE,Alu,-23,289,2,157566673,157566971 -4 - chr5 157568021 157568273 chr5,157567980,157568273,-,AluSx,SINE,Alu,-17,295,1,157567963,157568273 -2 - chr5 157568297 157568422 chr5,157568297,157568422,-,Tigger19b,DNA,TcMar-Tigger,-61,489,356,157568236,157568777 -6 - chr5 157568603 157568707 chr5,157568603,157568707,+,L2b,LINE,L2,3263,3368,-7,157565341,157568714 +6 + chr5 157568893 157568991 chr5,157568893,157568991,-,CR1_Mam,LINE,CR1,-302,1902,1805,157568591,157570795 -6 - chr5 157682985 157683042 chr5,157682924,157683042,+,MIRc,SINE,MIR,2,122,-146,157682923,157683188 -5 + chr5 158173601 158173641 chr5,158173499,158173641,-,MER117,DNA,hAT-Charlie,-7,190,55,158173492,158173695 +5 - chr5 158175396 158175414 chr5,158175380,158175414,+,(TG)n,Simple_repeat,Simple_repeat,1,35,0,158175380,158175414 +1 + chr5 158199485 158199884 chr5,158199485,158199884,+,Tigger2a,DNA,TcMar-Tigger,2,434,0,158199484,158199884 +6 + chr5 158199884 158200016 chr5,158199884,158200068,-,MamTip1,DNA,hAT-Tip100,-68,199,7,158199816,158200074 -5 - chr5 158225352 158225506 chr5,158225110,158225583,+,MLT1D,LTR,ERVL-MaLR,1,505,0,158225110,158225583 -5 + chr5 158226287 158226309 chr5,158226229,158226309,+,MIRb,SINE,MIR,101,190,-78,158226129,158226387 -4 + chr5 158232139 158232244 chr5,158232100,158232468,-,THE1B,LTR,ERVL-MaLR,0,364,1,158232100,158232468 +3 - chr5 158234095 158234187 chr5,158233931,158234187,+,MIRb,SINE,MIR,2,259,-9,158233930,158234196 -4 + chr5 158234208 158234290 chr5,158234208,158234290,-,MIRc,SINE,MIR,-110,158,81,158234098,158234370 +6 - chr5 158256137 158256165 chr5,158256092,158256448,-,MLT1L,LTR,ERVL-MaLR,-227,383,3,158255865,158256450 -1 - chr5 158258067 158258138 chr5,158258067,158258138,-,L3,LINE,CR1,-1,4098,4017,158258066,158262154 -6 - chr5 158258294 158258436 chr5,158258294,158260453,+,L1PA3,LINE,L1,3978,6141,-14,158254317,158260467 +5 + chr5 158275711 158275799 chr5,158275587,158275799,+,MLT1H,LTR,ERVL-MaLR,107,306,-243,158275481,158276042 +1 + chr5 158278658 158278813 chr5,158278464,158278928,+,MLT1L,LTR,ERVL-MaLR,148,601,-9,158278317,158278937 +5 + chr5 158320683 158320707 chr5,158320679,158320707,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,158320679,158320707 -5 + chr5 158320819 158320951 chr5,158320819,158320951,+,UCON66,Unknown,Unknown,400,539,-26,158320420,158320977 -6 + chr5 158321770 158321846 chr5,158321770,158321846,+,L2c,LINE,L2,3258,3347,-40,158318513,158321886 -6 + chr5 158322140 158322379 chr5,158322140,158322379,-,MIRb,SINE,MIR,-8,260,11,158322132,158322389 +6 - chr5 158323022 158323635 chr5,158323022,158323656,-,L2a,LINE,L2,0,3426,2741,158323022,158326396 +2 - chr5 158341221 158341390 chr5,158341043,158341390,-,MLT1E1A,LTR,ERVL-MaLR,0,680,330,158341043,158341719 +4 - chr5 158362402 158362541 chr5,158362323,158362717,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,158362323,158362717 +3 - chr5 158409646 158409732 chr5,158408862,158409732,+,L2a,LINE,L2,2037,2922,-497,158406826,158410229 -4 + chr5 158409733 158409773 chr5,158409733,158409956,+,L2a,LINE,L2,3090,3327,-99,158406644,158410055 -1 + chr5 158424602 158424690 chr5,158424602,158424771,-,MER5A,DNA,hAT-Charlie,-6,183,7,158424596,158424777 -4 - chr5 158452279 158452603 chr5,158452279,158452603,-,UCON78,DNA,DNA,0,443,129,158452279,158452731 -6 - chr5 158984708 158984789 chr5,158984674,158984982,-,AluSc8,SINE,Alu,0,311,1,158984674,158984982 -5 - chr5 158986446 158986456 chr5,158986446,158986687,-,MER102b,DNA,hAT-Charlie,-92,249,2,158986354,158986688 -4 - chr5 158986880 158987033 chr5,158986880,158987033,-,MIR,SINE,MIR,-92,170,16,158986788,158987048 -6 - chr5 158987121 158987199 chr5,158987121,158987261,+,MIRb,SINE,MIR,39,164,-98,158987083,158987359 +5 + chr5 159106502 159106530 chr5,159106502,159106530,+,(A)n,Simple_repeat,Simple_repeat,1,28,0,159106502,159106530 +6 + chr5 159107137 159107438 chr5,159107137,159107438,+,L2c,LINE,L2,3002,3359,-28,159104136,159107466 +5 + chr5 159107412 159107651 chr5,159107412,159107651,-,MIR,SINE,MIR,0,262,13,159107412,159107663 -6 - chr5 159107848 159108004 chr5,159107848,159108004,+,MIRb,SINE,MIR,72,261,-7,159107777,159108011 +6 + chr5 159108324 159108617 chr5,159108324,159108635,+,AluSq2,SINE,Alu,1,311,-2,159108324,159108637 +5 + chr5 159115112 159115366 chr5,159115073,159115366,-,AluSq2,SINE,Alu,-5,308,1,159115068,159115366 -5 - chr5 159115520 159115673 chr5,159115520,159115673,-,MIRb,SINE,MIR,-69,199,36,159115451,159115708 -6 - chr5 159116010 159116254 chr5,159116010,159116254,-,MIR,SINE,MIR,0,262,8,159116010,159116261 -6 - chr5 159116442 159116738 chr5,159116442,159116738,-,AluSg,SINE,Alu,-13,297,1,159116429,159116738 -6 - chr5 159229263 159229317 chr5,159229263,159229668,+,MamRep1151,LTR?,LTR?,58,461,-248,159229206,159229916 +4 + chr5 159244660 159244716 chr5,159244201,159244716,-,L1MB7,LINE,L1,-601,5583,5047,159243600,159249762 -2 - chr5 159245092 159245123 chr5,159245092,159245123,+,(TC)n,Simple_repeat,Simple_repeat,1,31,0,159245092,159245123 +6 + chr5 159325534 159325595 chr5,159325462,159325595,-,Plat_L3,LINE,CR1,-192,3394,3260,159325270,159328854 -2 - chr5 159325597 159325654 chr5,159325597,159325798,+,MIRb,SINE,MIR,30,230,0,159325568,159325798 +4 + chr5 159332002 159332040 chr5,159332002,159332069,+,L1ME4b,LINE,L1,605,672,-220,159331398,159332289 +4 + chr5 159347516 159347595 chr5,159347506,159347595,+,MIRc,SINE,MIR,112,201,-67,159347395,159347662 +2 + chr5 159354004 159354121 chr5,159353968,159354259,-,AluJr,SINE,Alu,-2,310,21,159353966,159354279 -3 - chr5 159448589 159448860 chr5,159448589,159448860,-,L2b,LINE,L2,-3,3372,3075,159448586,159451934 +6 - chr5 159448945 159449321 chr5,159448945,159449321,-,MLT1B,LTR,ERVL-MaLR,-10,380,3,159448935,159449323 +6 - chr5 159449334 159449430 chr5,159449334,159449430,-,L2b,LINE,L2,-496,2923,2827,159448838,159452256 +6 - chr5 159453389 159453421 chr5,159453250,159453421,-,MLT1O,LTR,ERVL-MaLR,-259,283,105,159452991,159453525 +4 - chr5 159458731 159458801 chr5,159458731,159458802,-,L2b,LINE,L2,-8,3367,3302,159458723,159462103 +2 - chr5 159464255 159464318 chr5,159464255,159464318,-,MER117,DNA,hAT-Charlie,-105,92,29,159464150,159464346 +6 - chr5 159466130 159466276 chr5,159466130,159466476,-,MLT1L,LTR,ERVL-MaLR,-223,387,1,159465907,159466476 +1 - chr5 159748234 159748375 chr5,159748234,159748811,-,HAL1M8,LINE,L1,-2384,607,3,159745850,159748813 +2 - chr5 159750905 159750920 chr5,159750645,159750920,+,Charlie15b,DNA,hAT-Charlie,779,1054,-7,159749867,159750927 -4 + chr5 159751741 159751766 chr5,159751660,159751766,+,MLT1H,LTR,ERVL-MaLR,411,517,-32,159751250,159751798 -4 + chr5 159776775 159776870 chr5,159776775,159776870,+,L2a,LINE,L2,3311,3406,-20,159773465,159776890 -6 + chr5 159778217 159778330 chr5,159778217,159778330,-,L2c,LINE,L2,-2,3385,3277,159778215,159781606 +6 - chr5 159778339 159778451 chr5,159778339,159778451,+,L2b,LINE,L2,3258,3375,0,159775082,159778451 -6 + chr5 159778509 159778643 chr5,159778509,159778643,-,L3b,LINE,CR1,-229,5003,4862,159778280,159783504 +6 - chr5 159868035 159868169 chr5,159868035,159868169,+,MIRb,SINE,MIR,67,200,-68,159867969,159868237 -6 + chr5 159868942 159868980 chr5,159868942,159868980,+,MIRc,SINE,MIR,90,127,-141,159868853,159869121 -6 + chr5 159869195 159869310 chr5,159869195,159869310,+,L3b,LINE,CR1,4673,4756,-476,159864523,159869786 -6 + chr5 159869362 159869608 chr5,159869362,159869608,+,L3b,LINE,CR1,3786,4057,-42,159865577,159869650 -6 + chr5 159869669 159869898 chr5,159869669,159869898,+,MIR,SINE,MIR,29,260,-2,159869641,159869900 -6 + chr5 159869945 159870208 chr5,159869945,159870208,-,L2a,LINE,L2,-40,3386,3125,159869905,159873332 +6 - chr5 159870440 159870486 chr5,159870440,159870486,+,(CATC)n,Simple_repeat,Simple_repeat,1,46,0,159870440,159870486 -6 + chr5 159870721 159871019 chr5,159870721,159871019,-,MamRep137,DNA,TcMar-Tigger,-4,506,206,159870717,159871224 +6 - chr5 159871325 159871384 chr5,159871325,159871754,-,MLT1C,LTR,ERVL-MaLR,0,467,6,159871325,159871759 +1 - chr5 160196591 160196872 chr5,160196568,160196872,-,AluY,SINE,Alu,-8,303,1,160196560,160196872 +5 - chr5 160196872 160196892 chr5,160196872,160196892,+,(TCCAAT)n,Simple_repeat,Simple_repeat,6,25,0,160196867,160196892 -6 + chr5 160197086 160197150 chr5,160197086,160197150,+,MER91C,DNA,hAT-Tip100,77,140,0,160197010,160197150 -6 + chr5 160197359 160197512 chr5,160197359,160197512,+,MIR,SINE,MIR,19,225,-43,160197341,160197555 -6 + chr5 160197581 160197748 chr5,160197581,160197748,-,MER20,DNA,hAT-Charlie,-14,205,7,160197567,160197754 +6 - chr5 160197921 160197982 chr5,160197921,160197982,+,(GT)n,Simple_repeat,Simple_repeat,1,61,0,160197921,160197982 -6 + chr5 160197982 160198009 chr5,160197982,160198009,+,GA-rich,Low_complexity,Low_complexity,1,55,-70,160197982,160198079 -6 + chr5 160198009 160198073 chr5,160198009,160198073,+,G-rich,Low_complexity,Low_complexity,1,64,0,160198009,160198073 -6 + chr5 160198073 160198105 chr5,160198073,160198105,+,GA-rich,Low_complexity,Low_complexity,56,125,0,160198018,160198105 -6 + chr5 160198298 160198985 chr5,160198298,160198985,+,L2a,LINE,L2,2573,3426,0,160195726,160198985 -6 + chr5 160199161 160199171 chr5,160199161,160199233,+,X7A_LINE,LINE,CR1,41,116,-151,160199121,160199384 -2 + chr5 160204722 160204790 chr5,160204479,160204790,-,AluSq2,SINE,Alu,-11,302,1,160204468,160204790 +4 - chr5 160485684 160485737 chr5,160485684,160485737,-,MIR,SINE,MIR,-11,251,199,160485673,160485935 -6 - chr5 160485738 160486417 chr5,160485738,160486417,+,LTR84a,LTR,ERVL,1,730,-27,160485738,160486444 +6 + chr5 160486473 160486555 chr5,160486473,160486555,-,MIRb,SINE,MIR,-16,252,172,160486457,160486726 -6 - chr5 160487194 160487418 chr5,160487194,160487418,+,L1ME4a,LINE,L1,2240,2408,-13,160484955,160487431 +6 + chr5 160639164 160639183 chr5,160639164,160639248,+,L2c,LINE,L2,3071,3157,-230,160636094,160639478 +5 + chr5 160687000 160687067 chr5,160686982,160687364,+,L2a,LINE,L2,3018,3426,0,160683965,160687364 +3 + chr5 160692631 160692889 chr5,160692383,160692951,+,LTR26C,LTR,ERV1,1,539,0,160692383,160692951 +5 + chr5 160931778 160932008 chr5,160931742,160932008,-,MLT1I,LTR,ERVL-MaLR,-26,385,112,160931716,160932119 +5 - chr5 160932109 160932474 chr5,160932109,160932474,-,LTR18A,LTR,ERVL,0,357,2,160932109,160932475 +6 - chr5 160932476 160933807 chr5,160932476,160938462,-,HERVL18-int,LTR,ERVL,0,6047,12,160932476,160938473 +2 - chr5 160935990 160936109 chr5,160932476,160938462,-,HERVL18-int,LTR,ERVL,0,6047,12,160932476,160938473 +3 - chr5 160938478 160938626 chr5,160938478,160938828,-,LTR18A,LTR,ERVL,0,357,1,160938478,160938828 +1 - chr5 162424537 162424712 chr5,162424537,162424712,-,L3,LINE,CR1,-17,4082,3894,162424520,162428605 +6 - chr5 162427306 162427345 chr5,162427115,162427485,+,L2c,LINE,L2,3021,3371,-4,162424095,162427489 -1 + chr5 162591610 162591685 chr5,162591380,162591774,+,MSTD,LTR,ERVL-MaLR,1,396,0,162591380,162591774 -3 + chr5 162623335 162623398 chr5,162621659,162623398,+,LTR12C,LTR,ERV1,1,1579,0,162621659,162623398 -4 + chr5 163012265 163012288 chr5,163012012,163012310,+,AluSz,SINE,Alu,1,297,-15,163012012,163012325 -5 + chr5 163038063 163038473 chr5,163038015,163038713,-,LTR62,LTR,ERVL,0,709,1,163038015,163038713 +5 - chr5 163425803 163425920 chr5,163425644,163425954,+,AluSz,SINE,Alu,1,309,-3,163425644,163425957 -3 + chr5 163428941 163429033 chr5,163428919,163429208,+,AluJo,SINE,Alu,2,290,-22,163428918,163429230 -3 + chr5 163489251 163489325 chr5,163488968,163489325,-,MER1B,DNA,hAT-Charlie,-6,333,1,163488962,163489325 +4 - chr5 163489329 163489383 chr5,163489329,163490115,-,L1MB8,LINE,L1,-6074,793,11,163483255,163490125 +2 - chr5 163493443 163494058 chr5,163492466,163494873,-,ERVL-B4-int,LTR,ERVL,-1920,3794,1279,163490546,163496151 +1 - chr5 164194145 164194191 chr5,164194015,164194191,-,MIRb,SINE,MIR,-84,184,1,164193931,164194191 +4 - chr5 164194205 164194356 chr5,164194205,164194489,-,MLT1I,LTR,ERVL-MaLR,-29,382,82,164194176,164194570 +2 - chr5 164230335 164230448 chr5,164230335,164230629,+,AluJb,SINE,Alu,3,310,-2,164230333,164230631 -2 + chr5 164231798 164231868 chr5,164231798,164231914,+,L2c,LINE,L2,3277,3387,0,164228522,164231914 -2 + chr5 164448444 164448593 chr5,164448444,164448593,-,MIRc,SINE,MIR,-110,158,14,164448334,164448606 +6 - chr5 164467329 164467496 chr5,164467329,164467595,+,L2a,LINE,L2,3091,3426,0,164464239,164467595 +1 + chr5 164467347 164467402 chr5,164467329,164467595,+,L2a,LINE,L2,3091,3426,0,164464239,164467595 -1 + chr5 164467961 164467974 chr5,164467758,164467974,+,MIRb,SINE,MIR,10,245,-23,164467749,164467997 +1 + chr5 164468167 164468357 chr5,164468167,164468357,-,MER58A,DNA,hAT-Charlie,-3,221,30,164468164,164468386 -6 - chr5 164470325 164470367 chr5,164470325,164470367,+,A-rich,Low_complexity,Low_complexity,1,42,0,164470325,164470367 +6 + chr5 164492796 164493112 chr5,164490323,164493625,-,L1PA4,LINE,L1,-1,6154,2838,164490322,164496462 -5 - chr5 164523947 164524004 chr5,164523768,164524158,+,MER1A,DNA,hAT-Charlie,118,510,-19,164523651,164524177 +3 + chr5 164549419 164549580 chr5,164547005,164549916,-,L1PA5,LINE,L1,-1,6153,3170,164547004,164553085 -3 - chr5 164553327 164553400 chr5,164553294,164553603,-,AluSg,SINE,Alu,-1,309,1,164553293,164553603 -3 - chr5 164554751 164554925 chr5,164554711,164555013,-,AluSq2,SINE,Alu,0,313,13,164554711,164555025 -5 - chr5 164601780 164601917 chr5,164601780,164601917,-,MIR,SINE,MIR,-98,164,12,164601682,164601928 -6 - chr5 164602134 164602434 chr5,164602134,164602444,+,AluSx1,SINE,Alu,1,312,0,164602134,164602444 +5 + chr5 164765361 164765405 chr5,164765334,164765638,-,AluSx,SINE,Alu,-7,305,2,164765327,164765639 -5 - chr5 164920135 164920195 chr5,164920135,164920215,-,AluJo,SINE,Alu,-232,80,1,164919903,164920215 -3 - chr5 164973488 164973560 chr5,164969249,164973617,-,LTR25-int,LTR,ERV1,-137,7051,609,164969112,164974225 -1 - chr5 165130187 165130233 chr5,165130187,165131421,+,L1ME2,LINE,L1,4801,6137,-27,165125387,165131448 +5 + chr5 165171590 165171619 chr5,165171590,165171619,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,165171590,165171619 +5 + chr5 165220577 165222020 chr5,165219483,165222035,-,L1MEf,LINE,L1,-3334,3210,501,165216149,165222535 +5 - chr5 165240462 165240760 chr5,165240382,165240999,-,MLT2F,LTR,ERVL,0,663,1,165240382,165240999 +1 - chr5 165241629 165241752 chr5,165241000,165242560,-,ERVL-B4-int,LTR,ERVL,-2,5712,4078,165240998,165246637 +1 - chr5 165777977 165778045 chr5,165777935,165778045,-,Tigger19b,DNA,TcMar-Tigger,-133,417,326,165777802,165778370 -2 - chr5 165778254 165778290 chr5,165778254,165778290,+,(TATACA)n,Simple_repeat,Simple_repeat,1,36,0,165778254,165778290 +6 + chr5 166128498 166128650 chr5,166128455,166130444,-,HERV9-int,LTR,ERV1,-416,8020,5360,166128039,166135803 -1 - chr5 166134013 166134110 chr5,166130807,166134994,-,HERVFH21-int,LTR,ERV1,-1172,5357,1198,166129635,166136191 -3 - chr5 166907925 166907959 chr5,166907748,166907959,-,L1ME4a,LINE,L1,-7,6117,5876,166907741,166913834 +4 - chr5 166925963 166926370 chr5,166925926,166927511,-,LTR12C,LTR,ERV1,0,1579,2,166925926,166927512 +1 - chr5 167116318 167116514 chr5,167116085,167116514,-,LTR16B,LTR,ERVL,-3,460,1,167116082,167116514 +5 - chr5 167116624 167116668 chr5,167116624,167116668,+,MIRb,SINE,MIR,117,160,-108,167116508,167116776 -6 + chr5 167119471 167119585 chr5,167119395,167119759,-,MLT1A1,LTR,ERVL-MaLR,-4,404,1,167119391,167119759 +1 - chr5 167165119 167165365 chr5,167165119,167165460,-,MLT1J2,LTR,ERVL-MaLR,0,448,120,167165119,167165579 +2 - chr5 167287802 167287819 chr5,167287802,167287948,-,MER135,DNA,DNA,-8,220,61,167287794,167288008 +2 - chr5 167294251 167294273 chr5,167294055,167294479,-,L2b,LINE,L2,-772,2647,2205,167293283,167296683 +1 - chr5 167303123 167303268 chr5,167300254,167303268,-,HERVH-int,LTR,ERV1,-4726,2987,1,167295528,167303268 +4 - chr5 167303270 167303372 chr5,167303270,167303678,-,LTR7,LTR,ERV1,-2,448,1,167303268,167303678 +1 - chr5 167653254 167653419 chr5,167653254,167653419,-,FRAM,SINE,Alu,-11,165,1,167653243,167653419 +6 - chr5 167653632 167653892 chr5,167653632,167653892,+,MLT1K,LTR,ERVL-MaLR,69,344,-251,167653564,167654143 -6 + chr5 167660180 167660481 chr5,167660180,167660492,+,AluYm1,SINE,Alu,1,309,-2,167660180,167660494 -1 + chr5 167721363 167721407 chr5,167721329,167721823,-,MLT1D,LTR,ERVL-MaLR,-8,497,4,167721321,167721826 -1 - chr5 167938578 167938631 chr5,167938578,167938644,+,L2c,LINE,L2,3325,3386,-1,167935254,167938645 -2 + chr5 167965187 167965284 chr5,167964776,167965284,-,L2,LINE,L2,-452,2967,2432,167964324,167967715 +5 - chr5 167965435 167965578 chr5,167965435,167965599,+,FRAM,SINE,Alu,1,164,-12,167965435,167965611 -2 + chr5 168087327 168087440 chr5,168087327,168087634,+,AluSx3,SINE,Alu,1,307,-4,168087327,168087638 -2 + chr5 168128856 168128941 chr5,168128665,168128941,+,MER58B,DNA,hAT-Charlie,1,291,-50,168128665,168128991 +1 + chr5 168186111 168186205 chr5,168186014,168186205,-,MIR,SINE,MIR,-68,194,6,168185946,168186210 +4 - chr5 168186669 168186704 chr5,168186669,168186704,+,(AATA)n,Simple_repeat,Simple_repeat,1,35,0,168186669,168186704 -6 + chr5 168667660 168667761 chr5,168667660,168667779,+,MIRc,SINE,MIR,120,237,-31,168667541,168667810 +5 + chr5 168707094 168707318 chr5,168707094,168707318,+,MIRb,SINE,MIR,19,254,-14,168707076,168707332 +6 + chr5 168710055 168710069 chr5,168709787,168710069,+,L1ME4c,LINE,L1,133,437,-393,168709655,168710462 +2 + chr5 168712680 168712693 chr5,168712558,168712693,+,MIRb,SINE,MIR,17,153,-115,168712542,168712808 +2 + chr5 168712737 168712771 chr5,168712737,168712965,+,MIR,SINE,MIR,14,260,-2,168712724,168712967 +4 + chr5 168718069 168718185 chr5,168718057,168718271,+,L3,LINE,CR1,3815,4036,-63,168714243,168718334 +3 + chr5 168719939 168720209 chr5,168719911,168720209,-,AluJb,SINE,Alu,-10,302,7,168719901,168720215 -2 - chr5 168995489 168995550 chr5,168995309,168995550,-,Tigger19a,DNA,TcMar-Tigger,-30,293,79,168995279,168995628 -2 - chr5 169012792 169013036 chr5,169012792,169013036,+,MIRb,SINE,MIR,4,254,-14,169012789,169013050 -6 + chr5 169024006 169024154 chr5,169024006,169024154,-,MIRb,SINE,MIR,-60,202,47,169023946,169024200 -5 - chr5 169026438 169026631 chr5,169026438,169026804,+,L1ME4a,LINE,L1,5771,6124,0,169020668,169026804 +5 + chr5 169030386 169030456 chr5,169030371,169030519,-,MIRb,SINE,MIR,-115,153,2,169030256,169030520 -1 - chr5 170191847 170191990 chr5,170191847,170191990,-,L1ME4a,LINE,L1,-299,5825,5697,170191548,170197686 +6 - chr5 170198443 170198616 chr5,170198443,170198616,+,MIR,SINE,MIR,37,241,-21,170198407,170198637 -6 + chr5 170308701 170308797 chr5,170308697,170308797,-,L2a,LINE,L2,0,3426,3315,170308697,170312111 +5 - chr5 170308801 170308841 chr5,170308801,170308841,+,(ATG)n,Simple_repeat,Simple_repeat,1,41,0,170308801,170308841 -6 + chr5 170308980 170309171 chr5,170308980,170309171,-,MER3,DNA,hAT-Charlie,-6,203,1,170308974,170309171 +6 - chr5 170309175 170309415 chr5,170309175,170309415,+,MIR,SINE,MIR,24,267,-1,170309152,170309416 -6 + chr5 170309413 170309913 chr5,170309413,170309913,-,L2a,LINE,L2,-148,3278,2707,170309265,170312619 +6 - chr5 170309953 170310276 chr5,170309953,170310276,+,L2a,LINE,L2,3034,3426,0,170306920,170310276 -6 + chr5 170310320 170310448 chr5,170310320,170310448,-,MIR3,SINE,MIR,-76,132,6,170310244,170310453 +6 - chr5 170312539 170312656 chr5,170312416,170312656,+,L2c,LINE,L2,3091,3388,-38,170309326,170312694 -4 + chr5 170332848 170332937 chr5,170332281,170333130,-,MER4D1,LTR,ERV1,0,900,1,170332281,170333130 -3 - chr5 170420386 170420410 chr5,170420143,170420410,+,Tigger2a,DNA,TcMar-Tigger,1,256,-178,170420143,170420588 +2 + chr5 170420410 170420556 chr5,170420410,170420556,+,AluSq2,SINE,Alu,161,306,-7,170420250,170420563 +6 + chr5 170420556 170420615 chr5,170420556,170420739,+,Tigger2b_Pri,DNA,TcMar-Tigger,884,1068,0,170419673,170420739 +4 + chr5 170422255 170422344 chr5,170422255,170422344,+,MIR3,SINE,MIR,46,135,-73,170422210,170422417 +6 + chr5 170422732 170422844 chr5,170422732,170422849,+,MER103C,DNA,hAT-Charlie,119,244,-53,170422614,170422902 +5 + chr5 170486018 170486083 chr5,170486018,170486083,+,(TTC)n,Simple_repeat,Simple_repeat,1,62,0,170486018,170486083 -6 + chr5 170486099 170486138 chr5,170486099,170486138,-,MIRc,SINE,MIR,-148,120,82,170485951,170486219 +6 - chr5 170639449 170639546 chr5,170639449,170639592,+,MIR,SINE,MIR,22,176,-86,170639428,170639678 -2 + chr5 170679166 170679260 chr5,170679166,170679319,-,MER63D,DNA,hAT-Blackjack,-48,162,1,170679118,170679319 +2 - chr5 170747047 170747079 chr5,170746944,170747079,+,MIR,SINE,MIR,34,164,-104,170746911,170747183 -5 + chr5 170747079 170747193 chr5,170747079,170747387,+,AluJr,SINE,Alu,2,306,-6,170747078,170747393 -2 + chr5 170767204 170767453 chr5,170764374,170767453,-,HERVH-int,LTR,ERV1,-4726,2987,1,170759648,170767453 +5 - chr5 170767455 170767558 chr5,170767455,170767864,-,LTR7,LTR,ERV1,-2,448,1,170767453,170767864 +1 - chr5 170788204 170788341 chr5,170788070,170788378,+,AluJb,SINE,Alu,3,310,-2,170788068,170788380 -3 + chr5 171773695 171773888 chr5,171773695,171773888,-,Charlie8,DNA,hAT-Charlie,-2185,243,45,171771510,171773932 -6 - chr5 171774342 171774447 chr5,171774303,171774447,-,MIRb,SINE,MIR,-94,174,34,171774209,171774480 -2 - chr5 171774586 171774620 chr5,171774586,171774620,+,(CCCTA)n,Simple_repeat,Simple_repeat,1,34,0,171774586,171774620 +6 + chr5 172557867 172557940 chr5,172557850,172557940,-,MIR,SINE,MIR,-14,248,159,172557836,172558098 +4 - chr5 172557973 172558095 chr5,172557973,172558143,-,L2c,LINE,L2,-158,3217,3038,172557815,172561180 +2 - chr5 172558939 172559014 chr5,172558915,172559039,+,MIRb,SINE,MIR,117,234,-34,172558799,172559073 -1 + chr5 172609244 172609444 chr5,172609244,172609510,+,L1ME4a,LINE,L1,5413,5672,-452,172603832,172609962 -1 + chr5 172690500 172690564 chr5,172690500,172690564,-,L2c,LINE,L2,-8,3379,3321,172690492,172693884 +6 - chr5 172759099 172759153 chr5,172759099,172759262,+,L1MEg,LINE,L1,6,175,-5909,172759094,172765171 +4 + chr5 172816621 172816632 chr5,172816337,172816632,-,L2b,LINE,L2,-13,3362,3052,172816324,172819683 -1 - chr5 172819515 172819636 chr5,172819515,172819636,-,MIR3,SINE,MIR,-22,186,60,172819493,172819695 -6 - chr5 172819679 172819751 chr5,172819679,172819751,-,MIRb,SINE,MIR,-82,186,110,172819597,172819860 -6 - chr5 172819947 172819958 chr5,172819947,172819979,+,(TATTTA)n,Simple_repeat,Simple_repeat,1,32,0,172819947,172819979 +5 + chr5 172955154 172955428 chr5,172955129,172955428,-,AluSx1,SINE,Alu,-6,306,1,172955123,172955428 +5 - chr5 172955769 172955843 chr5,172955769,172955895,-,MIRb,SINE,MIR,-94,174,42,172955675,172955936 -4 - chr5 172955769 172955895 chr5,172955769,172955895,-,MIRb,SINE,MIR,-94,174,42,172955675,172955936 +6 - chr5 172957004 172957119 chr5,172956952,172957119,-,MIR,SINE,MIR,-79,183,15,172956873,172957133 -2 - chr5 172957405 172957534 chr5,172957405,172957534,+,L2c,LINE,L2,3254,3387,0,172954152,172957534 -6 + chr5 172957534 172957651 chr5,172957534,172957651,+,(GAAT)n,Simple_repeat,Simple_repeat,1,118,0,172957534,172957651 -6 + chr5 172957982 172958257 chr5,172957982,172958284,+,AluSp,SINE,Alu,1,303,-10,172957982,172958294 -2 + chr5 172958425 172958477 chr5,172958425,172958477,+,L2c,LINE,L2,3335,3386,-1,172955091,172958478 -6 + chr5 173414035 173414120 chr5,173413952,173414202,+,Tigger2,DNA,TcMar-Tigger,2280,2542,-176,173411673,173414378 +1 + chr5 173443900 173443939 chr5,173443800,173443939,+,MLT1K,LTR,ERVL-MaLR,416,578,-17,173443385,173443956 +2 + chr5 173445328 173445375 chr5,173444948,173445375,+,MLT1D,LTR,ERVL-MaLR,19,505,0,173444930,173445375 +2 + chr5 173445379 173445428 chr5,173445379,173445970,-,L2a,LINE,L2,-658,2761,2108,173444721,173448077 -4 - chr5 173463500 173463744 chr5,173463359,173463824,+,MLT1L,LTR,ERVL-MaLR,136,605,-5,173463224,173463829 +1 + chr5 173469800 173469881 chr5,173469800,173469910,-,L3,LINE,CR1,0,4099,3984,173469800,173473893 -5 - chr5 173484248 173484355 chr5,173484138,173484355,-,MIR,SINE,MIR,-3,259,5,173484135,173484359 -2 - chr5 173563495 173563544 chr5,173563374,173563607,-,MIR,SINE,MIR,-3,259,13,173563371,173563619 -3 - chr5 173572881 173572951 chr5,173572602,173572951,-,MER102b,DNA,hAT-Charlie,-4,337,1,173572598,173572951 -2 - chr5 173574997 173575078 chr5,173574997,173575078,-,MIRb,SINE,MIR,-71,197,120,173574926,173575197 -6 - chr5 173575180 173575254 chr5,173575180,173575271,-,L2c,LINE,L2,-42,3345,3241,173575138,173578511 -4 - chr5 173576136 173576275 chr5,173576132,173576306,-,L2c,LINE,L2,-43,3344,3146,173576089,173579451 -5 - chr5 173579643 173579682 chr5,173579189,173579729,-,MLT1F,LTR,ERVL-MaLR,0,548,2,173579189,173579730 -1 - chr5 173580229 173580384 chr5,173579967,173580384,-,L1ME4a,LINE,L1,-297,5827,5485,173579670,173585868 -2 - chr5 173580417 173580674 chr5,173580417,173580674,+,L1ME3G,LINE,L1,1,231,-661,173580417,173581335 +6 + chr5 173580703 173580787 chr5,173580703,173580787,+,L2c,LINE,L2,2977,3075,-312,173577727,173581099 +6 + chr5 173580816 173581074 chr5,173580816,173581074,+,L1ME3G,LINE,L1,5684,5815,-2067,173575133,173583141 +6 + chr5 173581078 173581279 chr5,173581078,173581279,+,MIR,SINE,MIR,3,198,-64,173581076,173581343 +6 + chr5 173581402 173581452 chr5,173581402,173581452,+,(AC)n,Simple_repeat,Simple_repeat,1,50,0,173581402,173581452 +6 + chr5 173583316 173583387 chr5,173583316,173583387,-,LTR85c,LTR,Gypsy?,-743,80,8,173582573,173583394 -6 - chr5 173584110 173584472 chr5,173584068,173584472,+,L1ME5,LINE,L1,5426,5842,-352,173578643,173584824 +2 + chr5 173584579 173585051 chr5,173584579,173585051,+,MLT1H1,LTR,ERVL-MaLR,1,491,-64,173584579,173585115 +6 + chr5 173642519 173642642 chr5,173642505,173642642,+,MLT1K,LTR,ERVL-MaLR,337,470,-125,173642169,173642767 +1 + chr5 173701598 173701686 chr5,173701598,173701763,-,MIRc,SINE,MIR,-55,175,2,173701543,173701764 -4 - chr5 173707810 173707875 chr5,173707810,173708403,+,L1ME3E,LINE,L1,5614,6229,-13,173702197,173708416 -2 + chr5 173710440 173710738 chr5,173710428,173710738,-,AluSz6,SINE,Alu,0,312,1,173710428,173710738 +5 - chr5 173710738 173710814 chr5,173710738,173710814,+,MIRb,SINE,MIR,144,207,-61,173710595,173710875 -6 + chr5 173711338 173711542 chr5,173711338,173711542,+,L2b,LINE,L2,3216,3422,-4,173708123,173711546 -6 + chr5 173711543 173711817 chr5,173711543,173711817,+,(GATG)n,Simple_repeat,Simple_repeat,1,280,0,173711543,173711817 -6 + chr5 173719284 173719370 chr5,173719284,173719370,+,(GT)n,Simple_repeat,Simple_repeat,1,88,0,173719284,173719370 -6 + chr5 173719544 173719580 chr5,173719544,173719580,+,(TG)n,Simple_repeat,Simple_repeat,1,36,0,173719544,173719580 -6 + chr5 173719582 173719623 chr5,173719582,173719623,+,(AG)n,Simple_repeat,Simple_repeat,1,41,0,173719582,173719623 -6 + chr5 173746020 173746211 chr5,173745880,173746596,+,MER4A,LTR,ERV1,1,664,0,173745880,173746596 -1 + chr5 173786840 173787247 chr5,173786840,173787273,+,L2b,LINE,L2,2956,3364,-11,173783885,173787284 -5 + chr5 173788363 173788413 chr5,173788167,173788483,+,AluSx4,SINE,Alu,3,310,0,173788165,173788483 -1 + chr5 173789604 173789662 chr5,173789604,173790042,-,L2b,LINE,L2,-2,3373,2919,173789602,173792960 +2 - chr5 173790732 173790899 chr5,173790732,173790899,-,MER115,DNA,hAT-Tip100,-48,645,469,173790684,173791367 +5 - chr5 173808847 173809039 chr5,173808847,173809163,+,AluJb,SINE,Alu,1,307,-5,173808847,173809168 -1 + chr5 174056176 174056261 chr5,174056176,174056366,+,MIRb,SINE,MIR,54,244,-24,174056123,174056390 -2 + chr5 174056499 174056585 chr5,174056402,174056641,+,MIRb,SINE,MIR,42,249,-19,174056361,174056660 -1 + chr5 174081506 174081619 chr5,174081361,174081632,-,L1MD,LINE,L1,-2221,3925,3629,174079140,174085260 +5 - chr5 174082567 174082627 chr5,174082567,174082709,+,MIRb,SINE,MIR,69,240,-28,174082499,174082737 -2 + chr5 174086398 174086559 chr5,174086357,174086566,+,MER102b,DNA,hAT-Charlie,104,316,-25,174086254,174086591 -1 + chr5 174173229 174173323 chr5,174173229,174173393,-,MIRb,SINE,MIR,-82,186,27,174173147,174173419 -4 - chr5 174181623 174181814 chr5,174181623,174181826,+,MIRb,SINE,MIR,44,260,-8,174181580,174181834 +5 + chr5 174329612 174329670 chr5,174329562,174329677,+,MIRb,SINE,MIR,117,233,-35,174329446,174329712 +1 + chr5 174336430 174336531 chr5,174336430,174336531,-,MIR3,SINE,MIR,-25,183,81,174336405,174336611 -1 - chr5 174336542 174336576 chr5,174336542,174336748,-,MER96B,DNA,hAT-Tip100,-180,237,33,174336362,174336780 -4 - chr5 174503880 174503941 chr5,174503880,174503941,-,MamRTE1,LINE,RTE-BovB,-2552,1260,1199,174501328,174505139 -6 - chr5 174517759 174517905 chr5,174517616,174517967,+,MLT1I,LTR,ERVL-MaLR,82,407,-4,174517535,174517971 +1 + chr5 174524062 174524161 chr5,174523795,174524179,-,MLT1D,LTR,ERVL-MaLR,0,467,53,174523795,174524231 -3 - chr5 174526228 174526244 chr5,174525846,174526244,+,LTR16A,LTR,ERVL,1,451,0,174525846,174526244 +2 + chr5 174526968 174527045 chr5,174526968,174527191,+,MER33,DNA,hAT-Charlie,49,284,-40,174526920,174527231 +5 + chr5 174528630 174528715 chr5,174528630,174528925,+,AluSq,SINE,Alu,1,306,-7,174528630,174528932 +5 + chr5 174531330 174531403 chr5,174531228,174531428,-,MIRb,SINE,MIR,-38,230,35,174531190,174531462 -3 - chr5 174618164 174618235 chr5,174617998,174618235,-,MIRc,SINE,MIR,-3,265,15,174617995,174618249 -1 - chr5 174621465 174621570 chr5,174621402,174621570,-,MIRb,SINE,MIR,-19,249,45,174621383,174621614 -2 - chr5 174625757 174625775 chr5,174625757,174625891,+,FRAM,SINE,Alu,41,174,-2,174625717,174625893 +5 + chr5 174820027 174820044 chr5,174819928,174820044,+,MLT1I,LTR,ERVL-MaLR,405,532,-17,174819524,174820061 +1 + chr5 174826122 174826324 chr5,174826018,174826444,+,MLT1C,LTR,ERVL-MaLR,1,410,-57,174826018,174826501 +5 + chr5 174847669 174847723 chr5,174847669,174847852,+,L1MC4,LINE,L1,6864,7062,-980,174840806,174848832 +4 + chr5 174848965 174848998 chr5,174848957,174849074,+,MLT1A,LTR,ERVL-MaLR,258,374,0,174848700,174849074 +3 + chr5 174919611 174919725 chr5,174919611,174919883,+,AluJr4,SINE,Alu,2,275,-37,174919610,174919920 -2 + chr5 174976449 174976532 chr5,174976394,174976659,+,MIR,SINE,MIR,2,260,-2,174976393,174976661 -3 + chr5 174986295 174986329 chr5,174986006,174986329,+,L2a,LINE,L2,3097,3426,0,174982910,174986329 +1 + chr5 174986821 174987050 chr5,174986819,174987100,+,MLT1B,LTR,ERVL-MaLR,89,385,-5,174986731,174987105 +5 + chr5 174994513 174995513 chr5,174994513,174996512,-,L2b,LINE,L2,-183,3192,958,174994330,174997469 +1 - chr5 175709603 175709824 chr5,175709160,175709824,+,L2b,LINE,L2,2106,2830,-589,175707055,175710413 +1 + chr5 175710017 175710286 chr5,175710017,175710286,+,L2b,LINE,L2,3097,3373,-2,175706921,175710288 +6 + chr5 175710287 175710374 chr5,175710287,175710374,-,Tigger19b,DNA,TcMar-Tigger,-403,147,50,175709884,175710423 -6 - chr5 175903874 175904181 chr5,175903844,175904181,-,MLT1A0,LTR,ERVL-MaLR,-17,348,1,175903827,175904181 +5 - chr5 175904185 175904371 chr5,175904185,175905019,+,ERV3-16A3_I-int,LTR,ERVL,1413,2348,-2878,175902773,175907897 -1 + chr5 175906939 175907185 chr5,175906370,175907185,+,ERV3-16A3_I-int,LTR,ERVL,4151,4959,-267,175902220,175907452 -5 + chr5 175907384 175907419 chr5,175907384,175907757,+,LTR16A,LTR,ERVL,1,426,-25,175907384,175907782 -2 + chr5 175972892 175972938 chr5,175972892,175972938,-,MLT2F,LTR,ERVL,0,563,518,175972892,175973455 -6 - chr5 175979167 175979408 chr5,175978965,175979882,+,LTR28B,LTR,ERV1,1,974,0,175978965,175979882 +5 + chr5 175985673 175985856 chr5,175985673,175986258,-,LTR10C,LTR,ERV1,-62,529,1,175985611,175986258 -5 - chr5 176042299 176042776 chr5,176042248,176042776,+,Tigger7,DNA,TcMar-Tigger,3,549,-1,176042246,176042777 +2 + chr5 176131282 176131302 chr5,176130718,176131302,-,L1M2,LINE,L1,-3191,2952,2304,176127527,176133605 +4 - chr5 176143085 176143413 chr5,176143000,176143413,-,MER41C,LTR,ERV1,0,521,1,176143000,176143413 +5 - chr5 176143413 176143626 chr5,176143413,176144373,-,PRIMA41-int,LTR,ERV1,0,7756,6759,176143413,176151131 +5 - chr5 176167895 176168038 chr5,176167895,176168757,+,L1MC4,LINE,L1,7136,8019,-23,176160760,176168780 -1 + chr5 176171753 176171853 chr5,176171540,176171853,-,AluJb,SINE,Alu,-20,292,1,176171520,176171853 +4 - chr5 176173345 176173391 chr5,176173241,176173391,+,HAL1M8,LINE,L1,872,1022,-1969,176172370,176175360 -5 + chr5 176185206 176185342 chr5,176185206,176185423,-,HSATI,Satellite,Satellite,-322,255,44,176184884,176185466 +2 - chr5 176187403 176187596 chr5,176187271,176187775,-,MLT1G3,LTR,ERVL-MaLR,-32,563,10,176187239,176187784 +3 - chr5 176353255 176353301 chr5,176353162,176353301,-,MER5A,DNA,hAT-Charlie,-55,134,1,176353107,176353301 -2 - chr5 176354206 176354312 chr5,176354151,176354312,-,MIRb,SINE,MIR,-43,225,47,176354108,176354358 -1 - chr5 176354356 176354477 chr5,176354356,176354477,-,L4_B_Mam,LINE,RTE-X,-3561,1380,1258,176350795,176355734 -6 - chr5 176355997 176356135 chr5,176355974,176356135,-,AluJb,SINE,Alu,-9,303,130,176355965,176356264 -2 - chr5 176439193 176439238 chr5,176439193,176439480,+,AluJb,SINE,Alu,2,282,-30,176439192,176439510 +5 + chr5 176707437 176707714 chr5,176707437,176707974,-,MLT1K,LTR,ERVL-MaLR,0,595,13,176707437,176707986 +2 - chr5 176728539 176728612 chr5,176728539,176728612,+,MIRb,SINE,MIR,110,184,-84,176728430,176728696 -6 + chr5 176729000 176729072 chr5,176728917,176729341,+,L2a,LINE,L2,2960,3426,0,176725958,176729341 -3 + chr5 176739396 176739426 chr5,176739323,176739426,+,MIR3,SINE,MIR,33,137,-71,176739291,176739497 -4 + chr5 177051714 177051836 chr5,177051530,177051836,-,AluSc,SINE,Alu,-4,305,1,177051526,177051836 -1 - chr5 177051836 177051878 chr5,177051836,177051878,-,MER102b,DNA,hAT-Charlie,-226,115,76,177051610,177051953 -6 - chr5 177052394 177052482 chr5,177052172,177052482,-,AluSz,SINE,Alu,-15,297,1,177052157,177052482 -2 - chr5 177052755 177052850 chr5,177052755,177052850,+,Tigger5b,DNA,TcMar-Tigger,1,92,-380,177052755,177053230 +6 + chr5 177052868 177052923 chr5,177052868,177052923,+,Tigger5b,DNA,TcMar-Tigger,418,472,0,177052451,177052923 +6 + chr5 177438503 177438649 chr5,177438382,177438649,-,L2a,LINE,L2,-212,3214,2950,177438170,177441598 +5 - chr5 177438795 177438852 chr5,177438795,177438852,-,AluSz,SINE,Alu,-214,98,42,177438581,177438893 +6 - chr5 177438856 177438870 chr5,177438856,177438945,-,L1M4,LINE,L1,-522,5656,5565,177438334,177444509 +2 - chr5 177439914 177440031 chr5,177439558,177440124,-,L1MB8,LINE,L1,-67,6111,5547,177439491,177445670 +3 - chr5 177444442 177444594 chr5,177444442,177444832,-,L2c,LINE,L2,0,3387,2919,177444442,177447750 +1 - chr5 177476631 177476655 chr5,177476466,177476655,+,MIR,SINE,MIR,74,262,0,177476393,177476655 -5 + chr5 177476646 177476808 chr5,177476646,177476808,-,MIRb,SINE,MIR,-108,160,3,177476538,177476810 +6 - chr5 177477043 177477137 chr5,177477043,177477137,+,MLT1K,LTR,ERVL-MaLR,203,288,-307,177476841,177477444 -6 + chr5 177477137 177477446 chr5,177477137,177477446,+,AluSc,SINE,Alu,2,309,0,177477136,177477446 -6 + chr5 177477446 177477709 chr5,177477446,177477709,+,MLT1K,LTR,ERVL-MaLR,289,554,-41,177477158,177477750 -6 + chr5 177478505 177478799 chr5,177478505,177478799,-,AluSx1,SINE,Alu,-17,295,2,177478488,177478800 +6 - chr5 177478799 177478906 chr5,177478799,177478906,-,MIRb,SINE,MIR,-110,152,44,177478689,177478949 +6 - chr5 177478989 177479117 chr5,177478989,177479117,+,MIRb,SINE,MIR,76,205,-63,177478914,177479180 -6 + chr5 177479166 177479206 chr5,177479166,177479206,+,(GCTCCA)n,Simple_repeat,Simple_repeat,1,42,0,177479166,177479206 -6 + chr5 177479362 177479656 chr5,177479362,177479693,+,L2a,LINE,L2,1866,2227,-1192,177477497,177480885 -1 + chr5 177554842 177554956 chr5,177554842,177554956,-,MIRc,SINE,MIR,-32,236,108,177554810,177555063 -6 - chr5 177555053 177555159 chr5,177555053,177555159,-,L2b,LINE,L2,-32,3343,3217,177555021,177558375 -6 - chr5 177611867 177612001 chr5,177611867,177612100,-,MIR,SINE,MIR,0,262,9,177611867,177612108 -4 - chr5 177618916 177618980 chr5,177618880,177618980,+,L2,LINE,L2,1917,2014,-1405,177616964,177620385 +2 + chr5 177619445 177619754 chr5,177619445,177619810,+,MLT1J2,LTR,ERVL-MaLR,46,448,0,177619400,177619810 +5 + chr5 177682294 177682371 chr5,177681956,177682437,+,MER90a,LTR,ERV1,83,612,-2,177681874,177682439 +1 + chr5 177801305 177801783 chr5,177801305,177801833,-,Tigger7,DNA,TcMar-Tigger,-1,549,3,177801304,177801835 +2 - chr5 177857945 177858127 chr5,177857542,177858127,+,LTR10C,LTR,ERV1,1,529,-62,177857542,177858189 -5 + chr5 177864393 177864634 chr5,177863918,177864835,-,LTR28B,LTR,ERV1,0,974,1,177863918,177864835 +5 - chr5 177870866 177870912 chr5,177870866,177870912,+,MLT2F,LTR,ERVL,518,563,0,177870349,177870912 -6 + chr5 177953165 177953290 chr5,177952974,177953290,-,AluSg4,SINE,Alu,-9,301,1,177952965,177953290 -1 - chr5 177959806 177960008 chr5,177959806,177960008,-,AluY,SINE,Alu,-14,297,95,177959792,177960102 -6 - chr5 177963827 177963925 chr5,177963722,177963925,-,L1ME3A,LINE,L1,0,6173,5979,177963722,177969903 -2 - chr5 177967004 177967352 chr5,177966702,177967352,-,MER4D0,LTR,ERV1,-237,635,1,177966465,177967352 -1 - chr5 177967447 177967457 chr5,177967447,177967656,-,Charlie1b,DNA,hAT-Charlie,-112,411,194,177967335,177967849 -5 - chr5 177982826 177982887 chr5,177982826,177982887,+,L2a,LINE,L2,3358,3418,-8,177979469,177982895 +6 + chr5 178351918 178352087 chr5,178351727,178352087,+,MLT1B,LTR,ERVL-MaLR,1,386,-4,178351727,178352091 +2 + chr5 178438841 178439013 chr5,178438841,178439013,+,MER5B,DNA,hAT-Charlie,1,173,-5,178438841,178439018 -6 + chr5 178439027 178439162 chr5,178439027,178439162,+,MER5B,DNA,hAT-Charlie,21,177,-1,178439007,178439163 -6 + chr5 178439466 178439573 chr5,178439466,178439573,+,L2b,LINE,L2,2742,2855,-564,178436725,178440137 -6 + chr5 178439594 178439969 chr5,178439594,178440182,+,L1ME1,LINE,L1,5536,6179,0,178434059,178440182 -2 + chr5 178443081 178443094 chr5,178443081,178443237,-,Helitron2Na_Mam,RC?,Helitron?,-6,318,161,178443075,178443397 +1 - chr5 178938823 178938942 chr5,178938823,178938942,+,MIR,SINE,MIR,84,228,-34,178938740,178938976 -6 + chr5 178938942 178939223 chr5,178938942,178939229,+,AluSp,SINE,Alu,1,294,-19,178938942,178939248 -1 + chr5 178989747 178989877 chr5,178989716,178989877,+,MLT1L,LTR,ERVL-MaLR,231,460,-150,178989486,178990027 +2 + chr5 179455729 179455817 chr5,179455729,179456000,-,MER61A,LTR,ERV1,0,427,112,179455729,179456111 -4 - chr5 179455938 179456000 chr5,179455729,179456000,-,MER61A,LTR,ERV1,0,427,112,179455729,179456111 -2 - chr5 179503322 179503541 chr5,179503305,179503541,+,MER102b,DNA,hAT-Charlie,90,332,-9,179503216,179503550 -5 + chr5 179503696 179503740 chr5,179503696,179503921,+,Charlie1a,DNA,hAT-Charlie,16,256,-1199,179503681,179505120 -2 + chr5 179595904 179596449 chr5,179595849,179596449,+,L1ME1,LINE,L1,5476,6106,-73,179590374,179596522 -5 + chr5 179598253 179598355 chr5,179598212,179598377,+,AluJb,SINE,Alu,132,297,-15,179598081,179598392 -3 + chr5 179599268 179599380 chr5,179599225,179599380,-,L2a,LINE,L2,-509,2910,2736,179598716,179602115 +4 - chr5 179602645 179602706 chr5,179602645,179602706,-,MLT1K,LTR,ERVL-MaLR,-6,589,527,179602639,179603232 +6 - chr5 179658385 179658481 chr5,179658385,179658500,-,LTR16E2,LTR,ERVL,-422,146,28,179657963,179658527 -5 - chr5 179662975 179663103 chr5,179662948,179663259,-,AluSp,SINE,Alu,-11,302,1,179662937,179663259 -3 - chr5 179860207 179860226 chr5,179860207,179860226,+,(GT)n,Simple_repeat,Simple_repeat,1,19,0,179860207,179860226 +6 + chr5 179860298 179860372 chr5,179860298,179860372,+,MER89,LTR,ERV1,1,80,-479,179860298,179860851 +6 + chr5 179860392 179860674 chr5,179860392,179860674,+,MER89,LTR,ERV1,229,558,-1,179860164,179860675 +6 + chr5 180078375 180078466 chr5,180078375,180078466,-,L1MC5,LINE,L1,-6,9298,9208,180078369,180087673 +6 - chr5 180078519 180078974 chr5,180078519,180078974,+,MER1A,DNA,hAT-Charlie,78,529,0,180078442,180078974 -6 + chr5 180079382 180079501 chr5,180079382,180079501,-,MamRep4096,DNA,hAT-Tip100,-289,137,1,180079093,180079501 +6 - chr5 180079733 180079904 chr5,180079733,180079904,-,MIRb,SINE,MIR,-69,199,14,180079664,180079917 +6 - chr5 180080107 180080155 chr5,180080107,180080155,+,X7C_LINE,LINE,CR1,132,179,-57,180079976,180080212 -6 + chr5 180080391 180081081 chr5,180080391,180081081,-,LTR12_,LTR,ERV1,0,688,1,180080391,180081081 +6 - chr5 180081658 180081691 chr5,180081658,180081929,+,L1ME4c,LINE,L1,412,711,-119,180081247,180082048 -1 + chr5 180295035 180295253 chr5,180294911,180295309,+,MSTC,LTR,ERVL-MaLR,6,428,0,180294906,180295309 +5 + chr5 180441559 180441678 chr5,180441551,180441678,+,L1ME4c,LINE,L1,306,433,-397,180441246,180442075 +1 + chr5 180442825 180443052 chr5,180442825,180443052,+,MLT1A1,LTR,ERVL-MaLR,173,407,-1,180442653,180443053 +6 + chr5 180443055 180443238 chr5,180443055,180443289,-,L1M4,LINE,L1,-677,5503,5277,180442378,180448565 -5 - chr5 180685649 180685807 chr5,180685596,180685807,-,L1M5,LINE,L1,-2361,3785,3574,180683235,180689380 -2 - chr5 180784940 180785056 chr5,180784940,180785056,+,L1ME2z,LINE,L1,6328,6440,-4,180778613,180785060 -6 + chr5 180785295 180785452 chr5,180785295,180785452,-,MLT1F1,LTR,ERVL-MaLR,-11,558,395,180785284,180785846 +6 - chr5 180785517 180785665 chr5,180785517,180785665,-,MLT1F1,LTR,ERVL-MaLR,-328,263,120,180785189,180785784 +6 - chr5 180786505 180786790 chr5,180786505,180786790,+,MLT1J,LTR,ERVL-MaLR,106,408,-104,180786400,180786894 -6 + chr5 180830359 180830506 chr5,180830359,180830506,+,MLT1D,LTR,ERVL-MaLR,248,398,-114,180830112,180830620 -6 + chr5 180830726 180830835 chr5,180830726,180830835,-,MER67A,LTR,ERV1,-15,528,414,180830711,180831248 +6 - chr5 180831009 180831181 chr5,180831009,180831181,-,MER67A,LTR,ERV1,-475,186,1,180830534,180831181 -1 - chr5 180831009 180831181 chr5,180831009,180831181,-,MER67A,LTR,ERV1,-475,186,1,180830534,180831181 +1 - chr5 180831185 180831202 chr5,180831185,180831202,+,(CCG)n,Simple_repeat,Simple_repeat,1,17,0,180831185,180831202 +6 + chr5 180831185 180831202 chr5,180831185,180831202,+,(CCG)n,Simple_repeat,Simple_repeat,1,17,0,180831185,180831202 -6 + chr5 180831415 180831530 chr5,180831415,180831530,-,AluSq2,SINE,Alu,-17,296,182,180831398,180831711 -6 - chr5 180831415 180831530 chr5,180831415,180831530,-,AluSq2,SINE,Alu,-17,296,182,180831398,180831711 +6 - chr5 180832717 180832860 chr5,180832717,180832896,+,MER5A,DNA,hAT-Charlie,1,189,0,180832717,180832896 +4 + chr5 180834312 180834400 chr5,180834286,180834400,-,FRAM,SINE,Alu,-32,144,30,180834254,180834429 -2 - chr5 180834400 180834454 chr5,180834400,180834454,-,MSTD,LTR,ERVL-MaLR,-342,54,1,180834058,180834454 -6 - chr5 180834454 180834667 chr5,180834454,180834667,+,MLT1A0,LTR,ERVL-MaLR,134,350,-15,180834321,180834682 +6 + chr5 180834767 180834865 chr5,180834767,180834865,+,MLT2B3,LTR,ERVL,1,108,-446,180834767,180835311 +5 + chr5 180834905 180835076 chr5,180834905,180835076,+,MLT1A0,LTR,ERVL-MaLR,133,300,-65,180834773,180835141 +6 + chr5 180835076 180835157 chr5,180835076,180835157,-,MLT2B3,LTR,ERVL,-139,415,329,180834937,180835485 -6 - chr5 180835164 180835490 chr5,180835164,180835490,+,MLT2B3,LTR,ERVL,118,454,-100,180835047,180835590 +6 + chr5 180835491 180835629 chr5,180835491,180835629,+,MIR,SINE,MIR,65,208,-54,180835427,180835683 +6 + chr5 181191742 181191758 chr5,181191686,181191758,-,tRNA-Thr-ACA,tRNA,tRNA,-3,73,1,181191683,181191758 +4 - chr5 181191959 181191997 chr5,181191959,181191997,+,G-rich,Low_complexity,Low_complexity,1,40,0,181191959,181191997 +6 + chr5 181193342 181193467 chr5,181193199,181193734,+,LTR82A,LTR,ERVL,283,872,0,181192917,181193734 +3 + chr5 181194259 181194390 chr5,181194259,181194390,+,AluJr4,SINE,Alu,4,133,-179,181194256,181194569 +6 + chr5 181199549 181199591 chr5,181199549,181199622,+,MER112,DNA,hAT-Charlie,95,168,-93,181199455,181199715 +4 + chr5 181200938 181201016 chr5,181200938,181201036,-,MIR,SINE,MIR,-51,211,112,181200887,181201147 -4 - chr5 181202200 181202305 chr5,181202170,181202478,-,AluSp,SINE,Alu,-4,309,1,181202166,181202478 -5 - chr5 181202588 181202863 chr5,181202559,181202863,-,AluY,SINE,Alu,-5,306,1,181202554,181202863 -2 - chr5 181205361 181205386 chr5,181205340,181205386,+,(CCCGCC)n,Simple_repeat,Simple_repeat,1,46,0,181205340,181205386 -5 + chr5 181205994 181206120 chr5,181205821,181206385,+,L2b,LINE,L2,2921,3370,-5,181202901,181206390 -1 + chr5 181256371 181256498 chr5,181256371,181256498,-,AluYc3,SINE,Alu,-15,285,160,181256356,181256657 -6 - chr5 181263628 181263679 chr5,181263482,181263679,-,MER112,DNA,hAT-Charlie,-14,247,26,181263468,181263704 -1 - chr5 181263759 181263882 chr5,181263759,181263882,+,L2a,LINE,L2,3303,3425,-1,181260457,181263883 +6 + chr5 181264125 181264261 chr5,181264125,181264265,+,AluJr,SINE,Alu,1,133,-179,181264125,181264444 +5 + chr5 181271573 181271689 chr5,181271546,181271843,-,AluSc8,SINE,Alu,-11,300,1,181271535,181271843 -3 - chr5 181281375 181281569 chr5,181279891,181281569,+,REP522,Satellite,telo,1,1690,-1255,181279891,181282824 +1 + chr5 181283342 181283512 chr5,181283332,181283512,-,REP522,Satellite,telo,-1082,735,561,181282250,181284072 -2 - chr5 181306502 181306576 chr5,181306270,181306576,-,AluJo,SINE,Alu,-9,303,1,181306261,181306576 -1 - chr5 181306576 181306652 chr5,181306576,181306886,-,MER21C,LTR,ERVL,-333,605,272,181306243,181307157 -4 - chr5 181313829 181313952 chr5,181313815,181314109,-,AluJr,SINE,Alu,-18,294,5,181313797,181314113 -3 - chr5 181315837 181315953 chr5,181315816,181316101,-,AluJb,SINE,Alu,-18,294,11,181315798,181316111 -3 - chr5 181316466 181316497 chr5,181316466,181316898,+,MER1A,DNA,hAT-Charlie,56,490,-39,181316411,181316937 +4 + chr5 181320495 181320552 chr5,181320214,181320634,+,MER1A,DNA,hAT-Charlie,1,439,-90,181320214,181320724 +3 + chr5 181321652 181321811 chr5,181321623,181321811,-,AluJb,SINE,Alu,-9,303,117,181321614,181321927 -2 - chr5 181321811 181321842 chr5,181321811,181321913,+,MER8,DNA,TcMar-Tigger,137,237,-2,181321675,181321915 +5 + chr5 181323902 181323959 chr5,181323621,181324041,+,MER1A,DNA,hAT-Charlie,1,439,-90,181323621,181324131 +3 + chr5 181329346 181329382 chr5,181329346,181329382,+,(CAGCACC)n,Simple_repeat,Simple_repeat,1,37,0,181329346,181329382 +6 + chr6 182366 182474 chr6,182342,182772,+,LTR106_Mam,LTR,LTR,83,573,-135,182260,182907 -3 + chr6 186515 186561 chr6,186515,186685,-,MIR,SINE,MIR,-82,180,1,186433,186685 +2 - chr6 187736 187799 chr6,187172,187799,+,LTR71B,LTR,ERV1,1,609,-1,187172,187800 -4 + chr6 203601 203796 chr6,203601,203796,+,L2a,LINE,L2,2357,2549,-870,201245,204666 +6 + chr6 204103 204177 chr6,204103,204177,+,L2a,LINE,L2,3355,3423,-3,200749,204180 +6 + chr6 204302 204413 chr6,204302,204427,-,Charlie4z,DNA,hAT-Charlie,-38,129,1,204264,204427 -4 - chr6 204945 205127 chr6,204945,205127,+,MER20,DNA,hAT-Charlie,3,198,-21,204943,205148 -6 + chr6 205333 205425 chr6,205333,205425,+,L2c,LINE,L2,3274,3377,-10,202060,205435 -6 + chr6 205584 205782 chr6,205584,205782,-,LTR85b,LTR,Gypsy?,0,784,575,205584,206356 -6 - chr6 524285 524312 chr6,524285,524375,+,L1PA8,LINE,L1,6082,6172,0,518204,524375 +4 + chr6 524873 524899 chr6,524409,524899,-,L1M4a1,LINE,L1,-2336,3810,3445,522073,528343 -2 - chr6 524974 525144 chr6,524974,525144,-,L1MEb,LINE,L1,-5895,175,3,519079,525146 -6 - chr6 525463 525581 chr6,525463,525605,-,L3,LINE,CR1,-1102,2997,2844,524361,528448 -5 - chr6 713765 713864 chr6,713765,713864,+,MLT1I,LTR,ERVL-MaLR,311,411,0,713455,713864 +6 + chr6 750659 750729 chr6,750619,750911,-,AluSp,SINE,Alu,-19,294,1,750600,750911 -5 - chr6 761772 762029 chr6,761772,762029,-,MER121,DNA,hAT?,-93,308,52,761679,762080 -6 - chr6 762715 762765 chr6,762715,762765,-,L2b,LINE,L2,-16,3359,3302,762699,766066 -6 - chr6 762830 762844 chr6,762830,762844,-,LTR16C,LTR,ERVL,0,489,473,762830,763316 -6 - chr6 762844 762881 chr6,762844,763296,+,MLT2B1,LTR,ERVL,1,520,0,762844,763296 +4 + chr6 774747 774873 chr6,774568,774873,-,L3,LINE,CR1,-547,3552,3231,774021,778103 +5 - chr6 774882 775296 chr6,774882,775296,-,L3,LINE,CR1,-979,3120,2629,773903,777924 +6 - chr6 778760 778885 chr6,778615,778949,-,HAL1b,LINE,L1,-835,1586,1243,777780,780191 -3 - chr6 779927 780444 chr6,779384,780444,+,L1MB8,LINE,L1,5085,6157,-21,774300,780465 +1 + chr6 780002 780214 chr6,779384,780444,+,L1MB8,LINE,L1,5085,6157,-21,774300,780465 -1 + chr6 780570 780641 chr6,780570,780641,+,L1MB8,LINE,L1,6107,6177,-1,774464,780642 +6 + chr6 905485 905870 chr6,905485,905870,-,MLT1J,LTR,ERVL-MaLR,0,512,105,905485,905974 +6 - chr6 906251 906504 chr6,906251,906504,-,L1M4c,LINE,L1,-4333,2051,1801,901918,908304 +6 - chr6 958324 958432 chr6,958242,958432,-,MIRb,SINE,MIR,-18,250,52,958224,958483 +5 - chr6 1026535 1026578 chr6,1026535,1026578,+,A-rich,Low_complexity,Low_complexity,1,44,0,1026535,1026578 -6 + chr6 1101069 1101182 chr6,1101024,1101182,-,MIRb,SINE,MIR,-51,217,39,1100973,1101220 -2 - chr6 1101896 1102081 chr6,1101896,1102081,-,MIR3,SINE,MIR,-7,201,10,1101889,1102090 -6 - chr6 1103370 1103564 chr6,1103370,1103564,-,MIR3,SINE,MIR,-7,201,3,1103363,1103566 -6 - chr6 1104651 1104685 chr6,1104651,1104685,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,1104651,1104685 +6 + chr6 1104836 1104895 chr6,1104836,1104895,+,GA-rich,Low_complexity,Low_complexity,1,56,0,1104836,1104895 +6 + chr6 2263601 2263724 chr6,2261130,2263724,-,L1MC1,LINE,L1,0,6333,3750,2261130,2267473 -2 - chr6 2263927 2264128 chr6,2263927,2264312,-,MLT1G1,LTR,ERVL-MaLR,0,579,98,2263927,2264409 -5 - chr6 2269698 2269956 chr6,2269668,2269956,-,AluJo,SINE,Alu,-28,284,1,2269640,2269956 -2 - chr6 2269957 2270013 chr6,2269957,2270089,+,MER33,DNA,hAT-Charlie,165,306,-18,2269793,2270107 +5 + chr6 2271932 2272093 chr6,2271932,2272093,+,MER41C,LTR,ERV1,1,164,-357,2271932,2272450 +6 + chr6 2272084 2272158 chr6,2272084,2272158,+,MER41C,LTR,ERV1,483,557,0,2271602,2272158 +6 + chr6 2272248 2272307 chr6,2272248,2272307,+,X7C_LINE,LINE,CR1,174,233,-3,2272075,2272310 +6 + chr6 2272484 2273172 chr6,2272484,2273172,+,LTR78,LTR,ERV1,1,726,-578,2272484,2273750 +6 + chr6 2273232 2273390 chr6,2273232,2273390,+,LTR78,LTR,ERV1,863,1007,-297,2272370,2273687 +6 + chr6 2283499 2283774 chr6,2283293,2284462,+,L1MEg,LINE,L1,10,2301,-5032,2283284,2289494 +5 + chr6 2306293 2306526 chr6,2303027,2307120,+,HERVL-int,LTR,ERVL,1564,5654,0,2301464,2307120 +1 + chr6 2352517 2352666 chr6,2352517,2352666,+,L1MA5A,LINE,L1,6146,6295,-2,2346372,2352668 +6 + chr6 2391814 2391952 chr6,2391814,2391952,+,L2a,LINE,L2,3276,3426,0,2388539,2391952 +6 + chr6 2392845 2393158 chr6,2392845,2393158,-,MER1B,DNA,hAT-Charlie,0,339,1,2392845,2393158 -6 - chr6 2393286 2393450 chr6,2393286,2393450,+,MER5A1,DNA,hAT-Charlie,2,166,0,2393285,2393450 +6 + chr6 2393492 2393671 chr6,2393492,2393671,+,MIRb,SINE,MIR,53,230,-38,2393440,2393709 +6 + chr6 2395472 2395642 chr6,2395472,2395642,-,MIRb,SINE,MIR,0,268,56,2395472,2395697 -6 - chr6 2396740 2396875 chr6,2396740,2396875,+,MIRb,SINE,MIR,51,210,-58,2396690,2396933 +6 + chr6 2397975 2398307 chr6,2397975,2398307,-,L2a,LINE,L2,0,3426,3024,2397975,2401330 -6 - chr6 2398381 2398520 chr6,2398381,2398520,+,LTR104_Mam,LTR,Gypsy,908,1068,-441,2397474,2398961 +6 + chr6 2398879 2398979 chr6,2398879,2398979,-,MER81,DNA,hAT-Blackjack,0,114,3,2398879,2398981 -6 - chr6 2398999 2399037 chr6,2398999,2399157,-,MIRb,SINE,MIR,-64,204,35,2398935,2399191 -5 - chr6 2413227 2413293 chr6,2413227,2413293,+,(TTTTCT)n,Simple_repeat,Simple_repeat,1,67,0,2413227,2413293 +6 + chr6 2437999 2438030 chr6,2437999,2438030,+,(TTTACT)n,Simple_repeat,Simple_repeat,1,32,0,2437999,2438030 +6 + chr6 2438043 2438240 chr6,2438043,2438240,+,L1MC5,LINE,L1,9103,9294,-10,2428941,2438250 +6 + chr6 2453964 2453997 chr6,2453028,2453997,-,L1MB4,LINE,L1,-42,6138,5173,2452986,2459169 -2 - chr6 2562200 2562385 chr6,2562200,2562385,+,MER117,DNA,hAT-Charlie,1,190,-7,2562200,2562392 +6 + chr6 2636936 2636964 chr6,2636263,2636964,-,L1MB3,LINE,L1,-4,6179,5443,2636259,2642406 -1 - chr6 2637263 2637455 chr6,2637263,2637470,+,SST1,Satellite,centr,1349,1552,-11,2635915,2637481 +4 + chr6 2881285 2881407 chr6,2876870,2882853,+,L1PBa1,LINE,L1,253,6066,-793,2876618,2883646 -1 + chr6 2917584 2917714 chr6,2917584,2917714,+,FLAM_A,SINE,Alu,2,130,-12,2917583,2917726 +6 + chr6 2987967 2988031 chr6,2987907,2988156,-,L2c,LINE,L2,-798,2621,2362,2987109,2990517 -1 - chr6 2989586 2990082 chr6,2989586,2990082,-,LTR73,LTR,ERV1,-21,551,1,2989565,2990082 -5 - chr6 2989722 2990011 chr6,2989586,2990082,-,LTR73,LTR,ERV1,-21,551,1,2989565,2990082 +5 - chr6 2990301 2990401 chr6,2990301,2990401,+,LTR84b,LTR,ERVL,154,251,-510,2990148,2990911 +5 + chr6 2990480 2990620 chr6,2990480,2990620,+,L2b,LINE,L2,3244,3372,-3,2987237,2990623 +6 + chr6 2990657 2991173 chr6,2990657,2991209,+,LTR6A,LTR,ERV1,1,564,0,2990657,2991209 +5 + chr6 2998704 2998732 chr6,2998704,2998732,+,(AATG)n,Simple_repeat,Simple_repeat,1,28,0,2998704,2998732 -6 + chr6 2999098 2999134 chr6,2999098,2999242,-,L1MD2,LINE,L1,-87,6155,5999,2999011,3005240 +1 - chr6 3055911 3055939 chr6,3055911,3055939,+,(CATT)n,Simple_repeat,Simple_repeat,1,28,0,3055911,3055939 +6 + chr6 3056499 3056643 chr6,3056331,3056643,-,AluY,SINE,Alu,-31,280,1,3056300,3056643 -2 - chr6 3056643 3056761 chr6,3056643,3056824,+,MamGypLTR3,LTR,Gypsy,709,883,-11,3055935,3056835 +5 + chr6 3152744 3153061 chr6,3152744,3153061,+,AluJr,SINE,Alu,1,312,0,3152744,3153061 -6 + chr6 3182744 3183105 chr6,3182592,3183105,-,MER75,DNA,PiggyBac,0,514,1,3182592,3183105 +5 - chr6 3183384 3183639 chr6,3183384,3183639,-,MER92-int,LTR,ERV1,-353,4865,4618,3183031,3188256 +6 - chr6 3190827 3190958 chr6,3190809,3190958,+,HAL1,LINE,L1,543,708,-1799,3190267,3192757 -4 + chr6 3190958 3191054 chr6,3190958,3191054,-,MLT1H,LTR,ERVL-MaLR,0,549,389,3190958,3191442 +6 - chr6 3191215 3191257 chr6,3191215,3191327,-,MLT1H,LTR,ERVL-MaLR,-382,167,58,3190833,3191384 +2 - chr6 3195666 3195756 chr6,3195583,3195991,-,MSTA,LTR,ERVL-MaLR,0,428,1,3195583,3195991 +1 - chr6 3311818 3311974 chr6,3311818,3311974,+,MIR3,SINE,MIR,19,193,-15,3311800,3311989 +6 + chr6 3594247 3594313 chr6,3594159,3594313,+,MER5A,DNA,hAT-Charlie,7,185,-4,3594153,3594317 -5 + chr6 3623648 3623882 chr6,3623467,3623882,-,L1MB3,LINE,L1,-40,6143,5711,3623427,3629592 +4 - chr6 3751243 3751298 chr6,3751243,3751298,+,(CCCGCG)n,Simple_repeat,Simple_repeat,1,57,0,3751243,3751298 +6 + chr6 3751560 3751585 chr6,3751560,3751585,+,(CCCG)n,Simple_repeat,Simple_repeat,1,25,0,3751560,3751585 +6 + chr6 3752158 3752212 chr6,3752158,3752212,+,G-rich,Low_complexity,Low_complexity,1,54,0,3752158,3752212 +6 + chr6 3753119 3753621 chr6,3753119,3753621,+,LTR45,LTR,ERV1,1,509,-16,3753119,3753637 +6 + chr6 3753621 3753871 chr6,3753621,3753977,+,MER51B,LTR,ERV1,1,377,0,3753621,3753977 +5 + chr6 3831951 3832011 chr6,3831951,3832065,-,L2b,LINE,L2,-326,3061,2951,3831625,3835015 -4 - chr6 3855470 3855584 chr6,3855288,3855584,-,AluY,SINE,Alu,-14,297,2,3855274,3855585 -2 - chr6 3855584 3855737 chr6,3855584,3855932,+,MER21C,LTR,ERVL,400,778,-160,3855185,3856092 +5 + chr6 3893480 3893542 chr6,3893465,3893893,-,LTR12B,LTR,ERV1,-228,439,1,3893237,3893893 -1 - chr6 3893840 3893893 chr6,3893465,3893893,-,LTR12B,LTR,ERV1,-228,439,1,3893237,3893893 -1 - chr6 3893864 3893901 chr6,3893864,3893901,-,LTR12B,LTR,ERV1,-856,398,362,3893008,3894262 -6 - chr6 3905039 3905147 chr6,3905039,3905147,-,AluJo,SINE,Alu,-191,121,1,3904848,3905147 +6 - chr6 3905160 3905532 chr6,3905160,3905532,-,L1ME3Cz,LINE,L1,0,997,610,3905160,3906141 +6 - chr6 3905862 3905918 chr6,3905862,3905918,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,57,0,3905862,3905918 -6 + chr6 3907235 3907992 chr6,3907235,3907992,+,MER4E,LTR,ERV1,1,766,0,3907235,3907992 -6 + chr6 3908395 3908661 chr6,3908395,3908661,+,L1ME3A,LINE,L1,5908,6173,0,3902488,3908661 -6 + chr6 3910651 3910799 chr6,3910651,3910799,+,MIRc,SINE,MIR,6,175,-93,3910646,3910892 -6 + chr6 3911704 3911727 chr6,3911704,3911727,+,(TC)n,Simple_repeat,Simple_repeat,1,24,0,3911704,3911727 -6 + chr6 3982673 3982683 chr6,3982475,3982683,+,MIR,SINE,MIR,24,250,-18,3982452,3982701 +1 + chr6 3983098 3983379 chr6,3983098,3983379,+,MARNA,DNA,TcMar-Mariner,191,465,-121,3982908,3983500 +6 + chr6 3983311 3983387 chr6,3983311,3983387,-,MARNA,DNA,TcMar-Mariner,-395,191,110,3982916,3983496 -6 - chr6 3983678 3984048 chr6,3983678,3984048,+,THE1B,LTR,ERVL-MaLR,1,364,0,3983678,3984048 +6 + chr6 4018918 4018961 chr6,4018918,4018961,+,L2b,LINE,L2,3332,3374,-1,4015587,4018962 +6 + chr6 4145537 4145881 chr6,4145448,4145881,-,MSTB1,LTR,ERVL-MaLR,0,432,3,4145448,4145883 -2 - chr6 4155481 4155519 chr6,4155416,4155519,-,L3,LINE,CR1,-12,4087,3990,4155404,4159508 -2 - chr6 4156572 4156680 chr6,4156572,4156680,+,L2c,LINE,L2,3279,3380,-7,4153294,4156687 +6 + chr6 4157047 4157385 chr6,4157047,4157477,-,MLT2D,LTR,ERVL,0,414,1,4157047,4157477 -5 - chr6 4186624 4186646 chr6,4186418,4186646,-,MLT1E,LTR,ERVL-MaLR,-2,651,400,4186416,4187045 +5 - chr6 4345743 4345806 chr6,4345522,4345957,-,MLT1F,LTR,ERVL-MaLR,-18,530,24,4345504,4345980 +5 - chr6 4346798 4346869 chr6,4346798,4346936,-,MIRb,SINE,MIR,-81,187,39,4346717,4346974 +2 - chr6 4491807 4491870 chr6,4491736,4491870,-,MLT1L,LTR,ERVL-MaLR,-49,561,413,4491687,4492282 -1 - chr6 4494027 4494108 chr6,4494027,4494108,+,MIRc,SINE,MIR,48,133,-135,4493980,4494243 +6 + chr6 4494108 4494476 chr6,4494108,4494476,-,MLT1J,LTR,ERVL-MaLR,0,512,108,4494108,4494583 -6 - chr6 4494628 4494707 chr6,4494628,4494707,-,L2a,LINE,L2,0,3426,3347,4494628,4498053 -6 - chr6 4494959 4495255 chr6,4494959,4495255,+,AluSc,SINE,Alu,1,305,-4,4494959,4495259 +6 + chr6 4495458 4495769 chr6,4495458,4495844,+,L1ME4c,LINE,L1,257,642,-188,4495202,4496032 +5 + chr6 4599450 4599491 chr6,4599450,4599491,+,(TTTGTTT)n,Simple_repeat,Simple_repeat,1,44,0,4599450,4599491 -6 + chr6 4599495 4599615 chr6,4599495,4599801,-,AluSz,SINE,Alu,-8,304,1,4599487,4599801 +2 - chr6 4611196 4611241 chr6,4611196,4611241,+,GA-rich,Low_complexity,Low_complexity,1,45,0,4611196,4611241 +6 + chr6 5030817 5030921 chr6,5030817,5030921,+,MER3,DNA,hAT-Charlie,1,106,-103,5030817,5031024 +6 + chr6 5031959 5032005 chr6,5031959,5032005,+,(TTTCTAC)n,Simple_repeat,Simple_repeat,1,47,0,5031959,5032005 -6 + chr6 5032374 5032453 chr6,5032374,5032453,-,L1ME1,LINE,L1,0,6179,6090,5032374,5038542 +6 - chr6 5032572 5032665 chr6,5032572,5032665,-,MamRep434,DNA,TcMar-Tigger,0,426,326,5032572,5032990 +6 - chr6 5032705 5032815 chr6,5032705,5032815,+,MIR3,SINE,MIR,97,196,-12,5032609,5032827 -6 + chr6 5032867 5032953 chr6,5032867,5032953,+,(TCC)n,Simple_repeat,Simple_repeat,1,88,0,5032867,5032953 -6 + chr6 5033244 5033416 chr6,5033244,5033416,-,MIRc,SINE,MIR,-69,193,4,5033175,5033419 +6 - chr6 5033516 5033732 chr6,5033516,5033732,+,L2c,LINE,L2,2660,2883,-536,5030857,5034268 -6 + chr6 5033777 5034353 chr6,5033777,5034353,+,Tigger17c,DNA,TcMar-Tigger,1,600,-588,5033777,5034941 -6 + chr6 5034353 5034682 chr6,5034353,5034750,+,MSTB1,LTR,ERVL-MaLR,1,413,-19,5034353,5034769 -2 + chr6 5042506 5043237 chr6,5042338,5043237,+,HERVL74-int,LTR,ERVL,4615,5261,-424,5037724,5043661 +5 + chr6 5043267 5043449 chr6,5043267,5043483,+,HERVL74-int,LTR,ERVL,5376,5595,-90,5037892,5043573 +5 + chr6 5054202 5054422 chr6,5054202,5054422,-,MIRb,SINE,MIR,-12,256,22,5054190,5054443 +6 - chr6 5451989 5452048 chr6,5451989,5452048,+,L2c,LINE,L2,3263,3322,-65,5448727,5452113 -6 + chr6 5452551 5452651 chr6,5452551,5452651,+,L2b,LINE,L2,3263,3368,-7,5449289,5452658 -6 + chr6 5664993 5665090 chr6,5664993,5665090,+,L3,LINE,CR1,3800,3908,-191,5661194,5665281 -6 + chr6 5694882 5695008 chr6,5694721,5695022,+,AluJr,SINE,Alu,1,295,-17,5694721,5695039 -3 + chr6 5852063 5852136 chr6,5851847,5852192,+,MLT1J,LTR,ERVL-MaLR,1,373,-139,5851847,5852331 +3 + chr6 5870173 5870220 chr6,5870173,5870248,-,L1ME3E,LINE,L1,-384,5858,5784,5869789,5876031 -5 - chr6 6348611 6348709 chr6,6348017,6348709,+,MamGypsy2-I,LTR,Gypsy,3102,3816,-350,6344916,6349059 -4 + chr6 6360591 6360666 chr6,6360175,6360666,+,L1ME3G,LINE,L1,12,564,-360,6360164,6361026 -5 + chr6 6361985 6362091 chr6,6361985,6362091,+,MamRTE1,LINE,RTE-BovB,3634,3761,-51,6358352,6362142 -6 + chr6 6366181 6366296 chr6,6366181,6366296,-,LTR88c,LTR,Gypsy?,-746,116,1,6365435,6366296 +6 - chr6 6475306 6475412 chr6,6474905,6475412,-,MER4A1,LTR,ERV1,0,472,1,6474905,6475412 +5 - chr6 6475483 6475758 chr6,6475483,6475915,-,MLT1C,LTR,ERVL-MaLR,0,467,1,6475483,6475915 +2 - chr6 6564295 6564388 chr6,6564213,6564594,-,THE1D,LTR,ERVL-MaLR,0,381,1,6564213,6564594 +3 - chr6 6680815 6681378 chr6,6680815,6681378,-,Kanga1d,DNA,TcMar-Tc2,0,609,4,6680815,6681381 +6 - chr6 6681657 6681866 chr6,6681657,6681866,+,MIRb,SINE,MIR,5,214,-54,6681653,6681920 -6 + chr6 6682513 6682628 chr6,6682513,6682628,+,MIRb,SINE,MIR,76,194,-74,6682438,6682702 -6 + chr6 6682800 6683103 chr6,6682800,6683103,+,AluSq,SINE,Alu,1,303,-10,6682800,6683113 -6 + chr6 6683119 6683285 chr6,6683119,6683285,+,(TC)n,Simple_repeat,Simple_repeat,1,172,0,6683119,6683285 -6 + chr6 6683454 6683633 chr6,6683454,6683704,-,LTR16E2,LTR,ERVL,0,568,283,6683454,6683986 +1 - chr6 6685148 6685349 chr6,6684370,6685349,+,Tigger6a,DNA,TcMar-Tigger,1,1078,-5,6684370,6685354 +1 + chr6 6685521 6685595 chr6,6685521,6685595,-,MIRb,SINE,MIR,-5,263,194,6685516,6685788 -6 - chr6 6686244 6686631 chr6,6686244,6686631,-,MLT1B,LTR,ERVL-MaLR,0,390,1,6686244,6686631 -6 - chr6 6686708 6686892 chr6,6686708,6686892,+,L2,LINE,L2,2280,2464,-955,6684429,6687847 +6 + chr6 6692744 6692790 chr6,6692628,6692790,+,FordPrefect,DNA,hAT-Tip100,1470,1643,-40,6691159,6692830 -5 + chr6 6710872 6711002 chr6,6710804,6711035,-,MER92-int,LTR,ERV1,-4980,238,10,6705824,6711044 +1 - chr6 6758332 6758444 chr6,6758332,6758627,+,AluJo,SINE,Alu,1,293,-19,6758332,6758646 -2 + chr6 6901489 6901703 chr6,6901489,6901703,-,L2b,LINE,L2,-2,3373,3151,6901487,6904853 +6 - chr6 6918510 6918521 chr6,6918469,6918521,+,L2c,LINE,L2,3281,3332,-55,6915189,6918576 -4 + chr6 6993191 6993226 chr6,6993113,6993226,-,L1MC4,LINE,L1,-576,7466,7351,6992537,7000576 -1 - chr6 6993274 6993372 chr6,6993274,6993583,+,AluSc8,SINE,Alu,2,309,-2,6993273,6993585 +4 + chr6 6995050 6995153 chr6,6994883,6995206,+,MLT1I,LTR,ERVL-MaLR,72,410,-1,6994812,6995207 +3 + chr6 6995324 6995379 chr6,6995208,6995379,-,MIR,SINE,MIR,-16,246,79,6995192,6995457 -2 - chr6 7183083 7183138 chr6,7182938,7183138,-,L1M5,LINE,L1,-388,5736,5505,7182550,7188642 -1 - chr6 7183343 7183370 chr6,7183343,7183370,+,(ATCC)n,Simple_repeat,Simple_repeat,1,27,0,7183343,7183370 +6 + chr6 7183374 7183473 chr6,7183374,7183473,-,L2a,LINE,L2,-7,3419,3319,7183367,7186791 -6 - chr6 7184508 7184552 chr6,7184434,7184552,-,AluJo,SINE,Alu,-188,124,7,7184246,7184558 -2 - chr6 8652137 8652390 chr6,8652094,8652454,+,MLT1A,LTR,ERVL-MaLR,1,374,0,8652094,8652454 +1 + chr6 8653772 8653831 chr6,8653772,8653831,+,A-rich,Low_complexity,Low_complexity,1,59,0,8653772,8653831 +6 + chr6 9161723 9161777 chr6,9161590,9162051,+,L1ME1,LINE,L1,92,581,-5842,9161499,9167893 -1 + chr6 10433191 10433253 chr6,10433191,10433669,-,L2a,LINE,L2,0,3426,2889,10433191,10436557 +2 - chr6 10434316 10434400 chr6,10434122,10434400,-,L2a,LINE,L2,-1109,2310,2014,10433013,10436413 -1 - chr6 10434248 10434400 chr6,10434122,10434400,-,L2a,LINE,L2,-1109,2310,2014,10433013,10436413 +1 - chr6 10434400 10434495 chr6,10434400,10434600,+,MIRb,SINE,MIR,2,208,-60,10434399,10434660 -1 + chr6 10434513 10434600 chr6,10434400,10434600,+,MIRb,SINE,MIR,2,208,-60,10434399,10434660 -1 + chr6 10434600 10434874 chr6,10434600,10434992,-,MLT1B,LTR,ERVL-MaLR,-1,389,1,10434599,10434992 +1 - chr6 10456504 10456781 chr6,10456504,10456791,+,AluJr,SINE,Alu,2,296,-16,10456503,10456807 +5 + chr6 10511183 10511295 chr6,10511183,10511513,-,MER58B,DNA,hAT-Charlie,-3,338,1,10511180,10511513 +2 - chr6 10513584 10513736 chr6,10513584,10513736,-,MamRTE1,LINE,RTE-BovB,-4,3808,3643,10513580,10517378 +6 - chr6 10743324 10743404 chr6,10743217,10743404,+,LTR102_Mam,LTR,ERVL,1,212,-639,10743217,10744043 -5 + chr6 10743545 10744032 chr6,10743545,10744032,+,LTR102_Mam,LTR,ERVL,355,851,0,10743191,10744032 -6 + chr6 10746953 10747012 chr6,10746949,10747012,-,L1ME3Cz,LINE,L1,-359,638,576,10746590,10747587 +5 - chr6 10882320 10882417 chr6,10882273,10882573,-,AluSg,SINE,Alu,-3,307,1,10882270,10882573 -3 - chr6 10884212 10884349 chr6,10884212,10884515,+,AluJb,SINE,Alu,5,311,-1,10884208,10884516 +5 + chr6 11047909 11047999 chr6,11047908,11048028,-,MIRc,SINE,MIR,-123,145,2,11047785,11048029 -3 - chr6 11049109 11049219 chr6,11049089,11049932,-,L1PB4,LINE,L1,-7,6165,5345,11049082,11055276 -3 - chr6 11077695 11078085 chr6,11077695,11078085,-,LTR16A,LTR,ERVL,0,451,1,11077695,11078085 -5 - chr6 11078085 11078114 chr6,11078085,11078114,+,Charlie7,DNA,hAT-Charlie,1633,1657,-955,11076453,11079069 +6 + chr6 11078114 11078226 chr6,11078114,11078466,+,MLT1A0,LTR,ERVL-MaLR,3,365,0,11078112,11078466 +5 + chr6 11417350 11417550 chr6,11416082,11417550,-,LTR12C,LTR,ERV1,-1,1578,2,11416081,11417551 -1 - chr6 11417550 11417579 chr6,11417550,11418875,-,L1MEi,LINE,L1,-814,1398,15,11416736,11418889 -4 - chr6 11487226 11487276 chr6,11487111,11487276,+,AluJo,SINE,Alu,136,278,-34,11486976,11487310 +1 + chr6 11487276 11487303 chr6,11487276,11487303,+,(GTTT)n,Simple_repeat,Simple_repeat,1,27,0,11487276,11487303 +6 + chr6 11490313 11490443 chr6,11489987,11490443,-,LTR16C,LTR,ERVL,-4,485,3,11489983,11490445 -2 - chr6 11490443 11490464 chr6,11490443,11490562,+,L2c,LINE,L2,3278,3387,0,11487166,11490562 +4 + chr6 11503511 11503663 chr6,11503507,11503671,-,U1,snRNA,snRNA,-1,164,1,11503506,11503671 -3 - chr6 11990409 11990520 chr6,11990409,11990524,+,MIR3,SINE,MIR,75,195,-13,11990335,11990537 -2 + chr6 12583097 12583189 chr6,12583097,12583189,+,MIRc,SINE,MIR,22,123,-145,12583076,12583334 -6 + chr6 12583237 12583507 chr6,12583237,12583527,+,AluSc,SINE,Alu,1,294,-15,12583237,12583542 -2 + chr6 13264861 13265021 chr6,13264740,13265049,+,AluJr,SINE,Alu,1,309,-3,13264740,13265052 -5 + chr6 13267509 13267632 chr6,13267509,13267632,+,Tigger14a,DNA,TcMar-Tigger,106,229,-95,13267404,13267727 -6 + chr6 13280736 13280793 chr6,13280736,13280793,+,Alu,SINE,Alu,1,57,-254,13280736,13281047 -6 + chr6 13281429 13281553 chr6,13281271,13281582,+,AluSz,SINE,Alu,1,308,-4,13281271,13281586 -3 + chr6 13290444 13290484 chr6,13290444,13290484,+,(A)n,Simple_repeat,Simple_repeat,1,40,0,13290444,13290484 -6 + chr6 13614111 13614499 chr6,13614110,13614499,-,L2c,LINE,L2,-6,3381,2956,13614104,13617454 +5 - chr6 13825442 13825631 chr6,13825442,13825631,+,L1ME4a,LINE,L1,5877,6089,-35,13819566,13825666 +6 + chr6 13825803 13825976 chr6,13825803,13825976,+,MER33,DNA,hAT-Charlie,38,222,-102,13825766,13826078 +6 + chr6 13825976 13826336 chr6,13825976,13826336,-,MSTD,LTR,ERVL-MaLR,-2,394,3,13825974,13826338 -6 - chr6 13826336 13826453 chr6,13826336,13826453,+,MER33,DNA,hAT-Charlie,223,324,0,13826114,13826453 +6 + chr6 14004944 14004980 chr6,14004944,14005053,+,L1ME4a,LINE,L1,5997,6109,-15,13998948,14005068 +4 + chr6 14229775 14229968 chr6,14229728,14229968,-,LTR33,LTR,ERVL,-2,513,274,14229726,14230241 +5 - chr6 14280127 14280455 chr6,14280080,14280455,-,MLT1A,LTR,ERVL-MaLR,0,374,1,14280080,14280455 +5 - chr6 14281609 14281713 chr6,14281609,14281713,+,MIR3,SINE,MIR,64,181,-27,14281546,14281740 -6 + chr6 14281729 14281902 chr6,14281729,14281902,+,UCON105,Unknown,Unknown,80,262,-11,14281650,14281913 -6 + chr6 14391821 14391871 chr6,14391758,14391891,+,MIR3,SINE,MIR,11,153,-55,14391748,14391946 -3 + chr6 14392304 14392382 chr6,14392268,14392399,+,MIRb,SINE,MIR,20,156,-112,14392249,14392511 -3 + chr6 14393204 14393283 chr6,14393197,14393283,+,MIRb,SINE,MIR,161,253,-15,14393037,14393298 -4 + chr6 14395053 14395226 chr6,14394458,14395226,+,MER21A,LTR,ERVL,1,931,0,14394458,14395226 +2 + chr6 14976852 14977020 chr6,14976852,14977020,-,MIRb,SINE,MIR,-15,253,52,14976837,14977071 +6 - chr6 14977023 14977318 chr6,14977023,14977371,-,MLT1C,LTR,ERVL-MaLR,0,467,116,14977023,14977486 +2 - chr6 15079817 15079831 chr6,15079817,15080000,+,LTR88b,LTR,Gypsy?,286,473,-364,15079532,15080364 -2 + chr6 15243941 15244161 chr6,15243941,15244161,-,MIRc,SINE,MIR,-16,252,11,15243925,15244171 +6 - chr6 16764358 16764515 chr6,16764358,16764515,+,MER5A1,DNA,hAT-Charlie,7,166,0,16764352,16764515 +6 + chr6 16765608 16765705 chr6,16765608,16765705,-,L2c,LINE,L2,0,3387,3286,16765608,16768990 -6 - chr6 16766030 16766163 chr6,16766030,16766163,-,MER131,DNA?,DNA?,-42,173,39,16765988,16766201 -6 - chr6 16766605 16766883 chr6,16766605,16766892,+,MER33,DNA,hAT-Charlie,133,239,-85,16766473,16766977 +5 + chr6 19640481 19640583 chr6,19639756,19640604,+,L2c,LINE,L2,2440,3362,-25,19637317,19640629 -3 + chr6 19730640 19730674 chr6,19730640,19730674,-,L3,LINE,CR1,-250,3849,3816,19730390,19734489 +6 - chr6 19730738 19730779 chr6,19730738,19730886,+,MIR,SINE,MIR,92,244,-18,19730647,19730904 -2 + chr6 19802164 19802772 chr6,19801719,19802772,+,L1MD2,LINE,L1,5636,6735,-15,19796084,19802787 -5 + chr6 19802772 19802906 chr6,19802772,19802906,+,MER5B,DNA,hAT-Charlie,48,178,0,19802725,19802906 -6 + chr6 19838818 19838861 chr6,19838789,19838861,+,AmnSINE2,SINE,tRNA-Deu,24,98,-260,19838766,19839121 -4 + chr6 20317559 20317739 chr6,20317559,20317783,+,MLT1J,LTR,ERVL-MaLR,299,509,-3,20317261,20317786 +5 + chr6 20437821 20437872 chr6,20437767,20437872,-,MIR3,SINE,MIR,-30,178,65,20437737,20437936 -1 - chr6 20756103 20756201 chr6,20755145,20756521,+,L2c,LINE,L2,694,2142,-1277,20754452,20757798 -5 + chr6 20800640 20800694 chr6,20800640,20800913,-,AluJo,SINE,Alu,-30,282,1,20800610,20800913 +1 - chr6 21742982 21743037 chr6,21742982,21743037,+,L3b,LINE,CR1,5033,5087,-145,21737950,21743182 +6 + chr6 21758393 21758508 chr6,21758200,21758508,-,AluY,SINE,Alu,-6,305,1,21758194,21758508 -2 - chr6 21909775 21909802 chr6,21909775,21909802,+,(GTT)n,Simple_repeat,Simple_repeat,1,27,0,21909775,21909802 +6 + chr6 21909802 21909837 chr6,21909802,21910093,-,AluSq,SINE,Alu,-29,284,2,21909773,21910094 -5 - chr6 22020364 22020423 chr6,22020364,22020423,-,L3,LINE,CR1,-863,3236,3177,22019501,22023599 -6 - chr6 22110747 22110837 chr6,22110645,22110837,-,MIRc,SINE,MIR,-27,241,30,22110618,22110866 -2 - chr6 22113917 22114037 chr6,22113882,22114194,-,AluJb,SINE,Alu,-4,308,1,22113878,22114194 -3 - chr6 22134957 22135403 chr6,22134632,22135403,+,L1MC3,LINE,L1,6961,7765,-20,22127672,22135423 -5 + chr6 22136556 22136669 chr6,22136556,22136753,+,MIRb,SINE,MIR,26,230,-38,22136531,22136791 -2 + chr6 22149018 22149055 chr6,22149018,22149055,+,(AATTTAA)n,Simple_repeat,Simple_repeat,1,37,0,22149018,22149055 +6 + chr6 22173998 22174062 chr6,22172656,22174159,+,THE1D-int,LTR,ERVL-MaLR,4,1580,0,22172653,22174159 +3 + chr6 22191567 22191656 chr6,22191486,22191937,-,MLT1C,LTR,ERVL-MaLR,0,467,6,22191486,22191942 -3 - chr6 22194663 22194948 chr6,22194663,22194948,+,AluJb,SINE,Alu,9,297,-15,22194655,22194963 +6 + chr6 22195535 22195744 chr6,22195535,22195744,+,MER58A,DNA,hAT-Charlie,4,217,-7,22195532,22195751 +6 + chr6 22196274 22196571 chr6,22196274,22196571,+,AluSx,SINE,Alu,11,302,-10,22196264,22196581 +6 + chr6 22220781 22220802 chr6,22220777,22220802,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,22220777,22220802 +1 + chr6 22220802 22220922 chr6,22220802,22220922,-,AluSq10,SINE,Alu,-178,135,1,22220624,22220922 -6 - chr6 22221765 22221879 chr6,22221765,22221879,-,MER5A1,DNA,hAT-Charlie,-52,114,1,22221713,22221879 -6 - chr6 22221897 22222186 chr6,22221897,22222186,+,MamRep1151,LTR?,LTR?,187,481,-228,22221711,22222414 +6 + chr6 22222194 22222395 chr6,22222194,22222451,+,MamRep1151,LTR?,LTR?,449,709,0,22221746,22222451 +5 + chr6 22317716 22317798 chr6,22317601,22318955,-,LTR12C,LTR,ERV1,0,1579,3,22317601,22318957 -5 - chr6 22589195 22589231 chr6,22589195,22589231,+,(TTTTA)n,Simple_repeat,Simple_repeat,1,36,0,22589195,22589231 -6 + chr6 22589511 22589605 chr6,22589511,22589760,+,MIR,SINE,MIR,42,262,0,22589470,22589760 -2 + chr6 22592434 22592571 chr6,22591757,22592571,+,LTR82A,LTR,ERVL,1,872,0,22591757,22592571 -4 + chr6 22744395 22745068 chr6,22744119,22745736,+,L1MB5,LINE,L1,4503,6166,-8,22739617,22745744 -5 + chr6 23031680 23031749 chr6,23031576,23031749,-,MER5A,DNA,hAT-Charlie,-6,183,1,23031570,23031749 +4 - chr6 24706747 24706924 chr6,24706629,24706924,+,AluJb,SINE,Alu,1,297,-15,24706629,24706939 +1 + chr6 24751814 24751921 chr6,24751814,24752055,-,L1MC5a,LINE,L1,-49,2728,2497,24751765,24754551 -5 - chr6 25015800 25015823 chr6,25015800,25015823,+,(GGA)n,Simple_repeat,Simple_repeat,1,23,0,25015800,25015823 -6 + chr6 25053627 25053854 chr6,25053236,25054051,-,LTR1E,LTR,ERV1,-75,899,1,25053161,25054051 +5 - chr6 25054000 25054045 chr6,25053236,25054051,-,LTR1E,LTR,ERV1,-75,899,1,25053161,25054051 +5 - chr6 25061625 25061651 chr6,25061294,25061651,+,LTR16A2,LTR,ERVL,128,495,0,25061167,25061651 -5 + chr6 25063480 25063507 chr6,25063011,25063533,-,MLT1K,LTR,ERVL-MaLR,0,595,1,25063011,25063533 +1 - chr6 25245356 25245465 chr6,25244831,25245889,-,L1MEg2,LINE,L1,-5458,994,26,25239373,25245914 +5 - chr6 25255189 25255306 chr6,25255052,25255327,+,AluSz,SINE,Alu,22,296,-16,25255031,25255343 -3 + chr6 25260550 25260576 chr6,25260550,25260596,+,MIR,SINE,MIR,107,151,-111,25260444,25260707 -2 + chr6 25261124 25261188 chr6,25261017,25261188,+,L1MEc,LINE,L1,702,869,-5531,25260316,25266719 -4 + chr6 25983812 25983849 chr6,25983731,25983849,+,L2a,LINE,L2,3307,3425,-1,25980425,25983850 -5 + chr6 25990761 25990799 chr6,25990598,25990799,-,Charlie5,DNA,hAT-Charlie,-2132,492,367,25988466,25991165 -1 - chr6 25990799 25990837 chr6,25990799,25990837,+,(TTTTTAA)n,Simple_repeat,Simple_repeat,1,38,0,25990799,25990837 +6 + chr6 25991083 25991178 chr6,25991083,25991178,+,L2c,LINE,L2,3253,3344,-43,25987831,25991221 +6 + chr6 25997903 25998018 chr6,25997787,25998018,+,MLT1J1,LTR,ERVL-MaLR,96,329,-119,25997692,25998137 +2 + chr6 25998438 25998491 chr6,25998438,25998491,-,MIRb,SINE,MIR,-114,154,102,25998324,25998592 -6 - chr6 25998495 25998557 chr6,25998495,25998557,+,L2b,LINE,L2,3314,3375,0,25995182,25998557 +6 + chr6 25998693 25999001 chr6,25998693,25999001,-,AluJb,SINE,Alu,-14,298,2,25998679,25999002 -6 - chr6 25999230 26000000 chr6,25999230,26000000,+,LTR5_Hs,LTR,ERVK,1,771,-197,25999230,26000197 +6 + chr6 26000000 26000197 chr6,26000000,26000197,+,LTR5,LTR,ERVK,773,969,0,25999228,26000197 +6 + chr6 26000286 26000480 chr6,26000286,26000480,-,hAT-N1_Mam,DNA,hAT-Tip100?,-39,301,106,26000247,26000585 -6 - chr6 26001082 26001364 chr6,26001082,26001364,-,AluSz,SINE,Alu,-28,284,1,26001054,26001364 -6 - chr6 26013241 26013519 chr6,26012933,26013519,+,L1ME3A,LINE,L1,5559,6171,-2,26007375,26013521 +1 + chr6 26523955 26523979 chr6,26523955,26523979,+,(GAAGA)n,Simple_repeat,Simple_repeat,1,26,0,26523955,26523979 +6 + chr6 26525357 26525657 chr6,26525357,26525657,+,AluSc,SINE,Alu,1,300,-9,26525357,26525666 +6 + chr6 26526299 26526579 chr6,26526299,26526592,+,AluSc,SINE,Alu,1,292,-17,26526299,26526609 +5 + chr6 26603048 26603109 chr6,26603048,26603109,-,tRNA-Asn-AAC,tRNA,tRNA,-15,62,2,26603033,26603110 -6 - chr6 26603274 26603553 chr6,26603274,26603553,+,AluSg,SINE,Alu,1,281,-29,26603274,26603582 +1 + chr6 26603553 26603586 chr6,26603553,26603586,+,(AAC)n,Simple_repeat,Simple_repeat,1,34,0,26603553,26603586 +6 + chr6 26604337 26604591 chr6,26604337,26604591,-,L2a,LINE,L2,-11,3415,3147,26604326,26607737 -6 - chr6 26604865 26604938 chr6,26604865,26604938,+,tRNA-Arg-CGY_,tRNA,tRNA,1,73,-3,26604865,26604941 +6 + chr6 26605748 26605883 chr6,26605748,26605883,+,AluJr,SINE,Alu,2,133,-179,26605747,26606062 +6 + chr6 26686304 26686455 chr6,26686304,26686455,+,MIRc,SINE,MIR,3,153,-115,26686302,26686570 +6 + chr6 26686881 26686920 chr6,26686881,26686920,+,(AC)n,Simple_repeat,Simple_repeat,1,39,0,26686881,26686920 +6 + chr6 26687256 26687329 chr6,26687256,26687329,+,tRNA-Ala-GCY,tRNA,tRNA,1,73,-3,26687256,26687332 +6 + chr6 26687512 26687658 chr6,26687512,26687658,+,L1MD2,LINE,L1,515,666,-5881,26686998,26693539 +6 + chr6 26956992 26957143 chr6,26956055,26957143,-,LTR12E,LTR,ERV1,-155,1167,1,26955900,26957143 -1 - chr6 26968458 26968522 chr6,26968377,26968859,-,MLT1C,LTR,ERVL-MaLR,0,467,1,26968377,26968859 -3 - chr6 26969176 26969338 chr6,26969176,26969338,-,L1M5,LINE,L1,-2163,3983,3816,26967013,26973153 -6 - chr6 26969650 26969716 chr6,26969650,26969716,+,A-rich,Low_complexity,Low_complexity,1,67,0,26969650,26969716 +6 + chr6 26970138 26970236 chr6,26970138,26970236,+,(AATTAA)n,Simple_repeat,Simple_repeat,1,104,0,26970138,26970236 +6 + chr6 26970306 26970356 chr6,26970306,26970356,+,(ATATTTT)n,Simple_repeat,Simple_repeat,1,51,0,26970306,26970356 +6 + chr6 26970736 26970794 chr6,26970736,26970794,+,(TATAGAA)n,Simple_repeat,Simple_repeat,1,61,0,26970736,26970794 +6 + chr6 26971284 26971380 chr6,26971284,26971380,-,MER5A1,DNA,hAT-Charlie,0,166,59,26971284,26971438 -6 - chr6 26972196 26972551 chr6,26972196,26972551,+,MER2,DNA,TcMar-Tigger,1,345,0,26972196,26972551 +6 + chr6 26972883 26972910 chr6,26972883,26972910,+,(TATC)n,Simple_repeat,Simple_repeat,1,27,0,26972883,26972910 +6 + chr6 26973201 26973333 chr6,26973201,26973333,+,L2a,LINE,L2,3253,3393,-33,26969949,26973366 +6 + chr6 26973612 26973651 chr6,26973612,26973651,+,A-rich,Low_complexity,Low_complexity,1,41,0,26973612,26973651 +6 + chr6 27023254 27023601 chr6,27023027,27023601,+,MLT1G1,LTR,ERVL-MaLR,1,577,-2,27023027,27023603 +2 + chr6 27023609 27023798 chr6,27023609,27023798,+,MLT1H,LTR,ERVL-MaLR,115,291,-258,27023495,27024056 +6 + chr6 27023841 27023924 chr6,27023841,27023968,+,MLT1H,LTR,ERVL-MaLR,421,543,-6,27023421,27023974 +5 + chr6 27122800 27123053 chr6,27122800,27123053,+,AluJr,SINE,Alu,24,282,-30,27122777,27123083 -6 + chr6 27123194 27123221 chr6,27123194,27123489,+,AluSz,SINE,Alu,1,307,-5,27123194,27123494 -1 + chr6 27404078 27404319 chr6,27404078,27404319,-,L4_B_Mam,LINE,RTE-X,-99,4842,4577,27403979,27408895 +6 - chr6 27404545 27404734 chr6,27404545,27404734,+,Tigger3b,DNA,TcMar-Tigger,1,216,-1015,27404545,27405749 -6 + chr6 27404734 27405026 chr6,27404734,27405026,+,AluSx,SINE,Alu,1,294,-18,27404734,27405044 -6 + chr6 27405026 27405354 chr6,27405026,27405354,+,Tigger3b,DNA,TcMar-Tigger,217,499,-732,27404810,27406086 -6 + chr6 27405362 27406008 chr6,27405362,27406008,-,HERVL18-int,LTR,ERVL,-2659,3388,2718,27402703,27408725 +6 - chr6 27406005 27406279 chr6,27406005,27406279,-,HERVL18-int,LTR,ERVL,-3595,2452,2119,27402410,27408397 +6 - chr6 27406278 27406626 chr6,27406278,27406626,-,HERVL18-int,LTR,ERVL,-4237,1810,1401,27402041,27408026 +6 - chr6 27406668 27406837 chr6,27406668,27406837,-,HERVL18-int,LTR,ERVL,-5382,665,494,27401286,27407330 +6 - chr6 27406822 27406964 chr6,27406822,27407107,-,HERVL18-int,LTR,ERVL,-5744,303,19,27401078,27407125 +1 - chr6 28080626 28080692 chr6,28080373,28080692,-,AluSc8,SINE,Alu,-8,303,1,28080365,28080692 +4 - chr6 28121941 28122024 chr6,28121941,28122024,-,L1ME4b,LINE,L1,-451,441,357,28121490,28122380 +6 - chr6 28122221 28122646 chr6,28122221,28122646,-,LTR7C,LTR,ERV1,0,471,1,28122221,28122646 +6 - chr6 28122668 28122748 chr6,28122668,28122748,-,L1ME4b,LINE,L1,-814,78,1,28121854,28122748 +6 - chr6 28122773 28122807 chr6,28122773,28122807,+,(TTTTAC)n,Simple_repeat,Simple_repeat,1,35,0,28122773,28122807 -6 + chr6 28122923 28123062 chr6,28122923,28123062,+,L2a,LINE,L2,2727,2849,-570,28120197,28123632 -6 + chr6 28123062 28123211 chr6,28123062,28123232,+,FRAM,SINE,Alu,1,167,-9,28123062,28123241 -2 + chr6 28125801 28125819 chr6,28125801,28126203,+,L3,LINE,CR1,3624,4020,-79,28122178,28126282 -2 + chr6 28137528 28137717 chr6,28137528,28137717,+,MIRb,SINE,MIR,27,209,-59,28137502,28137776 +6 + chr6 28138647 28139084 chr6,28138647,28139084,-,LTR40a,LTR,ERVL,-12,507,1,28138635,28139084 -6 - chr6 28139491 28139678 chr6,28139491,28139870,-,L1M5,LINE,L1,-975,5469,5085,28138516,28144954 -5 - chr6 28170845 28170959 chr6,28170384,28170959,-,L1M5,LINE,L1,-847,5299,4707,28169537,28175665 -1 - chr6 28170959 28171604 chr6,28170959,28171604,+,MER76,LTR,ERVL,1,691,0,28170959,28171604 +6 + chr6 28171604 28172173 chr6,28171604,28172173,-,L1M5,LINE,L1,-1440,4706,4081,28170164,28176253 -6 - chr6 28172386 28172460 chr6,28172386,28172460,+,MER2,DNA,TcMar-Tigger,2,79,-266,28172385,28172726 +6 + chr6 28172460 28172497 chr6,28172460,28172497,+,(AATA)n,Simple_repeat,Simple_repeat,1,38,0,28172460,28172497 +6 + chr6 28172508 28172521 chr6,28172508,28172631,-,Tigger17c,DNA,TcMar-Tigger,-399,789,654,28172109,28173284 -5 - chr6 28587714 28587732 chr6,28587714,28587857,-,MIR1_Amn,SINE,MIR,-21,187,32,28587693,28587888 -4 - chr6 28589229 28589292 chr6,28589182,28589292,-,L3b,LINE,CR1,-531,4701,4593,28588651,28593884 -2 - chr6 28589378 28589450 chr6,28589378,28589450,+,tRNA-Gln-CAA,tRNA,tRNA,1,72,-3,28589378,28589453 +6 + chr6 28589831 28589873 chr6,28589831,28589873,+,(T)n,Simple_repeat,Simple_repeat,1,42,0,28589831,28589873 +6 + chr6 28591388 28591747 chr6,28591388,28591777,+,MER31B,LTR,ERV1,3,514,0,28591386,28591777 +5 + chr6 28837869 28838120 chr6,28837819,28838120,+,AluY,SINE,Alu,1,306,-5,28837819,28838125 -5 + chr6 28860240 28860357 chr6,28860240,28860357,+,MER3,DNA,hAT-Charlie,2,117,-92,28860239,28860449 -6 + chr6 28860574 28861258 chr6,28860574,28861258,+,LTR8,LTR,ERV1,1,691,0,28860574,28861258 -5 + chr6 28896571 28896591 chr6,28896571,28896591,+,(T)n,Simple_repeat,Simple_repeat,1,20,0,28896571,28896591 +6 + chr6 28897262 28897309 chr6,28897262,28897309,+,L2a,LINE,L2,3366,3408,-18,28893897,28897327 +6 + chr6 28986463 28986506 chr6,28986463,28986596,+,L2a,LINE,L2,3247,3426,0,28983217,28986596 +4 + chr6 28987058 28987351 chr6,28987058,28987351,+,AluSx4,SINE,Alu,1,286,-24,28987058,28987375 +6 + chr6 29065121 29065172 chr6,29065091,29065239,-,MLT1A0,LTR,ERVL-MaLR,-51,314,156,29065040,29065394 -3 - chr6 29128657 29128908 chr6,29127369,29129270,+,L1MC3,LINE,L1,5468,7373,-412,29121902,29129682 +5 + chr6 29497509 29497539 chr6,29497305,29497670,+,THE1D,LTR,ERVL-MaLR,1,378,-3,29497305,29497673 +1 + chr6 29531262 29531291 chr6,29531262,29531291,+,(TCC)n,Simple_repeat,Simple_repeat,1,29,0,29531262,29531291 +6 + chr6 29735028 29735076 chr6,29734640,29735076,-,L1MB5,LINE,L1,0,6672,6241,29734640,29741316 +5 - chr6 29735157 29735181 chr6,29735157,29735181,+,(TA)n,Simple_repeat,Simple_repeat,1,21,0,29735157,29735181 -6 + chr6 29735181 29735207 chr6,29735181,29735207,+,(CA)n,Simple_repeat,Simple_repeat,1,26,0,29735181,29735207 -6 + chr6 29735207 29735391 chr6,29735207,29735391,+,(TA)n,Simple_repeat,Simple_repeat,2,171,0,29735206,29735391 -6 + chr6 29735394 29736055 chr6,29735394,29736055,-,L1MB5,LINE,L1,-5581,1936,1270,29729813,29737324 +6 - chr6 29736066 29736195 chr6,29736066,29736195,-,ERVL-E-int,LTR,ERVL,-1760,3907,3770,29734306,29739964 +6 - chr6 29736496 29736716 chr6,29736496,29736716,-,L1ME3A,LINE,L1,-19,6154,5932,29736477,29742647 +6 - chr6 29736741 29736820 chr6,29736741,29736988,-,L1ME3A,LINE,L1,-328,5845,5586,29736413,29742573 +2 - chr6 29738694 29738871 chr6,29738694,29738871,-,LTR84a,LTR,ERVL,0,757,581,29738694,29739451 +6 - chr6 29747149 29747425 chr6,29747149,29747456,+,AluY,SINE,Alu,2,309,-2,29747148,29747458 -2 + chr6 29975498 29975517 chr6,29975498,29975527,+,(GAGAG)n,Simple_repeat,Simple_repeat,1,30,0,29975498,29975527 +4 + chr6 29978234 29978389 chr6,29978234,29978389,+,FRAM,SINE,Alu,1,164,-12,29978234,29978401 +6 + chr6 30001011 30001856 chr6,30000984,30001856,+,ERV3-16A3_I-int,LTR,ERVL,2413,3276,-1950,29998572,30003806 -5 + chr6 30001856 30002732 chr6,30001856,30003060,+,ERV3-16A3_I-int,LTR,ERVL,3775,4972,-254,29998082,30003314 -2 + chr6 30003167 30003286 chr6,30003073,30003286,+,LTR16B2,LTR,ERVL,57,289,-191,30003017,30003477 -4 + chr6 30003251 30003368 chr6,30003251,30003448,+,MLT1F1,LTR,ERVL-MaLR,371,569,0,30002881,30003448 -2 + chr6 30010829 30011054 chr6,30010819,30011054,+,MER30,DNA,hAT-Charlie,1,230,0,30010819,30011054 -5 + chr6 30011054 30011803 chr6,30011054,30011803,-,L2a,LINE,L2,-124,3302,2486,30010930,30014288 +6 - chr6 30012016 30012399 chr6,30012016,30012399,+,L1MB4,LINE,L1,2211,2817,-12,30009806,30012411 -5 + chr6 30012480 30012638 chr6,30012480,30012638,-,AluJr4,SINE,Alu,-12,300,137,30012468,30012774 +6 - chr6 30013149 30013314 chr6,30013149,30013314,+,MER20,DNA,hAT-Charlie,32,217,-2,30013118,30013316 -6 + chr6 30013315 30013445 chr6,30013315,30013445,-,MIR,SINE,MIR,-91,171,22,30013224,30013466 +6 - chr6 30014944 30015432 chr6,30014944,30015432,+,L1MB4,LINE,L1,5077,5599,-2569,30009868,30018001 -6 + chr6 30015432 30015731 chr6,30015432,30015731,+,AluSc,SINE,Alu,1,297,-12,30015432,30015743 -6 + chr6 30015731 30016440 chr6,30015731,30016440,+,L1MB4,LINE,L1,5569,6353,0,30010163,30016440 -6 + chr6 30016584 30016920 chr6,30016584,30016920,-,MER4A1,LTR,ERV1,-115,357,1,30016469,30016920 +6 - chr6 30016939 30017078 chr6,30016939,30017078,+,L1MC5,LINE,L1,8663,8804,-500,30008277,30017578 -6 + chr6 30017173 30019413 chr6,30017173,30019413,+,ERVL47-int,LTR,ERVL,2944,5244,-2,30014230,30019415 -6 + chr6 30019415 30019843 chr6,30019415,30019843,+,LTR47B2,LTR,ERVL,1,434,0,30019415,30019843 -5 + chr6 30021087 30021188 chr6,30021087,30021188,+,L1MC5a,LINE,L1,2189,2288,-489,30018899,30021677 -6 + chr6 30021188 30021740 chr6,30021188,30021740,+,MER41D,LTR,ERV1,3,557,0,30021186,30021740 -6 + chr6 30021740 30021761 chr6,30021740,30022070,+,L1MC5a,LINE,L1,2289,2623,-154,30019452,30022224 -2 + chr6 30034908 30035110 chr6,30034865,30035742,-,HAL1,LINE,L1,-542,1965,972,30034323,30036713 +1 - chr6 30035430 30035742 chr6,30034865,30035742,-,HAL1,LINE,L1,-542,1965,972,30034323,30036713 +1 - chr6 30054601 30054879 chr6,30054402,30054879,+,L1ME3D,LINE,L1,5671,6232,-10,30048732,30054889 -5 + chr6 30055652 30055823 chr6,30055652,30055823,-,MER3,DNA,hAT-Charlie,0,209,29,30055652,30055851 +6 - chr6 30056250 30056469 chr6,30056250,30056469,+,L2c,LINE,L2,3154,3383,-4,30053097,30056473 -6 + chr6 30056741 30056856 chr6,30056741,30056856,-,MIR,SINE,MIR,-110,158,43,30056631,30056898 +5 - chr6 30058921 30059105 chr6,30058921,30059105,+,MIRb,SINE,MIR,27,220,-48,30058895,30059153 -6 + chr6 30059751 30059841 chr6,30059751,30059841,+,L2b,LINE,L2,3264,3365,-10,30056488,30059851 -6 + chr6 30114571 30114661 chr6,30114499,30114661,-,MER5A,DNA,hAT-Charlie,-26,163,1,30114473,30114661 -2 - chr6 30114679 30114724 chr6,30114679,30114758,-,MIRc,SINE,MIR,-166,102,22,30114513,30114779 -5 - chr6 30234039 30234268 chr6,30233710,30234422,+,L1ME4b,LINE,L1,98,826,-66,30233613,30234488 -5 + chr6 30234358 30234422 chr6,30233710,30234422,+,L1ME4b,LINE,L1,98,826,-66,30233613,30234488 -5 + chr6 30254347 30254464 chr6,30253798,30254554,+,L1ME1,LINE,L1,2840,3646,-2500,30250959,30257054 -3 + chr6 30282349 30282876 chr6,30281536,30282876,-,L1MA1,LINE,L1,-2355,5210,3836,30279181,30286711 +5 - chr6 30282876 30283275 chr6,30282876,30283275,-,MSTA,LTR,ERVL-MaLR,0,428,1,30282876,30283275 +6 - chr6 30283275 30284904 chr6,30283275,30284904,-,MSTA-int,LTR,ERVL-MaLR,0,1631,1,30283275,30284904 +6 - chr6 30284904 30285321 chr6,30284904,30285321,-,MSTA,LTR,ERVL-MaLR,0,428,1,30284904,30285321 +6 - chr6 30285321 30286054 chr6,30285321,30286662,-,L1MA1,LINE,L1,-3730,3835,2421,30281591,30289082 +1 - chr6 30287397 30288666 chr6,30286976,30288666,-,L1PREC2,LINE,L1,-434,5726,3971,30286542,30292636 +5 - chr6 30293034 30293069 chr6,30293034,30293069,+,A-rich,Low_complexity,Low_complexity,1,35,0,30293034,30293069 -6 + chr6 30293073 30293252 chr6,30293073,30293252,-,MIRb,SINE,MIR,-42,226,14,30293031,30293265 +6 - chr6 30293268 30293535 chr6,30293268,30293535,-,L3,LINE,CR1,-25,4074,3773,30293243,30297307 +6 - chr6 30293572 30293638 chr6,30293572,30293638,-,L1MEa,LINE,L1,-6001,69,3,30287571,30293640 +6 - chr6 30293661 30293744 chr6,30293661,30293744,-,L2c,LINE,L2,0,3426,3323,30293661,30297066 +6 - chr6 30293747 30293858 chr6,30293747,30293858,-,L2c,LINE,L2,-182,3193,3081,30293565,30296938 +6 - chr6 30293903 30294117 chr6,30293903,30294117,+,MIR,SINE,MIR,26,252,-10,30293878,30294127 -6 + chr6 30296132 30296237 chr6,30296051,30296310,-,MLT1I,LTR,ERVL-MaLR,-13,398,121,30296038,30296430 +1 - chr6 30300774 30300952 chr6,30298073,30300952,-,L1PA15,LINE,L1,-417,6275,3302,30297656,30304253 +5 - chr6 30300952 30301249 chr6,30300952,30301249,-,AluSz6,SINE,Alu,-15,297,1,30300937,30301249 +6 - chr6 30301249 30301383 chr6,30301249,30301383,-,L1PA15,LINE,L1,-3372,3301,3178,30297877,30304560 +6 - chr6 30301377 30301692 chr6,30301377,30301692,-,L1PA15,LINE,L1,-3821,2852,2535,30297556,30304226 +6 - chr6 30302355 30302527 chr6,30302355,30302527,-,MIRb,SINE,MIR,-98,170,3,30302257,30302529 +6 - chr6 30303319 30303423 chr6,30303319,30303423,-,MIRc,SINE,MIR,-153,115,11,30303166,30303433 +6 - chr6 30304649 30304958 chr6,30304649,30304958,-,AluSq2,SINE,Alu,0,313,1,30304649,30304958 +6 - chr6 30305227 30305349 chr6,30305227,30305349,-,MER5A,DNA,hAT-Charlie,0,189,64,30305227,30305412 +6 - chr6 30305399 30305550 chr6,30305399,30305550,-,MER5A1,DNA,hAT-Charlie,0,166,8,30305399,30305557 +6 - chr6 30306871 30306960 chr6,30306871,30307004,-,Charlie19a,DNA,hAT-Charlie,-2,384,233,30306869,30307236 +1 - chr6 30326146 30326284 chr6,30326146,30326284,-,L2b,LINE,L2,-2,3373,3238,30326144,30329521 +6 - chr6 30518713 30519199 chr6,30517794,30519199,+,LTR12D,LTR,ERV1,1,1254,0,30517794,30519199 +2 + chr6 30519199 30519217 chr6,30519199,30519439,-,AluJb,SINE,Alu,-71,241,1,30519128,30519439 -5 - chr6 30766839 30766951 chr6,30766839,30766994,-,L2,LINE,L2,-954,2465,2316,30765885,30769309 -4 - chr6 30788691 30788766 chr6,30788587,30788766,-,MIRb,SINE,MIR,-18,250,18,30788569,30788783 -2 - chr6 30791426 30791517 chr6,30791386,30791517,-,L2b,LINE,L2,0,3375,3249,30791386,30794765 -2 - chr6 30791517 30791823 chr6,30791517,30791823,-,AluSq,SINE,Alu,-10,303,1,30791507,30791823 -6 - chr6 30791823 30791981 chr6,30791823,30791981,-,L2b,LINE,L2,-127,3248,3096,30791696,30795076 -6 - chr6 30791990 30792081 chr6,30791990,30792081,+,L2c,LINE,L2,3291,3386,-1,30788700,30792082 +6 + chr6 30798654 30798772 chr6,30797820,30799073,-,L1MC5,LINE,L1,-417,8887,7695,30797403,30806767 +5 - chr6 30812866 30813154 chr6,30812845,30813154,-,AluSx1,SINE,Alu,-3,309,3,30812842,30813156 +5 - chr6 30813399 30813435 chr6,30813399,30813435,+,(GT)n,Simple_repeat,Simple_repeat,1,37,0,30813399,30813435 -6 + chr6 30813613 30813810 chr6,30813613,30813810,-,AluJr,SINE,Alu,-118,194,2,30813495,30813811 +6 - chr6 30813811 30814108 chr6,30813811,30814108,-,MER39,LTR,ERV1,-396,311,1,30813415,30814108 +6 - chr6 30814499 30814531 chr6,30814499,30814531,+,(TTC)n,Simple_repeat,Simple_repeat,1,32,0,30814499,30814531 -6 + chr6 30814591 30814772 chr6,30814591,30814843,+,MLT1J,LTR,ERVL-MaLR,230,499,-13,30814362,30814856 -2 + chr6 30830591 30830659 chr6,30830591,30830730,-,MamGypLTR1b,LTR,Gypsy,-636,146,2,30829955,30830731 +1 - chr6 30839526 30839589 chr6,30839287,30839589,-,AluSq,SINE,Alu,-7,306,5,30839280,30839593 +5 - chr6 30839637 30840019 chr6,30839637,30840026,-,MamGypLTR1a,LTR,Gypsy,-297,487,69,30839340,30840094 +2 - chr6 30847968 30848159 chr6,30847787,30848423,-,MER21C,LTR,ERVL,-164,774,132,30847623,30848554 +1 - chr6 30866982 30867283 chr6,30866948,30867283,-,AluSq,SINE,Alu,0,313,2,30866948,30867284 +5 - chr6 30867286 30867417 chr6,30867286,30867417,-,AluSq10,SINE,Alu,-181,132,2,30867105,30867418 +6 - chr6 30867417 30868170 chr6,30867417,30868170,-,Tigger1,DNA,TcMar-Tigger,-828,1590,846,30866589,30869015 +6 - chr6 30868255 30868294 chr6,30868255,30868294,+,(TGTGTT)n,Simple_repeat,Simple_repeat,1,39,0,30868255,30868294 -6 + chr6 30868303 30868381 chr6,30868303,30868381,+,MLT1F,LTR,ERVL-MaLR,471,548,0,30867833,30868381 -6 + chr6 30868381 30868703 chr6,30868381,30868703,+,Helitron3Na_Mam,RC,Helitron,65,396,-90,30868317,30868793 -6 + chr6 30868807 30869833 chr6,30868807,30869890,+,MER11A,LTR,ERVK,1,1266,0,30868807,30869890 -2 + chr6 30874782 30875080 chr6,30874782,30875080,-,AluY,SINE,Alu,-14,297,1,30874768,30875080 +6 - chr6 30875226 30875808 chr6,30875226,30875808,+,LTR9,LTR,ERV1,1,612,0,30875226,30875808 -6 + chr6 30946242 30946359 chr6,30946242,30946467,-,MIRb,SINE,MIR,-45,223,2,30946197,30946468 +2 - chr6 31053450 31053531 chr6,31053266,31053607,+,THE1A,LTR,ERVL-MaLR,1,355,0,31053266,31053607 +1 + chr6 31195280 31196824 chr6,31195280,31196824,+,LTR12C,LTR,ERV1,4,1579,0,31195277,31196824 -6 + chr6 31196865 31196966 chr6,31196865,31196966,-,AluJb,SINE,Alu,-34,278,177,31196831,31197142 +6 - chr6 31197228 31197520 chr6,31197228,31197520,-,AluSx1,SINE,Alu,-14,298,2,31197214,31197521 +6 - chr6 31200181 31200503 chr6,31200181,31200503,+,MLT1A,LTR,ERVL-MaLR,56,370,-4,31200126,31200507 -6 + chr6 31200581 31200638 chr6,31200581,31200774,-,L2a,LINE,L2,0,3426,3221,31200581,31203994 +2 - chr6 31201876 31201918 chr6,31201621,31201933,+,AluSc,SINE,Alu,1,309,0,31201621,31201933 -1 + chr6 31293908 31294050 chr6,31293780,31294050,+,MIR,SINE,MIR,11,262,0,31293770,31294050 -5 + chr6 31301472 31301642 chr6,31300557,31302000,+,ERV3-16A3_I-int,LTR,ERVL,3314,4785,-441,31297244,31302441 -1 + chr6 31395318 31395329 chr6,31395318,31395329,+,(AC)n,Simple_repeat,Simple_repeat,1,10,0,31395318,31395329 -6 + chr6 31395329 31395481 chr6,31395329,31395481,+,AluJr,SINE,Alu,1,137,-175,31395329,31395656 -6 + chr6 31395481 31395495 chr6,31395481,31395517,+,(AC)n,Simple_repeat,Simple_repeat,1,36,0,31395481,31395517 -1 + chr6 31442130 31442169 chr6,31442130,31442169,+,(GCCCCT)n,Simple_repeat,Simple_repeat,1,40,0,31442130,31442169 +6 + chr6 31445734 31445768 chr6,31445734,31445768,+,(GTTT)n,Simple_repeat,Simple_repeat,1,36,0,31445734,31445768 +6 + chr6 31445807 31446069 chr6,31445807,31446069,-,AluJb,SINE,Alu,-54,258,1,31445753,31446069 -6 - chr6 31446270 31446574 chr6,31446270,31446574,-,AluJb,SINE,Alu,-4,308,6,31446266,31446579 -6 - chr6 31446681 31446973 chr6,31446681,31447186,-,Tigger3b,DNA,TcMar-Tigger,0,1231,715,31446681,31447900 -5 - chr6 31463419 31463715 chr6,31463419,31463715,-,LTR16B2,LTR,ERVL,-110,352,50,31463309,31463764 -6 - chr6 31463715 31464933 chr6,31463715,31464933,-,ERV3-16A3_I-int,LTR,ERVL,-247,4979,3776,31463468,31468708 -5 - chr6 31464930 31465784 chr6,31464930,31465784,-,ERV3-16A3_I-int,LTR,ERVL,-2235,3479,2452,31462695,31468235 -5 - chr6 31477027 31477037 chr6,31476569,31477037,+,LTR33,LTR,ERVL,10,510,-5,31476560,31477042 +2 + chr6 31477112 31477235 chr6,31477112,31477235,-,AluJr,SINE,Alu,-189,123,1,31476923,31477235 -6 - chr6 31542705 31542962 chr6,31542685,31542962,-,AluSx1,SINE,Alu,-14,298,1,31542671,31542962 -2 - chr6 32000004 32000127 chr6,32000004,32000127,-,AluJr,SINE,Alu,-189,123,1,31999815,32000127 +6 - chr6 32000602 32000688 chr6,32000602,32000688,-,L2,LINE,L2,-1054,2365,2279,31999548,32002966 +6 - chr6 32003020 32003202 chr6,32002961,32003202,-,L3b,LINE,CR1,-630,4602,4454,32002331,32007655 +4 - chr6 32003424 32003521 chr6,32003424,32003864,-,L2c,LINE,L2,0,3387,2926,32003424,32006789 +1 - chr6 32032733 32032864 chr6,32032733,32032864,-,AluJr,SINE,Alu,-181,131,1,32032552,32032864 +6 - chr6 32033339 32033425 chr6,32033339,32033425,-,L2,LINE,L2,-1054,2365,2279,32032285,32035703 +6 - chr6 32035757 32035939 chr6,32035698,32035939,-,L3b,LINE,CR1,-630,4602,4454,32035068,32040392 +4 - chr6 32036161 32036258 chr6,32036161,32036601,-,L2c,LINE,L2,0,3387,2926,32036161,32039526 +1 - chr6 32185521 32185577 chr6,32185521,32185577,+,A-rich,Low_complexity,Low_complexity,1,56,0,32185521,32185577 -6 + chr6 32185609 32185629 chr6,32185609,32185629,+,(ACC)n,Simple_repeat,Simple_repeat,1,20,0,32185609,32185629 -6 + chr6 32185629 32185659 chr6,32185629,32185659,+,(CAA)n,Simple_repeat,Simple_repeat,1,30,0,32185629,32185659 -6 + chr6 32255711 32255941 chr6,32255571,32255986,-,L1PA12,LINE,L1,-6566,415,7,32249005,32255992 -1 - chr6 32262612 32263749 chr6,32262048,32263749,-,L1PA7,LINE,L1,-4685,1814,10,32257363,32263758 -2 - chr6 32263744 32263948 chr6,32263744,32263948,-,L1MDa,LINE,L1,-5148,1485,1218,32258596,32265165 -6 - chr6 32263950 32264044 chr6,32263950,32264044,-,L1PA11,LINE,L1,0,6174,6089,32263950,32270132 -6 - chr6 32264044 32264126 chr6,32264044,32264126,-,L1MDb,LINE,L1,-3746,2798,2709,32260298,32266834 -6 - chr6 32264118 32265265 chr6,32264118,32265265,-,L1PA4,LINE,L1,0,6155,5008,32264118,32270272 -6 - chr6 32265263 32265774 chr6,32265263,32265774,+,L1PA4,LINE,L1,4487,5016,-1130,32260777,32266904 +6 + chr6 32265770 32265838 chr6,32265770,32266256,-,L1MDb,LINE,L1,-5235,1312,795,32260535,32267050 -5 - chr6 32718158 32718367 chr6,32718158,32718367,+,LTR78,LTR,ERV1,864,1074,-230,32717295,32718597 +6 + chr6 32718381 32718440 chr6,32718381,32718545,+,LTR78,LTR,ERV1,1131,1295,-9,32717251,32718554 +1 + chr6 32718590 32718776 chr6,32718555,32718776,-,MSTB1,LTR,ERVL-MaLR,-53,379,152,32718502,32718927 -2 - chr6 32846108 32846303 chr6,32846108,32846303,+,MIRb,SINE,MIR,20,210,-58,32846089,32846361 +5 + chr6 32846339 32846466 chr6,32846339,32846466,+,AluJo,SINE,Alu,1,127,-185,32846339,32846651 +6 + chr6 32970867 32970886 chr6,32970867,32970899,+,G-rich,Low_complexity,Low_complexity,1,32,0,32970867,32970899 +5 + chr6 32972076 32972100 chr6,32972076,32972100,+,(CG)n,Simple_repeat,Simple_repeat,1,24,0,32972076,32972100 -6 + chr6 33147215 33147313 chr6,33147136,33147313,+,LTR83,LTR,ERVL,203,375,-405,33146934,33147718 +2 + chr6 33147313 33147585 chr6,33147313,33147585,+,AluJb,SINE,Alu,1,299,-13,33147313,33147598 +6 + chr6 33147585 33147767 chr6,33147585,33147949,+,LTR83,LTR,ERVL,376,776,-4,33147210,33147953 +5 + chr6 33246252 33246455 chr6,33246252,33246455,+,MLT1K,LTR,ERVL-MaLR,5,206,-389,33246248,33246844 -6 + chr6 33246739 33246800 chr6,33246677,33246800,+,MIRb,SINE,MIR,70,207,-61,33246608,33246861 -4 + chr6 33246790 33246856 chr6,33246790,33246899,+,L2a,LINE,L2,3304,3424,-2,33243487,33246901 -1 + chr6 33254698 33254964 chr6,33254668,33254964,-,AluJb,SINE,Alu,-8,304,7,33254660,33254970 -5 - chr6 33254964 33254989 chr6,33254964,33255107,+,MER33,DNA,hAT-Charlie,144,302,-22,33254821,33255129 +5 + chr6 33454054 33454248 chr6,33454054,33454248,+,MIRb,SINE,MIR,20,253,-15,33454035,33454263 -6 + chr6 33586145 33586338 chr6,33586145,33586338,-,MIR,SINE,MIR,-11,251,18,33586134,33586355 +6 - chr6 33586882 33586917 chr6,33586882,33586917,+,(GGCCCTG)n,Simple_repeat,Simple_repeat,1,36,0,33586882,33586917 -6 + chr6 33587025 33587055 chr6,33587025,33587055,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,33587025,33587055 -6 + chr6 33587084 33587257 chr6,33587084,33587257,+,MIR3,SINE,MIR,31,201,-7,33587054,33587264 -6 + chr6 33587359 33587490 chr6,33587359,33587490,-,X7C_LINE,LINE,CR1,-7,229,106,33587352,33587595 +6 - chr6 33587517 33587636 chr6,33587517,33587636,+,MIR3,SINE,MIR,9,152,-56,33587509,33587692 -6 + chr6 33587755 33587870 chr6,33587755,33588052,+,AluJb,SINE,Alu,1,297,-15,33587755,33588067 -2 + chr6 33867506 33867747 chr6,33867456,33867747,-,MLT1N2,LTR,ERVL-MaLR,-2,560,239,33867454,33867985 +5 - chr6 33890327 33891088 chr6,33890327,33891088,+,MER4E,LTR,ERV1,1,766,0,33890327,33891088 -6 + chr6 33900355 33900473 chr6,33900168,33900505,+,L2c,LINE,L2,3029,3387,0,33897140,33900505 +1 + chr6 33912576 33912912 chr6,33912576,33912912,+,L2a,LINE,L2,3064,3426,0,33909513,33912912 +6 + chr6 33914726 33914885 chr6,33914469,33914885,+,MER66A,LTR,ERV1,27,478,0,33914443,33914885 +2 + chr6 33916290 33917362 chr6,33916290,33917362,-,MER11C,LTR,ERVK,-14,1057,1,33916276,33917362 -6 - chr6 33924334 33924515 chr6,33924262,33924515,+,MLT1J,LTR,ERVL-MaLR,193,505,-7,33924070,33924522 +2 + chr6 33924905 33924934 chr6,33924905,33924934,+,(GCTGGT)n,Simple_repeat,Simple_repeat,1,31,0,33924905,33924934 +6 + chr6 33925248 33925436 chr6,33925248,33925436,-,MER63A,DNA,hAT-Blackjack,-2,208,1,33925246,33925436 -6 - chr6 33926947 33926967 chr6,33926947,33926967,+,(TC)n,Simple_repeat,Simple_repeat,1,20,0,33926947,33926967 +6 + chr6 33926968 33927008 chr6,33926968,33927008,+,(CA)n,Simple_repeat,Simple_repeat,1,40,0,33926968,33927008 +6 + chr6 33927538 33927631 chr6,33927538,33927690,+,Charlie18a,DNA,hAT-Charlie,183,333,-9,33927356,33927699 +5 + chr6 34280336 34280370 chr6,34280336,34280370,+,A-rich,Low_complexity,Low_complexity,1,34,0,34280336,34280370 +6 + chr6 34283197 34283502 chr6,34283197,34283502,-,AluSx4,SINE,Alu,-5,305,1,34283192,34283502 -6 - chr6 34284532 34284551 chr6,34284532,34284551,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,34284532,34284551 +6 + chr6 34286076 34286380 chr6,34286076,34286380,-,AluSz6,SINE,Alu,-7,305,1,34286069,34286380 -6 - chr6 34697159 34697205 chr6,34697139,34697205,-,MIR3,SINE,MIR,-56,152,81,34697083,34697285 -2 - chr6 35221273 35221353 chr6,35221273,35221353,+,MIRc,SINE,MIR,55,134,-134,35221219,35221487 -6 + chr6 35221487 35221666 chr6,35221487,35221666,+,L2a,LINE,L2,3220,3426,0,35218268,35221666 -6 + chr6 35222904 35223209 chr6,35222904,35223209,+,AluJr,SINE,Alu,1,299,-13,35222904,35223222 -6 + chr6 35223209 35223452 chr6,35223209,35223452,-,MIR,SINE,MIR,-5,257,6,35223204,35223457 +6 - chr6 35223492 35223645 chr6,35223492,35223645,-,MER5B,DNA,hAT-Charlie,-25,153,1,35223467,35223645 +6 - chr6 35224053 35224179 chr6,35224053,35224179,+,HAL1ME,LINE,L1,1107,1229,-1236,35222947,35225415 -6 + chr6 35224345 35224630 chr6,35224345,35224659,+,AluSz,SINE,Alu,1,311,-1,35224345,35224660 -1 + chr6 35545361 35545423 chr6,35545361,35545423,+,(CTCCA)n,Simple_repeat,Simple_repeat,1,65,0,35545361,35545423 +6 + chr6 35545565 35545669 chr6,35545565,35545791,+,MER97c,DNA,hAT-Tip100,8,233,-896,35545558,35546687 +5 + chr6 35734011 35734027 chr6,35734011,35734165,-,Charlie18a,DNA,hAT-Charlie,0,342,192,35734011,35734356 +2 - chr6 35736841 35736909 chr6,35736612,35736909,-,AluSz,SINE,Alu,-14,298,1,35736598,35736909 +4 - chr6 36146698 36146755 chr6,36146525,36146755,-,AluJr,SINE,Alu,-4,308,85,36146521,36146839 +5 - chr6 36146886 36146930 chr6,36146886,36147018,+,MIRb,SINE,MIR,119,268,0,36146768,36147018 -2 + chr6 36158068 36158639 chr6,36158055,36158639,-,L1MC,LINE,L1,-707,5637,5045,36157348,36163683 +5 - chr6 36179617 36179707 chr6,36179595,36179726,+,FLAM_A,SINE,Alu,1,131,-11,36179595,36179737 -3 + chr6 36393067 36393083 chr6,36392976,36393265,-,AluSp,SINE,Alu,-18,295,1,36392958,36393265 -3 - chr6 36393438 36393462 chr6,36393265,36393462,+,L2a,LINE,L2,2949,3131,-295,36390317,36393757 +5 + chr6 36940071 36940086 chr6,36939893,36940086,-,MER3,DNA,hAT-Charlie,0,209,1,36939893,36940086 +5 - chr6 36940086 36940133 chr6,36940086,36940133,+,L1ME3Cz,LINE,L1,654,717,-280,36939433,36940413 -6 + chr6 37534276 37534345 chr6,37534246,37534358,+,MER81,DNA,hAT-Blackjack,2,114,0,37534245,37534358 +3 + chr6 37534933 37534957 chr6,37534787,37535147,-,L1ME4b,LINE,L1,-5,919,507,37534782,37535653 -3 - chr6 37545149 37545265 chr6,37545149,37545265,+,MER5B,DNA,hAT-Charlie,8,119,-59,37545142,37545324 +6 + chr6 37546167 37546192 chr6,37546167,37546192,+,(AAGG)n,Simple_repeat,Simple_repeat,1,26,0,37546167,37546192 +6 + chr6 37549978 37550062 chr6,37549852,37550062,-,MIR,SINE,MIR,0,262,47,37549852,37550108 -2 - chr6 37550743 37550860 chr6,37550743,37550872,+,MIR,SINE,MIR,82,221,-41,37550662,37550913 +5 + chr6 37568849 37569009 chr6,37568849,37569009,-,MIRb,SINE,MIR,-15,253,88,37568834,37569096 -6 - chr6 37570167 37570243 chr6,37570167,37570243,-,L2b,LINE,L2,-9,3366,3287,37570158,37573529 -6 - chr6 37570583 37570720 chr6,37570583,37570720,+,L2c,LINE,L2,3253,3385,-2,37567331,37570722 +6 + chr6 37570856 37571185 chr6,37570856,37571185,-,LTR16A1,LTR,ERVL,-15,441,81,37570841,37571265 -6 - chr6 37571433 37571460 chr6,37571433,37571798,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,37571433,37571798 -5 - chr6 38482401 38482433 chr6,38482401,38482433,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,38482401,38482433 +6 + chr6 39881804 39881826 chr6,39881729,39881826,+,MIR,SINE,MIR,169,262,0,39881561,39881826 -5 + chr6 39882108 39882153 chr6,39882108,39882153,-,L2,LINE,L2,-697,2722,2677,39881411,39884829 +6 - chr6 39884124 39884222 chr6,39884124,39884222,+,(CTTC)n,Simple_repeat,Simple_repeat,1,103,0,39884124,39884222 -6 + chr6 39884598 39884649 chr6,39884598,39884649,+,(GGGGCT)n,Simple_repeat,Simple_repeat,1,51,0,39884598,39884649 -6 + chr6 39889039 39889055 chr6,39889039,39889603,+,L1ME3,LINE,L1,5082,5697,-465,39883958,39890068 -2 + chr6 39897367 39897400 chr6,39897367,39897961,-,LTR43,LTR,ERV1,0,602,1,39897367,39897961 +1 - chr6 39899749 39899866 chr6,39899726,39899866,-,MER5A1,DNA,hAT-Charlie,-14,152,8,39899712,39899873 +4 - chr6 40271570 40271764 chr6,40271570,40271764,+,L2a,LINE,L2,3211,3425,-1,40268360,40271765 -6 + chr6 40271825 40271960 chr6,40271825,40272185,-,MSTD,LTR,ERVL-MaLR,-2,394,1,40271823,40272185 +2 - chr6 40276009 40276126 chr6,40276009,40276220,+,MIR3,SINE,MIR,18,217,-51,40275992,40276271 -2 + chr6 40344344 40344756 chr6,40344298,40344823,-,LTR33B,LTR,ERVL,0,503,1,40344298,40344823 +5 - chr6 40346066 40346151 chr6,40346066,40346230,+,MIR,SINE,MIR,44,245,-17,40346023,40346247 -1 + chr6 40359019 40359481 chr6,40359019,40359493,-,L1MD2,LINE,L1,-6046,501,26,40352973,40359518 +2 - chr6 40369389 40369474 chr6,40369305,40369682,-,THE1D,LTR,ERVL-MaLR,0,381,1,40369305,40369682 +1 - chr6 40523855 40523933 chr6,40523855,40523948,-,MIRc,SINE,MIR,-154,114,15,40523701,40523962 +1 - chr6 40714907 40714928 chr6,40714891,40714928,-,MamRTE1,LINE,RTE-BovB,-141,3671,3635,40714750,40718562 +4 - chr6 40714930 40714963 chr6,40714930,40714963,-,MamRTE1,LINE,RTE-BovB,-151,3661,3629,40714779,40718591 +6 - chr6 41502581 41502611 chr6,41502581,41502626,+,GA-rich,Low_complexity,Low_complexity,1,48,0,41502581,41502626 +4 + chr6 41519376 41519423 chr6,41519354,41519423,+,L2c,LINE,L2,3318,3387,0,41516037,41519423 +2 + chr6 41720469 41720634 chr6,41720469,41720634,-,MIRc,SINE,MIR,-27,241,71,41720442,41720704 -6 - chr6 41868757 41868906 chr6,41868757,41869063,-,AluSx,SINE,Alu,-6,306,1,41868751,41869063 -4 - chr6 41869614 41869731 chr6,41869429,41869737,+,AluSz6,SINE,Alu,2,312,0,41869428,41869737 +5 + chr6 42092416 42092707 chr6,42092416,42092707,-,AluSz6,SINE,Alu,-10,302,12,42092406,42092718 +6 - chr6 42093071 42093285 chr6,42093071,42093285,-,MER20,DNA,hAT-Charlie,0,219,2,42093071,42093286 +6 - chr6 42093361 42093643 chr6,42093361,42093643,-,AluSx1,SINE,Alu,-15,297,2,42093346,42093644 +6 - chr6 42093723 42093925 chr6,42093723,42093925,+,MIR,SINE,MIR,7,238,-24,42093717,42093949 -6 + chr6 42093934 42094259 chr6,42093934,42094279,-,LTR16,LTR,ERVL,-15,423,4,42093919,42094282 +1 - chr6 42940364 42940499 chr6,42940186,42940499,-,AluSg7,SINE,Alu,0,309,1,42940186,42940499 -1 - chr6 42941510 42941615 chr6,42941492,42941663,-,AluJb,SINE,Alu,-20,292,123,42941472,42941785 -3 - chr6 42943751 42943902 chr6,42943751,42943902,-,MamRep605,LTR?,LTR?,-95,754,577,42943656,42944478 -6 - chr6 42943919 42943970 chr6,42943919,42944218,+,AluSx3,SINE,Alu,1,300,-11,42943919,42944229 +5 + chr6 42947608 42947720 chr6,42947426,42947720,-,AluY,SINE,Alu,-17,294,1,42947409,42947720 -2 - chr6 42947778 42947860 chr6,42947778,42947860,-,L1PB4,LINE,L1,-1,6155,6074,42947777,42953933 -6 - chr6 42948194 42948210 chr6,42948194,42948210,+,A-rich,Low_complexity,Low_complexity,1,17,0,42948194,42948210 +6 + chr6 42948210 42948357 chr6,42948210,42948357,+,FLAM_A,SINE,Alu,1,142,0,42948210,42948357 +6 + chr6 43033914 43034183 chr6,43033914,43034183,-,L1MB8,LINE,L1,-10,6168,5879,43033904,43040061 +6 - chr6 43222990 43223020 chr6,43222984,43223020,+,(CTTCCT)n,Simple_repeat,Simple_repeat,1,37,0,43222984,43223020 -4 + chr6 43223152 43223215 chr6,43223152,43223215,+,L2a,LINE,L2,3364,3426,0,43219789,43223215 -6 + chr6 43223500 43223640 chr6,43223500,43223640,+,MIR3,SINE,MIR,16,172,-36,43223485,43223676 -6 + chr6 43223651 43223732 chr6,43223651,43223732,+,MER5B,DNA,hAT-Charlie,21,116,-62,43223631,43223794 -6 + chr6 43588230 43588290 chr6,43588153,43588290,-,L1ME5,LINE,L1,-16,6178,6036,43588137,43594325 +5 - chr6 43588346 43588384 chr6,43588346,43588384,+,(TCCT)n,Simple_repeat,Simple_repeat,1,38,0,43588346,43588384 -6 + chr6 43588384 43588464 chr6,43588384,43588464,+,(CTTT)n,Simple_repeat,Simple_repeat,1,81,0,43588384,43588464 -6 + chr6 43588465 43588746 chr6,43588465,43588752,-,AluSz,SINE,Alu,-26,286,1,43588439,43588752 +2 - chr6 43590890 43590952 chr6,43590640,43590952,+,AluSx1,SINE,Alu,1,309,-3,43590640,43590955 -4 + chr6 43722786 43722959 chr6,43722747,43723278,-,MLT1K,LTR,ERVL-MaLR,-15,580,18,43722732,43723295 +5 - chr6 43729218 43729284 chr6,43729123,43729284,+,L2c,LINE,L2,2955,3112,-275,43726169,43729559 -4 + chr6 43995780 43996219 chr6,43995780,43996219,-,L1ME3,LINE,L1,-31,6131,5674,43995749,44001892 +6 - chr6 43996432 43996484 chr6,43996432,43996484,+,(TG)n,Simple_repeat,Simple_repeat,1,52,0,43996432,43996484 -6 + chr6 43996494 43996969 chr6,43996494,43996969,-,MLT1C,LTR,ERVL-MaLR,-9,458,1,43996485,43996969 +6 - chr6 43996980 43997057 chr6,43996980,43997057,+,(TG)n,Simple_repeat,Simple_repeat,1,78,0,43996980,43997057 -6 + chr6 43999218 43999279 chr6,43997915,43999279,+,LTR12C,LTR,ERV1,2,1577,-2,43997914,43999281 -4 + chr6 43999279 43999508 chr6,43999279,43999538,+,AluJr,SINE,Alu,53,311,-1,43999227,43999539 -2 + chr6 44001095 44001116 chr6,44001095,44001152,-,L2c,LINE,L2,-300,3087,3028,44000795,44004179 +2 - chr6 44074596 44074635 chr6,44074596,44074635,+,(AC)n,Simple_repeat,Simple_repeat,1,39,0,44074596,44074635 +6 + chr6 44074596 44074635 chr6,44074596,44074635,+,(AC)n,Simple_repeat,Simple_repeat,1,39,0,44074596,44074635 -6 + chr6 44077795 44077935 chr6,44077795,44077935,+,MamRep564,Unknown,Unknown,98,233,-124,44077698,44078059 +6 + chr6 44217483 44217536 chr6,44217483,44217536,+,(CTG)n,Simple_repeat,Simple_repeat,1,54,0,44217483,44217536 +6 + chr6 44218184 44218230 chr6,44218184,44218230,+,L2b,LINE,L2,3324,3367,-8,44214861,44218238 +6 + chr6 44526554 44526612 chr6,44526458,44526612,-,Charlie19a,DNA,hAT-Charlie,-39,347,185,44526419,44526796 -2 - chr6 44551652 44551839 chr6,44551652,44551839,+,MIR3,SINE,MIR,13,206,-2,44551640,44551841 +6 + chr6 44551951 44552111 chr6,44551951,44552111,-,L3b,LINE,CR1,-145,5087,4911,44551806,44557021 -6 - chr6 44552621 44552737 chr6,44552621,44552737,+,MIR,SINE,MIR,70,195,-67,44552552,44552804 +6 + chr6 44552787 44552916 chr6,44552787,44552916,+,MER102c,DNA,hAT-Charlie,65,204,-127,44552723,44553043 +6 + chr6 45421268 45421291 chr6,45421268,45421291,+,(AAAC)n,Simple_repeat,Simple_repeat,1,25,0,45421268,45421291 -6 + chr6 45573798 45574067 chr6,45573798,45574067,-,AluSx3,SINE,Alu,0,311,44,45573798,45574110 +6 - chr6 45574086 45574114 chr6,45574086,45574267,-,MER63A,DNA,hAT-Blackjack,-8,202,22,45574078,45574288 +2 - chr6 45576076 45576139 chr6,45576076,45576139,+,MIRc,SINE,MIR,127,192,-76,45575950,45576215 -6 + chr6 45576627 45576770 chr6,45576627,45576792,+,MIRc,SINE,MIR,37,220,-48,45576591,45576840 -1 + chr6 46097093 46097346 chr6,46096725,46097357,+,L1ME2z,LINE,L1,5811,6433,-11,46090915,46097368 -5 + chr6 46102540 46102614 chr6,46102064,46102614,-,MER39B,LTR,ERV1,-23,630,4,46102041,46102617 +5 - chr6 46122948 46123109 chr6,46119457,46125580,+,L1PA5,LINE,L1,11,6146,-8,46119447,46125588 -3 + chr6 46532600 46532714 chr6,46532600,46532714,-,L1MB7,LINE,L1,-2,6176,6063,46532598,46538776 -6 - chr6 46532723 46532758 chr6,46532723,46532945,-,L1PA3,LINE,L1,-1379,4767,4546,46531344,46537490 -5 - chr6 46758296 46758394 chr6,46758295,46758394,+,L1ME4a,LINE,L1,6023,6124,0,46752273,46758394 -5 + chr6 46760943 46761054 chr6,46760890,46761054,-,MIRb,SINE,MIR,-40,228,54,46760850,46761107 +4 - chr6 46761047 46761158 chr6,46761047,46761254,+,MIR,SINE,MIR,41,256,-6,46761007,46761260 -1 + chr6 46903471 46903501 chr6,46903464,46903501,+,G-rich,Low_complexity,Low_complexity,1,37,0,46903464,46903501 +1 + chr6 46905345 46905419 chr6,46905345,46905419,+,A-rich,Low_complexity,Low_complexity,1,76,0,46905345,46905419 +6 + chr6 46907868 46907891 chr6,46907702,46907891,+,MIRc,SINE,MIR,10,204,-64,46907693,46907955 +2 + chr6 49721931 49722043 chr6,49721415,49722043,-,MER41-int,LTR,ERV1,-5311,635,1,49716104,49722043 -1 - chr6 49722043 49722594 chr6,49722043,49722594,-,MER41A,LTR,ERV1,0,554,1,49722043,49722594 -6 - chr6 49722594 49722811 chr6,49722594,49722811,+,MER50,LTR,ERV1,492,707,-27,49722103,49722838 +6 + chr6 49723203 49723278 chr6,49723203,49723278,-,L1MCa,LINE,L1,-4797,1836,1697,49718406,49724974 -6 - chr6 49723284 49723456 chr6,49723284,49723456,-,L1MD,LINE,L1,-1846,4300,4115,49721438,49727570 -6 - chr6 49723456 49724007 chr6,49723456,49724041,+,MER4B,LTR,ERV1,1,610,0,49723456,49724041 +5 + chr6 49817430 49817472 chr6,49817345,49817472,-,MIR,SINE,MIR,-43,219,94,49817302,49817565 -1 - chr6 49819211 49819322 chr6,49819211,49819384,+,MER5A,DNA,hAT-Charlie,2,188,-1,49819210,49819385 +4 + chr6 49820363 49820442 chr6,49820363,49820973,+,L1PA10,LINE,L1,5544,6164,-4,49814820,49820977 +5 + chr6 49824625 49824782 chr6,49824625,49824790,+,FAM,SINE,Alu,1,164,-21,49824625,49824811 -1 + chr6 50514035 50514179 chr6,50514030,50514179,-,MER126,DNA,DNA,-275,174,18,50513755,50514196 -1 - chr6 50587607 50587685 chr6,50587090,50587705,-,L1MA9,LINE,L1,0,6312,5688,50587090,50593392 +5 - chr6 50596603 50596730 chr6,50596583,50596865,-,MER46C,DNA,TcMar-Tigger,0,338,45,50596583,50596909 +3 - chr6 50636762 50636865 chr6,50636749,50636943,+,MIRb,SINE,MIR,60,260,-8,50636690,50636951 -1 + chr6 51599723 51600451 chr6,51599451,51600587,+,L1PB1,LINE,L1,4973,6140,-11,51594479,51600598 +1 + chr6 51622766 51622884 chr6,51622766,51623571,-,L1M5,LINE,L1,-1133,5013,4164,51621633,51627734 -5 - chr6 52151021 52151119 chr6,52151021,52151212,+,MIR,SINE,MIR,33,236,-26,52150989,52151238 -1 + chr6 52577608 52577710 chr6,52577608,52577710,-,L2a,LINE,L2,-14,3412,3293,52577594,52581002 -6 - chr6 52578502 52578594 chr6,52578469,52578699,-,AluSz,SINE,Alu,-26,286,55,52578443,52578753 -3 - chr6 52579375 52579609 chr6,52579191,52579722,+,MLT1F1,LTR,ERVL-MaLR,16,569,0,52579176,52579722 +5 + chr6 52582863 52583248 chr6,52582739,52583248,-,MLT1L,LTR,ERVL-MaLR,-67,543,3,52582672,52583250 -5 - chr6 52583632 52583746 chr6,52583632,52583746,+,Zaphod3,DNA,hAT-Tip100,1,108,-2515,52583632,52586261 +6 + chr6 52583746 52583979 chr6,52583746,52583979,+,L1MD3,LINE,L1,7735,7986,-9,52576012,52583988 +6 + chr6 52583979 52583993 chr6,52583979,52584186,+,MER97c,DNA,hAT-Tip100,90,290,-839,52583890,52585025 +5 + chr6 53125711 53125797 chr6,53125711,53125797,+,L1ME3B,LINE,L1,5805,5907,-335,53119907,53126132 -6 + chr6 53125800 53125902 chr6,53125800,53125902,+,L1ME3A,LINE,L1,6059,6168,-5,53119742,53125907 -6 + chr6 53125904 53126146 chr6,53125904,53126165,+,L1ME3B,LINE,L1,5904,6193,-49,53120001,53126214 -1 + chr6 53503185 53503328 chr6,53503031,53503407,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,53503031,53503407 +1 + chr6 53506875 53506899 chr6,53506875,53506899,+,(AATA)n,Simple_repeat,Simple_repeat,1,26,0,53506875,53506899 +6 + chr6 53561289 53562974 chr6,53560289,53562974,+,MER4-int,LTR,ERV1,3837,8269,-1,53556453,53562975 -5 + chr6 53562975 53563424 chr6,53562975,53563424,+,MER4A1,LTR,ERV1,1,470,-2,53562975,53563426 -6 + chr6 53563634 53563830 chr6,53563634,53563830,+,MIRb,SINE,MIR,51,266,-2,53563584,53563832 -6 + chr6 53564750 53564889 chr6,53564734,53564890,-,MIRb,SINE,MIR,-104,164,8,53564630,53564897 +3 - chr6 53569281 53569348 chr6,53569171,53569348,-,MIRb,SINE,MIR,-14,254,76,53569157,53569423 +5 - chr6 53573200 53573221 chr6,53573154,53573221,+,Kanga11a,DNA,TcMar-Tc2,894,959,-11,53572261,53573232 -4 + chr6 53583299 53583333 chr6,53583246,53583472,+,MSTA,LTR,ERVL-MaLR,199,428,0,53583048,53583472 -1 + chr6 53616886 53617171 chr6,53616804,53617217,-,MSTA,LTR,ERVL-MaLR,-1,427,1,53616803,53617217 +1 - chr6 53740749 53740975 chr6,53739006,53740975,+,L1ME3A,LINE,L1,2456,4508,-1638,53736551,53742613 -5 + chr6 53740975 53741108 chr6,53740975,53741108,-,MLT1H2,LTR,ERVL-MaLR,-410,150,18,53740565,53741125 +6 - chr6 53741148 53741338 chr6,53741148,53741910,-,MLT1H2-int,LTR,ERVL-MaLR,-24,1385,680,53741124,53742589 +2 - chr6 53746914 53747015 chr6,53746914,53747015,+,MIRb,SINE,MIR,12,117,-151,53746903,53747166 -6 + chr6 53790875 53791188 chr6,53790703,53791312,-,L1ME2,LINE,L1,-41,6123,5521,53790662,53796832 +5 - chr6 53994790 53995081 chr6,53994762,53995081,-,AluSq2,SINE,Alu,0,313,1,53994762,53995081 -5 - chr6 53995304 53995389 chr6,53995304,53995389,+,MER5A,DNA,hAT-Charlie,40,123,-66,53995265,53995455 +6 + chr6 53995322 53995463 chr6,53995322,53995463,-,MER5A,DNA,hAT-Charlie,-45,144,4,53995277,53995466 -6 - chr6 53998900 53999056 chr6,53998900,53999056,+,Charlie8,DNA,hAT-Charlie,41,210,-2218,53998860,54001274 +6 + chr6 54006971 54007152 chr6,54006953,54007222,+,MLT1O,LTR,ERVL-MaLR,110,389,-153,54006844,54007375 +5 + chr6 54018015 54018050 chr6,54018015,54018050,+,(ACAAA)n,Simple_repeat,Simple_repeat,1,35,0,54018015,54018050 -6 + chr6 54028920 54029103 chr6,54028920,54029103,-,HAL1,LINE,L1,-2333,174,1,54026587,54029103 +6 - chr6 54029208 54029451 chr6,54029208,54029599,+,MLT1A1,LTR,ERVL-MaLR,1,407,-1,54029208,54029600 -5 + chr6 54031403 54031475 chr6,54031392,54031475,+,L2c,LINE,L2,3278,3363,-24,54028115,54031499 -5 + chr6 54031508 54031546 chr6,54031508,54031546,+,(TG)n,Simple_repeat,Simple_repeat,1,38,0,54031508,54031546 -6 + chr6 54031572 54031701 chr6,54031572,54031749,+,LTR88c,LTR,Gypsy?,6,195,-667,54031567,54032416 -2 + chr6 54032377 54032391 chr6,54032336,54032391,+,(ATTTTT)n,Simple_repeat,Simple_repeat,1,57,0,54032336,54032391 -4 + chr6 54041041 54041073 chr6,54040383,54041090,+,L1PA16,LINE,L1,5459,6166,0,54034925,54041090 -3 + chr6 54045539 54045825 chr6,54045539,54045907,+,MSTA,LTR,ERVL-MaLR,1,418,-10,54045539,54045917 -2 + chr6 54045929 54045992 chr6,54045907,54045992,+,MSTA,LTR,ERVL-MaLR,341,428,0,54045567,54045992 -5 + chr6 54046423 54046663 chr6,54046423,54046663,-,L1ME4a,LINE,L1,-176,5948,5694,54046247,54052356 +5 - chr6 54079526 54079588 chr6,54079485,54079588,-,L1ME4a,LINE,L1,-44,6080,5971,54079441,54085558 +4 - chr6 54079617 54079726 chr6,54079617,54080074,-,LTR85c,LTR,Gypsy?,-5,818,358,54079612,54080431 +1 - chr6 54365335 54365519 chr6,54365298,54365667,-,MLT1J2,LTR,ERVL-MaLR,0,444,69,54365298,54365735 +5 - chr6 54369953 54369971 chr6,54369953,54370117,-,L2b,LINE,L2,-1232,2187,2025,54368721,54372141 +1 - chr6 54840133 54840385 chr6,54840133,54840385,-,MER20B,DNA,hAT-Charlie,-440,343,71,54839693,54840455 +6 - chr6 54943167 54943179 chr6,54942904,54943179,-,AluSg,SINE,Alu,-14,296,22,54942890,54943200 -1 - chr6 54944899 54944996 chr6,54944899,54944996,-,FLAM_C,SINE,Alu,-80,222,32,54944819,54945027 -6 - chr6 56863936 56864078 chr6,56863936,56864398,+,MLT2C2,LTR,ERVL,1,464,0,56863936,56864398 +5 + chr6 57114894 57114945 chr6,57114821,57114945,-,L1ME4a,LINE,L1,-26,6098,5953,57114795,57120897 +5 - chr6 57114982 57115258 chr6,57114982,57115274,+,AluJr,SINE,Alu,6,291,-21,57114977,57115295 -5 + chr6 57116426 57116547 chr6,57116276,57116570,+,AluSz,SINE,Alu,1,302,-10,57116276,57116580 -3 + chr6 57116840 57116921 chr6,57116807,57116937,+,FRAM,SINE,Alu,2,211,-90,57116806,57117027 -3 + chr6 57151079 57151195 chr6,57151079,57151397,+,AluY,SINE,Alu,1,307,-4,57151079,57151401 -2 + chr6 57164892 57165438 chr6,57164892,57165438,-,L1M4,LINE,L1,-5434,2083,1457,57159458,57166894 +5 - chr6 57165438 57165463 chr6,57165438,57165463,+,(TGAT)n,Simple_repeat,Simple_repeat,1,25,0,57165438,57165463 -6 + chr6 57165463 57165731 chr6,57165463,57165731,-,L1M4,LINE,L1,-6061,1456,1182,57159402,57166912 +6 - chr6 57165731 57165840 chr6,57165731,57166032,-,Tigger3b,DNA,TcMar-Tigger,-120,1111,785,57165611,57166816 +2 - chr6 57170340 57171098 chr6,57170340,57171139,-,L2a,LINE,L2,0,3426,2554,57170340,57173692 +1 - chr6 57856035 57856217 chr6,57856035,57856217,-,L1MD2,LINE,L1,-5849,698,515,57850186,57856731 +6 - chr6 57856400 57856468 chr6,57856400,57856473,-,tRNA-Ala-GCY,tRNA,tRNA,-3,73,1,57856397,57856473 +1 - chr6 57902788 57902856 chr6,57902788,57902856,+,(ATAC)n,Simple_repeat,Simple_repeat,1,72,0,57902788,57902856 -6 + chr6 57902856 57902867 chr6,57902856,57902867,+,(ATATAC)n,Simple_repeat,Simple_repeat,3,88,0,57902854,57902867 -6 + chr6 57908688 57908721 chr6,57908688,57908721,+,(CA)n,Simple_repeat,Simple_repeat,1,33,0,57908688,57908721 -6 + chr6 57908866 57909261 chr6,57908866,57909261,+,MLT2B3,LTR,ERVL,133,535,-19,57908734,57909280 -6 + chr6 57909261 57909310 chr6,57909261,57909310,+,(TATGTA)n,Simple_repeat,Simple_repeat,1,49,0,57909261,57909310 -6 + chr6 57909331 57909404 chr6,57909331,57909404,+,MIRb,SINE,MIR,157,232,-36,57909175,57909440 -6 + chr6 57909864 57909928 chr6,57909864,57909928,-,U4,snRNA,snRNA,-81,64,1,57909783,57909928 +6 - chr6 57912162 57912201 chr6,57912162,57912201,+,(TG)n,Simple_repeat,Simple_repeat,1,39,0,57912162,57912201 -6 + chr6 57912255 57912654 chr6,57912255,57912654,-,LTR16B,LTR,ERVL,-30,433,1,57912225,57912654 +6 - chr6 57912737 57913122 chr6,57912737,57913122,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,57912737,57913122 -6 + chr6 57913226 57913617 chr6,57913226,57913617,-,L1MA10,LINE,L1,-740,5428,5061,57912486,57918677 +6 - chr6 57913600 57913911 chr6,57913600,57914511,+,L1MA10,LINE,L1,5420,6325,-9,57908181,57914520 -1 + chr6 57948932 57949265 chr6,57948932,57949265,+,MER90,LTR,ERV1,40,376,-199,57948893,57949464 -6 + chr6 57949272 57949828 chr6,57949272,57949828,-,MLT2A2,LTR,ERVL,0,554,1,57949272,57949828 +6 - chr6 57949829 57950032 chr6,57949829,57950032,+,MER90,LTR,ERV1,420,614,0,57949410,57950032 -6 + chr6 58187528 58187582 chr6,58187528,58187765,+,MIR,SINE,MIR,5,251,-11,58187524,58187776 +5 + chr6 61652255 61652295 chr6,61652221,61652295,-,L2a,LINE,L2,-1,3425,3348,61652220,61655642 +4 - chr6 63821253 63822112 chr6,63821253,63822112,+,LTR78,LTR,ERV1,1,1034,-270,63821253,63822382 +6 + chr6 63822112 63822411 chr6,63822112,63822411,-,AluSx,SINE,Alu,-11,301,1,63822101,63822411 -6 - chr6 63822411 63822613 chr6,63822411,63822613,+,LTR78,LTR,ERV1,1035,1269,-35,63821377,63822648 +6 + chr6 64377815 64377932 chr6,64377815,64378008,+,MIR,SINE,MIR,29,227,-35,64377787,64378043 +4 + chr6 67887646 67888662 chr6,67881436,67888662,-,HERVH-int,LTR,ERV1,0,7713,596,67881436,67889257 +5 - chr6 67888747 67888821 chr6,67888747,67888887,-,HERVH-int,LTR,ERV1,-7336,377,233,67881411,67889119 +2 - chr6 67889061 67889339 chr6,67889061,67889473,-,LTR7C,LTR,ERV1,0,471,25,67889061,67889497 +1 - chr6 68226979 68227145 chr6,68226979,68227145,-,MIRb,SINE,MIR,-19,211,27,68226960,68227171 +6 - chr6 68266500 68266615 chr6,68266364,68266617,+,AluSx4,SINE,Alu,21,273,-37,68266344,68266654 -3 + chr6 68326945 68327072 chr6,68326787,68327102,+,AluJb,SINE,Alu,1,305,-7,68326787,68327109 -3 + chr6 68629998 68630019 chr6,68629998,68630019,+,(AC)n,Simple_repeat,Simple_repeat,1,21,0,68629998,68630019 -6 + chr6 68634262 68634296 chr6,68634262,68634296,+,(GATA)n,Simple_repeat,Simple_repeat,1,35,0,68634262,68634296 -6 + chr6 70394887 70395013 chr6,70394625,70395013,+,MER48,LTR,ERV1,1,407,0,70394625,70395013 +1 + chr6 70596438 70596547 chr6,70596158,70596547,+,LTR16B,LTR,ERVL,1,461,-2,70596158,70596549 +1 + chr6 71221457 71221554 chr6,71221381,71221680,-,AluSx1,SINE,Alu,-29,283,2,71221352,71221681 +5 - chr6 71222646 71222715 chr6,71221883,71223110,+,L1MC4,LINE,L1,6784,8042,0,71215100,71223110 -3 + chr6 71229826 71229927 chr6,71229687,71230070,+,Tigger3,DNA,TcMar-Tigger,1998,2215,-814,71227690,71230884 -5 + chr6 71233513 71233591 chr6,71233342,71233591,-,L1MEi,LINE,L1,-1,2211,1948,71233341,71235538 +4 - chr6 71251358 71251409 chr6,71251299,71251409,-,MIR,SINE,MIR,-32,230,113,71251267,71251521 +5 - chr6 71253684 71254089 chr6,71253588,71254089,-,MER39,LTR,ERV1,0,707,1,71253588,71254089 +5 - chr6 71254089 71254193 chr6,71254089,71254193,-,MIR,SINE,MIR,-136,126,9,71253953,71254201 +6 - chr6 71281385 71281701 chr6,71281383,71281880,-,MLT1F,LTR,ERVL-MaLR,-50,498,1,71281333,71281880 +5 - chr6 71283774 71283865 chr6,71283521,71283865,+,L2c,LINE,L2,2939,3308,-79,71280583,71283944 -4 + chr6 71295545 71295713 chr6,71295494,71295713,+,MIRb,SINE,MIR,4,247,-21,71295491,71295734 -5 + chr6 71303014 71303045 chr6,71303014,71303319,+,MER2,DNA,TcMar-Tigger,2,344,-1,71303013,71303320 -2 + chr6 71310396 71310625 chr6,71310396,71310625,+,MIRb,SINE,MIR,1,240,-28,71310396,71310653 -1 + chr6 71311466 71311648 chr6,71311443,71311745,+,AluSx,SINE,Alu,1,300,-12,71311443,71311757 -1 + chr6 71313845 71314150 chr6,71313569,71314150,-,LTR81,LTR,Gypsy,0,1189,601,71313569,71314750 +4 - chr6 71314155 71314189 chr6,71314155,71314294,+,MIRb,SINE,MIR,3,164,-104,71314153,71314398 -2 + chr6 71326439 71326486 chr6,71326439,71326486,-,MIRb,SINE,MIR,-9,259,213,71326430,71326698 +6 - chr6 71328942 71328995 chr6,71328891,71329706,-,L2a,LINE,L2,-34,3392,2498,71328857,71332203 -1 - chr6 71329509 71329706 chr6,71328891,71329706,-,L2a,LINE,L2,-34,3392,2498,71328857,71332203 -1 - chr6 71344481 71344498 chr6,71344481,71344498,+,(CAT)n,Simple_repeat,Simple_repeat,1,17,0,71344481,71344498 -6 + chr6 71348527 71348555 chr6,71348495,71348555,-,FLAM_A,SINE,Alu,-11,131,72,71348484,71348626 +4 - chr6 71348571 71348610 chr6,71348571,71348729,+,Charlie4z,DNA,hAT-Charlie,16,165,-2,71348556,71348731 -2 + chr6 71373633 71374917 chr6,71373633,71374917,+,HSMAR2,DNA,TcMar-Mariner,1,1301,-1,71373633,71374918 -6 + chr6 71387768 71387807 chr6,71387768,71387807,+,(ATATTT)n,Simple_repeat,Simple_repeat,1,42,0,71387768,71387807 -6 + chr6 71387833 71387955 chr6,71387833,71387955,+,MIRc,SINE,MIR,37,169,-99,71387797,71388054 -6 + chr6 71388027 71388307 chr6,71388027,71388307,-,L2a,LINE,L2,-35,3391,3081,71387992,71391387 +6 - chr6 71389417 71389514 chr6,71389417,71389514,+,L2b,LINE,L2,3278,3374,-1,71386140,71389515 -6 + chr6 71389619 71389794 chr6,71389619,71389794,+,L3,LINE,CR1,2889,3087,-1012,71386731,71390806 -6 + chr6 71389794 71390106 chr6,71389794,71390106,+,AluSx3,SINE,Alu,1,309,-2,71389794,71390108 -6 + chr6 71390106 71390563 chr6,71390106,71390563,+,L3,LINE,CR1,3088,3498,-601,71387019,71391164 -6 + chr6 71390632 71390794 chr6,71390632,71390794,-,L2a,LINE,L2,-10,3416,3250,71390622,71394043 +6 - chr6 71414504 71414535 chr6,71414504,71414535,+,(AAAG)n,Simple_repeat,Simple_repeat,1,31,0,71414504,71414535 -6 + chr6 71415304 71415487 chr6,71415304,71415487,-,MIR3,SINE,MIR,-15,193,22,71415289,71415508 +6 - chr6 71415930 71416033 chr6,71415930,71416033,+,MIR,SINE,MIR,147,266,-2,71415784,71416035 -6 + chr6 71420192 71420226 chr6,71420192,71420226,+,(CGCGC)n,Simple_repeat,Simple_repeat,1,34,0,71420192,71420226 -6 + chr6 71420623 71420647 chr6,71420623,71420647,+,(AGG)n,Simple_repeat,Simple_repeat,1,26,0,71420623,71420647 -6 + chr6 71458479 71458671 chr6,71458479,71458920,+,LTR16B,LTR,ERVL,10,463,0,71458470,71458920 +5 + chr6 71458780 71458874 chr6,71458479,71458920,+,LTR16B,LTR,ERVL,10,463,0,71458470,71458920 +5 + chr6 72630495 72630554 chr6,72630440,72630554,-,L2b,LINE,L2,-16,3359,3240,72630424,72633793 -1 - chr6 72640734 72640800 chr6,72640675,72640800,-,MIR3,SINE,MIR,-13,195,64,72640662,72640863 -2 - chr6 72678354 72678469 chr6,72678263,72678469,-,MIRb,SINE,MIR,-26,242,6,72678237,72678474 -2 - chr6 73135004 73135027 chr6,73135004,73135114,+,L1ME4a,LINE,L1,5545,5646,-478,73129460,73135592 -2 + chr6 73135287 73135352 chr6,73135212,73135414,+,L1ME4a,LINE,L1,5937,6117,-7,73129276,73135421 -3 + chr6 73135702 73136075 chr6,73135702,73136075,-,MLT1B,LTR,ERVL-MaLR,0,390,4,73135702,73136078 +6 - chr6 73268051 73269436 chr6,73268047,73269436,-,LTR12C,LTR,ERV1,0,1579,3,73268047,73269438 -1 - chr6 73269436 73269530 chr6,73269436,73269530,-,AluSp,SINE,Alu,-219,94,1,73269217,73269530 -6 - chr6 73269716 73269740 chr6,73269716,73269740,+,(ATT)n,Simple_repeat,Simple_repeat,1,25,0,73269716,73269740 +6 + chr6 73269763 73270075 chr6,73269763,73270075,-,AluJo,SINE,Alu,-8,304,1,73269755,73270075 -6 - chr6 73270110 73270300 chr6,73270110,73270300,-,L1M5,LINE,L1,-1216,4930,4741,73268894,73275040 -6 - chr6 73270387 73270494 chr6,73270387,73270494,+,AluSx3,SINE,Alu,199,305,-6,73270189,73270500 +6 + chr6 73270497 73270527 chr6,73270497,73270603,-,MLT1C,LTR,ERVL-MaLR,-359,108,1,73270138,73270603 -4 - chr6 73275910 73276202 chr6,73275910,73276202,+,AluSx3,SINE,Alu,1,289,-22,73275910,73276224 +6 + chr6 73276204 73276517 chr6,73276204,73276517,+,AluSx,SINE,Alu,1,310,-2,73276204,73276519 +5 + chr6 73284658 73284687 chr6,73283938,73284687,+,LTR8B,LTR,ERV1,1,820,0,73283938,73284687 +2 + chr6 73299985 73300257 chr6,73299985,73300257,+,L2a,LINE,L2,2273,2586,-833,73297713,73301090 +6 + chr6 73300272 73300649 chr6,73300272,73300649,+,L2a,LINE,L2,3040,3424,-2,73297233,73300651 +6 + chr6 73300934 73301234 chr6,73300934,73301234,+,AluY,SINE,Alu,1,299,-12,73300934,73301246 +6 + chr6 73387637 73387717 chr6,73387607,73387769,-,AluSx,SINE,Alu,-28,284,124,73387579,73387892 -5 - chr6 73492025 73492122 chr6,73491834,73492122,+,AluSx3,SINE,Alu,1,300,-11,73491834,73492133 -5 + chr6 73492688 73492742 chr6,73492527,73492836,+,AluJb,SINE,Alu,1,309,-3,73492527,73492839 -1 + chr6 73524477 73524546 chr6,73524477,73524767,+,AluSx,SINE,Alu,1,290,-22,73524477,73524789 +4 + chr6 73693903 73694188 chr6,73693867,73694188,-,AluSq2,SINE,Alu,0,313,1,73693867,73694188 +5 - chr6 73694241 73694290 chr6,73694241,73694290,-,L2a,LINE,L2,0,3426,3378,73694241,73697667 +6 - chr6 73694429 73694600 chr6,73694429,73694600,+,L4_C_Mam,LINE,RTE-X,544,735,-4403,73693886,73699003 -6 + chr6 73694661 73694748 chr6,73694661,73694748,+,MER5A1,DNA,hAT-Charlie,67,166,0,73694595,73694748 -6 + chr6 73971426 73971724 chr6,73971426,73971724,-,AluSc,SINE,Alu,-11,298,1,73971415,73971724 -6 - chr6 73971825 73973115 chr6,73971825,73973299,+,L1P3,LINE,L1,7,1506,-4955,73971819,73978254 +5 + chr6 74530248 74530261 chr6,74530226,74530261,+,(AT)n,Simple_repeat,Simple_repeat,1,35,0,74530226,74530261 -5 + chr6 74530261 74530597 chr6,74530261,74532070,+,L1PREC2,LINE,L1,3338,5169,-977,74526924,74533047 -2 + chr6 74645582 74645640 chr6,74645542,74647877,+,L1M2b,LINE,L1,934,3444,-4711,74644609,74652588 -1 + chr6 74651863 74652002 chr6,74651863,74652062,+,MLT1K,LTR,ERVL-MaLR,394,595,0,74651470,74652062 +5 + chr6 74690337 74690671 chr6,74690263,74690671,-,MLT1K,LTR,ERVL-MaLR,-143,452,1,74690120,74690671 -2 - chr6 74734081 74734256 chr6,74733964,74734256,+,hAT-N1_Mam,DNA,hAT-Tip100?,16,339,-1,74733949,74734257 -4 + chr6 75290254 75290338 chr6,75290023,75290360,+,L2c,LINE,L2,3044,3378,-9,75286980,75290369 +3 + chr6 75291325 75291501 chr6,75291325,75291744,+,LTR84b,LTR,ERVL,287,755,-6,75291039,75291750 +5 + chr6 75296521 75296757 chr6,75296518,75296757,-,AluY,SINE,Alu,-31,280,41,75296487,75296797 -5 - chr6 75296931 75297003 chr6,75296931,75297066,-,L2a,LINE,L2,0,3426,3278,75296931,75300343 -5 - chr6 75384820 75384937 chr6,75384794,75385098,-,AluJr,SINE,Alu,-12,300,1,75384782,75385098 -3 - chr6 75386140 75386380 chr6,75385947,75386790,+,MamGypsy2-I,LTR,Gypsy,3169,4104,-62,75382779,75386852 +5 + chr6 75458162 75458236 chr6,75458162,75458346,+,MER20,DNA,hAT-Charlie,29,218,-1,75458134,75458347 +3 + chr6 76593527 76593623 chr6,76593231,76593631,+,L1PB1,LINE,L1,1,446,-6417,76593231,76600048 -1 + chr6 76774983 76775075 chr6,76774716,76775166,+,MER70A,LTR,ERVL,4,472,0,76774713,76775166 +1 + chr6 76775169 76775272 chr6,76775169,76775272,+,L1M6,LINE,L1,645,748,-5748,76774525,76781020 +6 + chr6 76775278 76775487 chr6,76775278,76775487,-,L1MEf,LINE,L1,-5981,219,18,76769297,76775504 -6 - chr6 78606000 78606036 chr6,78606000,78606188,+,L2,LINE,L2,2688,2884,-535,78603313,78606723 -1 + chr6 78809773 78809815 chr6,78809773,78809815,+,(TATTATA)n,Simple_repeat,Simple_repeat,1,44,0,78809773,78809815 -6 + chr6 78809841 78809943 chr6,78809841,78809943,-,L1MC,LINE,L1,-2344,5538,5436,78807497,78815378 +6 - chr6 78810303 78810493 chr6,78810303,78810493,-,LTR41C,LTR,ERVL,-526,175,1,78809777,78810493 +6 - chr6 78810604 78811036 chr6,78810604,78811036,+,MLT1H,LTR,ERVL-MaLR,1,410,-139,78810604,78811175 -6 + chr6 78811948 78812120 chr6,78811948,78812120,+,MER45A,DNA,hAT-Tip100,1,173,-5,78811948,78812125 -6 + chr6 79234606 79234648 chr6,79234606,79234648,+,(GCTGCC)n,Simple_repeat,Simple_repeat,1,42,0,79234606,79234648 +6 + chr6 79235440 79235735 chr6,79235440,79235735,+,L1ME1,LINE,L1,3618,3920,-2226,79231823,79237961 +6 + chr6 79235736 79235920 chr6,79235736,79235920,+,L1ME1,LINE,L1,5756,5949,-230,79229981,79236150 +6 + chr6 79236067 79236361 chr6,79236067,79236361,-,L1MC5a,LINE,L1,-1008,1769,1522,79235059,79237882 -6 - chr6 79420329 79420404 chr6,79420329,79420470,+,MLT1J1,LTR,ERVL-MaLR,281,418,-26,79420049,79420496 +4 + chr6 79561132 79561179 chr6,79560867,79561179,-,AluSp,SINE,Alu,0,313,1,79560867,79561179 -1 - chr6 79573877 79573931 chr6,79572764,79573931,-,L1MEd,LINE,L1,-2352,5433,4160,79570412,79578090 -1 - chr6 79573984 79574006 chr6,79573984,79574006,-,MLT1G,LTR,ERVL-MaLR,0,591,574,79573984,79574579 -6 - chr6 79574006 79574537 chr6,79574006,79574537,-,MER34A1,LTR,ERV1,0,587,2,79574006,79574538 -6 - chr6 79574537 79574572 chr6,79574537,79574572,-,MLT1G,LTR,ERVL-MaLR,-18,573,543,79574519,79575114 -6 - chr6 79574572 79574715 chr6,79574572,79574715,+,L1MB3,LINE,L1,6033,6175,-8,79568540,79574723 +6 + chr6 79574715 79575151 chr6,79574715,79575151,-,MLT1G,LTR,ERVL-MaLR,-49,542,5,79574666,79575155 -6 - chr6 79575193 79575279 chr6,79575193,79575279,-,L1MA8,LINE,L1,-199,6092,6007,79574994,79581285 -6 - chr6 79575283 79575514 chr6,79575283,79575514,-,L1MEd,LINE,L1,-3528,2618,2373,79571755,79577886 -6 - chr6 79575518 79575530 chr6,79575518,79575621,+,MER94,DNA,hAT-Blackjack,22,133,-1,79575497,79575622 +5 + chr6 79805896 79806048 chr6,79805710,79806078,-,LTR33,LTR,ERVL,-89,426,1,79805621,79806078 +3 - chr6 79807214 79807225 chr6,79806574,79807287,+,LTR12,LTR,ERV1,1,826,0,79806574,79807287 -1 + chr6 79874300 79874361 chr6,79874097,79874361,-,MER103C,DNA,hAT-Charlie,-17,280,1,79874080,79874361 -2 - chr6 79874397 79874493 chr6,79874397,79874493,+,MIRb,SINE,MIR,18,119,-149,79874380,79874642 +6 + chr6 80356395 80356548 chr6,80356395,80356548,+,L1ME4c,LINE,L1,521,672,-158,80355875,80356706 +6 + chr6 80440788 80440942 chr6,80440788,80440942,-,LFSINE_Vert,SINE,tRNA,-182,277,121,80440606,80441062 -6 - chr6 80453157 80453261 chr6,80453039,80453457,-,MLT1I,LTR,ERVL-MaLR,0,411,8,80453039,80453464 -1 - chr6 80467500 80467580 chr6,80467500,80467580,-,L2b,LINE,L2,-4,3371,3285,80467496,80470864 -6 - chr6 80467684 80467811 chr6,80467684,80467811,-,L2b,LINE,L2,-215,3160,3034,80467469,80470844 -6 - chr6 80467984 80468039 chr6,80467984,80468039,+,L2,LINE,L2,1525,1583,-1836,80466460,80469875 +6 + chr6 81527393 81527545 chr6,81527393,81527578,+,Tigger19b,DNA,TcMar-Tigger,141,325,-225,81527253,81527803 -2 + chr6 81534574 81534915 chr6,81534189,81534923,-,HAL1ME,LINE,L1,-938,1527,754,81533251,81535676 +1 - chr6 81551686 81551742 chr6,81551630,81551742,+,AmnSINE1,SINE,5S-Deu-L2,390,501,-74,81551241,81551816 +1 + chr6 81553429 81553518 chr6,81553429,81553518,+,L2c,LINE,L2,3268,3354,-33,81550162,81553551 +6 + chr6 81553829 81553953 chr6,81553829,81553953,+,(TA)n,Simple_repeat,Simple_repeat,1,124,0,81553829,81553953 +6 + chr6 81728257 81728392 chr6,81727824,81728402,+,L2a,LINE,L2,2774,3422,-4,81725051,81728406 -3 + chr6 81736250 81736343 chr6,81735845,81736343,+,LTR16D2,LTR,ERVL,50,569,-3,81735796,81736346 -4 + chr6 81813286 81813301 chr6,81813207,81813301,-,L2c,LINE,L2,-290,3097,2998,81812917,81816298 +5 - chr6 81813313 81813414 chr6,81813313,81813414,-,L2b,LINE,L2,-4,3422,3291,81813309,81816704 +6 - chr6 81845495 81845709 chr6,81845495,81845709,-,LTR33,LTR,ERVL,0,515,297,81845495,81846005 +6 - chr6 81969453 81969539 chr6,81968680,81969571,+,L2,LINE,L2,305,1263,-2156,81968376,81971727 -1 + chr6 82932601 82932639 chr6,82932411,82932839,-,L1MC4,LINE,L1,-5761,454,9,82926650,82932847 -1 - chr6 82938237 82938273 chr6,82938210,82938273,-,MIR3,SINE,MIR,-48,160,93,82938162,82938365 -2 - chr6 83983728 83983756 chr6,83982417,83984711,+,MER57-int,LTR,ERV1,4959,7318,-219,83977459,83984930 +1 + chr6 84006345 84006533 chr6,84006345,84006654,-,L2c,LINE,L2,-45,3342,3049,84006300,84009702 -4 - chr6 84006815 84006911 chr6,84006708,84006911,-,MIRb,SINE,MIR,-15,253,37,84006693,84006947 -2 - chr6 84024270 84024467 chr6,84024176,84024467,-,L3,LINE,CR1,-2,4097,3728,84024174,84028194 -2 - chr6 84470791 84470857 chr6,84470633,84470857,+,MIR,SINE,MIR,3,241,-21,84470631,84470878 -4 + chr6 84474827 84474889 chr6,84474695,84474889,-,MLT1D,LTR,ERVL-MaLR,-53,452,252,84474642,84475140 +4 - chr6 84689595 84689635 chr6,84689595,84689635,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,84689595,84689635 +6 + chr6 84689685 84689720 chr6,84689685,84689720,+,MIR3,SINE,MIR,151,185,-23,84689535,84689743 +6 + chr6 84694910 84694986 chr6,84694794,84694986,-,MIR,SINE,MIR,-16,246,55,84694778,84695040 -2 - chr6 84699644 84699800 chr6,84699337,84705492,+,L1PA4,LINE,L1,4,6155,0,84699334,84705492 +3 + chr6 85387219 85387367 chr6,85386622,85387367,+,L1MEd,LINE,L1,2304,2997,-3149,85384319,85390516 -5 + chr6 85387363 85387734 chr6,85387363,85387734,+,L1ME2z,LINE,L1,5795,6178,-266,85381569,85388000 -6 + chr6 85387743 85387856 chr6,85387743,85387856,+,L1MC5a,LINE,L1,2614,2725,-52,85385130,85387908 -6 + chr6 85387937 85387970 chr6,85387937,85387970,+,L2c,LINE,L2,3278,3310,-77,85384660,85388047 -6 + chr6 85387970 85388262 chr6,85387970,85388262,-,AluJb,SINE,Alu,-19,293,1,85387951,85388262 +6 - chr6 85388262 85388304 chr6,85388262,85388304,+,L2c,LINE,L2,3311,3348,-39,85384952,85388343 -6 + chr6 85388542 85388702 chr6,85388542,85388702,+,MIR3,SINE,MIR,34,204,-4,85388509,85388706 -6 + chr6 85388813 85388842 chr6,85388813,85388842,+,(ATGAGC)n,Simple_repeat,Simple_repeat,1,31,0,85388813,85388842 -6 + chr6 85388847 85388912 chr6,85388847,85388912,+,L2b,LINE,L2,3238,3300,-75,85385610,85388987 -6 + chr6 85388952 85389466 chr6,85388952,85389466,-,MLT1H,LTR,ERVL-MaLR,0,549,1,85388952,85389466 +6 - chr6 85390133 85390186 chr6,85390133,85390460,+,L2c,LINE,L2,3036,3381,-6,85387098,85390466 -1 + chr6 85498441 85498587 chr6,85498228,85498587,-,THE1B,LTR,ERVL-MaLR,0,364,1,85498228,85498587 +5 - chr6 85498587 85498919 chr6,85498587,85498919,-,MLT1A0,LTR,ERVL-MaLR,-16,349,4,85498571,85498922 +6 - chr6 85660975 85661227 chr6,85660975,85661227,-,L1MA5A,LINE,L1,-7,6290,6037,85660968,85667263 +5 - chr6 85661227 85661355 chr6,85661227,85661525,-,AluSp,SINE,Alu,-16,297,1,85661211,85661525 +2 - chr6 85663674 85663726 chr6,85663643,85663957,-,L2c,LINE,L2,-2836,583,231,85660807,85664187 +3 - chr6 85665560 85665588 chr6,85665298,85665588,-,AluJb,SINE,Alu,-14,298,2,85665284,85665589 +5 - chr6 85665811 85666104 chr6,85665811,85666104,-,AluSq,SINE,Alu,-20,293,1,85665791,85666104 +5 - chr6 85666106 85666147 chr6,85666106,85666263,+,MER2B,DNA,TcMar-Tigger,8,160,-176,85666099,85666439 -2 + chr6 87152051 87152069 chr6,87152051,87152069,+,(GGC)n,Simple_repeat,Simple_repeat,1,18,0,87152051,87152069 -6 + chr6 87152879 87152915 chr6,87152879,87152915,+,(GT)n,Simple_repeat,Simple_repeat,1,36,0,87152879,87152915 -6 + chr6 87153067 87153089 chr6,87153067,87153089,+,(A)n,Simple_repeat,Simple_repeat,1,22,0,87153067,87153089 -6 + chr6 87153228 87153337 chr6,87153228,87153337,+,L2c,LINE,L2,3278,3377,-10,87149951,87153347 -6 + chr6 87357924 87358012 chr6,87357924,87358012,+,L2a,LINE,L2,3336,3423,-3,87354589,87358015 +6 + chr6 87358211 87358306 chr6,87358211,87358306,+,L3b,LINE,CR1,4997,5097,-135,87353215,87358441 +6 + chr6 87358327 87358605 chr6,87358327,87358619,+,AluY,SINE,Alu,3,295,-16,87358325,87358635 +5 + chr6 88172281 88172608 chr6,88172281,88172608,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,88172281,88172608 +6 + chr6 88174141 88174482 chr6,88174141,88174482,+,MER20B,DNA,hAT-Charlie,15,352,-431,88174127,88174913 +6 + chr6 88174510 88174589 chr6,88174510,88174589,+,MER20B,DNA,hAT-Charlie,437,516,-267,88174074,88174856 +6 + chr6 88174675 88174717 chr6,88174675,88174717,+,MER20B,DNA,hAT-Charlie,719,756,-27,88173957,88174744 +6 + chr6 88174717 88175018 chr6,88174717,88175018,+,AluSq2,SINE,Alu,1,305,-8,88174717,88175026 +6 + chr6 88175018 88175047 chr6,88175018,88175047,+,MER20B,DNA,hAT-Charlie,757,783,0,88174262,88175047 +6 + chr6 88175619 88175745 chr6,88175619,88175745,+,L2a,LINE,L2,3287,3426,0,88172333,88175745 +6 + chr6 88324046 88324145 chr6,88324046,88324319,+,L1ME4c,LINE,L1,770,1072,-5424,88323277,88329743 -2 + chr6 88420944 88420974 chr6,88420266,88420974,-,HERV17-int,LTR,ERV1,-7922,704,2,88412344,88420975 +4 - chr6 88420974 88421033 chr6,88420974,88421507,-,LTR17,LTR,ERV1,0,780,256,88420974,88421762 +1 - chr6 88965587 88965820 chr6,88965587,88965820,-,AluJb,SINE,Alu,-20,292,31,88965567,88965850 -6 - chr6 88965820 88966146 chr6,88965820,88966146,+,MER61A,LTR,ERV1,1,341,0,88965820,88966146 +6 + chr6 88966148 88966587 chr6,88966148,88966708,+,MER61-int,LTR,ERV1,1396,1480,-3737,88964753,88970445 +5 + chr6 89080342 89080406 chr6,89080342,89080406,+,(TCCCCC)n,Simple_repeat,Simple_repeat,1,65,0,89080342,89080406 -6 + chr6 89560875 89560975 chr6,89560847,89560975,-,L2b,LINE,L2,-187,3200,3082,89560660,89564056 +5 - chr6 89675712 89675783 chr6,89675712,89675877,+,Charlie22a,DNA,hAT-Charlie,1,176,-315,89675712,89676192 +5 + chr6 89920196 89920216 chr6,89920180,89920216,-,MIRc,SINE,MIR,-117,151,109,89920063,89920324 -1 - chr6 89920216 89920315 chr6,89920216,89920512,+,AluSc,SINE,Alu,1,296,-13,89920216,89920525 +4 + chr6 90345976 90346010 chr6,90345625,90346010,+,LTR16,LTR,ERVL,1,394,-44,90345625,90346054 +2 + chr6 90360768 90360792 chr6,90360691,90360792,+,MIR1_Amn,SINE,MIR,93,198,-70,90360599,90360862 +2 + chr6 90361979 90362288 chr6,90361979,90362288,+,AluSg7,SINE,Alu,1,307,-2,90361979,90362290 +6 + chr6 91629916 91630229 chr6,91629916,91630371,-,L1PA10,LINE,L1,0,6168,5703,91629916,91636073 +2 - chr6 91685048 91685192 chr6,91684976,91685370,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,91684976,91685370 +3 - chr6 92387931 92388129 chr6,92387931,92388129,+,L3,LINE,CR1,3516,3718,-381,92384416,92388510 -6 + chr6 92388249 92388283 chr6,92388249,92388283,-,MLT2B1,LTR,ERVL,0,560,527,92388249,92388809 +6 - chr6 92388290 92388394 chr6,92388290,92388394,-,LTR12_,LTR,ERV1,-2,686,589,92388288,92388982 +6 - chr6 92388394 92388827 chr6,92388394,92389217,-,LTR12,LTR,ERV1,0,826,1,92388394,92389217 +1 - chr6 92723324 92723829 chr6,92723324,92725006,+,LTR12C,LTR,ERV1,3,1579,0,92723322,92725006 -1 + chr6 93070387 93070530 chr6,93069927,93070781,+,MamRep1527,LTR,LTR,92,969,0,93069836,93070781 +1 + chr6 93103146 93103384 chr6,93103146,93103442,+,AluY,SINE,Alu,1,296,-15,93103146,93103457 +5 + chr6 93811825 93812824 chr6,93810416,93812824,+,Tigger1,DNA,TcMar-Tigger,3,2418,0,93810414,93812824 +1 + chr6 94397710 94397927 chr6,94397710,94397927,-,MER103C,DNA,hAT-Charlie,-66,231,1,94397644,94397927 -6 - chr6 95575183 95575926 chr6,95575110,95575926,+,L1ME3D,LINE,L1,3829,4700,-1446,95571282,95577372 -5 + chr6 95576031 95576371 chr6,95576031,95576371,+,L1ME3D,LINE,L1,5024,5369,-777,95571008,95577148 -6 + chr6 95576358 95576443 chr6,95576358,95576443,+,L1ME3Cz,LINE,L1,157,255,-742,95576202,95577185 -6 + chr6 95576554 95576812 chr6,95576554,95576812,+,L1ME3D,LINE,L1,5943,6231,-11,95570612,95576823 -6 + chr6 95576832 95577168 chr6,95576832,95577168,+,Charlie15b,DNA,hAT-Charlie,712,1061,0,95576121,95577168 -6 + chr6 96358374 96358430 chr6,96358160,96358454,+,AluJb,SINE,Alu,1,303,-9,96358160,96358463 -5 + chr6 96361470 96361587 chr6,96361329,96361615,+,AluSz6,SINE,Alu,1,303,-9,96361329,96361624 -3 + chr6 96364771 96364807 chr6,96363614,96365596,+,L1MA9,LINE,L1,4460,6445,-1286,96359155,96366882 -3 + chr6 96519295 96519375 chr6,96519227,96519414,+,L2c,LINE,L2,3191,3387,0,96516037,96519414 -3 + chr6 97305594 97305634 chr6,97305594,97305634,+,(CTCTC)n,Simple_repeat,Simple_repeat,1,43,0,97305594,97305634 +6 + chr6 97309982 97310044 chr6,97309910,97310044,-,MER5A1,DNA,hAT-Charlie,-3,163,29,97309907,97310072 -2 - chr6 97711007 97711034 chr6,97711007,97711034,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,97711007,97711034 -6 + chr6 97717101 97717197 chr6,97717030,97717234,-,L1MEg,LINE,L1,-5510,574,373,97711520,97717606 +1 - chr6 97828131 97828206 chr6,97828131,97828349,+,MIR,SINE,MIR,7,236,-26,97828125,97828375 +4 + chr6 97938789 97938932 chr6,97938625,97938932,-,AluYe5,SINE,Alu,0,310,1,97938625,97938932 -1 - chr6 98210182 98210709 chr6,98210182,98210709,-,L1MB1,LINE,L1,-11,6157,5623,98210171,98216331 +6 - chr6 98210709 98210723 chr6,98210709,98211952,+,L1MB1,LINE,L1,4335,5606,-562,98206375,98212514 -2 + chr6 98292564 98292680 chr6,98292558,98292694,+,Tigger16a,DNA,TcMar-Tigger,816,952,-5,98291743,98292699 +3 + chr6 98294187 98294310 chr6,98294175,98294465,-,AluJr4,SINE,Alu,-20,292,3,98294155,98294467 -3 - chr6 98361338 98361412 chr6,98361210,98361447,-,MIR,SINE,MIR,0,262,10,98361210,98361456 -3 - chr6 98398471 98398627 chr6,98398381,98398627,-,MamRTE1,LINE,RTE-BovB,-302,3510,3257,98398079,98401883 -2 - chr6 98399404 98399575 chr6,98399404,98399575,-,L1ME4a,LINE,L1,-214,6164,5978,98399190,98405552 -6 - chr6 99430713 99430885 chr6,99430336,99430885,+,MLT1A0-int,LTR,ERVL-MaLR,691,1304,-83,99429646,99430968 +2 + chr6 99430903 99430946 chr6,99430903,99430946,+,MLT1I,LTR,ERVL-MaLR,355,403,-8,99430549,99430954 +6 + chr6 99431011 99431079 chr6,99431011,99431079,+,Charlie4z,DNA,hAT-Charlie,31,101,-66,99430981,99431145 +6 + chr6 99431090 99431220 chr6,99431090,99431220,+,L2,LINE,L2,53,230,-3189,99431038,99434409 +6 + chr6 99431277 99431373 chr6,99431277,99431424,+,L2a,LINE,L2,3217,3398,-28,99428061,99431452 +5 + chr6 99520981 99521025 chr6,99520981,99521025,+,(GCCGGAG)n,Simple_repeat,Simple_repeat,1,46,0,99520981,99521025 +6 + chr6 99521006 99521041 chr6,99521006,99521041,+,GA-rich,Low_complexity,Low_complexity,1,35,0,99521006,99521041 +6 + chr6 99526096 99526109 chr6,99526096,99526211,+,HY1,scRNA,scRNA,1,119,0,99526096,99526211 +4 + chr6 99587839 99587946 chr6,99587839,99587946,-,FLAM_A,SINE,Alu,-23,119,1,99587816,99587946 -6 - chr6 99588219 99588436 chr6,99588219,99588436,+,MSTA,LTR,ERVL-MaLR,203,417,-11,99588017,99588447 +6 + chr6 99588504 99588552 chr6,99588504,99588552,+,L2a,LINE,L2,3377,3424,-2,99585128,99588554 +6 + chr6 99588555 99588618 chr6,99588555,99588618,-,L2a,LINE,L2,-16,3410,3348,99588539,99591965 -6 - chr6 100016979 100017021 chr6,100016482,100017402,+,MER101-int,LTR,ERV1,3937,5545,-1053,100012546,100018455 +3 + chr6 100026075 100026384 chr6,100026024,100026429,+,LTR33,LTR,ERVL,22,515,0,100026003,100026429 +5 + chr6 100437306 100437365 chr6,100437306,100437365,-,X9_LINE,LINE,L1,-225,711,650,100437081,100438014 -6 - chr6 100882104 100882577 chr6,100882104,100882577,+,L3,LINE,CR1,3542,4086,-13,100878563,100882590 +6 + chr6 100882783 100882987 chr6,100882783,100883076,+,MER33,DNA,hAT-Charlie,1,324,0,100882783,100883076 +5 + chr6 104831303 104831324 chr6,104831303,104831609,+,AluSz6,SINE,Alu,2,307,-5,104831302,104831614 -2 + chr6 104936330 104936633 chr6,104936330,104936633,+,MLT1C,LTR,ERVL-MaLR,1,351,-116,104936330,104936749 -6 + chr6 104936636 104936682 chr6,104936636,104936683,+,MLT1B,LTR,ERVL-MaLR,301,347,-43,104936336,104936726 -2 + chr6 105136315 105136366 chr6,105136315,105136366,+,(CGGCCCT)n,Simple_repeat,Simple_repeat,1,52,0,105136315,105136366 +6 + chr6 105168731 105169135 chr6,105168548,105169135,+,MLT1E,LTR,ERVL-MaLR,2,649,-4,105168547,105169139 +5 + chr6 105169356 105169714 chr6,105169356,105169714,-,Charlie13a,DNA,hAT-Charlie,-371,1143,707,105168985,105170420 -6 - chr6 105169730 105169884 chr6,105169730,105169884,-,MIR,SINE,MIR,-48,182,14,105169682,105169897 -6 - chr6 105169896 105169945 chr6,105169896,105170558,-,Charlie13a,DNA,hAT-Charlie,-800,714,29,105169096,105170586 -5 - chr6 105273266 105273580 chr6,105273266,105273580,-,L1MB8,LINE,L1,-22,6156,5829,105273244,105279408 +6 - chr6 105280621 105280858 chr6,105280602,105280858,-,AluJb,SINE,Alu,-19,293,11,105280583,105280868 -2 - chr6 105280969 105281548 chr6,105280969,105281548,-,MLT1E2,LTR,ERVL-MaLR,-9,618,1,105280960,105281548 -6 - chr6 105619345 105619462 chr6,105619345,105619533,+,MIRb,SINE,MIR,34,239,-29,105619312,105619562 -2 + chr6 105621488 105621574 chr6,105621408,105621826,-,LTR33,LTR,ERVL,0,520,44,105621408,105621869 +3 - chr6 105629901 105629939 chr6,105629727,105629939,-,L2b,LINE,L2,-4,3371,3131,105629723,105633069 +4 - chr6 105632136 105632189 chr6,105632045,105632189,-,MamTip2,DNA,hAT-Tip100,-46,259,102,105631999,105632290 +4 - chr6 106100403 106100522 chr6,106100403,106100522,-,L1MC4,LINE,L1,0,8042,7924,106100403,106108445 -6 - chr6 106358566 106358707 chr6,106358294,106358707,+,L1ME3,LINE,L1,5391,5829,-333,106352904,106359040 -5 + chr6 106358707 106358779 chr6,106358707,106359034,+,AluJb,SINE,Alu,1,302,-10,106358707,106359044 -2 + chr6 106359518 106359593 chr6,106359299,106359593,-,AluSz,SINE,Alu,-27,285,1,106359272,106359593 +4 - chr6 106359681 106359717 chr6,106359681,106359768,+,L1ME3,LINE,L1,6082,6173,0,106353600,106359768 -1 + chr6 106695535 106695674 chr6,106695360,106695850,+,MLT1G1,LTR,ERVL-MaLR,10,579,0,106695351,106695850 +1 + chr6 106696334 106696400 chr6,106696334,106696641,+,AluSg,SINE,Alu,2,308,-2,106696333,106696643 +4 + chr6 106718071 106718210 chr6,106718071,106718210,+,MIR3,SINE,MIR,38,177,-31,106718034,106718241 -6 + chr6 106724570 106724660 chr6,106724570,106724697,+,MLT1E1A,LTR,ERVL-MaLR,1,130,-550,106724570,106725247 -5 + chr6 106725342 106725389 chr6,106725165,106725448,+,L1ME3,LINE,L1,4790,5073,-1073,106720376,106726521 -3 + chr6 106733982 106734077 chr6,106733614,106734506,+,MER97c,DNA,hAT-Tip100,3,764,-365,106733612,106734871 -3 + chr6 106735045 106735212 chr6,106734844,106735212,+,MER97c,DNA,hAT-Tip100,765,1128,-1,106734080,106735213 -5 + chr6 106735336 106735418 chr6,106735336,106735599,-,MER34A1,LTR,ERV1,0,587,318,106735336,106735916 +2 - chr6 106739701 106739864 chr6,106739555,106739864,+,MamGypLTR2c,LTR,Gypsy,641,952,-116,106738915,106739980 -1 + chr6 106740063 106740087 chr6,106740063,106740241,+,AluSz6,SINE,Alu,137,312,0,106739927,106740241 -1 + chr6 106745150 106745775 chr6,106745150,106745775,+,LTR82A,LTR,ERVL,169,805,-67,106744982,106745842 -6 + chr6 106745831 106746004 chr6,106745831,106746027,-,L2b,LINE,L2,0,3375,3180,106745831,106749206 +1 - chr6 106755870 106755990 chr6,106755846,106756013,+,AluJb,SINE,Alu,135,302,-10,106755712,106756023 -3 + chr6 106770126 106770461 chr6,106770022,106770461,-,L1MEf,LINE,L1,-5207,993,550,106764815,106771010 +5 - chr6 106770461 106770664 chr6,106770461,106770664,+,MER3,DNA,hAT-Charlie,1,209,0,106770461,106770664 -6 + chr6 106770664 106770740 chr6,106770664,106770740,-,L1MEf,LINE,L1,-5641,559,476,106765023,106771215 +6 - chr6 106770879 106771342 chr6,106770879,106771342,-,L1MEf,LINE,L1,-5604,490,30,106765275,106771371 +6 - chr6 106771631 106772120 chr6,106771631,106772120,-,MLT1K,LTR,ERVL-MaLR,-26,569,79,106771605,106772198 +5 - chr6 106774655 106774760 chr6,106774655,106774760,+,MER5A1,DNA,hAT-Charlie,57,166,0,106774599,106774760 -6 + chr6 106774792 106775004 chr6,106774792,106775067,+,MER20B,DNA,hAT-Charlie,8,275,-508,106774785,106775575 -1 + chr6 107698518 107698594 chr6,107698518,107698594,+,GA-rich,Low_complexity,Low_complexity,1,77,0,107698518,107698594 -6 + chr6 107698793 107698878 chr6,107698793,107698878,-,MIR3,SINE,MIR,-24,184,97,107698769,107698974 +6 - chr6 107698945 107699025 chr6,107698945,107699025,+,L3,LINE,CR1,4017,4097,-2,107694929,107699027 -6 + chr6 107699125 107699166 chr6,107699125,107699166,+,MARNA,DNA,TcMar-Mariner,62,102,-484,107699064,107699650 -6 + chr6 107699324 107699442 chr6,107699324,107699442,+,MARNA,DNA,TcMar-Mariner,273,389,-197,107699052,107699639 -6 + chr6 107958111 107958194 chr6,107958111,107958194,+,(GCC)n,Simple_repeat,Simple_repeat,1,86,0,107958111,107958194 +6 + chr6 107958653 107958810 chr6,107958653,107958810,+,AluSg,SINE,Alu,1,157,-153,107958653,107958963 +6 + chr6 107958904 107959154 chr6,107958904,107959154,+,AluSg,SINE,Alu,1,265,-45,107958904,107959199 +6 + chr6 107959255 107959463 chr6,107959255,107959463,-,MIRb,SINE,MIR,-39,229,13,107959216,107959475 -6 - chr6 108030600 108030718 chr6,108030600,108030739,-,MIRb,SINE,MIR,-99,169,2,108030501,108030740 +1 - chr6 108157781 108157808 chr6,108157781,108157808,+,(CCG)n,Simple_repeat,Simple_repeat,1,28,0,108157781,108157808 +6 + chr6 108158081 108158141 chr6,108158081,108158141,+,MIR1_Amn,SINE,MIR,94,151,-79,108157988,108158220 +6 + chr6 108275642 108275676 chr6,108275550,108275676,-,MamTip3,DNA,hAT-Tip100,-22,478,347,108275528,108276022 -1 - chr6 108275714 108275849 chr6,108275714,108275849,-,AluJr,SINE,Alu,-179,133,1,108275535,108275849 -6 - chr6 108276130 108276303 chr6,108276121,108276303,+,LTR16B2,LTR,ERVL,1,178,-284,108276121,108276587 +2 + chr6 108359084 108359204 chr6,108358947,108359204,+,ORSL,DNA,hAT-Tip100,1,275,0,108358947,108359204 -5 + chr6 108359204 108359458 chr6,108359204,108359458,+,L3,LINE,CR1,2110,2411,-1688,108357095,108361146 -6 + chr6 108359506 108359536 chr6,108359506,108359536,+,(ATTC)n,Simple_repeat,Simple_repeat,1,30,0,108359506,108359536 -6 + chr6 108359548 108359739 chr6,108359548,108359739,+,MLT1M,LTR,ERVL-MaLR,95,289,-383,108359454,108360122 -6 + chr6 108766996 108767110 chr6,108766878,108767110,-,AluJb,SINE,Alu,-5,297,1,108766873,108767110 -2 - chr6 108767280 108767310 chr6,108767280,108767310,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,108767280,108767310 +6 + chr6 108768719 108768846 chr6,108768719,108768846,-,MIRc,SINE,MIR,-91,177,43,108768628,108768888 -6 - chr6 108769176 108769408 chr6,108769176,108769408,+,MLT1K,LTR,ERVL-MaLR,1,251,-344,108769176,108769752 +6 + chr6 108769816 108769942 chr6,108769816,108769980,+,L1ME4b,LINE,L1,36,105,-6295,108769781,108776275 +5 + chr6 108924061 108924103 chr6,108923973,108924235,-,L2c,LINE,L2,-16,3371,3110,108923957,108927344 +1 - chr6 109383252 109383307 chr6,109383252,109383307,-,MIR3,SINE,MIR,-55,153,97,109383197,109383403 -6 - chr6 109487906 109488035 chr6,109487859,109488035,+,LTR33,LTR,ERVL,8,176,-339,109487852,109488374 +1 + chr6 109826541 109826596 chr6,109826541,109826596,+,L3,LINE,CR1,4043,4098,-1,109822499,109826597 +6 + chr6 110478152 110478228 chr6,110478152,110478228,+,L2c,LINE,L2,3278,3350,-37,110474875,110478265 +6 + chr6 110478486 110478662 chr6,110478486,110478662,+,MamTip2,DNA,hAT-Tip100,51,235,-70,110478436,110478732 +6 + chr6 110478955 110479070 chr6,110478955,110479070,+,L1M4,LINE,L1,3386,3505,-2641,110475570,110481711 +6 + chr6 110479070 110479436 chr6,110479070,110479482,+,MSTB,LTR,ERVL-MaLR,1,426,0,110479070,110479482 +5 + chr6 111231481 111231546 chr6,111231355,111231549,-,Tigger19a,DNA,TcMar-Tigger,-28,295,93,111231327,111231641 +3 - chr6 111233999 111234083 chr6,111233924,111234354,+,L2a,LINE,L2,2610,3139,-287,111231315,111234641 -3 + chr6 111278442 111278742 chr6,111278442,111278791,+,THE1B,LTR,ERVL-MaLR,1,362,-2,111278442,111278793 +5 + chr6 111297126 111297337 chr6,111297048,111297337,+,AluSz,SINE,Alu,1,291,-21,111297048,111297358 +1 + chr6 111309203 111309766 chr6,111308930,111309766,-,LTR1A2,LTR,ERV1,0,837,1,111308930,111309766 -1 - chr6 111310380 111310644 chr6,111310380,111310644,+,AluJb,SINE,Alu,5,282,-30,111310376,111310674 +6 + chr6 111311809 111312103 chr6,111311809,111312103,-,AluSc8,SINE,Alu,-14,297,1,111311795,111312103 -6 - chr6 111312560 111312857 chr6,111312560,111312857,-,AluSz,SINE,Alu,-12,300,1,111312548,111312857 -6 - chr6 111313041 111313180 chr6,111313041,111313180,+,AluJb,SINE,Alu,162,300,-12,111312880,111313192 +6 + chr6 111360641 111360721 chr6,111360470,111360776,-,AluJr,SINE,Alu,-7,305,1,111360463,111360776 +5 - chr6 111361307 111361408 chr6,111361101,111361408,+,AluSx,SINE,Alu,1,307,-5,111361101,111361413 -4 + chr6 111361419 111361447 chr6,111361419,111361447,+,(A)n,Simple_repeat,Simple_repeat,1,28,0,111361419,111361447 -6 + chr6 111483719 111483779 chr6,111483719,111483779,+,(GCGG)n,Simple_repeat,Simple_repeat,1,62,0,111483719,111483779 +6 + chr6 111484652 111484695 chr6,111484607,111484695,+,MIR3,SINE,MIR,13,107,-101,111484595,111484796 +1 + chr6 111490979 111491096 chr6,111490979,111491096,-,AluJo,SINE,Alu,-194,118,2,111490785,111491097 -6 - chr6 111491103 111491392 chr6,111491103,111491392,-,AluJb,SINE,Alu,-22,290,1,111491081,111491392 -6 - chr6 111491493 111491657 chr6,111491493,111491657,+,MER20,DNA,hAT-Charlie,1,219,0,111491493,111491657 +6 + chr6 111491837 111491905 chr6,111491837,111491905,+,L2a,LINE,L2,3351,3426,0,111488487,111491905 +6 + chr6 111492249 111492417 chr6,111492249,111492417,-,LTR86A1,LTR,ERVL,0,513,329,111492249,111492745 -6 - chr6 111492487 111492772 chr6,111492487,111492772,+,AluJo,SINE,Alu,1,288,-24,111492487,111492796 +6 + chr6 111576390 111576709 chr6,111576390,111576709,+,LTR67B,LTR,ERVL,146,471,-149,111576245,111576858 +5 + chr6 111576719 111576875 chr6,111576719,111576875,+,L1ME3Cz,LINE,L1,832,997,0,111575888,111576875 +5 + chr6 111577037 111577079 chr6,111577037,111577079,+,(AATATT)n,Simple_repeat,Simple_repeat,1,42,0,111577037,111577079 +6 + chr6 111577135 111577160 chr6,111577135,111577165,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,111577135,111577165 +5 + chr6 111586993 111587005 chr6,111586902,111587005,-,MIRb,SINE,MIR,0,268,172,111586902,111587176 -2 - chr6 111598220 111598302 chr6,111598220,111598772,+,L1ME4b,LINE,L1,260,891,-1,111597961,111598773 +5 + chr6 111599915 111600168 chr6,111599915,111600168,+,MIR,SINE,MIR,13,259,-3,111599903,111600171 +6 + chr6 111600302 111600529 chr6,111600302,111600529,-,MIRc,SINE,MIR,-14,248,9,111600288,111600537 -6 - chr6 111600534 111600749 chr6,111600534,111600749,-,MER58C,DNA,hAT-Charlie,0,215,8,111600534,111600756 -6 - chr6 111600830 111601081 chr6,111600830,111601081,-,MIR,SINE,MIR,0,262,13,111600830,111601093 -6 - chr6 111601299 111601464 chr6,111601299,111601464,+,CR1-16_AMi,LINE,CR1,307,492,-359,111600993,111601823 +6 + chr6 111900530 111900614 chr6,111900530,111900614,+,HAL1,LINE,L1,47,137,-2370,111900484,111902984 -6 + chr6 111901771 111901851 chr6,111901771,111902096,+,L1MC3,LINE,L1,7458,7785,0,111894314,111902096 -1 + chr6 112164042 112164156 chr6,112163416,112164619,-,L2a,LINE,L2,-1208,2202,698,112162208,112165316 -3 - chr6 112217707 112217882 chr6,112217707,112217882,+,L3b,LINE,CR1,4825,5016,-216,112212883,112218098 -6 + chr6 112217960 112218015 chr6,112217960,112218015,+,(ATATAG)n,Simple_repeat,Simple_repeat,1,55,0,112217960,112218015 -6 + chr6 112218082 112218133 chr6,112218082,112218133,-,MER112,DNA,hAT-Charlie,-188,73,23,112217894,112218155 +6 - chr6 112218302 112218361 chr6,112218302,112218361,-,L1MC3,LINE,L1,0,7785,7727,112218302,112226087 +6 - chr6 112218362 112218419 chr6,112218362,112218419,-,MER5B,DNA,hAT-Charlie,-117,61,4,112218245,112218422 +6 - chr6 112218425 112218470 chr6,112218425,112218470,+,MIR,SINE,MIR,216,259,-3,112218210,112218473 -6 + chr6 112219550 112219570 chr6,112219550,112219603,+,(TAATGA)n,Simple_repeat,Simple_repeat,1,54,0,112219550,112219603 -1 + chr6 112236093 112236273 chr6,112236092,112236273,+,MIR3,SINE,MIR,16,205,-3,112236077,112236276 +1 + chr6 112236282 112236442 chr6,112236282,112236442,+,MIRc,SINE,MIR,65,236,-32,112236218,112236474 +6 + chr6 112277180 112277311 chr6,112277155,112277464,-,AluSx,SINE,Alu,-9,303,1,112277146,112277464 -3 - chr6 112283083 112283130 chr6,112283083,112283130,+,L2b,LINE,L2,3329,3375,0,112279755,112283130 +6 + chr6 112283474 112283527 chr6,112283474,112283655,-,MER5B,DNA,hAT-Charlie,0,178,2,112283474,112283656 -4 - chr6 112292084 112292292 chr6,112291907,112292292,+,L2,LINE,L2,2093,2487,-932,112289815,112293224 +2 + chr6 112292432 112292813 chr6,112292432,112292813,+,L1MD3,LINE,L1,7583,7982,-13,112284850,112292826 +6 + chr6 112343615 112343657 chr6,112343615,112343657,+,GA-rich,Low_complexity,Low_complexity,1,42,0,112343615,112343657 +6 + chr6 112345039 112345299 chr6,112345010,112345299,-,AluSg7,SINE,Alu,-5,304,16,112345005,112345314 -2 - chr6 112345299 112345321 chr6,112345299,112346107,+,L1MA7,LINE,L1,5467,6232,-59,112339833,112346166 +5 + chr6 112476724 112476830 chr6,112476724,112476830,+,U13_,snRNA,snRNA,1,108,0,112476724,112476830 -6 + chr6 113357003 113357298 chr6,113356934,113357568,-,MER39B,LTR,ERV1,0,653,1,113356934,113357568 +5 - chr6 113362543 113362670 chr6,113362543,113362687,+,MIRc,SINE,MIR,3,156,-112,113362541,113362799 -2 + chr6 113367932 113367944 chr6,113367932,113368069,-,MIRb,SINE,MIR,-110,158,4,113367822,113368072 +1 - chr6 113428823 113428859 chr6,113428823,113428859,+,U2,snRNA,snRNA,1,36,-152,113428823,113429011 -6 + chr6 113531118 113531258 chr6,113531117,113537147,+,L1PA2,LINE,L1,125,6153,-2,113530993,113537149 +1 + chr6 113543403 113543535 chr6,113543381,113543535,-,L1ME4a,LINE,L1,-4,6120,5971,113543377,113549505 -2 - chr6 113543622 113543793 chr6,113543622,113543927,-,L1ME4a,LINE,L1,-293,5831,5516,113543329,113549442 -5 - chr6 113623779 113623822 chr6,113623727,113624010,+,AluJr4,SINE,Alu,23,296,-16,113623705,113624026 -5 + chr6 113868013 113868077 chr6,113867790,113868077,-,L1MC5,LINE,L1,-110,9194,8914,113867680,113876990 +5 - chr6 113868077 113868555 chr6,113868077,113868555,+,MLT2B2,LTR,ERVL,1,515,0,113868077,113868555 -6 + chr6 113868555 113868977 chr6,113868555,113868977,-,L1MC5,LINE,L1,-391,8913,8474,113868164,113877450 +6 - chr6 113868984 113869034 chr6,113868984,113869034,-,MER66B,LTR,ERV1,-141,345,295,113868843,113869328 +6 - chr6 113869057 113869190 chr6,113869057,113869190,-,FLAM_C,SINE,Alu,-10,133,1,113869047,113869190 +6 - chr6 113869198 113869353 chr6,113869198,113869353,-,L1MC5,LINE,L1,-824,8480,8333,113868374,113877685 +6 - chr6 113869353 113869689 chr6,113869353,113869689,+,THE1B,LTR,ERVL-MaLR,1,364,0,113869353,113869689 -6 + chr6 113869689 113869754 chr6,113869689,113869754,-,L1MC5,LINE,L1,-972,8332,8272,113868717,113878025 +6 - chr6 113872994 113873034 chr6,113872907,113873034,-,L1MA10,LINE,L1,-2,6332,6199,113872905,113879232 +4 - chr6 113873034 113873351 chr6,113873034,113873571,-,MLT1G,LTR,ERVL-MaLR,-69,522,1,113872965,113873571 +1 - chr6 113916943 113917052 chr6,113916532,113917273,-,L1ME1,LINE,L1,-90,6089,5256,113916442,113922528 -3 - chr6 113971648 113971672 chr6,113971648,113971672,+,(TTA)n,Simple_repeat,Simple_repeat,1,24,0,113971648,113971672 +6 + chr6 113991893 113992176 chr6,113991840,113992176,-,MLT1L,LTR,ERVL-MaLR,-178,364,1,113991662,113992176 -2 - chr6 113993343 113993487 chr6,113993108,113993534,+,MLT1J2,LTR,ERVL-MaLR,3,446,-2,113993106,113993536 +5 + chr6 113995615 113995700 chr6,113995615,113995700,+,MER5A,DNA,hAT-Charlie,1,84,-105,113995615,113995805 +5 + chr6 114059472 114059788 chr6,114059472,114059836,+,THE1D,LTR,ERVL-MaLR,1,381,0,114059472,114059836 +5 + chr6 114088937 114088969 chr6,114088876,114088969,-,MIR3,SINE,MIR,-15,193,100,114088861,114089068 -2 - chr6 114088997 114089019 chr6,114088997,114089075,+,L2b,LINE,L2,3295,3375,0,114085703,114089075 +4 + chr6 114112386 114112490 chr6,114112109,114112557,+,MLT1D,LTR,ERVL-MaLR,8,504,-1,114112102,114112558 +1 + chr6 114143619 114143918 chr6,114143509,114144047,+,MER65B,LTR,ERV1,1,523,-8,114143509,114144055 +5 + chr6 114179135 114179157 chr6,114179135,114179270,+,L2a,LINE,L2,3303,3425,-1,114175833,114179271 +4 + chr6 114231348 114231441 chr6,114230974,114231515,+,MSTA,LTR,ERVL-MaLR,1,428,0,114230974,114231515 +1 + chr6 114251534 114251919 chr6,114251534,114251971,+,MLT1K,LTR,ERVL-MaLR,108,608,-2,114251427,114251973 +5 + chr6 114406643 114406668 chr6,114406625,114407008,-,L1PB1,LINE,L1,0,6151,5745,114406625,114412752 -3 - chr6 114425612 114425672 chr6,114424805,114427844,-,HERVH-int,LTR,ERV1,-4726,2987,1,114420079,114427844 -1 - chr6 114437998 114438066 chr6,114437998,114438152,+,MER5A,DNA,hAT-Charlie,2,124,-65,114437997,114438217 +4 + chr6 114455857 114456037 chr6,114455741,114456037,+,LTR33B,LTR,ERVL,7,339,-164,114455735,114456201 +2 + chr6 114456247 114456512 chr6,114456247,114456512,+,MIR,SINE,MIR,1,241,-21,114456247,114456533 +6 + chr6 114471415 114471506 chr6,114471388,114471506,+,L2,LINE,L2,2335,2453,-966,114469054,114472472 +2 + chr6 114471506 114471705 chr6,114471506,114472082,+,MLT2B3,LTR,ERVL,3,554,0,114471504,114472082 +5 + chr6 114477358 114477471 chr6,114477358,114477471,-,MIRc,SINE,MIR,-122,146,16,114477236,114477486 +6 - chr6 114481923 114482041 chr6,114481923,114482041,+,(TCTTT)n,Simple_repeat,Simple_repeat,1,121,0,114481923,114482041 -6 + chr6 116244278 116244310 chr6,116244278,116244310,+,(ACTCAC)n,Simple_repeat,Simple_repeat,1,32,0,116244278,116244310 -6 + chr6 116244322 116244368 chr6,116244322,116244505,+,MER5A,DNA,hAT-Charlie,1,189,0,116244322,116244505 -2 + chr6 116244490 116244505 chr6,116244322,116244505,+,MER5A,DNA,hAT-Charlie,1,189,0,116244322,116244505 -4 + chr6 116244517 116244626 chr6,116244517,116244626,-,MER5B,DNA,hAT-Charlie,-73,105,1,116244444,116244626 +6 - chr6 116255137 116255186 chr6,116255137,116255186,+,A-rich,Low_complexity,Low_complexity,1,49,0,116255137,116255186 +6 + chr6 116256031 116256125 chr6,116256031,116256125,-,MIR,SINE,MIR,-97,171,66,116255934,116256190 -6 - chr6 116256257 116256537 chr6,116256257,116256537,-,Tigger3a,DNA,TcMar-Tigger,-54,294,1,116256203,116256537 -6 - chr6 116256689 116256726 chr6,116256689,116256726,+,(ATTTAA)n,Simple_repeat,Simple_repeat,1,37,0,116256689,116256726 +6 + chr6 116280199 116280260 chr6,116280197,116280311,-,L1MEc,LINE,L1,-6246,154,29,116273951,116280339 -1 - chr6 116366083 116366286 chr6,116366056,116366286,-,MIRb,SINE,MIR,-27,241,10,116366029,116366295 -2 - chr6 116366345 116366430 chr6,116366345,116366430,-,L2c,LINE,L2,-19,3368,3285,116366326,116369714 -6 - chr6 116366705 116366830 chr6,116366705,116366830,+,MIRc,SINE,MIR,3,140,-128,116366703,116366958 +6 + chr6 116444319 116444425 chr6,116444319,116444425,+,L2b,LINE,L2,3251,3361,-14,116441069,116444439 +6 + chr6 116444435 116444499 chr6,116444435,116444499,+,(AATG)n,Simple_repeat,Simple_repeat,1,65,0,116444435,116444499 +6 + chr6 116444542 116444860 chr6,116444542,116444908,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,116444542,116444908 +5 + chr6 116460772 116460942 chr6,116460772,116460942,-,MIRb,SINE,MIR,-52,216,15,116460720,116460956 +6 - chr6 116494804 116494925 chr6,116494790,116494961,-,AluJr,SINE,Alu,-20,292,120,116494770,116495080 -3 - chr6 119031405 119031541 chr6,119031210,119031583,+,MLT1A,LTR,ERVL-MaLR,1,370,-4,119031210,119031587 +5 + chr6 122437101 122437175 chr6,122437101,122437175,+,L1MCa,LINE,L1,1838,1917,-4591,122435264,122441766 -6 + chr6 122437175 122437202 chr6,122437175,122437202,+,(TG)n,Simple_repeat,Simple_repeat,1,27,0,122437175,122437202 -6 + chr6 122437202 122437916 chr6,122437202,122437916,+,L1MCa,LINE,L1,1918,2689,-3632,122435285,122441548 -6 + chr6 122437916 122438321 chr6,122437916,122438321,+,MSTA,LTR,ERVL-MaLR,1,422,-6,122437916,122438327 -6 + chr6 122438327 122438375 chr6,122438327,122438375,+,MSTA-int,LTR,ERVL-MaLR,1,48,-1603,122438327,122439978 -6 + chr6 122438375 122438981 chr6,122438375,122438981,+,L1PA14,LINE,L1,1595,2270,-4419,122436781,122443400 -6 + chr6 122438981 122439223 chr6,122438981,122439818,+,MSTA-int,LTR,ERVL-MaLR,745,1651,0,122438237,122439818 -1 + chr6 122478794 122479199 chr6,122478794,122479199,-,L1P3,LINE,L1,-6043,418,10,122472751,122479208 -6 - chr6 122480042 122480341 chr6,122480042,122480341,-,AluYm1,SINE,Alu,-12,299,1,122480030,122480341 -6 - chr6 122481053 122481814 chr6,122481053,122481814,+,L1MC4,LINE,L1,7286,8035,-7,122473768,122481821 +6 + chr6 122481961 122482259 chr6,122481961,122482259,-,AluYe5,SINE,Alu,-13,297,2,122481948,122482260 -6 - chr6 122482277 122482536 chr6,122482277,122482536,-,LTR35B,LTR,ERV1,-78,527,183,122482199,122482718 -6 - chr6 122482544 122482848 chr6,122482544,122482848,-,AluSg,SINE,Alu,-7,303,1,122482537,122482848 -6 - chr6 122483436 122483975 chr6,122483436,122483975,-,MER34A1,LTR,ERV1,-7,580,4,122483429,122483978 -6 - chr6 122483998 122484115 chr6,122483998,122484115,+,L2b,LINE,L2,3253,3375,0,122480746,122484115 +6 + chr6 122643388 122643425 chr6,122643388,122643425,-,tRNA-Gly-GGA,tRNA,tRNA,-37,38,2,122643351,122643426 -1 - chr6 122644083 122644233 chr6,122644083,122644233,-,MamRTE1,LINE,RTE-BovB,-222,3590,3441,122643861,122647673 -6 - chr6 122644412 122644638 chr6,122644412,122644638,+,MIR,SINE,MIR,20,247,-15,122644393,122644653 +6 + chr6 123429191 123429225 chr6,123429191,123429360,+,MIRb,SINE,MIR,65,241,-27,123429127,123429387 +4 + chr6 123442115 123442276 chr6,123442115,123442276,+,MIRb,SINE,MIR,1,162,-106,123442115,123442382 +6 + chr6 123442276 123442326 chr6,123442276,123442575,+,AluYi6,SINE,Alu,16,311,0,123442261,123442575 +5 + chr6 123445005 123445161 chr6,123443656,123445260,-,L1PA3,LINE,L1,-1130,5016,3412,123442526,123448671 -5 - chr6 123469716 123469773 chr6,123469716,123469773,+,(CAGAGC)n,Simple_repeat,Simple_repeat,1,57,0,123469716,123469773 +6 + chr6 123469826 123469855 chr6,123469826,123469855,+,GA-rich,Low_complexity,Low_complexity,1,29,0,123469826,123469855 +6 + chr6 123470218 123470313 chr6,123470218,123470313,-,L2c,LINE,L2,-49,3338,3250,123470169,123473562 -6 - chr6 123470305 123470402 chr6,123470305,123470402,+,MIRb,SINE,MIR,101,201,-67,123470205,123470469 +6 + chr6 123470448 123470596 chr6,123470448,123470596,-,L2a,LINE,L2,-104,3322,3152,123470344,123473747 -6 - chr6 123470645 123470858 chr6,123470645,123470858,-,L2a,LINE,L2,-503,2916,2672,123470142,123473529 -6 - chr6 123470865 123471121 chr6,123470865,123471121,-,L2a,LINE,L2,0,3426,3149,123470865,123474269 -6 - chr6 123471122 123471256 chr6,123471122,123471256,-,L2a,LINE,L2,-748,2671,2533,123470374,123473788 -6 - chr6 123828787 123828901 chr6,123828556,123828901,+,L2b,LINE,L2,2824,3185,-202,123825733,123829103 +2 + chr6 123828938 123829000 chr6,123828938,123829000,+,MIRb,SINE,MIR,194,253,-15,123828745,123829015 +6 + chr6 123828945 123829014 chr6,123828945,123829014,+,L2b,LINE,L2,3317,3421,-5,123825629,123829019 +6 + chr6 123829175 123829285 chr6,123829175,123829365,+,L2c,LINE,L2,2255,2443,-976,123826921,123830341 +5 + chr6 124909093 124910159 chr6,124908242,124910159,-,L1MB8,LINE,L1,-1,6177,4256,124908241,124914414 +5 - chr6 124910593 124910696 chr6,124910593,124910696,-,L2c,LINE,L2,-1,3386,3281,124910592,124913976 +6 - chr6 124911342 124911633 chr6,124911342,124911633,+,AluSc,SINE,Alu,1,292,-17,124911342,124911650 -6 + chr6 124911643 124911963 chr6,124911643,124911963,-,MER1B,DNA,hAT-Charlie,0,339,1,124911643,124911963 +6 - chr6 124912552 124912644 chr6,124912552,124912644,+,MIR3,SINE,MIR,81,173,-35,124912472,124912679 -6 + chr6 124920188 124920248 chr6,124920088,124921738,-,THE1B-int,LTR,ERVL-MaLR,0,1580,1,124920088,124921738 +3 - chr6 124931728 124931738 chr6,124931728,124931960,+,MIRc,SINE,MIR,26,268,0,124931703,124931960 -2 + chr6 124935008 124935117 chr6,124934924,124935308,-,THE1D,LTR,ERVL-MaLR,0,381,1,124934924,124935308 +3 - chr6 124945299 124945439 chr6,124944562,124946136,-,L1ME2z,LINE,L1,-4450,1792,139,124940112,124946274 +3 - chr6 124962858 124962923 chr6,124962858,124962923,+,GA-rich,Low_complexity,Low_complexity,1,66,0,124962858,124962923 -6 + chr6 125374214 125374324 chr6,125374214,125374348,-,L2c,LINE,L2,-5,3382,3260,125374209,125377607 +1 - chr6 125578558 125578725 chr6,125578556,125578971,-,MLT1J1,LTR,ERVL-MaLR,-53,391,1,125578503,125578971 +5 - chr6 125645634 125645697 chr6,125644268,125645697,+,LTR12C,LTR,ERV1,1,1579,0,125644268,125645697 -4 + chr6 125718352 125718501 chr6,125718352,125718501,+,MIR3,SINE,MIR,47,204,-4,125718306,125718505 +6 + chr6 125718352 125718501 chr6,125718352,125718501,+,MIR3,SINE,MIR,47,204,-4,125718306,125718505 -6 + chr6 125718519 125718815 chr6,125718519,125718815,-,AluSc,SINE,Alu,-12,297,1,125718507,125718815 -6 - chr6 125718519 125718815 chr6,125718519,125718815,-,AluSc,SINE,Alu,-12,297,1,125718507,125718815 +6 - chr6 125719299 125719459 chr6,125719299,125719459,-,MIRb,SINE,MIR,-10,258,90,125719289,125719548 -6 - chr6 125719299 125719459 chr6,125719299,125719459,-,MIRb,SINE,MIR,-10,258,90,125719289,125719548 +6 - chr6 125719604 125719671 chr6,125719604,125719671,+,L2c,LINE,L2,3265,3349,-38,125716340,125719709 +6 + chr6 125719604 125719671 chr6,125719604,125719671,+,L2c,LINE,L2,3265,3349,-38,125716340,125719709 -6 + chr6 125719695 125720104 chr6,125719695,125720104,+,LTR16A,LTR,ERVL,28,451,0,125719668,125720104 +6 + chr6 125719695 125720104 chr6,125719695,125720104,+,LTR16A,LTR,ERVL,28,451,0,125719668,125720104 -6 + chr6 125720149 125720218 chr6,125720149,125720272,+,MamTip2,DNA,hAT-Tip100,43,164,-141,125720107,125720413 +5 + chr6 125720149 125720272 chr6,125720149,125720272,+,MamTip2,DNA,hAT-Tip100,43,164,-141,125720107,125720413 -5 + chr6 125720386 125720507 chr6,125720386,125720588,+,MIR,SINE,MIR,19,215,-47,125720368,125720635 -2 + chr6 125744902 125744936 chr6,125744807,125744936,+,L4_B_Mam,LINE,RTE-X,4598,4728,-213,125740210,125745149 -4 + chr6 125798131 125798165 chr6,125798131,125798232,+,L1ME4a,LINE,L1,5617,5719,-405,125792515,125798637 -2 + chr6 125802407 125802444 chr6,125802407,125802580,-,MLT1I,LTR,ERVL-MaLR,-120,291,102,125802287,125802681 +2 - chr6 126199782 126199900 chr6,126199782,126200013,+,HERV16-int,LTR,ERVL,14,246,-4750,126199769,126204763 +4 + chr6 126202133 126202199 chr6,126202133,126202199,+,L2a,LINE,L2,3355,3420,-6,126198779,126202205 +6 + chr6 128027890 128027920 chr6,128027890,128027920,-,MIRb,SINE,MIR,-113,155,127,128027777,128028046 -6 - chr6 128062702 128062821 chr6,128062682,128062977,-,AluJr4,SINE,Alu,-12,300,1,128062670,128062977 -3 - chr6 128430941 128431237 chr6,128430932,128431237,-,AluSx1,SINE,Alu,-6,306,1,128430926,128431237 +5 - chr6 128431969 128432037 chr6,128431969,128432037,+,GA-rich,Low_complexity,Low_complexity,1,70,0,128431969,128432037 -6 + chr6 128432740 128432768 chr6,128432740,128432773,+,(CA)n,Simple_repeat,Simple_repeat,1,33,0,128432740,128432773 -1 + chr6 128447398 128447521 chr6,128447319,128447521,-,MIR,SINE,MIR,0,262,63,128447319,128447583 +5 - chr6 128447628 128447921 chr6,128447628,128447921,-,AluSx4,SINE,Alu,-16,294,1,128447612,128447921 +6 - chr6 128448423 128448565 chr6,128448423,128448565,+,L2b,LINE,L2,3205,3357,-30,128445219,128448595 -6 + chr6 128448854 128449159 chr6,128448854,128449159,-,AluSx3,SINE,Alu,-7,304,1,128448847,128449159 +6 - chr6 128500814 128500902 chr6,128500814,128500916,-,AluSx3,SINE,Alu,-44,267,160,128500770,128501075 -4 - chr6 128501004 128501176 chr6,128500916,128501176,-,AluSz,SINE,Alu,-51,261,1,128500865,128501176 -5 - chr6 128505125 128505180 chr6,128505107,128505246,-,AluSc,SINE,Alu,-15,294,156,128505092,128505401 -1 - chr6 129528665 129528738 chr6,129528480,129529004,-,MLT1O,LTR,ERVL-MaLR,0,542,1,129528480,129529004 +3 - chr6 129532916 129532969 chr6,129532833,129533192,-,THE1D,LTR,ERVL-MaLR,0,381,1,129532833,129533192 +3 - chr6 129539176 129539375 chr6,129539018,129539777,+,LTR41,LTR,ERVL,8,766,-2,129539011,129539779 -5 + chr6 129546395 129546408 chr6,129546037,129546408,+,L2b,LINE,L2,2268,2644,-775,129543770,129547183 -4 + chr6 129552542 129552587 chr6,129552160,129552906,+,L2a,LINE,L2,2316,3230,-196,129549845,129553102 -1 + chr6 130138220 130138466 chr6,130138220,130138674,-,MLT1C,LTR,ERVL-MaLR,0,467,2,130138220,130138675 +1 - chr6 130697568 130697731 chr6,130697568,130697731,+,MIR,SINE,MIR,4,189,-79,130697565,130697810 +6 + chr6 131901963 131902003 chr6,131901549,131902003,+,LTR7,LTR,ERV1,1,448,-2,131901549,131902005 +1 + chr6 131902005 131902151 chr6,131902005,131905101,+,HERVH-int,LTR,ERV1,1,2995,-4718,131902005,131909819 +1 + chr6 131903648 131904234 chr6,131902005,131905101,+,HERVH-int,LTR,ERV1,1,2995,-4718,131902005,131909819 +1 + chr6 131907406 131907417 chr6,131906968,131907417,+,LTR7,LTR,ERV1,1,448,-2,131906968,131907419 +2 + chr6 131910349 131910436 chr6,131910349,131910436,-,L1MA7,LINE,L1,-6,6285,6200,131910343,131916635 -6 - chr6 131910484 131910608 chr6,131910484,131910608,-,L2c,LINE,L2,-2,3385,3260,131910482,131913867 -6 - chr6 131910759 131910924 chr6,131910759,131910924,-,AluSx,SINE,Alu,-8,304,138,131910751,131911061 -6 - chr6 131911031 131911527 chr6,131911031,131912762,-,L1MD2,LINE,L1,0,6359,4657,131911031,131917418 -5 - chr6 131918450 131919316 chr6,131918252,131919316,+,L1PA13,LINE,L1,17,1139,-5646,131918236,131924962 +2 + chr6 131919319 131920565 chr6,131919319,131921049,+,L1PA13,LINE,L1,4435,6159,-4,131914885,131921053 +5 + chr6 131950946 131950969 chr6,131950932,131950969,+,(GCCCG)n,Simple_repeat,Simple_repeat,1,37,0,131950932,131950969 +1 + chr6 131951185 131951226 chr6,131951185,131951226,+,(GGCGAGC)n,Simple_repeat,Simple_repeat,1,41,0,131951185,131951226 +6 + chr6 132090577 132090726 chr6,132090577,132091987,+,L1M4a1,LINE,L1,35,1820,-932,132090543,132092919 +4 + chr6 132134140 132134291 chr6,132134140,132134291,+,MamTip2,DNA,hAT-Tip100,15,176,-129,132134126,132134420 +6 + chr6 132135764 132135934 chr6,132135764,132135934,+,L1ME4b,LINE,L1,719,882,-10,132135046,132135944 +6 + chr6 132135942 132135988 chr6,132135942,132135988,+,(CTAC)n,Simple_repeat,Simple_repeat,1,46,0,132135942,132135988 +6 + chr6 132136112 132136414 chr6,132136112,132136414,+,L2a,LINE,L2,2930,3244,-182,132133183,132136596 +6 + chr6 132136414 132136716 chr6,132136414,132136716,-,AluSp,SINE,Alu,-7,306,1,132136407,132136716 -6 - chr6 132136716 132136912 chr6,132136716,132136912,+,L2a,LINE,L2,3245,3425,-1,132133472,132136913 +6 + chr6 132146220 132146264 chr6,132146190,132146264,+,Chap1_Mam,DNA,hAT-Charlie,177,258,-84,132146014,132146348 +2 + chr6 132146741 132147058 chr6,132146741,132147108,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,132146741,132147108 +5 + chr6 132160764 132160774 chr6,132160627,132160774,-,Charlie5,DNA,hAT-Charlie,-68,2556,2406,132160559,132163179 -1 - chr6 132160778 132160914 chr6,132160778,132161366,+,ERV3-16A3_I-int,LTR,ERVL,3695,4273,-953,132157084,132162319 +4 + chr6 132163897 132163992 chr6,132163482,132163992,+,ERV3-16A3_I-int,LTR,ERVL,4690,5226,0,132158793,132163992 +2 + chr6 132163998 132164412 chr6,132163998,132164412,+,LTR16A,LTR,ERVL,7,451,0,132163992,132164412 +6 + chr6 132752942 132752987 chr6,132752942,132752987,+,(TC)n,Simple_repeat,Simple_repeat,1,47,0,132752942,132752987 +6 + chr6 132753052 132753151 chr6,132753052,132753324,-,AluSc8,SINE,Alu,-18,293,1,132753034,132753324 -4 - chr6 132753848 132753951 chr6,132753669,132753978,+,AluSz,SINE,Alu,1,308,-4,132753669,132753982 +5 + chr6 132892062 132892359 chr6,132892062,132892359,+,AluSx1,SINE,Alu,1,297,-15,132892062,132892374 +6 + chr6 132892535 132892825 chr6,132892535,132892825,+,AluY,SINE,Alu,1,293,-18,132892535,132892843 +6 + chr6 133088080 133088545 chr6,133087965,133088545,+,MLT1E2,LTR,ERVL-MaLR,4,627,0,133087962,133088545 +1 + chr6 133106386 133106578 chr6,133106386,133106617,+,MIRc,SINE,MIR,27,262,-6,133106360,133106623 +5 + chr6 133507244 133507305 chr6,133507096,133507305,-,MIRb,SINE,MIR,-18,250,29,133507078,133507333 +4 - chr6 133511689 133511728 chr6,133511689,133511993,+,AluY,SINE,Alu,1,294,-17,133511689,133512010 -1 + chr6 133535820 133535901 chr6,133535820,133535901,-,L2c,LINE,L2,-840,2579,2499,133534980,133538399 +6 - chr6 133537261 133537358 chr6,133537261,133537390,-,MIRb,SINE,MIR,-57,211,55,133537204,133537444 +5 - chr6 133538101 133538192 chr6,133538101,133538194,-,AluSc,SINE,Alu,-8,301,209,133538093,133538402 +2 - chr6 133767397 133767608 chr6,133766911,133767729,+,L2c,LINE,L2,2534,3383,-4,133764378,133767733 -1 + chr6 133821321 133821735 chr6,133821321,133821787,-,MLT1J,LTR,ERVL-MaLR,-2,510,4,133821319,133821790 -4 - chr6 133851429 133851788 chr6,133851429,133851788,+,L1MB7,LINE,L1,5675,6035,-149,133845755,133851937 +6 + chr6 134428240 134428458 chr6,134428158,134428458,-,MER33,DNA,hAT-Charlie,-13,311,11,134428145,134428468 +5 - chr6 134428501 134428717 chr6,134428501,134428717,-,MER103C,DNA,hAT-Charlie,-62,235,1,134428439,134428717 +6 - chr6 134428860 134429215 chr6,134428860,134429681,-,Zaphod,DNA,hAT-Tip100,-2681,1350,502,134426179,134430182 +2 - chr6 134464741 134464769 chr6,134464696,134464769,-,Alu,SINE,Alu,-3,298,224,134464693,134464992 -2 - chr6 134475116 134475225 chr6,134475036,134475335,-,MLT1I,LTR,ERVL-MaLR,-11,400,101,134475025,134475435 +3 - chr6 134476760 134476896 chr6,134476760,134476896,-,MamRTE1,LINE,RTE-BovB,-56,3756,3621,134476704,134480516 -6 - chr6 134504468 134504581 chr6,134504468,134504773,+,AluJb,SINE,Alu,1,311,-1,134504468,134504774 +5 + chr6 134525314 134525381 chr6,134525182,134525381,+,MER58C,DNA,hAT-Charlie,1,214,-1,134525182,134525382 -5 + chr6 134525524 134525543 chr6,134525524,134525603,-,MLT1J2,LTR,ERVL-MaLR,-330,118,26,134525194,134525628 +2 - chr6 134528823 134528942 chr6,134528668,134528974,+,AluSg,SINE,Alu,2,309,-1,134528667,134528975 -3 + chr6 134534439 134534669 chr6,134533083,134535527,+,ERVL-E-int,LTR,ERVL,3058,5660,-7,134530026,134535534 -1 + chr6 134606299 134606436 chr6,134606218,134606453,+,L4_B_Mam,LINE,RTE-X,662,907,-4034,134605557,134610487 -5 + chr6 134609256 134609300 chr6,134609256,134609300,-,L2,LINE,L2,-601,2818,2774,134608655,134612073 +6 - chr6 134609300 134609437 chr6,134609300,134609833,+,MLT1F,LTR,ERVL-MaLR,1,548,0,134609300,134609833 -1 + chr6 134659749 134659836 chr6,134659109,134660077,-,LTR5_Hs,LTR,ERVK,0,968,1,134659109,134660077 +1 - chr6 134706720 134706770 chr6,134706720,134706770,+,(TA)n,Simple_repeat,Simple_repeat,1,50,0,134706720,134706770 -6 + chr6 134707264 134707323 chr6,134707264,134707323,+,(CT)n,Simple_repeat,Simple_repeat,1,61,0,134707264,134707323 -6 + chr6 134941392 134941438 chr6,134941374,134941687,-,AluSq2,SINE,Alu,0,313,3,134941374,134941689 -1 - chr6 134942210 134942228 chr6,134941937,134942228,+,AluSz,SINE,Alu,1,291,-21,134941937,134942249 +2 + chr6 135055111 135055197 chr6,135055111,135055197,+,L2c,LINE,L2,3286,3374,-13,135051826,135055210 +6 + chr6 135055221 135055486 chr6,135055221,135055516,+,AluJo,SINE,Alu,1,293,-19,135055221,135055535 +4 + chr6 135260816 135260933 chr6,135260762,135261105,-,AluJb,SINE,Alu,0,312,2,135260762,135261106 -5 - chr6 135499352 135499410 chr6,135499323,135499410,+,L2a,LINE,L2,3337,3424,-2,135495987,135499412 +2 + chr6 135499405 135499441 chr6,135499405,135499487,-,MIR,SINE,MIR,0,262,174,135499405,135499660 -4 - chr6 135514060 135514166 chr6,135514051,135514189,-,LTR50,LTR,ERVL,-628,167,1,135513423,135514189 -3 - chr6 135516881 135516909 chr6,135516787,135516909,-,L1PREC2,LINE,L1,-1699,4447,4327,135515088,135521235 -2 - chr6 135516901 135517059 chr6,135516901,135518338,+,L1PA14,LINE,L1,4416,5852,-309,135512486,135518647 +5 + chr6 135518686 135518727 chr6,135518686,135518727,+,L2c,LINE,L2,2821,2861,-558,135515866,135519285 +6 + chr6 135518759 135518830 chr6,135518759,135519126,+,L2c,LINE,L2,2934,3316,-71,135515826,135519197 +5 + chr6 135629405 135629558 chr6,135629402,135629558,+,MIR3,SINE,MIR,40,204,-4,135629363,135629562 -5 + chr6 135629587 135629623 chr6,135629587,135630066,+,L3,LINE,CR1,3459,4010,-89,135626129,135630155 -2 + chr6 135629957 135630066 chr6,135629587,135630066,+,L3,LINE,CR1,3459,4010,-89,135626129,135630155 -4 + chr6 135642403 135642841 chr6,135642403,135642841,-,Tigger2a,DNA,TcMar-Tigger,0,434,1,135642403,135642841 -6 - chr6 135689861 135690341 chr6,135689861,135690341,-,MLT1F1,LTR,ERVL-MaLR,-35,534,1,135689826,135690341 -6 - chr6 135690606 135690835 chr6,135690606,135691413,-,L1ME4b,LINE,L1,0,892,1,135690606,135691413 -5 - chr6 135716045 135716055 chr6,135716045,135716257,+,L1MEd,LINE,L1,3547,3774,-2372,135712499,135718629 +5 + chr6 136043852 136044003 chr6,136043724,136044003,+,L2,LINE,L2,2683,2989,-430,136041042,136044433 -5 + chr6 136094715 136094779 chr6,136094316,136094826,+,L2a,LINE,L2,2926,3426,0,136091391,136094826 -5 + chr6 136095716 136095825 chr6,136095678,136095914,+,MIR,SINE,MIR,10,262,0,136095669,136095914 -3 + chr6 136097998 136098043 chr6,136097992,136098086,+,L2b,LINE,L2,3084,3175,-200,136094909,136098286 -1 + chr6 136112493 136112528 chr6,136112291,136112528,+,MER58A,DNA,hAT-Charlie,1,223,-1,136112291,136112529 -4 + chr6 136114820 136114856 chr6,136114719,136114856,+,MamRTE1,LINE,RTE-BovB,2090,2232,-1580,136112630,136116436 -4 + chr6 136162018 136162123 chr6,136161906,136162123,+,Charlie2b,DNA,hAT-Charlie,6,241,-2541,136161901,136164664 -4 + chr6 136162252 136162348 chr6,136162168,136162539,-,THE1C,LTR,ERVL-MaLR,0,375,1,136162168,136162539 +3 - chr6 136225538 136225595 chr6,136225478,136225763,-,THE1B,LTR,ERVL-MaLR,-25,403,57,136225453,136225819 +1 - chr6 136551940 136551977 chr6,136551940,136551977,+,(A)n,Simple_repeat,Simple_repeat,1,37,0,136551940,136551977 +6 + chr6 136551985 136552024 chr6,136551985,136552024,+,(TTGTT)n,Simple_repeat,Simple_repeat,1,39,0,136551985,136552024 +6 + chr6 136982165 136982265 chr6,136981722,136982265,-,MER44B,DNA,TcMar-Tigger,0,550,1,136981722,136982265 +5 - chr6 136982265 136982387 chr6,136982265,136982387,-,LTR16A2,LTR,ERVL,-55,440,314,136982210,136982700 +6 - chr6 136982428 136982711 chr6,136982428,136982711,+,AluJo,SINE,Alu,1,296,-16,136982428,136982727 -6 + chr6 136982779 136982798 chr6,136982779,136982798,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,136982779,136982798 -6 + chr6 136982933 136983153 chr6,136982933,136983307,-,MLT1J,LTR,ERVL-MaLR,-4,508,111,136982929,136983417 +2 - chr6 136993174 136993234 chr6,136993109,136993451,-,THE1A,LTR,ERVL-MaLR,0,355,1,136993109,136993451 +1 - chr6 136995170 136995268 chr6,136995057,136995318,+,MER124,DNA?,DNA?,20,281,-116,136995038,136995434 +1 + chr6 136999220 136999235 chr6,136998912,136999235,-,MER2B,DNA,TcMar-Tigger,-1,335,2,136998911,136999236 -2 - chr6 137674414 137674539 chr6,137674414,137674539,+,L2a,LINE,L2,3304,3426,0,137671111,137674539 +6 + chr6 137730170 137730361 chr6,137730161,137730361,-,MIRc,SINE,MIR,-33,229,35,137730128,137730395 +5 - chr6 137730362 137730531 chr6,137730362,137730531,+,MER5A,DNA,hAT-Charlie,1,179,-10,137730362,137730541 -6 + chr6 137738750 137738945 chr6,137738750,137738945,-,MIRc,SINE,MIR,-63,205,3,137738687,137738947 +6 - chr6 137825826 137825865 chr6,137825826,137825865,+,(TTTGATA)n,Simple_repeat,Simple_repeat,1,39,0,137825826,137825865 -6 + chr6 137854862 137854951 chr6,137854649,137854951,+,L1MC5a,LINE,L1,4839,5127,-1019,137849811,137855970 -5 + chr6 137855037 137855085 chr6,137855037,137855085,+,A-rich,Low_complexity,Low_complexity,1,48,0,137855037,137855085 -6 + chr6 137855088 137855224 chr6,137855088,137855224,+,L1MC5a,LINE,L1,6,118,-2659,137855083,137857883 -6 + chr6 137855229 137855485 chr6,137855229,137855525,+,AluJr,SINE,Alu,1,295,-17,137855229,137855542 -2 + chr6 137857286 137857453 chr6,137857143,137857453,-,AluSq2,SINE,Alu,-2,311,1,137857141,137857453 +5 - chr6 137857586 137857629 chr6,137857586,137857629,+,(TTTG)n,Simple_repeat,Simple_repeat,1,44,0,137857586,137857629 -5 + chr6 137857657 137857779 chr6,137857657,137857779,+,MIRc,SINE,MIR,7,139,-129,137857651,137857908 -5 + chr6 137861296 137861474 chr6,137861296,137861474,+,Kanga11a,DNA,TcMar-Tc2,1,185,-785,137861296,137862259 -6 + chr6 137866822 137866851 chr6,137866822,137866851,+,(TTTC)n,Simple_repeat,Simple_repeat,1,30,0,137866822,137866851 -6 + chr6 137951141 137951574 chr6,137951104,137951842,+,LTR41B,LTR,ERVL,1,756,-2,137951104,137951844 +5 + chr6 137972243 137972364 chr6,137971558,137972364,+,LTR102_Mam,LTR,ERVL,1,851,0,137971558,137972364 +2 + chr6 137972364 137972522 chr6,137972364,137972545,+,L2a,LINE,L2,3108,3292,-134,137969257,137972679 +5 + chr6 138694371 138694471 chr6,138694371,138694471,+,MIRc,SINE,MIR,158,255,-13,138694214,138694484 +1 + chr6 138694492 138694547 chr6,138694492,138694600,-,L2b,LINE,L2,-6,3369,3250,138694486,138697849 -4 - chr6 138696368 138696584 chr6,138696360,138696584,-,LTR78,LTR,ERV1,-2,1302,1069,138696358,138697652 -1 - chr6 138696673 138696801 chr6,138696673,138696801,-,LTR78,LTR,ERV1,-425,879,749,138696248,138697549 -6 - chr6 138697104 138697288 chr6,138697104,138697434,-,LTR78,LTR,ERV1,-912,392,3,138696192,138697436 -5 - chr6 139144204 139144333 chr6,139144194,139144333,-,L2b,LINE,L2,0,3387,3258,139144194,139147590 +5 - chr6 139144380 139144491 chr6,139144380,139144491,-,L2b,LINE,L2,-228,3147,3030,139144152,139147520 +5 - chr6 139153209 139153235 chr6,139153209,139153424,-,Charlie2b,DNA,hAT-Charlie,-9,2773,2525,139153200,139155948 +2 - chr6 139159157 139159221 chr6,139159098,139159221,-,MIR,SINE,MIR,-121,141,36,139158977,139159256 +5 - chr6 139166223 139166260 chr6,139166223,139166260,+,Tigger4b,DNA,TcMar-Tigger,1,37,-324,139166223,139166584 -6 + chr6 139169580 139169902 chr6,139169552,139169910,-,MLT1H,LTR,ERVL-MaLR,-15,580,72,139169537,139169981 +5 - chr6 139170057 139170165 chr6,139170035,139170165,-,L1M7,LINE,L1,-6070,148,9,139163965,139170173 +5 - chr6 139183145 139183247 chr6,139183145,139183247,-,MIR3,SINE,MIR,-63,145,30,139183082,139183276 +6 - chr6 139197712 139197869 chr6,139197662,139198061,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,139197662,139198061 +5 - chr6 139199918 139200076 chr6,139199918,139200322,+,LTR16B2,LTR,ERVL,12,437,-25,139199907,139200347 -2 + chr6 139203575 139203591 chr6,139203329,139203591,+,L2-3_Crp,LINE,L2,709,971,-1125,139202621,139204716 -4 + chr6 139234196 139234571 chr6,139233780,139235492,+,THE1D-int,LTR,ERVL-MaLR,3,1631,0,139233778,139235492 -5 + chr6 139237377 139237505 chr6,139237219,139237537,+,AluSc8,SINE,Alu,1,310,-1,139237219,139237538 -5 + chr6 139239496 139239653 chr6,139239496,139239796,-,AluJb,SINE,Alu,-16,296,1,139239480,139239796 +1 - chr6 139268976 139269170 chr6,139268910,139269203,-,AluJo,SINE,Alu,-20,292,2,139268890,139269204 +3 - chr6 139271478 139271549 chr6,139271478,139271659,-,MER53,DNA,hAT,0,193,5,139271478,139271663 -4 - chr6 139277082 139277168 chr6,139276958,139277168,+,MIRb,SINE,MIR,38,263,-5,139276921,139277173 -4 + chr6 139286845 139287057 chr6,139286577,139287057,+,MER1A,DNA,hAT-Charlie,31,528,-1,139286547,139287058 +2 + chr6 139287057 139287307 chr6,139287057,139287389,+,LTR47A2,LTR,ERVL,96,430,-2,139286962,139287391 +5 + chr6 139470400 139470460 chr6,139470400,139470521,+,MLT1D,LTR,ERVL-MaLR,366,501,-4,139470035,139470525 -2 + chr6 139856304 139856383 chr6,139856304,139856383,+,GA-rich,Low_complexity,Low_complexity,1,79,0,139856304,139856383 -6 + chr6 139859399 139859517 chr6,139859399,139859517,-,UCON26,Unknown,Unknown,-84,259,131,139859315,139859647 -6 - chr6 139859810 139859843 chr6,139859810,139859843,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,139859810,139859843 +6 + chr6 139860046 139860151 chr6,139860046,139860523,+,MLT1J,LTR,ERVL-MaLR,36,505,-7,139860011,139860530 +5 + chr6 140067707 140067880 chr6,140067707,140067955,-,MIR,SINE,MIR,-11,251,12,140067696,140067966 -4 - chr6 140092991 140093247 chr6,140092675,140093247,-,MLT1H,LTR,ERVL-MaLR,-4,575,1,140092671,140093247 -2 - chr6 140093247 140093496 chr6,140093247,140093496,-,Arthur1B,DNA,hAT-Tip100,-944,281,18,140092303,140093513 -6 - chr6 140093546 140093721 chr6,140093546,140093937,+,L2a,LINE,L2,2569,2971,-448,140090978,140094385 +5 + chr6 140846058 140846304 chr6,140846058,140846313,+,AluSx1,SINE,Alu,1,284,-28,140846058,140846341 -2 + chr6 140852819 140852855 chr6,140852724,140852855,-,MIR,SINE,MIR,-117,145,15,140852607,140852869 +4 - chr6 140852898 140852924 chr6,140852898,140852970,+,L2a,LINE,L2,3356,3426,0,140849543,140852970 -1 + chr6 141447100 141447169 chr6,141447100,141447169,+,(AT)n,Simple_repeat,Simple_repeat,1,70,0,141447100,141447169 +6 + chr6 141447962 141448029 chr6,141447962,141448029,-,L2c,LINE,L2,0,3387,3321,141447962,141451349 -6 - chr6 141448259 141448410 chr6,141448259,141448410,-,MIR,SINE,MIR,-103,159,1,141448156,141448410 -6 - chr6 141448567 141448597 chr6,141448567,141448597,+,A-rich,Low_complexity,Low_complexity,1,30,0,141448567,141448597 +6 + chr6 141449053 141449098 chr6,141449053,141449098,-,L2a,LINE,L2,-107,3319,3274,141448946,141452371 -6 - chr6 141449994 141450118 chr6,141449994,141450118,+,L2a,LINE,L2,3293,3426,0,141446702,141450118 +6 + chr6 141450571 141450981 chr6,141450571,141450981,-,Tigger2a,DNA,TcMar-Tigger,-28,406,1,141450543,141450981 -6 - chr6 142259604 142259632 chr6,142259604,142259832,-,L1MEc,LINE,L1,-6079,321,98,142253525,142259929 +1 - chr6 142526455 142526726 chr6,142526408,142526726,-,LTR16A,LTR,ERVL,0,451,126,142526408,142526851 +5 - chr6 142526790 142527412 chr6,142526790,142527412,-,ERV3-16A3_I-int,LTR,ERVL,-3,5223,4466,142526787,142531877 +6 - chr6 142527553 142528367 chr6,142527553,142528367,-,ERV3-16A3_I-int,LTR,ERVL,-804,4422,3617,142526749,142531983 +6 - chr6 142544807 142544993 chr6,142544717,142545029,+,AluJb,SINE,Alu,1,309,-3,142544717,142545032 -3 + chr6 142788193 142788316 chr6,142788193,142788316,+,L1PA4,LINE,L1,6029,6151,-4,142782165,142788320 +6 + chr6 142788330 142788430 chr6,142788330,142788430,-,L2c,LINE,L2,-12,3375,3284,142788318,142791713 -6 - chr6 142788430 142788444 chr6,142788430,142788718,+,AluSx1,SINE,Alu,1,288,-24,142788430,142788742 +4 + chr6 142794010 142794086 chr6,142794010,142794247,+,L4_A_Mam,LINE,RTE-X,4640,4893,-97,142789371,142794344 +5 + chr6 142946112 142946139 chr6,142946112,142946139,+,(GAGG)n,Simple_repeat,Simple_repeat,1,27,0,142946112,142946139 -6 + chr6 142950283 142950391 chr6,142950283,142950542,-,MLT1K,LTR,ERVL-MaLR,-41,554,269,142950242,142950810 -4 - chr6 142956586 142956646 chr6,142956586,142956753,+,MIRb,SINE,MIR,48,226,-42,142956539,142956795 +5 + chr6 142956586 142956698 chr6,142956586,142956753,+,MIRb,SINE,MIR,48,226,-42,142956539,142956795 -5 + chr6 142966930 142967022 chr6,142966930,142967022,-,MER103C,DNA,hAT-Charlie,-135,162,72,142966795,142967093 +6 - chr6 142967372 142967441 chr6,142967372,142967652,-,MLT1H1,LTR,ERVL-MaLR,-281,274,1,142967091,142967652 +2 - chr6 142986045 142986130 chr6,142986026,142986136,+,OldhAT1,DNA,hAT-Ac,841,962,-1886,142985186,142988022 -3 + chr6 143021666 143021953 chr6,143021455,143022482,-,L1MC3,LINE,L1,-2,7783,6695,143021453,143029176 +1 - chr6 143037039 143037183 chr6,143037039,143037183,-,HAL1ME,LINE,L1,-2038,427,277,143035001,143037459 +6 - chr6 143037276 143038070 chr6,143037276,143038070,-,L1MEg,LINE,L1,-4480,3070,2290,143032796,143040359 +6 - chr6 143039425 143039828 chr6,143039306,143039936,-,L1MEg,LINE,L1,-5473,979,569,143033833,143040504 +5 - chr6 143094034 143094157 chr6,143093064,143094157,-,Tigger1,DNA,TcMar-Tigger,-1354,1064,2,143091710,143094158 +5 - chr6 143099527 143099645 chr6,143099527,143099667,-,L1ME3F,LINE,L1,-180,6063,5911,143099347,143105577 +1 - chr6 143484979 143485091 chr6,143484705,143485091,+,L1ME4a,LINE,L1,5698,6114,-10,143479008,143485101 +1 + chr6 143505340 143505457 chr6,143505307,143505616,-,AluJr,SINE,Alu,0,312,1,143505307,143505616 -3 - chr6 143506192 143506491 chr6,143506192,143506491,-,AluJb,SINE,Alu,-9,303,3,143506183,143506493 -6 - chr6 143554325 143554750 chr6,143554304,143554750,-,MER31A,LTR,ERV1,-8,477,1,143554296,143554750 +5 - chr6 143554751 143554906 chr6,143554751,143554906,-,L1ME3G,LINE,L1,-756,168,39,143553995,143554944 +6 - chr6 143561293 143561382 chr6,143561293,143561382,+,L2b,LINE,L2,3269,3373,-2,143558025,143561384 -6 + chr6 143561925 143562031 chr6,143561925,143562175,+,L2c,LINE,L2,2992,3267,-120,143558934,143562295 -1 + chr6 144312011 144312093 chr6,144312011,144312143,+,MIR,SINE,MIR,69,215,-47,144311943,144312190 -2 + chr6 144333196 144333240 chr6,144332904,144333240,-,AluSx1,SINE,Alu,0,312,1,144332904,144333240 +4 - chr6 145735975 145736071 chr6,145735975,145736071,+,MIR3,SINE,MIR,89,187,-21,145735887,145736092 +6 + chr6 145736273 145736310 chr6,145736273,145736310,-,AluSz6,SINE,Alu,-14,298,262,145736259,145736571 -6 - chr6 145737144 145737173 chr6,145737144,145737188,+,L3,LINE,CR1,462,509,-3590,145736683,145740778 -1 + chr6 145737144 145737188 chr6,145737144,145737188,+,L3,LINE,CR1,462,509,-3590,145736683,145740778 +1 + chr6 145815053 145815170 chr6,145815053,145815170,-,MIR3,SINE,MIR,-60,148,14,145814993,145815183 -6 - chr6 145828361 145828456 chr6,145828161,145828539,+,THE1C,LTR,ERVL-MaLR,1,375,0,145828161,145828539 +3 + chr6 145854602 145855086 chr6,145854369,145856130,+,L1PA2,LINE,L1,4393,6153,-2,145849977,145856132 +5 + chr6 145870930 145870944 chr6,145870561,145870944,-,L1MC,LINE,L1,-1903,4243,3859,145868658,145874802 -2 - chr6 145870945 145871493 chr6,145870945,145873202,+,L1PA11,LINE,L1,3881,6174,0,145867065,145873202 +5 + chr6 145885061 145885269 chr6,145885061,145885269,+,MIRc,SINE,MIR,22,249,-19,145885040,145885288 +6 + chr6 146594516 146594674 chr6,146594483,146594674,-,LTR16,LTR,ERVL,-3,435,235,146594480,146594908 +5 - chr6 146595182 146595346 chr6,146595182,146595346,+,MIR,SINE,MIR,5,175,-87,146595178,146595433 -6 + chr6 146595367 146595597 chr6,146595367,146595597,+,MIR,SINE,MIR,2,262,0,146595366,146595597 -6 + chr6 146596382 146596504 chr6,146596382,146596549,+,MIRb,SINE,MIR,6,189,-41,146596377,146596590 -2 + chr6 146841901 146841999 chr6,146841893,146841999,-,L1ME3G,LINE,L1,-248,676,566,146841645,146842564 +5 - chr6 146843114 146843389 chr6,146843088,146843389,-,AluSq2,SINE,Alu,-5,308,2,146843083,146843390 +5 - chr6 146843389 146843649 chr6,146843389,146843649,-,L1ME3G,LINE,L1,-480,444,193,146842909,146843841 +6 - chr6 146843720 146843803 chr6,146843720,146843803,-,L1MC5,LINE,L1,-2622,6682,6611,146841098,146850413 +6 - chr6 146844199 146844553 chr6,146844199,146844553,-,THE1C,LTR,ERVL-MaLR,0,375,18,146844199,146844570 +6 - chr6 146844554 146844712 chr6,146844554,146846096,-,THE1C-int,LTR,ERVL-MaLR,-2,1578,1,146844552,146846096 +2 - chr6 146850512 146850653 chr6,146850512,146850978,-,LTR16C,LTR,ERVL,0,489,5,146850512,146850982 +2 - chr6 146850821 146850978 chr6,146850512,146850978,-,LTR16C,LTR,ERVL,0,489,5,146850512,146850982 +4 - chr6 146851080 146851331 chr6,146851080,146851531,-,MLT1F,LTR,ERVL-MaLR,-77,483,5,146851003,146851535 +2 - chr6 146862847 146863081 chr6,146862847,146863166,-,L3,LINE,CR1,-3,4096,3764,146862844,146866929 -5 - chr6 146864459 146864560 chr6,146864201,146864560,-,L3,LINE,CR1,-2043,2056,1690,146862158,146866249 +5 - chr6 146905919 146905938 chr6,146905886,146905938,-,L3b,LINE,CR1,-239,4993,4940,146905647,146910877 +4 - chr6 146911826 146911847 chr6,146911695,146911847,-,MIRc,SINE,MIR,-27,241,83,146911668,146911929 +5 - chr6 146948528 146948941 chr6,146948486,146948941,-,MLT1D,LTR,ERVL-MaLR,0,505,2,146948486,146948942 +5 - chr6 146950601 146951044 chr6,146950601,146951044,-,MLT1C,LTR,ERVL-MaLR,0,467,6,146950601,146951049 +6 - chr6 147119417 147119477 chr6,147119198,147119659,+,L1MB3,LINE,L1,5646,6174,-9,147113553,147119668 -5 + chr6 147131866 147131896 chr6,147131800,147131896,-,MIR3,SINE,MIR,-126,104,9,147131674,147131904 +4 - chr6 147131896 147131986 chr6,147131896,147132081,+,UCON78,DNA,DNA,79,280,-163,147131818,147132244 -1 + chr6 147165731 147165859 chr6,147165419,147165865,+,MER54A,LTR,ERVL,3,519,-382,147165417,147166247 +3 + chr6 147170013 147170083 chr6,147169962,147170084,+,L2c,LINE,L2,3196,3318,-108,147166767,147170192 -3 + chr6 147173593 147173647 chr6,147173517,147173671,+,MIR,SINE,MIR,3,156,-106,147173515,147173777 -3 + chr6 147180729 147180992 chr6,147180727,147181014,+,AluSc,SINE,Alu,1,300,-9,147180727,147181023 +5 + chr6 147204594 147204614 chr6,147204594,147204615,+,(GCA)n,Simple_repeat,Simple_repeat,1,21,0,147204594,147204615 -1 + chr6 147389676 147389727 chr6,147389676,147389727,+,(TTTGT)n,Simple_repeat,Simple_repeat,1,52,0,147389676,147389727 +6 + chr6 147660703 147660819 chr6,147660510,147660901,+,MSTA,LTR,ERVL-MaLR,1,428,0,147660510,147660901 +1 + chr6 147743225 147743324 chr6,147743225,147743517,+,AluY,SINE,Alu,1,296,-15,147743225,147743532 -1 + chr6 147953403 147953457 chr6,147953403,147953457,-,MIR3,SINE,MIR,0,208,151,147953403,147953607 -6 - chr6 147953703 147953739 chr6,147953703,147953739,+,(ATGTGTA)n,Simple_repeat,Simple_repeat,1,37,0,147953703,147953739 +6 + chr6 148017441 148017483 chr6,148017441,148017483,+,L2b,LINE,L2,3330,3370,-5,148014112,148017488 -6 + chr6 148020836 148020974 chr6,148020731,148021297,-,MLT1G1,LTR,ERVL-MaLR,0,569,2,148020731,148021298 +1 - chr6 148133809 148133823 chr6,148133544,148133823,+,AluSx1,SINE,Alu,1,279,-33,148133544,148133856 -5 + chr6 148280283 148280428 chr6,148280256,148280507,+,MIRb,SINE,MIR,13,262,-6,148280244,148280513 -3 + chr6 148956036 148956153 chr6,148956036,148956205,+,MIRc,SINE,MIR,20,190,-78,148956017,148956283 -2 + chr6 149217926 149218082 chr6,149217688,149218082,+,MLT1J,LTR,ERVL-MaLR,2,392,-120,149217687,149218202 +1 + chr6 149218623 149218675 chr6,149218600,149218675,-,MIR3,SINE,MIR,-102,160,74,149218498,149218748 -2 - chr6 149220802 149220915 chr6,149220630,149220915,-,AluJo,SINE,Alu,-25,287,2,149220605,149220916 -2 - chr6 149220915 149221287 chr6,149220915,149221553,-,Charlie1a,DNA,hAT-Charlie,-798,657,24,149220117,149221576 -5 - chr6 149592028 149592044 chr6,149592028,149592315,-,AluY,SINE,Alu,-24,287,1,149592004,149592315 +2 - chr6 149592614 149592663 chr6,149592360,149592668,+,AluY,SINE,Alu,1,298,-13,149592360,149592681 -1 + chr6 149796789 149797113 chr6,149796789,149797113,-,AluSq2,SINE,Alu,0,313,1,149796789,149797113 +6 - chr6 149797402 149797654 chr6,149797402,149797654,+,AluJo,SINE,Alu,1,258,-54,149797402,149797708 -6 + chr6 149797894 149798172 chr6,149797894,149798183,+,AluJb,SINE,Alu,12,297,-15,149797883,149798198 -1 + chr6 149799056 149799145 chr6,149799035,149799327,+,AluJr,SINE,Alu,1,296,-16,149799035,149799343 -1 + chr6 149863783 149863825 chr6,149863783,149863825,+,(CAGCTC)n,Simple_repeat,Simple_repeat,1,45,0,149863783,149863825 +6 + chr6 149864263 149864298 chr6,149864263,149864298,+,(GCCCTGC)n,Simple_repeat,Simple_repeat,1,37,0,149864263,149864298 +6 + chr6 150041025 150041173 chr6,150041025,150041348,-,L2b,LINE,L2,-31,3344,3029,150040994,150044376 +2 - chr6 150605777 150605850 chr6,150605777,150605901,-,MER104,DNA,TcMar-Tc2,-31,150,5,150605746,150605905 -5 - chr6 150624750 150624859 chr6,150624750,150624859,-,MIRb,SINE,MIR,-128,140,22,150624622,150624880 -6 - chr6 150624908 150624959 chr6,150624908,150625155,+,AluSz,SINE,Alu,1,294,-18,150624908,150625173 +4 + chr6 150625731 150625793 chr6,150625498,150625793,-,AluSz,SINE,Alu,-21,291,1,150625477,150625793 -2 - chr6 150625793 150625903 chr6,150625793,150625903,-,MLT1B,LTR,ERVL-MaLR,-283,107,1,150625510,150625903 -6 - chr6 150625904 150626086 chr6,150625904,150626105,+,L1MC5a,LINE,L1,2457,2668,-109,150623448,150626214 +5 + chr6 150650918 150651180 chr6,150650918,150651233,-,MER44A,DNA,TcMar-Tigger,-1,338,1,150650917,150651233 +2 - chr6 150651821 150651873 chr6,150651576,150651873,+,AluSz,SINE,Alu,1,297,-15,150651576,150651888 -4 + chr6 151054984 151055005 chr6,151054984,151055279,+,AluSx1,SINE,Alu,2,298,-14,151054983,151055293 -2 + chr6 151055771 151055825 chr6,151055521,151055825,-,AluSp,SINE,Alu,-7,306,1,151055514,151055825 +4 - chr6 151056023 151056057 chr6,151056023,151056548,+,L4_B_Mam,LINE,RTE-X,3831,4384,-557,151052193,151057105 -1 + chr6 151138749 151138866 chr6,151138557,151138889,+,AluJb,SINE,Alu,1,302,-10,151138557,151138899 -3 + chr6 151150889 151151138 chr6,151150851,151151186,+,L2c,LINE,L2,3060,3380,-7,151147792,151151193 -3 + chr6 151196681 151196695 chr6,151196612,151196695,-,MLT1K,LTR,ERVL-MaLR,0,595,518,151196612,151197212 +5 - chr6 151196945 151197069 chr6,151196945,151197069,-,MamRep1894,DNA,hAT,0,123,1,151196945,151197069 +6 - chr6 151197250 151197364 chr6,151197250,151197391,+,AluJr,SINE,Alu,1,133,-179,151197250,151197570 -2 + chr6 151197519 151197638 chr6,151197479,151197658,+,AluJr,SINE,Alu,134,302,-10,151197346,151197668 -1 + chr6 151813355 151813412 chr6,151813355,151813412,+,(TGA)n,Simple_repeat,Simple_repeat,1,58,0,151813355,151813412 -6 + chr6 152402398 152402667 chr6,152401729,152402701,-,LTR78,LTR,ERV1,-18,1286,249,152401711,152402949 -1 - chr6 152546389 152546602 chr6,152546300,152546602,+,MLT1H,LTR,ERVL-MaLR,1,300,-249,152546300,152546851 +2 + chr6 152546956 152546983 chr6,152546956,152546983,+,(AAAAG)n,Simple_repeat,Simple_repeat,1,27,0,152546956,152546983 +6 + chr6 152831854 152831913 chr6,152831769,152831954,+,L1PA15,LINE,L1,5971,6156,-9,152825799,152831963 -1 + chr6 152988676 152988883 chr6,152988569,152988883,+,MLT2D,LTR,ERVL,55,364,-50,152988515,152988933 +2 + chr6 152989008 152989223 chr6,152989008,152989276,+,LTR41B,LTR,ERVL,466,744,-14,152988543,152989290 +5 + chr6 153307754 153307822 chr6,153307754,153307908,+,MIR,SINE,MIR,71,223,-39,153307684,153307947 -2 + chr6 153346554 153347488 chr6,153346554,153348004,+,L1PA3,LINE,L1,4705,6153,-2,153341850,153348006 +5 + chr6 155253139 155253191 chr6,155253102,155253191,-,MIR3,SINE,MIR,-9,199,108,155253093,155253298 +5 - chr6 155254292 155254320 chr6,155254292,155254320,+,(GCTG)n,Simple_repeat,Simple_repeat,1,29,0,155254292,155254320 -6 + chr6 155254761 155254921 chr6,155254761,155254921,+,L2a,LINE,L2,3192,3386,-40,155251570,155254961 -6 + chr6 155254937 155255289 chr6,155254937,155255289,+,MER47A,DNA,TcMar-Tigger,1,365,-1,155254937,155255290 -6 + chr6 155255617 155255637 chr6,155255617,155255637,+,(AC)n,Simple_repeat,Simple_repeat,1,20,0,155255617,155255637 -6 + chr6 155255717 155256019 chr6,155255717,155256019,+,AluJb,SINE,Alu,1,292,-20,155255717,155256039 -6 + chr6 155380511 155380817 chr6,155380422,155380817,-,LTR79,LTR,ERVL,0,527,70,155380422,155380886 +5 - chr6 156497927 156498023 chr6,156497927,156498051,+,MIRb,SINE,MIR,58,208,-60,156497870,156498111 -2 + chr6 156499734 156499767 chr6,156499683,156499767,-,MER5A,DNA,hAT-Charlie,-50,139,55,156499633,156499821 +4 - chr6 156776762 156776806 chr6,156776762,156776806,-,L2b,LINE,L2,-3,3372,3327,156776759,156780132 +6 - chr6 157119600 157119655 chr6,157119600,157119655,+,L2c,LINE,L2,3332,3387,0,157116269,157119655 -6 + chr6 157324322 157324462 chr6,157324322,157324462,+,L2c,LINE,L2,3256,3387,0,157321067,157324462 +6 + chr6 157829205 157829442 chr6,157829205,157829892,-,L1MEd,LINE,L1,-3199,2947,2087,157826006,157831978 +2 - chr6 157830193 157830573 chr6,157829920,157830586,-,L1MEd,LINE,L1,-5115,1988,1240,157824805,157831825 +1 - chr6 157872571 157872808 chr6,157872363,157872808,-,MLT1H,LTR,ERVL-MaLR,0,549,65,157872363,157872872 +5 - chr6 157874175 157874272 chr6,157874175,157874272,-,Charlie4z,DNA,hAT-Charlie,-20,147,56,157874155,157874327 +6 - chr6 157874694 157874751 chr6,157874497,157874960,+,L1MC,LINE,L1,2552,3025,-3121,157871946,157878081 -3 + chr6 157874933 157874960 chr6,157874497,157874960,+,L1MC,LINE,L1,2552,3025,-3121,157871946,157878081 -4 + chr6 158001107 158001375 chr6,158001046,158001387,+,L2a,LINE,L2,1157,1530,-1889,157999890,158003276 +1 + chr6 158001582 158001697 chr6,158001387,158001697,-,AluSx3,SINE,Alu,-4,307,1,158001383,158001697 -2 - chr6 158002174 158002230 chr6,158002148,158002230,+,L2a,LINE,L2,3344,3425,-1,157998805,158002231 +2 + chr6 158427839 158428131 chr6,158427837,158428131,+,AluSz6,SINE,Alu,1,291,-21,158427837,158428152 +2 + chr6 158428131 158428379 chr6,158428131,158428592,+,L1M5,LINE,L1,3456,3941,-2205,158424676,158430797 +5 + chr6 158988178 158988276 chr6,158986690,158989046,-,L1M3f,LINE,L1,-3225,4337,1985,158983465,158991030 -1 - chr6 158990436 158990477 chr6,158990238,158990477,-,L1M3f,LINE,L1,-5078,1487,1248,158985160,158991724 -2 - chr6 158990477 158990572 chr6,158990477,158991342,-,L1MDa,LINE,L1,-4710,1923,1010,158985767,158992351 -4 - chr6 159025946 159026041 chr6,159025856,159026252,-,MSTA,LTR,ERVL-MaLR,0,428,1,159025856,159026252 -1 - chr6 159027144 159027172 chr6,159027052,159027172,-,L1ME4b,LINE,L1,-781,111,1,159026271,159027172 -2 - chr6 159027172 159027230 chr6,159027172,159027511,+,L1PB3,LINE,L1,5818,6154,0,159021355,159027511 +4 + chr6 159042977 159043027 chr6,159042977,159043027,+,(TTTC)n,Simple_repeat,Simple_repeat,1,51,0,159042977,159043027 +6 + chr6 159108124 159108153 chr6,159108124,159108157,+,MIRc,SINE,MIR,119,151,-117,159108006,159108274 +4 + chr6 159115468 159115508 chr6,159115468,159115634,+,MIR,SINE,MIR,52,215,-47,159115417,159115681 +4 + chr6 159115787 159116053 chr6,159115787,159116600,+,LTR1B1,LTR,ERV1,1,818,0,159115787,159116600 +5 + chr6 159167333 159167354 chr6,159167333,159167771,-,MLT1D,LTR,ERVL-MaLR,0,505,3,159167333,159167773 +1 - chr6 159354514 159354673 chr6,159354514,159354717,-,MLT1C,LTR,ERVL-MaLR,-258,209,1,159354256,159354717 +1 - chr6 159396320 159396372 chr6,159396320,159396372,+,A-rich,Low_complexity,Low_complexity,1,52,0,159396320,159396372 +6 + chr6 159586955 159587648 chr6,159586938,159587648,-,L1MEj,LINE,L1,-1154,1006,246,159585784,159587893 +5 - chr6 159588169 159588467 chr6,159588097,159588467,-,MLT1J1,LTR,ERVL-MaLR,-18,426,24,159588079,159588490 +4 - chr6 159589094 159589169 chr6,159589094,159589252,+,L2b,LINE,L2,2623,2779,-640,159586472,159589892 -1 + chr6 159902326 159902510 chr6,159902326,159902644,+,MER33,DNA,hAT-Charlie,1,324,0,159902326,159902644 +5 + chr6 160003635 160003989 chr6,160003635,160003989,-,L2a,LINE,L2,-1,3425,3044,160003634,160007032 +6 - chr6 160004777 160005217 chr6,160004777,160005217,-,LTR45B,LTR,ERV1,0,525,6,160004777,160005222 +6 - chr6 160006978 160007552 chr6,160006978,160007552,-,L1ME3F,LINE,L1,-327,5916,5305,160006651,160012856 +6 - chr6 160007566 160007664 chr6,160007566,160007702,-,L1MEh,LINE,L1,-861,1374,1236,160006705,160008937 +1 - chr6 160108595 160108666 chr6,160108595,160108666,+,(TCCT)n,Simple_repeat,Simple_repeat,1,73,0,160108595,160108666 +6 + chr6 160108679 160108980 chr6,160108679,160108980,-,AluSc,SINE,Alu,-8,301,1,160108671,160108980 -6 - chr6 160109462 160109743 chr6,160109462,160109743,-,L1MC4,LINE,L1,-141,7901,7565,160109321,160117307 -6 - chr6 160109924 160110081 chr6,160109924,160110081,+,MER103C,DNA,hAT-Charlie,2,158,-139,160109923,160110220 +6 + chr6 160110314 160111183 chr6,160110314,160111183,+,L1MA9,LINE,L1,5374,6268,-44,160104941,160111227 +6 + chr6 160111183 160111245 chr6,160111183,160111245,+,Tigger2b_Pri,DNA,TcMar-Tigger,1,62,-1006,160111183,160112251 +6 + chr6 160111244 160111504 chr6,160111244,160111648,+,Tigger2,DNA,TcMar-Tigger,2273,2710,-8,160108972,160111656 +5 + chr6 160872994 160873125 chr6,160872994,160873227,+,MIR,SINE,MIR,2,259,-3,160872993,160873230 -5 + chr6 160880323 160880394 chr6,160880240,160880615,-,THE1D,LTR,ERVL-MaLR,0,381,1,160880240,160880615 +1 - chr6 160900224 160900399 chr6,160899856,160901504,+,L1PREC2,LINE,L1,1766,3439,-4716,160898091,160906220 -3 + chr6 160926994 160927162 chr6,160926775,160927209,+,MLT1A,LTR,ERVL-MaLR,1,374,0,160926775,160927209 +5 + chr6 160931164 160931204 chr6,160931164,160931204,+,(GGCGCG)n,Simple_repeat,Simple_repeat,1,40,0,160931164,160931204 +6 + chr6 160956571 160956700 chr6,160955886,160957196,-,L2a,LINE,L2,-3,3423,1999,160955883,160959194 -3 - chr6 160990616 160990704 chr6,160990616,160990704,+,L2a,LINE,L2,3334,3422,-4,160987283,160990708 -6 + chr6 160991641 160991727 chr6,160991641,160991727,+,(CGC)n,Simple_repeat,Simple_repeat,1,88,0,160991641,160991727 -6 + chr6 160991940 160991956 chr6,160991940,160991956,+,(GCC)n,Simple_repeat,Simple_repeat,1,25,-75,160991940,160992031 -6 + chr6 160991956 160991994 chr6,160991956,160991994,+,(TCCCGCC)n,Simple_repeat,Simple_repeat,1,39,0,160991956,160991994 -6 + chr6 160991994 160992039 chr6,160991994,160992039,+,(GCC)n,Simple_repeat,Simple_repeat,26,100,0,160991969,160992039 -6 + chr6 161160105 161160133 chr6,161160104,161160133,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,161160104,161160133 -5 + chr6 161160133 161160236 chr6,161160133,161160236,-,AluSx1,SINE,Alu,-184,128,26,161159949,161160261 +6 - chr6 163046584 163046638 chr6,163046437,163046638,-,MIRb,SINE,MIR,-61,207,21,163046376,163046658 +4 - chr6 163051260 163051504 chr6,163051202,163051504,-,L1MEd,LINE,L1,-6245,858,551,163044957,163052054 +1 - chr6 163051506 163051664 chr6,163051506,163051664,-,L1MEd,LINE,L1,-6609,494,329,163044897,163051992 +6 - chr6 163053925 163053956 chr6,163053896,163053956,-,L2a,LINE,L2,-8,3418,3363,163053888,163057318 +4 - chr6 163054120 163054161 chr6,163054120,163054507,+,MLT1B,LTR,ERVL-MaLR,6,396,0,163054115,163054507 -1 + chr6 163182683 163182856 chr6,163182683,163182856,-,MIRc,SINE,MIR,-46,222,31,163182637,163182886 +6 - chr6 163184825 163184918 chr6,163184755,163184974,+,Plat_L3,LINE,CR1,1453,1691,-1895,163183303,163186869 -1 + chr6 163413488 163413528 chr6,163413488,163413528,+,(CGCC)n,Simple_repeat,Simple_repeat,1,42,0,163413488,163413528 -6 + chr6 163586650 163586733 chr6,163586650,163586952,+,AluSx1,SINE,Alu,1,310,-2,163586650,163586954 -2 + chr6 163587715 163587915 chr6,163587631,163587915,+,AluSz,SINE,Alu,6,290,-22,163587626,163587937 -4 + chr6 163703904 163704005 chr6,163703408,163704012,-,MLT1H1-int,LTR,ERVL-MaLR,-782,627,5,163702626,163704016 -1 - chr6 163759511 163759841 chr6,163759511,163759862,+,L2a,LINE,L2,3054,3424,-2,163756458,163759864 +5 + chr6 164084983 164085016 chr6,164084983,164085016,+,(TTTCTT)n,Simple_repeat,Simple_repeat,1,33,0,164084983,164085016 -6 + chr6 164348300 164348399 chr6,164348215,164348399,-,L2,LINE,L2,-704,2715,2517,164347511,164350915 +4 - chr6 164828060 164828419 chr6,164828060,164828419,-,L1PB4,LINE,L1,0,6156,5774,164828060,164834192 -6 - chr6 164828435 164828735 chr6,164828435,164828735,-,AluJb,SINE,Alu,-6,306,1,164828429,164828735 -6 - chr6 164829018 164829079 chr6,164829018,164829079,+,Charlie1b,DNA,hAT-Charlie,1,61,-462,164829018,164829541 +6 + chr6 164829096 164829494 chr6,164829096,164829494,-,MLT1E2,LTR,ERVL-MaLR,-6,621,230,164829090,164829723 -6 - chr6 164829685 164830953 chr6,164829685,164830953,+,Charlie1a,DNA,hAT-Charlie,70,1449,-6,164829616,164830959 +6 + chr6 164831120 164831630 chr6,164831120,164831676,+,MLT2A2,LTR,ERVL,1,553,-1,164831120,164831677 +5 + chr6 165754189 165754288 chr6,165754176,165754288,+,L2c,LINE,L2,3254,3377,-10,165750923,165754298 +1 + chr6 165774853 165774866 chr6,165774837,165774866,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,165774837,165774866 +2 + chr6 165910808 165910830 chr6,165910770,165910830,+,MIRb,SINE,MIR,19,77,-191,165910752,165911021 -4 + chr6 165939488 165939584 chr6,165939488,165939584,-,L1PB2,LINE,L1,-3,6148,6053,165939485,165945636 +6 - chr6 165939725 165939845 chr6,165939725,165939845,-,MIRb,SINE,MIR,-126,142,14,165939599,165939858 +6 - chr6 165946954 165947220 chr6,165946954,165947878,-,L1MC5a,LINE,L1,-292,2485,1455,165946662,165949332 +2 - chr6 165948223 165948292 chr6,165948211,165948292,+,LTR81A,LTR,Gypsy,282,364,-986,165947930,165949278 -5 + chr6 165987955 165987996 chr6,165987955,165987996,+,(TG)n,Simple_repeat,Simple_repeat,1,41,0,165987955,165987996 -1 + chr6 166113012 166113216 chr6,166113012,166113216,+,L4_B_Mam,LINE,RTE-X,3228,3438,-1503,166109785,166114719 +6 + chr6 166243473 166243643 chr6,166243473,166243643,-,MER5A,DNA,hAT-Charlie,-4,185,15,166243469,166243657 -6 - chr6 166383921 166384230 chr6,166383921,166384230,+,AluSx,SINE,Alu,1,309,-3,166383921,166384233 +6 + chr6 166384241 166384543 chr6,166384241,166384543,+,AluSz,SINE,Alu,2,303,-9,166384240,166384552 +6 + chr6 166384600 166384824 chr6,166384600,166384925,+,L1ME4b,LINE,L1,351,709,-183,166384250,166385108 +5 + chr6 166388136 166388152 chr6,166388046,166388152,+,L1MC5a,LINE,L1,1865,1969,-808,166386182,166388960 +1 + chr6 166388307 166388449 chr6,166388307,166388449,+,MER103C,DNA,hAT-Charlie,70,217,-80,166388238,166388529 +6 + chr6 166388449 166388737 chr6,166388449,166388737,-,AluSz6,SINE,Alu,-22,290,1,166388427,166388737 -6 - chr6 166388737 166388769 chr6,166388737,166388769,+,MER103C,DNA,hAT-Charlie,218,241,-56,166388520,166388825 +6 + chr6 166388926 166389098 chr6,166388926,166389098,+,MIRb,SINE,MIR,71,236,-32,166388856,166389130 +6 + chr6 166389429 166389904 chr6,166389429,166389904,+,L1MB7,LINE,L1,5738,6168,-16,166383692,166389920 +6 + chr6 166460663 166460678 chr6,166460646,166460678,+,(GCAGG)n,Simple_repeat,Simple_repeat,1,32,0,166460646,166460678 -5 + chr6 166904300 166904339 chr6,166904196,166904339,-,MER5A1,DNA,hAT-Charlie,-4,162,14,166904192,166904352 -2 - chr6 166969729 166969812 chr6,166969729,166969991,-,LTR10B1,LTR,ERV1,-223,300,1,166969506,166969991 +2 - chr6 166972739 166972788 chr6,166971893,166973218,-,MER51-int,LTR,ERV1,-6381,1435,1,166965512,166973218 +3 - chr6 167237508 167237536 chr6,167236774,167237536,+,MER4D1,LTR,ERV1,1,900,0,167236774,167237536 -5 + chr6 167666897 167667257 chr6,167666897,167667257,+,L1MB3,LINE,L1,5790,6180,-3,167661108,167667260 -6 + chr6 167681060 167681416 chr6,167681060,167681416,+,MLT1A,LTR,ERVL-MaLR,1,374,0,167681060,167681416 -6 + chr6 167681702 167681741 chr6,167681702,167681741,+,(GGAGGTG)n,Simple_repeat,Simple_repeat,1,39,0,167681702,167681741 -6 + chr6 167784537 167784717 chr6,167784446,167784717,+,L1ME4a,LINE,L1,5483,5609,-515,167778964,167785232 -5 + chr6 167784717 167785027 chr6,167784717,167785027,+,AluSx,SINE,Alu,1,307,-5,167784717,167785032 -6 + chr6 167785027 167785359 chr6,167785027,167785359,+,L1ME4a,LINE,L1,5610,5894,-230,167779418,167785589 -6 + chr6 167785380 167785496 chr6,167785380,167785682,+,AluYk2,SINE,Alu,1,302,-9,167785380,167785691 -2 + chr6 167786979 167787028 chr6,167786979,167787028,+,(CTCCTTT)n,Simple_repeat,Simple_repeat,1,52,0,167786979,167787028 -6 + chr6 167790947 167790984 chr6,167790902,167790984,-,MER53,DNA,hAT,-106,87,3,167790796,167790986 +4 - chr6 167796881 167796932 chr6,167796881,167796932,+,GA-rich,Low_complexity,Low_complexity,1,51,0,167796881,167796932 +6 + chr6 167797628 167798043 chr6,167797628,167798043,+,LTR3A,LTR,ERVK,1,422,-62,167797628,167798105 +6 + chr6 167798200 167798248 chr6,167798200,167798279,+,MER33,DNA,hAT-Charlie,238,318,-6,167797963,167798285 +5 + chr6 167823876 167824015 chr6,167823702,167824015,-,AluY,SINE,Alu,-6,305,1,167823696,167824015 +5 - chr6 167824597 167824806 chr6,167824597,167824890,-,UCON29,DNA,PiggyBac?,-121,318,1,167824476,167824890 +1 - chr6 167975924 167976065 chr6,167975881,167976065,-,MER33,DNA,hAT-Charlie,-48,276,79,167975833,167976143 +5 - chr6 167979545 167979766 chr6,167979353,167979766,+,L1MB7,LINE,L1,129,578,-6289,167979225,167986055 -4 + chr6 167979760 167979776 chr6,167979760,167979901,+,L1MB7,LINE,L1,687,834,-6033,167979074,167985934 -1 + chr6 167994092 167994153 chr6,167994092,167994271,-,HAL1b,LINE,L1,-1041,1380,1199,167993051,167995469 +5 - chr6 167994172 167994271 chr6,167994092,167994271,-,HAL1b,LINE,L1,-1041,1380,1199,167993051,167995469 +5 - chr6 167994347 167994464 chr6,167994347,167994643,+,AluSx,SINE,Alu,1,297,-15,167994347,167994658 -2 + chr6 167995513 167995935 chr6,167995487,167995935,-,LTR69,LTR,ERVL,-6,582,73,167995481,167996007 +4 - chr6 168194391 168194522 chr6,168194391,168194522,-,MLT1A1,LTR,ERVL-MaLR,-14,394,251,168194377,168194772 -6 - chr6 168226417 168226517 chr6,168226417,168226761,+,Tigger20a,DNA,TcMar-Tigger,141,502,-471,168226277,168227232 -1 + chr6 168229737 168229854 chr6,168229737,168229912,+,MER5B,DNA,hAT-Charlie,1,170,-8,168229737,168229920 +4 + chr6 168239025 168239081 chr6,168238960,168239081,+,LTR81A,LTR,Gypsy,12,148,-1202,168238949,168240283 +2 + chr6 168258868 168258980 chr6,168258675,168258980,-,AluY,SINE,Alu,-18,293,1,168258657,168258980 -2 - chr6 168262294 168262581 chr6,168262294,168262609,+,AluSx1,SINE,Alu,1,311,-1,168262294,168262610 +5 + chr6 168298749 168298963 chr6,168298749,168298963,+,MIRc,SINE,MIR,20,229,-39,168298730,168299002 -6 + chr6 168299296 168299388 chr6,168299296,168299388,-,L3,LINE,CR1,-1397,2702,2608,168297899,168301995 +6 - chr6 168375166 168375355 chr6,168375166,168375364,+,MIRb,SINE,MIR,14,230,-38,168375153,168375402 +5 + chr6 168723079 168723121 chr6,168722767,168723121,+,THE1A,LTR,ERVL-MaLR,1,354,-1,168722767,168723122 +2 + chr6 169033401 169033427 chr6,169033401,169033427,+,(AAAAT)n,Simple_repeat,Simple_repeat,1,26,0,169033401,169033427 +6 + chr6 169033695 169033751 chr6,169033695,169033751,+,MLT1H,LTR,ERVL-MaLR,489,543,-6,169033207,169033757 +6 + chr6 169034227 169034641 chr6,169034227,169034641,-,MSTB,LTR,ERVL-MaLR,0,426,1,169034227,169034641 +6 - chr6 169161068 169161165 chr6,169160796,169161165,-,MLT1B,LTR,ERVL-MaLR,-4,386,1,169160792,169161165 +4 - chr6 169162134 169162301 chr6,169161298,169162468,+,L2,LINE,L2,776,2101,-1318,169160523,169163786 -1 + chr6 169175304 169175516 chr6,169175267,169175516,+,HAL1b,LINE,L1,1214,1480,-941,169174054,169176457 -5 + chr6 169175607 169175671 chr6,169175607,169175766,+,HAL1b,LINE,L1,1625,1779,-642,169173983,169176408 -2 + chr6 169179276 169179394 chr6,169179237,169179591,-,THE1A,LTR,ERVL-MaLR,0,355,1,169179237,169179591 +3 - chr6 169182684 169182740 chr6,169182607,169182961,-,THE1A,LTR,ERVL-MaLR,0,355,1,169182607,169182961 +1 - chr6 169213337 169213358 chr6,169213337,169213358,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,169213337,169213358 +6 + chr6 169287177 169287315 chr6,169287177,169287315,-,MLT1J,LTR,ERVL-MaLR,-224,288,145,169286953,169287459 +6 - chr6 169287315 169287476 chr6,169287315,169287539,+,Tigger4a,DNA,TcMar-Tigger,1,228,-8,169287315,169287547 -1 + chr6 169374259 169375003 chr6,169374259,169375003,-,L1ME3,LINE,L1,-140,6022,5261,169374119,169380263 +6 - chr6 169375018 169375159 chr6,169375018,169375159,-,L1ME3,LINE,L1,-940,5206,5059,169374078,169380217 +6 - chr6 169388201 169388338 chr6,169388153,169388338,-,MLT1O,LTR,ERVL-MaLR,-338,204,18,169387815,169388355 +4 - chr6 169426839 169426875 chr6,169426839,169426875,+,(CTGCCTG)n,Simple_repeat,Simple_repeat,1,39,0,169426839,169426875 -6 + chr6 169725827 169725854 chr6,169725736,169726118,+,MER65A,LTR,ERV1,53,445,0,169725684,169726118 -1 + chr6 169738694 169738737 chr6,169732315,169738737,-,L1PA8A,LINE,L1,-5,6441,8,169732310,169738744 -2 - chr6 169738737 169738838 chr6,169738737,169738838,-,THE1D,LTR,ERVL-MaLR,-76,305,205,169738661,169739042 -6 - chr6 169738847 169738956 chr6,169738847,169738956,+,L4_B_Mam,LINE,RTE-X,4073,4194,-796,169734775,169739752 +6 + chr6 169770413 169770474 chr6,169770390,169770474,-,L1MC,LINE,L1,-2053,5829,5746,169768337,169776219 -1 - chr6 169770612 169770786 chr6,169770612,169770786,-,AluJb,SINE,Alu,-5,307,134,169770607,169770919 -6 - chr6 169770930 169770970 chr6,169770930,169770970,+,(TTTGTTT)n,Simple_repeat,Simple_repeat,1,42,0,169770930,169770970 +6 + chr6 169771054 169771382 chr6,169771054,169771382,-,AluSg7,SINE,Alu,0,309,1,169771054,169771382 -6 - chr6 169771382 169771413 chr6,169771382,169771413,+,(TTTTTTC)n,Simple_repeat,Simple_repeat,5,33,0,169771378,169771413 +6 + chr6 169771550 169771623 chr6,169771550,169771623,-,L1M5,LINE,L1,-1569,4577,4501,169769981,169776123 -6 - chr6 169771650 169771755 chr6,169771650,169771755,+,L2,LINE,L2,2520,2638,-781,169769131,169772536 +6 + chr6 169771755 169772040 chr6,169771755,169772040,+,AluSx1,SINE,Alu,3,310,-2,169771753,169772042 +6 + chr6 169788790 169789002 chr6,169788411,169789002,-,L1MC4,LINE,L1,-2,8040,7406,169788409,169796407 +5 - chr6 169789393 169789433 chr6,169789393,169789433,+,MER5A,DNA,hAT-Charlie,133,170,-19,169789261,169789452 -6 + chr6 169789519 169789732 chr6,169789519,169789732,+,MIRb,SINE,MIR,24,262,-6,169789496,169789738 -6 + chr6 169802569 169802586 chr6,169802569,169802586,-,MER57B1,LTR,ERV1,0,401,386,169802569,169802971 -6 - chr6 169802586 169802873 chr6,169802586,169802893,+,AluSp,SINE,Alu,1,309,-4,169802586,169802897 +5 + chr6 170162525 170162627 chr6,170162525,170162627,-,MER5B,DNA,hAT-Charlie,-67,111,9,170162458,170162635 -6 - chr6 170254357 170254569 chr6,170254357,170254569,-,L2b,LINE,L2,-4,3371,3095,170254353,170257663 +6 - chr6 170258370 170258397 chr6,170258214,170258397,-,MIRc,SINE,MIR,-39,229,66,170258175,170258462 +4 - chr6 170268096 170268285 chr6,170268096,170268507,+,MLT1C,LTR,ERVL-MaLR,1,461,-6,170268096,170268513 -2 + chr6 170276711 170276762 chr6,170276711,170276883,-,Tigger19a,DNA,TcMar-Tigger,-35,288,127,170276676,170277009 +1 - chr6 170279591 170279640 chr6,170279591,170279640,-,L2b,LINE,L2,-7,3368,3320,170279584,170282959 -6 - chr6 170414139 170414471 chr6,170413831,170414471,-,HAL1,LINE,L1,-1179,1328,634,170412652,170415104 -1 - chr6 170416933 170417135 chr6,170416933,170417135,-,Charlie29a,DNA,hAT-Charlie,0,719,511,170416933,170417645 -6 - chr6 170417269 170417309 chr6,170417269,170417309,+,(GCAGG)n,Simple_repeat,Simple_repeat,1,42,0,170417269,170417309 +6 + chr6 170418731 170419041 chr6,170418731,170419041,+,AluY,SINE,Alu,1,311,0,170418731,170419041 +6 + chr6 170696100 170696139 chr6,170695968,170696139,+,MIRb,SINE,MIR,50,213,-55,170695919,170696194 +2 + chr6 170696797 170696920 chr6,170696797,170696920,-,L2c,LINE,L2,-1,3386,3242,170696796,170700161 -6 - chr6 170725197 170725333 chr6,170725037,170725333,+,AluSx1,SINE,Alu,2,299,-13,170725036,170725346 +1 + chr6 170725333 170725396 chr6,170725333,170725435,-,Charlie20a,DNA,hAT-Charlie,-269,538,436,170725064,170725870 -4 - chr6 170727931 170727947 chr6,170727478,170727947,-,Ricksha_0,DNA,MULE-MuDR,-1,1732,1325,170727477,170729271 -2 - chr6 170728037 170728218 chr6,170728037,170728218,+,L1M5,LINE,L1,5606,5784,-340,170722432,170728558 +6 + chr6 170735751 170735866 chr6,170735074,170735866,+,MER4D1,LTR,ERV1,2,832,-68,170735073,170735934 +1 + chr6 170735866 170735885 chr6,170735866,170736298,-,MER4A,LTR,ERV1,-2,763,1,170735864,170736298 -5 - chr6 170736173 170736298 chr6,170735866,170736298,-,MER4A,LTR,ERV1,-2,763,1,170735864,170736298 +5 - chr6 170736348 170736368 chr6,170736298,170736368,+,MER4D1,LTR,ERV1,824,900,0,170735475,170736368 +2 + chr6 170736298 170736368 chr6,170736298,170736368,+,MER4D1,LTR,ERV1,824,900,0,170735475,170736368 -6 + chr6 170737501 170737537 chr6,170737403,170737537,-,MLT1H2,LTR,ERVL-MaLR,-34,515,374,170737369,170737910 +4 - chr6 170737715 170737777 chr6,170737715,170737885,-,MLT1H2,LTR,ERVL-MaLR,-275,214,72,170737440,170737956 +1 - chr7 71325 71404 chr7,71325,71404,+,CR1_Mam,LINE,CR1,305,382,-1822,71021,73226 -6 + chr7 71537 71571 chr7,71537,71685,+,MIRb,SINE,MIR,5,175,-93,71533,71778 -2 + chr7 77038 77127 chr7,76707,77127,+,(CCT)n,Simple_repeat,Simple_repeat,1,423,0,76707,77127 +1 + chr7 77311 77353 chr7,77311,77376,+,OldhAT1,DNA,hAT-Ac,243,302,-2546,77069,79922 +4 + chr7 136006 136118 chr7,136006,136118,+,Tigger13a,DNA,TcMar-Tigger,115,239,-532,135892,136650 -6 + chr7 136118 136271 chr7,136118,136735,+,MER41B,LTR,ERV1,1,634,0,136118,136735 -2 + chr7 144444 144517 chr7,144367,144517,+,L2a,LINE,L2,3185,3348,-78,141183,144595 -5 + chr7 144784 144811 chr7,144784,144859,-,L2c,LINE,L2,-77,3310,3237,144707,148095 +2 - chr7 148328 148714 chr7,146318,148890,-,MER57-int,LTR,ERV1,0,7537,4824,146318,153713 +5 - chr7 150236 150270 chr7,150236,150270,+,(GGCAG)n,Simple_repeat,Simple_repeat,1,36,0,150236,150270 +6 + chr7 150599 151006 chr7,150599,151006,-,MER31B,LTR,ERV1,-26,440,1,150573,151006 -6 - chr7 151334 151610 chr7,151334,151610,-,AluSg,SINE,Alu,-31,279,6,151303,151615 -6 - chr7 152070 152329 chr7,152070,152329,-,AluJo,SINE,Alu,-28,284,2,152042,152330 -6 - chr7 153414 153521 chr7,153414,153521,-,MLT1A0,LTR,ERVL-MaLR,-16,349,220,153398,153740 -5 - chr7 153537 153640 chr7,153537,153640,-,MLT1A0,LTR,ERVL-MaLR,-208,157,52,153329,153691 -6 - chr7 153888 154303 chr7,153888,154303,-,LTR33,LTR,ERVL,-7,508,50,153881,154352 -5 - chr7 154458 154925 chr7,154458,154925,+,MER63C,DNA,hAT-Blackjack,423,924,-6,154036,154931 +6 + chr7 162283 162325 chr7,162283,162325,+,(GT)n,Simple_repeat,Simple_repeat,1,42,0,162283,162325 -6 + chr7 164191 164215 chr7,164191,164215,+,(CAGG)n,Simple_repeat,Simple_repeat,1,25,0,164191,164215 -6 + chr7 164242 164301 chr7,164242,164301,-,L2c,LINE,L2,-226,3161,3103,164016,167403 +6 - chr7 229014 229044 chr7,229014,229044,+,(CCCA)n,Simple_repeat,Simple_repeat,1,31,0,229014,229044 -6 + chr7 294381 294422 chr7,294381,294479,-,L3,LINE,CR1,-204,3895,3800,294177,298278 -5 - chr7 379458 379515 chr7,379458,379515,+,MIRc,SINE,MIR,111,165,-103,379348,379618 +6 + chr7 381606 381664 chr7,381606,381664,+,L1MD2,LINE,L1,209,266,-6143,381398,387807 +6 + chr7 381712 382484 chr7,381712,382484,+,L1MD2,LINE,L1,468,1324,-5085,381245,387569 +6 + chr7 382484 382579 chr7,382484,382579,+,GA-rich,Low_complexity,Low_complexity,1,98,0,382484,382579 +6 + chr7 382580 382712 chr7,382580,382740,+,L1MD2,LINE,L1,1321,1503,-4999,381260,387739 +5 + chr7 495920 496042 chr7,495920,496042,-,MIRc,SINE,MIR,-119,149,30,495801,496071 +6 - chr7 521820 521862 chr7,521820,521862,+,G-rich,Low_complexity,Low_complexity,1,44,0,521820,521862 +6 + chr7 524203 524280 chr7,524203,524423,+,MER33,DNA,hAT-Charlie,5,236,-88,524199,524511 +4 + chr7 524854 524886 chr7,524816,524886,-,L2b,LINE,L2,-512,2907,2835,524304,527720 -2 - chr7 524919 525225 chr7,524919,525225,+,AluJo,SINE,Alu,1,305,-7,524919,525232 +6 + chr7 880060 880353 chr7,880060,880353,+,AluSp,SINE,Alu,2,297,-16,880059,880369 -6 + chr7 880585 880691 chr7,880585,880691,+,MIRc,SINE,MIR,19,130,-138,880567,880829 -6 + chr7 880870 881164 chr7,880870,881164,-,AluSx1,SINE,Alu,-18,294,1,880852,881164 +6 - chr7 881165 881575 chr7,881165,881575,-,L1ME1,LINE,L1,0,6179,5753,881165,887327 +6 - chr7 881684 882307 chr7,881684,882307,-,L1PREC2,LINE,L1,-8,6152,5520,881676,887826 +6 - chr7 884782 885079 chr7,884782,885079,-,AluJb,SINE,Alu,-9,303,3,884773,885081 +6 - chr7 1043419 1043434 chr7,1043261,1043434,+,MER104,DNA,TcMar-Tc2,4,181,0,1043258,1043434 +2 + chr7 1043434 1043516 chr7,1043434,1043516,+,MIR,SINE,MIR,154,258,-4,1043281,1043520 +6 + chr7 1075941 1076204 chr7,1075899,1076204,+,L1M4a2,LINE,L1,144,454,-2202,1075756,1078406 +2 + chr7 1160609 1160623 chr7,1160609,1160702,-,L1MC4,LINE,L1,-17,7978,7897,1160592,1168598 -4 - chr7 1162352 1162543 chr7,1162317,1162576,+,LTR62,LTR,ERVL,150,397,-312,1162168,1162888 +3 + chr7 1162685 1162728 chr7,1162576,1162871,-,AluSq2,SINE,Alu,0,313,1,1162576,1162871 -3 - chr7 1162962 1163166 chr7,1162871,1163166,+,LTR62,LTR,ERVL,398,708,-1,1162474,1163167 +2 + chr7 1163343 1163484 chr7,1163240,1163484,-,Tigger17a,DNA,TcMar-Tigger,-78,576,328,1163162,1163811 -2 - chr7 1164268 1164469 chr7,1164268,1164469,-,L1MC4,LINE,L1,-564,7478,7269,1163704,1171737 -6 - chr7 1164475 1165007 chr7,1164475,1165007,-,MLT2B3,LTR,ERVL,0,554,32,1164475,1165038 -5 - chr7 1165024 1165267 chr7,1165024,1165490,-,L1MC4,LINE,L1,-787,7255,6774,1164237,1172263 -5 - chr7 1269117 1269222 chr7,1269117,1269222,-,OldhAT1,DNA,hAT-Ac,-849,1999,1909,1268268,1271130 -6 - chr7 1463985 1464008 chr7,1463985,1464095,+,MER103C,DNA,hAT-Charlie,130,239,-58,1463856,1464153 +5 + chr7 1464747 1464776 chr7,1464747,1464776,+,(C)n,Simple_repeat,Simple_repeat,1,29,0,1464747,1464776 -6 + chr7 1464844 1464897 chr7,1464844,1464897,+,MIR3,SINE,MIR,62,116,-92,1464783,1464989 -6 + chr7 1464988 1465292 chr7,1464988,1465292,-,AluSx,SINE,Alu,-9,303,1,1464979,1465292 +6 - chr7 1465292 1465587 chr7,1465292,1465587,-,AluSx,SINE,Alu,-15,297,1,1465277,1465587 +6 - chr7 1465588 1465703 chr7,1465588,1465703,-,MIRc,SINE,MIR,-106,162,37,1465482,1465739 +6 - chr7 1508655 1508773 chr7,1508495,1508839,-,MLT1C,LTR,ERVL-MaLR,0,505,100,1508495,1508938 +5 - chr7 1509305 1509343 chr7,1509288,1509343,-,MLT1C,LTR,ERVL-MaLR,-362,105,51,1508926,1509393 +4 - chr7 1509415 1509427 chr7,1509415,1509588,+,L2a,LINE,L2,2945,3143,-283,1506471,1509871 -1 + chr7 1570403 1570533 chr7,1570403,1570543,-,MIR,SINE,MIR,-4,258,109,1570399,1570651 -4 - chr7 1574715 1574861 chr7,1574606,1574861,-,Tigger18a,DNA,TcMar-Tigger,-571,281,3,1574035,1574863 -2 - chr7 1575887 1576062 chr7,1575887,1576083,+,MIR3,SINE,MIR,3,208,0,1575885,1576083 +5 + chr7 1579287 1579404 chr7,1579261,1579425,-,FRAM,SINE,Alu,-9,167,1,1579252,1579425 -3 - chr7 1583162 1583269 chr7,1582937,1583505,-,L1MB3,LINE,L1,-2,6181,5648,1582935,1589152 -5 - chr7 1584384 1584461 chr7,1584366,1584461,-,L2b,LINE,L2,0,3375,3266,1584366,1587726 -5 - chr7 1584889 1584918 chr7,1584889,1584918,+,(GCT)n,Simple_repeat,Simple_repeat,1,31,0,1584889,1584918 +6 + chr7 1587785 1587904 chr7,1587785,1587904,-,MIR3,SINE,MIR,-32,176,53,1587753,1587956 -6 - chr7 1587974 1588135 chr7,1587974,1588135,-,MIR,SINE,MIR,-72,190,4,1587902,1588138 -6 - chr7 1588238 1588328 chr7,1588238,1588328,-,LTR16C,LTR,ERVL,-16,473,388,1588222,1588715 -6 - chr7 1588328 1588791 chr7,1588328,1588791,-,MLT2B1,LTR,ERVL,-1,519,1,1588327,1588791 -6 - chr7 1588791 1588945 chr7,1588791,1588945,-,LTR16C,LTR,ERVL,-102,387,194,1588689,1589138 -6 - chr7 1589121 1589485 chr7,1589121,1589485,-,MLT1H1,LTR,ERVL-MaLR,-66,489,151,1589055,1589635 -6 - chr7 1589486 1589626 chr7,1589486,1589830,-,L1MB3,LINE,L1,-11,6172,5823,1589475,1595652 -5 - chr7 1620654 1620756 chr7,1620582,1620828,-,L1ME3Cz,LINE,L1,-314,683,565,1620268,1621392 -1 - chr7 1621148 1621392 chr7,1621148,1621392,-,L1M5,LINE,L1,-841,5305,5061,1620307,1626452 -6 - chr7 1692081 1692174 chr7,1692081,1692174,+,MIRc,SINE,MIR,54,140,-90,1692028,1692264 -6 + chr7 1692810 1692887 chr7,1692733,1692887,+,MIRb,SINE,MIR,61,218,-50,1692673,1692937 -5 + chr7 1692921 1693073 chr7,1692921,1693073,+,MIRb,SINE,MIR,17,185,-77,1692905,1693150 -5 + chr7 1738745 1739071 chr7,1738745,1739071,-,L2b,LINE,L2,-35,3340,3018,1738710,1742088 +5 - chr7 1838586 1838764 chr7,1838258,1838764,+,L1MB8,LINE,L1,5570,6095,-83,1832689,1838847 +1 + chr7 1849047 1849074 chr7,1849047,1849074,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,1849047,1849074 +6 + chr7 1849074 1849173 chr7,1849074,1849173,+,(TGCACA)n,Simple_repeat,Simple_repeat,4,110,0,1849071,1849173 +6 + chr7 1849794 1849829 chr7,1849794,1849829,+,(GCAGCG)n,Simple_repeat,Simple_repeat,1,37,0,1849794,1849829 +6 + chr7 2447472 2447772 chr7,2447472,2447772,-,AluSz,SINE,Alu,-12,300,1,2447460,2447772 -6 - chr7 2447796 2447850 chr7,2447796,2447861,-,MER41B,LTR,ERV1,-88,546,481,2447708,2448341 -5 - chr7 2946608 2946747 chr7,2946608,2946747,+,MER117,DNA,hAT-Charlie,11,158,-39,2946598,2946786 +6 + chr7 2946978 2947091 chr7,2946978,2947411,-,Charlie4a,DNA,hAT-Charlie,-40,468,20,2946938,2947430 -5 - chr7 3148981 3149068 chr7,3148898,3149283,-,MSTA,LTR,ERVL-MaLR,0,428,1,3148898,3149283 +3 - chr7 3166031 3166131 chr7,3165845,3166160,+,AluJo,SINE,Alu,1,304,-8,3165845,3166168 -3 + chr7 3196843 3196930 chr7,3196843,3196946,+,L2b,LINE,L2,3260,3375,0,3193584,3196946 -2 + chr7 3198204 3198256 chr7,3198204,3198321,-,L1MDa,LINE,L1,-2451,4086,3970,3195753,3202290 +1 - chr7 5072390 5072414 chr7,5072390,5072414,+,(GCT)n,Simple_repeat,Simple_repeat,1,24,0,5072390,5072414 +6 + chr7 5427076 5427116 chr7,5427076,5427116,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,42,0,5427076,5427116 -6 + chr7 5427179 5427206 chr7,5427179,5427206,+,(GT)n,Simple_repeat,Simple_repeat,1,27,0,5427179,5427206 -6 + chr7 5427206 5427222 chr7,5427206,5427222,+,(GC)n,Simple_repeat,Simple_repeat,1,16,0,5427206,5427222 -6 + chr7 5427221 5427244 chr7,5427221,5427244,+,(GT)n,Simple_repeat,Simple_repeat,1,23,0,5427221,5427244 -6 + chr7 5428731 5428754 chr7,5428727,5428754,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,5428727,5428754 +1 + chr7 5428727 5428754 chr7,5428727,5428754,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,5428727,5428754 -1 + chr7 5476165 5476189 chr7,5476165,5476189,+,(GCAC)n,Simple_repeat,Simple_repeat,1,24,0,5476165,5476189 +6 + chr7 5476457 5476768 chr7,5476457,5476768,-,AluJo,SINE,Alu,-4,308,1,5476453,5476768 -6 - chr7 5476883 5477030 chr7,5476883,5477186,-,AluY,SINE,Alu,-8,303,1,5476875,5477186 -4 - chr7 5478672 5478881 chr7,5478672,5478881,+,(CACG)n,Simple_repeat,Simple_repeat,1,216,0,5478672,5478881 +6 + chr7 5479605 5479646 chr7,5479605,5479646,+,(CCTGCGG)n,Simple_repeat,Simple_repeat,1,42,0,5479605,5479646 +6 + chr7 5556731 5556742 chr7,5556698,5556742,+,G-rich,Low_complexity,Low_complexity,1,45,0,5556698,5556742 +1 + chr7 5557012 5557152 chr7,5557012,5557152,+,L1ME2,LINE,L1,5886,6023,-139,5551127,5557291 +6 + chr7 5680401 5680461 chr7,5680401,5680700,-,AluSc,SINE,Alu,-11,298,2,5680390,5680701 +1 - chr7 6085145 6085256 chr7,6085136,6085424,-,AluSx3,SINE,Alu,-29,282,1,6085107,6085424 -5 - chr7 6665300 6665521 chr7,6665300,6665597,-,AluSz6,SINE,Alu,-13,299,1,6665287,6665597 -5 - chr7 6708323 6708395 chr7,6708323,6708543,+,LTR37-int,LTR,ERV1,26,283,-3777,6708298,6712320 +4 + chr7 6708568 6708845 chr7,6708543,6708845,-,AluSx,SINE,Alu,-9,303,2,6708534,6708846 -2 - chr7 6708845 6708901 chr7,6708845,6709216,+,LTR37-int,LTR,ERV1,284,652,-3408,6708562,6712624 +5 + chr7 7266908 7267063 chr7,7266427,7267063,+,MER41B,LTR,ERV1,1,634,0,7266427,7267063 +1 + chr7 7267063 7267218 chr7,7267063,7267218,+,MLT2B1,LTR,ERVL,366,520,0,7266698,7267218 +6 + chr7 7267277 7267442 chr7,7267277,7267506,+,MLT1L,LTR,ERVL-MaLR,250,499,-111,7267028,7267617 +4 + chr7 7550937 7551064 chr7,7550937,7551064,-,MER91B,DNA,hAT-Tip100,-34,156,1,7550903,7551064 +6 - chr7 7551115 7551150 chr7,7551115,7551150,+,(TTATTT)n,Simple_repeat,Simple_repeat,1,36,0,7551115,7551150 -6 + chr7 7551230 7551476 chr7,7551230,7552184,-,LTR78,LTR,ERV1,-29,1275,202,7551201,7552385 +2 - chr7 7552159 7552184 chr7,7551230,7552184,-,LTR78,LTR,ERV1,-29,1275,202,7551201,7552385 +4 - chr7 7552252 7552379 chr7,7552252,7552379,-,LTR78,LTR,ERV1,-1166,130,1,7551086,7552379 +6 - chr7 7552674 7552714 chr7,7552674,7552714,+,(ATAAT)n,Simple_repeat,Simple_repeat,1,36,0,7552674,7552714 -6 + chr7 7552717 7552750 chr7,7552717,7552750,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,7552717,7552750 -5 + chr7 7555156 7555189 chr7,7555051,7555240,+,MIR,SINE,MIR,1,183,-79,7555051,7555319 -3 + chr7 7564237 7564298 chr7,7563891,7564298,-,MLT1J1,LTR,ERVL-MaLR,0,444,68,7563891,7564365 +4 - chr7 7565914 7566082 chr7,7565778,7566082,+,AluSc,SINE,Alu,1,304,-5,7565778,7566087 -4 + chr7 7566191 7566577 chr7,7566191,7566577,+,L2b,LINE,L2,2940,3373,-2,7563252,7566579 -6 + chr7 7740686 7740784 chr7,7740586,7740784,-,X6A_LINE,LINE,CR1,-325,755,559,7740261,7741342 +4 - chr7 7740799 7740832 chr7,7740799,7740832,+,(TTTC)n,Simple_repeat,Simple_repeat,1,35,0,7740799,7740832 -6 + chr7 7742036 7742100 chr7,7742036,7742100,+,L2b,LINE,L2,3311,3374,-1,7738726,7742101 -6 + chr7 7742432 7742457 chr7,7742432,7742457,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,7742432,7742457 -6 + chr7 7950167 7950287 chr7,7950167,7950287,-,MIRb,SINE,MIR,-58,210,88,7950109,7950374 +6 - chr7 7958183 7958288 chr7,7958139,7958288,+,MER5A,DNA,hAT-Charlie,11,165,-24,7958129,7958312 -5 + chr7 7958420 7958618 chr7,7958420,7958824,-,MSTD,LTR,ERVL-MaLR,0,396,17,7958420,7958840 +2 - chr7 8303741 8304140 chr7,8298113,8304140,-,L1PA3,LINE,L1,-1,6154,124,8298112,8304263 -1 - chr7 8340383 8340556 chr7,8340235,8340639,-,LTR88b,LTR,Gypsy?,-404,433,1,8339831,8340639 -5 - chr7 8341074 8341105 chr7,8341074,8341105,+,(AGCAG)n,Simple_repeat,Simple_repeat,1,31,0,8341074,8341105 +6 + chr7 8341252 8341343 chr7,8341252,8342543,-,MLT1I-int,LTR,ERVL-MaLR,-1,1386,28,8341251,8342570 -5 - chr7 8343193 8343254 chr7,8343193,8343254,+,L2b,LINE,L2,3313,3374,-1,8339881,8343255 +6 + chr7 8344498 8344516 chr7,8344498,8344562,+,(AT)n,Simple_repeat,Simple_repeat,1,68,0,8344498,8344562 +5 + chr7 9082557 9082754 chr7,9082238,9082754,-,MLT1E1,LTR,ERVL-MaLR,-55,599,16,9082183,9082769 +5 - chr7 9083050 9083740 chr7,9083050,9083740,+,L1MC,LINE,L1,4958,5676,-657,9078093,9084397 -6 + chr7 9083783 9083903 chr7,9083783,9083903,+,L3,LINE,CR1,2927,3064,-1035,9080857,9084938 -6 + chr7 9083927 9083987 chr7,9083927,9083987,+,L3,LINE,CR1,3143,3201,-898,9080785,9084885 -6 + chr7 9084429 9084470 chr7,9084429,9084470,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,41,0,9084429,9084470 -6 + chr7 9084538 9084548 chr7,9084538,9084659,+,MIRb,SINE,MIR,3,122,-146,9084536,9084805 -2 + chr7 9142616 9142854 chr7,9142355,9142854,-,Tigger5,DNA,TcMar-Tigger,-1,2405,1884,9142354,9144737 +4 - chr7 9142835 9142923 chr7,9142835,9143024,-,Tigger5b,DNA,TcMar-Tigger,-260,212,16,9142575,9143039 +2 - chr7 9189560 9189590 chr7,9189518,9189590,-,HUERS-P3-int,LTR,ERV1,-8831,88,14,9180687,9189603 +4 - chr7 9189604 9189857 chr7,9189604,9190242,-,LTR9,LTR,ERV1,0,612,9,9189604,9190250 +1 - chr7 9961024 9961165 chr7,9961015,9961170,+,MIR3,SINE,MIR,1,170,-38,9961015,9961208 +1 + chr7 9961285 9961389 chr7,9961255,9961389,+,MIRc,SINE,MIR,59,195,-73,9961197,9961462 +2 + chr7 10702676 10702776 chr7,10702068,10703564,+,Tigger3,DNA,TcMar-Tigger,2,1529,-1500,10702067,10705064 +1 + chr7 10707299 10707406 chr7,10707299,10707483,-,OldhAT1,DNA,hAT-Ac,-2379,469,286,10704920,10707768 -5 - chr7 11181732 11181836 chr7,11181721,11182079,-,L2c,LINE,L2,-73,3314,2940,11181648,11185018 -1 - chr7 11188539 11188596 chr7,11188527,11188596,-,MLT1G3,LTR,ERVL-MaLR,-523,72,1,11188004,11188596 -2 - chr7 11192822 11192883 chr7,11192822,11192883,+,L1MA1,LINE,L1,5974,6035,-267,11186849,11193150 +6 + chr7 11192886 11193016 chr7,11192886,11193016,-,L1MA2,LINE,L1,-204,5964,5837,11192682,11198852 -6 - chr7 11193018 11193050 chr7,11193018,11193694,+,MER61-int,LTR,ERV1,1,700,-4517,11193018,11198211 +1 + chr7 11193366 11193422 chr7,11193018,11193694,+,MER61-int,LTR,ERV1,1,700,-4517,11193018,11198211 +1 + chr7 11197307 11197444 chr7,11193735,11197496,+,MER61-int,LTR,ERV1,1322,5217,0,11192414,11197496 +1 + chr7 11227517 11227602 chr7,11227368,11227602,+,MIRb,SINE,MIR,2,236,-32,11227367,11227634 +2 + chr7 11244258 11244336 chr7,11243768,11244336,+,ERVL-E-int,LTR,ERVL,2134,2729,-2938,11241635,11247274 +2 + chr7 11252980 11253207 chr7,11252764,11253207,-,LTR40b,LTR,ERVL,0,462,3,11252764,11253209 -1 - chr7 11322249 11322324 chr7,11322242,11323002,+,L1MDa,LINE,L1,1,703,-5930,11322242,11328932 +5 + chr7 11337693 11337811 chr7,11337618,11338078,-,MLT1D,LTR,ERVL-MaLR,-3,502,65,11337615,11338142 -3 - chr7 11378783 11378838 chr7,11378783,11378838,+,(TTGAA)n,Simple_repeat,Simple_repeat,1,56,0,11378783,11378838 +6 + chr7 11383797 11383813 chr7,11382858,11383813,-,L1ME3Cz,LINE,L1,0,997,7,11382858,11383819 -2 - chr7 11383814 11384268 chr7,11383814,11384268,+,Charlie1a,DNA,hAT-Charlie,1040,1454,-1,11382775,11384269 +5 + chr7 11384268 11385678 chr7,11384268,11385716,-,L1M5,LINE,L1,-879,5267,3712,11383389,11389427 -5 - chr7 11413814 11414078 chr7,11413471,11414133,+,LTR8A,LTR,ERV1,1,727,0,11413471,11414133 +5 + chr7 11520161 11520175 chr7,11520161,11520410,+,MIRb,SINE,MIR,3,268,0,11520159,11520410 +5 + chr7 12496429 12496639 chr7,12496417,12496727,+,L2c,LINE,L2,3042,3353,-34,12493376,12496761 +1 + chr7 12540920 12541109 chr7,12540868,12541109,-,MamGypsy2-I,LTR,Gypsy,-2095,2071,1824,12538773,12542932 -2 - chr7 12541133 12541243 chr7,12541133,12541250,-,MamGypsy2-I,LTR,Gypsy,-3717,449,328,12537416,12541577 -5 - chr7 12654226 12654383 chr7,12654226,12654383,+,MLT1J,LTR,ERVL-MaLR,1,159,-353,12654226,12654736 +6 + chr7 13102008 13102389 chr7,13101974,13103665,+,SVA_D,Retroposon,SVA,50,1363,-23,13101925,13103688 +5 + chr7 13217545 13217668 chr7,13217536,13217689,-,FRAM,SINE,Alu,-23,153,1,13217513,13217689 -3 - chr7 13310209 13310323 chr7,13310207,13310854,+,MER57-int,LTR,ERV1,1,690,-6847,13310207,13317701 +3 + chr7 13340133 13340260 chr7,13340133,13340296,+,AluJr,SINE,Alu,150,310,-2,13339984,13340298 -2 + chr7 13361444 13361562 chr7,13361247,13361710,+,MER4A1,LTR,ERV1,1,471,-1,13361247,13361711 -3 + chr7 13364333 13364540 chr7,13363928,13364540,+,LTR9B,LTR,ERV1,1,644,0,13363928,13364540 -3 + chr7 13365012 13365049 chr7,13364540,13365685,+,L1ME3A,LINE,L1,4751,5951,-222,13359790,13365907 -1 + chr7 13636646 13636732 chr7,13636449,13636813,+,MSTA,LTR,ERVL-MaLR,1,428,0,13636449,13636813 +3 + chr7 13854494 13854622 chr7,13854494,13854667,-,L3,LINE,CR1,-1492,2607,2408,13853002,13857074 +2 - chr7 14814131 14814146 chr7,14814125,14814272,+,MLT1L,LTR,ERVL-MaLR,183,333,-277,14813943,14814549 +1 + chr7 14815164 14815240 chr7,14815154,14815686,-,LTR78B,LTR,ERV1,-420,876,291,14814734,14815976 -3 - chr7 14816533 14816565 chr7,14816533,14816711,+,MIRb,SINE,MIR,20,220,-48,14816514,14816759 +5 + chr7 15066207 15066512 chr7,15066011,15066709,+,LTR37-int,LTR,ERV1,111,793,-3267,15065901,15069976 +1 + chr7 15068305 15068651 chr7,15066736,15068753,+,LTR37-int,LTR,ERV1,1154,3275,-785,15065583,15069538 +5 + chr7 15668111 15668296 chr7,15668111,15668470,+,Tigger2a,DNA,TcMar-Tigger,1,343,-91,15668111,15668561 +4 + chr7 15676037 15676160 chr7,15676037,15676174,+,Tigger12,DNA,TcMar-Tigger,74,219,-2256,15675964,15678430 +4 + chr7 15677463 15677553 chr7,15677449,15677553,+,LTR33,LTR,ERVL,74,178,-337,15677376,15677890 +2 + chr7 15677577 15677647 chr7,15677577,15677819,+,LTR33,LTR,ERVL,237,494,-21,15677341,15677840 +4 + chr7 15679208 15679237 chr7,15679208,15679237,+,(AT)n,Simple_repeat,Simple_repeat,1,29,0,15679208,15679237 +6 + chr7 15680838 15680878 chr7,15680838,15680878,+,(TTATT)n,Simple_repeat,Simple_repeat,1,41,0,15680838,15680878 +6 + chr7 15694887 15695135 chr7,15694887,15695135,-,MamGypsy2-I,LTR,Gypsy,-2152,2014,1730,15692735,15696864 -6 - chr7 15841332 15841427 chr7,15841332,15841460,-,MamRep605,LTR?,LTR?,-236,613,483,15841096,15841942 +2 - chr7 15842215 15842253 chr7,15842215,15842253,+,(TGAA)n,Simple_repeat,Simple_repeat,1,38,0,15842215,15842253 -6 + chr7 16088412 16088717 chr7,16088412,16088717,-,AluY,SINE,Alu,-7,304,1,16088405,16088717 +6 - chr7 16089013 16089110 chr7,16089013,16089110,+,MIRc,SINE,MIR,51,150,-118,16088963,16089228 -6 + chr7 16210488 16210603 chr7,16210300,16210710,+,MLT1F2,LTR,ERVL-MaLR,1,499,-61,16210300,16210771 +1 + chr7 16216428 16216569 chr7,16216428,16222457,+,L1PA2,LINE,L1,125,6155,0,16216304,16222457 +4 + chr7 16235902 16235979 chr7,16235853,16235998,+,MIR,SINE,MIR,128,262,0,16235726,16235998 +3 + chr7 16237309 16237413 chr7,16237237,16237570,-,MLT1A0,LTR,ERVL-MaLR,-8,357,6,16237229,16237575 -5 - chr7 16248058 16248089 chr7,16248058,16248343,+,AluJr,SINE,Alu,1,287,-25,16248058,16248368 +5 + chr7 16261899 16262096 chr7,16261855,16262171,-,HAL1b,LINE,L1,-808,1613,1279,16261047,16263449 -3 - chr7 16471184 16471313 chr7,16470638,16471313,-,MER44C,DNA,TcMar-Tigger,0,733,9,16470638,16471321 -1 - chr7 16593713 16593939 chr7,16593713,16593939,+,MIRb,SINE,MIR,26,268,0,16593688,16593939 -6 + chr7 16593981 16594224 chr7,16593981,16594330,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,16593981,16594330 -1 + chr7 17280112 17280259 chr7,17280112,17280259,-,MER63A,DNA,hAT-Blackjack,-36,174,31,17280076,17280289 +6 - chr7 17281241 17281308 chr7,17281093,17281308,+,L2c,LINE,L2,2959,3167,-208,17278135,17281516 -1 + chr7 17291230 17291371 chr7,17291092,17291402,+,AluSx,SINE,Alu,1,310,-2,17291092,17291404 -3 + chr7 17295166 17295191 chr7,17295083,17295191,+,MIR3,SINE,MIR,31,159,-71,17295053,17295262 -4 + chr7 17295191 17295273 chr7,17295191,17295720,-,MER119,DNA,hAT-Charlie,0,583,1,17295191,17295720 +1 - chr7 17374884 17375055 chr7,17374884,17375084,+,MIRb,SINE,MIR,68,266,-2,17374817,17375086 +4 + chr7 17434948 17434980 chr7,17434817,17434980,+,MamGypsy2-LTR,LTR,Gypsy,5,183,0,17434813,17434980 -4 + chr7 17436041 17436161 chr7,17436041,17436161,-,MLT1J2,LTR,ERVL-MaLR,-49,399,278,17435992,17436438 +6 - chr7 17448881 17448948 chr7,17446247,17450571,-,L1PREC2,LINE,L1,-2211,5930,1,17444036,17450571 -3 - chr7 17457334 17457436 chr7,17457252,17457783,-,MLT1F,LTR,ERVL-MaLR,-7,541,1,17457245,17457783 +1 - chr7 17457459 17457589 chr7,17457252,17457783,-,MLT1F,LTR,ERVL-MaLR,-7,541,1,17457245,17457783 +1 - chr7 17460482 17460496 chr7,17460338,17460496,+,MIRb,SINE,MIR,3,181,-87,17460336,17460583 -4 + chr7 17460496 17460672 chr7,17460496,17461103,-,LTR9B,LTR,ERV1,0,644,7,17460496,17461109 +1 - chr7 17483475 17483534 chr7,17483475,17483796,+,MER44A,DNA,TcMar-Tigger,2,339,0,17483474,17483796 -2 + chr7 17942284 17942857 chr7,17942284,17942857,+,L2a,LINE,L2,2846,3426,0,17939439,17942857 +6 + chr7 18000374 18000502 chr7,18000374,18000502,-,MIR3,SINE,MIR,-40,168,42,18000334,18000543 +6 - chr7 18000678 18000879 chr7,18000678,18000970,-,AluY,SINE,Alu,-18,293,1,18000660,18000970 +1 - chr7 18429062 18429282 chr7,18428665,18429282,+,L2a,LINE,L2,2774,3426,0,18425892,18429282 -5 + chr7 18430479 18430511 chr7,18430232,18430511,-,AluJr,SINE,Alu,-21,291,13,18430211,18430523 +4 - chr7 18430599 18430738 chr7,18430599,18430879,+,AluSz6,SINE,Alu,1,275,-37,18430599,18430916 -1 + chr7 18892117 18892202 chr7,18892117,18892226,+,MIR3,SINE,MIR,20,157,-51,18892098,18892277 -2 + chr7 19113436 19113477 chr7,19113436,19113477,+,A-rich,Low_complexity,Low_complexity,1,41,0,19113436,19113477 +6 + chr7 19113785 19113810 chr7,19113785,19113810,+,(AAAG)n,Simple_repeat,Simple_repeat,1,25,0,19113785,19113810 +6 + chr7 19114084 19114125 chr7,19114084,19114125,+,(AC)n,Simple_repeat,Simple_repeat,1,43,0,19114084,19114125 +6 + chr7 19145108 19145176 chr7,19145108,19145176,+,(CCT)n,Simple_repeat,Simple_repeat,1,69,0,19145108,19145176 +6 + chr7 19353534 19353641 chr7,19353183,19353943,+,Tigger7,DNA,TcMar-Tigger,6,769,-1722,19353178,19355665 +1 + chr7 19354740 19354885 chr7,19354647,19355020,-,MSTA,LTR,ERVL-MaLR,0,428,1,19354647,19355020 -3 - chr7 19816210 19816314 chr7,19816210,19816500,-,L2a,LINE,L2,-562,2857,2576,19815648,19819075 +2 - chr7 19817957 19818090 chr7,19817919,19818295,-,MSTA,LTR,ERVL-MaLR,0,428,1,19817919,19818295 +1 - chr7 19943394 19943488 chr7,19943394,19943524,+,L2c,LINE,L2,3255,3376,-11,19940140,19943535 -2 + chr7 19968137 19968395 chr7,19966603,19968396,+,L2a,LINE,L2,444,2436,-983,19966160,19969379 -1 + chr7 20007211 20007352 chr7,20007211,20007548,-,MLT1J1,LTR,ERVL-MaLR,-72,372,19,20007139,20007566 +2 - chr7 20028919 20028959 chr7,20028733,20029168,-,L1ME3G,LINE,L1,-5017,2086,1625,20023716,20030792 +3 - chr7 20045504 20045561 chr7,20045504,20045838,+,ERV3-16A3_I-int,LTR,ERVL,3184,3531,-1695,20042321,20047533 -2 + chr7 20096137 20096226 chr7,20095825,20096873,+,L1MA7,LINE,L1,480,1540,-4601,20095346,20101474 +1 + chr7 20125080 20125162 chr7,20124844,20125470,+,HERVH-int,LTR,ERV1,4489,5149,-2564,20120356,20128034 -1 + chr7 20128969 20129002 chr7,20128959,20129047,+,A-rich,Low_complexity,Low_complexity,1,89,0,20128959,20129047 +3 + chr7 20130244 20130280 chr7,20130244,20130280,+,(CAA)n,Simple_repeat,Simple_repeat,1,36,0,20130244,20130280 +6 + chr7 20130416 20130475 chr7,20130416,20130711,+,MER47A,DNA,TcMar-Tigger,1,288,-78,20130416,20130789 +5 + chr7 20131678 20131719 chr7,20131451,20131757,-,MER44D,DNA,TcMar-Tigger,0,705,361,20131451,20132117 +1 - chr7 20133924 20134006 chr7,20133730,20134006,-,MLT1K,LTR,ERVL-MaLR,-15,580,326,20133715,20134331 +5 - chr7 20134033 20134154 chr7,20134033,20134154,+,MLT2F,LTR,ERVL,6,120,-543,20134028,20134697 -6 + chr7 20134160 20134255 chr7,20134160,20134288,+,AluJb,SINE,Alu,183,312,0,20133978,20134288 -2 + chr7 20141928 20141968 chr7,20141928,20141968,+,(AC)n,Simple_repeat,Simple_repeat,1,40,0,20141928,20141968 +6 + chr7 20296708 20296759 chr7,20296154,20296865,-,MER44C,DNA,TcMar-Tigger,0,733,1,20296154,20296865 -1 - chr7 20300116 20300226 chr7,20300116,20300289,+,MER5B,DNA,hAT-Charlie,7,178,0,20300110,20300289 +4 + chr7 20301012 20301043 chr7,20300898,20301043,-,MIRb,SINE,MIR,-30,238,106,20300868,20301148 -2 - chr7 20835431 20835446 chr7,20835099,20835446,-,MER61A,LTR,ERV1,0,341,1,20835099,20835446 -1 - chr7 20835447 20835504 chr7,20835447,20835548,+,MIRc,SINE,MIR,19,144,-124,20835429,20835672 +4 + chr7 21022057 21022150 chr7,21022055,21022247,+,MIRc,SINE,MIR,2,203,-5,21022054,21022252 +3 + chr7 22572488 22572932 chr7,22572488,22572932,-,MLT1C,LTR,ERVL-MaLR,-6,461,1,22572482,22572932 -6 - chr7 22572488 22572760 chr7,22572488,22572932,-,MLT1C,LTR,ERVL-MaLR,-6,461,1,22572482,22572932 +2 - chr7 22573303 22573322 chr7,22573303,22573322,+,(ATG)n,Simple_repeat,Simple_repeat,1,19,0,22573303,22573322 +6 + chr7 22573854 22573996 chr7,22573854,22574367,-,Charlie1a,DNA,hAT-Charlie,0,1455,1060,22573854,22575426 -5 - chr7 22591329 22591439 chr7,22591329,22591439,+,L2a,LINE,L2,3303,3424,-2,22588027,22591441 +6 + chr7 22649960 22650060 chr7,22649847,22650060,+,L1ME5,LINE,L1,5786,6003,-191,22644062,22650251 -5 + chr7 22650519 22650900 chr7,22650519,22650900,+,L2a,LINE,L2,2954,3411,-15,22647566,22650915 -6 + chr7 22650933 22651153 chr7,22650933,22651185,-,L2,LINE,L2,-855,2564,2274,22650078,22653458 +2 - chr7 22653053 22653151 chr7,22653053,22653248,-,MIR3,SINE,MIR,-22,186,2,22653031,22653249 +2 - chr7 22653326 22653414 chr7,22653326,22653488,+,MER5A1,DNA,hAT-Charlie,1,165,-1,22653326,22653489 -2 + chr7 22725923 22726198 chr7,22725923,22726198,+,LTR88b,LTR,Gypsy?,5,297,-540,22725919,22726738 -6 + chr7 22857062 22857075 chr7,22857062,22857080,+,(T)n,Simple_repeat,Simple_repeat,1,18,0,22857062,22857080 +5 + chr7 22861208 22861402 chr7,22861208,22861431,+,MER33,DNA,hAT-Charlie,5,225,-99,22861204,22861530 +5 + chr7 23101228 23103420 chr7,23101213,23103420,+,Tigger1,DNA,TcMar-Tigger,1,2182,-236,23101213,23103656 -5 + chr7 23103424 23103578 chr7,23103424,23103606,+,FAM,SINE,Alu,4,184,-1,23103421,23103607 -2 + chr7 23206097 23206300 chr7,23206097,23206300,+,L1M4b,LINE,L1,404,599,-6268,23205694,23212568 +6 + chr7 23891716 23891870 chr7,23891716,23891870,-,MIRb,SINE,MIR,-58,210,41,23891658,23891910 +6 - chr7 23897261 23897280 chr7,23897173,23897280,-,Charlie16a,DNA,hAT-Charlie,-187,155,52,23896986,23897331 +4 - chr7 24196679 24196833 chr7,24196679,24196833,-,L2c,LINE,L2,-4,3383,3230,24196675,24200062 +6 - chr7 24255561 24255584 chr7,24255499,24255584,+,LTR67B,LTR,ERVL,31,119,-501,24255469,24256085 -4 + chr7 24255633 24255658 chr7,24255633,24255658,+,(CTT)n,Simple_repeat,Simple_repeat,1,25,0,24255633,24255658 -6 + chr7 25321305 25321478 chr7,25321305,25321478,-,MIRc,SINE,MIR,-39,229,29,25321266,25321506 +6 - chr7 25358268 25358409 chr7,25358268,25358409,-,MIRc,SINE,MIR,-105,163,20,25358163,25358428 +6 - chr7 25593364 25593539 chr7,25593364,25593539,-,L2b,LINE,L2,-1,3374,3182,25593363,25596720 +6 - chr7 25594020 25594061 chr7,25594020,25594061,+,L2c,LINE,L2,3272,3311,-76,25590749,25594137 -6 + chr7 25594409 25594537 chr7,25594409,25594537,-,Chap1_Mam,DNA,hAT-Charlie,-156,186,56,25594253,25594592 +5 - chr7 25657760 25657816 chr7,25657760,25657816,+,A-rich,Low_complexity,Low_complexity,1,58,0,25657760,25657816 -6 + chr7 25657816 25657845 chr7,25657816,25657845,+,GA-rich,Low_complexity,Low_complexity,6,92,0,25657811,25657845 -6 + chr7 25661670 25661731 chr7,25661595,25661749,+,MIRb,SINE,MIR,2,157,-111,25661594,25661860 -3 + chr7 26173737 26174113 chr7,26173737,26174113,-,L2a,LINE,L2,-1,3425,3005,26173736,26177117 +6 - chr7 26174103 26174267 chr7,26174103,26174267,-,L2a,LINE,L2,-1165,2254,2065,26172938,26176331 +6 - chr7 26174267 26174589 chr7,26174267,26174589,-,L2a,LINE,L2,-1488,1931,1589,26172779,26176177 +6 - chr7 26399411 26399654 chr7,26399411,26399720,+,MER33,DNA,hAT-Charlie,1,323,-1,26399411,26399721 +5 + chr7 26538845 26539038 chr7,26538845,26539038,-,L4_C_Mam,LINE,RTE-X,-225,4913,4720,26538620,26543757 -6 - chr7 26539178 26539596 chr7,26539178,26539596,-,L1ME4a,LINE,L1,-6,6118,5697,26539172,26545292 -6 - chr7 26551822 26551841 chr7,26551639,26551841,-,MIR,SINE,MIR,-5,257,13,26551634,26551853 -1 - chr7 26551934 26551967 chr7,26551934,26551967,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,26551934,26551967 +6 + chr7 27098922 27099002 chr7,27098922,27099002,+,L3,LINE,CR1,2707,2779,-1320,27096216,27100322 +6 + chr7 27099741 27099776 chr7,27099741,27099776,+,(CTTTTT)n,Simple_repeat,Simple_repeat,1,35,0,27099741,27099776 +6 + chr7 27100112 27100153 chr7,27100112,27100153,+,GA-rich,Low_complexity,Low_complexity,1,42,0,27100112,27100153 +5 + chr7 27107832 27107868 chr7,27107832,27107868,+,A-rich,Low_complexity,Low_complexity,1,36,0,27107832,27107868 +6 + chr7 27124235 27124261 chr7,27124235,27124261,+,(CGCT)n,Simple_repeat,Simple_repeat,1,26,0,27124235,27124261 +6 + chr7 27128354 27128381 chr7,27128354,27128381,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,27128354,27128381 +6 + chr7 27129168 27129201 chr7,27129168,27129201,+,GA-rich,Low_complexity,Low_complexity,1,33,0,27129168,27129201 -6 + chr7 27129229 27129285 chr7,27129229,27129285,+,G-rich,Low_complexity,Low_complexity,1,56,0,27129229,27129285 -6 + chr7 27130046 27130085 chr7,27130046,27130085,+,(CCCGAC)n,Simple_repeat,Simple_repeat,1,40,0,27130046,27130085 +6 + chr7 27147195 27147273 chr7,27147195,27147273,+,(TTCT)n,Simple_repeat,Simple_repeat,1,81,0,27147195,27147273 +6 + chr7 27150157 27150178 chr7,27150157,27150178,+,(TC)n,Simple_repeat,Simple_repeat,1,21,0,27150157,27150178 +6 + chr7 27151175 27151205 chr7,27151175,27151205,+,(AAAC)n,Simple_repeat,Simple_repeat,1,32,0,27151175,27151205 +6 + chr7 27152950 27152993 chr7,27152950,27152993,+,(CCCCTG)n,Simple_repeat,Simple_repeat,1,44,0,27152950,27152993 +6 + chr7 27154782 27154825 chr7,27154782,27154825,+,(T)n,Simple_repeat,Simple_repeat,1,43,0,27154782,27154825 +6 + chr7 27154912 27154953 chr7,27154912,27154953,+,(TCC)n,Simple_repeat,Simple_repeat,1,41,0,27154912,27154953 +6 + chr7 27154963 27155016 chr7,27154963,27155016,+,(GCG)n,Simple_repeat,Simple_repeat,1,53,0,27154963,27155016 +6 + chr7 27168831 27168957 chr7,27168831,27168957,+,GA-rich,Low_complexity,Low_complexity,1,135,0,27168831,27168957 +1 + chr7 27169094 27169133 chr7,27169093,27169133,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,27169093,27169133 +1 + chr7 27169593 27169631 chr7,27169593,27169631,+,(CCG)n,Simple_repeat,Simple_repeat,1,38,0,27169593,27169631 +6 + chr7 27171366 27171395 chr7,27171366,27171395,+,(AAGA)n,Simple_repeat,Simple_repeat,1,30,0,27171366,27171395 +5 + chr7 27171688 27171745 chr7,27171688,27171745,+,A-rich,Low_complexity,Low_complexity,1,61,0,27171688,27171745 +6 + chr7 27184518 27184636 chr7,27184481,27184636,+,(CGC)n,Simple_repeat,Simple_repeat,1,152,0,27184481,27184636 +1 + chr7 27186726 27186761 chr7,27186726,27186761,+,(CACAGAG)n,Simple_repeat,Simple_repeat,1,37,0,27186726,27186761 +6 + chr7 27186726 27186761 chr7,27186726,27186761,+,(CACAGAG)n,Simple_repeat,Simple_repeat,1,37,0,27186726,27186761 -6 + chr7 27200883 27200927 chr7,27200883,27200927,+,(CA)n,Simple_repeat,Simple_repeat,1,44,0,27200883,27200927 +6 + chr7 27206521 27206696 chr7,27206521,27206696,-,L1MC5a,LINE,L1,-11,2766,2579,27206510,27209274 -6 - chr7 27242545 27242592 chr7,27242545,27242592,+,(TCTG)n,Simple_repeat,Simple_repeat,1,47,0,27242545,27242592 -6 + chr7 27381101 27381206 chr7,27381101,27381337,-,L3b,LINE,CR1,-154,5078,4863,27380947,27386199 -5 - chr7 27408809 27408958 chr7,27408773,27408976,-,MIRc,SINE,MIR,-1,267,68,27408772,27409043 -3 - chr7 27412164 27412219 chr7,27411914,27412219,+,AluSx1,SINE,Alu,3,311,-1,27411912,27412220 +1 + chr7 27412219 27412718 chr7,27412219,27412718,+,L2a,LINE,L2,2856,3426,0,27409364,27412718 +6 + chr7 27412714 27412773 chr7,27412714,27412773,+,MIRc,SINE,MIR,179,241,-27,27412536,27412800 +6 + chr7 27733536 27733608 chr7,27733536,27733608,-,L2,LINE,L2,-1531,1888,1817,27732005,27735424 +6 - chr7 28185670 28185752 chr7,28185457,28185766,-,AluJb,SINE,Alu,0,312,9,28185457,28185774 -3 - chr7 28217268 28217349 chr7,28217268,28217544,-,MER103C,DNA,hAT-Charlie,-2,295,1,28217266,28217544 -4 - chr7 28240017 28240106 chr7,28240017,28240330,-,L1M6,LINE,L1,-4598,1898,1581,28235419,28241910 -4 - chr7 28240457 28240500 chr7,28240445,28240500,+,LTR81AB,LTR,Gypsy,65,120,-158,28240381,28240658 +2 + chr7 28240655 28240810 chr7,28240655,28240810,+,L2a,LINE,L2,3063,3220,-206,28237593,28241016 +5 + chr7 28240845 28241081 chr7,28240845,28241081,-,L1M6,LINE,L1,-5789,707,425,28235056,28241505 -6 - chr7 28241098 28241220 chr7,28241098,28241220,+,L2a,LINE,L2,3293,3386,-40,28237806,28241260 +6 + chr7 28241480 28241614 chr7,28241480,28241614,-,L1M6,LINE,L1,-6340,156,5,28235140,28241618 -6 - chr7 28242197 28242261 chr7,28242197,28242261,+,UCON5,Unknown,Unknown,324,387,-49,28241874,28242310 +6 + chr7 28242579 28242879 chr7,28242579,28242879,-,AluSx,SINE,Alu,-12,300,1,28242567,28242879 -6 - chr7 28243553 28243917 chr7,28243553,28243958,+,MLT1B,LTR,ERVL-MaLR,1,389,-1,28243553,28243959 +5 + chr7 28980059 28980098 chr7,28980059,28980228,+,LTR33A_,LTR,ERVL,354,531,0,28979706,28980228 +4 + chr7 28988871 28988899 chr7,28988871,28988905,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,28988871,28988905 +5 + chr7 29009187 29009208 chr7,29009187,29009208,+,(A)n,Simple_repeat,Simple_repeat,1,21,0,29009187,29009208 +6 + chr7 29009292 29009419 chr7,29009292,29009419,+,L1M5,LINE,L1,5467,5602,-571,29003826,29009990 +6 + chr7 29009425 29009791 chr7,29009425,29009791,+,L1ME3E,LINE,L1,5673,6050,-192,29003753,29009983 +6 + chr7 29009802 29009918 chr7,29009802,29009918,+,L1ME3E,LINE,L1,6109,6231,-11,29003694,29009929 +6 + chr7 29010265 29010293 chr7,29010265,29010293,+,(TTTTG)n,Simple_repeat,Simple_repeat,1,29,0,29010265,29010293 +6 + chr7 29010754 29011019 chr7,29010754,29011019,-,MIR,SINE,MIR,0,262,1,29010754,29011019 -6 - chr7 29011194 29011288 chr7,29011194,29011288,-,Charlie4a,DNA,hAT-Charlie,0,508,417,29011194,29011704 -6 - chr7 29011291 29011582 chr7,29011291,29011582,+,AluJo,SINE,Alu,1,290,-22,29011291,29011604 +6 + chr7 29011670 29012100 chr7,29011670,29012100,-,Charlie4a,DNA,hAT-Charlie,-105,403,2,29011565,29012101 -6 - chr7 29012814 29012905 chr7,29012814,29012905,+,MER5B,DNA,hAT-Charlie,5,100,-78,29012810,29012983 +6 + chr7 29012969 29013367 chr7,29012969,29013409,+,MLT1H2,LTR,ERVL-MaLR,7,545,-4,29012963,29013413 +5 + chr7 29080284 29080328 chr7,29080277,29080577,+,AluSg,SINE,Alu,1,300,-10,29080277,29080587 +1 + chr7 29082322 29082450 chr7,29082280,29082450,-,MIR3,SINE,MIR,-37,171,9,29082243,29082458 -2 - chr7 29208844 29208970 chr7,29208844,29209231,-,MLT1L,LTR,ERVL-MaLR,-166,444,43,29208678,29209273 +1 - chr7 29514619 29514704 chr7,29514619,29514704,+,MIRb,SINE,MIR,27,107,-161,29514593,29514865 -6 + chr7 29563388 29563450 chr7,29563237,29563450,+,MIR,SINE,MIR,12,227,-35,29563226,29563485 -4 + chr7 29988630 29988673 chr7,29988630,29988673,+,(AC)n,Simple_repeat,Simple_repeat,1,44,0,29988630,29988673 +6 + chr7 30025387 30025483 chr7,30025167,30025483,+,L2c,LINE,L2,3047,3382,-5,30022121,30025488 +2 + chr7 30025520 30025600 chr7,30025520,30025600,+,L2b,LINE,L2,3308,3426,0,30022213,30025600 +5 + chr7 30069732 30069806 chr7,30069732,30069862,+,MIR3,SINE,MIR,60,193,-15,30069673,30069877 -2 + chr7 30140990 30141076 chr7,30140990,30141076,+,MIRb,SINE,MIR,65,151,-117,30140926,30141193 +6 + chr7 30141138 30141201 chr7,30141138,30141443,+,AluSx1,SINE,Alu,7,311,-1,30141132,30141444 +5 + chr7 30141313 30141417 chr7,30141138,30141443,+,AluSx1,SINE,Alu,7,311,-1,30141132,30141444 +5 + chr7 30176388 30176845 chr7,30176388,30176845,-,MLT1F2,LTR,ERVL-MaLR,-54,506,42,30176334,30176886 +6 - chr7 30516405 30516512 chr7,30516405,30516721,+,AluJr,SINE,Alu,1,312,0,30516405,30516721 -2 + chr7 30517218 30517498 chr7,30517218,30517517,+,AluY,SINE,Alu,1,299,-12,30517218,30517529 -2 + chr7 30523975 30524256 chr7,30523957,30524256,-,AluY,SINE,Alu,-13,298,1,30523944,30524256 +5 - chr7 30524256 30524279 chr7,30524256,30524279,-,MIR,SINE,MIR,-222,40,12,30524034,30524290 +6 - chr7 30532667 30532729 chr7,30532645,30532730,-,MIRc,SINE,MIR,-116,152,64,30532529,30532793 -3 - chr7 30533486 30533613 chr7,30533486,30533640,+,MER89,LTR,ERV1,407,559,0,30533080,30533640 +5 + chr7 30547166 30547250 chr7,30547155,30547250,+,THE1B,LTR,ERVL-MaLR,271,364,0,30546885,30547250 -5 + chr7 30548762 30548906 chr7,30548762,30548906,-,LTR88b,LTR,Gypsy?,-8,829,670,30548754,30549575 +6 - chr7 30549073 30549099 chr7,30549073,30549099,+,(GTTTT)n,Simple_repeat,Simple_repeat,1,26,0,30549073,30549099 -6 + chr7 30549309 30549527 chr7,30549309,30549527,+,MIRb,SINE,MIR,34,267,-1,30549276,30549528 -6 + chr7 30549557 30549671 chr7,30549557,30549671,+,L1ME4a,LINE,L1,5994,6121,-3,30543564,30549674 -6 + chr7 30550217 30550344 chr7,30550034,30550382,+,THE1B,LTR,ERVL-MaLR,1,364,0,30550034,30550382 +5 + chr7 30550034 30550382 chr7,30550034,30550382,+,THE1B,LTR,ERVL-MaLR,1,364,0,30550034,30550382 -5 + chr7 30551562 30551695 chr7,30551562,30551695,+,L1M7,LINE,L1,617,746,-5565,30550946,30557260 -5 + chr7 30551695 30551996 chr7,30551695,30551996,+,AluSc,SINE,Alu,1,300,-9,30551695,30552005 -6 + chr7 30551996 30552278 chr7,30551996,30552278,+,L1M7,LINE,L1,747,1064,-5247,30551250,30557525 -1 + chr7 30552288 30552333 chr7,30552288,30552333,-,MLT2D,LTR,ERVL,-3,564,520,30552285,30552852 +6 - chr7 30552379 30552400 chr7,30552379,30552400,+,(TG)n,Simple_repeat,Simple_repeat,1,21,0,30552379,30552400 -6 + chr7 30552400 30552806 chr7,30552400,30552806,-,MLT2D,LTR,ERVL,-40,515,4,30552360,30552809 +6 - chr7 30552809 30553293 chr7,30552809,30553293,+,HERVL40-int,LTR,ERVL,5001,5489,-41,30547809,30553334 -6 + chr7 30553341 30553784 chr7,30553341,30553784,+,LTR40c,LTR,ERVL,8,461,-4,30553334,30553788 -6 + chr7 30554206 30554888 chr7,30554206,30554888,+,LTR41C,LTR,ERVL,1,627,-131,30554206,30555019 -6 + chr7 30554889 30555118 chr7,30554889,30555118,-,AluSx,SINE,Alu,-2,310,82,30554887,30555199 +6 - chr7 30555126 30555283 chr7,30555126,30555283,-,L1MB4,LINE,L1,0,6180,6024,30555126,30561306 +6 - chr7 30555283 30555638 chr7,30555283,30555638,-,THE1D,LTR,ERVL-MaLR,0,381,1,30555283,30555638 +6 - chr7 30555638 30555890 chr7,30555638,30555890,-,L1MB4,LINE,L1,-157,6023,5753,30555481,30561642 +6 - chr7 30555891 30556005 chr7,30555891,30556005,+,LTR41C,LTR,ERVL,554,685,-16,30555338,30556021 -6 + chr7 30556593 30557006 chr7,30556593,30557006,+,L2b,LINE,L2,2912,3375,0,30553682,30557006 -6 + chr7 30557393 30557589 chr7,30557393,30557589,+,MER58A,DNA,hAT-Charlie,20,219,-5,30557374,30557594 -6 + chr7 30557631 30557787 chr7,30557631,30557787,+,L1M7,LINE,L1,1873,2025,-4190,30555759,30561977 -6 + chr7 30557787 30558046 chr7,30557787,30558046,+,AluJo,SINE,Alu,41,292,-20,30557747,30558066 -6 + chr7 30558046 30558305 chr7,30558046,30558305,+,L1M7,LINE,L1,2026,2271,-3944,30556021,30562249 -5 + chr7 30558330 30559078 chr7,30558330,30559078,+,L2a,LINE,L2,1924,2628,-791,30556407,30559869 -6 + chr7 30559078 30559367 chr7,30559078,30559367,+,AluJb,SINE,Alu,1,291,-21,30559078,30559388 -6 + chr7 30559367 30559971 chr7,30559367,30559971,+,L2a,LINE,L2,2629,3278,-148,30556739,30560119 -6 + chr7 30559971 30560273 chr7,30559971,30560273,-,AluSc8,SINE,Alu,-9,302,1,30559962,30560273 +6 - chr7 30560281 30560556 chr7,30560281,30560556,-,AluSx3,SINE,Alu,-25,286,1,30560256,30560556 +6 - chr7 30560556 30560702 chr7,30560556,30560702,+,L2a,LINE,L2,3282,3426,0,30557275,30560702 -6 + chr7 30560737 30560922 chr7,30560737,30560922,+,MER99,DNA,hAT?,2,215,-616,30560736,30561538 -6 + chr7 30560922 30561212 chr7,30560922,30561212,+,AluSx,SINE,Alu,12,297,-15,30560911,30561227 -6 + chr7 30561212 30561820 chr7,30561212,30561820,+,MER99,DNA,hAT?,216,830,-1,30560997,30561821 -1 + chr7 30562742 30562825 chr7,30562659,30563014,-,THE1D,LTR,ERVL-MaLR,0,381,26,30562659,30563039 +1 - chr7 30563723 30564076 chr7,30563654,30564076,-,MLT1C,LTR,ERVL-MaLR,0,467,1,30563654,30564076 +1 - chr7 30564609 30564757 chr7,30564609,30564757,-,MIR3,SINE,MIR,-2,206,54,30564607,30564810 +1 - chr7 30566404 30566688 chr7,30566378,30566688,-,AluSx1,SINE,Alu,-5,307,1,30566373,30566688 +5 - chr7 30566688 30566930 chr7,30566688,30566930,-,PABL_B,LTR,ERV1,-430,237,1,30566258,30566930 +6 - chr7 30567032 30567099 chr7,30567032,30567099,+,L2,LINE,L2,448,514,-2905,30566585,30570004 -6 + chr7 30567202 30567464 chr7,30567202,30567464,+,L2,LINE,L2,689,947,-2472,30566514,30569936 -6 + chr7 30567464 30567693 chr7,30567464,30567693,+,Tigger4a,DNA,TcMar-Tigger,2,234,-2,30567463,30567695 -6 + chr7 30567693 30567752 chr7,30567693,30567752,+,L2,LINE,L2,948,1004,-2415,30566746,30570167 -6 + chr7 30567784 30568319 chr7,30567784,30568319,+,MER4A1_,LTR,ERV1,1,600,0,30567784,30568319 -6 + chr7 30568321 30568994 chr7,30568321,30569340,+,MER4-int,LTR,ERV1,1,1110,-5488,30568321,30574828 -5 + chr7 30573000 30573782 chr7,30572870,30573848,-,LOR1-int,LTR,ERV1,-415,8021,6205,30572455,30580052 +1 - chr7 30574613 30574881 chr7,30574613,30575183,-,LOR1-int,LTR,ERV1,-323,6216,5639,30574290,30580821 +5 - chr7 30576564 30576742 chr7,30576480,30576831,-,THE1B,LTR,ERVL-MaLR,0,364,1,30576480,30576831 +1 - chr7 30577512 30578091 chr7,30576831,30578376,-,LOR1-int,LTR,ERV1,-6449,1671,455,30570382,30578830 +5 - chr7 30579006 30579128 chr7,30578715,30579253,-,LOR1-int,LTR,ERV1,-7288,528,1,30571427,30579253 +3 - chr7 30579231 30579253 chr7,30578715,30579253,-,LOR1-int,LTR,ERV1,-7288,528,1,30571427,30579253 +4 - chr7 30579253 30579314 chr7,30579253,30579722,-,MER51A,LTR,ERV1,0,634,1,30579253,30579722 +2 - chr7 30584423 30584453 chr7,30584287,30584961,+,MER4A1_,LTR,ERV1,1,598,-2,30584287,30584963 -3 + chr7 30584711 30584808 chr7,30584287,30584961,+,MER4A1_,LTR,ERV1,1,598,-2,30584287,30584963 -3 + chr7 30585330 30585502 chr7,30585198,30585502,+,AluSx,SINE,Alu,1,302,-10,30585198,30585512 -4 + chr7 30585502 30585684 chr7,30585502,30585684,+,LTR107_Mam,LTR,LTR,249,508,-62,30585254,30585746 -6 + chr7 30585835 30585972 chr7,30585835,30586197,-,MLT1A,LTR,ERVL-MaLR,-4,370,1,30585831,30586197 +1 - chr7 30803084 30803282 chr7,30803084,30803282,+,L2b,LINE,L2,3103,3313,-62,30799982,30803344 -6 + chr7 31414799 31414882 chr7,31414799,31414990,-,MIR3,SINE,MIR,-3,205,10,31414796,31414999 +2 - chr7 31415371 31415464 chr7,31415233,31415464,+,MIR,SINE,MIR,13,259,-3,31415221,31415467 -4 + chr7 31421249 31421286 chr7,31421105,31421326,-,MIR,SINE,MIR,-13,249,1,31421092,31421326 +1 - chr7 32758882 32758930 chr7,32758634,32758930,+,AluSz6,SINE,Alu,2,298,-14,32758633,32758944 +1 + chr7 33728171 33728328 chr7,33728171,33728328,+,MIRb,SINE,MIR,3,179,-89,33728169,33728417 +6 + chr7 33728373 33728403 chr7,33728373,33728403,+,(TTCCC)n,Simple_repeat,Simple_repeat,1,31,0,33728373,33728403 +6 + chr7 33730292 33730409 chr7,33730014,33730409,+,MLT1B,LTR,ERVL-MaLR,4,390,0,33730011,33730409 -5 + chr7 33730565 33730618 chr7,33730565,33730868,+,MER1B,DNA,hAT-Charlie,1,298,-41,33730565,33730909 -2 + chr7 33731815 33731911 chr7,33731675,33731911,+,L2c,LINE,L2,3031,3291,-84,33728645,33731995 -4 + chr7 33793168 33793362 chr7,33793142,33793362,-,MIR,SINE,MIR,-19,243,13,33793123,33793374 +5 - chr7 33793444 33793649 chr7,33793444,33793649,+,MIRc,SINE,MIR,41,264,-4,33793404,33793653 -6 + chr7 33793685 33793842 chr7,33793685,33793842,+,MER3,DNA,hAT-Charlie,48,209,0,33793638,33793842 -6 + chr7 33793853 33793914 chr7,33793853,33793914,-,Plat_L3,LINE,CR1,-21,3565,3500,33793832,33797413 +6 - chr7 33793920 33793996 chr7,33793920,33793996,-,MIR3,SINE,MIR,-95,113,35,33793825,33794030 +6 - chr7 33794106 33794240 chr7,33794106,33794240,+,FLAM_A,SINE,Alu,4,136,-6,33794103,33794246 -6 + chr7 33795864 33796102 chr7,33795864,33796102,-,MLT1L,LTR,ERVL-MaLR,0,610,364,33795864,33796465 +6 - chr7 33796702 33796809 chr7,33796164,33797034,+,MER63C,DNA,hAT-Blackjack,1,929,-1,33796164,33797035 -3 + chr7 33868519 33868639 chr7,33868519,33868884,-,L2a,LINE,L2,0,3426,3051,33868519,33871934 +2 - chr7 34255927 34256266 chr7,34255735,34256266,+,MLT1E3,LTR,ERVL-MaLR,3,553,-71,34255733,34256337 +2 + chr7 34256318 34256343 chr7,34256318,34256396,+,L2a,LINE,L2,2312,2392,-1027,34254007,34257423 +5 + chr7 34346512 34346620 chr7,34346361,34346620,+,L1MC,LINE,L1,3687,3954,-2192,34342675,34348812 -5 + chr7 34346746 34346916 chr7,34346746,34346916,+,MLT1F,LTR,ERVL-MaLR,1,171,-389,34346746,34347305 -6 + chr7 34347149 34347256 chr7,34347149,34347256,+,L1M2,LINE,L1,4749,4856,-1290,34342401,34348546 -6 + chr7 34347320 34347746 chr7,34347320,34347746,+,L1M2,LINE,L1,4877,5309,-837,34342444,34348583 -6 + chr7 34347750 34347851 chr7,34347750,34347851,+,L1M2,LINE,L1,5277,5379,-864,34342474,34348715 -6 + chr7 34348010 34348789 chr7,34348010,34348789,-,L1ME3A,LINE,L1,-10,6163,5335,34348000,34354123 +6 - chr7 34348789 34349368 chr7,34348789,34349368,+,MER6A,DNA,TcMar-Tigger,1,604,-1,34348789,34349369 -6 + chr7 34349368 34349544 chr7,34349368,34349544,-,L1ME3A,LINE,L1,-812,5334,5157,34348556,34354700 +6 - chr7 34349544 34349831 chr7,34349544,34349831,-,AluJo,SINE,Alu,-14,298,11,34349530,34349841 +6 - chr7 34349831 34349954 chr7,34349831,34349954,-,L1ME3A,LINE,L1,-990,5156,5036,34348841,34354989 +6 - chr7 34350019 34350137 chr7,34350019,34350137,-,MER3,DNA,hAT-Charlie,-55,154,6,34349964,34350142 +6 - chr7 34350646 34350773 chr7,34350646,34350773,+,L1MC4a,LINE,L1,6780,6906,-1136,34343867,34351909 -6 + chr7 34417579 34417656 chr7,34417427,34417656,-,MLT1E1A,LTR,ERVL-MaLR,-23,657,434,34417404,34418089 +4 - chr7 34569758 34569861 chr7,34569758,34569901,-,MLT1H,LTR,ERVL-MaLR,-227,322,171,34569531,34570071 +2 - chr7 34643227 34643240 chr7,34642899,34643240,+,LTR84b,LTR,ERVL,311,660,-101,34642589,34643341 -5 + chr7 34704162 34704199 chr7,34704162,34704557,-,L1M6,LINE,L1,-3027,3373,2937,34701135,34707493 +2 - chr7 34718862 34719039 chr7,34718853,34719039,-,MIRb,SINE,MIR,-50,218,23,34718803,34719061 +5 - chr7 34719744 34719808 chr7,34719744,34719999,+,L1M6,LINE,L1,2,250,-6246,34719743,34726245 -2 + chr7 34728737 34728816 chr7,34728671,34729351,+,LTR84b,LTR,ERVL,1,744,-17,34728671,34729368 -3 + chr7 34758074 34758230 chr7,34757969,34758230,+,MIR,SINE,MIR,2,261,-1,34757968,34758231 -4 + chr7 34761129 34761191 chr7,34761129,34761502,-,ERV3-16A3_LTR,LTR,ERVL,-13,409,1,34761116,34761502 +1 - chr7 34768342 34768440 chr7,34768139,34768593,+,L1MCc,LINE,L1,2171,2629,-4408,34765969,34773001 -3 + chr7 34834161 34834241 chr7,34834077,34834241,+,MIR3,SINE,MIR,29,197,-11,34834049,34834252 -4 + chr7 34871499 34871582 chr7,34871441,34872522,-,MSTB-int,LTR,ERVL-MaLR,0,1651,513,34871441,34873034 +1 - chr7 35259691 35259729 chr7,35259691,35259883,-,L2a,LINE,L2,-1,3425,3223,35259690,35263105 +1 - chr7 35695573 35695768 chr7,35695573,35695768,+,MIRb,SINE,MIR,21,231,-37,35695553,35695805 +6 + chr7 35696138 35696264 chr7,35696138,35696264,+,HERV17-int,LTR,ERV1,8498,8626,0,35687641,35696264 +6 + chr7 35696264 35697017 chr7,35696264,35697017,+,LTR17,LTR,ERV1,1,780,0,35696264,35697017 +6 + chr7 35697452 35697638 chr7,35697452,35697638,+,MLT1L,LTR,ERVL-MaLR,356,558,-52,35697097,35697690 +6 + chr7 35697900 35698207 chr7,35697900,35698207,+,AluJb,SINE,Alu,1,309,-3,35697900,35698210 +6 + chr7 35698632 35698925 chr7,35698632,35698925,+,AluSx,SINE,Alu,2,293,-19,35698631,35698944 +6 + chr7 35698957 35699015 chr7,35698957,35699015,+,(TAA)n,Simple_repeat,Simple_repeat,1,61,0,35698957,35699015 +6 + chr7 35699025 35699280 chr7,35699025,35699280,+,L1PB1,LINE,L1,5883,6150,-1,35693143,35699281 +6 + chr7 35719560 35719693 chr7,35719560,35719693,+,L1MD2,LINE,L1,6218,6351,-8,35713343,35719701 +6 + chr7 35722723 35722850 chr7,35722644,35723037,-,MLT1B,LTR,ERVL-MaLR,-1,389,3,35722643,35723039 -3 - chr7 35732597 35732807 chr7,35732597,35732807,-,LTR33B,LTR,ERVL,-26,477,270,35732571,35733076 -6 - chr7 35732819 35732847 chr7,35732819,35733193,-,Arthur1,DNA,hAT-Tip100,-3502,445,28,35729317,35733220 -4 - chr7 35734386 35734605 chr7,35734386,35734605,+,MIRb,SINE,MIR,6,220,-48,35734381,35734653 +5 + chr7 35751883 35752181 chr7,35751883,35752181,-,L1MA4,LINE,L1,0,6300,5995,35751883,35758175 +6 - chr7 35752293 35752339 chr7,35752293,35752339,+,(TC)n,Simple_repeat,Simple_repeat,1,46,0,35752293,35752339 -6 + chr7 35752975 35753097 chr7,35752975,35753097,+,MIR,SINE,MIR,114,242,-26,35752862,35753123 -6 + chr7 35753229 35753534 chr7,35753229,35753534,+,LTR16C,LTR,ERVL,165,489,0,35753065,35753534 -6 + chr7 35755768 35755817 chr7,35755768,35755923,-,MIR,SINE,MIR,-50,212,65,35755718,35755987 +2 - chr7 35758179 35758248 chr7,35758069,35758248,-,MIRc,SINE,MIR,-8,260,8,35758061,35758255 +4 - chr7 35763764 35763898 chr7,35763535,35763898,-,L1ME3Cz,LINE,L1,-147,850,584,35763388,35764481 +5 - chr7 35793981 35794022 chr7,35793981,35794299,-,MER2,DNA,TcMar-Tigger,-1,344,8,35793980,35794306 +2 - chr7 36029800 36029813 chr7,36029800,36029864,-,MLT1O,LTR,ERVL-MaLR,-16,579,516,36029784,36030379 -4 - chr7 36030554 36030672 chr7,36030536,36030821,-,AluJr,SINE,Alu,-17,295,1,36030519,36030821 -3 - chr7 36035852 36035938 chr7,36035714,36035938,+,L2b,LINE,L2,3121,3361,-14,36032594,36035952 +2 + chr7 36085056 36085175 chr7,36085056,36085175,-,MER5A1,DNA,hAT-Charlie,-21,145,27,36085035,36085201 -6 - chr7 36085634 36085728 chr7,36085634,36085728,+,L2c,LINE,L2,3299,3386,-1,36082336,36085729 +6 + chr7 36095431 36095498 chr7,36095431,36095870,+,LTR85a,LTR,Gypsy?,2,427,-275,36095430,36096145 +4 + chr7 36098988 36100408 chr7,36098605,36100408,+,L1MD2,LINE,L1,26,2313,-664,36098580,36101072 +5 + chr7 36100441 36100646 chr7,36100441,36100646,+,L1ME1,LINE,L1,5927,6136,-1649,36094515,36102295 +6 + chr7 36320189 36320479 chr7,36320189,36320531,+,THE1B,LTR,ERVL-MaLR,3,364,0,36320187,36320531 +5 + chr7 36463023 36463128 chr7,36462385,36463677,-,L1MDa,LINE,L1,-5157,1476,35,36457228,36463711 -1 - chr7 36469174 36469266 chr7,36468888,36469341,+,L4_A_Mam,LINE,RTE-X,4465,4941,-49,36464424,36469390 +3 + chr7 36504328 36504513 chr7,36504207,36505045,-,LTR12,LTR,ERV1,0,826,1,36504207,36505045 -5 - chr7 36734229 36734276 chr7,36734229,36734276,+,GA-rich,Low_complexity,Low_complexity,1,48,0,36734229,36734276 -6 + chr7 36782064 36782478 chr7,36781598,36782478,-,L1MEa,LINE,L1,-5122,948,4,36776476,36782481 -2 - chr7 36839079 36839133 chr7,36839079,36839158,+,MamRTE1,LINE,RTE-BovB,224,301,-3511,36838856,36842669 +4 + chr7 38326189 38326519 chr7,38326189,38326519,-,L1MA9,LINE,L1,-1,6311,5990,38326188,38332508 +6 - chr7 38326524 38326618 chr7,38326524,38326618,+,Charlie7,DNA,hAT-Charlie,2467,2560,-52,38324058,38326670 -6 + chr7 38327390 38327589 chr7,38327390,38327589,-,MER5A,DNA,hAT-Charlie,0,189,2,38327390,38327590 +6 - chr7 38329240 38329447 chr7,38328986,38329447,-,HERV16-int,LTR,ERVL,-3828,1398,946,38325158,38330392 +4 - chr7 39013457 39013551 chr7,39007527,39013552,-,L1PA2,LINE,L1,-2,6153,126,39007525,39013677 +1 - chr7 39404598 39404706 chr7,39404562,39404706,-,Tigger14a,DNA,TcMar-Tigger,-138,186,43,39404424,39404748 +5 - chr7 39545648 39545689 chr7,39545648,39545689,+,A-rich,Low_complexity,Low_complexity,1,41,0,39545648,39545689 -6 + chr7 39609813 39609853 chr7,39609813,39609853,+,G-rich,Low_complexity,Low_complexity,1,40,0,39609813,39609853 -6 + chr7 39700341 39700741 chr7,39700154,39700741,-,MLT1G1,LTR,ERVL-MaLR,-1,578,5,39700153,39700745 +5 - chr7 39702980 39703118 chr7,39702564,39703118,+,L1MA5A,LINE,L1,5696,6274,-23,39696869,39703141 -4 + chr7 39733825 39733873 chr7,39733825,39733873,+,MIRc,SINE,MIR,109,154,-54,39733717,39733927 +6 + chr7 39733896 39734044 chr7,39733896,39734333,+,LTR24,LTR,ERV1,10,467,0,39733887,39734333 +4 + chr7 39779271 39779385 chr7,39779257,39779542,-,AluJr,SINE,Alu,-18,294,5,39779239,39779546 -3 - chr7 39780503 39780624 chr7,39780479,39780787,-,AluJb,SINE,Alu,-10,302,1,39780469,39780787 -3 - chr7 39781235 39781351 chr7,39781212,39781499,-,AluJb,SINE,Alu,-16,296,11,39781196,39781509 -3 - chr7 39781865 39781896 chr7,39781865,39782297,+,MER1A,DNA,hAT-Charlie,56,490,-39,39781810,39782336 +4 + chr7 39788482 39788604 chr7,39788455,39788723,-,AluJr,SINE,Alu,-4,308,40,39788451,39788762 -3 - chr7 39789354 39789509 chr7,39789320,39789509,-,AluJb,SINE,Alu,-4,308,121,39789316,39789629 -5 - chr7 39789511 39789544 chr7,39789511,39789617,+,MER8,DNA,TcMar-Tigger,135,239,0,39789377,39789617 +4 + chr7 39791594 39791651 chr7,39791314,39791732,+,MER1A,DNA,hAT-Charlie,1,439,-90,39791314,39791822 +3 + chr7 39948456 39948610 chr7,39948456,39948610,-,AluJo,SINE,Alu,-16,296,147,39948440,39948756 +6 - chr7 39949004 39949095 chr7,39949004,39949095,+,AluSp,SINE,Alu,213,303,-10,39948792,39949105 -6 + chr7 40538395 40538680 chr7,40538395,40538680,+,LTR90A,LTR,LTR,23,332,-644,40538373,40539324 -6 + chr7 40538795 40539096 chr7,40538795,40539096,+,AluY,SINE,Alu,1,299,-12,40538795,40539108 -6 + chr7 40539355 40539606 chr7,40539355,40539606,-,L4_A_Mam,LINE,RTE-X,-89,4901,4643,40539266,40544248 +6 - chr7 40546714 40546764 chr7,40546608,40546764,-,MIR3,SINE,MIR,0,208,35,40546608,40546798 +4 - chr7 40775558 40775582 chr7,40775453,40775582,-,MIRb,SINE,MIR,-8,260,120,40775445,40775701 -1 - chr7 40964993 40965433 chr7,40964993,40965433,+,L4_B_Mam,LINE,RTE-X,4374,5071,-67,40960620,40965500 -6 + chr7 40966523 40966667 chr7,40966523,40966667,-,L3,LINE,CR1,-3332,767,624,40963191,40967290 +6 - chr7 40979856 40979939 chr7,40979856,40979940,+,MIR,SINE,MIR,3,87,-175,40979854,40980115 -1 + chr7 41118967 41119283 chr7,41118959,41119319,-,THE1C,LTR,ERVL-MaLR,-51,377,1,41118908,41119319 -3 - chr7 41133224 41133322 chr7,41133164,41133322,+,MER5A,DNA,hAT-Charlie,34,189,0,41133131,41133322 +2 + chr7 41667168 41667228 chr7,41667104,41667228,-,MIRb,SINE,MIR,-126,142,19,41666978,41667246 +5 - chr7 41710641 41710740 chr7,41710641,41710740,+,MIR1_Amn,SINE,MIR,34,140,-90,41710608,41710830 +6 + chr7 41710892 41710940 chr7,41710892,41710940,+,(AC)n,Simple_repeat,Simple_repeat,1,49,0,41710892,41710940 +6 + chr7 41712152 41712462 chr7,41712152,41712462,-,L1ME4a,LINE,L1,-194,5930,5605,41711958,41718066 -6 - chr7 41712462 41712761 chr7,41712462,41712761,+,AluSz,SINE,Alu,2,300,-12,41712461,41712773 +5 + chr7 41712761 41713064 chr7,41712761,41713064,-,L1ME4a,LINE,L1,-520,5604,5313,41712241,41718376 -6 - chr7 41713080 41713158 chr7,41713080,41713158,+,(TATTA)n,Simple_repeat,Simple_repeat,1,79,0,41713080,41713158 +6 + chr7 41772931 41772973 chr7,41772931,41772973,-,X7B_LINE,LINE,CR1,-123,127,87,41772808,41773059 -6 - chr7 41776841 41777219 chr7,41776832,41777219,-,MLT1I,LTR,ERVL-MaLR,-4,407,1,41776828,41777219 -2 - chr7 41778369 41778476 chr7,41778369,41778476,+,MER5B,DNA,hAT-Charlie,1,109,-69,41778369,41778545 +6 + chr7 41778990 41779147 chr7,41778990,41779147,-,Charlie8,DNA,hAT-Charlie,-132,209,40,41778858,41779186 -6 - chr7 42661726 42662492 chr7,42661689,42662499,+,L1ME1,LINE,L1,5368,6332,-2,42656322,42662501 -5 + chr7 42672785 42672917 chr7,42672725,42672917,-,MIRb,SINE,MIR,-20,248,27,42672705,42672943 +4 - chr7 42672945 42672971 chr7,42672945,42672979,+,MIR3,SINE,MIR,108,141,-67,42672838,42673046 -2 + chr7 42706258 42706335 chr7,42706258,42706335,-,MER61A,LTR,ERV1,0,341,269,42706258,42706603 +6 - chr7 42706335 42706447 chr7,42706335,42706653,+,AluYb8,SINE,Alu,1,318,0,42706335,42706653 -1 + chr7 42829984 42830090 chr7,42829984,42830111,+,L2a,LINE,L2,3290,3426,0,42826695,42830111 -2 + chr7 42901272 42901784 chr7,42900312,42901784,+,L1MC5a,LINE,L1,77,1643,-1134,42900236,42902918 -5 + chr7 42901784 42901989 chr7,42901784,42901989,+,L1MD1,LINE,L1,6026,6234,-8,42895759,42901997 -6 + chr7 42901989 42902639 chr7,42901989,42903106,+,L1MC5a,LINE,L1,1644,2749,-28,42900346,42903134 -1 + chr7 42954135 42954485 chr7,42954067,42954621,-,LTR38B,LTR,ERV1,0,611,49,42954067,42954669 +5 - chr7 42955377 42955457 chr7,42955174,42957121,-,HERV35I-int,LTR,ERV1,-439,6479,4626,42954735,42961746 +5 - chr7 42955955 42956132 chr7,42955174,42957121,-,HERV35I-int,LTR,ERV1,-439,6479,4626,42954735,42961746 +5 - chr7 42959929 42959990 chr7,42958607,42960135,-,HERV35I-int,LTR,ERV1,-2879,4039,2198,42955728,42962332 +3 - chr7 42961339 42961528 chr7,42961078,42961611,-,LTR36,LTR,ERV1,0,611,63,42961078,42961673 +3 - chr7 42962968 42963343 chr7,42962823,42963429,+,LTR24C,LTR,ERV1,1,635,0,42962823,42963429 -1 + chr7 42972624 42972848 chr7,42972475,42972898,-,MLT1J2,LTR,ERVL-MaLR,-2,446,3,42972473,42972900 +5 - chr7 43028338 43028395 chr7,43028286,43028542,+,MamGyp-int,LTR,Gypsy,2920,3165,-1938,43025367,43030480 -3 + chr7 43047582 43048062 chr7,43046046,43048426,+,L1MA3,LINE,L1,28,2434,-5131,43046019,43053557 -1 + chr7 43059096 43059550 chr7,43059096,43065116,+,L1PA2,LINE,L1,127,6154,-1,43058970,43065117 -1 + chr7 43118947 43119004 chr7,43118852,43119004,+,L2a,LINE,L2,1766,1936,-1483,43117087,43120487 +2 + chr7 43119013 43119173 chr7,43119013,43119173,-,L1ME3F,LINE,L1,-12,6231,6056,43119001,43125228 -6 - chr7 43148657 43148720 chr7,43148657,43148720,+,MIR3,SINE,MIR,14,79,-129,43148644,43148849 +6 + chr7 43148797 43148827 chr7,43148797,43148895,-,MER5A1,DNA,hAT-Charlie,-40,126,29,43148757,43148923 -4 - chr7 43161624 43161671 chr7,43161624,43161671,+,CR1-L3A_Croc,LINE,CR1,4109,4155,-133,43157516,43161804 +6 + chr7 43162926 43163025 chr7,43162792,43163025,-,MIRb,SINE,MIR,0,268,31,43162792,43163055 -2 - chr7 43509478 43509602 chr7,43509478,43509602,+,MIR3,SINE,MIR,89,208,0,43509390,43509602 -6 + chr7 43512002 43512082 chr7,43512002,43512082,-,L1M2c,LINE,L1,-5905,884,802,43506097,43512883 +6 - chr7 43940895 43941028 chr7,43940863,43941028,-,Charlie19a,DNA,hAT-Charlie,-203,183,21,43940660,43941048 +5 - chr7 43941796 43941910 chr7,43941796,43941910,+,AluJb,SINE,Alu,1,127,-185,43941796,43942095 -6 + chr7 43941917 43942099 chr7,43941917,43942099,+,MER77B,LTR,ERVL,9,208,-492,43941909,43942591 -6 + chr7 43942100 43942332 chr7,43942100,43942332,+,AluJo,SINE,Alu,81,301,-11,43942020,43942343 -6 + chr7 43942332 43942757 chr7,43942332,43942757,+,MER77B,LTR,ERVL,202,685,-15,43942131,43942772 -6 + chr7 43943352 43943578 chr7,43943352,43943578,+,MER20,DNA,hAT-Charlie,1,219,0,43943352,43943578 -6 + chr7 43943831 43943867 chr7,43943831,43943867,-,L2b,LINE,L2,-96,3279,3241,43943735,43947107 +6 - chr7 43944147 43944357 chr7,43944147,43944357,-,AluSx1,SINE,Alu,-105,207,1,43944042,43944357 +6 - chr7 43946304 43946324 chr7,43946304,43946814,-,L1ME4b,LINE,L1,-11,881,467,43946293,43947280 +2 - chr7 43952089 43952212 chr7,43952089,43952212,-,MIR,SINE,MIR,-34,228,98,43952055,43952309 +6 - chr7 44004046 44004334 chr7,44004023,44004334,-,AluSx,SINE,Alu,0,312,1,44004023,44004334 +5 - chr7 44004368 44004661 chr7,44004368,44004661,-,AluJo,SINE,Alu,-18,294,2,44004350,44004662 +6 - chr7 44013593 44013679 chr7,44013513,44013897,-,MSTA,LTR,ERVL-MaLR,-3,425,1,44013510,44013897 +3 - chr7 44039932 44040078 chr7,44039932,44040078,+,MIR3,SINE,MIR,12,161,-47,44039921,44040125 +6 + chr7 44040527 44040563 chr7,44040527,44040563,+,(CCCAG)n,Simple_repeat,Simple_repeat,1,36,0,44040527,44040563 +6 + chr7 44041234 44041273 chr7,44041234,44041273,+,(ATGA)n,Simple_repeat,Simple_repeat,1,39,0,44041234,44041273 +6 + chr7 44041281 44041376 chr7,44041281,44041376,+,AluJr,SINE,Alu,22,118,-194,44041260,44041570 +6 + chr7 44041427 44041699 chr7,44041427,44041699,-,AluSx1,SINE,Alu,-33,279,1,44041394,44041699 -6 - chr7 44041773 44041816 chr7,44041773,44041816,+,MIRc,SINE,MIR,113,155,-113,44041661,44041929 +6 + chr7 44041888 44042000 chr7,44041888,44042000,-,MER51A,LTR,ERV1,-518,116,1,44041370,44042000 -6 - chr7 44042026 44042306 chr7,44042026,44042329,+,AluSc,SINE,Alu,1,302,-7,44042026,44042336 +5 + chr7 44367140 44367186 chr7,44366370,44367186,+,L1MD2,LINE,L1,5880,6731,-19,44360491,44367205 -5 + chr7 44367195 44367230 chr7,44367195,44367230,+,U2,snRNA,snRNA,1,35,-153,44367195,44367383 -6 + chr7 44367239 44369292 chr7,44367239,44371667,+,L1M2a,LINE,L1,403,4924,-2638,44366837,44374305 -1 + chr7 44785050 44785115 chr7,44784961,44785115,+,MER45A,DNA,hAT-Tip100,1,154,-24,44784961,44785139 -5 + chr7 44849069 44849231 chr7,44849069,44849231,+,AluJb,SINE,Alu,141,303,-9,44848929,44849240 +6 + chr7 44884996 44885043 chr7,44884996,44885043,+,(CGCCCGC)n,Simple_repeat,Simple_repeat,1,49,0,44884996,44885043 +6 + chr7 44885266 44885513 chr7,44885266,44885513,+,(CGC)n,Simple_repeat,Simple_repeat,1,257,0,44885266,44885513 +6 + chr7 44885919 44886147 chr7,44885919,44886147,-,L2b,LINE,L2,-180,3195,2916,44885739,44889062 -6 - chr7 44958999 44959283 chr7,44958720,44959283,+,L1MB7,LINE,L1,5622,6169,-15,44953099,44959298 -5 + chr7 44959389 44959459 chr7,44959389,44959459,+,MIRb,SINE,MIR,114,187,-81,44959276,44959540 -6 + chr7 44960114 44960172 chr7,44960114,44960172,+,MSTC,LTR,ERVL-MaLR,273,335,-93,44959842,44960265 -6 + chr7 44984007 44984385 chr7,44984007,44984385,-,LTR40b,LTR,ERVL,-35,427,16,44983972,44984400 +6 - chr7 44984636 44984823 chr7,44984636,44984823,+,MIRc,SINE,MIR,28,246,-16,44984609,44984839 -6 + chr7 44985150 44985334 chr7,44985150,44985334,+,MER3,DNA,hAT-Charlie,1,209,0,44985150,44985334 -6 + chr7 45460932 45460970 chr7,45460932,45461102,+,MIR1_Amn,SINE,MIR,13,188,-20,45460920,45461122 +4 + chr7 45529437 45529536 chr7,45527328,45529631,-,L1MD1,LINE,L1,-1,6241,3980,45527327,45533610 -3 - chr7 45542000 45542121 chr7,45541933,45542121,-,MIR3,SINE,MIR,-48,220,14,45541885,45542134 -2 - chr7 45979909 45980002 chr7,45979741,45980002,+,MER5C,DNA,hAT-Charlie,16,311,-2,45979726,45980004 +2 + chr7 46000823 46000898 chr7,46000823,46002951,+,L1M3,LINE,L1,2919,5132,-1008,45997905,46003959 +5 + chr7 46277472 46277516 chr7,46276925,46277916,-,L1MD3,LINE,L1,-1396,6646,5526,46275529,46283441 -3 - chr7 46302120 46302168 chr7,46302013,46302326,-,AluJr,SINE,Alu,-3,309,2,46302010,46302327 -1 - chr7 46481246 46481362 chr7,46481216,46481362,-,L3,LINE,CR1,-229,3870,3731,46480987,46485092 +4 - chr7 46481504 46481578 chr7,46481504,46481660,-,L3,LINE,CR1,-630,3469,3294,46480874,46484953 +1 - chr7 46674185 46674251 chr7,46674185,46674342,+,MIRb,SINE,MIR,72,248,-20,46674114,46674362 -2 + chr7 46676075 46676133 chr7,46675409,46676229,+,Arthur1,DNA,hAT-Tip100,200,1079,-2868,46675210,46679097 -3 + chr7 46677795 46677899 chr7,46677719,46678073,-,THE1A,LTR,ERVL-MaLR,0,355,1,46677719,46678073 +3 - chr7 46687879 46688212 chr7,46687825,46688212,-,MSTA,LTR,ERVL-MaLR,0,428,1,46687825,46688212 +5 - chr7 46688214 46688654 chr7,46688214,46688654,-,MSTA-int,LTR,ERVL-MaLR,-2,1629,1192,46688212,46689845 +6 - chr7 46688613 46688657 chr7,46688613,46688657,-,AluSc5,SINE,Alu,-127,182,139,46688486,46688795 +6 - chr7 46688997 46689160 chr7,46688997,46689160,-,MER53,DNA,hAT,-21,172,5,46688976,46689164 +6 - chr7 46692811 46692830 chr7,46692466,46692830,+,L1M4,LINE,L1,1208,1576,-6044,46691259,46698874 -4 + chr7 46692854 46692943 chr7,46692854,46692943,+,MER135,DNA,DNA,76,176,-52,46692779,46692995 -6 + chr7 46697003 46697122 chr7,46695111,46697207,+,L1MC2,LINE,L1,245,2049,-4702,46694867,46701909 -1 + chr7 46890625 46890723 chr7,46890608,46890723,-,L2,LINE,L2,-1355,2064,1943,46889253,46892665 +5 - chr7 46969711 46969900 chr7,46969711,46969900,-,LTR105_Mam,LTR,ERVL,-254,346,163,46969457,46970062 -1 - chr7 46969900 46969913 chr7,46969900,46970324,-,MER66B,LTR,ERV1,0,486,2,46969900,46970325 -4 - chr7 46972390 46972468 chr7,46972390,46972468,-,L2a,LINE,L2,-6,3420,3290,46972384,46975757 -6 - chr7 46972507 46972623 chr7,46972507,46972623,+,MLT1J,LTR,ERVL-MaLR,220,337,-175,46972288,46972798 +6 + chr7 47027455 47027479 chr7,47027455,47027479,+,(TAT)n,Simple_repeat,Simple_repeat,1,24,0,47027455,47027479 +6 + chr7 47621939 47622337 chr7,47621721,47622564,-,LTR1A2,LTR,ERV1,-8,829,1,47621713,47622564 -1 - chr7 47627261 47627519 chr7,47627227,47627519,+,MLT1F1,LTR,ERVL-MaLR,20,347,-222,47627208,47627741 +2 + chr7 47627519 47627802 chr7,47627519,47627955,-,LOR1b,LTR,ERV1,0,461,1,47627519,47627955 -4 - chr7 47628697 47629715 chr7,47628295,47629715,+,LTR12C,LTR,ERV1,3,1579,0,47628293,47629715 +2 + chr7 47629715 47629893 chr7,47629715,47629901,+,Tigger3b,DNA,TcMar-Tigger,95,278,-953,47629621,47630854 +5 + chr7 47761476 47761513 chr7,47760572,47761708,-,L1MA1,LINE,L1,0,6302,5191,47760572,47766898 -1 - chr7 47765829 47766100 chr7,47765783,47766100,-,LTR40b,LTR,ERVL,0,462,148,47765783,47766247 -2 - chr7 47766304 47766772 chr7,47766304,47766843,-,L1ME3Cz,LINE,L1,-653,344,1,47765651,47766843 -5 - chr7 48663254 48663305 chr7,48663206,48663348,-,L2a,LINE,L2,-54,3372,3200,48663152,48666547 +1 - chr7 48848124 48848164 chr7,48848124,48848164,+,(CG)n,Simple_repeat,Simple_repeat,1,43,0,48848124,48848164 +6 + chr7 48849538 48849809 chr7,48849538,48849809,+,MLT1O,LTR,ERVL-MaLR,120,406,-136,48849419,48849945 +6 + chr7 48850563 48850803 chr7,48850563,48850803,+,LTR23,LTR,ERV1,222,445,0,48850342,48850803 +6 + chr7 49230240 49230298 chr7,49230240,49230298,+,(TTA)n,Simple_repeat,Simple_repeat,1,60,0,49230240,49230298 +6 + chr7 49230298 49230334 chr7,49230298,49231283,-,L1PA3,LINE,L1,-18,6137,5160,49230280,49236442 -4 - chr7 49253190 49253331 chr7,49253190,49253486,-,AluSx4,SINE,Alu,-10,300,1,49253180,49253486 -4 - chr7 49760897 49761564 chr7,49760823,49761564,+,L1ME2,LINE,L1,5211,5983,-181,49755613,49761745 -5 + chr7 49761564 49761995 chr7,49761564,49761995,-,MER65A,LTR,ERV1,0,445,3,49761564,49761997 +6 - chr7 49761995 49762162 chr7,49761995,49762162,+,L1ME2,LINE,L1,5984,6161,-3,49756012,49762165 -6 + chr7 49762170 49762764 chr7,49762170,49762795,+,Charlie29a,DNA,hAT-Charlie,103,719,0,49762068,49762795 -1 + chr7 50141559 50141688 chr7,50141559,50141688,+,MIRb,SINE,MIR,78,211,-57,50141482,50141745 -6 + chr7 50141727 50142027 chr7,50141727,50142027,-,AluY,SINE,Alu,-10,301,1,50141717,50142027 +6 - chr7 50142719 50142823 chr7,50142604,50142883,-,L1ME3E,LINE,L1,-10,6232,5944,50142594,50148826 +1 - chr7 50202310 50202488 chr7,50202310,50202488,+,MIRb,SINE,MIR,16,211,-57,50202295,50202545 -6 + chr7 50202505 50202577 chr7,50202505,50202577,-,MLT1H,LTR,ERVL-MaLR,-22,467,396,50202483,50202972 +6 - chr7 50202659 50202938 chr7,50202659,50202938,-,MLT1H,LTR,ERVL-MaLR,-227,322,62,50202432,50202999 +6 - chr7 50274790 50274828 chr7,50274775,50274828,-,L2c,LINE,L2,-1,3386,3335,50274774,50278162 +5 - chr7 50275353 50275381 chr7,50275159,50275381,-,MIR,SINE,MIR,-29,233,9,50275130,50275389 +4 - chr7 50275562 50275622 chr7,50275519,50275717,+,MIRb,SINE,MIR,3,234,-34,50275517,50275751 -1 + chr7 50541394 50541409 chr7,50541394,50541754,+,MLT1A,LTR,ERVL-MaLR,1,374,0,50541394,50541754 +4 + chr7 50542245 50542305 chr7,50542073,50542305,+,ORSL,DNA,hAT-Tip100,22,275,0,50542052,50542305 +2 + chr7 50839363 50839470 chr7,50839203,50839470,+,L3,LINE,CR1,2117,2403,-1696,50837087,50841166 -5 + chr7 50839472 50839513 chr7,50839472,50839513,+,(ACA)n,Simple_repeat,Simple_repeat,1,41,0,50839472,50839513 -6 + chr7 50841814 50841867 chr7,50841714,50841867,-,MIRb,SINE,MIR,-11,257,97,50841703,50841963 +4 - chr7 50866747 50866770 chr7,50866450,50866851,+,MSTB,LTR,ERVL-MaLR,5,426,0,50866446,50866851 +1 + chr7 51022598 51022737 chr7,51022597,51022737,+,MIR,SINE,MIR,17,155,-107,51022581,51022844 +2 + chr7 52178526 52178545 chr7,52178370,52178545,-,MIR,SINE,MIR,0,262,80,52178370,52178624 +4 - chr7 52192640 52192913 chr7,52192640,52193150,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,52192640,52193150 -1 + chr7 53559214 53559418 chr7,53559172,53559925,+,L1MC5a,LINE,L1,670,1469,-1308,53558503,53561233 -5 + chr7 53655509 53655876 chr7,53655275,53655876,+,L1M5,LINE,L1,4888,5513,-660,53650388,53656536 -5 + chr7 53655873 53656173 chr7,53655873,53656173,+,L1ME3B,LINE,L1,5661,5927,-315,53650213,53656488 -6 + chr7 53691927 53692089 chr7,53691744,53693381,+,L1MCb,LINE,L1,41,1813,-4938,53691704,53698319 -3 + chr7 53765127 53765245 chr7,53765035,53766066,-,L1MC1,LINE,L1,-19,6314,5260,53765016,53771325 +3 - chr7 53765483 53766066 chr7,53765035,53766066,-,L1MC1,LINE,L1,-19,6314,5260,53765016,53771325 +4 - chr7 53811596 53811931 chr7,53811596,53812122,-,MLT2B3,LTR,ERVL,-5,549,1,53811591,53812122 +1 - chr7 53926703 53926753 chr7,53926703,53926753,+,(TG)n,Simple_repeat,Simple_repeat,1,50,0,53926703,53926753 -6 + chr7 53930028 53930248 chr7,53929855,53930328,+,MLT1D,LTR,ERVL-MaLR,8,505,0,53929848,53930328 -3 + chr7 54330697 54330818 chr7,54329994,54330847,-,MER21C,LTR,ERVL,-41,897,16,54329953,54330862 -1 - chr7 54349285 54349500 chr7,54349285,54349500,+,L3b,LINE,CR1,4613,4837,-395,54344673,54349895 +6 + chr7 54557252 54557295 chr7,54557252,54557317,+,MIR,SINE,MIR,36,112,-150,54557217,54557467 +4 + chr7 54558310 54558539 chr7,54558310,54558539,+,MIRb,SINE,MIR,20,242,-26,54558291,54558565 +6 + chr7 54559284 54559433 chr7,54559284,54559433,+,L1ME4a,LINE,L1,4456,4607,-1539,54554829,54560972 +6 + chr7 54559500 54559660 chr7,54559500,54559660,+,L1ME4c,LINE,L1,252,407,-423,54559249,54560083 +6 + chr7 54559763 54559971 chr7,54559763,54560063,+,L1ME4a,LINE,L1,5791,6124,0,54553973,54560063 +4 + chr7 54576052 54576293 chr7,54576008,54576424,-,LTR16C,LTR,ERVL,-1,488,73,54576007,54576496 +5 - chr7 54578328 54578679 chr7,54578328,54578679,-,ERVL-E-int,LTR,ERVL,-910,4757,4403,54577418,54583081 +6 - chr7 55179750 55180002 chr7,55179674,55180002,+,MER2,DNA,TcMar-Tigger,1,345,0,55179674,55180002 -5 + chr7 55182115 55182444 chr7,55182115,55182444,+,MamGypsy2-I,LTR,Gypsy,3292,3641,-525,55178824,55182969 -6 + chr7 55573171 55573250 chr7,55573168,55573250,-,L2b,LINE,L2,-6,3369,3278,55573162,55576527 -1 - chr7 55588326 55588336 chr7,55588326,55588488,-,MIR,SINE,MIR,-92,176,7,55588234,55588494 -5 - chr7 55593861 55593896 chr7,55593861,55593924,-,SVA_A,Retroposon,SVA,-1089,298,235,55592772,55594158 -4 - chr7 55594584 55594922 chr7,55594454,55594922,-,REP522,Satellite,telo,-472,1345,862,55593982,55595783 -2 - chr7 56482298 56482354 chr7,56482298,56482354,-,Charlie16a,DNA,hAT-Charlie,-206,136,79,56482092,56482432 +6 - chr7 56496747 56496794 chr7,56496747,56496794,+,G-rich,Low_complexity,Low_complexity,1,50,0,56496747,56496794 +6 + chr7 56497014 56497208 chr7,56497014,56497208,+,L1MA9,LINE,L1,6034,6238,-74,56490981,56497282 +6 + chr7 56534230 56534680 chr7,56532826,56534680,+,L1MB3,LINE,L1,3846,5813,-606,56528981,56535286 -5 + chr7 56534680 56534983 chr7,56534680,56534983,+,AluSx3,SINE,Alu,3,304,-7,56534678,56534990 -6 + chr7 56534983 56535577 chr7,56534983,56535577,+,L1MB3,LINE,L1,5814,6417,-2,56529170,56535579 -6 + chr7 56535585 56535723 chr7,56535585,56535723,+,L1ME3B,LINE,L1,5815,5951,-291,56529771,56536014 -6 + chr7 56535828 56536560 chr7,56535828,56536560,+,L1MEb,LINE,L1,519,1318,-4924,56535310,56541484 -6 + chr7 56536730 56536779 chr7,56536730,56536779,-,Charlie16a,DNA,hAT-Charlie,-206,136,86,56536524,56536864 +6 - chr7 56823375 56823406 chr7,56823375,56823406,+,(GAGCT)n,Simple_repeat,Simple_repeat,1,31,0,56823375,56823406 -6 + chr7 56833080 56833138 chr7,56833005,56833415,-,MER1A,DNA,hAT-Charlie,-94,435,1,56832911,56833415 +3 - chr7 56835196 56835232 chr7,56835122,56835232,-,MER8,DNA,TcMar-Tigger,0,239,135,56835122,56835366 +4 - chr7 56835233 56835388 chr7,56835233,56835418,+,AluJb,SINE,Alu,120,304,-8,56835114,56835426 -2 + chr7 56848758 56848777 chr7,56848340,56848777,-,MER1A,DNA,hAT-Charlie,-39,490,56,56848301,56848832 +4 - chr7 57221169 57221241 chr7,57221157,57221241,+,(TGGAGC)n,Simple_repeat,Simple_repeat,1,88,0,57221157,57221241 -5 + chr7 57221277 57221373 chr7,57221277,57221373,-,D20S16,Satellite,Satellite,-4,94,1,57221273,57221373 +6 - chr7 57221400 57221573 chr7,57221400,57221573,-,MLT2B4,LTR,ERVL,-107,449,277,57221293,57221849 +6 - chr7 57402181 57402755 chr7,57402068,57402755,+,L1M4a1,LINE,L1,792,1604,-975,57401277,57403730 -5 + chr7 57402858 57402877 chr7,57402858,57402877,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,57402858,57402877 -6 + chr7 57402979 57403035 chr7,57402979,57403035,-,Charlie16a,DNA,hAT-Charlie,-206,136,79,57402773,57403113 +6 - chr7 57403158 57403464 chr7,57403158,57403464,+,AluSx1,SINE,Alu,1,302,-10,57403158,57403474 -6 + chr7 57404154 57404248 chr7,57404154,57404248,+,G-rich,Low_complexity,Low_complexity,1,96,0,57404154,57404248 -6 + chr7 63350021 63350063 chr7,63350021,63350063,+,(CGGCG)n,Simple_repeat,Simple_repeat,1,44,0,63350021,63350063 +6 + chr7 63350228 63350252 chr7,63350228,63350252,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,63350228,63350252 +6 + chr7 63350992 63351366 chr7,63350992,63351366,-,L1MCb,LINE,L1,-5643,402,34,63345349,63351399 -6 - chr7 63355173 63355294 chr7,63355173,63355294,+,Charlie16a,DNA,hAT-Charlie,5,136,-206,63355169,63355500 +6 + chr7 63359063 63359088 chr7,63358789,63359088,-,MER2,DNA,TcMar-Tigger,-6,339,2,63358783,63359089 -2 - chr7 63359205 63359306 chr7,63359205,63359509,+,AluSp,SINE,Alu,2,306,-7,63359204,63359516 +5 + chr7 63388808 63388908 chr7,63388605,63388908,-,AluSp,SINE,Alu,-8,305,2,63388597,63388909 +5 - chr7 63389025 63389051 chr7,63389025,63389324,+,MER2,DNA,TcMar-Tigger,2,339,-6,63389024,63389330 -2 + chr7 63392819 63392940 chr7,63392819,63392940,-,Charlie16a,DNA,hAT-Charlie,-206,136,5,63392613,63392944 +6 - chr7 63395372 63395439 chr7,63395372,63395664,+,L1PB3,LINE,L1,5860,6152,-2,63389513,63395666 +5 + chr7 63396754 63397073 chr7,63396754,63397073,+,L1MEd,LINE,L1,37,364,-5681,63396718,63402754 -6 + chr7 63397861 63397885 chr7,63397861,63397885,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,63397861,63397885 -6 + chr7 63888200 63888439 chr7,63888115,63888586,-,LTR47B3,LTR,ERVL,0,464,1,63888115,63888586 +5 - chr7 63899172 63899446 chr7,63899172,63899473,+,AluSx1,SINE,Alu,1,300,-12,63899172,63899485 -1 + chr7 63917795 63917994 chr7,63917480,63918127,-,L1M4,LINE,L1,-3089,3057,2390,63914391,63920516 -5 - chr7 64027852 64027912 chr7,64027634,64027932,+,AluSx3,SINE,Alu,3,298,-13,64027632,64027945 -5 + chr7 64028065 64028264 chr7,64027932,64028264,+,BSR/Beta,Satellite,Satellite,1,327,-5,64027932,64028269 -5 + chr7 64028344 64028410 chr7,64028344,64029131,+,BSR/Beta,Satellite,Satellite,1,772,-45,64028344,64029176 -1 + chr7 64028516 64028774 chr7,64028344,64029131,+,BSR/Beta,Satellite,Satellite,1,772,-45,64028344,64029176 -1 + chr7 64029286 64029361 chr7,64029154,64030675,+,BSR/Beta,Satellite,Satellite,1,1538,-3,64029154,64030678 -1 + chr7 64029997 64030105 chr7,64029154,64030675,+,BSR/Beta,Satellite,Satellite,1,1538,-3,64029154,64030678 -1 + chr7 64140495 64140514 chr7,64140275,64140514,-,AluJr,SINE,Alu,-28,284,44,64140247,64140557 -1 - chr7 66119603 66119721 chr7,66118884,66119721,+,MER21A,LTR,ERVL,70,913,-18,66118815,66119739 -5 + chr7 66119731 66119742 chr7,66119731,66119844,-,MER2,DNA,TcMar-Tigger,-151,194,80,66119580,66119923 +2 - chr7 66120627 66120697 chr7,66120627,66120697,+,Tigger2a,DNA,TcMar-Tigger,1,74,-994,66120627,66121691 -6 + chr7 66376624 66376727 chr7,66376624,66376727,+,(CGAGG)n,Simple_repeat,Simple_repeat,1,105,0,66376624,66376727 -6 + chr7 66379577 66379855 chr7,66379577,66379855,-,MER1A,DNA,hAT-Charlie,-227,302,4,66379350,66379858 +5 - chr7 66382237 66382278 chr7,66382161,66382278,-,MER8,DNA,TcMar-Tigger,-2,237,126,66382159,66382403 +4 - chr7 66382284 66382431 chr7,66382284,66382461,+,AluJb,SINE,Alu,133,309,-3,66382152,66382464 -5 + chr7 66390082 66390110 chr7,66390006,66390110,+,L2b,LINE,L2,3053,3164,-211,66386954,66390321 -4 + chr7 66391398 66391425 chr7,66391002,66391425,-,MER1A,DNA,hAT-Charlie,-36,493,59,66390966,66391483 +4 - chr7 66393330 66393729 chr7,66392754,66395116,-,SVA_E,Retroposon,SVA,-23,1359,3,66392731,66395118 +1 - chr7 66400322 66400437 chr7,66400167,66400474,+,AluJb,SINE,Alu,1,312,0,66400167,66400474 -3 + chr7 66400923 66401027 chr7,66400747,66401247,-,MER1A,DNA,hAT-Charlie,0,529,1,66400747,66401247 +3 - chr7 66401195 66401247 chr7,66400747,66401247,-,MER1A,DNA,hAT-Charlie,0,529,1,66400747,66401247 +4 - chr7 66401247 66401338 chr7,66401247,66401428,-,ERVL-E-int,LTR,ERVL,-5375,292,105,66395872,66401532 +1 - chr7 66474797 66474830 chr7,66474797,66474830,+,(GGC)n,Simple_repeat,Simple_repeat,1,33,0,66474797,66474830 +6 + chr7 66475167 66475279 chr7,66475167,66475279,-,AluSx,SINE,Alu,-199,113,1,66474968,66475279 -6 - chr7 66475366 66475442 chr7,66475366,66475442,+,L1MEg,LINE,L1,1335,1408,-4676,66474032,66480118 +6 + chr7 66475442 66475749 chr7,66475442,66475749,+,AluSc8,SINE,Alu,1,308,-3,66475442,66475752 +5 + chr7 66491049 66491325 chr7,66490886,66491325,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,66490886,66491327 -5 + chr7 66491356 66491471 chr7,66491356,66491673,+,AluSz,SINE,Alu,1,311,-1,66491356,66491674 -2 + chr7 66492009 66492147 chr7,66491853,66492147,-,AluSz6,SINE,Alu,-14,298,2,66491839,66492148 +5 - chr7 66493216 66493285 chr7,66493191,66493285,-,AluJo,SINE,Alu,-20,292,199,66493171,66493483 +4 - chr7 66493311 66493384 chr7,66493311,66493384,-,AluJr,SINE,Alu,-195,117,45,66493116,66493428 +6 - chr7 66526088 66526225 chr7,66526060,66526225,-,MamGypLTR1d,LTR,Gypsy,-10,803,625,66526050,66526849 +5 - chr7 66526443 66526762 chr7,66526443,66526762,+,AluSq4,SINE,Alu,1,311,0,66526443,66526762 -6 + chr7 66526775 66527080 chr7,66526775,66527080,+,AluJr4,SINE,Alu,3,307,-5,66526773,66527085 -6 + chr7 66527183 66527496 chr7,66527183,66527496,-,AluSq2,SINE,Alu,0,313,2,66527183,66527497 +6 - chr7 66527643 66527935 chr7,66527643,66527935,+,AluJr,SINE,Alu,1,300,-12,66527643,66527947 -6 + chr7 66527964 66528011 chr7,66527964,66528011,+,MIR1_Amn,SINE,MIR,98,147,-83,66527867,66528094 -6 + chr7 66528410 66528705 chr7,66528410,66528705,+,AluSx1,SINE,Alu,2,300,-12,66528409,66528717 -6 + chr7 66528706 66529033 chr7,66528706,66529033,-,L2a,LINE,L2,-1262,2157,1792,66527444,66530824 +6 - chr7 66529035 66529182 chr7,66529035,66529182,-,AluSx1,SINE,Alu,-32,280,134,66529003,66529315 +6 - chr7 66529318 66529452 chr7,66529318,66529452,+,FLAM_C,SINE,Alu,2,133,-10,66529317,66529462 -6 + chr7 66529532 66529805 chr7,66529532,66529805,-,L2a,LINE,L2,-2331,1088,760,66527201,66530564 +6 - chr7 66530040 66530182 chr7,66530040,66530182,-,MIRb,SINE,MIR,-33,235,85,66530007,66530266 +6 - chr7 66530679 66530973 chr7,66530679,66530973,+,AluSx1,SINE,Alu,1,293,-19,66530679,66530992 -6 + chr7 66530973 66531264 chr7,66530973,66531264,+,AluJr,SINE,Alu,1,295,-17,66530973,66531281 -6 + chr7 66531309 66531378 chr7,66531309,66531378,+,CR1-3_Croc,LINE,CR1,2925,2994,-611,66528385,66531989 -6 + chr7 66531711 66531824 chr7,66531711,66531824,+,MIR3,SINE,MIR,21,146,-116,66531691,66531940 -6 + chr7 66531824 66531868 chr7,66531824,66531868,+,AluSx3,SINE,Alu,177,220,-91,66531648,66531959 -6 + chr7 66541242 66541270 chr7,66541151,66541270,+,MIRb,SINE,MIR,12,144,-124,66541140,66541394 -4 + chr7 66542066 66542355 chr7,66542066,66542355,+,AluJo,SINE,Alu,2,288,-24,66542065,66542379 -6 + chr7 66542364 66542549 chr7,66542364,66542669,+,AluSz6,SINE,Alu,1,306,-6,66542364,66542675 -1 + chr7 66665170 66665287 chr7,66665146,66665443,-,AluJb,SINE,Alu,-14,298,1,66665132,66665443 -3 - chr7 66667528 66667610 chr7,66667528,66667647,+,MIR3,SINE,MIR,44,169,-39,66667485,66667686 +4 + chr7 66668885 66668913 chr7,66668885,66668960,-,MIR,SINE,MIR,-127,135,60,66668758,66669019 -4 - chr7 66669743 66669855 chr7,66669688,66670316,+,L2c,LINE,L2,2427,3138,-249,66667262,66670565 +5 + chr7 66739891 66739977 chr7,66739891,66739977,+,MIRb,SINE,MIR,37,126,-82,66739855,66740059 -6 + chr7 66739980 66740236 chr7,66739980,66740236,-,AluJr,SINE,Alu,-22,290,37,66739958,66740272 +6 - chr7 67333140 67333457 chr7,67333140,67333457,+,AluYb8,SINE,Alu,1,317,-1,67333140,67333458 +6 + chr7 67339450 67339573 chr7,67339430,67339594,-,AluJr4,SINE,Alu,-12,300,137,67339418,67339730 -3 - chr7 67339797 67339914 chr7,67339609,67339914,-,AluJr,SINE,Alu,-13,299,1,67339596,67339914 -2 - chr7 67691058 67691398 chr7,67690936,67691398,-,L1MEd,LINE,L1,-5941,1145,698,67684995,67692095 +5 - chr7 67696923 67697029 chr7,67696562,67697301,+,L1M6,LINE,L1,1250,2030,-4466,67695313,67701767 -1 + chr7 68091223 68091325 chr7,68091201,68091480,-,AluSg,SINE,Alu,-15,295,1,68091186,68091480 -1 - chr7 68118847 68119209 chr7,68118847,68119675,+,LTR8B,LTR,ERV1,1,820,0,68118847,68119675 +5 + chr7 68155029 68155126 chr7,68154996,68155126,-,AluJo,SINE,Alu,-94,218,90,68154902,68155215 +4 - chr7 68184805 68184916 chr7,68184805,68184986,+,MIRb,SINE,MIR,17,203,-65,68184789,68185051 -2 + chr7 68288055 68288198 chr7,68287967,68288198,-,MIRb,SINE,MIR,-7,261,9,68287960,68288206 +4 - chr7 69040152 69040259 chr7,69040076,69040259,-,AluJr4,SINE,Alu,-139,173,1,69039937,69040259 -1 - chr7 69040956 69041005 chr7,69040956,69041005,-,L3,LINE,CR1,-3,4096,4048,69040953,69045052 -6 - chr7 69046665 69046694 chr7,69046564,69046694,-,MIRc,SINE,MIR,-31,237,107,69046533,69046800 -2 - chr7 69189167 69189318 chr7,69189167,69189676,+,MLT2B3,LTR,ERVL,1,508,-46,69189167,69189722 -1 + chr7 69271965 69271988 chr7,69271517,69271988,-,L1MCa,LINE,L1,-3950,2695,2200,69267567,69274187 +4 - chr7 69271992 69272272 chr7,69271992,69272272,-,L1MCa,LINE,L1,-5765,280,2,69266227,69272273 +1 - chr7 69359082 69359197 chr7,69358967,69359197,-,MIRb,SINE,MIR,-17,251,15,69358950,69359211 +5 - chr7 69359349 69359462 chr7,69359349,69359665,+,AluJo,SINE,Alu,1,310,-2,69359349,69359667 -2 + chr7 72924420 72924610 chr7,72924420,72924610,-,L1MB7,LINE,L1,0,6178,5959,72924420,72930568 +6 - chr7 73609262 73609544 chr7,73609236,73609544,-,AluSq,SINE,Alu,0,313,1,73609236,73609544 +5 - chr7 73609554 73609587 chr7,73609554,73609587,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,73609554,73609587 -6 + chr7 73609635 73609674 chr7,73609635,73609674,-,AluJo,SINE,Alu,-27,285,247,73609608,73609920 +6 - chr7 73609686 73609976 chr7,73609686,73609976,-,AluSz,SINE,Alu,-27,285,1,73609659,73609976 +6 - chr7 73610475 73610774 chr7,73610475,73610774,-,AluJb,SINE,Alu,-23,289,1,73610452,73610774 +6 - chr7 73610820 73611123 chr7,73610820,73611123,-,AluSz,SINE,Alu,-9,303,1,73610811,73611123 +6 - chr7 73986436 73986477 chr7,73986436,73986477,+,(GGCG)n,Simple_repeat,Simple_repeat,1,42,0,73986436,73986477 +6 + chr7 73986699 73986800 chr7,73986699,73986800,+,MIR3,SINE,MIR,65,170,-38,73986635,73986838 +6 + chr7 73986831 73986880 chr7,73986831,73986880,-,L2b,LINE,L2,-18,3357,3309,73986813,73990188 -6 - chr7 73986932 73987260 chr7,73986932,73987260,-,AluSx1,SINE,Alu,0,312,1,73986932,73987260 -6 - chr7 73987263 73987560 chr7,73987263,73987560,-,AluJr,SINE,Alu,-11,301,1,73987252,73987560 -6 - chr7 73988012 73988126 chr7,73988012,73988126,-,MIRb,SINE,MIR,-85,183,67,73987927,73988192 -6 - chr7 73988558 73988611 chr7,73988558,73988611,+,MamTip2,DNA,hAT-Tip100,91,141,-164,73988468,73988775 +6 + chr7 74059576 74059695 chr7,74059399,74059695,+,AluSx3,SINE,Alu,1,293,-18,74059399,74059713 -5 + chr7 74059721 74059849 chr7,74059721,74059849,-,MIR3,SINE,MIR,-62,146,13,74059659,74059861 +6 - chr7 74059895 74060019 chr7,74059895,74060019,+,(TGGTGT)n,Simple_repeat,Simple_repeat,1,124,0,74059895,74060019 -6 + chr7 74606913 74606954 chr7,74606889,74606954,+,7SLRNA,srpRNA,srpRNA,227,307,-13,74606663,74606967 +1 + chr7 74699460 74699596 chr7,74699284,74699596,-,AluSx1,SINE,Alu,-4,308,1,74699280,74699596 +5 - chr7 74726572 74726828 chr7,74726572,74726828,+,AluJr4,SINE,Alu,12,277,-35,74726561,74726863 -6 + chr7 74726834 74726944 chr7,74726834,74726944,+,(AGAT)n,Simple_repeat,Simple_repeat,1,112,0,74726834,74726944 -6 + chr7 74727429 74727522 chr7,74727429,74727565,+,MIRb,SINE,MIR,40,175,-87,74727390,74727652 -2 + chr7 75225433 75225478 chr7,75225177,75225478,-,AluSq2,SINE,Alu,-11,302,2,75225166,75225479 -1 - chr7 75232377 75232460 chr7,75232341,75232460,+,MIRb,SINE,MIR,52,167,-95,75232290,75232555 +2 + chr7 75232989 75233014 chr7,75232989,75233103,+,AluJb,SINE,Alu,194,307,-5,75232796,75233108 +4 + chr7 75233732 75233811 chr7,75233548,75233811,+,AluJr,SINE,Alu,37,302,-10,75233512,75233821 +2 + chr7 75233813 75233924 chr7,75233813,75234022,+,L2b,LINE,L2,3116,3354,-21,75230698,75234043 +5 + chr7 75233936 75234022 chr7,75233813,75234022,+,L2b,LINE,L2,3116,3354,-21,75230698,75234043 +5 + chr7 75234139 75234239 chr7,75234139,75234239,-,L2c,LINE,L2,-269,3118,3020,75233870,75237258 -6 - chr7 75625089 75625204 chr7,75624925,75625204,-,AluSx1,SINE,Alu,-1,311,11,75624924,75625214 +5 - chr7 75625214 75625269 chr7,75625214,75625269,-,AluJo,SINE,Alu,-188,124,70,75625026,75625338 +6 - chr7 75625647 75625788 chr7,75625647,75625788,+,MLT1A1,LTR,ERVL-MaLR,2,161,-247,75625646,75626035 -6 + chr7 75625788 75625916 chr7,75625788,75625916,+,FLAM_C,SINE,Alu,1,128,-15,75625788,75625931 -6 + chr7 75625916 75626171 chr7,75625916,75626171,+,MLT1A1,LTR,ERVL-MaLR,162,406,-2,75625755,75626173 -6 + chr7 75626450 75626689 chr7,75626450,75626689,-,MIR,SINE,MIR,-7,255,1,75626443,75626689 +6 - chr7 75626801 75626872 chr7,75626801,75626872,+,MADE2,DNA,TcMar-Mariner,1,79,-1,75626801,75626873 -6 + chr7 75626879 75626913 chr7,75626879,75626913,+,(CA)n,Simple_repeat,Simple_repeat,1,34,0,75626879,75626913 -6 + chr7 75626914 75626970 chr7,75626914,75627012,+,L1ME4a,LINE,L1,5970,6068,-56,75620945,75627068 -1 + chr7 76044156 76044449 chr7,76044156,76044449,-,AluJo,SINE,Alu,-10,302,1,76044146,76044449 +6 - chr7 76044703 76044980 chr7,76044703,76044980,-,AluJb,SINE,Alu,-29,283,15,76044674,76044994 +6 - chr7 76045147 76045402 chr7,76045147,76045402,+,L2,LINE,L2,2578,2830,-589,76042570,76045991 -6 + chr7 76045414 76045709 chr7,76045414,76045709,+,AluSz,SINE,Alu,1,296,-16,76045414,76045725 -6 + chr7 76478766 76478806 chr7,76478712,76478806,+,MIRb,SINE,MIR,97,209,-59,76478616,76478865 -4 + chr7 76976871 76976911 chr7,76976817,76976911,+,MIRb,SINE,MIR,97,209,-59,76976721,76976970 -4 + chr7 77018909 77018997 chr7,77018689,77019076,+,MSTA,LTR,ERVL-MaLR,1,425,-3,77018689,77019079 +3 + chr7 77246340 77246359 chr7,77246161,77246359,-,L3,LINE,CR1,-98,4001,3789,77246063,77250147 +5 - chr7 77255326 77255362 chr7,77255118,77255362,-,MLT1H,LTR,ERVL-MaLR,-289,260,12,77254829,77255373 +4 - chr7 77257907 77257945 chr7,77257843,77257945,+,MIRb,SINE,MIR,8,125,-143,77257836,77258088 -4 + chr7 77257949 77258123 chr7,77257949,77258358,-,LTR16A1,LTR,ERVL,-1,455,51,77257948,77258408 +1 - chr7 77416711 77416761 chr7,77416711,77416761,+,MER5B,DNA,hAT-Charlie,125,177,-1,77416587,77416762 +6 + chr7 77421767 77421864 chr7,77421699,77422019,-,AluSc,SINE,Alu,0,309,1,77421699,77422019 -3 - chr7 77423454 77423605 chr7,77423222,77423679,+,L1MC4,LINE,L1,7222,7803,-239,77416001,77423918 +3 + chr7 77657676 77657904 chr7,77657676,77657904,-,L1ME2z,LINE,L1,-3,6441,6205,77657673,77664108 +6 - chr7 77658324 77658426 chr7,77658324,77658426,+,L2a,LINE,L2,3315,3426,0,77655010,77658426 -6 + chr7 77658651 77658678 chr7,77658651,77658678,+,(A)n,Simple_repeat,Simple_repeat,1,27,0,77658651,77658678 -6 + chr7 77658679 77658975 chr7,77658679,77658975,+,AluJo,SINE,Alu,1,289,-23,77658679,77658998 -6 + chr7 77659191 77659318 chr7,77659191,77659334,+,LTR88b,LTR,Gypsy?,684,833,-4,77658508,77659338 -2 + chr7 77661198 77661333 chr7,77661166,77661364,+,AluJb,SINE,Alu,107,311,-1,77661060,77661365 -3 + chr7 77683943 77684034 chr7,77683851,77684034,-,Charlie7a,DNA,hAT-Charlie,-68,204,16,77683783,77684049 +5 - chr7 77684037 77684333 chr7,77684037,77684593,+,L2c,LINE,L2,2862,3378,-9,77681176,77684602 -5 + chr7 77684810 77684930 chr7,77684810,77684930,-,FLAM_A,SINE,Alu,-11,131,1,77684799,77684930 +6 - chr7 77990384 77990677 chr7,77987877,77991087,-,L1PBa1,LINE,L1,-3320,3542,252,77984557,77991338 -1 - chr7 77990920 77991087 chr7,77987877,77991087,-,L1PBa1,LINE,L1,-3320,3542,252,77984557,77991338 -1 - chr7 77991202 77991314 chr7,77991202,77991314,+,MamRep1894,DNA,hAT,5,122,-1,77991198,77991315 +6 + chr7 77991940 77992013 chr7,77991940,77992013,-,L2,LINE,L2,-1356,2063,1991,77990584,77994003 -6 - chr7 77992335 77992623 chr7,77992335,77992652,+,AluSx1,SINE,Alu,1,311,-1,77992335,77992653 +5 + chr7 77994910 77994980 chr7,77994910,77994980,-,L1MC5a,LINE,L1,-481,2296,2226,77994429,77997205 -5 - chr7 78939850 78939884 chr7,78939784,78939974,+,MamRTE1,LINE,RTE-BovB,3460,3646,-166,78936325,78940140 +1 + chr7 79453599 79453632 chr7,79453599,79453632,+,(GGC)n,Simple_repeat,Simple_repeat,1,33,0,79453599,79453632 +1 + chr7 79453993 79454048 chr7,79453993,79454048,+,(GGAGCCG)n,Simple_repeat,Simple_repeat,1,56,0,79453993,79454048 +1 + chr7 79455163 79455374 chr7,79455163,79455401,+,MIRb,SINE,MIR,16,261,-7,79455148,79455408 +4 + chr7 79455890 79455995 chr7,79455769,79455995,-,MIR,SINE,MIR,-3,259,22,79455766,79456016 -1 - chr7 79458651 79458784 chr7,79458651,79458784,+,AluSc,SINE,Alu,178,309,0,79458474,79458784 +6 + chr7 79459247 79459413 chr7,79459247,79459413,-,Charlie16a,DNA,hAT-Charlie,-101,241,63,79459146,79459475 -5 - chr7 79459595 79459787 chr7,79459595,79459787,-,L2,LINE,L2,-1020,2399,2179,79458575,79461965 -5 - chr7 79461215 79461508 chr7,79461215,79461508,+,L3,LINE,CR1,1741,2074,-2025,79459475,79463533 +6 + chr7 79462078 79462441 chr7,79462078,79462441,+,L3,LINE,CR1,2384,2768,-1331,79459695,79463772 +6 + chr7 79462453 79462511 chr7,79462453,79462511,+,L3,LINE,CR1,2844,2901,-1198,79459610,79463709 +6 + chr7 79462914 79462961 chr7,79462914,79462961,+,(AATGTAC)n,Simple_repeat,Simple_repeat,1,50,0,79462914,79462961 +6 + chr7 79463046 79463368 chr7,79463046,79463368,-,AluSx1,SINE,Alu,-12,300,1,79463034,79463368 -6 - chr7 79464397 79464557 chr7,79464397,79464557,-,L2a,LINE,L2,-214,3212,3058,79464183,79467614 -6 - chr7 79464782 79465068 chr7,79464782,79465068,+,L2c,LINE,L2,3026,3329,-58,79461757,79465126 +6 + chr7 79465086 79465141 chr7,79465086,79465141,+,(TATGTAG)n,Simple_repeat,Simple_repeat,1,59,0,79465086,79465141 +6 + chr7 79466047 79466232 chr7,79466047,79466232,-,L1MC4,LINE,L1,-947,7095,6930,79465100,79473161 -6 - chr7 79466232 79466568 chr7,79466232,79466568,-,AluSz,SINE,Alu,0,312,1,79466232,79466568 -6 - chr7 79466568 79466851 chr7,79466568,79466851,-,L1MC4,LINE,L1,-1113,6929,6622,79465455,79473472 -6 - chr7 79467181 79467253 chr7,79467181,79467253,+,(AT)n,Simple_repeat,Simple_repeat,1,75,0,79467181,79467253 +6 + chr7 79470571 79470679 chr7,79470571,79470698,+,MLT1J,LTR,ERVL-MaLR,33,167,-345,79470539,79471043 +4 + chr7 80246415 80246501 chr7,80246415,80246501,-,ERV3-16A3_I-int,LTR,ERVL,-1603,3623,3536,80244812,80250036 +6 - chr7 80248732 80248866 chr7,80247511,80249046,-,ERV3-16A3_I-int,LTR,ERVL,-2189,3037,568,80245322,80249613 +3 - chr7 80263228 80263266 chr7,80263228,80263266,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,80263228,80263266 -6 + chr7 80302872 80302940 chr7,80302719,80302940,-,MIR,SINE,MIR,0,262,22,80302719,80302961 +4 - chr7 80312392 80312456 chr7,80312392,80312664,+,LTR16,LTR,ERVL,143,414,-24,80312250,80312688 -1 + chr7 80330192 80330527 chr7,80330089,80330533,-,LTR40b,LTR,ERVL,0,462,1,80330089,80330533 +5 - chr7 80331210 80331368 chr7,80331029,80333091,+,ERVL-B4-int,LTR,ERVL,436,2642,-3072,80330594,80336163 -3 + chr7 80331586 80331667 chr7,80331029,80333091,+,ERVL-B4-int,LTR,ERVL,436,2642,-3072,80330594,80336163 -3 + chr7 80333683 80333767 chr7,80333384,80333775,+,ERVL-B4-int,LTR,ERVL,4160,4573,-1094,80329225,80334869 -3 + chr7 80338748 80338927 chr7,80338679,80338928,+,LTR33,LTR,ERVL,228,492,-23,80338452,80338951 -5 + chr7 80360524 80360645 chr7,80360345,80360735,+,MSTA,LTR,ERVL-MaLR,1,427,-1,80360345,80360736 -3 + chr7 80372039 80372092 chr7,80372039,80372092,+,MIRb,SINE,MIR,139,193,-75,80371901,80372167 -6 + chr7 80374347 80374469 chr7,80374347,80374986,+,L4_B_Mam,LINE,RTE-X,3142,3811,-1130,80371206,80376116 -1 + chr7 80380309 80380473 chr7,80380309,80380473,-,AluJo,SINE,Alu,-10,302,137,80380299,80380609 +6 - chr7 80381851 80381999 chr7,80381059,80381999,-,L1ME3E,LINE,L1,-50,6192,5171,80381009,80387169 +4 - chr7 80383903 80384127 chr7,80383875,80384360,-,L1MC3,LINE,L1,-186,7599,7114,80383689,80391473 +1 - chr7 80384849 80384918 chr7,80384651,80384918,-,L1ME3E,LINE,L1,-1771,4375,4074,80382880,80388991 +4 - chr7 80389915 80390011 chr7,80389881,80390169,+,L2c,LINE,L2,2655,2952,-467,80387227,80390636 -1 + chr7 80391429 80391453 chr7,80391409,80391776,-,THE1B,LTR,ERVL-MaLR,0,364,1,80391409,80391776 +1 - chr7 80972564 80972594 chr7,80972564,80972594,+,(AACAA)n,Simple_repeat,Simple_repeat,1,31,0,80972564,80972594 -6 + chr7 80972779 80972890 chr7,80972779,80972890,-,MIR3,SINE,MIR,-64,144,20,80972715,80972909 +6 - chr7 80972895 80972932 chr7,80972895,80972932,+,(AATAAT)n,Simple_repeat,Simple_repeat,1,38,0,80972895,80972932 -6 + chr7 80973965 80974065 chr7,80973965,80974065,-,L2c,LINE,L2,-3,3384,3283,80973962,80977347 +6 - chr7 80974332 80974724 chr7,80974332,80975311,-,LTR12D,LTR,ERV1,0,1254,1,80974332,80975311 +1 - chr7 81187790 81187837 chr7,81187508,81187837,+,LTR16E1,LTR,ERVL,213,538,0,81187296,81187837 +1 + chr7 81189905 81189976 chr7,81188547,81191353,+,ERV3-16A3_I-int,LTR,ERVL,1225,4038,-1188,81187323,81192541 +5 + chr7 81190068 81190390 chr7,81188547,81191353,+,ERV3-16A3_I-int,LTR,ERVL,1225,4038,-1188,81187323,81192541 +5 + chr7 81528403 81528576 chr7,81528039,81528622,-,L1MDb,LINE,L1,-5782,627,17,81522257,81528638 +5 - chr7 81576452 81576475 chr7,81576452,81576475,+,(AC)n,Simple_repeat,Simple_repeat,1,23,0,81576452,81576475 -6 + chr7 81578893 81579023 chr7,81578893,81579023,+,MIRb,SINE,MIR,105,250,-18,81578789,81579041 -6 + chr7 81583120 81583270 chr7,81582970,81583493,+,MLT2F,LTR,ERVL,1,607,-56,81582970,81583549 -3 + chr7 82009177 82009262 chr7,82008988,82009344,+,THE1C,LTR,ERVL-MaLR,1,375,0,82008988,82009344 +1 + chr7 82023843 82023897 chr7,82023654,82025614,-,L1MB1,LINE,L1,-5,6865,4884,82023649,82030497 -3 - chr7 82027655 82027802 chr7,82027608,82027802,+,Tigger1,DNA,TcMar-Tigger,1,214,-2204,82027608,82030006 +2 + chr7 82027857 82029462 chr7,82027857,82029462,+,Tigger1,DNA,TcMar-Tigger,811,2418,0,82027047,82029462 +5 + chr7 82029700 82029768 chr7,82029700,82029768,+,(TATG)n,Simple_repeat,Simple_repeat,1,65,0,82029700,82029768 +6 + chr7 83362151 83362227 chr7,83361997,83362227,+,MER8,DNA,TcMar-Tigger,1,229,-10,83361997,83362237 +2 + chr7 84571492 84571784 chr7,84571492,84571784,+,L3,LINE,CR1,3799,4096,-3,84567694,84571787 +6 + chr7 84572224 84572274 chr7,84572224,84572274,+,(CATTTA)n,Simple_repeat,Simple_repeat,1,55,0,84572224,84572274 +6 + chr7 84572392 84572566 chr7,84572392,84572566,-,LFSINE_Vert,SINE,tRNA,-233,226,46,84572159,84572611 -6 - chr7 84573302 84573615 chr7,84573302,84573615,+,Arthur1,DNA,hAT-Tip100,2971,3331,-616,84570332,84574231 +6 + chr7 84573652 84573693 chr7,84573652,84573693,+,A-rich,Low_complexity,Low_complexity,1,43,0,84573652,84573693 +6 + chr7 84573750 84573923 chr7,84573750,84573923,+,Arthur1B,DNA,hAT-Tip100,1043,1224,-1,84572708,84573924 +6 + chr7 84574312 84574506 chr7,84574312,84574506,-,MLT1J,LTR,ERVL-MaLR,-24,488,283,84574288,84574788 -6 - chr7 84574546 84574623 chr7,84574546,84574623,-,MLT1J,LTR,ERVL-MaLR,-294,218,140,84574252,84574762 -6 - chr7 85449860 85449902 chr7,85449807,85449902,+,L2a,LINE,L2,3298,3417,-9,85446510,85449911 +2 + chr7 85449903 85449972 chr7,85449903,85449972,+,GA-rich,Low_complexity,Low_complexity,1,70,0,85449903,85449972 +6 + chr7 86775229 86775271 chr7,86775229,86775277,-,L4_A_Mam,LINE,RTE-X,-5,4985,4938,86775224,86780214 +2 - chr7 86775945 86776022 chr7,86775746,86776028,+,L2c,LINE,L2,3020,3325,-62,86772727,86776090 -1 + chr7 87109539 87109988 chr7,87109062,87109988,-,L1M5,LINE,L1,-661,5523,4548,87108401,87114535 -1 - chr7 87110014 87110248 chr7,87110014,87110248,-,AluSz,SINE,Alu,-78,234,1,87109936,87110248 -6 - chr7 87110435 87110598 chr7,87110435,87110598,+,MLT1H,LTR,ERVL-MaLR,102,265,-146,87110334,87110744 +6 + chr7 87111193 87111282 chr7,87111193,87111432,-,MIRb,SINE,MIR,-1,261,9,87111192,87111440 -5 - chr7 87151561 87151658 chr7,87151561,87151780,+,MIR,SINE,MIR,14,256,-6,87151548,87151786 -2 + chr7 87151750 87151780 chr7,87151561,87151780,+,MIR,SINE,MIR,14,256,-6,87151548,87151786 -4 + chr7 87325225 87325444 chr7,87323383,87326725,-,MER61-int,LTR,ERV1,-1,7187,872,87323382,87327596 +5 - chr7 88231502 88232167 chr7,88231502,88232418,+,L1MB2,LINE,L1,5177,6121,-50,88226326,88232468 +1 + chr7 88241312 88241436 chr7,88241287,88241595,-,AluSz6,SINE,Alu,-9,303,1,88241278,88241595 -5 - chr7 88243773 88243850 chr7,88243681,88243850,-,LTR33A,LTR,ERVL,-350,170,3,88243331,88243852 -1 - chr7 88243863 88243877 chr7,88243863,88244230,+,L1MEd,LINE,L1,1794,2188,-4898,88242070,88249128 +4 + chr7 88259709 88259795 chr7,88259525,88259795,+,L2a,LINE,L2,3102,3426,0,88256424,88259795 +2 + chr7 88270920 88271199 chr7,88270920,88271199,-,L1MA5A,LINE,L1,-5,6292,6008,88270915,88277206 +6 - chr7 88271763 88271870 chr7,88271216,88271988,-,L1ME4b,LINE,L1,-3,889,74,88271213,88272061 -3 - chr7 88271216 88271988 chr7,88271216,88271988,-,L1ME4b,LINE,L1,-3,889,74,88271213,88272061 +6 - chr7 88272093 88272497 chr7,88272093,88272497,+,LTR16C,LTR,ERVL,90,489,0,88272004,88272497 -6 + chr7 88272526 88272659 chr7,88272526,88272659,+,MER5C1,DNA,hAT-Charlie,11,149,-114,88272516,88272773 -6 + chr7 88272660 88272756 chr7,88272660,88272756,+,Charlie10,DNA,hAT-Charlie,2731,2822,0,88269930,88272756 -6 + chr7 88272770 88272967 chr7,88272770,88272967,+,L3,LINE,CR1,3842,4045,-54,88268929,88273021 -6 + chr7 88272977 88273224 chr7,88272977,88273224,-,L1MA5A,LINE,L1,0,6297,6042,88272977,88279265 +6 - chr7 88273501 88273525 chr7,88273501,88273525,+,(GT)n,Simple_repeat,Simple_repeat,1,24,0,88273501,88273525 -6 + chr7 88283844 88283877 chr7,88283844,88283877,-,MamRTE1,LINE,RTE-BovB,-1325,2487,2453,88282519,88286329 -6 - chr7 88292300 88292458 chr7,88292300,88292458,+,MamRep4096,DNA,hAT-Tip100,6,162,-264,88292295,88292722 +5 + chr7 88710631 88710652 chr7,88710565,88710652,-,HAL1,LINE,L1,-583,1924,1840,88709982,88712491 -1 - chr7 88732707 88733034 chr7,88732164,88734603,-,L1MA3,LINE,L1,-5050,2515,12,88727114,88734614 -3 - chr7 88733565 88733654 chr7,88732164,88734603,-,L1MA3,LINE,L1,-5050,2515,12,88727114,88734614 -3 - chr7 88747313 88747339 chr7,88747313,88747680,-,L1MC4,LINE,L1,-23,8019,7625,88747290,88755304 -4 - chr7 89443983 89444057 chr7,89443983,89444203,+,MIR,SINE,MIR,11,228,-34,89443973,89444237 +4 + chr7 89469603 89469659 chr7,89469321,89469700,-,ERVL-E-int,LTR,ERVL,-1843,3824,3439,89467478,89473138 -3 - chr7 89474895 89474967 chr7,89474792,89474967,+,LTR16D,LTR,ERVL,481,651,0,89474312,89474967 +2 + chr7 89491635 89491668 chr7,89491496,89491668,+,MER103C,DNA,hAT-Charlie,110,287,-10,89491387,89491678 +2 + chr7 89494113 89494153 chr7,89494042,89494153,-,MIR,SINE,MIR,-62,200,92,89493980,89494244 -2 - chr7 89882353 89882555 chr7,89882268,89882743,-,MLT1F,LTR,ERVL-MaLR,-29,520,1,89882239,89882743 +5 - chr7 90122595 90122741 chr7,90122438,90122741,-,AluSz6,SINE,Alu,-10,302,1,90122428,90122741 +4 - chr7 90209358 90209454 chr7,90209358,90209454,+,MER103C,DNA,hAT-Charlie,90,197,-100,90209269,90209554 -6 + chr7 90209542 90209677 chr7,90209542,90209677,+,L2b,LINE,L2,3229,3373,-2,90206314,90209679 -6 + chr7 91311368 91311386 chr7,91311058,91311602,+,MLT1D,LTR,ERVL-MaLR,1,503,-2,91311058,91311604 +1 + chr7 91312539 91312562 chr7,91312539,91312688,-,MIRb,SINE,MIR,-79,189,11,91312460,91312698 -4 - chr7 91315973 91316030 chr7,91315867,91316062,-,MIR,SINE,MIR,-15,253,40,91315852,91316101 -3 - chr7 91466845 91466878 chr7,91466605,91466956,+,THE1B,LTR,ERVL-MaLR,2,364,0,91466604,91466956 +3 + chr7 91513811 91513841 chr7,91513811,91513975,+,MLT1J1,LTR,ERVL-MaLR,64,252,-192,91513748,91514167 +4 + chr7 91639133 91639243 chr7,91639133,91639553,+,L1MA4,LINE,L1,5874,6295,-5,91633260,91639558 -2 + chr7 92142542 92142734 chr7,92142542,92143888,-,LTR12C,LTR,ERV1,0,1579,3,92142542,92143890 -4 - chr7 92179325 92179418 chr7,92179325,92179418,-,MER5B,DNA,hAT-Charlie,-13,165,59,92179312,92179476 -6 - chr7 92200357 92200442 chr7,92200357,92200651,-,AluSx1,SINE,Alu,-15,297,1,92200342,92200651 +2 - chr7 92205698 92205750 chr7,92205503,92205750,+,AluSz,SINE,Alu,48,298,-14,92205456,92205764 -4 + chr7 92205925 92206857 chr7,92205925,92207380,+,L1MA4,LINE,L1,945,2470,-4379,92204981,92211759 -1 + chr7 92461319 92461410 chr7,92461138,92461486,+,MLT2F,LTR,ERVL,281,661,-2,92460858,92461488 +3 + chr7 92462958 92462978 chr7,92462595,92462978,+,MLT1A,LTR,ERVL-MaLR,1,374,0,92462595,92462978 +2 + chr7 92462978 92463026 chr7,92462978,92463373,+,L1MB4,LINE,L1,5733,6137,-43,92457246,92463416 +4 + chr7 92465102 92465131 chr7,92465065,92465131,-,MIR3,SINE,MIR,-39,169,104,92465026,92465234 -2 - chr7 92855684 92855769 chr7,92855593,92855769,-,MIR,SINE,MIR,0,262,56,92855593,92855824 -2 - chr7 93893294 93893601 chr7,93893294,93893602,+,AluJr,SINE,Alu,3,304,-8,93893292,93893610 +5 + chr7 93954056 93954174 chr7,93954056,93954174,-,Tigger13a,DNA,TcMar-Tigger,-364,407,289,93953692,93954462 +6 - chr7 93954436 93954457 chr7,93954436,93954457,+,(GTT)n,Simple_repeat,Simple_repeat,1,21,0,93954436,93954457 -6 + chr7 93955096 93955187 chr7,93955096,93955187,+,L2,LINE,L2,2540,2629,-790,93952557,93955977 -6 + chr7 93955574 93955608 chr7,93955574,93955608,+,(ACATGAA)n,Simple_repeat,Simple_repeat,1,36,0,93955574,93955608 -6 + chr7 93955960 93955977 chr7,93955960,93955977,-,MER5A,DNA,hAT-Charlie,-18,171,22,93955942,93955998 +6 - chr7 93955977 93956103 chr7,93955977,93956103,+,MER5B,DNA,hAT-Charlie,37,164,-14,93955941,93956117 -6 + chr7 93987229 93987272 chr7,93987229,93987765,-,LTR38,LTR,ERV1,-11,545,1,93987218,93987765 -4 - chr7 94000297 94000372 chr7,94000107,94000398,-,AluY,SINE,Alu,-15,296,15,94000092,94000412 -5 - chr7 94022833 94022907 chr7,94022613,94022990,+,THE1C,LTR,ERVL-MaLR,1,375,0,94022613,94022990 +1 + chr7 94061456 94061581 chr7,94061392,94061581,-,MIRc,SINE,MIR,-24,184,15,94061368,94061595 -2 - chr7 94064426 94064525 chr7,94064360,94064525,-,MIR3,SINE,MIR,-5,203,32,94064355,94064556 -2 - chr7 94064705 94064723 chr7,94064705,94064725,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,94064705,94064725 +5 + chr7 94076995 94077152 chr7,94076759,94077152,+,LTR16,LTR,ERVL,1,435,-3,94076759,94077155 -4 + chr7 95155015 95155042 chr7,95155015,95155042,+,(ATC)n,Simple_repeat,Simple_repeat,1,27,0,95155015,95155042 -6 + chr7 95155074 95155118 chr7,95155074,95155118,+,A-rich,Low_complexity,Low_complexity,1,45,0,95155074,95155118 -6 + chr7 95155144 95155168 chr7,95155144,95155168,-,LTR37-int,LTR,ERV1,-3897,163,140,95151247,95155307 +6 - chr7 95155168 95155487 chr7,95155168,95155487,-,AluJo,SINE,Alu,0,312,3,95155168,95155489 +6 - chr7 95155487 95155626 chr7,95155487,95155626,-,LTR37-int,LTR,ERV1,-3921,139,3,95151566,95155628 +6 - chr7 95155642 95155890 chr7,95155642,95155890,-,LTR37B,LTR,ERV1,-15,453,206,95155627,95156095 +6 - chr7 95155955 95156951 chr7,95155955,95157642,-,MER52A,LTR,ERV1,0,1755,2,95155955,95157643 +2 - chr7 95174947 95175011 chr7,95174882,95175011,-,MLT1F2,LTR,ERVL-MaLR,-9,551,417,95174873,95175427 +4 - chr7 95174980 95175089 chr7,95174980,95175237,-,MLT1F2,LTR,ERVL-MaLR,-288,272,1,95174692,95175237 +2 - chr7 95176493 95176531 chr7,95176131,95181172,+,L1PB1,LINE,L1,1393,6507,-360,95174739,95181532 -3 + chr7 95214185 95214332 chr7,95214121,95214682,-,MLT1F2,LTR,ERVL-MaLR,-15,545,1,95214106,95214682 +1 - chr7 95471835 95471956 chr7,95471766,95471956,-,MIR,SINE,MIR,0,262,63,95471766,95472018 -1 - chr7 95473919 95473998 chr7,95473919,95474031,+,MIR3,SINE,MIR,79,201,-7,95473841,95474038 +5 + chr7 95542411 95542730 chr7,95542411,95542730,-,AluSx1,SINE,Alu,0,312,1,95542411,95542730 -6 - chr7 95543217 95543337 chr7,95543217,95543337,+,LTR33,LTR,ERVL,44,165,-350,95543174,95543687 +6 + chr7 95543349 95543446 chr7,95543349,95543446,+,LTR33,LTR,ERVL,416,515,0,95542934,95543446 +6 + chr7 95544502 95544542 chr7,95544502,95544679,+,MIRb,SINE,MIR,8,189,-79,95544495,95544758 +5 + chr7 95606940 95606963 chr7,95606558,95606963,-,L1PA6,LINE,L1,-568,5586,5183,95605990,95612145 -2 - chr7 95606959 95607015 chr7,95606959,95607015,+,L1P2,LINE,L1,1292,1349,-4835,95605668,95611850 +6 + chr7 95613120 95613719 chr7,95613120,95616446,+,L1PA13,LINE,L1,1213,4664,-2251,95611908,95618697 +5 + chr7 96118717 96118773 chr7,96118717,96118773,+,(GGCA)n,Simple_repeat,Simple_repeat,1,56,0,96118717,96118773 +6 + chr7 96955234 96955308 chr7,96955234,96955308,-,MIRc,SINE,MIR,-63,205,132,96955171,96955439 +6 - chr7 96956141 96956273 chr7,96956141,96956273,-,MER94,DNA,hAT-Blackjack,0,134,1,96956141,96956273 +6 - chr7 96956689 96956743 chr7,96956689,96956743,+,L2b,LINE,L2,3311,3365,-10,96953379,96956753 -6 + chr7 96957207 96957310 chr7,96957207,96957310,+,L1MD2,LINE,L1,6243,6346,-13,96950965,96957323 -6 + chr7 96957427 96958287 chr7,96957427,96958287,-,L2a,LINE,L2,-1,3425,2394,96957426,96960680 +6 - chr7 96958287 96958554 chr7,96958287,96958554,+,AluSq,SINE,Alu,35,307,-6,96958253,96958560 -6 + chr7 96958554 96959171 chr7,96958554,96959171,-,L2a,LINE,L2,-1026,2393,1753,96957528,96960923 +6 - chr7 96959645 96959686 chr7,96959645,96959686,+,(CA)n,Simple_repeat,Simple_repeat,1,41,0,96959645,96959686 -6 + chr7 96959694 96959908 chr7,96959694,96959908,-,L1ME3G,LINE,L1,-129,795,556,96959565,96960463 +6 - chr7 96959913 96960235 chr7,96959913,96960235,-,L1ME4b,LINE,L1,-13,879,502,96959900,96960736 +6 - chr7 96960303 96960352 chr7,96960303,96960352,+,A-rich,Low_complexity,Low_complexity,1,49,0,96960303,96960352 -6 + chr7 96960393 96960690 chr7,96960393,96960690,+,AluSx1,SINE,Alu,1,304,-8,96960393,96960698 -6 + chr7 96960837 96960948 chr7,96960837,96960948,+,MIR1_Amn,SINE,MIR,63,187,-21,96960775,96960969 -6 + chr7 96961235 96961385 chr7,96961235,96961385,+,MIRb,SINE,MIR,2,146,-122,96961234,96961507 -6 + chr7 96961558 96961751 chr7,96961558,96961751,-,MIRc,SINE,MIR,-4,204,17,96961554,96961767 +6 - chr7 96965928 96966021 chr7,96965928,96966021,-,OldhAT1,DNA,hAT-Ac,-2648,200,106,96963280,96966126 +6 - chr7 96966793 96967073 chr7,96966793,96967073,-,AluJb,SINE,Alu,-13,299,1,96966780,96967073 +6 - chr7 96967244 96967338 chr7,96967244,96967338,+,L2b,LINE,L2,3278,3366,-9,96963967,96967347 -6 + chr7 96967627 96967743 chr7,96967627,96967743,-,MIR3,SINE,MIR,-86,122,14,96967541,96967756 +6 - chr7 96968063 96968100 chr7,96968063,96968100,+,L2c,LINE,L2,3281,3317,-70,96964783,96968170 -6 + chr7 96968069 96968132 chr7,96968069,96968132,+,L2b,LINE,L2,3259,3323,-52,96964811,96968184 -6 + chr7 96968493 96968694 chr7,96968493,96968694,-,MamTip3,DNA,hAT-Tip100,-32,468,252,96968461,96968945 +5 - chr7 96968723 96968905 chr7,96968723,96968905,-,MamTip3,DNA,hAT-Tip100,-317,183,1,96968406,96968905 +6 - chr7 96979316 96979591 chr7,96979316,96979617,+,AluSz,SINE,Alu,1,305,-7,96979316,96979624 -2 + chr7 97003562 97003600 chr7,97003562,97003600,+,A-rich,Low_complexity,Low_complexity,1,40,0,97003562,97003600 -6 + chr7 98323398 98323425 chr7,98323398,98323425,+,A-rich,Low_complexity,Low_complexity,1,27,0,98323398,98323425 +6 + chr7 99014144 99014266 chr7,99014144,99014266,-,MIRb,SINE,MIR,-115,153,29,99014029,99014294 -6 - chr7 99030885 99030983 chr7,99030874,99030983,-,AluJr,SINE,Alu,-187,125,5,99030687,99030987 -2 - chr7 99032951 99032974 chr7,99032951,99032974,+,(A)n,Simple_repeat,Simple_repeat,1,23,0,99032951,99032974 +6 + chr7 99036194 99036477 chr7,99036194,99036497,+,AluJb,SINE,Alu,2,302,-10,99036193,99036507 +5 + chr7 99048105 99048240 chr7,99048105,99048398,+,AluSx1,SINE,Alu,1,292,-20,99048105,99048418 +5 + chr7 99605464 99605559 chr7,99605285,99605592,-,AluJo,SINE,Alu,-31,281,2,99605254,99605593 -5 - chr7 99944121 99944188 chr7,99944121,99944772,-,LTR9D,LTR,ERV1,0,645,1,99944121,99944772 -4 - chr7 100115214 100115291 chr7,100115160,100115291,-,AluJo,SINE,Alu,-205,107,1,100114955,100115291 +5 - chr7 100115379 100115652 chr7,100115379,100115687,+,AluSz,SINE,Alu,1,310,-2,100115379,100115689 -2 + chr7 100140172 100140288 chr7,100139978,100140288,-,AluSz,SINE,Alu,-12,300,2,100139966,100140289 -2 - chr7 100436204 100436300 chr7,100436190,100436300,+,G-rich,Low_complexity,Low_complexity,1,118,0,100436190,100436300 +1 + chr7 100438452 100438504 chr7,100438452,100438516,+,L1MC,LINE,L1,4030,4094,-2046,100434423,100440562 +5 + chr7 100509717 100509733 chr7,100509277,100509733,-,MLT1F,LTR,ERVL-MaLR,-3,545,118,100509274,100509850 -1 - chr7 100509733 100509801 chr7,100509733,100509878,+,AluSz,SINE,Alu,2,133,-179,100509732,100510057 +4 + chr7 100516593 100516685 chr7,100516574,100516685,-,FLAM_C,SINE,Alu,-10,133,1,100516564,100516685 -2 - chr7 100519376 100519498 chr7,100519344,100519655,-,AluSp,SINE,Alu,-2,311,1,100519342,100519655 -3 - chr7 100519884 100519926 chr7,100519722,100519998,-,AluJr,SINE,Alu,-30,282,1,100519692,100519998 -5 - chr7 100573376 100573424 chr7,100573376,100573424,+,G-rich,Low_complexity,Low_complexity,1,49,0,100573376,100573424 -6 + chr7 100574778 100574810 chr7,100574778,100574810,+,G-rich,Low_complexity,Low_complexity,1,33,0,100574778,100574810 -6 + chr7 100577301 100577344 chr7,100577301,100577344,+,(GCT)n,Simple_repeat,Simple_repeat,1,44,0,100577301,100577344 -6 + chr7 100593048 100593074 chr7,100593048,100593213,+,Charlie15a,DNA,hAT-Charlie,38,194,-30,100593011,100593243 -2 + chr7 100602369 100602402 chr7,100602369,100602402,+,(CTG)n,Simple_repeat,Simple_repeat,1,34,0,100602369,100602402 -6 + chr7 100603021 100603054 chr7,100603021,100603054,+,(CTCC)n,Simple_repeat,Simple_repeat,1,33,0,100603021,100603054 -6 + chr7 100964061 100964096 chr7,100964061,100964096,+,(AG)n,Simple_repeat,Simple_repeat,1,35,0,100964061,100964096 -6 + chr7 100964154 100964266 chr7,100964154,100964464,+,AluJr,SINE,Alu,1,289,-23,100964154,100964487 -2 + chr7 100964335 100964456 chr7,100964154,100964464,+,AluJr,SINE,Alu,1,289,-23,100964154,100964487 -3 + chr7 100966448 100966481 chr7,100966448,100966481,+,(GGCGCT)n,Simple_repeat,Simple_repeat,1,52,-34,100966448,100966515 -6 + chr7 100966481 100966509 chr7,100966481,100966509,+,(GCT)n,Simple_repeat,Simple_repeat,1,28,0,100966481,100966509 -6 + chr7 100966509 100966528 chr7,100966509,100966528,+,(GGCGCT)n,Simple_repeat,Simple_repeat,53,86,0,100966457,100966528 -6 + chr7 100966551 100966595 chr7,100966551,100966595,+,G-rich,Low_complexity,Low_complexity,1,45,0,100966551,100966595 -6 + chr7 100967341 100967417 chr7,100967323,100967477,+,MIRc,SINE,MIR,32,199,-69,100967292,100967546 -3 + chr7 101014320 101014439 chr7,101014273,101014480,-,MSTD,LTR,ERVL-MaLR,0,396,184,101014273,101014663 +5 - chr7 101015246 101015290 chr7,101015246,101015308,+,MIRb,SINE,MIR,119,184,-84,101015128,101015392 -2 + chr7 101094047 101094146 chr7,101093923,101094146,+,L1ME4c,LINE,L1,289,536,-294,101093635,101094440 +1 + chr7 101094352 101094391 chr7,101094352,101094391,+,(T)n,Simple_repeat,Simple_repeat,1,39,0,101094352,101094391 +6 + chr7 101094829 101094929 chr7,101094829,101094929,+,L2b,LINE,L2,3271,3371,-4,101091559,101094933 +6 + chr7 101095066 101095084 chr7,101095066,101095084,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,101095066,101095084 +6 + chr7 101095093 101095373 chr7,101095093,101095373,+,AluJr,SINE,Alu,2,282,-30,101095092,101095403 +6 + chr7 101095922 101096214 chr7,101095922,101096214,+,AluSx,SINE,Alu,18,308,-4,101095905,101096218 +6 + chr7 101096410 101096644 chr7,101096410,101096644,+,MIRc,SINE,MIR,8,259,-9,101096403,101096653 +6 + chr7 101299646 101299866 chr7,101299646,101301210,+,L1M2,LINE,L1,95,2372,-4837,101299552,101306047 +4 + chr7 101300769 101301210 chr7,101299646,101301210,+,L1M2,LINE,L1,95,2372,-4837,101299552,101306047 +2 + chr7 101308346 101308548 chr7,101308328,101309221,+,L1M2,LINE,L1,2,1495,-5621,101308327,101314842 +1 + chr7 101310484 101310924 chr7,101310226,101310924,+,L1M2,LINE,L1,1496,2291,-4825,101308731,101315749 +2 + chr7 101562933 101563073 chr7,101562933,101563073,-,MIR3,SINE,MIR,-55,153,15,101562878,101563087 +6 - chr7 101565535 101565610 chr7,101565535,101565610,+,MIRb,SINE,MIR,90,174,-94,101565446,101565704 -6 + chr7 101565678 101565737 chr7,101565678,101565737,+,MLT2B4,LTR,ERVL,7,65,-491,101565672,101566228 -6 + chr7 101565859 101566032 chr7,101565859,101566032,-,L2b,LINE,L2,-173,3202,3023,101565686,101569054 +6 - chr7 101566489 101566839 chr7,101566489,101566839,-,MLT1A,LTR,ERVL-MaLR,-19,355,1,101566470,101566839 +6 - chr7 101567467 101567480 chr7,101567467,101567549,+,Tigger3d,DNA,TcMar-Tigger,114,193,-128,101567354,101567677 -2 + chr7 101568962 101569006 chr7,101568962,101569034,-,MLT1J2,LTR,ERVL-MaLR,-304,144,74,101568658,101569107 +1 - chr7 101960352 101960651 chr7,101960352,101960651,+,AluJb,SINE,Alu,1,293,-19,101960352,101960670 +6 + chr7 101961224 101961390 chr7,101961224,101961390,+,MIRc,SINE,MIR,84,268,0,101961141,101961390 +6 + chr7 101961565 101961598 chr7,101961565,101961598,+,L1ME4a,LINE,L1,5798,5830,-294,101955768,101961892 +6 + chr7 101961598 101961894 chr7,101961598,101961894,+,AluSx1,SINE,Alu,1,301,-11,101961598,101961905 +5 + chr7 102153367 102154021 chr7,102153367,102154021,+,L1MEh,LINE,L1,397,1012,-1223,102152971,102155244 -6 + chr7 102154021 102154056 chr7,102154021,102154146,+,FLAM_C,SINE,Alu,2,127,-16,102154020,102154162 -2 + chr7 102154365 102154463 chr7,102154330,102154596,+,AluJb,SINE,Alu,4,258,-54,102154327,102154650 -1 + chr7 102426825 102426930 chr7,102426825,102426930,+,MIRc,SINE,MIR,13,119,-149,102426813,102427079 -6 + chr7 102430065 102430134 chr7,102430065,102430298,+,AluSq2,SINE,Alu,50,291,-22,102430016,102430320 -2 + chr7 102525182 102525261 chr7,102525182,102525325,-,L2c,LINE,L2,-206,3181,3031,102524976,102528355 +2 - chr7 102973522 102973616 chr7,102973209,102973616,+,MER48,LTR,ERV1,1,407,0,102973209,102973616 +1 + chr7 102973616 102973771 chr7,102973616,102974108,+,HERVH48-int,LTR,ERV1,1,484,-6170,102973616,102980278 +4 + chr7 102978381 102978520 chr7,102978321,102978728,+,MER48,LTR,ERV1,1,407,0,102978321,102978728 +3 + chr7 102988033 102988187 chr7,102987724,102988187,-,L2,LINE,L2,-836,2583,2127,102986888,102990313 -2 - chr7 102988378 102988675 chr7,102988378,102988675,+,LTR101_Mam,LTR,ERVL,1,314,-515,102988378,102989190 +6 + chr7 102988744 102988856 chr7,102988744,102988923,+,LTR101_Mam,LTR,ERVL,490,683,-146,102988255,102989069 +5 + chr7 103162397 103162472 chr7,103162397,103162472,+,L2a,LINE,L2,3349,3426,0,103159049,103162472 -6 + chr7 103504465 103504524 chr7,103504465,103510637,+,L1PA7,LINE,L1,14,6333,-6,103504452,103510643 +4 + chr7 103513702 103513976 chr7,103513702,103513976,+,L1ME4a,LINE,L1,5806,6119,-5,103507897,103513981 +6 + chr7 104744050 104744123 chr7,104743832,104744123,-,AluJb,SINE,Alu,-11,301,29,104743821,104744151 +4 - chr7 104752715 104752803 chr7,104748901,104752819,-,HERVK-int,LTR,ERVK,-3617,3919,4,104745284,104752822 +3 - chr7 104757609 104757748 chr7,104757029,104758365,+,L1PA16,LINE,L1,4813,6157,-9,104752217,104758374 -1 + chr7 104759749 104759822 chr7,104759749,104759985,-,MIRb,SINE,MIR,-6,262,3,104759743,104759987 +2 - chr7 104785212 104785270 chr7,104785156,104785270,+,L2,LINE,L2,2154,2264,-1155,104783003,104786425 -5 + chr7 104785314 104785358 chr7,104785314,104785418,+,L2a,LINE,L2,3315,3426,0,104782000,104785418 -2 + chr7 104796651 104796949 chr7,104796651,104797140,-,MLT1L,LTR,ERVL-MaLR,-2,608,89,104796649,104797228 +2 - chr7 104802839 104802963 chr7,104802722,104803154,+,L2,LINE,L2,2596,3056,-363,104800127,104803517 -3 + chr7 104804006 104804107 chr7,104804006,104804386,-,MLT1K,LTR,ERVL-MaLR,-173,422,8,104803833,104804393 +1 - chr7 104917625 104917755 chr7,104917625,104917755,-,MIRc,SINE,MIR,-25,243,97,104917600,104917851 +6 - chr7 104920385 104920425 chr7,104920215,104920842,+,L1MB4,LINE,L1,5606,6164,-7,104914610,104920849 -3 + chr7 104926477 104926630 chr7,104926477,104926669,-,MIR,SINE,MIR,-64,198,7,104926413,104926675 +1 - chr7 104941063 104941430 chr7,104939974,104941430,+,LTR12C,LTR,ERV1,2,1579,0,104939973,104941430 +1 + chr7 104950315 104950341 chr7,104950103,104950341,-,MLT1B,LTR,ERVL-MaLR,0,390,153,104950103,104950493 +5 - chr7 104950341 104950532 chr7,104950341,104950598,+,AluSc,SINE,Alu,15,299,-10,104950327,104950608 -2 + chr7 104953790 104953815 chr7,104953790,104953815,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,27,0,104953790,104953815 -6 + chr7 104961984 104962120 chr7,104961828,104962120,-,LTR67B,LTR,ERVL,-38,582,315,104961790,104962434 -5 - chr7 104962160 104962328 chr7,104962160,104962328,-,LTR67B,LTR,ERVL,-419,201,18,104961741,104962345 -6 - chr7 104982154 104982205 chr7,104982154,104982205,+,(ATACAT)n,Simple_repeat,Simple_repeat,1,52,0,104982154,104982205 -6 + chr7 105013728 105013785 chr7,105013728,105013785,+,G-rich,Low_complexity,Low_complexity,1,57,0,105013728,105013785 -6 + chr7 105014151 105014196 chr7,105014151,105014196,+,(GCC)n,Simple_repeat,Simple_repeat,1,45,0,105014151,105014196 -6 + chr7 105102970 105103069 chr7,105102970,105103069,-,MIRc,SINE,MIR,-154,114,10,105102816,105103078 +6 - chr7 105103409 105103638 chr7,105103409,105103638,-,MIR,SINE,MIR,-23,239,13,105103386,105103650 +6 - chr7 105103740 105103771 chr7,105103740,105103771,+,(TG)n,Simple_repeat,Simple_repeat,1,31,0,105103740,105103771 -6 + chr7 105103770 105103802 chr7,105103770,105103802,+,(TA)n,Simple_repeat,Simple_repeat,1,32,0,105103770,105103802 -6 + chr7 105103816 105104124 chr7,105103816,105104124,-,AluSx3,SINE,Alu,-1,310,1,105103815,105104124 +6 - chr7 105104406 105104695 chr7,105104406,105104695,+,AluJo,SINE,Alu,2,289,-23,105104405,105104718 -6 + chr7 105104714 105104757 chr7,105104714,105104757,-,MER5B,DNA,hAT-Charlie,-135,43,1,105104579,105104757 +6 - chr7 105104886 105105174 chr7,105104886,105105174,+,AluJr,SINE,Alu,1,292,-20,105104886,105105194 -6 + chr7 105304277 105304390 chr7,105304272,105304390,+,MARNA,DNA,TcMar-Mariner,265,382,-204,105304008,105304594 +1 + chr7 105306252 105306317 chr7,105306092,105306317,+,MamTip1,DNA,hAT-Tip100,33,267,0,105306060,105306317 +2 + chr7 105571083 105571144 chr7,105571037,105571144,-,L1MC5,LINE,L1,-1,9303,9185,105571036,105580328 -1 - chr7 105571154 105572046 chr7,105571154,105572046,+,HSMAR2,DNA,TcMar-Mariner,378,1299,-3,105570777,105572049 +6 + chr7 105572054 105572707 chr7,105572054,105572707,-,L1MA8,LINE,L1,-129,6162,5481,105571925,105578187 -6 - chr7 105572707 105572827 chr7,105572707,105572827,-,FLAM_A,SINE,Alu,-22,120,1,105572685,105572827 -6 - chr7 105572827 105573125 chr7,105572827,105573125,-,L1MA8,LINE,L1,-811,5480,5174,105572016,105578298 -6 - chr7 105573118 105573189 chr7,105573118,105573189,-,HAL1M8,LINE,L1,-4,2987,2913,105573114,105576101 -6 - chr7 106035798 106035867 chr7,106035419,106035867,-,MER51A,LTR,ERV1,0,634,195,106035419,106036061 -1 - chr7 106036400 106036431 chr7,106036400,106036502,-,L2a,LINE,L2,-4,3422,3305,106036396,106039806 -5 - chr7 106286193 106286223 chr7,106286193,106286223,+,(TGG)n,Simple_repeat,Simple_repeat,1,30,0,106286193,106286223 +6 + chr7 106473872 106473982 chr7,106473844,106474729,+,L1MEc,LINE,L1,1685,2618,-3701,106472160,106478430 -5 + chr7 106489743 106490064 chr7,106489743,106490137,-,MLT1H,LTR,ERVL-MaLR,-13,536,85,106489730,106490221 +2 - chr7 106491010 106491127 chr7,106490925,106491127,-,THE1B,LTR,ERVL-MaLR,0,364,171,106490925,106491297 +4 - chr7 106504709 106504839 chr7,106504625,106504989,-,THE1B,LTR,ERVL-MaLR,0,364,1,106504625,106504989 +1 - chr7 106520729 106520819 chr7,106520719,106521036,+,AluJr,SINE,Alu,14,301,-11,106520706,106521047 -3 + chr7 106570947 106571054 chr7,106570836,106571054,-,L4_A_Mam,LINE,RTE-X,-2433,2557,2341,106568403,106573394 +5 - chr7 106598754 106598802 chr7,106598614,106598802,-,MLT1J,LTR,ERVL-MaLR,0,512,320,106598614,106599121 +4 - chr7 106610397 106610457 chr7,106610278,106610457,-,MER112,DNA,hAT-Charlie,0,261,72,106610278,106610528 +4 - chr7 106615755 106615771 chr7,106615755,106615825,-,MIRc,SINE,MIR,-72,196,127,106615683,106615951 +2 - chr7 106639813 106639908 chr7,106639813,106640434,+,MER41B,LTR,ERV1,1,634,0,106639813,106640434 -1 + chr7 106760586 106760681 chr7,106760586,106760777,+,MER63A,DNA,hAT-Blackjack,6,210,0,106760581,106760777 -2 + chr7 106770152 106770207 chr7,106769986,106770883,+,L3,LINE,CR1,2376,3349,-750,106767611,106771633 -1 + chr7 106775011 106775200 chr7,106774626,106775270,-,MER41B,LTR,ERV1,0,634,1,106774626,106775270 -1 - chr7 106777542 106777732 chr7,106777389,106777800,+,MLT1C,LTR,ERVL-MaLR,1,460,-7,106777389,106777807 +1 + chr7 106779995 106780190 chr7,106779758,106780190,-,MER115,DNA,hAT-Tip100,-2,691,207,106779756,106780396 -2 - chr7 106780190 106780633 chr7,106780190,106780633,+,MLT2B1,LTR,ERVL,1,472,-48,106780190,106780681 +6 + chr7 106780644 106780818 chr7,106780644,106780818,-,MER115,DNA,hAT-Tip100,-518,175,2,106780126,106780819 -6 - chr7 106780899 106781028 chr7,106780899,106781028,+,MER5A,DNA,hAT-Charlie,61,188,-1,106780839,106781029 +5 + chr7 106781615 106781708 chr7,106781615,106781708,-,5S,rRNA,rRNA,-31,90,8,106781584,106781715 -6 - chr7 106781846 106782150 chr7,106781846,106782150,-,MLT2B1,LTR,ERVL,0,520,163,106781846,106782312 -6 - chr7 106782210 106782350 chr7,106782210,106782350,+,L2b,LINE,L2,3222,3349,-38,106778989,106782388 +6 + chr7 106782661 106782852 chr7,106782661,106782957,-,Charlie2b,DNA,hAT-Charlie,-1,2781,2478,106782660,106785434 -5 - chr7 107077238 107077347 chr7,107077238,107077347,-,L2c,LINE,L2,-5,3382,3273,107077233,107080619 +5 - chr7 107077767 107077909 chr7,107077706,107077909,+,MIRb,SINE,MIR,23,212,-56,107077684,107077965 -4 + chr7 107077919 107078233 chr7,107077919,107078233,+,AluSx,SINE,Alu,1,312,0,107077919,107078233 -6 + chr7 107133604 107133713 chr7,107133588,107133713,+,MamRTE1,LINE,RTE-BovB,121,242,-3570,107133468,107137283 -4 + chr7 107193248 107193300 chr7,107193248,107193424,-,MIRb,SINE,MIR,-68,200,15,107193180,107193438 +1 - chr7 107653976 107654091 chr7,107653455,107654091,+,L1MC3,LINE,L1,6545,7188,-597,107646911,107654688 -5 + chr7 107654091 107654233 chr7,107654091,107654251,+,AluJb,SINE,Alu,137,297,-15,107653955,107654266 -2 + chr7 107655096 107655183 chr7,107655008,107655183,+,L2a,LINE,L2,2193,2386,-1033,107652816,107656216 -4 + chr7 107655173 107655312 chr7,107655173,107655607,+,L2a,LINE,L2,2979,3426,0,107652195,107655607 -2 + chr7 107656827 107656979 chr7,107656827,107656979,+,L1ME4a,LINE,L1,5942,6111,-13,107650886,107656992 -6 + chr7 107657299 107657372 chr7,107657299,107657372,-,AluJb,SINE,Alu,-237,75,1,107657062,107657372 +6 - chr7 107657425 107657449 chr7,107657425,107657449,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,107657425,107657449 -6 + chr7 107657579 107657686 chr7,107657579,107657686,+,FLAM_A,SINE,Alu,1,131,-11,107657579,107657697 -6 + chr7 107657714 107657750 chr7,107657714,107657750,+,(ATATT)n,Simple_repeat,Simple_repeat,1,39,0,107657714,107657750 -6 + chr7 107657754 107657871 chr7,107657754,107657871,-,MER104,DNA,TcMar-Tc2,-46,135,4,107657708,107657874 +6 - chr7 107657890 107658009 chr7,107657890,107658009,+,L2c,LINE,L2,3277,3426,0,107654614,107658009 -6 + chr7 107659090 107659316 chr7,107659090,107659316,-,L2c,LINE,L2,-70,3317,3099,107659020,107662414 +6 - chr7 107659521 107659656 chr7,107659521,107659656,-,MER20,DNA,hAT-Charlie,-72,147,1,107659449,107659656 +6 - chr7 107659761 107659871 chr7,107659761,107659871,-,Charlie4z,DNA,hAT-Charlie,-1,166,49,107659760,107659919 +6 - chr7 107660073 107660151 chr7,107660073,107660151,+,X6A_LINE,LINE,CR1,546,618,-462,107659528,107660613 -6 + chr7 107742817 107742966 chr7,107742760,107742966,-,MIR1_Amn,SINE,MIR,-55,213,1,107742705,107742966 +5 - chr7 107942116 107942289 chr7,107942001,107942289,-,AluSc,SINE,Alu,-17,292,1,107941984,107942289 -1 - chr7 107942505 107942722 chr7,107942505,107942722,+,MIR,SINE,MIR,3,249,-13,107942503,107942735 +6 + chr7 108601433 108601578 chr7,108600827,108601592,+,LTR82B,LTR,ERVL,3,830,0,108600825,108601592 +3 + chr7 108613972 108614143 chr7,108613972,108614143,-,MER5A,DNA,hAT-Charlie,-14,175,1,108613958,108614143 -6 - chr7 108900105 108900221 chr7,108899932,108900221,-,AluY,SINE,Alu,-21,290,2,108899911,108900222 +5 - chr7 108900221 108900363 chr7,108900221,108900363,-,MLT1B,LTR,ERVL-MaLR,-256,134,1,108899965,108900363 +6 - chr7 108900368 108900745 chr7,108900368,108900745,+,MER67C,LTR,ERV1,1,402,-309,108900368,108901054 -6 + chr7 108900819 108900929 chr7,108900819,108900929,-,AluSx3,SINE,Alu,-8,303,192,108900811,108901120 +6 - chr7 108900977 108901022 chr7,108900977,108901022,+,MER67C,LTR,ERV1,448,492,-22,108900530,108901044 -6 + chr7 108901252 108901891 chr7,108901252,108901891,-,L1MEd,LINE,L1,-5359,1727,1062,108895893,108902952 +6 - chr7 108901921 108902036 chr7,108901921,108902036,-,LTR33A,LTR,ERVL,0,520,390,108901921,108902425 +6 - chr7 108902053 108902217 chr7,108902053,108902217,-,L1MEd,LINE,L1,-6572,514,345,108895481,108902561 +6 - chr7 108902454 108902564 chr7,108902454,108902564,-,MLT1H2,LTR,ERVL-MaLR,-314,175,65,108902140,108902628 +6 - chr7 108903558 108903666 chr7,108903558,108903666,-,MLT1J1,LTR,ERVL-MaLR,-237,207,96,108903321,108903761 +6 - chr7 108903741 108903985 chr7,108903741,108903985,+,MIR,SINE,MIR,21,262,0,108903721,108903985 -6 + chr7 108903995 108904023 chr7,108903995,108904023,+,(TAT)n,Simple_repeat,Simple_repeat,1,29,0,108903995,108904023 -6 + chr7 108904629 108904994 chr7,108904629,108904994,+,L4_B_Mam,LINE,RTE-X,4399,4817,-124,108900231,108905118 -6 + chr7 108952412 108952666 chr7,108952269,108952712,+,MLT1C,LTR,ERVL-MaLR,1,467,0,108952269,108952712 +5 + chr7 109565251 109565332 chr7,109565232,109565394,+,MIRc,SINE,MIR,38,203,-65,109565195,109565459 -3 + chr7 109597041 109597166 chr7,109593521,109597186,-,HERVH-int,LTR,ERV1,-3720,3993,1,109589801,109597186 +1 - chr7 110432239 110432310 chr7,110432029,110432366,+,AluSz6,SINE,Alu,1,312,0,110432029,110432366 -5 + chr7 110511067 110511114 chr7,110511067,110511527,-,MLT1E2,LTR,ERVL-MaLR,-137,490,24,110510930,110511550 +2 - chr7 110525496 110525561 chr7,110525496,110525595,-,MIR3,SINE,MIR,-48,160,62,110525448,110525656 +2 - chr7 110725761 110725825 chr7,110725761,110725849,-,L2b,LINE,L2,-193,3182,3096,110725568,110728944 +1 - chr7 111820183 111820230 chr7,111820183,111820230,+,(AAGAGC)n,Simple_repeat,Simple_repeat,1,51,0,111820183,111820230 +6 + chr7 111821502 111821773 chr7,111821502,111821782,+,L2,LINE,L2,2125,2455,-964,111819378,111822746 +5 + chr7 112328189 112328339 chr7,112327999,112328339,-,L1ME3E,LINE,L1,-7,6235,5867,112327992,112334205 +5 - chr7 112350464 112350541 chr7,112350431,112350548,-,MIRc,SINE,MIR,-63,205,93,112350368,112350640 +1 - chr7 112399208 112399228 chr7,112399208,112399290,-,MLT1K,LTR,ERVL-MaLR,-495,100,14,112398713,112399303 +2 - chr7 112409509 112409623 chr7,112409478,112409694,-,LTR78B,LTR,ERV1,-620,676,455,112408858,112410148 +1 - chr7 112635279 112635366 chr7,112635059,112635782,+,L1ME4c,LINE,L1,38,808,-22,112635022,112635804 +3 + chr7 112699330 112699424 chr7,112699308,112699424,-,AluSx3,SINE,Alu,-12,299,184,112699296,112699607 -2 - chr7 112956597 112956681 chr7,112956597,112956681,+,MLT1M,LTR,ERVL-MaLR,81,169,-503,112956517,112957184 -6 + chr7 112973605 112973672 chr7,112973281,112973753,+,MLT2B1,LTR,ERVL,1,487,-33,112973281,112973786 -5 + chr7 112981023 112981161 chr7,112981023,112981808,+,L1PA5,LINE,L1,5361,6147,-7,112975663,112981815 -2 + chr7 112995568 112995634 chr7,112995411,112995725,+,L2,LINE,L2,2613,2917,-502,112992799,112996227 -1 + chr7 113075144 113075194 chr7,113075144,113075194,+,L2b,LINE,L2,3317,3366,-9,113071828,113075203 -6 + chr7 113075757 113075818 chr7,113075757,113075818,-,MIR3,SINE,MIR,-52,156,94,113075705,113075911 +6 - chr7 113075988 113076089 chr7,113075988,113076089,+,L2c,LINE,L2,3193,3304,-83,113072796,113076172 -6 + chr7 113076461 113076798 chr7,113076461,113076798,+,L3b,LINE,CR1,4844,5221,-11,113071618,113076809 -6 + chr7 113076912 113076953 chr7,113076912,113076953,+,(AAACA)n,Simple_repeat,Simple_repeat,1,41,0,113076912,113076953 -6 + chr7 113076978 113077045 chr7,113076978,113077045,-,MIR,SINE,MIR,0,262,195,113076978,113077239 +6 - chr7 113077045 113077181 chr7,113077045,113077214,+,MIR,SINE,MIR,81,258,-4,113076965,113077218 -1 + chr7 113117711 113117766 chr7,113117711,113117766,-,MIR3,SINE,MIR,-36,172,119,113117675,113117884 +6 - chr7 113118210 113118238 chr7,113118210,113118238,+,(ATT)n,Simple_repeat,Simple_repeat,1,29,0,113118210,113118238 -6 + chr7 113145016 113145147 chr7,113144958,113145147,+,MamRTE1,LINE,RTE-BovB,3367,3559,-253,113141592,113145400 +1 + chr7 115078958 115079109 chr7,115078817,115079186,+,MSTD,LTR,ERVL-MaLR,1,396,0,115078817,115079186 +1 + chr7 115118226 115118621 chr7,115118226,115118621,+,L2a,LINE,L2,3021,3418,-8,115115206,115118629 +6 + chr7 115118694 115118718 chr7,115118694,115118718,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,115118694,115118718 +6 + chr7 115118935 115119056 chr7,115118931,115119261,+,MER1B,DNA,hAT-Charlie,1,334,-5,115118931,115119266 +3 + chr7 115125443 115125921 chr7,115125400,115125921,+,L2a,LINE,L2,2938,3426,0,115122463,115125921 +5 + chr7 115126015 115126148 chr7,115126015,115126148,+,MIRb,SINE,MIR,138,266,-2,115125878,115126150 +6 + chr7 115126471 115126525 chr7,115126342,115126525,+,L2a,LINE,L2,3215,3409,-17,115123128,115126542 -4 + chr7 115155066 115155189 chr7,115154902,115155189,-,AluJb,SINE,Alu,-18,294,1,115154884,115155189 +4 - chr7 115647461 115647908 chr7,115647011,115647908,+,L1ME2,LINE,L1,5405,6271,-66,115641607,115647974 -5 + chr7 115680120 115680148 chr7,115680120,115680148,+,(TCACT)n,Simple_repeat,Simple_repeat,1,28,0,115680120,115680148 -6 + chr7 115682578 115682618 chr7,115682578,115682690,-,L2b,LINE,L2,-2,3373,3257,115682576,115685946 +1 - chr7 115789729 115790263 chr7,115789220,115790263,-,LTR12D,LTR,ERV1,0,1254,1,115789220,115790263 -1 - chr7 116209433 116209462 chr7,116209433,116209462,+,(TTTG)n,Simple_repeat,Simple_repeat,1,30,0,116209433,116209462 -6 + chr7 116209627 116209736 chr7,116209627,116209736,+,MIR3,SINE,MIR,66,181,-27,116209562,116209763 -6 + chr7 116210130 116210158 chr7,116210130,116210158,+,(TC)n,Simple_repeat,Simple_repeat,1,29,0,116210130,116210158 -6 + chr7 116210744 116210797 chr7,116210744,116210797,+,(GCGCGCG)n,Simple_repeat,Simple_repeat,1,54,0,116210744,116210797 -6 + chr7 116237929 116238039 chr7,116237642,116238039,-,MLT1B,LTR,ERVL-MaLR,0,467,1,116237642,116238039 +5 - chr7 116238112 116238297 chr7,116238112,116238297,-,LTR33,LTR,ERVL,-305,210,11,116237807,116238307 +5 - chr7 116239015 116239249 chr7,116238900,116239327,-,MLT1E2,LTR,ERVL-MaLR,-70,557,138,116238830,116239464 +1 - chr7 116243842 116243936 chr7,116243762,116244131,-,THE1C,LTR,ERVL-MaLR,0,375,1,116243762,116244131 +3 - chr7 116275662 116275880 chr7,116275662,116275880,-,L2,LINE,L2,-844,2575,2331,116274818,116278210 +6 - chr7 116275896 116277353 chr7,116275896,116277353,-,L1PA14,LINE,L1,-2684,3989,2487,116273212,116279839 +5 - chr7 116277354 116277403 chr7,116277354,116277403,-,L1PA14,LINE,L1,-4164,2525,2477,116273190,116279879 +6 - chr7 116277390 116277432 chr7,116277390,116277616,+,L1PA15,LINE,L1,5074,5309,-837,116272317,116278453 -2 + chr7 116284322 116284406 chr7,116284322,116284478,+,MIR3,SINE,MIR,49,205,-3,116284274,116284481 -2 + chr7 116286618 116286664 chr7,116286478,116286828,-,HAL1b,LINE,L1,-1968,453,86,116284510,116286913 +1 - chr7 116286699 116286734 chr7,116286478,116286828,-,HAL1b,LINE,L1,-1968,453,86,116284510,116286913 +1 - chr7 116327832 116327896 chr7,116327809,116328061,-,MIRb,SINE,MIR,0,268,20,116327809,116328080 +1 - chr7 116482813 116482903 chr7,116482762,116483086,+,LTR33,LTR,ERVL,4,390,-125,116482759,116483211 -3 + chr7 116499354 116499371 chr7,116499174,116499371,-,MIRb,SINE,MIR,-31,237,30,116499143,116499400 +4 - chr7 116551836 116551969 chr7,116551637,116552199,-,MLT1F2,LTR,ERVL-MaLR,-17,543,1,116551620,116552199 +1 - chr7 116563604 116563820 chr7,116563604,116563820,+,L1ME4a,LINE,L1,5698,5884,-240,116557907,116564060 -6 + chr7 116563886 116564088 chr7,116563886,116564088,-,MIRb,SINE,MIR,-48,220,1,116563838,116564088 +6 - chr7 116600791 116600934 chr7,116600664,116600947,+,MLT2D,LTR,ERVL,86,359,-55,116600579,116601002 -3 + chr7 116952625 116952652 chr7,116952625,116952652,+,(CAAAA)n,Simple_repeat,Simple_repeat,1,28,0,116952625,116952652 -6 + chr7 116952980 116953196 chr7,116952980,116953196,+,MIR,SINE,MIR,8,258,-4,116952973,116953200 -6 + chr7 116953369 116953474 chr7,116953369,116953474,+,(CGGCCG)n,Simple_repeat,Simple_repeat,1,111,0,116953369,116953474 -6 + chr7 116958634 116958685 chr7,116958634,116959333,-,Tigger1,DNA,TcMar-Tigger,0,2418,1692,116958634,116961024 -4 - chr7 116959153 116959333 chr7,116958634,116959333,-,Tigger1,DNA,TcMar-Tigger,0,2418,1692,116958634,116961024 -2 - chr7 116959340 116959418 chr7,116959340,116959418,+,(TATG)n,Simple_repeat,Simple_repeat,1,82,0,116959340,116959418 +6 + chr7 116968399 116968505 chr7,116968376,116968505,-,FLAM_A,SINE,Alu,-12,130,1,116968364,116968505 -2 - chr7 117098613 117098638 chr7,117098227,117098638,+,L2c,LINE,L2,2963,3386,-1,117095265,117098639 +2 + chr7 117112305 117112511 chr7,117112305,117112511,-,MIRb,SINE,MIR,-13,255,44,117112292,117112554 +6 - chr7 117144167 117144253 chr7,117143924,117144354,-,Charlie1b,DNA,hAT-Charlie,-5,518,36,117143919,117144389 +3 - chr7 117145365 117145607 chr7,117145320,117145760,-,MLT1C,LTR,ERVL-MaLR,-2,465,1,117145318,117145760 +5 - chr7 117146132 117146195 chr7,117146062,117146195,-,MIRb,SINE,MIR,-21,247,125,117146041,117146319 +4 - chr7 117146297 117146480 chr7,117146297,117146858,-,L2,LINE,L2,-374,3045,2427,117145923,117149284 +1 - chr7 117300861 117301030 chr7,117300823,117301104,+,MLT1L,LTR,ERVL-MaLR,292,609,-1,117300532,117301105 +1 + chr7 117604880 117604989 chr7,117604880,117605047,+,MIRb,SINE,MIR,6,201,-67,117604875,117605114 -2 + chr7 117647351 117647415 chr7,117647268,117647667,-,MSTA,LTR,ERVL-MaLR,0,428,1,117647268,117647667 +1 - chr7 117998858 117999063 chr7,117998806,117999063,-,MLT1A1,LTR,ERVL-MaLR,0,408,132,117998806,117999194 +5 - chr7 119704556 119704678 chr7,119704380,119704678,-,L1MCb,LINE,L1,-4218,2533,2211,119700162,119706888 +5 - chr7 119704713 119704777 chr7,119704713,119704777,-,L1MCb,LINE,L1,-4791,1960,1897,119699922,119706673 +6 - chr7 119704777 119704972 chr7,119704777,119705200,-,MLT1A,LTR,ERVL-MaLR,0,374,1,119704777,119705200 +2 - chr7 119751523 119751569 chr7,119751523,119751569,+,(AT)n,Simple_repeat,Simple_repeat,1,46,0,119751523,119751569 -6 + chr7 119751836 119751900 chr7,119751836,119751900,+,L1M5,LINE,L1,2513,2566,-3580,119749324,119755480 -6 + chr7 119751900 119752175 chr7,119751900,119752191,+,AluSx,SINE,Alu,1,293,-19,119751900,119752210 -2 + chr7 119782284 119782357 chr7,119782200,119782584,-,THE1D,LTR,ERVL-MaLR,0,381,1,119782200,119782584 +3 - chr7 119907293 119907375 chr7,119907219,119907508,-,THE1A,LTR,ERVL-MaLR,-3,352,66,119907216,119907573 +1 - chr7 120142716 120142996 chr7,120141931,120143143,-,L1MC1,LINE,L1,-13,6320,5133,120141918,120148275 +1 - chr7 120168345 120168394 chr7,120168084,120168710,-,L1MC3,LINE,L1,-5440,605,3,120162644,120168712 -1 - chr7 120184972 120185102 chr7,120184964,120185132,+,MLT1G3,LTR,ERVL-MaLR,231,399,-196,120184734,120185328 +3 + chr7 120185495 120185807 chr7,120185277,120185807,+,LTR33A_,LTR,ERVL,2,531,0,120185276,120185807 +2 + chr7 121643737 121643758 chr7,121643737,121644157,-,MSTB,LTR,ERVL-MaLR,-1,425,1,121643736,121644157 +2 - chr7 121650253 121650302 chr7,121650192,121650302,-,MLT2A1,LTR,ERVL,-40,512,401,121650152,121650702 +4 - chr7 121650304 121650360 chr7,121650304,121651108,+,THE1D-int,LTR,ERVL-MaLR,774,1581,-50,121649531,121651158 -1 + chr7 122216347 122216462 chr7,122216104,122216521,-,L2,LINE,L2,-1653,1766,1308,122214451,122217828 -1 - chr7 122218142 122218283 chr7,122218113,122218283,+,MER5B,DNA,hAT-Charlie,1,178,0,122218113,122218283 +2 + chr7 122354329 122354416 chr7,122354219,122354438,-,MIR,SINE,MIR,-1,261,4,122354218,122354441 -3 - chr7 122357356 122357409 chr7,122355924,122358633,-,L1MC3,LINE,L1,-8,7777,4970,122355916,122363602 -3 - chr7 122368070 122368178 chr7,122368065,122368178,-,AluSx,SINE,Alu,-199,113,1,122367866,122368178 -2 - chr7 122412993 122413082 chr7,122412993,122413129,+,MIRb,SINE,MIR,1,150,-118,122412993,122413247 +4 + chr7 123069367 123069480 chr7,123069367,123069480,-,Charlie16a,DNA,hAT-Charlie,-212,130,6,123069155,123069485 +6 - chr7 123102461 123102531 chr7,123102446,123103350,+,L1MEc,LINE,L1,3752,4756,-1563,123098695,123104913 -3 + chr7 123459693 123459711 chr7,123459249,123459711,+,MLT2B4,LTR,ERVL,1,556,0,123459249,123459711 +2 + chr7 123584859 123585000 chr7,123584589,123585095,+,L1M5,LINE,L1,4214,4759,-1387,123580376,123586482 -5 + chr7 123596352 123596438 chr7,123596329,123596663,+,AluJb,SINE,Alu,1,312,0,123596329,123596663 -3 + chr7 123620094 123620305 chr7,123620094,123620357,-,MLT1J,LTR,ERVL-MaLR,-250,262,5,123619844,123620361 +2 - chr7 123623106 123623160 chr7,123623106,123623190,+,L2b,LINE,L2,3245,3331,-44,123619862,123623234 -2 + chr7 123749904 123749960 chr7,123749904,123749960,+,MamRTE1,LINE,RTE-BovB,2208,2259,-1553,123747697,123751513 +6 + chr7 123750521 123750630 chr7,123750521,123750630,+,MIRc,SINE,MIR,39,154,-114,123750483,123750744 +6 + chr7 123750690 123750929 chr7,123750690,123750929,+,L1MA5A,LINE,L1,6035,6285,-12,123744656,123750941 +6 + chr7 123995019 123995234 chr7,123995019,123995234,-,MIR,SINE,MIR,-19,243,26,123995000,123995259 -6 - chr7 123999023 123999149 chr7,123998847,123999560,-,L2,LINE,L2,-2426,993,192,123996421,123999751 -3 - chr7 124013111 124013128 chr7,124013082,124013128,+,LTR44,LTR,ERV1,481,519,0,124012602,124013128 +2 + chr7 124026401 124026666 chr7,124026375,124026666,-,AluJr,SINE,Alu,-12,300,1,124026363,124026666 -2 - chr7 124026865 124026977 chr7,124026865,124026977,+,L3,LINE,CR1,3968,4088,-11,124022898,124026988 +6 + chr7 124274679 124274998 chr7,124274629,124275050,-,MLT1F2,LTR,ERVL-MaLR,0,560,173,124274629,124275222 +5 - chr7 124334294 124334431 chr7,124334151,124334557,-,MLT1A1,LTR,ERVL-MaLR,-1,407,1,124334150,124334557 -1 - chr7 124342461 124342561 chr7,124340192,124342607,-,Tigger1,DNA,TcMar-Tigger,0,2418,1,124340192,124342607 +3 - chr7 124349829 124349860 chr7,124349822,124350016,-,L1PB1,LINE,L1,-6663,200,5,124343159,124350020 +1 - chr7 124385598 124385649 chr7,124385375,124385722,+,THE1A,LTR,ERVL-MaLR,1,355,0,124385375,124385722 +3 + chr7 124391452 124391481 chr7,124391452,124391481,+,(AC)n,Simple_repeat,Simple_repeat,1,29,0,124391452,124391481 +6 + chr7 124392154 124392190 chr7,124392154,124392190,+,(A)n,Simple_repeat,Simple_repeat,1,36,0,124392154,124392190 +6 + chr7 124392338 124392738 chr7,124392338,124392738,+,MLT1B,LTR,ERVL-MaLR,4,386,-4,124392335,124392742 +6 + chr7 124392790 124393582 chr7,124392790,124393582,-,L1MD2,LINE,L1,-2,6357,5507,124392788,124399088 -6 - chr7 124393728 124393895 chr7,124393728,124393895,-,MER63A,DNA,hAT-Blackjack,-49,161,1,124393679,124393895 -6 - chr7 124394050 124394287 chr7,124394050,124394287,+,L1ME4a,LINE,L1,5863,6122,-2,124388188,124394289 +6 + chr7 124394291 124394362 chr7,124394291,124394362,+,(TA)n,Simple_repeat,Simple_repeat,1,76,0,124394291,124394362 +6 + chr7 124394660 124394811 chr7,124394660,124394811,+,MIRb,SINE,MIR,3,173,-89,124394658,124394900 +6 + chr7 124742312 124742731 chr7,124742037,124742731,+,L1ME1,LINE,L1,5412,6154,-25,124736626,124742756 -5 + chr7 124742757 124743265 chr7,124742757,124743265,+,L2a,LINE,L2,2803,3422,-4,124739955,124743269 -6 + chr7 124743844 124743883 chr7,124743844,124743883,+,(T)n,Simple_repeat,Simple_repeat,1,39,0,124743844,124743883 -6 + chr7 124744433 124744786 chr7,124744433,124744786,+,L2c,LINE,L2,2981,3338,-49,124741453,124744835 -6 + chr7 124940344 124940385 chr7,124940344,124940757,+,MLT1L,LTR,ERVL-MaLR,192,587,-23,124940153,124940780 +4 + chr7 125000733 125000987 chr7,125000733,125000987,+,AluSz6,SINE,Alu,1,269,-43,125000733,125001030 +6 + chr7 125101960 125102050 chr7,125101754,125102105,+,MSTB,LTR,ERVL-MaLR,1,426,0,125101754,125102105 +5 + chr7 125116874 125116929 chr7,125116756,125116929,-,LTR33B,LTR,ERVL,-321,182,2,125116435,125116930 -2 - chr7 125118629 125118722 chr7,125118394,125118801,+,MSTB,LTR,ERVL-MaLR,1,423,-3,125118394,125118804 +3 + chr7 125122981 125123075 chr7,125122956,125125062,-,L1PA7,LINE,L1,-1,6468,4357,125122955,125129418 -3 - chr7 125125825 125125976 chr7,125125809,125125976,-,L2c,LINE,L2,-140,3247,3077,125125669,125129052 -5 - chr7 125142715 125142759 chr7,125142620,125142759,-,Charlie2b,DNA,hAT-Charlie,-2109,673,533,125140511,125143291 -2 - chr7 125142786 125142896 chr7,125142786,125142896,-,Charlie2b,DNA,hAT-Charlie,-2634,148,31,125140152,125142926 -6 - chr7 125142931 125142997 chr7,125142931,125142997,-,MADE1,DNA,TcMar-Mariner,-4,76,1,125142927,125142997 -6 - chr7 125143129 125143161 chr7,125143129,125143161,+,(TTCC)n,Simple_repeat,Simple_repeat,1,72,0,125143129,125143161 +6 + chr7 125143161 125143204 chr7,125143161,125143204,+,(TTCTTTG)n,Simple_repeat,Simple_repeat,1,45,0,125143161,125143204 +6 + chr7 125143216 125143241 chr7,125143216,125143241,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,125143216,125143241 +6 + chr7 125143319 125143433 chr7,125143319,125143433,-,Charlie2b,DNA,hAT-Charlie,-2634,148,9,125140685,125143441 -6 - chr7 125153486 125153564 chr7,125153469,125153564,-,MIRc,SINE,MIR,-123,145,48,125153346,125153611 -2 - chr7 125153469 125153564 chr7,125153469,125153564,-,MIRc,SINE,MIR,-123,145,48,125153346,125153611 +6 - chr7 125177644 125178040 chr7,125177639,125178040,+,L1PA13,LINE,L1,4193,4606,-1540,125173447,125179580 +2 + chr7 125178279 125179312 chr7,125178279,125179312,+,L1PA13,LINE,L1,5111,6158,-5,125173169,125179317 +6 + chr7 125186059 125186368 chr7,125186059,125186368,+,L1M4,LINE,L1,4659,5005,-1141,125181401,125187509 +6 + chr7 125186360 125186492 chr7,125186360,125192478,+,L1M1,LINE,L1,8,6469,-1096,125186353,125193574 +4 + chr7 125229579 125229770 chr7,125229406,125229770,-,THE1D,LTR,ERVL-MaLR,0,381,1,125229406,125229770 +5 - chr7 125229770 125230841 chr7,125229770,125231388,-,THE1D-int,LTR,ERVL-MaLR,0,1631,3,125229770,125231390 +2 - chr7 125246416 125246530 chr7,125246416,125246727,+,AluJb,SINE,Alu,1,309,-3,125246416,125246730 -2 + chr7 125249980 125250016 chr7,125249912,125250016,-,L2c,LINE,L2,-180,3207,3112,125249732,125253127 +4 - chr7 125264043 125264188 chr7,125261223,125264188,-,HERVH-int,LTR,ERV1,-4718,2995,1,125256505,125264188 +4 - chr7 125264190 125264291 chr7,125264190,125264637,-,LTR7,LTR,ERV1,-2,448,1,125264188,125264637 +1 - chr7 125329682 125329693 chr7,125329345,125329693,+,MLT1C,LTR,ERVL-MaLR,93,467,0,125329253,125329693 +2 + chr7 125330257 125330403 chr7,125330164,125330417,+,MER47B,DNA,TcMar-Tigger,21,283,-135,125330144,125330552 +3 + chr7 125347125 125347207 chr7,125347091,125347215,+,MIR,SINE,MIR,83,240,-22,125347009,125347237 +3 + chr7 125363435 125363516 chr7,125363413,125365049,-,L1PA15,LINE,L1,-6,6779,5183,125363407,125370231 -3 - chr7 125431347 125431393 chr7,125431292,125431393,+,MLT1J2,LTR,ERVL-MaLR,3,105,-339,125431290,125431732 +1 + chr7 125431458 125431593 chr7,125431458,125431669,+,MLT1J2,LTR,ERVL-MaLR,205,448,0,125431254,125431669 +4 + chr7 125466270 125466401 chr7,125466249,125466542,-,AluSg,SINE,Alu,-15,295,1,125466234,125466542 -5 - chr7 125917871 125917965 chr7,125917556,125917965,+,LTR7,LTR,ERV1,1,448,-2,125917556,125917967 +1 + chr7 125917967 125918118 chr7,125917967,125923102,+,HERVH-int,LTR,ERV1,1,5145,-2568,125917967,125925670 +4 + chr7 125920057 125920153 chr7,125917967,125923102,+,HERVH-int,LTR,ERV1,1,5145,-2568,125917967,125925670 +3 + chr7 125923700 125923950 chr7,125923700,125924110,+,LTR7,LTR,ERV1,1,448,-2,125923700,125924112 +4 + chr7 125933774 125933832 chr7,125933736,125934266,+,MLT1H1,LTR,ERVL-MaLR,44,554,-1,125933693,125934267 +5 + chr7 126418236 126418254 chr7,126417926,126418254,+,MLT1A,LTR,ERVL-MaLR,52,372,-2,126417875,126418256 +2 + chr7 126424121 126424185 chr7,126424117,126426497,-,Tigger1,DNA,TcMar-Tigger,0,2418,24,126424117,126426520 -5 - chr7 127215127 127215253 chr7,127214824,127215773,-,L1MEd,LINE,L1,-6114,972,2,127208710,127215774 -1 - chr7 127219467 127219692 chr7,127219441,127219692,-,AluJr,SINE,Alu,-12,300,44,127219429,127219735 -2 - chr7 127228373 127228461 chr7,127228370,127228461,+,L3,LINE,CR1,3713,3809,-290,127224658,127228751 +2 + chr7 127228523 127228631 chr7,127228523,127228631,+,L3,LINE,CR1,3990,4097,-2,127224534,127228633 +6 + chr7 127349897 127349997 chr7,127349897,127349997,-,L2a,LINE,L2,-8,3418,3313,127349889,127353309 +6 - chr7 127350178 127350517 chr7,127350178,127351139,-,Charlie24,DNA,hAT-Charlie,-38,2412,743,127350140,127351881 -1 - chr7 127350178 127350293 chr7,127350178,127351139,-,Charlie24,DNA,hAT-Charlie,-38,2412,743,127350140,127351881 +1 - chr7 127359967 127360121 chr7,127359967,127360121,+,MER5A1,DNA,hAT-Charlie,1,158,-8,127359967,127360129 -6 + chr7 127360142 127360310 chr7,127360142,127360310,-,MER5B,DNA,hAT-Charlie,-1,188,4,127360141,127360313 +6 - chr7 127360960 127361248 chr7,127360960,127361248,-,L2c,LINE,L2,-5,3370,3055,127360955,127364302 +6 - chr7 127361295 127361563 chr7,127361295,127361563,+,AluJr,SINE,Alu,1,263,-49,127361295,127361612 -6 + chr7 127361610 127361727 chr7,127361610,127361727,+,L2c,LINE,L2,3281,3387,0,127358330,127361727 -6 + chr7 127362541 127362819 chr7,127362541,127362819,-,L2b,LINE,L2,0,3375,3082,127362541,127365900 +6 - chr7 127362884 127363420 chr7,127362884,127363420,-,L2b,LINE,L2,-669,2750,2182,127362215,127365601 +6 - chr7 127363441 127363696 chr7,127363441,127363696,-,L2c,LINE,L2,-3,3384,3088,127363438,127366783 +6 - chr7 127364335 127364657 chr7,127364335,127364657,-,L2c,LINE,L2,-1,3386,3074,127364334,127367730 +6 - chr7 127645056 127645079 chr7,127644746,127645079,+,MER44A,DNA,TcMar-Tigger,2,339,0,127644745,127645079 -4 + chr7 127997882 127998128 chr7,127997882,127998128,+,L2c,LINE,L2,3134,3387,0,127994749,127998128 +6 + chr7 128264526 128264681 chr7,128264479,128264681,-,MamGypsy2-LTR,LTR,Gypsy,0,183,12,128264479,128264692 +5 - chr7 128264852 128264889 chr7,128264852,128264889,+,G-rich,Low_complexity,Low_complexity,1,37,0,128264852,128264889 -1 + chr7 128524437 128524742 chr7,128524437,128524742,-,AluYm1,SINE,Alu,-13,298,2,128524424,128524743 +6 - chr7 128524992 128525304 chr7,128524992,128525304,+,AluSc8,SINE,Alu,1,311,0,128524992,128525304 -6 + chr7 128526050 128526234 chr7,128526050,128526234,+,MER5A,DNA,hAT-Charlie,1,187,-2,128526050,128526236 -6 + chr7 128526236 128526398 chr7,128526236,128526398,+,MER58A,DNA,hAT-Charlie,2,178,-46,128526235,128526444 -6 + chr7 128526449 128526629 chr7,128526449,128526629,-,AluJb,SINE,Alu,-5,307,126,128526444,128526754 +6 - chr7 128526629 128526940 chr7,128526629,128526940,-,AluY,SINE,Alu,-2,309,1,128526627,128526940 +6 - chr7 128526940 128526964 chr7,128526940,128526964,-,AluJb,SINE,Alu,-187,125,111,128526753,128527074 +6 - chr7 128526964 128527258 chr7,128526964,128527258,-,AluY,SINE,Alu,-15,296,1,128526949,128527258 +6 - chr7 128527258 128527375 chr7,128527258,128527375,-,AluJb,SINE,Alu,-202,110,1,128527056,128527375 +6 - chr7 128527380 128527516 chr7,128527380,128527516,-,FLAM_A,SINE,Alu,-10,132,1,128527370,128527516 +6 - chr7 128527526 128527589 chr7,128527526,128527589,+,AluSx3,SINE,Alu,211,273,-38,128527316,128527627 -6 + chr7 128527677 128527812 chr7,128527677,128527812,-,MIRb,SINE,MIR,-21,247,106,128527656,128527917 +6 - chr7 128527870 128527896 chr7,128527870,128527896,+,(AAT)n,Simple_repeat,Simple_repeat,1,25,0,128527870,128527896 -6 + chr7 128527896 128528184 chr7,128527896,128528184,-,AluSc5,SINE,Alu,-25,284,1,128527871,128528184 +6 - chr7 128528184 128528212 chr7,128528184,128528212,+,(AAT)n,Simple_repeat,Simple_repeat,2,28,0,128528183,128528212 -6 + chr7 128528212 128528502 chr7,128528212,128528502,-,AluSc8,SINE,Alu,-22,289,1,128528190,128528502 +6 - chr7 128528514 128528821 chr7,128528514,128528821,-,AluSz,SINE,Alu,-6,306,1,128528508,128528821 +6 - chr7 128528847 128529154 chr7,128528847,128529154,+,AluSx3,SINE,Alu,1,307,-4,128528847,128529158 -6 + chr7 128529154 128529289 chr7,128529154,128529289,-,MIR3,SINE,MIR,-44,164,19,128529110,128529307 +6 - chr7 128529340 128529634 chr7,128529340,128529634,+,AluSx,SINE,Alu,1,292,-20,128529340,128529654 -6 + chr7 128667043 128667098 chr7,128666806,128667098,-,AluJr,SINE,Alu,-12,300,3,128666794,128667100 -1 - chr7 128667098 128667416 chr7,128667098,128667416,-,L1MEf,LINE,L1,-4709,1491,1137,128662389,128668552 -6 - chr7 128667721 128668031 chr7,128667721,128668031,-,L1ME4b,LINE,L1,-1982,795,445,128665739,128668475 -6 - chr7 128668112 128668142 chr7,128668112,128668142,+,(AATA)n,Simple_repeat,Simple_repeat,1,31,0,128668112,128668142 +6 + chr7 128687292 128687419 chr7,128687292,128687419,-,MLT1N2,LTR,ERVL-MaLR,0,562,432,128687292,128687850 -6 - chr7 128687499 128687586 chr7,128687499,128687586,-,MLT1N2,LTR,ERVL-MaLR,-506,89,6,128686993,128687591 -6 - chr7 128690667 128691230 chr7,128690667,128691230,+,HAL1,LINE,L1,1667,2276,-231,128689001,128691461 +6 + chr7 128691299 128691388 chr7,128691299,128691388,+,LTR33,LTR,ERVL,114,202,-313,128691186,128691701 +6 + chr7 128691428 128691685 chr7,128691428,128691685,+,MER41B,LTR,ERV1,1,284,-350,128691428,128692035 +6 + chr7 128691690 128691717 chr7,128691690,128691797,+,MER41B,LTR,ERV1,523,634,0,128691168,128691797 +5 + chr7 128862525 128862553 chr7,128862459,128862553,-,L2c,LINE,L2,0,3387,3296,128862459,128865848 +4 - chr7 129209966 129210100 chr7,129209966,129210100,-,MER5B,DNA,hAT-Charlie,-36,142,8,129209930,129210107 +6 - chr7 129604578 129604630 chr7,129604578,129604630,+,A-rich,Low_complexity,Low_complexity,1,51,0,129604578,129604630 -6 + chr7 129604631 129604743 chr7,129604631,129604743,-,L1ME4b,LINE,L1,-222,670,545,129604409,129605287 +6 - chr7 129605259 129605416 chr7,129605259,129605416,-,MER96,DNA,hAT-Tip100,-13,162,2,129605246,129605417 +6 - chr7 129605424 129605589 chr7,129605424,129605589,+,L2c,LINE,L2,3172,3343,-44,129602253,129605633 -6 + chr7 129605812 129606087 chr7,129605812,129606087,-,MLT1O,LTR,ERVL-MaLR,-170,372,110,129605642,129606196 +6 - chr7 129606220 129606384 chr7,129606220,129606384,-,MLT1O,LTR,ERVL-MaLR,-348,194,31,129605872,129606414 +6 - chr7 129606538 129606831 chr7,129606538,129606831,+,AluSx,SINE,Alu,1,293,-19,129606538,129606850 -6 + chr7 129608047 129608344 chr7,129608047,129608344,+,AluSq2,SINE,Alu,4,301,-12,129608044,129608356 -6 + chr7 129608788 129608960 chr7,129608788,129608960,+,MamRep1151,LTR?,LTR?,16,182,-527,129608773,129609487 -6 + chr7 129608968 129609081 chr7,129608968,129609081,-,MER112,DNA,hAT-Charlie,-101,160,27,129608867,129609107 +6 - chr7 129609098 129609233 chr7,129609098,129609233,+,MIR,SINE,MIR,11,151,-111,129609088,129609344 -6 + chr7 129609233 129609473 chr7,129609233,129609473,+,AluJo,SINE,Alu,1,294,-18,129609233,129609491 -6 + chr7 129609473 129609583 chr7,129609473,129609583,+,MIR,SINE,MIR,152,254,-8,129609322,129609591 -6 + chr7 129609581 129610148 chr7,129609581,129610148,-,L2b,LINE,L2,-167,3220,2617,129609414,129612764 +6 - chr7 129610148 129610440 chr7,129610148,129610440,+,AluJb,SINE,Alu,1,291,-21,129610148,129610461 -6 + chr7 129610440 129610616 chr7,129610440,129610616,-,L2b,LINE,L2,-803,2616,2409,129609637,129613024 +6 - chr7 129610673 129610752 chr7,129610673,129610752,-,MER5A,DNA,hAT-Charlie,0,189,121,129610673,129610872 +6 - chr7 129610870 129611003 chr7,129610870,129611003,+,FLAM_C,SINE,Alu,2,132,-11,129610869,129611014 -6 + chr7 129611095 129611208 chr7,129611095,129611208,+,L2b,LINE,L2,3261,3375,0,129607835,129611208 -6 + chr7 129784374 129784471 chr7,129784213,129784501,+,AluSp,SINE,Alu,1,285,-28,129784213,129784529 -3 + chr7 130023013 130023070 chr7,130022738,130023243,+,MER1A,DNA,hAT-Charlie,2,529,0,130022737,130023243 +3 + chr7 130482835 130483042 chr7,130482835,130483042,-,L1ME4b,LINE,L1,-376,516,279,130482459,130483320 +6 - chr7 130483875 130483975 chr7,130483875,130483975,+,L2c,LINE,L2,3196,3302,-85,130480680,130484060 -6 + chr7 130484006 130484072 chr7,130484006,130484072,-,MIR,SINE,MIR,-21,241,176,130483985,130484247 +6 - chr7 130495963 130496112 chr7,130495963,130496112,-,MIRb,SINE,MIR,-10,258,103,130495953,130496214 +6 - chr7 130497281 130497565 chr7,130497281,130497565,+,AluSx,SINE,Alu,1,291,-21,130497281,130497586 -6 + chr7 130790525 130790801 chr7,130790525,130790801,+,AluJb,SINE,Alu,17,296,-16,130790509,130790817 +6 + chr7 130790952 130791113 chr7,130790952,130791113,+,LTR79,LTR,ERVL,7,178,-349,130790946,130791462 +6 + chr7 130791216 130791581 chr7,130791216,130791581,-,THE1C,LTR,ERVL-MaLR,-1,374,1,130791215,130791581 -6 - chr7 130862124 130862202 chr7,130861923,130862276,+,THE1A,LTR,ERVL-MaLR,1,355,0,130861923,130862276 +3 + chr7 130876989 130877293 chr7,130876989,130877293,-,MER2,DNA,TcMar-Tigger,0,345,26,130876989,130877318 +6 - chr7 130878392 130878806 chr7,130878392,130878806,-,L1MC5a,LINE,L1,-1,2776,2339,130878391,130881144 +6 - chr7 130878861 130878950 chr7,130878861,130878950,+,MIRc,SINE,MIR,46,139,-129,130878816,130879079 -6 + chr7 130879840 130880136 chr7,130879840,130880136,+,AluSz,SINE,Alu,1,289,-23,130879840,130880159 -6 + chr7 130880136 130880308 chr7,130880136,130880308,+,AluSx1,SINE,Alu,134,310,-2,130880003,130880310 -6 + chr7 130880308 130880582 chr7,130880308,130880582,+,AluSg4,SINE,Alu,1,304,-6,130880308,130880588 -6 + chr7 130882066 130882256 chr7,130882066,130882256,+,MIRb,SINE,MIR,65,266,-2,130882002,130882258 -6 + chr7 130882334 130882570 chr7,130882334,130882570,-,MIRb,SINE,MIR,0,268,30,130882334,130882599 +6 - chr7 130884109 130884243 chr7,130883947,130884243,+,AluJb,SINE,Alu,2,300,-12,130883946,130884255 -5 + chr7 130914964 130915076 chr7,130914890,130915076,-,AluJb,SINE,Alu,-126,186,1,130914764,130915076 -2 - chr7 130915903 130916038 chr7,130915903,130916038,+,MIRc,SINE,MIR,2,137,-131,130915902,130916169 +6 + chr7 130916072 130916132 chr7,130916072,130916299,-,MIR,SINE,MIR,-37,225,1,130916035,130916299 -4 - chr7 130928074 130928145 chr7,130928074,130928145,+,MIR1_Amn,SINE,MIR,34,106,-124,130928041,130928269 +6 + chr7 130928404 130928649 chr7,130928404,130928716,+,AluJo,SINE,Alu,1,312,0,130928404,130928716 +5 + chr7 130931096 130931136 chr7,130931096,130931136,+,A-rich,Low_complexity,Low_complexity,1,43,0,130931096,130931136 -6 + chr7 130937023 130937063 chr7,130937023,130937063,+,(TTTCTT)n,Simple_repeat,Simple_repeat,1,40,0,130937023,130937063 +6 + chr7 130937280 130937337 chr7,130937280,130937337,+,L2c,LINE,L2,3363,3421,-5,130933918,130937342 +6 + chr7 130937893 130938187 chr7,130937893,130938187,-,AluJr4,SINE,Alu,-22,290,5,130937871,130938191 -6 - chr7 130938413 130938508 chr7,130938413,130938508,+,MARNA,DNA,TcMar-Mariner,270,386,-200,130938144,130938708 +6 + chr7 130938657 130938693 chr7,130938657,130938693,+,A-rich,Low_complexity,Low_complexity,1,36,0,130938657,130938693 +6 + chr7 130938879 130938899 chr7,130938879,130938899,+,(A)n,Simple_repeat,Simple_repeat,1,20,0,130938879,130938899 +6 + chr7 130967426 130967517 chr7,130967426,130967644,+,MER112,DNA,hAT-Charlie,1,233,-28,130967426,130967672 -2 + chr7 131002197 131002320 chr7,131002039,131002345,+,AluSx,SINE,Alu,1,306,-6,131002039,131002351 -3 + chr7 131049538 131049635 chr7,131049058,131049635,+,L2a,LINE,L2,2275,2911,-508,131046784,131050143 -4 + chr7 131049635 131049702 chr7,131049635,131050158,-,MER41A,LTR,ERV1,0,554,1,131049635,131050158 +2 - chr7 131108190 131108237 chr7,131108190,131108237,+,(GCA)n,Simple_repeat,Simple_repeat,1,47,0,131108190,131108237 -6 + chr7 131108677 131108803 chr7,131108677,131108859,-,UCON29,DNA,PiggyBac?,-237,202,13,131108440,131108871 +2 - chr7 131110038 131110096 chr7,131110038,131110096,+,GA-rich,Low_complexity,Low_complexity,1,59,0,131110038,131110096 -6 + chr7 131309744 131310024 chr7,131309721,131310024,-,AluY,SINE,Alu,-8,303,1,131309713,131310024 +5 - chr7 131310024 131310334 chr7,131310024,131310334,-,LTR56,LTR,ERV1,-120,325,5,131309904,131310338 +6 - chr7 131310480 131310554 chr7,131310480,131310554,-,LTR49-int,LTR,ERV1,-848,5910,5840,131309632,131316393 +6 - chr7 131310543 131310773 chr7,131310543,131311999,-,LTR49-int,LTR,ERV1,-1063,5268,3772,131309480,131315770 +2 - chr7 131311130 131311223 chr7,131310543,131311999,-,LTR49-int,LTR,ERV1,-1063,5268,3772,131309480,131315770 +3 - chr7 131323365 131323733 chr7,131323241,131323733,-,ERV24_Prim-int,LTR,ERV1,-6234,1341,831,131317007,131324563 +5 - chr7 131494898 131494940 chr7,131494898,131494940,+,(TACA)n,Simple_repeat,Simple_repeat,1,42,0,131494898,131494940 -6 + chr7 131910220 131910571 chr7,131909166,131910634,+,LTR12C,LTR,ERV1,2,1579,0,131909165,131910634 +1 + chr7 131928581 131928606 chr7,131928581,131928944,+,L3,LINE,CR1,3625,4001,-98,131924957,131929042 +4 + chr7 131932123 131932309 chr7,131931758,131932343,-,L1MC4,LINE,L1,-140,7902,7269,131931618,131939611 -3 - chr7 132271132 132271269 chr7,132271132,132271275,+,MLT1J2,LTR,ERVL-MaLR,263,405,-43,132270870,132271318 +5 + chr7 132367807 132367976 chr7,132367807,132367998,-,MIRb,SINE,MIR,-49,219,4,132367758,132368001 -5 - chr7 132648794 132649043 chr7,132648752,132649160,+,L1MD3,LINE,L1,7569,7995,0,132641184,132649160 +1 + chr7 132661991 132662082 chr7,132661757,132662107,+,LTR40b,LTR,ERVL,1,357,-105,132661757,132662212 +3 + chr7 132671948 132672123 chr7,132671948,132672123,-,MIR3,SINE,MIR,-11,197,18,132671937,132672140 -6 - chr7 132724777 132724867 chr7,132724687,132724867,-,L3,LINE,CR1,-348,3751,3559,132724339,132728425 -2 - chr7 132758970 132759181 chr7,132758833,132759181,+,MLT1B,LTR,ERVL-MaLR,5,382,-8,132758829,132759189 +1 + chr7 132760334 132760479 chr7,132760334,132760479,-,MER103C,DNA,hAT-Charlie,-79,218,53,132760255,132760531 -6 - chr7 132845067 132845143 chr7,132845067,132845279,+,MIR,SINE,MIR,2,236,-26,132845066,132845305 +4 + chr7 132847279 132847345 chr7,132847221,132847345,-,LTR67B,LTR,ERVL,-496,124,1,132846725,132847345 -2 - chr7 134285856 134285894 chr7,134285719,134285894,+,LTR33B,LTR,ERVL,1,188,-315,134285719,134286209 +2 + chr7 134418904 134418955 chr7,134418904,134418955,+,(GTCTCT)n,Simple_repeat,Simple_repeat,1,52,0,134418904,134418955 -6 + chr7 134432314 134432453 chr7,134432177,134432666,-,MER1A,DNA,hAT-Charlie,0,529,1,134432177,134432666 +1 - chr7 134684144 134684215 chr7,134684028,134684612,-,Tigger3b,DNA,TcMar-Tigger,0,1231,604,134684028,134685215 -1 - chr7 134686283 134686325 chr7,134686283,134686528,+,AluSg,SINE,Alu,58,302,-8,134686226,134686536 +4 + chr7 134687965 134687990 chr7,134687927,134688249,-,AluSq2,SINE,Alu,0,313,1,134687927,134688249 -5 - chr7 135202077 135202278 chr7,135201677,135202278,+,L3,LINE,CR1,3386,4096,-3,135198292,135202281 +2 + chr7 135704537 135704836 chr7,135704465,135704836,+,LTR78B,LTR,ERV1,889,1260,-36,135703577,135704872 +1 + chr7 135932520 135932607 chr7,135932520,135932607,-,L1ME4a,LINE,L1,-89,6035,5948,135932431,135938554 -6 - chr7 135932626 135932739 chr7,135932626,135932739,+,L1M4,LINE,L1,2308,2423,-3723,135930319,135936462 +6 + chr7 135932807 135932881 chr7,135932807,135933122,+,AluSz6,SINE,Alu,1,306,-6,135932807,135933128 +5 + chr7 136025761 136025788 chr7,136025363,136026244,+,Kanga11a,DNA,TcMar-Tc2,2,935,-35,136025362,136026279 +1 + chr7 136084405 136084518 chr7,136084405,136084518,-,LTR78B,LTR,ERV1,-641,655,541,136083764,136085058 -6 - chr7 136092925 136093036 chr7,136092728,136093088,+,THE1A,LTR,ERVL-MaLR,1,323,-32,136092728,136093120 +1 + chr7 136117071 136117188 chr7,136117046,136117344,-,AluJo,SINE,Alu,-13,299,2,136117033,136117345 -3 - chr7 136328994 136329097 chr7,136328994,136329171,-,LTR78,LTR,ERV1,-814,490,308,136328180,136329478 -4 - chr7 136437173 136437367 chr7,136437173,136437367,-,MLT1H,LTR,ERVL-MaLR,-310,239,5,136436863,136437371 -6 - chr7 136437371 136437426 chr7,136437371,136439323,+,L1MC5,LINE,L1,7313,9280,-24,136430059,136439347 +5 + chr7 136752264 136752490 chr7,136751989,136752583,+,LTR10C,LTR,ERV1,1,591,0,136751989,136752583 -5 + chr7 136784231 136784489 chr7,136784231,136784489,-,MIRb,SINE,MIR,-8,260,4,136784223,136784492 +6 - chr7 136784993 136785034 chr7,136784993,136785034,+,(TG)n,Simple_repeat,Simple_repeat,1,41,0,136784993,136785034 -6 + chr7 136785333 136785357 chr7,136785333,136785357,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,136785333,136785357 -6 + chr7 136785455 136785890 chr7,136785455,136785890,-,Tigger2a,DNA,TcMar-Tigger,0,434,1,136785455,136785890 +5 - chr7 136902188 136902212 chr7,136902188,136902212,+,(ATCT)n,Simple_repeat,Simple_repeat,1,24,0,136902188,136902212 -6 + chr7 136902212 136902261 chr7,136902212,136902261,+,(ATCC)n,Simple_repeat,Simple_repeat,1,49,0,136902212,136902261 -6 + chr7 136902261 136902278 chr7,136902261,136902278,+,(ATCT)n,Simple_repeat,Simple_repeat,1,17,0,136902261,136902278 -6 + chr7 136902610 136902708 chr7,136902610,136902708,+,MamRTE1,LINE,RTE-BovB,3586,3690,-122,136899025,136902830 -6 + chr7 136906908 136906965 chr7,136906735,136907256,-,MER1A,DNA,hAT-Charlie,0,529,1,136906735,136907256 +3 - chr7 137032794 137032913 chr7,137032770,137032940,+,AluSc8,SINE,Alu,134,303,-8,137032637,137032948 -3 + chr7 137119757 137119767 chr7,137119707,137119767,+,L1P1,LINE,L1,3356,3415,-2731,137116352,137122498 -5 + chr7 137119803 137120177 chr7,137119803,137120177,-,MLT1I,LTR,ERVL-MaLR,-5,406,1,137119798,137120177 +6 - chr7 137120177 137120299 chr7,137120177,137120979,-,MLT1I-int,LTR,ERVL-MaLR,0,1387,562,137120177,137121540 +2 - chr7 137181608 137181771 chr7,137181608,137187601,+,L1PA3,LINE,L1,124,6152,-3,137181485,137187604 -1 + chr7 137181870 137182107 chr7,137181608,137187601,+,L1PA3,LINE,L1,124,6152,-3,137181485,137187604 -1 + chr7 137318691 137318857 chr7,137318691,137318877,+,MIRb,SINE,MIR,9,220,-48,137318683,137318925 +4 + chr7 137324744 137324797 chr7,137324744,137324905,+,MIRc,SINE,MIR,92,260,-8,137324653,137324913 +4 + chr7 137325460 137325477 chr7,137325460,137325477,+,(GGA)n,Simple_repeat,Simple_repeat,1,17,0,137325460,137325477 +6 + chr7 137326667 137326939 chr7,137326667,137326939,+,L2c,LINE,L2,3108,3370,-5,137323560,137326944 +6 + chr7 137326942 137326953 chr7,137326942,137326970,+,(ATGA)n,Simple_repeat,Simple_repeat,1,28,0,137326942,137326970 +5 + chr7 137350369 137350466 chr7,137350202,137350502,+,AluJr,SINE,Alu,1,291,-21,137350202,137350523 -3 + chr7 138163440 138163456 chr7,138163390,138163456,+,(GAGGAG)n,Simple_repeat,Simple_repeat,1,66,0,138163390,138163456 +1 + chr7 138163456 138163472 chr7,138163456,138163472,+,GA-rich,Low_complexity,Low_complexity,3,87,0,138163454,138163472 +6 + chr7 138164244 138164363 chr7,138164238,138164363,+,MER39,LTR,ERV1,1,123,-442,138164238,138164805 +2 + chr7 138164367 138164540 chr7,138164367,138164540,+,MER39,LTR,ERV1,330,463,-244,138164038,138164784 +6 + chr7 138164540 138164637 chr7,138164540,138165108,-,MER61E,LTR,ERV1,-4,565,1,138164536,138165108 -5 - chr7 140178210 140178236 chr7,140178210,140178236,+,(TCCTT)n,Simple_repeat,Simple_repeat,1,28,0,140178210,140178236 +6 + chr7 140178236 140178284 chr7,140178236,140178284,+,(TTCC)n,Simple_repeat,Simple_repeat,1,48,0,140178236,140178284 +6 + chr7 140178284 140178303 chr7,140178284,140178303,+,(TCCTT)n,Simple_repeat,Simple_repeat,4,22,0,140178281,140178303 +6 + chr7 140178303 140178618 chr7,140178303,140178618,-,AluSq,SINE,Alu,0,313,1,140178303,140178618 -6 - chr7 140178867 140179057 chr7,140178867,140179057,+,MIRc,SINE,MIR,37,226,-42,140178831,140179099 +6 + chr7 140179275 140179640 chr7,140179275,140179654,+,MSTA,LTR,ERVL-MaLR,3,394,-34,140179273,140179688 +5 + chr7 140695336 140695386 chr7,140695291,140695386,-,Charlie7,DNA,hAT-Charlie,-1948,664,547,140693343,140695932 +5 - chr7 140696276 140696430 chr7,140696276,140696430,+,AluSx,SINE,Alu,156,309,-3,140696121,140696433 -6 + chr7 141002939 141003128 chr7,141002939,141003128,-,MIRb,SINE,MIR,-26,242,6,141002913,141003133 +6 - chr7 141003933 141004018 chr7,141003933,141004018,+,L2b,LINE,L2,3277,3411,-15,141000657,141004033 -6 + chr7 141004018 141004308 chr7,141004018,141004308,+,AluY,SINE,Alu,1,294,-17,141004018,141004325 -6 + chr7 141004308 141004325 chr7,141004308,141004325,+,L2b,LINE,L2,3412,3426,0,141000897,141004325 -6 + chr7 141004611 141004685 chr7,141004611,141004685,+,L1MB2,LINE,L1,6082,6171,0,140998530,141004685 -6 + chr7 141004760 141004849 chr7,141004760,141005046,-,AluYj4,SINE,Alu,-20,291,1,141004740,141005046 +1 - chr7 141414383 141414489 chr7,141414383,141414489,-,L1ME4a,LINE,L1,-291,5833,5729,141414092,141420217 +5 - chr7 141414504 141414632 chr7,141414504,141414632,-,UCON74,DNA?,DNA?,-59,600,475,141414445,141415106 +6 - chr7 141416005 141416170 chr7,141415893,141416170,-,UCON74,DNA?,DNA?,-385,274,9,141415508,141416178 +4 - chr7 141429711 141429835 chr7,141429340,141429835,+,L1MA8,LINE,L1,5783,6287,-4,141423558,141429839 -5 + chr7 141512698 141512726 chr7,141512651,141512726,-,Tigger15a,DNA,TcMar-Tigger,-136,579,504,141512515,141513229 +5 - chr7 141512974 141513183 chr7,141512947,141513325,+,MLT1J1,LTR,ERVL-MaLR,2,441,-7,141512946,141513332 -1 + chr7 141529203 141529275 chr7,141528966,141529444,-,MLT1C,LTR,ERVL-MaLR,0,467,1,141528966,141529444 +5 - chr7 141531050 141531243 chr7,141531050,141531269,+,MIRc,SINE,MIR,14,255,-13,141531037,141531282 -2 + chr7 141547332 141547400 chr7,141547131,141547440,-,MLT1L,LTR,ERVL-MaLR,-303,307,22,141546828,141547461 +3 - chr7 141704847 141704915 chr7,141704847,141704915,-,MIR3,SINE,MIR,-7,201,129,141704840,141705043 +6 - chr7 141711758 141711800 chr7,141711679,141712070,-,MSTB,LTR,ERVL-MaLR,-2,424,31,141711677,141712100 +3 - chr7 141727733 141727821 chr7,141727733,141727821,+,MamRTE1,LINE,RTE-BovB,3389,3479,-333,141724345,141728154 -6 + chr7 141727983 141728145 chr7,141727983,141728148,+,U1,snRNA,snRNA,1,164,-1,141727983,141728149 -2 + chr7 141737383 141737590 chr7,141736645,141737590,+,Tigger3b,DNA,TcMar-Tigger,234,1230,-1,141736412,141737591 -1 + chr7 141737592 141737692 chr7,141737592,141737692,+,MER96B,DNA,hAT-Tip100,263,368,-49,141737330,141737741 -6 + chr7 142892665 142892721 chr7,142892665,142892824,+,MIR3,SINE,MIR,1,174,-56,142892665,142892880 +5 + chr7 143220468 143220738 chr7,143220441,143220738,+,AluJb,SINE,Alu,11,307,-5,143220431,143220743 -5 + chr7 143220792 143220977 chr7,143220792,143220977,-,Charlie8,DNA,hAT-Charlie,-70,261,85,143220722,143221061 +6 - chr7 143221104 143221271 chr7,143221104,143221271,-,MER5B,DNA,hAT-Charlie,-3,175,7,143221101,143221277 +6 - chr7 143255264 143255279 chr7,143253994,143255279,+,L1MA7,LINE,L1,4994,6282,-1280,143249001,143256559 -5 + chr7 143255279 143255397 chr7,143255279,143255397,-,FLAM_A,SINE,Alu,-23,119,1,143255256,143255397 +6 - chr7 143255397 143255421 chr7,143255397,143255947,+,L1MA7,LINE,L1,6283,6804,-758,143249115,143256705 -2 + chr7 143285777 143285822 chr7,143285777,143285822,-,MIR3,SINE,MIR,-4,204,156,143285773,143285977 +6 - chr7 143287186 143287326 chr7,143287186,143287326,-,MIRb,SINE,MIR,-89,179,22,143287097,143287347 +6 - chr7 143379899 143380010 chr7,143379899,143380010,+,MIR3,SINE,MIR,53,169,-39,143379847,143380049 -6 + chr7 143520256 143521362 chr7,143520256,143521362,-,L2a,LINE,L2,0,3426,2298,143520256,143523659 -6 - chr7 143521362 143521649 chr7,143521362,143521649,+,AluSz,SINE,Alu,1,286,-26,143521362,143521675 +6 + chr7 143521649 143521694 chr7,143521649,143521694,+,(AAAT)n,Simple_repeat,Simple_repeat,1,48,0,143521649,143521694 +6 + chr7 143521694 143521821 chr7,143521694,143521821,-,L2a,LINE,L2,-1122,2297,2182,143520572,143524002 -6 - chr7 143522104 143522218 chr7,143522104,143522218,+,MIRc,SINE,MIR,137,251,-17,143521968,143522235 +6 + chr7 143523015 143523449 chr7,143523015,143524560,+,L1MC,LINE,L1,3145,4891,-1255,143519871,143525815 +5 + chr7 143997141 143997255 chr7,143997139,143997255,+,AluJo,SINE,Alu,195,305,-7,143996945,143997262 +2 + chr7 143997256 143997312 chr7,143997256,143997856,+,L1MEf,LINE,L1,4495,5113,-1828,143992762,143999684 +5 + chr7 144200197 144200277 chr7,144200197,144200389,-,L2c,LINE,L2,-69,3318,3141,144200128,144203529 -4 - chr7 144214014 144214057 chr7,144213638,144214057,+,THE1A,LTR,ERVL-MaLR,1,355,0,144213638,144214057 +2 + chr7 144214057 144214223 chr7,144214057,144215633,+,THE1A-int,LTR,ERVL-MaLR,1,1580,0,144214057,144215633 +5 + chr7 144215859 144215912 chr7,144215633,144215987,+,THE1A,LTR,ERVL-MaLR,1,354,-1,144215633,144215988 +3 + chr7 144243747 144243835 chr7,144243523,144243883,+,MSTD,LTR,ERVL-MaLR,3,395,-1,144243521,144243884 +5 + chr7 144280472 144280540 chr7,144280345,144280540,+,MIRc,SINE,MIR,29,230,-38,144280317,144280578 +2 + chr7 144307145 144307232 chr7,144307095,144307455,-,MSTD,LTR,ERVL-MaLR,-1,395,3,144307094,144307457 +5 - chr7 144335079 144335132 chr7,144335003,144335357,-,THE1A,LTR,ERVL-MaLR,-1,354,1,144335002,144335357 +3 - chr7 144336768 144336933 chr7,144335357,144336933,-,THE1A-int,LTR,ERVL-MaLR,0,1580,1,144335357,144336933 +5 - chr7 144336933 144336977 chr7,144336933,144337352,-,THE1A,LTR,ERVL-MaLR,0,355,1,144336933,144337352 +2 - chr7 144349164 144349443 chr7,144349164,144349474,+,AluYa5,SINE,Alu,1,309,-2,144349164,144349476 -2 + chr7 144350718 144350797 chr7,144350605,144350797,+,L2c,LINE,L2,3141,3318,-69,144347465,144350866 -4 + chr7 145676021 145676292 chr7,145676021,145676300,+,ERV3-16A3_LTR,LTR,ERVL,128,451,0,145675894,145676300 -2 + chr7 145681109 145681173 chr7,145680989,145681173,-,L1ME3A,LINE,L1,-13,6160,5974,145680976,145687146 +4 - chr7 145681186 145681369 chr7,145681186,145681435,-,L1MB5,LINE,L1,0,6174,5927,145681186,145687361 +1 - chr7 146050121 146050335 chr7,146050121,146050335,+,MER58A,DNA,hAT-Charlie,2,220,-4,146050120,146050339 +6 + chr7 147081247 147081414 chr7,147081247,147081414,-,MamRep1527,LTR,LTR,-26,943,764,147081221,147082177 +6 - chr7 147081414 147081583 chr7,147081414,147081583,-,AluSc,SINE,Alu,-9,300,130,147081405,147081712 +6 - chr7 147081583 147081628 chr7,147081583,147081628,+,(TG)n,Simple_repeat,Simple_repeat,1,45,0,147081583,147081628 -6 + chr7 147081628 147081752 chr7,147081628,147081752,-,AluSc,SINE,Alu,-185,124,1,147081443,147081752 +6 - chr7 147081752 147082088 chr7,147081752,147082401,-,MamRep1527,LTR,LTR,-206,763,86,147081546,147082486 +2 - chr7 147082540 147082574 chr7,147082399,147082574,-,MLT1J,LTR,ERVL-MaLR,-335,177,4,147082064,147082577 +4 - chr7 147082884 147083174 chr7,147082884,147083174,-,MLT1L,LTR,ERVL-MaLR,-221,389,92,147082663,147083265 +6 - chr7 147097432 147097609 chr7,147097348,147097711,-,THE1B,LTR,ERVL-MaLR,0,364,1,147097348,147097711 +1 - chr7 148696631 148696744 chr7,148696631,148696744,-,L3,LINE,CR1,-768,3331,3219,148695863,148699962 +6 - chr7 149398299 149398371 chr7,149398299,149398371,-,tRNA-Cys-TGY,tRNA,tRNA,-3,72,1,149398296,149398371 -6 - chr7 149398857 149398943 chr7,149398857,149398943,+,MLT2D,LTR,ERVL,418,507,-53,149398440,149398996 +6 + chr7 149398945 149398976 chr7,149398945,149398976,+,(ATAG)n,Simple_repeat,Simple_repeat,1,33,0,149398945,149398976 +6 + chr7 149399020 149399104 chr7,149399020,149399104,+,MLT2D,LTR,ERVL,497,566,-1,149398524,149399105 +6 + chr7 149399104 149399200 chr7,149399104,149399200,+,L1MEd,LINE,L1,1524,1621,-5482,149397581,149404682 +6 + chr7 149399200 149399527 chr7,149399200,149399527,-,AluJb,SINE,Alu,-16,296,4,149399184,149399530 -6 - chr7 149399527 149399674 chr7,149399527,149399674,+,L1MEd,LINE,L1,1622,1762,-5341,149397906,149405015 +6 + chr7 149399766 149400069 chr7,149399766,149400069,+,AluSq2,SINE,Alu,1,304,-9,149399766,149400078 +6 + chr7 149400073 149400358 chr7,149400073,149400358,+,L1MEd,LINE,L1,2677,2977,-3169,149397397,149403527 +6 + chr7 149400744 149400809 chr7,149400744,149400809,-,MamRep605,LTR?,LTR?,-346,503,438,149400398,149401246 -6 - chr7 149401041 149401236 chr7,149401041,149401236,-,MamGypLTR1c,LTR,Gypsy,-13,790,587,149401028,149401822 -6 - chr7 149858405 149858481 chr7,149858405,149858481,+,(TA)n,Simple_repeat,Simple_repeat,1,78,0,149858405,149858481 -6 + chr7 149858726 149858837 chr7,149858726,149858837,-,MamTip2,DNA,hAT-Tip100,-154,151,29,149858572,149858865 +6 - chr7 149867733 149867812 chr7,149867733,149867812,-,MIRc,SINE,MIR,-20,248,167,149867713,149867978 +5 - chr7 149873608 149873665 chr7,149873608,149873665,+,(CGGCG)n,Simple_repeat,Simple_repeat,1,60,0,149873608,149873665 -6 + chr7 150004408 150005124 chr7,150004403,150005211,+,L1MC4,LINE,L1,7118,8040,-2,149997286,150005213 +5 + chr7 150040521 150040654 chr7,150040117,150040718,-,HERVE-int,LTR,ERV1,-3967,3846,3249,150036150,150043966 -1 - chr7 150041363 150041461 chr7,150040867,150041464,-,HERVE-int,LTR,ERV1,-3970,3843,3249,150036897,150044712 -1 - chr7 150074201 150074376 chr7,150074201,150074792,-,MER77,LTR,ERVL,0,604,1,150074201,150074792 -5 - chr7 150341771 150341821 chr7,150341764,150341821,+,(CCCT)n,Simple_repeat,Simple_repeat,1,58,0,150341764,150341821 +1 + chr7 150342493 150342607 chr7,150342493,150342629,+,MIRb,SINE,MIR,102,234,-34,150342392,150342663 +5 + chr7 150379854 150379874 chr7,150379769,150379874,+,L2c,LINE,L2,3264,3381,-6,150376506,150379880 -5 + chr7 150433654 150433743 chr7,150433631,150433743,-,CR1_Mam,LINE,CR1,-74,2130,2016,150433557,150435758 -1 - chr7 150433805 150433829 chr7,150433805,150433891,-,MIRb,SINE,MIR,-73,195,107,150433732,150433997 -4 - chr7 150435030 150435157 chr7,150435008,150435178,-,FRAM,SINE,Alu,-10,166,1,150434998,150435178 -3 - chr7 150446808 150446854 chr7,150446808,150446854,+,(ACC)n,Simple_repeat,Simple_repeat,1,46,0,150446808,150446854 +6 + chr7 150447330 150447491 chr7,150447330,150447491,-,AluSz,SINE,Alu,-130,182,22,150447200,150447512 -6 - chr7 150447609 150447745 chr7,150447609,150447745,-,Zaphod2,DNA,hAT-Tip100,-3327,197,47,150444282,150447791 -6 - chr7 150447792 150448103 chr7,150447792,150448103,-,AluSx,SINE,Alu,-4,308,1,150447788,150448103 -6 - chr7 151029041 151029125 chr7,151029041,151029319,+,AluSz6,SINE,Alu,1,300,-12,151029041,151029331 -2 + chr7 151029589 151029754 chr7,151029524,151029806,-,AluSx,SINE,Alu,-30,282,1,151029494,151029806 +1 - chr7 151240717 151240968 chr7,151240717,151240968,+,MIR,SINE,MIR,2,262,0,151240716,151240968 +6 + chr7 151254363 151254390 chr7,151254363,151254485,+,MIRc,SINE,MIR,50,175,-93,151254314,151254578 +5 + chr7 151409183 151409247 chr7,151409183,151409247,+,(CCTCAC)n,Simple_repeat,Simple_repeat,1,64,0,151409183,151409247 +1 + chr7 151412719 151412739 chr7,151412665,151412739,-,L2b,LINE,L2,-25,3350,3272,151412640,151416010 -2 - chr7 151412895 151413048 chr7,151412895,151413241,+,MER47A,DNA,TcMar-Tigger,20,366,0,151412876,151413241 +5 + chr7 151427833 151427877 chr7,151427833,151427877,+,(CCT)n,Simple_repeat,Simple_repeat,1,44,0,151427833,151427877 +6 + chr7 151806490 151806547 chr7,151806381,151806547,+,Charlie19a,DNA,hAT-Charlie,43,218,-168,151806339,151806715 +1 + chr7 151806685 151806943 chr7,151806685,151806943,+,AluSz6,SINE,Alu,1,260,-52,151806685,151806995 +6 + chr7 151877465 151877532 chr7,151877457,151877532,+,(CGC)n,Simple_repeat,Simple_repeat,1,78,0,151877457,151877532 +1 + chr7 151877791 151877824 chr7,151877791,151877824,+,(CCACC)n,Simple_repeat,Simple_repeat,1,33,0,151877791,151877824 +6 + chr7 151950386 151950913 chr7,151950012,151951420,+,ERV3-16A3_I-int,LTR,ERVL,1840,3271,-1955,151948173,151953375 -5 + chr7 152120106 152120203 chr7,152120106,152120203,-,MER3,DNA,hAT-Charlie,-96,113,15,152120010,152120217 +6 - chr7 152464191 152464299 chr7,152464191,152464299,+,(GCCGGCC)n,Simple_repeat,Simple_repeat,1,111,0,152464191,152464299 +6 + chr7 153400285 153400481 chr7,153400285,153400481,-,LTR78,LTR,ERV1,-108,1196,1002,153400177,153401482 +6 - chr7 153411234 153411475 chr7,153409397,153413807,-,HERV-Fc1-int,LTR,ERV1,-176,4453,1,153409221,153413807 +1 - chr7 153411582 153413807 chr7,153409397,153413807,-,HERV-Fc1-int,LTR,ERV1,-176,4453,1,153409221,153413807 +1 - chr7 153413807 153413963 chr7,153413807,153414153,-,HERV-Fc1_LTR1,LTR,ERV1,0,346,1,153413807,153414153 +1 - chr7 154026287 154026454 chr7,154025870,154026454,+,MER77,LTR,ERVL,1,596,-8,154025870,154026462 -5 + chr7 154057433 154058031 chr7,154057429,154058031,+,HERVE-int,LTR,ERV1,3249,3846,-3967,154054181,154061998 -4 + chr7 154058657 154058734 chr7,154058657,154058734,+,HERVE-int,LTR,ERV1,3243,3319,-4528,154055415,154063262 -6 + chr7 154058748 154058951 chr7,154058748,154058951,-,SATR1,Satellite,Satellite,-84,339,141,154058664,154059091 +6 - chr7 154059367 154059561 chr7,154059367,154059965,+,HERVE-int,LTR,ERV1,3249,3846,-3967,154056119,154063932 -1 + chr7 154092201 154092917 chr7,154092113,154092921,-,L1MC4,LINE,L1,-2,8040,7118,154092111,154100038 +5 - chr7 154928498 154928743 chr7,154925106,154928743,-,ERV24B_Prim-int,LTR,ERV1,-1815,3679,23,154923291,154928765 -1 - chr7 154928746 154928767 chr7,154928746,154929139,-,LTR48,LTR,ERV1,-296,491,1,154928450,154929139 -4 - chr7 154928956 154929024 chr7,154928746,154929139,-,LTR48,LTR,ERV1,-296,491,1,154928450,154929139 -3 - chr7 154944979 154945280 chr7,154944979,154945280,-,AluSq2,SINE,Alu,-5,308,1,154944974,154945280 -6 - chr7 154945380 154945398 chr7,154945380,154945439,+,A-rich,Low_complexity,Low_complexity,1,65,0,154945380,154945439 +5 + chr7 154949619 154949908 chr7,154949619,154949922,+,AluSx1,SINE,Alu,3,296,-16,154949617,154949938 +5 + chr7 154951226 154951259 chr7,154951220,154951259,+,L1MC1,LINE,L1,6114,6153,-180,154945107,154951439 +1 + chr7 154951263 154951492 chr7,154951263,154951492,+,L1MC1,LINE,L1,6114,6333,0,154945150,154951492 +6 + chr7 154956875 154957021 chr7,154956875,154957021,+,Charlie15a,DNA,hAT-Charlie,37,189,-35,154956839,154957056 +6 + chr7 155003448 155003487 chr7,155003418,155003487,+,G-rich,Low_complexity,Low_complexity,1,71,0,155003418,155003487 +1 + chr7 155004299 155004600 chr7,155004299,155004600,+,AluSx3,SINE,Alu,1,301,-10,155004299,155004610 +6 + chr7 155004957 155005091 chr7,155004957,155005091,+,Tigger4b,DNA,TcMar-Tigger,2,140,-221,155004956,155005312 +6 + chr7 155005091 155005216 chr7,155005091,155005216,+,FLAM_A,SINE,Alu,1,129,-13,155005091,155005229 +6 + chr7 155005249 155005480 chr7,155005249,155005480,+,Tigger4b,DNA,TcMar-Tigger,126,361,0,155005124,155005480 +6 + chr7 155067067 155067474 chr7,155066943,155067474,-,Charlie1,DNA,hAT-Charlie,0,2781,2206,155066943,155069679 +5 - chr7 155067475 155067727 chr7,155067475,155067727,+,AluSz,SINE,Alu,1,300,-12,155067475,155067739 -6 + chr7 155067750 155068016 chr7,155067750,155068016,+,L4_A_Mam,LINE,RTE-X,3576,3867,-1123,155064175,155069139 -6 + chr7 155068027 155068422 chr7,155068027,155068422,-,MLT1B,LTR,ERVL-MaLR,0,390,21,155068027,155068442 +6 - chr7 155196563 155196875 chr7,155196523,155196875,-,L1MEf,LINE,L1,-5839,801,514,155190684,155197388 +5 - chr7 155196887 155196987 chr7,155196887,155197368,-,L1MEf,LINE,L1,-5847,793,29,155191040,155197396 +2 - chr7 155197262 155197368 chr7,155196887,155197368,-,L1MEf,LINE,L1,-5847,793,29,155191040,155197396 +4 - chr7 155205040 155205189 chr7,155204984,155205258,+,Charlie1a,DNA,hAT-Charlie,1043,1348,-107,155203942,155205365 +5 + chr7 155222903 155222934 chr7,155222783,155222934,+,L3,LINE,CR1,3921,4075,-24,155218863,155222958 +1 + chr7 155223514 155223851 chr7,155223514,155223968,+,MER4C,LTR,ERV1,2,465,0,155223513,155223968 +5 + chr7 155267528 155267630 chr7,155267514,155267630,-,MLT1C,LTR,ERVL-MaLR,-3,464,349,155267511,155267978 -2 - chr7 155297433 155297493 chr7,155297433,155297493,+,G-rich,Low_complexity,Low_complexity,1,61,0,155297433,155297493 -6 + chr7 155382076 155382182 chr7,155381996,155382182,+,(CGTGTG)n,Simple_repeat,Simple_repeat,1,192,0,155381996,155382182 +1 + chr7 155395316 155395488 chr7,155395316,155395488,-,MIRc,SINE,MIR,-87,181,2,155395229,155395489 -6 - chr7 155396142 155396238 chr7,155396142,155396238,+,L2a,LINE,L2,3315,3408,-18,155392828,155396256 +6 + chr7 155396238 155396356 chr7,155396238,155396545,+,AluJb,SINE,Alu,5,297,-15,155396234,155396560 +5 + chr7 155399922 155400026 chr7,155399878,155400026,+,MIR,SINE,MIR,11,184,-78,155399868,155400104 +1 + chr7 155400548 155400743 chr7,155400548,155400743,-,MIRb,SINE,MIR,-39,229,32,155400509,155400774 -6 - chr7 155401127 155401168 chr7,155401127,155401168,+,(TGACTG)n,Simple_repeat,Simple_repeat,1,44,0,155401127,155401168 +6 + chr7 155642264 155642356 chr7,155642255,155642356,+,LTR87,LTR,ERVL?,396,500,-124,155641860,155642480 -5 + chr7 155642356 155642656 chr7,155642356,155642656,-,AluSq2,SINE,Alu,-13,300,1,155642343,155642656 +6 - chr7 155642656 155642786 chr7,155642656,155642786,+,LTR87,LTR,ERVL?,501,624,0,155642156,155642786 -6 + chr7 155642804 155642869 chr7,155642804,155642869,+,Charlie7a,DNA,hAT-Charlie,199,267,-5,155642606,155642874 -6 + chr7 155643151 155643448 chr7,155643151,155643448,-,AluSg,SINE,Alu,-13,297,1,155643138,155643448 +5 - chr7 155962632 155962879 chr7,155962475,155962879,-,L2c,LINE,L2,-4,3383,2926,155962471,155965804 -1 - chr7 155962940 155963017 chr7,155962940,155963017,+,MADE2,DNA,TcMar-Mariner,2,78,-2,155962939,155963019 +6 + chr7 155965947 155966343 chr7,155965947,155967286,+,L1M3,LINE,L1,4393,5752,-419,155961555,155967705 +5 + chr7 156432571 156432725 chr7,156432571,156432725,+,MLT2B4,LTR,ERVL,553,714,-4,156432019,156432729 -6 + chr7 156432850 156432879 chr7,156432850,156432979,+,Charlie18a,DNA,hAT-Charlie,34,170,-172,156432817,156433151 -2 + chr7 156437796 156437863 chr7,156437796,156437863,-,L2a,LINE,L2,0,3426,3359,156437796,156441221 +6 - chr7 156438883 156438995 chr7,156438883,156439203,+,AluJb,SINE,Alu,1,309,-3,156438883,156439206 -2 + chr7 156444452 156444557 chr7,156444452,156444557,+,MIR3,SINE,MIR,39,149,-59,156444414,156444616 -6 + chr7 156445230 156445588 chr7,156445230,156445618,-,MLT1C,LTR,ERVL-MaLR,0,467,21,156445230,156445638 +1 - chr7 156472503 156472583 chr7,156472503,156472583,+,L2b,LINE,L2,3293,3373,-2,156469211,156472585 -6 + chr7 156584361 156584515 chr7,156584361,156584515,+,L2c,LINE,L2,3222,3376,-50,156581140,156584565 -6 + chr7 156638535 156638591 chr7,156638535,156638591,-,MIRb,SINE,MIR,-39,229,174,156638496,156638764 +6 - chr7 156638626 156638686 chr7,156638626,156638686,-,MLT1K,LTR,ERVL-MaLR,-13,582,524,156638613,156639209 +6 - chr7 156639071 156639189 chr7,156639071,156639189,-,MIRb,SINE,MIR,-110,158,35,156638961,156639223 +6 - chr7 156639457 156639597 chr7,156639457,156639597,+,L1MEc,LINE,L1,37,188,-6212,156639421,156645809 -6 + chr7 156640630 156640654 chr7,156640630,156640686,+,G-rich,Low_complexity,Low_complexity,1,57,0,156640630,156640686 -1 + chr7 156654185 156654441 chr7,156654135,156654441,+,MER2,DNA,TcMar-Tigger,1,344,-1,156654135,156654442 -5 + chr7 156945366 156945390 chr7,156945306,156945390,+,MLT1J,LTR,ERVL-MaLR,1,85,-427,156945306,156945817 +2 + chr7 156945490 156945645 chr7,156945490,156945683,+,L1ME4b,LINE,L1,4472,4649,-1497,156941019,156947180 +5 + chr7 157006307 157006335 chr7,157006232,157006335,+,MER5A,DNA,hAT-Charlie,7,114,-75,157006226,157006410 +1 + chr7 157006985 157007128 chr7,157006985,157007128,+,FRAM,SINE,Alu,33,175,-1,157006953,157007129 +6 + chr7 157109980 157110122 chr7,157109947,157110122,-,AluSx,SINE,Alu,-1,311,137,157109946,157110258 -1 - chr7 157110347 157110465 chr7,157110347,157110465,+,MER4CL34,LTR,ERV1,1,140,-625,157110347,157111090 +6 + chr7 157110458 157110526 chr7,157110458,157110526,+,MER4CL34,LTR,ERV1,434,496,-269,157110025,157110795 +6 + chr7 157110526 157110833 chr7,157110526,157110833,-,AluSz,SINE,Alu,-8,304,1,157110518,157110833 -6 - chr7 157110833 157111072 chr7,157110833,157111088,+,MER4CL34,LTR,ERV1,497,765,0,157110337,157111088 +5 + chr7 157282561 157282674 chr7,157282561,157282674,+,L2c,LINE,L2,3262,3385,-2,157279300,157282676 -6 + chr7 157468124 157468229 chr7,157468124,157468229,+,MER5C1,DNA,hAT-Charlie,116,224,-39,157468009,157468268 +6 + chr7 157470869 157470920 chr7,157470853,157470920,-,MIR1_Amn,SINE,MIR,-77,153,86,157470776,157471005 -2 - chr7 157499537 157499653 chr7,157499537,157499653,+,MIRc,SINE,MIR,68,186,-82,157499470,157499735 +6 + chr7 157502984 157503017 chr7,157502749,157503017,+,MLT1J2,LTR,ERVL-MaLR,156,415,-33,157502594,157503050 +2 + chr7 157503352 157503442 chr7,157503303,157503442,-,L2b,LINE,L2,0,3426,3264,157503303,157506705 -2 - chr7 157503563 157503577 chr7,157503563,157503773,+,MIRb,SINE,MIR,3,236,-32,157503561,157503805 +5 + chr7 157525838 157526567 chr7,157525838,157526567,+,L1MA5,LINE,L1,5513,6295,-5,157520326,157526572 +6 + chr7 157615574 157615711 chr7,157615574,157615711,+,L3,LINE,CR1,3111,3242,-857,157612464,157616568 +6 + chr7 157617825 157617876 chr7,157617825,157617876,+,(TC)n,Simple_repeat,Simple_repeat,1,53,0,157617825,157617876 +6 + chr7 157739010 157739179 chr7,157738999,157739179,-,MIRc,SINE,MIR,-7,261,80,157738992,157739258 +5 - chr7 157855927 157856130 chr7,157855755,157856839,-,Charlie7,DNA,hAT-Charlie,-152,2460,1246,157855603,157858084 -3 - chr7 157862808 157862857 chr7,157862808,157862857,+,G-rich,Low_complexity,Low_complexity,1,53,0,157862808,157862857 +6 + chr7 157863615 157863989 chr7,157863615,157863989,+,MLT1B,LTR,ERVL-MaLR,1,390,0,157863615,157863989 +6 + chr7 157868661 157868714 chr7,157868661,157868714,+,(CCCT)n,Simple_repeat,Simple_repeat,1,53,0,157868661,157868714 +6 + chr7 157869028 157869154 chr7,157869028,157869205,-,MamTip1,DNA,hAT-Tip100,-55,212,27,157868973,157869231 -5 - chr7 158028297 158028346 chr7,158028297,158028346,+,(GCAGAA)n,Simple_repeat,Simple_repeat,1,49,0,158028297,158028346 +6 + chr7 158030415 158030774 chr7,158030415,158030774,+,MLT1C,LTR,ERVL-MaLR,12,373,-94,158030404,158030868 +6 + chr7 159016458 159016683 chr7,159015973,159016683,+,LTR39,LTR,ERV1,1,758,-25,159015973,159016708 +2 + chr7 159016683 159016750 chr7,159016683,159016750,+,LTR39,LTR,ERV1,691,758,-25,159015993,159016775 +6 + chr7 159016807 159016856 chr7,159016807,159016856,+,LTR39,LTR,ERV1,691,739,-44,159016117,159016900 +6 + chr7 159017202 159017295 chr7,159017202,159017295,+,LTR39,LTR,ERV1,690,783,0,159016513,159017295 +6 + chr7 159020307 159020483 chr7,159019863,159020483,-,L1M5,LINE,L1,-3097,3049,2397,159016766,159022879 -2 - chr7 159021673 159021951 chr7,159021648,159021951,-,AluSx,SINE,Alu,-11,301,3,159021637,159021953 -2 - chr7 159027738 159027803 chr7,159027738,159027803,+,(CA)n,Simple_repeat,Simple_repeat,1,66,0,159027738,159027803 +6 + chr7 159030064 159030195 chr7,159030064,159030364,+,AluY,SINE,Alu,1,303,-8,159030064,159030372 +5 + chr8 79138 79319 chr8,79138,79319,-,L1M5,LINE,L1,-340,5784,5606,78798,84924 -5 - chr8 79409 79775 chr8,79409,79878,+,Ricksha_0,DNA,MULE-MuDR,1325,1732,-1,78085,79879 +5 + chr8 330296 330332 chr8,330296,330900,+,HAL1,LINE,L1,1871,2491,-16,328426,330916 -2 + chr8 330880 330900 chr8,330296,330900,+,HAL1,LINE,L1,1871,2491,-16,328426,330916 -4 + chr8 331009 331026 chr8,331009,331254,-,MIR,SINE,MIR,-23,245,1,330986,331254 +1 - chr8 375931 376037 chr8,375819,376037,-,MER44D,DNA,TcMar-Tigger,-477,228,11,375342,376047 +5 - chr8 376590 376702 chr8,376590,376702,-,MLT1I,LTR,ERVL-MaLR,-173,238,118,376417,376819 +6 - chr8 376977 377139 chr8,376977,377139,-,MER102a,DNA,hAT-Charlie,-65,265,94,376912,377232 +6 - chr8 377564 377725 chr8,377564,377725,+,MER58A,DNA,hAT-Charlie,1,173,-51,377564,377776 -6 + chr8 379336 379418 chr8,379336,379418,-,MIRc,SINE,MIR,-7,261,177,379329,379594 +6 - chr8 379434 379530 chr8,379434,379530,-,Kanga1c,DNA,TcMar-Tc2,-4,725,631,379430,380160 +6 - chr8 379553 379628 chr8,379553,379628,-,MIR1_Amn,SINE,MIR,-68,162,66,379485,379693 +6 - chr8 383060 383126 chr8,383014,383126,+,L1M5,LINE,L1,5605,5715,-527,377410,383653 -4 + chr8 450736 451197 chr8,450736,451197,-,L1MB3,LINE,L1,-1,6182,5738,450735,456934 +6 - chr8 488461 488512 chr8,488461,488520,-,Tigger14a,DNA,TcMar-Tigger,-112,212,152,488349,488671 +1 - chr8 725839 725877 chr8,725839,725888,+,(ATTC)n,Simple_repeat,Simple_repeat,1,50,0,725839,725888 -1 + chr8 737676 737718 chr8,737676,737718,+,(CGGA)n,Simple_repeat,Simple_repeat,1,45,0,737676,737718 +6 + chr8 1002113 1002186 chr8,1002010,1002186,-,MIR,SINE,MIR,-20,242,56,1001990,1002241 -2 - chr8 1137299 1137375 chr8,1137022,1137375,-,MLT1B,LTR,ERVL-MaLR,-43,347,1,1136979,1137375 -2 - chr8 1250392 1250473 chr8,1250392,1250473,+,L2a,LINE,L2,3339,3421,-5,1247054,1250478 +6 + chr8 1299925 1300174 chr8,1299847,1300174,-,MLT1A,LTR,ERVL-MaLR,0,374,1,1299847,1300174 +4 - chr8 1300808 1300842 chr8,1300808,1300842,+,(TGTTGCA)n,Simple_repeat,Simple_repeat,1,38,0,1300808,1300842 -6 + chr8 1369178 1369500 chr8,1369178,1369500,-,MLT1B,LTR,ERVL-MaLR,-1,389,1,1369177,1369500 +6 - chr8 1604552 1604563 chr8,1604397,1604563,+,MER5A,DNA,hAT-Charlie,4,167,-22,1604394,1604585 -5 + chr8 1619699 1619860 chr8,1619642,1619860,-,MIR,SINE,MIR,-10,252,4,1619632,1619863 +4 - chr8 1761990 1762159 chr8,1761624,1762159,-,LTR8,LTR,ERV1,-157,534,1,1761467,1762159 +5 - chr8 1762176 1762355 chr8,1762176,1762355,-,AluSq2,SINE,Alu,-3,310,129,1762173,1762483 +6 - chr8 1762357 1762399 chr8,1762357,1762399,-,AluYm1,SINE,Alu,-266,45,4,1762091,1762402 +6 - chr8 1762401 1762465 chr8,1762401,1762465,-,MER41D,LTR,ERV1,-495,62,1,1761906,1762465 +6 - chr8 1762681 1762751 chr8,1762681,1762751,-,MIRc,SINE,MIR,-65,203,128,1762616,1762878 +6 - chr8 1762866 1762928 chr8,1762866,1762960,-,L2a,LINE,L2,-5,3421,3332,1762861,1766291 +2 - chr8 1763287 1763297 chr8,1763287,1763324,+,(GCC)n,Simple_repeat,Simple_repeat,1,457,0,1763287,1763324 -1 + chr8 1972570 1972663 chr8,1972380,1972690,+,AluSz,SINE,Alu,1,308,-4,1972380,1972694 -5 + chr8 1973489 1973579 chr8,1973489,1973579,+,G-rich,Low_complexity,Low_complexity,1,91,0,1973489,1973579 -6 + chr8 1974607 1974636 chr8,1974579,1974636,+,(CCCCGAG)n,Simple_repeat,Simple_repeat,1,61,0,1974579,1974636 -4 + chr8 2589985 2590113 chr8,2589895,2590113,-,LTR24,LTR,ERV1,0,467,247,2589895,2590359 +5 - chr8 2590123 2590408 chr8,2590123,2590408,+,L1MC,LINE,L1,4723,5006,-1140,2585401,2591548 -6 + chr8 2590984 2591249 chr8,2590984,2591272,+,AluSx1,SINE,Alu,1,302,-10,2590984,2591282 -2 + chr8 2595565 2595582 chr8,2595503,2595582,-,LTR40a,LTR,ERVL,0,462,381,2595503,2595962 +4 - chr8 2623366 2623382 chr8,2623366,2623432,+,(GAGCGCT)n,Simple_repeat,Simple_repeat,1,68,0,2623366,2623432 -1 + chr8 2678857 2678903 chr8,2678597,2678903,-,AluY,SINE,Alu,-1,310,5,2678596,2678907 +4 - chr8 2696862 2696955 chr8,2696862,2696955,+,MLT1G,LTR,ERVL-MaLR,39,133,-462,2696824,2697417 -6 + chr8 2701482 2701510 chr8,2701482,2701510,+,(AAAT)n,Simple_repeat,Simple_repeat,1,29,0,2701482,2701510 -6 + chr8 2705215 2705286 chr8,2705139,2705365,+,MIRc,SINE,MIR,34,268,0,2705106,2705365 -3 + chr8 2727318 2727484 chr8,2726965,2727484,+,L1PBa1,LINE,L1,2,542,-6070,2726964,2733554 +1 + chr8 2728330 2728451 chr8,2728201,2728557,+,LTR12C,LTR,ERV1,804,1131,-123,2727398,2728680 -1 + chr8 2822394 2822482 chr8,2822389,2822679,+,AluSx,SINE,Alu,3,298,-14,2822387,2822693 +5 + chr8 5506131 5507168 chr8,5506131,5507168,-,L1ME1,LINE,L1,-4552,1690,655,5501579,5507822 +6 - chr8 5507274 5507746 chr8,5507274,5507746,-,L1ME1,LINE,L1,-5621,515,68,5501653,5507813 +6 - chr8 5507868 5508358 chr8,5507868,5508358,-,L1MEd,LINE,L1,-6592,494,3,5501276,5508360 +6 - chr8 5508536 5508676 chr8,5508536,5508676,-,MIR,SINE,MIR,-18,244,84,5508518,5508759 +6 - chr8 5508920 5509032 chr8,5508920,5509032,+,MLT1G3,LTR,ERVL-MaLR,1,116,-479,5508920,5509511 -6 + chr8 5509107 5509126 chr8,5509107,5509294,+,MLT1G3,LTR,ERVL-MaLR,403,592,-3,5508705,5509297 -1 + chr8 5659679 5659689 chr8,5659641,5659689,+,(AATA)n,Simple_repeat,Simple_repeat,1,50,0,5659641,5659689 -5 + chr8 5664732 5665087 chr8,5664732,5665087,+,THE1D,LTR,ERVL-MaLR,8,381,0,5664725,5665087 -6 + chr8 5665103 5665189 chr8,5665103,5665251,-,MER5A,DNA,hAT-Charlie,-34,155,1,5665069,5665251 +2 - chr8 6044353 6044525 chr8,6044194,6045582,-,LTR12C,LTR,ERV1,0,1579,2,6044194,6045583 +5 - chr8 6100328 6100451 chr8,6100289,6100657,-,MLT1J2,LTR,ERVL-MaLR,-54,394,3,6100235,6100659 +3 - chr8 6257412 6257537 chr8,6257331,6257720,-,MSTA,LTR,ERVL-MaLR,-2,426,1,6257329,6257720 +1 - chr8 6403606 6403696 chr8,6403606,6403696,+,MER34A,LTR,ERV1,474,565,-6,6403133,6403702 -6 + chr8 6403743 6403882 chr8,6403743,6403882,+,L1M5,LINE,L1,4266,4415,-1731,6399478,6405613 -6 + chr8 6403882 6404192 chr8,6403882,6404192,+,AluJr,SINE,Alu,7,312,0,6403876,6404192 -6 + chr8 6404192 6404248 chr8,6404192,6404248,+,L1M5,LINE,L1,4416,4475,-1671,6399777,6405919 -6 + chr8 6404248 6404533 chr8,6404248,6404533,-,AluY,SINE,Alu,-18,293,1,6404230,6404533 +6 - chr8 6404533 6405022 chr8,6404533,6405022,+,L1M5,LINE,L1,4476,4989,-1157,6400058,6406179 -6 + chr8 6405035 6405120 chr8,6405035,6405142,+,AluJb,SINE,Alu,195,301,-11,6404841,6405153 -2 + chr8 6405680 6405729 chr8,6405680,6405729,+,MIRc,SINE,MIR,69,117,-151,6405612,6405880 -6 + chr8 6615642 6615714 chr8,6615642,6615714,-,L1ME1,LINE,L1,-35,6144,6070,6615607,6621783 +6 - chr8 6615972 6616028 chr8,6615972,6616028,+,L1MB7,LINE,L1,6064,6121,-63,6609909,6616091 -6 + chr8 6616890 6617198 chr8,6616890,6617250,+,LTR37A,LTR,ERV1,1,399,-27,6616890,6617277 -1 + chr8 6618538 6618559 chr8,6618538,6618559,+,(TG)n,Simple_repeat,Simple_repeat,1,22,0,6618538,6618559 -6 + chr8 6618713 6619167 chr8,6618713,6619167,-,MLT1L,LTR,ERVL-MaLR,-2,608,110,6618711,6619276 +6 - chr8 6634842 6635419 chr8,6633450,6635431,+,Tigger4,DNA,TcMar-Tigger,1,2031,-700,6633450,6636131 -5 + chr8 6646055 6646143 chr8,6645456,6646143,+,L1ME1,LINE,L1,4096,4760,-1386,6641361,6647529 +1 + chr8 6646143 6646352 chr8,6646143,6646352,+,AluSz,SINE,Alu,2,212,-100,6646142,6646452 +6 + chr8 6646352 6646606 chr8,6646352,6646606,+,L1ME1,LINE,L1,4761,5005,-1141,6641592,6647747 +6 + chr8 6646606 6646832 chr8,6646606,6646832,-,MER20,DNA,hAT-Charlie,0,219,1,6646606,6646832 -6 - chr8 6646832 6647932 chr8,6646832,6647932,+,L1ME1,LINE,L1,5006,6179,0,6641827,6647932 +6 + chr8 6647958 6648389 chr8,6647958,6648389,+,ERV3-16A3_LTR,LTR,ERVL,3,420,-2,6647956,6648391 +6 + chr8 6648283 6648389 chr8,6647958,6648389,+,ERV3-16A3_LTR,LTR,ERVL,3,420,-2,6647956,6648391 -4 + chr8 6648594 6648807 chr8,6648594,6648969,-,LTR10A,LTR,ERV1,-64,545,173,6648530,6649141 +1 - chr8 6836135 6836182 chr8,6836135,6836182,+,(AT)n,Simple_repeat,Simple_repeat,1,47,0,6836135,6836182 +6 + chr8 6836196 6836221 chr8,6836196,6836677,-,MER31B,LTR,ERV1,-11,455,1,6836185,6836677 -4 - chr8 6841668 6841745 chr8,6841565,6841745,+,L2a,LINE,L2,3184,3404,-22,6838382,6841767 +2 + chr8 6930340 6930473 chr8,6930160,6930521,+,MLT1A0,LTR,ERVL-MaLR,2,363,-2,6930159,6930523 +5 + chr8 7302149 7302171 chr8,7302149,7302252,+,(AAT)n,Simple_repeat,Simple_repeat,1,104,0,7302149,7302252 -2 + chr8 7319232 7319302 chr8,7319232,7319302,+,GA-rich,Low_complexity,Low_complexity,1,70,0,7319232,7319302 -6 + chr8 7984265 7984392 chr8,7982315,7984392,-,L1PA8A,LINE,L1,-362,5769,3697,7981953,7988088 -2 - chr8 8008195 8008216 chr8,8008113,8008216,+,(TTA)n,Simple_repeat,Simple_repeat,1,104,0,8008113,8008216 +2 + chr8 8167819 8167933 chr8,8167781,8167933,-,MER5A1,DNA,hAT-Charlie,-1,165,15,8167780,8167947 +5 - chr8 8189018 8189074 chr8,8189018,8189074,-,MER5B,DNA,hAT-Charlie,-81,97,43,8188937,8189116 +6 - chr8 8189075 8189195 chr8,8189075,8189207,+,FLAM_A,SINE,Alu,1,132,-10,8189075,8189217 -1 + chr8 8220044 8220107 chr8,8218718,8220107,+,LTR12C,LTR,ERV1,3,1579,0,8218716,8220107 -4 + chr8 8220107 8220143 chr8,8220107,8220143,+,MER66B,LTR,ERV1,454,486,0,8219654,8220143 -6 + chr8 8220143 8220182 chr8,8220143,8220201,+,AluYk3,SINE,Alu,243,297,-14,8219901,8220215 -2 + chr8 8223826 8223887 chr8,8223792,8224011,+,MIR,SINE,MIR,29,262,0,8223764,8224011 -3 + chr8 8414690 8415040 chr8,8414432,8415040,-,L1P2,LINE,L1,-4492,1692,1085,8409940,8416124 +5 - chr8 8422424 8423013 chr8,8422388,8423121,-,L1MC3,LINE,L1,-487,7298,6524,8421901,8429644 +5 - chr8 8424488 8424522 chr8,8424451,8424522,-,L2b,LINE,L2,-1,3374,3309,8424450,8427830 +4 - chr8 8456909 8457082 chr8,8456754,8457122,-,L1PA8,LINE,L1,-2,6170,5803,8456752,8462924 +5 - chr8 8458409 8458526 chr8,8458250,8458545,+,AluJo,SINE,Alu,1,294,-18,8458250,8458563 -3 + chr8 8559894 8559993 chr8,8559530,8559993,+,L1MB5,LINE,L1,5270,5741,-433,8554261,8560426 +1 + chr8 8559993 8560043 chr8,8559993,8560291,+,AluY,SINE,Alu,2,298,-13,8559992,8560304 +4 + chr8 8560920 8560965 chr8,8560647,8561065,+,L1MB5,LINE,L1,5766,6174,0,8554882,8561065 -1 + chr8 8561886 8561952 chr8,8561886,8561952,+,MLT1N2,LTR,ERVL-MaLR,496,561,-1,8561391,8561953 +6 + chr8 8569538 8569688 chr8,8569538,8570062,-,MER34,LTR,ERV1,-3,539,4,8569535,8570065 -5 - chr8 8751374 8751498 chr8,8751373,8751583,+,MIR,SINE,MIR,12,230,0,8751362,8751583 -5 + chr8 8754000 8754108 chr8,8753836,8754150,+,AluJr,SINE,Alu,1,298,-14,8753836,8754164 -3 + chr8 8781302 8781435 chr8,8780710,8781954,-,LTR12C,LTR,ERV1,0,1579,3,8780710,8781956 +1 - chr8 8782193 8782479 chr8,8782193,8782862,+,MER50,LTR,ERV1,1,711,-23,8782193,8782885 -1 + chr8 9142283 9142373 chr8,9142109,9142382,-,AluJr,SINE,Alu,-24,288,14,9142085,9142395 -3 - chr8 9145251 9145435 chr8,9145214,9145654,+,Tigger2a,DNA,TcMar-Tigger,3,434,0,9145212,9145654 +5 + chr8 9154206 9154343 chr8,9153426,9154908,-,SVA_F,Retroposon,SVA,-22,1353,11,9153404,9154918 -3 - chr8 9155008 9155114 chr8,9155008,9155114,-,L2c,LINE,L2,0,3387,3282,9155008,9158395 -6 - chr8 9156152 9156363 chr8,9156148,9156397,-,Tigger2a,DNA,TcMar-Tigger,0,434,186,9156148,9156582 -5 - chr8 9180251 9180280 chr8,9180209,9180280,-,L1M5,LINE,L1,-279,5845,5773,9179930,9186052 +5 - chr8 9182464 9182519 chr8,9182454,9182529,+,MIRc,SINE,MIR,73,150,-118,9182382,9182647 -1 + chr8 9189011 9189046 chr8,9188663,9189149,+,MER50B,LTR,ERV1,1,505,-192,9188663,9189341 +1 + chr8 9189346 9189462 chr8,9189149,9189462,-,AluYm1,SINE,Alu,-4,307,2,9189145,9189463 -1 - chr8 9189462 9189586 chr8,9189462,9189625,+,MER50B,LTR,ERV1,506,696,-1,9188957,9189626 +1 + chr8 9202392 9202490 chr8,9202138,9202924,+,LTR39,LTR,ERV1,1,783,0,9202138,9202924 +5 + chr8 9202499 9202854 chr8,9202138,9202924,+,LTR39,LTR,ERV1,1,783,0,9202138,9202924 +5 + chr8 9249417 9249524 chr8,9249335,9249524,+,LTR2C,LTR,ERV1,315,501,0,9249021,9249524 +1 + chr8 9249524 9249599 chr8,9249524,9249599,+,LTR2C,LTR,ERV1,389,501,0,9249136,9249599 +1 + chr8 9249599 9249674 chr8,9249599,9249674,+,LTR2C,LTR,ERV1,389,501,0,9249211,9249674 +1 + chr8 9249674 9249940 chr8,9249674,9250815,+,HERVE-int,LTR,ERV1,1,1142,-6671,9249674,9257486 +4 + chr8 9260028 9260210 chr8,9260007,9260210,+,L2b,LINE,L2,2743,2964,-455,9257265,9260665 -4 + chr8 9260277 9260295 chr8,9260277,9260662,+,L2b,LINE,L2,3034,3384,-3,9257244,9260665 -1 + chr8 9319978 9320071 chr8,9319978,9320167,+,MIRc,SINE,MIR,9,203,-65,9319970,9320232 +4 + chr8 9325051 9325187 chr8,9325046,9325187,-,L2c,LINE,L2,0,3387,3256,9325046,9328442 -1 - chr8 9325269 9325289 chr8,9325269,9325289,+,(AG)n,Simple_repeat,Simple_repeat,1,20,0,9325269,9325289 +6 + chr8 9333436 9333944 chr8,9333436,9333944,-,L2a,LINE,L2,0,3426,2900,9333436,9336843 -6 - chr8 9333944 9334326 chr8,9333944,9334326,+,THE1B,LTR,ERVL-MaLR,1,364,0,9333944,9334326 +6 + chr8 9334326 9334377 chr8,9334326,9334377,-,L2a,LINE,L2,-520,2899,2853,9333806,9337229 -6 - chr8 9334772 9335080 chr8,9334772,9335129,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,9334772,9335129 +5 + chr8 9351254 9351281 chr8,9351254,9351281,+,GA-rich,Low_complexity,Low_complexity,1,27,0,9351254,9351281 -6 + chr8 9357602 9357751 chr8,9357557,9357777,-,L1MEd,LINE,L1,-5625,1478,1236,9351932,9359012 +3 - chr8 9358341 9358441 chr8,9358308,9358663,+,MLT1B,LTR,ERVL-MaLR,11,390,0,9358298,9358663 -1 + chr8 9361366 9361423 chr8,9361167,9361542,+,THE1C,LTR,ERVL-MaLR,1,375,0,9361167,9361542 +3 + chr8 9363262 9363373 chr8,9363051,9363373,-,AluJr,SINE,Alu,0,312,3,9363051,9363375 -2 - chr8 9367813 9367892 chr8,9367813,9368246,-,LTR47B2,LTR,ERVL,-1,433,2,9367812,9368247 -5 - chr8 9372855 9373106 chr8,9372695,9373136,+,LOR1b,LTR,ERV1,1,461,0,9372695,9373136 -3 + chr8 9383872 9384000 chr8,9383651,9384090,+,MSTB1,LTR,ERVL-MaLR,1,432,0,9383651,9384090 -3 + chr8 9403945 9404030 chr8,9403906,9404030,-,MIRb,SINE,MIR,-129,139,12,9403777,9404041 +4 - chr8 9436032 9436205 chr8,9436012,9436289,-,L2c,LINE,L2,-16,3371,2989,9435996,9439277 +1 - chr8 9555185 9555296 chr8,9555185,9555296,-,MIR,SINE,MIR,-104,158,40,9555081,9555335 +6 - chr8 9555420 9555524 chr8,9555420,9555524,-,MIRb,SINE,MIR,-15,253,130,9555405,9555653 +6 - chr8 9901960 9902004 chr8,9901960,9902004,+,L2b,LINE,L2,3322,3366,-9,9898639,9902013 -6 + chr8 9903143 9903192 chr8,9903143,9903192,+,(TCTGTT)n,Simple_repeat,Simple_repeat,1,49,0,9903143,9903192 -5 + chr8 9903480 9903526 chr8,9903480,9903526,+,GA-rich,Low_complexity,Low_complexity,1,46,0,9903480,9903526 -6 + chr8 10050485 10050728 chr8,10050319,10050728,-,L1M5,LINE,L1,-1462,4684,4249,10048857,10054976 +5 - chr8 10050730 10052092 chr8,10050730,10052092,+,MLT1J-int,LTR,ERVL-MaLR,29,1386,-1,10050702,10052093 -6 + chr8 10052219 10052451 chr8,10052219,10052451,+,MER1B,DNA,hAT-Charlie,119,339,0,10052101,10052451 -6 + chr8 10052880 10053168 chr8,10052880,10053168,-,AluJr,SINE,Alu,-18,294,6,10052862,10053173 +6 - chr8 10434051 10434436 chr8,10434051,10434436,-,L2b,LINE,L2,0,3375,3022,10434051,10437457 -6 - chr8 10434497 10435538 chr8,10434497,10435538,-,L1MC1,LINE,L1,0,6333,5313,10434497,10440850 -6 - chr8 10435786 10435802 chr8,10435786,10435802,-,L1MA10,LINE,L1,0,6334,6312,10435786,10442113 -6 - chr8 10435802 10436092 chr8,10435802,10436092,+,AluSz6,SINE,Alu,1,295,-17,10435802,10436109 +6 + chr8 10436092 10437285 chr8,10436092,10437285,-,L1ME1,LINE,L1,-25,6154,4897,10436067,10442181 -6 - chr8 10437285 10437649 chr8,10437285,10437649,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,10437285,10437649 +6 + chr8 10437649 10437819 chr8,10437649,10437819,-,L1ME1,LINE,L1,-1250,4896,4723,10436399,10442541 -6 - chr8 10438274 10438312 chr8,10438274,10438954,-,L1MEc,LINE,L1,-1403,4916,4229,10436871,10443182 -5 - chr8 10477605 10477729 chr8,10477605,10477729,+,MIRc,SINE,MIR,39,177,-91,10477567,10477820 -6 + chr8 10477839 10477898 chr8,10477839,10478072,-,MIR,SINE,MIR,-43,219,2,10477796,10478073 -1 - chr8 10480139 10480192 chr8,10480066,10480222,-,L2c,LINE,L2,-26,3361,3178,10480040,10483399 -3 - chr8 10480546 10480765 chr8,10480343,10480765,+,MLT1C,LTR,ERVL-MaLR,1,461,-6,10480343,10480771 +2 + chr8 10481861 10481974 chr8,10481765,10482157,+,L1ME1,LINE,L1,5663,6062,-117,10476103,10482274 +5 + chr8 10486807 10487565 chr8,10486611,10487565,+,ERVL-E-int,LTR,ERVL,4222,5176,-491,10482390,10488056 +1 + chr8 10487743 10488129 chr8,10487743,10488129,+,LTR16B1,LTR,ERVL,1,477,-3,10487743,10488132 +6 + chr8 10489129 10489357 chr8,10489129,10489357,-,L1ME3C,LINE,L1,-217,5945,5700,10488912,10495056 -6 - chr8 10489357 10489414 chr8,10489357,10489414,-,L1ME3C,LINE,L1,-424,5738,5682,10488933,10495095 -6 - chr8 10489462 10489581 chr8,10489462,10489581,-,Tigger3c,DNA,TcMar-Tigger,-24,578,452,10489438,10490032 -6 - chr8 10489582 10489637 chr8,10489582,10489637,-,Tigger3c,DNA,TcMar-Tigger,-542,60,6,10489040,10489642 -6 - chr8 10754202 10754318 chr8,10753855,10754681,+,L1ME1,LINE,L1,5279,6178,-1,10748577,10754682 +3 + chr8 10840576 10840628 chr8,10840539,10840664,+,L2c,LINE,L2,3266,3379,-8,10837274,10840672 +1 + chr8 10841654 10841734 chr8,10841654,10841753,-,MER5A1,DNA,hAT-Charlie,0,166,75,10841654,10841827 -4 - chr8 10858203 10858361 chr8,10858203,10858361,-,MIR3,SINE,MIR,-52,216,42,10858151,10858402 +6 - chr8 11062733 11063045 chr8,11062733,11063080,+,MLT1J2,LTR,ERVL-MaLR,1,392,-56,11062733,11063136 -2 + chr8 11104768 11104802 chr8,11104768,11104802,+,U2,snRNA,snRNA,1,34,-154,11104768,11104956 -6 + chr8 11106244 11106311 chr8,11106244,11106311,+,Tigger19b,DNA,TcMar-Tigger,58,126,-424,11106187,11106735 -6 + chr8 11106472 11106514 chr8,11106472,11106514,+,L2b,LINE,L2,3311,3352,-23,11103162,11106537 -6 + chr8 11106566 11106704 chr8,11106566,11106872,+,AluSx1,SINE,Alu,1,304,-8,11106566,11106880 -1 + chr8 11123750 11123780 chr8,11123750,11123780,+,(A)n,Simple_repeat,Simple_repeat,1,30,0,11123750,11123780 -6 + chr8 11123822 11124134 chr8,11123822,11124134,+,L2a,LINE,L2,3011,3310,-116,11120812,11124250 -6 + chr8 11124807 11124817 chr8,11124807,11125118,+,AluY,SINE,Alu,6,311,0,11124802,11125118 -2 + chr8 11125761 11126056 chr8,11125678,11126056,-,L3,LINE,CR1,-311,3788,3362,11125367,11129417 +4 - chr8 11203334 11203563 chr8,11203334,11203563,+,MIRb,SINE,MIR,34,268,0,11203301,11203563 +6 + chr8 11247626 11247789 chr8,11247342,11248213,+,MER97a,DNA,hAT-Tip100,1,881,-9,11247342,11248222 -5 + chr8 11317151 11317301 chr8,11317151,11317301,-,MIR3,SINE,MIR,-4,204,55,11317147,11317355 +6 - chr8 11317301 11317641 chr8,11317301,11317641,-,MER1B,DNA,hAT-Charlie,0,339,1,11317301,11317641 +6 - chr8 11317641 11317680 chr8,11317641,11317680,-,MIR3,SINE,MIR,-154,54,23,11317487,11317702 +6 - chr8 11318037 11318163 chr8,11318037,11318163,-,MER103C,DNA,hAT-Charlie,-138,159,27,11317899,11318189 +6 - chr8 11318201 11318350 chr8,11318201,11318350,+,MER117,DNA,hAT-Charlie,46,197,0,11318156,11318350 -6 + chr8 11318898 11319087 chr8,11318898,11319087,+,L1PB1,LINE,L1,5954,6143,-8,11312945,11319095 -6 + chr8 11319091 11319118 chr8,11319091,11319118,+,A-rich,Low_complexity,Low_complexity,1,27,0,11319091,11319118 -6 + chr8 11320446 11320755 chr8,11320446,11320755,+,AluSz,SINE,Alu,1,307,-5,11320446,11320760 -6 + chr8 11320938 11321159 chr8,11320938,11321159,-,Tigger15a,DNA,TcMar-Tigger,-229,486,247,11320709,11321405 +6 - chr8 11345748 11345858 chr8,11345658,11345858,-,MER66B,LTR,ERV1,0,486,273,11345658,11346130 +5 - chr8 11345858 11345914 chr8,11345858,11345914,+,(TA)n,Simple_repeat,Simple_repeat,1,56,0,11345858,11345914 -6 + chr8 11345914 11346210 chr8,11345914,11346210,-,MER66B,LTR,ERV1,-214,272,12,11345700,11346221 +6 - chr8 11383813 11384001 chr8,11383506,11384857,-,L1ME3,LINE,L1,-818,5328,3956,11382688,11388812 -3 - chr8 11394124 11394335 chr8,11393892,11396004,-,MER31-int,LTR,ERV1,-436,6482,2596,11393456,11398599 -1 - chr8 11401066 11401165 chr8,11400640,11401696,-,L1M5,LINE,L1,-1526,4620,3413,11399114,11405108 -3 - chr8 11404541 11404702 chr8,11402887,11408108,-,L1PA4,LINE,L1,-817,5329,124,11402070,11408231 -3 - chr8 11438040 11438141 chr8,11437971,11438141,+,L2b,LINE,L2,3211,3370,-5,11434761,11438146 +2 + chr8 11438554 11438658 chr8,11438554,11438688,-,L1ME4a,LINE,L1,-10,6114,5960,11438544,11444647 -5 - chr8 11552502 11552700 chr8,11552502,11552700,-,L1MC5,LINE,L1,-5,9299,9094,11552497,11561793 +6 - chr8 11552876 11552893 chr8,11552876,11552893,+,(CA)n,Simple_repeat,Simple_repeat,1,18,0,11552876,11552893 -6 + chr8 11552893 11552941 chr8,11552893,11552941,+,(ACACATGC)n,Simple_repeat,Simple_repeat,1,48,0,11552893,11552941 -6 + chr8 11552941 11552991 chr8,11552941,11553123,+,(ACACAT)n,Simple_repeat,Simple_repeat,1,185,0,11552941,11553123 -1 + chr8 11553370 11553512 chr8,11553370,11553512,-,Arthur1A,DNA,hAT-Tip100,0,177,29,11553370,11553540 +6 - chr8 11554130 11554207 chr8,11554087,11554257,+,Charlie22a,DNA,hAT-Charlie,97,258,-233,11553991,11554490 -1 + chr8 11559784 11559847 chr8,11559745,11559847,+,L2c,LINE,L2,3051,3158,-229,11556695,11560076 -4 + chr8 11576452 11576521 chr8,11576452,11576521,+,L3,LINE,CR1,4022,4096,-3,11572431,11576524 +6 + chr8 11577009 11577188 chr8,11577009,11577188,+,MIR,SINE,MIR,50,251,-11,11576960,11577199 +6 + chr8 11581241 11581297 chr8,11581241,11581297,+,L1MB3,LINE,L1,5685,5739,-444,11575557,11581741 +6 + chr8 11581297 11581342 chr8,11581297,11581661,-,THE1B,LTR,ERVL-MaLR,0,364,1,11581297,11581661 -5 - chr8 11761315 11761606 chr8,11761315,11761606,+,AluSp,SINE,Alu,1,296,-17,11761315,11761623 +1 + chr8 11762546 11762587 chr8,11762546,11762587,+,(AC)n,Simple_repeat,Simple_repeat,1,41,0,11762546,11762587 +6 + chr8 11762849 11763157 chr8,11762849,11763157,+,AluSq2,SINE,Alu,1,308,-5,11762849,11763162 +6 + chr8 11798074 11798147 chr8,11798074,11798359,-,AluSx1,SINE,Alu,-10,302,1,11798064,11798359 +2 - chr8 11801698 11801986 chr8,11801695,11801986,-,AluSc,SINE,Alu,-14,295,3,11801681,11801988 +5 - chr8 12177382 12177474 chr8,12177188,12177474,-,L1MB3,LINE,L1,-7,6176,5879,12177181,12183352 -2 - chr8 12177527 12177550 chr8,12177527,12177633,-,MIRb,SINE,MIR,-39,229,110,12177488,12177742 -5 - chr8 12195255 12195422 chr8,12195255,12195422,-,L2c,LINE,L2,-3,3384,3220,12195252,12198641 -6 - chr8 12370761 12370816 chr8,12369672,12370816,-,HSMAR2,DNA,TcMar-Mariner,-1,1301,145,12369671,12370960 -2 - chr8 12413444 12414373 chr8,12413444,12414465,+,LTR5A,LTR,ERVK,1,1033,0,12413444,12414465 +5 + chr8 12476462 12476581 chr8,12476449,12476581,-,FLAM_A,SINE,Alu,-10,132,1,12476439,12476581 -1 - chr8 12476582 12476638 chr8,12476582,12476638,+,MER5B,DNA,hAT-Charlie,43,97,-81,12476540,12476719 +6 + chr8 12778306 12778356 chr8,12778306,12778529,+,L1ME4a,LINE,L1,5670,5913,-211,12772637,12778740 -2 + chr8 12794243 12794286 chr8,12794216,12794286,+,MER51D,LTR,ERV1,500,571,-86,12793717,12794372 +1 + chr8 13338574 13338633 chr8,13338538,13338633,-,L2c,LINE,L2,-12,3375,3289,13338526,13341921 -1 - chr8 13339652 13339750 chr8,13339652,13339750,+,Charlie4z,DNA,hAT-Charlie,52,146,-21,13339601,13339771 +6 + chr8 13339835 13339858 chr8,13339835,13339858,+,(TTCT)n,Simple_repeat,Simple_repeat,1,24,0,13339835,13339858 +6 + chr8 13339858 13340177 chr8,13339858,13340177,-,L2a,LINE,L2,0,3426,3062,13339858,13343238 -6 - chr8 13340197 13340500 chr8,13340197,13340500,-,AluSx1,SINE,Alu,-9,303,1,13340188,13340500 -6 - chr8 13341373 13341537 chr8,13341373,13341537,-,MER5A,DNA,hAT-Charlie,-1,188,25,13341372,13341561 -6 - chr8 13341623 13341750 chr8,13341623,13341750,+,MamRTE1,LINE,RTE-BovB,3463,3592,-220,13338161,13341970 +6 + chr8 13342367 13342754 chr8,13342367,13342797,+,MLT2C2,LTR,ERVL,1,444,-20,13342367,13342817 +5 + chr8 13557657 13557804 chr8,13557445,13557804,+,THE1D,LTR,ERVL-MaLR,1,377,-4,13557445,13557808 -5 + chr8 13557828 13558272 chr8,13557828,13558272,-,MER65C,LTR,ERV1,0,461,1,13557828,13558272 +6 - chr8 13844101 13844243 chr8,13844097,13844243,-,L2c,LINE,L2,-3,3384,3228,13844094,13847470 +5 - chr8 14165013 14165077 chr8,14164988,14165077,+,L2a,LINE,L2,3336,3424,-2,14161653,14165079 +2 + chr8 14879057 14879300 chr8,14879042,14879346,+,AluJr,SINE,Alu,1,301,-11,14879042,14879357 -5 + chr8 15973315 15973430 chr8,15973116,15973441,-,MER73,LTR,ERVL,0,901,511,15973116,15973951 -1 - chr8 15993542 15993641 chr8,15993379,15993713,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,15993379,15993713 +3 + chr8 16000152 16000277 chr8,16000063,16000277,-,MIR,SINE,MIR,-42,220,23,16000021,16000299 -2 - chr8 16661940 16662052 chr8,16661680,16662112,-,L3,LINE,CR1,-97,4002,3560,16661583,16665671 -3 - chr8 16664823 16664879 chr8,16664622,16664932,-,AluJb,SINE,Alu,0,312,5,16664622,16664936 -5 - chr8 16690889 16690962 chr8,16690889,16691372,+,MER41B,LTR,ERV1,105,595,-39,16690785,16691411 -1 + chr8 16914956 16915044 chr8,16914956,16915079,-,7SK,RNA,RNA,-126,205,79,16914830,16915157 +1 - chr8 17131181 17131926 chr8,17131072,17131926,-,LTR41,LTR,ERVL,0,768,1,17131072,17131926 -1 - chr8 17132363 17132791 chr8,17132363,17132791,-,ERVL-E-int,LTR,ERVL,-515,5152,4722,17131848,17137512 -6 - chr8 17132791 17133069 chr8,17132791,17133147,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,17132791,17133147 +4 + chr8 17134144 17134261 chr8,17134125,17134431,-,MLT2B4,LTR,ERVL,0,556,212,17134125,17134642 -3 - chr8 17500239 17500331 chr8,17500239,17500331,-,MamSINE1,SINE,tRNA-RTE,-2,288,197,17500237,17500527 -6 - chr8 17500435 17500525 chr8,17500435,17500525,+,AluSx1,SINE,Alu,46,127,-185,17500390,17500710 +6 + chr8 17500525 17500605 chr8,17500525,17500631,+,L1PA8,LINE,L1,6066,6171,-1,17494460,17500632 +5 + chr8 17510613 17510672 chr8,17510397,17510672,-,L1PA8,LINE,L1,-542,5589,5315,17509855,17515986 -1 - chr8 17510672 17511275 chr8,17510672,17511275,+,L1PA8,LINE,L1,5569,6170,-2,17505104,17511277 +6 + chr8 17703988 17704128 chr8,17703644,17704128,+,MER11A,LTR,ERVK,776,1252,-14,17702869,17704142 +1 + chr8 17704132 17704182 chr8,17704132,17704189,-,L1MB1,LINE,L1,-468,5700,5643,17703664,17709831 -4 - chr8 17801485 17801543 chr8,17801485,17801543,+,(CGCTCC)n,Simple_repeat,Simple_repeat,1,59,0,17801485,17801543 +6 + chr8 17809211 17809399 chr8,17809036,17809399,-,THE1D,LTR,ERVL-MaLR,0,381,1,17809036,17809399 -1 - chr8 17809612 17809687 chr8,17809612,17809890,+,MER1B,DNA,hAT-Charlie,1,274,-65,17809612,17809955 +4 + chr8 17820500 17820609 chr8,17820500,17820609,+,L1MC1,LINE,L1,6208,6318,-15,17814293,17820624 +6 + chr8 17860958 17861069 chr8,17860953,17861073,-,L2b,LINE,L2,-2,3373,3250,17860951,17864322 -5 - chr8 17882419 17882485 chr8,17882419,17882485,-,MIRb,SINE,MIR,-43,225,162,17882376,17882646 -6 - chr8 17882500 17882570 chr8,17882500,17882570,-,MIR,SINE,MIR,-182,80,2,17882318,17882571 -6 - chr8 17907210 17907394 chr8,17907210,17907444,-,LTR14A,LTR,ERVK,-46,298,181,17907164,17907624 -4 - chr8 18085203 18085237 chr8,18085203,18085237,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,18085203,18085237 +6 + chr8 18085360 18085485 chr8,18085360,18085829,-,L2a,LINE,L2,-1,3425,2949,18085359,18088777 -4 - chr8 18088000 18088110 chr8,18087979,18088110,-,FLAM_C,SINE,Alu,-10,133,1,18087969,18088110 -5 - chr8 18095826 18095987 chr8,18095459,18095987,+,L2a,LINE,L2,2333,2884,-535,18093127,18096522 +5 + chr8 18095987 18096288 chr8,18095987,18096288,-,AluSx,SINE,Alu,-12,300,1,18095975,18096288 -6 - chr8 18096288 18096394 chr8,18096288,18096804,+,L2a,LINE,L2,2885,3424,-2,18093404,18096806 +5 + chr8 18734147 18734358 chr8,18734147,18734358,+,MIRc,SINE,MIR,17,242,-26,18734131,18734384 +6 + chr8 18865101 18865201 chr8,18865101,18865201,+,MIR,SINE,MIR,7,109,-153,18865095,18865354 -6 + chr8 18865224 18865247 chr8,18865224,18865287,+,(TA)n,Simple_repeat,Simple_repeat,1,63,0,18865224,18865287 -1 + chr8 19091754 19091888 chr8,19091754,19091908,-,MIRb,SINE,MIR,-68,200,47,19091686,19091954 -4 - chr8 19114885 19114998 chr8,19114862,19114998,-,FLAM_C,SINE,Alu,-8,135,1,19114854,19114998 -2 - chr8 19183674 19183806 chr8,19183662,19183806,-,MIR3,SINE,MIR,-38,170,27,19183624,19183832 +5 - chr8 19235464 19235605 chr8,19234893,19235605,+,L2b,LINE,L2,2331,3386,-1,19232563,19235606 -4 + chr8 19246392 19246450 chr8,19246392,19246572,-,L4_B_Mam,LINE,RTE-X,-1,4940,4773,19246391,19251344 -4 - chr8 19246709 19246825 chr8,19246572,19246833,+,AluSg7,SINE,Alu,1,260,-49,19246572,19246882 -3 + chr8 19254241 19254278 chr8,19253895,19254278,+,MLT1F2,LTR,ERVL-MaLR,35,561,-8,19253861,19254286 -5 + chr8 19255753 19255849 chr8,19255712,19256390,+,L1MC1,LINE,L1,2670,3314,-3007,19253043,19259397 -3 + chr8 19256178 19256227 chr8,19255712,19256390,+,L1MC1,LINE,L1,2670,3314,-3007,19253043,19259397 -3 + chr8 19257197 19257334 chr8,19257042,19257386,+,L1MC1,LINE,L1,6172,6508,0,19250871,19257386 -1 + chr8 19259306 19259407 chr8,19259200,19259407,+,L1MEd,LINE,L1,314,515,-6571,19258887,19265978 -4 + chr8 19277542 19277573 chr8,19277542,19277999,+,L2a,LINE,L2,2883,3341,-85,19274660,19278084 +5 + chr8 19678572 19678659 chr8,19678447,19678659,+,L3,LINE,CR1,153,368,-3731,19678295,19682390 +1 + chr8 19688724 19688903 chr8,19688680,19688903,+,L2,LINE,L2,1834,2056,-1363,19686847,19690266 +2 + chr8 20079305 20079522 chr8,20078969,20079675,+,MER44C,DNA,TcMar-Tigger,1,727,-6,20078969,20079681 +1 + chr8 20290173 20290263 chr8,20290173,20290263,+,5S,rRNA,rRNA,1,90,-31,20290173,20290294 +6 + chr8 20358258 20358350 chr8,20358169,20358350,+,MIRc,SINE,MIR,11,216,-52,20358159,20358402 +2 + chr8 20359726 20359780 chr8,20359626,20359829,-,MIR,SINE,MIR,-3,259,19,20359623,20359847 -3 - chr8 20363604 20363830 chr8,20363533,20363976,+,MLT1C,LTR,ERVL-MaLR,7,467,0,20363527,20363976 +3 + chr8 20372526 20372769 chr8,20372237,20372802,-,MLT1H,LTR,ERVL-MaLR,-10,545,27,20372227,20372828 -5 - chr8 20655691 20655910 chr8,20654283,20655910,+,Charlie2a,DNA,hAT-Charlie,87,1877,-984,20654197,20656894 -5 + chr8 20655950 20656259 chr8,20655950,20656348,+,MSTA,LTR,ERVL-MaLR,1,425,-3,20655950,20656351 -2 + chr8 20667979 20668036 chr8,20667979,20668041,+,L2b,LINE,L2,3304,3365,-10,20664676,20668051 -2 + chr8 20700060 20700134 chr8,20700060,20700201,+,G-rich,Low_complexity,Low_complexity,1,136,0,20700060,20700201 -1 + chr8 20948699 20948793 chr8,20948682,20948813,-,AluJo,SINE,Alu,-181,131,1,20948501,20948813 -3 - chr8 20950087 20950175 chr8,20950031,20950418,+,MLT1I,LTR,ERVL-MaLR,1,407,-4,20950031,20950422 +5 + chr8 20952690 20952916 chr8,20952690,20952933,-,MLT1J2,LTR,ERVL-MaLR,0,448,207,20952690,20953139 +2 - chr8 20953127 20953496 chr8,20953032,20953606,+,MLT1E3,LTR,ERVL-MaLR,1,624,0,20953032,20953606 +1 + chr8 20953928 20954071 chr8,20953928,20954071,-,Charlie4z,DNA,hAT-Charlie,-22,145,17,20953906,20954087 -1 - chr8 20955685 20955699 chr8,20955276,20955699,+,LTR33,LTR,ERVL,56,515,0,20955221,20955699 +2 + chr8 20955812 20955834 chr8,20955812,20955957,+,Charlie29a,DNA,hAT-Charlie,550,719,0,20955263,20955957 +4 + chr8 20955874 20955957 chr8,20955812,20955957,+,Charlie29a,DNA,hAT-Charlie,550,719,0,20955263,20955957 +2 + chr8 20956061 20956120 chr8,20956061,20962335,+,L1PA7,LINE,L1,233,6465,-4,20955829,20962339 +4 + chr8 20962781 20962901 chr8,20962772,20962901,-,FLAM_A,SINE,Alu,-20,122,2,20962752,20962902 -5 - chr8 20973910 20974063 chr8,20973910,20974063,+,MER96,DNA,hAT-Tip100,1,167,-8,20973910,20974071 +1 + chr8 20974350 20974379 chr8,20974350,20974379,+,(TCAT)n,Simple_repeat,Simple_repeat,1,29,0,20974350,20974379 +6 + chr8 20974599 20974641 chr8,20974599,20974641,-,L2c,LINE,L2,-228,3159,3117,20974371,20977757 -6 - chr8 20983457 20983700 chr8,20983420,20983700,+,MLT1J,LTR,ERVL-MaLR,225,610,0,20983196,20983700 +2 + chr8 20983756 20984106 chr8,20983756,20984172,+,MLT1B,LTR,ERVL-MaLR,1,390,0,20983756,20984172 +4 + chr8 20986411 20986486 chr8,20986338,20987521,+,L1MD1,LINE,L1,37,1439,-5194,20986302,20992715 +3 + chr8 20995029 20995063 chr8,20995000,20995063,-,MIRb,SINE,MIR,-103,165,104,20994897,20995166 -2 - chr8 21023527 21023576 chr8,21023527,21023663,+,L2c,LINE,L2,3210,3378,-9,21020318,21023672 +4 + chr8 21027209 21027297 chr8,21026676,21027562,-,L2c,LINE,L2,-17,3409,2432,21026659,21029993 -3 - chr8 21130014 21130057 chr8,21130014,21130057,+,(TA)n,Simple_repeat,Simple_repeat,1,45,0,21130014,21130057 -6 + chr8 21298206 21298407 chr8,21298161,21298736,+,L1MEh,LINE,L1,220,796,-1439,21297942,21300175 +1 + chr8 21307770 21307956 chr8,21307528,21307956,+,MLT1J1,LTR,ERVL-MaLR,3,444,0,21307526,21307956 +2 + chr8 21308372 21308556 chr8,21308372,21308556,-,MIRb,SINE,MIR,-52,216,17,21308320,21308572 -6 - chr8 21309296 21309449 chr8,21309296,21309469,+,MIRc,SINE,MIR,2,182,-80,21309295,21309549 +5 + chr8 22170155 22170192 chr8,22170155,22170192,+,(GCCCT)n,Simple_repeat,Simple_repeat,1,37,0,22170155,22170192 +6 + chr8 22170347 22170563 chr8,22170347,22170563,-,MIRb,SINE,MIR,0,268,20,22170347,22170582 -6 - chr8 22170675 22170944 chr8,22170675,22170944,+,AluSx,SINE,Alu,4,301,-11,22170672,22170955 +6 + chr8 22171195 22171335 chr8,22171195,22171335,+,MIR3,SINE,MIR,70,204,-4,22171126,22171339 +6 + chr8 22171358 22171440 chr8,22171358,22171440,+,MIRc,SINE,MIR,173,249,-19,22171186,22171459 +6 + chr8 22171641 22171710 chr8,22171641,22171818,+,MIR3,SINE,MIR,13,203,-5,22171629,22171823 +5 + chr8 22543620 22543660 chr8,22543620,22543660,+,(GT)n,Simple_repeat,Simple_repeat,1,40,0,22543620,22543660 -6 + chr8 22544416 22544700 chr8,22544416,22544730,+,AluSc5,SINE,Alu,2,306,-3,22544415,22544733 -2 + chr8 22616535 22616657 chr8,22616535,22616835,+,AluSg,SINE,Alu,1,298,-12,22616535,22616847 -1 + chr8 22679358 22679522 chr8,22679358,22679522,-,MIR3,SINE,MIR,-21,187,26,22679337,22679547 +6 - chr8 22679832 22680019 chr8,22679832,22680019,-,MIR,SINE,MIR,-56,206,15,22679776,22680033 +6 - chr8 22680517 22680603 chr8,22680517,22680603,+,MIRb,SINE,MIR,184,268,0,22680334,22680603 -6 + chr8 22680655 22680898 chr8,22680655,22680898,+,L2c,LINE,L2,3150,3425,-1,22677506,22680899 -6 + chr8 22681704 22682172 chr8,22681704,22682172,+,L2a,LINE,L2,2913,3425,-1,22678792,22682173 -6 + chr8 22682203 22682346 chr8,22682203,22682346,+,MIR3,SINE,MIR,32,183,-25,22682172,22682371 -6 + chr8 22682600 22682782 chr8,22682600,22682782,+,CR1-16_AMi,LINE,CR1,518,682,-169,22682083,22682951 -6 + chr8 22683016 22683186 chr8,22683016,22683186,-,MIR,SINE,MIR,-4,258,47,22683012,22683232 +6 - chr8 22745645 22745692 chr8,22745645,22745692,+,(CTCTGC)n,Simple_repeat,Simple_repeat,1,48,0,22745645,22745692 +6 + chr8 22754828 22754862 chr8,22754828,22754957,+,MIR3,SINE,MIR,51,201,-7,22754778,22754964 +4 + chr8 22755950 22756008 chr8,22755950,22756030,+,L2c,LINE,L2,3310,3377,-10,22752641,22756040 +4 + chr8 22757114 22757320 chr8,22757114,22757320,-,MIRb,SINE,MIR,-19,243,3,22757095,22757322 -6 - chr8 22757459 22757647 chr8,22757459,22757647,-,MIRc,SINE,MIR,-53,215,29,22757406,22757675 -6 - chr8 22757948 22758068 chr8,22757948,22758068,+,MIRc,SINE,MIR,12,150,-118,22757937,22758186 +6 + chr8 22798536 22798616 chr8,22798173,22798677,+,MER74B,LTR,ERVL,56,564,-58,22798118,22798735 +5 + chr8 22879291 22879405 chr8,22879232,22879405,+,L2c,LINE,L2,3224,3387,0,22876009,22879405 +2 + chr8 22880576 22880588 chr8,22880576,22880628,-,L2b,LINE,L2,-20,3355,3306,22880556,22883933 -4 - chr8 22884783 22884945 chr8,22884783,22884945,+,L2b,LINE,L2,2995,3155,-220,22881789,22885165 +6 + chr8 22885183 22885419 chr8,22885183,22885419,-,MIRb,SINE,MIR,-3,265,13,22885180,22885431 -6 - chr8 22886033 22886067 chr8,22886033,22886067,+,(TCAC)n,Simple_repeat,Simple_repeat,1,35,0,22886033,22886067 +6 + chr8 22886122 22886218 chr8,22886122,22886218,-,L2c,LINE,L2,-34,3353,3256,22886088,22889473 -6 - chr8 22886362 22886518 chr8,22886362,22886518,+,MIR,SINE,MIR,58,218,-44,22886305,22886562 +6 + chr8 22886564 22886713 chr8,22886564,22886713,+,L2,LINE,L2,8,148,-3271,22886557,22889984 +6 + chr8 22887089 22887135 chr8,22887089,22887135,+,(GT)n,Simple_repeat,Simple_repeat,1,46,0,22887089,22887135 +6 + chr8 22887151 22887243 chr8,22887151,22887448,-,AluSq2,SINE,Alu,-16,297,1,22887135,22887448 -4 - chr8 22887676 22887762 chr8,22887483,22887762,+,AluJb,SINE,Alu,1,288,-24,22887483,22887786 +2 + chr8 22895434 22895447 chr8,22895163,22895447,+,ERVL-E-int,LTR,ERVL,1010,1307,-4360,22894154,22899807 -5 + chr8 22895447 22895837 chr8,22895447,22895837,-,L1MEf,LINE,L1,-4840,1360,941,22890607,22896777 +6 - chr8 22897717 22897788 chr8,22897615,22897788,+,L2,LINE,L2,2331,2509,-910,22895285,22898698 -4 + chr8 22897788 22897813 chr8,22897788,22898110,+,MLT1A,LTR,ERVL-MaLR,1,333,-41,22897788,22898151 -1 + chr8 22984635 22984918 chr8,22984635,22984943,+,AluSx,SINE,Alu,1,304,-8,22984635,22984951 -2 + chr8 23006381 23006616 chr8,23006288,23006616,-,L2c,LINE,L2,0,3387,3074,23006288,23009689 +5 - chr8 23007217 23007246 chr8,23007217,23007246,+,(CAC)n,Simple_repeat,Simple_repeat,1,29,0,23007217,23007246 -6 + chr8 23068333 23068420 chr8,23068333,23068434,+,A-rich,Low_complexity,Low_complexity,1,95,0,23068333,23068434 +4 + chr8 23071783 23071807 chr8,23071783,23071824,+,MIR3,SINE,MIR,112,150,-58,23071672,23071882 -2 + chr8 23072410 23072425 chr8,23072410,23072484,-,MIRc,SINE,MIR,-73,195,117,23072337,23072600 +2 - chr8 23074445 23074488 chr8,23074445,23074584,-,MIR3,SINE,MIR,-20,188,56,23074425,23074639 +1 - chr8 23081836 23081921 chr8,23081836,23081921,+,Tigger5b,DNA,TcMar-Tigger,386,472,0,23081451,23081921 +6 + chr8 23081921 23082005 chr8,23081921,23082005,+,MER47C,DNA,TcMar-Tigger,13,97,0,23081909,23082005 +6 + chr8 23083390 23083459 chr8,23083390,23083459,+,L2a,LINE,L2,3335,3402,-24,23080056,23083483 +6 + chr8 23189279 23189316 chr8,23189157,23189316,+,MSTC,LTR,ERVL-MaLR,282,427,-1,23188876,23189317 +1 + chr8 23189400 23189451 chr8,23189400,23189693,+,AluY,SINE,Alu,1,295,-16,23189400,23189709 +4 + chr8 23190212 23190226 chr8,23189933,23190226,-,AluY,SINE,Alu,-18,293,1,23189915,23190226 -2 - chr8 23190226 23190507 chr8,23190226,23190507,-,MER101-int,LTR,ERV1,-3471,1465,1174,23186755,23191680 -6 - chr8 23190599 23190627 chr8,23190599,23190627,+,A-rich,Low_complexity,Low_complexity,1,29,0,23190599,23190627 +6 + chr8 23224820 23224879 chr8,23224820,23224879,+,G-rich,Low_complexity,Low_complexity,1,62,0,23224820,23224879 +6 + chr8 23225478 23225783 chr8,23225478,23225783,-,AluSg4,SINE,Alu,-8,302,2,23225470,23225784 -1 - chr8 23228066 23228207 chr8,23227909,23228227,+,MSTD,LTR,ERVL-MaLR,70,396,0,23227840,23228227 +5 + chr8 23229948 23230220 chr8,23229921,23230220,-,AluSx1,SINE,Alu,-9,303,1,23229912,23230220 -2 - chr8 23230003 23230220 chr8,23229921,23230220,-,AluSx1,SINE,Alu,-9,303,1,23229912,23230220 +4 - chr8 23230220 23230367 chr8,23230220,23230367,-,L1MEf,LINE,L1,-3859,2287,2143,23226361,23232509 -6 - chr8 23230220 23230367 chr8,23230220,23230367,-,L1MEf,LINE,L1,-3859,2287,2143,23226361,23232509 +6 - chr8 23230405 23230926 chr8,23230405,23231008,-,L1MEf,LINE,L1,-4676,1566,847,23225729,23231854 -1 - chr8 23230405 23230915 chr8,23230405,23231008,-,L1MEf,LINE,L1,-4676,1566,847,23225729,23231854 +1 - chr8 23336468 23336513 chr8,23336468,23336513,+,(GGAGT)n,Simple_repeat,Simple_repeat,1,49,0,23336468,23336513 +6 + chr8 23336641 23336716 chr8,23336641,23336716,-,ERVL-B4-int,LTR,ERVL,-3552,2162,2087,23333089,23338802 -6 - chr8 23336749 23337457 chr8,23336749,23337699,-,ERVL-B4-int,LTR,ERVL,-3718,1996,1034,23333031,23338732 -4 - chr8 23363877 23364167 chr8,23363877,23364167,-,AluSx,SINE,Alu,-15,297,9,23363862,23364175 -6 - chr8 23364557 23364862 chr8,23364557,23364862,+,AluSz6,SINE,Alu,5,303,-9,23364553,23364871 +6 + chr8 23365525 23366088 chr8,23365525,23366088,+,L2,LINE,L2,731,1327,-2092,23364795,23368180 +6 + chr8 23458628 23458786 chr8,23458628,23458786,-,MIR3,SINE,MIR,-1,207,34,23458627,23458819 -6 - chr8 23458879 23459033 chr8,23458879,23459033,+,MamTip2,DNA,hAT-Tip100,1,193,-112,23458879,23459145 +6 + chr8 23459040 23459091 chr8,23459040,23459345,+,AluSx,SINE,Alu,1,301,-11,23459040,23459356 +4 + chr8 23484833 23484921 chr8,23484608,23484921,-,AluSp,SINE,Alu,0,313,1,23484608,23484921 -2 - chr8 23484923 23484971 chr8,23484923,23485215,-,AluSc,SINE,Alu,-15,294,1,23484908,23485215 -5 - chr8 23726374 23726439 chr8,23726374,23726439,-,MIR,SINE,MIR,-20,242,177,23726354,23726615 +6 - chr8 23732549 23732660 chr8,23732347,23732936,-,MLT1G1,LTR,ERVL-MaLR,0,579,1,23732347,23732936 +3 - chr8 24169957 24170115 chr8,24169736,24170147,+,L2a,LINE,L2,2044,2457,-962,24167693,24171109 -5 + chr8 24387161 24387515 chr8,24386908,24387825,-,HERVK22-int,LTR,ERVK,-5899,938,1,24381009,24387825 +1 - chr8 24387751 24387825 chr8,24386908,24387825,-,HERVK22-int,LTR,ERVK,-5899,938,1,24381009,24387825 +1 - chr8 24387825 24387991 chr8,24387825,24388275,-,LTR22A,LTR,ERVK,0,458,5,24387825,24388279 +2 - chr8 24884013 24884123 chr8,24884013,24884317,+,AluJr,SINE,Alu,6,300,-12,24884008,24884329 -2 + chr8 24913087 24913179 chr8,24913087,24913179,+,G-rich,Low_complexity,Low_complexity,1,97,0,24913087,24913179 -6 + chr8 24913302 24913384 chr8,24913302,24913384,+,A-rich,Low_complexity,Low_complexity,1,83,0,24913302,24913384 -6 + chr8 24992053 24992191 chr8,24992053,24992191,-,L1M6,LINE,L1,-6339,157,2,24985714,24992192 -6 - chr8 25426293 25426580 chr8,25426194,25426648,-,MLT2A1,LTR,ERVL,0,444,1,25426194,25426648 +1 - chr8 25687078 25687113 chr8,25687078,25687113,+,(GCCTCTT)n,Simple_repeat,Simple_repeat,1,36,0,25687078,25687113 +6 + chr8 25776815 25776890 chr8,25776815,25776922,+,MIRc,SINE,MIR,128,245,-23,25776688,25776945 +4 + chr8 25777204 25777456 chr8,25777174,25777502,+,MLT1A0,LTR,ERVL-MaLR,4,365,0,25777171,25777502 +5 + chr8 25834129 25834249 chr8,25833961,25834249,-,Charlie29a,DNA,hAT-Charlie,0,719,448,25833961,25834696 +5 - chr8 25839965 25840132 chr8,25839842,25840132,+,L2c,LINE,L2,2732,3027,-392,25837111,25840524 -4 + chr8 26422800 26422849 chr8,26422800,26422899,-,AluSx,SINE,Alu,-193,119,21,26422607,26422919 -4 - chr8 26423679 26423929 chr8,26423627,26423929,+,AluJr,SINE,Alu,1,300,-12,26423627,26423941 +5 + chr8 26440609 26440704 chr8,26440609,26440893,-,LTR16A1,LTR,ERVL,0,456,163,26440609,26441055 -4 - chr8 26442080 26442195 chr8,26442051,26442352,-,AluSz,SINE,Alu,-8,304,1,26442043,26442352 -3 - chr8 27086093 27086279 chr8,27086093,27086279,+,MIRb,SINE,MIR,35,225,-43,27086059,27086322 +6 + chr8 27087427 27087651 chr8,27087427,27087651,+,MIRb,SINE,MIR,20,249,-19,27087408,27087670 +6 + chr8 27184321 27184387 chr8,27183592,27185499,-,L1MC5a,LINE,L1,-47,2730,785,27183545,27186283 -1 - chr8 27210389 27210494 chr8,27210389,27210580,+,MLT1L,LTR,ERVL-MaLR,313,509,-101,27210077,27210681 +5 + chr8 27701194 27701429 chr8,27700627,27701429,+,L1ME2,LINE,L1,5325,6156,-8,27695303,27701437 +1 + chr8 27701546 27701591 chr8,27701546,27701591,+,(TTTC)n,Simple_repeat,Simple_repeat,1,47,0,27701546,27701591 +6 + chr8 27701591 27701675 chr8,27701591,27701675,-,AluJo,SINE,Alu,0,312,229,27701591,27701903 -6 - chr8 27701816 27701936 chr8,27701816,27701936,-,MER81,DNA,hAT-Blackjack,0,114,1,27701816,27701936 -6 - chr8 27703602 27703690 chr8,27703602,27703690,-,MIR3,SINE,MIR,-81,127,39,27703521,27703728 -6 - chr8 27754516 27754639 chr8,27754488,27754767,-,AluJo,SINE,Alu,-10,302,31,27754478,27754797 -3 - chr8 27904481 27904498 chr8,27904345,27904498,-,MIR,SINE,MIR,0,262,110,27904345,27904607 -1 - chr8 27910184 27910310 chr8,27910000,27910351,+,MLT1A,LTR,ERVL-MaLR,9,372,-2,27909992,27910353 +5 + chr8 28250236 28250443 chr8,28250236,28250443,+,LTR40a,LTR,ERVL,1,228,-291,28250236,28250734 -6 + chr8 28415524 28415545 chr8,28415133,28415545,+,Charlie22a,DNA,hAT-Charlie,9,425,-66,28415125,28415611 -5 + chr8 28447393 28447564 chr8,28447393,28447671,+,L1MC5,LINE,L1,7086,7344,-1960,28440308,28449631 +4 + chr8 28448954 28448965 chr8,28448751,28448965,+,MER58A,DNA,hAT-Charlie,1,216,-8,28448751,28448973 +1 + chr8 28448965 28449106 chr8,28448965,28449312,+,L1MC5,LINE,L1,8543,8912,-392,28440423,28449704 +4 + chr8 28696216 28696565 chr8,28696216,28696565,-,L1ME3,LINE,L1,-2,6160,5781,28696214,28702345 +6 - chr8 28696565 28696852 chr8,28696565,28696852,-,AluSz,SINE,Alu,-18,294,8,28696547,28696859 +6 - chr8 28696852 28696955 chr8,28696852,28696955,-,L1ME3,LINE,L1,-382,5780,5683,28696470,28702637 +6 - chr8 28697118 28697215 chr8,28697118,28697215,+,L2c,LINE,L2,3298,3387,0,28693821,28697215 -6 + chr8 28697227 28697408 chr8,28697227,28697408,+,MLT1O,LTR,ERVL-MaLR,20,206,-336,28697208,28697744 -6 + chr8 28697552 28697851 chr8,28697552,28697851,+,AluSx,SINE,Alu,1,308,-4,28697552,28697855 -6 + chr8 28698169 28698358 chr8,28698169,28698358,-,L2,LINE,L2,-816,2603,2414,28697353,28700771 +5 - chr8 28698404 28698474 chr8,28698404,28698528,+,MIRb,SINE,MIR,87,232,-36,28698318,28698564 -2 + chr8 28699527 28699806 chr8,28699527,28699806,-,AluSg,SINE,Alu,-31,279,1,28699496,28699806 +6 - chr8 28700230 28700295 chr8,28700230,28700295,+,A-rich,Low_complexity,Low_complexity,1,68,0,28700230,28700295 -6 + chr8 28701421 28701455 chr8,28701421,28701455,+,(CGCGCC)n,Simple_repeat,Simple_repeat,1,34,0,28701421,28701455 -6 + chr8 28798431 28798499 chr8,28798431,28798499,+,Charlie4z,DNA,hAT-Charlie,27,92,-75,28798405,28798574 +6 + chr8 28798499 28798641 chr8,28798499,28798798,-,AluSz,SINE,Alu,-6,306,1,28798493,28798798 -4 - chr8 28949676 28949828 chr8,28949639,28949828,-,L2c,LINE,L2,0,3387,3189,28949639,28953016 -1 - chr8 28955851 28955955 chr8,28955669,28955973,+,AluSx1,SINE,Alu,1,303,-9,28955669,28955982 +5 + chr8 29055935 29055948 chr8,29055924,29055948,+,(T)n,Simple_repeat,Simple_repeat,1,24,0,29055924,29055948 +1 + chr8 29138525 29138642 chr8,29138358,29139184,+,L1MC5,LINE,L1,8378,9292,-12,29129981,29139196 +3 + chr8 29352420 29352580 chr8,29352361,29352580,+,MER96B,DNA,hAT-Tip100,188,417,0,29352174,29352580 -5 + chr8 29527312 29527336 chr8,29527205,29527336,-,MIR1_Amn,SINE,MIR,-73,157,5,29527132,29527340 -1 - chr8 29548399 29548413 chr8,29548399,29548526,+,MIRb,SINE,MIR,88,225,-43,29548312,29548569 +4 + chr8 29587001 29587094 chr8,29586941,29587094,+,(TA)n,Simple_repeat,Simple_repeat,1,155,0,29586941,29587094 +1 + chr8 29587903 29588021 chr8,29587903,29588021,+,MER5A,DNA,hAT-Charlie,36,154,-35,29587868,29588056 +6 + chr8 29588103 29588261 chr8,29588103,29588261,+,MIR,SINE,MIR,1,169,-99,29588103,29588360 +6 + chr8 29588261 29588426 chr8,29588261,29588562,+,AluJo,SINE,Alu,1,307,-5,29588261,29588567 +5 + chr8 29677910 29678004 chr8,29677752,29678065,-,L2b,LINE,L2,-7,3368,3034,29677745,29681098 +3 - chr8 29721753 29721905 chr8,29721753,29721905,-,MIR3,SINE,MIR,-46,162,2,29721707,29721906 +6 - chr8 29722039 29722151 chr8,29722039,29722229,+,MIRb,SINE,MIR,28,211,-57,29722012,29722286 -2 + chr8 29726232 29726266 chr8,29726232,29726266,+,(CCTTCA)n,Simple_repeat,Simple_repeat,1,36,0,29726232,29726266 -6 + chr8 29735171 29735223 chr8,29735013,29735262,-,MIR,SINE,MIR,-2,260,2,29735011,29735263 +1 - chr8 29748309 29748353 chr8,29747934,29748353,-,MSTA,LTR,ERVL-MaLR,-1,427,1,29747933,29748353 -1 - chr8 29748015 29748109 chr8,29747934,29748353,-,MSTA,LTR,ERVL-MaLR,-1,427,1,29747933,29748353 +1 - chr8 29748353 29748579 chr8,29748353,29748657,+,MLT1B,LTR,ERVL-MaLR,95,390,0,29748259,29748657 +4 + chr8 29750163 29750773 chr8,29750163,29750773,+,L2a,LINE,L2,2766,3422,-4,29747398,29750777 +6 + chr8 29750880 29751196 chr8,29750880,29751196,+,Tigger3a,DNA,TcMar-Tigger,1,348,0,29750880,29751196 +6 + chr8 29751629 29751663 chr8,29751629,29751663,+,(TA)n,Simple_repeat,Simple_repeat,1,34,0,29751629,29751663 +6 + chr8 29751810 29752092 chr8,29751810,29752092,+,AluSp,SINE,Alu,1,283,-30,29751810,29752122 +6 + chr8 29752092 29752134 chr8,29752092,29752134,+,(AATA)n,Simple_repeat,Simple_repeat,1,42,0,29752092,29752134 +6 + chr8 29752134 29752149 chr8,29752134,29752149,+,AluSp,SINE,Alu,284,298,-15,29751851,29752164 +6 + chr8 29797510 29797571 chr8,29797510,29797571,+,MIRc,SINE,MIR,77,139,-129,29797434,29797700 +6 + chr8 29797671 29797767 chr8,29797671,29797767,-,L2c,LINE,L2,-37,3350,3249,29797634,29801015 -6 - chr8 29821430 29821522 chr8,29821144,29821522,-,MLT1B,LTR,ERVL-MaLR,-3,387,9,29821141,29821530 +4 - chr8 29854475 29854543 chr8,29854392,29854757,-,THE1C,LTR,ERVL-MaLR,0,375,1,29854392,29854757 +1 - chr8 29864644 29864698 chr8,29864404,29864991,+,L1MC3,LINE,L1,16,590,-5918,29864389,29870909 +1 + chr8 29871304 29871661 chr8,29871304,29871787,+,MamGypLTR1c,LTR,Gypsy,333,792,-11,29870972,29871798 +5 + chr8 29908534 29908626 chr8,29908504,29908626,-,AluSc,SINE,Alu,-8,301,180,29908496,29908805 -2 - chr8 29908626 29908803 chr8,29908626,29908803,+,GA-rich,Low_complexity,Low_complexity,1,179,0,29908626,29908803 +6 + chr8 29908806 29908817 chr8,29908806,29908817,-,MLT2D,LTR,ERVL,-51,505,496,29908755,29909312 -6 - chr8 29908817 29908885 chr8,29908817,29908885,+,(AGAA)n,Simple_repeat,Simple_repeat,1,68,0,29908817,29908885 +6 + chr8 29908885 29908950 chr8,29908885,29908950,-,MLT2D,LTR,ERVL,-55,505,432,29908830,29909381 -6 - chr8 29923037 29923321 chr8,29922955,29923321,-,MSTD,LTR,ERVL-MaLR,0,396,1,29922955,29923321 -3 - chr8 29952399 29952699 chr8,29952399,29952699,+,AluJr,SINE,Alu,1,302,-10,29952399,29952709 +5 + chr8 29952756 29952842 chr8,29952756,29952842,-,FLAM_C,SINE,Alu,-167,135,58,29952589,29952899 -6 - chr8 29952843 29952958 chr8,29952843,29952958,-,AluJb,SINE,Alu,-154,148,44,29952689,29953001 -6 - chr8 29953109 29953539 chr8,29953109,29953539,-,LTR16E2,LTR,ERVL,0,568,130,29953109,29953668 -6 - chr8 30155846 30155989 chr8,30155846,30155989,-,AluJr,SINE,Alu,-14,298,137,30155832,30156125 +6 - chr8 30155989 30156018 chr8,30155989,30156018,+,(T)n,Simple_repeat,Simple_repeat,1,29,0,30155989,30156018 -6 + chr8 30156018 30156121 chr8,30156018,30156121,-,AluJr,SINE,Alu,-177,135,31,30155841,30156151 +6 - chr8 30176696 30176888 chr8,30176696,30176994,+,AluSx,SINE,Alu,1,304,-8,30176696,30177002 -2 + chr8 30180750 30180888 chr8,30180750,30181046,+,AluJr,SINE,Alu,2,307,-5,30180749,30181051 -1 + chr8 30197404 30197608 chr8,30197240,30197608,+,L1MB5,LINE,L1,6284,6642,-30,30190957,30197638 +1 + chr8 30197624 30197946 chr8,30197624,30197946,+,MLT1A0,LTR,ERVL-MaLR,19,365,0,30197606,30197946 +6 + chr8 30383250 30383362 chr8,30383250,30383386,+,FLAM_C,SINE,Alu,8,131,-2,30383243,30383388 -2 + chr8 30596914 30597039 chr8,30595904,30597171,-,L1MEc,LINE,L1,-4730,2307,815,30591174,30597985 -1 - chr8 30597358 30597476 chr8,30597358,30597476,-,L1MEc,LINE,L1,-5966,457,339,30591392,30597814 -6 - chr8 31171123 31171190 chr8,31170985,31171190,-,MIRb,SINE,MIR,-46,222,8,31170939,31171197 +5 - chr8 31171249 31171318 chr8,31171249,31171461,+,L1P3,LINE,L1,5210,5425,-749,31166040,31172210 -2 + chr8 31176740 31176917 chr8,31176740,31176917,-,LTR86B1,LTR,ERVL,-6,487,302,31176734,31177218 +1 - chr8 31176927 31176942 chr8,31176927,31176942,-,MADE1,DNA,TcMar-Mariner,-2,78,68,31176925,31177009 +6 - chr8 31176942 31177006 chr8,31176942,31177294,+,MER51A,LTR,ERV1,1,333,-301,31176942,31177595 -1 + chr8 31177095 31177167 chr8,31176942,31177294,+,MER51A,LTR,ERV1,1,333,-301,31176942,31177595 -1 + chr8 31341663 31341864 chr8,31340945,31341864,-,Charlie1a,DNA,hAT-Charlie,-480,975,1,31340465,31341864 -2 - chr8 31344131 31344317 chr8,31343898,31344317,+,MSTB1,LTR,ERVL-MaLR,1,432,0,31343898,31344317 +2 + chr8 31346290 31346427 chr8,31346264,31346427,-,AluJb,SINE,Alu,-8,304,142,31346256,31346568 -2 - chr8 31384157 31384279 chr8,31382988,31387383,+,L1MA3,LINE,L1,3386,7722,-2,31379603,31387385 +5 + chr8 31497423 31497556 chr8,31497170,31497771,+,LTR50,LTR,ERVL,12,791,-4,31497159,31497775 +1 + chr8 31498419 31498578 chr8,31498161,31498578,-,L1MC,LINE,L1,-2316,3830,3383,31495845,31501960 -2 - chr8 32026231 32026364 chr8,32026231,32027122,-,HAL1b,LINE,L1,-623,1798,885,32025608,32028006 -1 - chr8 32029379 32029485 chr8,32029315,32029721,-,MER57A1,LTR,ERV1,-4,428,1,32029311,32029721 -3 - chr8 32171382 32171458 chr8,32171360,32177485,+,L1PA4,LINE,L1,1,6149,-6,32171360,32177491 +1 + chr8 32287101 32287135 chr8,32287025,32287135,+,MSTB1,LTR,ERVL-MaLR,320,429,-3,32286706,32287138 +2 + chr8 32287135 32287415 chr8,32287135,32287415,-,MLT1H,LTR,ERVL-MaLR,-246,303,1,32286889,32287415 -6 - chr8 32441420 32441436 chr8,32441420,32441623,+,AluJo,SINE,Alu,86,287,-25,32441335,32441648 +4 + chr8 32767705 32767759 chr8,32767705,32767759,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,55,0,32767705,32767759 +6 + chr8 32996178 32996316 chr8,32995180,32996452,-,L1MA2,LINE,L1,-6242,1323,12,32988938,32996463 -1 - chr8 33041635 33041771 chr8,33041205,33042594,-,L1MC3,LINE,L1,-15,7770,6373,33041190,33048966 -3 - chr8 33044367 33044478 chr8,33044341,33044478,-,MIR,SINE,MIR,-105,157,9,33044236,33044486 -2 - chr8 33610759 33611036 chr8,33610727,33611036,-,AluSx,SINE,Alu,-6,306,1,33610721,33611036 -2 - chr8 33611036 33611058 chr8,33611036,33611233,-,MER110-int,LTR,ERV1,-496,4151,3976,33610540,33615208 -4 - chr8 33755777 33755905 chr8,33749669,33756203,-,L1PB1,LINE,L1,-8,6859,255,33749661,33756457 -1 - chr8 33973709 33973977 chr8,33973709,33973977,-,MLT1D,LTR,ERVL-MaLR,-2,503,248,33973707,33974224 +6 - chr8 33973978 33973991 chr8,33973978,33974569,+,L1PA17,LINE,L1,5553,6151,-15,33968426,33974584 -2 + chr8 34005240 34005336 chr8,34005156,34005525,-,THE1C,LTR,ERVL-MaLR,0,375,1,34005156,34005525 +3 - chr8 34034886 34034924 chr8,34034526,34036168,-,ERV3-16A3_I-int,LTR,ERVL,-828,4398,2768,34033698,34038935 -3 - chr8 34038363 34038639 chr8,34038339,34038639,-,AluSc,SINE,Alu,-10,299,2,34038329,34038640 -5 - chr8 34038683 34039008 chr8,34038683,34039132,+,MER4A1,LTR,ERV1,2,472,0,34038682,34039132 +5 + chr8 34174886 34175013 chr8,34174849,34181329,+,L1PB1,LINE,L1,273,6864,-3,34174577,34181332 +1 + chr8 34184487 34184612 chr8,34184357,34184612,-,MIRb,SINE,MIR,-6,262,1,34184351,34184612 -2 - chr8 34228439 34228512 chr8,34228222,34228628,-,L1MDa,LINE,L1,-6179,454,34,34222043,34228661 -1 - chr8 34248724 34248795 chr8,34248142,34248795,+,LTR12B,LTR,ERV1,1,667,0,34248142,34248795 -4 + chr8 34297277 34297338 chr8,34297277,34303341,+,L1P3,LINE,L1,8,6086,-401,34297270,34303742 +4 + chr8 34340138 34340212 chr8,34340138,34340268,+,MLT1I-int,LTR,ERVL-MaLR,1250,1382,-5,34338889,34340273 +4 + chr8 34792758 34792881 chr8,34792656,34792881,-,MamTip2,DNA,hAT-Tip100,-5,300,78,34792651,34792958 -2 - chr8 34792858 34792943 chr8,34792858,34792943,-,MIR3,SINE,MIR,-24,184,100,34792834,34793042 -6 - chr8 34864657 34864779 chr8,34864561,34864779,-,MIR,SINE,MIR,-31,237,5,34864530,34864783 -2 - chr8 35254780 35254906 chr8,35254780,35254906,+,L2b,LINE,L2,3242,3375,0,35251539,35254906 +6 + chr8 35255139 35255233 chr8,35255139,35255233,-,OldhAT1,DNA,hAT-Ac,-2212,636,543,35252927,35255775 -6 - chr8 35256175 35256271 chr8,35256175,35256271,+,L2c,LINE,L2,3291,3387,0,35252885,35256271 +6 + chr8 35256324 35256487 chr8,35256324,35256487,-,L1PA7,LINE,L1,-6,6148,5985,35256318,35262471 -6 - chr8 35256558 35256605 chr8,35256558,35256706,-,MIRc,SINE,MIR,-67,201,36,35256491,35256741 -5 - chr8 35892554 35892671 chr8,35892376,35892671,-,AluSx1,SINE,Alu,-20,292,1,35892356,35892671 -2 - chr8 35900383 35900504 chr8,35900362,35900659,-,AluSx4,SINE,Alu,-13,297,1,35900349,35900659 -3 - chr8 35926034 35926120 chr8,35925836,35926582,+,HERVL40-int,LTR,ERVL,3733,4492,-1038,35922104,35927620 +3 + chr8 35970613 35970665 chr8,35970228,35970804,-,L1ME2z,LINE,L1,-3,6441,5810,35970225,35976613 -5 - chr8 36034890 36034948 chr8,36034890,36035015,+,MLT1D,LTR,ERVL-MaLR,368,497,-8,36034523,36035023 -2 + chr8 36093978 36094025 chr8,36093955,36094402,+,LTR49,LTR,ERV1,3,441,-154,36093953,36094556 -1 + chr8 36537391 36537476 chr8,36536401,36537484,-,MER11A,LTR,ERVK,0,1266,1,36536401,36537484 +5 - chr8 36765103 36765205 chr8,36765103,36765205,+,AluSg7,SINE,Alu,142,242,-67,36764962,36765272 -2 + chr8 36774224 36774280 chr8,36774224,36774338,+,MIR3,SINE,MIR,64,201,-7,36774161,36774345 -2 + chr8 36779038 36779143 chr8,36778984,36779143,+,L2b,LINE,L2,2777,2931,-488,36776208,36779631 -4 + chr8 36779143 36779164 chr8,36779143,36779488,+,MER61A,LTR,ERV1,1,341,0,36779143,36779488 -1 + chr8 37326575 37326586 chr8,37326552,37326586,+,(T)n,Simple_repeat,Simple_repeat,1,34,0,37326552,37326586 -5 + chr8 37326595 37326659 chr8,37326595,37326659,+,(CTCCC)n,Simple_repeat,Simple_repeat,1,65,0,37326595,37326659 -6 + chr8 37328230 37328286 chr8,37328230,37328286,+,(CCTCT)n,Simple_repeat,Simple_repeat,1,60,0,37328230,37328286 -6 + chr8 37328583 37328679 chr8,37328583,37328679,-,MIR3,SINE,MIR,-60,148,51,37328523,37328729 +6 - chr8 37330455 37330745 chr8,37330455,37330745,+,AluSx,SINE,Alu,3,289,-23,37330453,37330768 -5 + chr8 37330928 37330981 chr8,37330928,37330981,+,(CA)n,Simple_repeat,Simple_repeat,1,54,0,37330928,37330981 -6 + chr8 37331767 37331984 chr8,37331719,37332166,-,MLT1C,LTR,ERVL-MaLR,-31,436,8,37331688,37332173 +1 - chr8 37405439 37405553 chr8,37405166,37405553,+,MLT1B,LTR,ERVL-MaLR,3,386,-4,37405164,37405557 -5 + chr8 37406696 37406724 chr8,37406665,37406876,-,MIR,SINE,MIR,-3,259,48,37406662,37406923 +1 - chr8 37431749 37431787 chr8,37431591,37431889,-,MLT1J,LTR,ERVL-MaLR,-200,312,3,37431391,37431891 +3 - chr8 37450763 37450848 chr8,37450500,37450913,-,LTR16E2,LTR,ERVL,-45,523,125,37450455,37451037 +5 - chr8 37473179 37473210 chr8,37473179,37473411,+,AluJr,SINE,Alu,84,310,-2,37473096,37473413 -2 + chr8 37531312 37531398 chr8,37531289,37531579,+,AluSx,SINE,Alu,1,293,-19,37531289,37531598 -3 + chr8 37597632 37597726 chr8,37597632,37597726,+,MIR3,SINE,MIR,100,200,-8,37597533,37597734 -5 + chr8 37598207 37598331 chr8,37598207,37598331,+,MIR3,SINE,MIR,27,153,-55,37598181,37598386 -6 + chr8 37599172 37599223 chr8,37599172,37599223,+,(GTT)n,Simple_repeat,Simple_repeat,1,52,0,37599172,37599223 -6 + chr8 37599819 37599858 chr8,37599819,37600081,+,Plat_L3,LINE,CR1,3294,3540,-46,37596526,37600127 -1 + chr8 37600537 37600727 chr8,37600453,37600732,+,AluJr,SINE,Alu,1,280,-32,37600453,37600764 -5 + chr8 37602794 37602873 chr8,37602697,37602882,+,MIR,SINE,MIR,58,252,-10,37602640,37602892 -3 + chr8 37602980 37603046 chr8,37602977,37603144,-,L3,LINE,CR1,-54,4045,3866,37602923,37607009 +3 - chr8 37625739 37625873 chr8,37625431,37625958,-,MLT1M,LTR,ERVL-MaLR,-3,539,113,37625428,37626070 +1 - chr8 37674013 37674272 chr8,37674013,37674272,-,AluJr,SINE,Alu,-2,310,39,37674011,37674310 +6 - chr8 37733478 37733507 chr8,37733478,37733507,+,(TG)n,Simple_repeat,Simple_repeat,1,30,0,37733478,37733507 +6 + chr8 37733560 37733742 chr8,37733560,37733742,+,MIRb,SINE,MIR,60,264,-4,37733501,37733746 +6 + chr8 37734786 37734826 chr8,37734786,37734826,-,L1MA6,LINE,L1,-2,6298,6258,37734784,37741083 +6 - chr8 37735979 37736256 chr8,37735979,37736256,+,AluJr,SINE,Alu,1,290,-22,37735979,37736278 -6 + chr8 37736501 37736548 chr8,37736501,37736548,+,G-rich,Low_complexity,Low_complexity,1,47,0,37736501,37736548 -6 + chr8 37860339 37860646 chr8,37860339,37860646,-,AluSz6,SINE,Alu,-9,303,1,37860330,37860646 -6 - chr8 38062881 38063058 chr8,38062759,38063058,+,AluSz6,SINE,Alu,1,299,-13,38062759,38063071 +1 + chr8 38063208 38063333 chr8,38063208,38063333,+,AluJr,SINE,Alu,1,127,-185,38063208,38063518 +6 + chr8 38063411 38063506 chr8,38063411,38063506,-,L2c,LINE,L2,-24,3363,3271,38063387,38066776 -6 - chr8 38099471 38099567 chr8,38099426,38099567,+,FLAM_C,SINE,Alu,7,218,-84,38099420,38099651 +1 + chr8 38099710 38099813 chr8,38099710,38099813,+,MER112,DNA,hAT-Charlie,146,261,0,38099565,38099813 +6 + chr8 38123274 38123319 chr8,38123078,38123383,-,AluSx3,SINE,Alu,-6,305,1,38123072,38123383 -1 - chr8 38124077 38124140 chr8,38123883,38124140,-,AluSx,SINE,Alu,-55,257,1,38123828,38124140 -2 - chr8 38124204 38124510 chr8,38124204,38124510,-,AluJb,SINE,Alu,-10,302,1,38124194,38124510 -6 - chr8 38124513 38124605 chr8,38124513,38124605,-,AluJb,SINE,Alu,-10,302,211,38124503,38124815 -6 - chr8 38148781 38148839 chr8,38148781,38148939,-,MIR3,SINE,MIR,-24,184,24,38148757,38148962 -4 - chr8 38275888 38275914 chr8,38275855,38275914,-,L2,LINE,L2,-1174,2245,2182,38274681,38278095 -1 - chr8 38425950 38426014 chr8,38425885,38426014,-,MIRc,SINE,MIR,-74,188,68,38425811,38426081 -2 - chr8 38543652 38543792 chr8,38543634,38543792,-,MLT1J2,LTR,ERVL-MaLR,-29,419,257,38543605,38544048 +5 - chr8 38551455 38551476 chr8,38551276,38551476,-,L1MEi,LINE,L1,-1990,222,5,38549286,38551480 +4 - chr8 38551523 38551578 chr8,38551523,38551829,-,L2,LINE,L2,-457,2962,2636,38551066,38554464 +2 - chr8 38554893 38554955 chr8,38554893,38555142,-,L2c,LINE,L2,-1,3425,3132,38554892,38558273 +2 - chr8 38700662 38700877 chr8,38700662,38700877,-,MLT1K,LTR,ERVL-MaLR,-2,593,356,38700660,38701232 +6 - chr8 38700954 38701055 chr8,38700902,38701055,-,MLT1K,LTR,ERVL-MaLR,-323,272,112,38700579,38701166 +4 - chr8 38802188 38802209 chr8,38801901,38802209,-,AluJb,SINE,Alu,0,312,1,38801901,38802209 -2 - chr8 38802209 38802231 chr8,38802209,38802231,-,L1MB8,LINE,L1,-1678,4468,4446,38800531,38806676 -6 - chr8 38802261 38802296 chr8,38802261,38802584,+,MER1B,DNA,hAT-Charlie,1,339,0,38802261,38802584 +5 + chr8 38844866 38844899 chr8,38844652,38844899,-,L1M5,LINE,L1,-906,5240,4984,38843746,38849882 +5 - chr8 38844923 38844970 chr8,38844923,38845223,-,AluSx1,SINE,Alu,-11,301,1,38844912,38845223 +2 - chr8 38846158 38846313 chr8,38846010,38846313,+,AluYc3,SINE,Alu,1,300,0,38846010,38846313 -4 + chr8 38972434 38972484 chr8,38972176,38972484,-,AluJr4,SINE,Alu,-8,304,1,38972168,38972484 +4 - chr8 38972722 38972767 chr8,38972722,38972767,+,MIR,SINE,MIR,2,46,-216,38972721,38972983 -6 + chr8 38972943 38973011 chr8,38972943,38973103,-,AluJb,SINE,Alu,-18,294,137,38972925,38973239 +1 - chr8 39575581 39575625 chr8,39575574,39575625,+,(CAG)n,Simple_repeat,Simple_repeat,1,51,0,39575574,39575625 +1 + chr8 39578414 39578471 chr8,39578405,39579434,+,MER11A,LTR,ERVK,1,1266,0,39578405,39579434 +3 + chr8 39903775 39904021 chr8,39903711,39904183,+,LTR49-int,LTR,ERV1,1213,1661,-4670,39902499,39908853 -5 + chr8 39920635 39920852 chr8,39920546,39920852,+,AluSx1,SINE,Alu,1,306,-6,39920546,39920858 -4 + chr8 39987384 39987498 chr8,39987384,39987550,+,MIR3,SINE,MIR,15,186,-22,39987370,39987572 -2 + chr8 39995129 39995248 chr8,39995129,39995270,+,(TTC)n,Simple_repeat,Simple_repeat,1,142,0,39995129,39995270 -1 + chr8 40104169 40104237 chr8,40104107,40104237,-,L3,LINE,CR1,-201,3898,3757,40103906,40107993 -1 - chr8 40107894 40107935 chr8,40107894,40108017,-,L1ME3D,LINE,L1,-14,6228,6107,40107880,40114123 -5 - chr8 40114651 40114743 chr8,40114457,40114743,-,AluSz,SINE,Alu,-22,290,2,40114435,40114744 -1 - chr8 40125526 40125653 chr8,40125284,40125720,+,MLT2F,LTR,ERVL,207,646,-17,40125078,40125737 +3 + chr8 40127081 40127174 chr8,40127059,40127174,-,FLAM_C,SINE,Alu,-168,134,22,40126891,40127195 -2 - chr8 40127198 40127468 chr8,40127198,40127615,-,MLT1C,LTR,ERVL-MaLR,0,467,1,40127198,40127615 -5 - chr8 40171717 40171793 chr8,40171637,40171841,-,MIRb,SINE,MIR,-11,257,35,40171626,40171875 -3 - chr8 40172361 40172500 chr8,40172361,40172500,+,MIRb,SINE,MIR,41,180,-88,40172321,40172588 +6 + chr8 40304687 40304774 chr8,40304662,40304774,-,AluJr,SINE,Alu,-188,124,1,40304474,40304774 +4 - chr8 40311192 40311261 chr8,40310669,40311313,+,MER31-int,LTR,ERV1,883,1545,-3391,40309787,40314704 -1 + chr8 40370028 40370096 chr8,40369637,40370169,+,L1MB5,LINE,L1,5631,6174,0,40364007,40370169 +1 + chr8 40370756 40370792 chr8,40370716,40370792,-,AluSp,SINE,Alu,-16,297,219,40370700,40371010 -2 - chr8 40401015 40401073 chr8,40400984,40401298,-,MER61C,LTR,ERV1,0,428,71,40400984,40401368 -3 - chr8 40401669 40401848 chr8,40401388,40402076,+,LTR38C,LTR,ERV1,1,711,0,40401388,40402076 +5 + chr8 40519767 40520158 chr8,40519767,40520287,-,L1MA6,LINE,L1,0,6300,5783,40519767,40526069 +1 - chr8 40900075 40900143 chr8,40900075,40900213,+,L2c,LINE,L2,3235,3369,-18,40896841,40900231 -2 + chr8 41435391 41435433 chr8,41435391,41435433,+,(GGA)n,Simple_repeat,Simple_repeat,1,42,0,41435391,41435433 +6 + chr8 41439837 41439910 chr8,41439793,41439910,-,L2a,LINE,L2,0,3426,3306,41439793,41443215 -2 - chr8 41440364 41440419 chr8,41440274,41440671,-,MSTB,LTR,ERVL-MaLR,0,426,1,41440274,41440671 -5 - chr8 41534155 41534370 chr8,41534120,41534370,+,AluJb,SINE,Alu,1,246,-66,41534120,41534436 -5 + chr8 41534370 41534410 chr8,41534370,41534636,+,Charlie17,DNA,hAT-Charlie,2592,2911,-5,41531779,41534641 -2 + chr8 41542102 41542116 chr8,41542102,41542410,+,AluSx3,SINE,Alu,2,310,-1,41542101,41542411 -2 + chr8 41543956 41544006 chr8,41543702,41544006,-,AluSq,SINE,Alu,-11,302,1,41543691,41544006 +4 - chr8 41544056 41544291 chr8,41544056,41544291,-,L2b,LINE,L2,-223,3152,2902,41543833,41547192 +6 - chr8 41544352 41544429 chr8,41544352,41544429,-,MIR3,SINE,MIR,-124,84,11,41544228,41544439 +6 - chr8 41544459 41544522 chr8,41544459,41544522,-,MER5A1,DNA,hAT-Charlie,-2,164,102,41544457,41544623 +6 - chr8 41544761 41544859 chr8,41544761,41544859,-,MER5A1,DNA,hAT-Charlie,-50,116,8,41544711,41544866 +1 - chr8 41660991 41661042 chr8,41660975,41661042,-,MIRc,SINE,MIR,-1,267,196,41660974,41661237 -1 - chr8 41661042 41661175 chr8,41661042,41661175,-,FLAM_C,SINE,Alu,-10,133,1,41661032,41661175 -6 - chr8 41661175 41661262 chr8,41661175,41661262,-,MIRb,SINE,MIR,-73,195,115,41661102,41661376 -6 - chr8 41664134 41664189 chr8,41664134,41664189,-,MIRc,SINE,MIR,-161,107,50,41663973,41664238 -6 - chr8 41664199 41664248 chr8,41664199,41664512,+,AluJr4,SINE,Alu,11,312,0,41664189,41664512 +5 + chr8 41828225 41828271 chr8,41828225,41828271,+,(CCCCG)n,Simple_repeat,Simple_repeat,1,46,0,41828225,41828271 -6 + chr8 41829389 41829524 chr8,41829389,41829524,-,MIR,SINE,MIR,-107,161,23,41829282,41829546 +6 - chr8 41829654 41829934 chr8,41829654,41829958,+,AluY,SINE,Alu,1,304,-7,41829654,41829965 -1 + chr8 42139506 42139624 chr8,42139506,42139624,-,L1ME4b,LINE,L1,-39,853,759,42139467,42140382 +6 - chr8 42139661 42139752 chr8,42139661,42139860,-,L1ME4b,LINE,L1,-236,656,447,42139425,42140306 +1 - chr8 42151843 42152040 chr8,42151843,42152040,-,MIR,SINE,MIR,-60,202,2,42151783,42152041 +6 - chr8 42233675 42233859 chr8,42233579,42234255,-,LTR8,LTR,ERV1,0,691,1,42233579,42234255 +5 - chr8 42249086 42249361 chr8,42249086,42249384,+,AluJb,SINE,Alu,1,298,-14,42249086,42249398 -2 + chr8 42255328 42255514 chr8,42255306,42255744,-,MER31-int,LTR,ERV1,-802,4134,3687,42254504,42259430 +5 - chr8 42263414 42263472 chr8,42263414,42263806,-,MER34C_,LTR,ERV1,0,585,192,42263414,42263997 +2 - chr8 42270352 42270388 chr8,42270210,42270444,+,AluJo,SINE,Alu,1,273,-39,42270210,42270483 -1 + chr8 42537896 42538075 chr8,42537896,42538075,+,MIR,SINE,MIR,25,228,-2,42537872,42538077 -6 + chr8 42538206 42538297 chr8,42538194,42538297,+,(TA)n,Simple_repeat,Simple_repeat,1,113,0,42538194,42538297 -4 + chr8 42705583 42705693 chr8,42705333,42705693,+,MSTD,LTR,ERVL-MaLR,1,396,0,42705333,42705693 -5 + chr8 42705720 42705863 chr8,42705720,42705863,-,MamTip3,DNA,hAT-Tip100,-94,406,253,42705626,42706115 +6 - chr8 42705880 42705993 chr8,42705880,42706628,-,L2a,LINE,L2,-2,3424,2536,42705878,42709163 +2 - chr8 42721802 42721946 chr8,42721762,42722041,-,MLT1K,LTR,ERVL-MaLR,-273,322,8,42721489,42722048 +1 - chr8 46822237 46822428 chr8,46822090,46822581,-,BSR/Beta,Satellite,Satellite,-27,491,1,46822063,46822581 -1 - chr8 46840816 46840935 chr8,46840448,46841071,-,BSR/Beta,Satellite,Satellite,-20,621,1,46840428,46841071 -1 - chr8 46841045 46841071 chr8,46840448,46841071,-,BSR/Beta,Satellite,Satellite,-20,621,1,46840428,46841071 -1 - chr8 46842277 46842352 chr8,46842058,46843113,-,BSR/Beta,Satellite,Satellite,0,1051,1,46842058,46843113 -3 - chr8 46843350 46843426 chr8,46843130,46844808,-,BSR/Beta,Satellite,Satellite,-4,1697,1,46843126,46844808 -3 - chr8 46844189 46844296 chr8,46843130,46844808,-,BSR/Beta,Satellite,Satellite,-4,1697,1,46843126,46844808 -3 - chr8 46846029 46846081 chr8,46845442,46846239,-,BSR/Beta,Satellite,Satellite,-7,792,1,46845435,46846239 -3 - chr8 46847976 46848100 chr8,46847750,46848683,-,BSR/Beta,Satellite,Satellite,-26,939,1,46847724,46848683 -5 - chr8 46848844 46849475 chr8,46848844,46849475,-,BSR/Beta,Satellite,Satellite,-20,622,1,46848824,46849475 -6 - chr8 46850668 46850743 chr8,46850486,46852388,-,BSR/Beta,Satellite,Satellite,-1,1886,1,46850485,46852388 -3 - chr8 46854107 46854307 chr8,46854053,46855681,-,BSR/Beta,Satellite,Satellite,-46,1619,1,46854007,46855681 -5 - chr8 46934178 46934372 chr8,46933972,46934372,+,MER31B,LTR,ERV1,4,466,0,46933969,46934372 -4 + chr8 47527397 47527619 chr8,47526731,47527619,+,L1MC2,LINE,L1,1,977,-5774,47526731,47533393 +1 + chr8 48428518 48428585 chr8,48428518,48428585,+,GA-rich,Low_complexity,Low_complexity,1,67,0,48428518,48428585 -6 + chr8 48429231 48429272 chr8,48429231,48429272,+,G-rich,Low_complexity,Low_complexity,1,42,0,48429231,48429272 -6 + chr8 48429944 48430128 chr8,48429944,48430128,-,L2c,LINE,L2,-149,3238,3044,48429795,48433171 +6 - chr8 48430816 48430842 chr8,48430816,48430842,+,(A)n,Simple_repeat,Simple_repeat,1,26,0,48430816,48430842 -6 + chr8 48552142 48552223 chr8,48552142,48552223,+,(TTC)n,Simple_repeat,Simple_repeat,1,83,0,48552142,48552223 -6 + chr8 48552286 48552556 chr8,48552286,48552590,+,AluJo,SINE,Alu,7,309,-3,48552280,48552593 -2 + chr8 48591915 48592210 chr8,48591915,48592210,-,L2a,LINE,L2,-96,3330,3017,48591819,48595226 -6 - chr8 48592222 48592384 chr8,48592222,48592384,+,L2,LINE,L2,2769,2947,-472,48589454,48592856 +6 + chr8 48592728 48592766 chr8,48592728,48592766,+,(CTTAAG)n,Simple_repeat,Simple_repeat,1,39,0,48592728,48592766 +6 + chr8 48592925 48593245 chr8,48592925,48593245,-,L2a,LINE,L2,-735,2684,2341,48592190,48595585 -6 - chr8 48593893 48594503 chr8,48593893,48594503,-,L1MD2,LINE,L1,-10,6349,5660,48593883,48600162 -6 - chr8 48594525 48594586 chr8,48594525,48594586,-,L4_C_Mam,LINE,RTE-X,-934,4204,4145,48593591,48598730 -6 - chr8 48594586 48594621 chr8,48594586,48594888,-,AluY,SINE,Alu,-14,297,2,48594572,48594889 -5 - chr8 48597458 48597518 chr8,48597437,48597615,+,MIRb,SINE,MIR,53,230,-38,48597385,48597653 -5 + chr8 48600672 48600736 chr8,48600672,48600761,-,L1MB4,LINE,L1,-6434,173,83,48594238,48600843 +2 - chr8 48697203 48697326 chr8,48697203,48697326,+,Charlie4a,DNA,hAT-Charlie,370,506,-2,48696834,48697328 +6 + chr8 49168539 49168559 chr8,49167941,49168559,-,MER70B,LTR,ERVL,-12,566,5,49167929,49168563 -1 - chr8 49168563 49168809 chr8,49168563,49169103,-,L1M4,LINE,L1,-1841,4803,4241,49166722,49173343 -1 - chr8 49224938 49225028 chr8,49224780,49225028,-,AluY,SINE,Alu,-45,266,26,49224735,49225053 -2 - chr8 49228140 49228220 chr8,49227775,49229632,+,L1MB8,LINE,L1,3829,5779,-405,49223947,49230037 +5 + chr8 49228558 49228925 chr8,49227775,49229632,+,L1MB8,LINE,L1,3829,5779,-405,49223947,49230037 +5 + chr8 49496763 49496845 chr8,49496681,49496845,-,MIR,SINE,MIR,-38,224,70,49496643,49496914 +5 - chr8 49512127 49512180 chr8,49511392,49512268,-,L1M4,LINE,L1,-4597,2071,434,49506795,49512701 +1 - chr8 49537157 49537231 chr8,49537053,49537231,-,MIR,SINE,MIR,-74,188,15,49536979,49537245 +4 - chr8 49544451 49544596 chr8,49544412,49544756,-,THE1B,LTR,ERVL-MaLR,0,364,1,49544412,49544756 +3 - chr8 49819325 49819439 chr8,49819325,49819457,+,FLAM_C,SINE,Alu,1,133,-10,49819325,49819467 -2 + chr8 49906900 49906976 chr8,49906900,49906976,+,(AC)n,Simple_repeat,Simple_repeat,1,76,0,49906900,49906976 -6 + chr8 49907377 49907446 chr8,49907377,49907451,-,MIRb,SINE,MIR,-91,177,97,49907286,49907547 +1 - chr8 50381906 50382243 chr8,50381815,50382243,-,MLT2A1,LTR,ERVL,-40,515,1,50381775,50382243 -2 - chr8 51257688 51257734 chr8,51257498,51257734,+,MLT1J1,LTR,ERVL-MaLR,44,284,-160,51257455,51257894 +1 + chr8 51895957 51896055 chr8,51895938,51896245,-,AluSx1,SINE,Alu,0,312,1,51895938,51896245 +5 - chr8 51896191 51896245 chr8,51895938,51896245,-,AluSx1,SINE,Alu,0,312,1,51895938,51896245 +5 - chr8 51899840 51900132 chr8,51899840,51900132,+,AluSq2,SINE,Alu,1,304,-9,51899840,51900141 +6 + chr8 51911420 51911560 chr8,51911382,51911560,-,AluJo,SINE,Alu,0,312,135,51911382,51911694 -2 - chr8 51913057 51913180 chr8,51913036,51913349,-,AluJr,SINE,Alu,-11,301,1,51913025,51913349 -5 - chr8 51950284 51950599 chr8,51949949,51950599,+,L1MB2,LINE,L1,5531,6169,-2,51944419,51950601 +1 + chr8 52007944 52008063 chr8,52007886,52008063,-,Zaphod,DNA,hAT-Tip100,-75,3956,3888,52007811,52011950 +4 - chr8 52022416 52022772 chr8,52022400,52022772,+,L2a,LINE,L2,2755,3167,-259,52019646,52023031 +2 + chr8 52022825 52022950 chr8,52022825,52022950,+,L2a,LINE,L2,3247,3375,0,52019579,52022950 +6 + chr8 52154732 52154892 chr8,52154732,52154897,+,AluJo,SINE,Alu,137,302,-10,52154596,52154907 +5 + chr8 52199201 52199323 chr8,52199201,52199323,+,MIRb,SINE,MIR,119,245,-23,52199083,52199346 +6 + chr8 52296474 52296560 chr8,52296474,52296659,+,MIRb,SINE,MIR,1,183,-85,52296474,52296744 +4 + chr8 52722903 52723016 chr8,52722729,52723016,+,Kanga1b,DNA,TcMar-Tc2,349,669,-110,52722381,52723126 +1 + chr8 53177571 53177691 chr8,53177213,53177691,+,LTR10B,LTR,ERV1,1,505,0,53177213,53177691 +1 + chr8 53177691 53177719 chr8,53177691,53177719,-,LTR55,LTR,ERVL?,-520,28,1,53177171,53177719 -6 - chr8 53177749 53178050 chr8,53177749,53178170,-,L2a,LINE,L2,-1217,2202,1763,53176532,53179932 -4 - chr8 53242528 53242683 chr8,53242503,53242805,-,AluYm1,SINE,Alu,-9,302,1,53242494,53242805 -5 - chr8 53389022 53389369 chr8,53389022,53389369,-,LTR86B1,LTR,ERVL,0,493,162,53389022,53389530 +6 - chr8 53389371 53389715 chr8,53389371,53389715,-,MLT1A0,LTR,ERVL-MaLR,-11,354,4,53389360,53389718 +6 - chr8 53389748 53389857 chr8,53389748,53389857,-,LTR86B1,LTR,ERVL,-384,109,1,53389364,53389857 +6 - chr8 53395605 53395756 chr8,53395605,53395842,-,MLT1H,LTR,ERVL-MaLR,-302,247,7,53395303,53395848 +2 - chr8 53395899 53395946 chr8,53395891,53397071,-,MLT1H-int,LTR,ERVL-MaLR,-22,1387,132,53395869,53397202 +1 - chr8 53515170 53515311 chr8,53515134,53515311,-,MER103C,DNA,hAT-Charlie,-42,255,79,53515092,53515389 -5 - chr8 53515171 53515311 chr8,53515134,53515311,-,MER103C,DNA,hAT-Charlie,-42,255,79,53515092,53515389 +5 - chr8 53515519 53515606 chr8,53515519,53515939,-,MLT1B,LTR,ERVL-MaLR,-20,370,1,53515499,53515939 -5 - chr8 53515874 53515905 chr8,53515519,53515939,-,MLT1B,LTR,ERVL-MaLR,-20,370,1,53515499,53515939 -5 - chr8 53515519 53515939 chr8,53515519,53515939,-,MLT1B,LTR,ERVL-MaLR,-20,370,1,53515499,53515939 +5 - chr8 53515971 53516343 chr8,53515971,53516343,+,MLT1I,LTR,ERVL-MaLR,35,407,-4,53515937,53516347 -6 + chr8 53516491 53516792 chr8,53516491,53516792,-,L2,LINE,L2,-959,2460,2164,53515532,53518955 +6 - chr8 53523329 53523628 chr8,53523216,53523628,-,HERVE_a-int,LTR,ERV1,-3496,4351,3939,53519720,53527566 +4 - chr8 53523623 53523931 chr8,53523623,53524714,-,HERV3-int,LTR,ERV1,-6946,1480,327,53516677,53525040 +1 - chr8 54042989 54043074 chr8,54042736,54043074,-,L1MC5,LINE,L1,-2120,7184,7063,54040616,54050136 +5 - chr8 54043080 54043218 chr8,54043080,54043233,-,AluJr,SINE,Alu,-30,282,130,54043050,54043362 +2 - chr8 54045557 54045629 chr8,54045543,54045686,+,L3,LINE,CR1,3897,4049,-50,54041647,54045736 -1 + chr8 54561877 54561927 chr8,54561877,54561927,+,A-rich,Low_complexity,Low_complexity,1,50,0,54561877,54561927 +5 + chr8 55135354 55135422 chr8,55135354,55135422,+,L2a,LINE,L2,3352,3419,-7,55132003,55135429 -6 + chr8 55161577 55161644 chr8,55161577,55161684,+,MIR,SINE,MIR,122,229,-33,55161456,55161717 +4 + chr8 55517240 55517289 chr8,55516601,55517289,+,L1PB4,LINE,L1,5473,6156,0,55511129,55517289 -5 + chr8 55517359 55517735 chr8,55517359,55517735,-,L2b,LINE,L2,-57,3318,2912,55517302,55520646 +6 - chr8 55893780 55893991 chr8,55893780,55893991,-,AluJo,SINE,Alu,-1,311,125,55893779,55894115 -6 - chr8 55895577 55895628 chr8,55895507,55895628,+,AluJr,SINE,Alu,1,121,-191,55895507,55895819 +2 + chr8 55895640 55895739 chr8,55895640,55895821,+,MIRc,SINE,MIR,47,235,-33,55895594,55895854 +5 + chr8 56013487 56013570 chr8,56013270,56013570,-,AluSx,SINE,Alu,-14,298,1,56013256,56013570 -1 - chr8 56014018 56014084 chr8,56014018,56014084,-,MIRb,SINE,MIR,-67,201,135,56013951,56014218 -6 - chr8 56222688 56222923 chr8,56222661,56222923,-,L1ME4b,LINE,L1,-463,461,188,56222198,56223110 -1 - chr8 56489098 56489250 chr8,56488917,56489306,+,MSTB,LTR,ERVL-MaLR,1,401,-25,56488917,56489331 +1 + chr8 56534946 56535009 chr8,56534686,56535126,-,Tigger2a,DNA,TcMar-Tigger,0,434,3,56534686,56535128 +3 - chr8 56536758 56536931 chr8,56536574,56536931,-,MLT1A,LTR,ERVL-MaLR,0,374,1,56536574,56536931 +5 - chr8 56537106 56537203 chr8,56537106,56537275,+,MIR3,SINE,MIR,33,205,-3,56537074,56537278 -2 + chr8 56550321 56551666 chr8,56550321,56551666,+,L1P1,LINE,L1,10,1357,-4798,56550312,56556464 +6 + chr8 56551663 56552067 chr8,56551663,56553706,+,L1P1,LINE,L1,1979,4012,-2134,56549685,56555840 +5 + chr8 56559453 56559530 chr8,56559312,56559530,-,MIR,SINE,MIR,-5,257,17,56559307,56559546 +1 - chr8 56559645 56559823 chr8,56559645,56559848,-,L1MA7,LINE,L1,-98,6193,5984,56559547,56565831 +1 - chr8 56639901 56639952 chr8,56639657,56641906,-,MER34B-int,LTR,ERV1,-2112,6008,2699,56637545,56644604 +5 - chr8 56654908 56655049 chr8,56654877,56655161,-,MLT1D,LTR,ERVL-MaLR,-153,352,30,56654724,56655190 +3 - chr8 56656315 56656465 chr8,56656315,56656492,-,MamSINE1,SINE,tRNA-RTE,0,290,119,56656315,56656610 +1 - chr8 57201017 57201088 chr8,57200986,57201121,-,AluJo,SINE,Alu,-176,136,1,57200810,57201121 -5 - chr8 57202919 57203168 chr8,57202512,57203371,-,MER50-int,LTR,ERV1,-5544,1661,730,57196968,57204100 -5 - chr8 57218534 57218559 chr8,57218465,57218559,-,MLT1L,LTR,ERVL-MaLR,-399,211,116,57218066,57218674 -1 - chr8 57219056 57219138 chr8,57219003,57219613,-,MER50-int,LTR,ERV1,-5544,1661,973,57213459,57220585 -5 - chr8 57219379 57219613 chr8,57219003,57219613,-,MER50-int,LTR,ERV1,-5544,1661,973,57213459,57220585 -5 - chr8 57219613 57219623 chr8,57219613,57220044,-,MER50,LTR,ERV1,-308,426,1,57219305,57220044 -4 - chr8 57222169 57222203 chr8,57221845,57222203,-,MER50,LTR,ERV1,-128,606,257,57221717,57222459 -2 - chr8 57222205 57222271 chr8,57222205,57222350,+,THE1B,LTR,ERVL-MaLR,206,361,-3,57222000,57222353 +4 + chr8 57222595 57222696 chr8,57222399,57223076,-,HUERS-P3-int,LTR,ERV1,-6464,2455,1791,57215935,57224866 -3 - chr8 57229570 57229605 chr8,57229570,57229605,+,(TGAA)n,Simple_repeat,Simple_repeat,1,35,0,57229570,57229605 +6 + chr8 57231392 57231681 chr8,57231357,57231681,-,AluSz6,SINE,Alu,-6,306,1,57231351,57231681 -2 - chr8 57232190 57232238 chr8,57232190,57232238,+,(AC)n,Simple_repeat,Simple_repeat,1,48,0,57232190,57232238 +6 + chr8 57262192 57262264 chr8,57262192,57262264,+,L1MC,LINE,L1,4501,4571,-1575,57257692,57263839 +6 + chr8 57262368 57262673 chr8,57262368,57262673,+,L1M5,LINE,L1,4717,5052,-1094,57257652,57263767 +6 + chr8 57262760 57262822 chr8,57262760,57262822,+,A-rich,Low_complexity,Low_complexity,1,62,0,57262760,57262822 +6 + chr8 57265341 57265667 chr8,57265267,57265667,-,MSTC,LTR,ERVL-MaLR,-3,425,1,57265264,57265667 -2 - chr8 57265667 57265949 chr8,57265667,57265949,-,L1M4b,LINE,L1,-3630,3237,2975,57262037,57268923 -6 - chr8 57266029 57266119 chr8,57266029,57266119,+,MIRc,SINE,MIR,150,243,-25,57265880,57266144 +6 + chr8 57266163 57266450 chr8,57266163,57266450,+,AluSx4,SINE,Alu,5,290,-20,57266159,57266470 +6 + chr8 57282159 57282214 chr8,57282159,57282306,+,L1M5,LINE,L1,5531,5681,-443,57276629,57282749 +4 + chr8 57343822 57343947 chr8,57343822,57343947,+,MIRc,SINE,MIR,39,157,-111,57343784,57344058 +6 + chr8 57344945 57345140 chr8,57344945,57345348,-,L1MC4,LINE,L1,-145,7897,7444,57344800,57352791 -4 - chr8 57346694 57346727 chr8,57346631,57346727,-,MIR3,SINE,MIR,-3,205,100,57346628,57346826 -2 - chr8 57346812 57347063 chr8,57346812,57347104,+,L3,LINE,CR1,3758,4082,-17,57343055,57347121 +5 + chr8 57352460 57352577 chr8,57352432,57352656,-,AluJb,SINE,Alu,-10,302,76,57352422,57352731 -3 - chr8 57492884 57492975 chr8,57492877,57493170,-,HAL1,LINE,L1,-796,1711,1404,57492081,57494573 -1 - chr8 57545562 57545591 chr8,57545562,57545591,+,(AAACA)n,Simple_repeat,Simple_repeat,1,29,0,57545562,57545591 +6 + chr8 57746149 57746299 chr8,57745956,57746299,+,MLT1H1,LTR,ERVL-MaLR,10,368,-187,57745947,57746486 +1 + chr8 57746299 57746350 chr8,57746299,57746447,+,MER33,DNA,hAT-Charlie,1,117,-207,57746299,57746654 +4 + chr8 57748290 57748365 chr8,57748290,57748365,+,(CA)n,Simple_repeat,Simple_repeat,1,76,0,57748290,57748365 +6 + chr8 57748627 57748673 chr8,57748627,57748673,+,GA-rich,Low_complexity,Low_complexity,1,47,0,57748627,57748673 +6 + chr8 57889576 57889659 chr8,57889536,57889659,-,L1M5,LINE,L1,-2712,3434,3305,57886824,57892963 +5 - chr8 57889731 57889764 chr8,57889731,57889764,+,(AC)n,Simple_repeat,Simple_repeat,1,33,0,57889731,57889764 -6 + chr8 57889765 57890146 chr8,57889765,57891103,-,Tigger3b,DNA,TcMar-Tigger,-1,1230,1,57889764,57891103 +1 - chr8 57890601 57890809 chr8,57889765,57891103,-,Tigger3b,DNA,TcMar-Tigger,-1,1230,1,57889764,57891103 +1 - chr8 57978358 57978484 chr8,57978204,57978556,+,THE1A,LTR,ERVL-MaLR,1,351,-4,57978204,57978560 +1 + chr8 57982266 57982549 chr8,57982259,57982549,+,AluJb,SINE,Alu,1,302,-10,57982259,57982559 +2 + chr8 57983703 57984126 chr8,57983703,57984169,+,LTR2,LTR,ERV1,1,463,0,57983703,57984169 +5 + chr8 58098924 58098988 chr8,58096475,58098988,-,L1PA7,LINE,L1,-3952,2547,4,58092523,58098991 +4 - chr8 58100891 58101007 chr8,58100891,58101190,+,AluY,SINE,Alu,1,295,-16,58100891,58101206 -2 + chr8 58106206 58106294 chr8,58106074,58107069,+,Tigger6a,DNA,TcMar-Tigger,11,1079,-4,58106064,58107073 -1 + chr8 58259083 58259162 chr8,58259083,58259162,-,MLT1I,LTR,ERVL-MaLR,-39,372,293,58259044,58259454 +6 - chr8 58259208 58259276 chr8,58259208,58259466,-,MLT1I,LTR,ERVL-MaLR,-119,292,21,58259089,58259486 +2 - chr8 58271281 58271460 chr8,58270029,58271460,-,L1MEf,LINE,L1,-4713,1487,26,58265316,58271485 +4 - chr8 58272087 58272119 chr8,58272087,58272283,+,LTR81A,LTR,Gypsy,777,993,-357,58271311,58272640 -1 + chr8 59119193 59119280 chr8,59119193,59119280,+,(GCC)n,Simple_repeat,Simple_repeat,1,88,0,59119193,59119280 +1 + chr8 59119597 59119631 chr8,59119597,59119631,+,GA-rich,Low_complexity,Low_complexity,1,37,0,59119597,59119631 +6 + chr8 59121219 59121239 chr8,59121219,59121239,+,(AAT)n,Simple_repeat,Simple_repeat,1,20,0,59121219,59121239 +6 + chr8 59561327 59561338 chr8,59561146,59561338,+,L1M7,LINE,L1,1832,2017,-4294,59559315,59565632 -5 + chr8 59593578 59593701 chr8,59593458,59594182,+,MER44C,DNA,TcMar-Tigger,1,733,0,59593458,59594182 -1 + chr8 59606530 59607005 chr8,59605968,59607118,+,Tigger2,DNA,TcMar-Tigger,1,1178,-1540,59605968,59608658 +5 + chr8 59612819 59612879 chr8,59612758,59612879,+,L1M6,LINE,L1,1779,1899,-4597,59610980,59617476 +2 + chr8 59613447 59613472 chr8,59613447,59613472,+,(AGC)n,Simple_repeat,Simple_repeat,1,25,0,59613447,59613472 +6 + chr8 59613581 59613702 chr8,59613581,59613702,+,LTR88a,LTR,Gypsy?,697,816,0,59612885,59613702 +6 + chr8 60384588 60384665 chr8,60384583,60384748,-,HAL1,LINE,L1,-328,2137,1968,60384255,60386715 +5 - chr8 60385207 60385231 chr8,60385017,60385231,-,HAL1,LINE,L1,-749,1758,1544,60384268,60386774 +4 - chr8 60385231 60385406 chr8,60385231,60385423,+,AluJo,SINE,Alu,137,296,-16,60385095,60385439 -2 + chr8 60403212 60403489 chr8,60403192,60403489,-,AluJb,SINE,Alu,-11,301,1,60403181,60403489 +5 - chr8 60403585 60403743 chr8,60403585,60403743,+,MIRb,SINE,MIR,88,268,0,60403498,60403743 -6 + chr8 60404845 60404915 chr8,60404845,60404915,-,OldhAT1,DNA,hAT-Ac,-584,2264,2194,60404261,60407108 +6 - chr8 60408458 60408497 chr8,60408458,60408791,+,L1MC4,LINE,L1,7517,7861,-181,60400942,60408972 -2 + chr8 60468072 60468192 chr8,60467917,60468214,+,AluSc5,SINE,Alu,2,298,-11,60467916,60468225 -3 + chr8 60468863 60469116 chr8,60468687,60469314,-,MER77B,LTR,ERVL,-11,689,2,60468676,60469315 +5 - chr8 60508647 60508762 chr8,60508408,60508881,+,MLT1F,LTR,ERVL-MaLR,1,499,-49,60508408,60508930 -1 + chr8 60551957 60551977 chr8,60551856,60552001,-,AluJb,SINE,Alu,-5,307,138,60551851,60552138 +5 - chr8 60552369 60552435 chr8,60552300,60552435,-,AluJb,SINE,Alu,-176,136,3,60552124,60552437 +4 - chr8 60631509 60631577 chr8,60631356,60631577,+,(TTTC)n,Simple_repeat,Simple_repeat,1,233,0,60631356,60631577 -5 + chr8 60631580 60631857 chr8,60631580,60631857,-,AluJb,SINE,Alu,-25,287,7,60631555,60631863 +6 - chr8 60633062 60633287 chr8,60633062,60633287,-,LTR16E1,LTR,ERVL,-7,531,260,60633055,60633546 +6 - chr8 60633486 60633592 chr8,60633486,60633592,-,L1ME4a,LINE,L1,-95,6029,5910,60633391,60639501 +6 - chr8 60633667 60633854 chr8,60633667,60633854,+,MIR,SINE,MIR,52,256,-6,60633616,60633860 -6 + chr8 60633866 60633952 chr8,60633866,60633952,-,L1ME4a,LINE,L1,-296,5828,5741,60633570,60639692 +6 - chr8 60634030 60634146 chr8,60634030,60634146,+,FRAM,SINE,Alu,60,173,-3,60633971,60634149 -6 + chr8 60634147 60634379 chr8,60634147,60634379,-,L1ME4a,LINE,L1,-461,5663,5414,60633686,60639792 +6 - chr8 60634525 60634623 chr8,60634525,60634623,-,L1ME4a,LINE,L1,-1534,4612,4513,60632991,60639135 +6 - chr8 60634923 60635219 chr8,60634923,60635219,+,AluSc,SINE,Alu,1,295,-14,60634923,60635233 -6 + chr8 60635219 60635396 chr8,60635219,60635396,+,AluSx,SINE,Alu,134,312,0,60635086,60635396 -6 + chr8 60635534 60635606 chr8,60635534,60635606,+,(CATAT)n,Simple_repeat,Simple_repeat,1,74,0,60635534,60635606 -6 + chr8 60635970 60636199 chr8,60635970,60636199,+,MIR,SINE,MIR,22,257,-5,60635949,60636204 -6 + chr8 60636235 60636271 chr8,60636235,60636570,-,MLT1A,LTR,ERVL-MaLR,0,374,5,60636235,60636574 +1 - chr8 60653538 60653561 chr8,60653538,60653921,+,L2,LINE,L2,2702,3081,-338,60650837,60654259 -1 + chr8 60664387 60664502 chr8,60664387,60664502,+,AluJo,SINE,Alu,9,123,-189,60664379,60664691 +6 + chr8 60808833 60808926 chr8,60808833,60808976,+,MamRTE1,LINE,RTE-BovB,2825,2983,-829,60806009,60809805 -2 + chr8 60964730 60964823 chr8,60964534,60964845,-,AluY,SINE,Alu,-9,302,1,60964525,60964845 -3 - chr8 60965802 60966111 chr8,60965802,60966111,-,AluSq2,SINE,Alu,0,313,1,60965802,60966111 +5 - chr8 60966117 60966164 chr8,60966117,60966164,+,(TTCT)n,Simple_repeat,Simple_repeat,1,49,0,60966117,60966164 -6 + chr8 60966417 60966557 chr8,60966417,60966717,+,L1ME5,LINE,L1,5533,5841,-325,60960885,60967042 +5 + chr8 60966417 60966457 chr8,60966417,60966717,+,L1ME5,LINE,L1,5533,5841,-325,60960885,60967042 -5 + chr8 61264624 61264859 chr8,61264295,61265088,-,LTR39,LTR,ERV1,-2,781,7,61264293,61265094 +5 - chr8 61273921 61274014 chr8,61268015,61274014,-,L1PA2,LINE,L1,0,6155,127,61268015,61274140 +4 - chr8 61292005 61292039 chr8,61291952,61292106,-,MER5A1,DNA,hAT-Charlie,0,166,1,61291952,61292106 +1 - chr8 61300459 61300560 chr8,61300459,61300560,-,L3,LINE,CR1,-1,4098,3989,61300458,61304548 +5 - chr8 61300820 61301069 chr8,61300698,61301320,+,L2c,LINE,L2,2365,3055,-364,61298334,61301684 -1 + chr8 61759094 61759491 chr8,61759067,61759491,-,L1ME2z,LINE,L1,-723,5721,5302,61758344,61764792 +5 - chr8 61759745 61759978 chr8,61759745,61759978,-,LTR16E1,LTR,ERVL,-1,537,296,61759744,61760273 +6 - chr8 61761396 61761594 chr8,61761396,61761594,+,MIR,SINE,MIR,67,261,-1,61761330,61761595 -6 + chr8 61765946 61765969 chr8,61765946,61766112,-,MIR3,SINE,MIR,-28,180,16,61765918,61766127 +1 - chr8 61821481 61821843 chr8,61818365,61822084,-,ERVL-B4-int,LTR,ERVL,-256,5458,1620,61818109,61823703 +5 - chr8 61825148 61825252 chr8,61825148,61825291,+,MLT1E1,LTR,ERVL-MaLR,16,160,-388,61825133,61825679 -1 + chr8 61825360 61825532 chr8,61825360,61825600,+,MLT1E1,LTR,ERVL-MaLR,405,651,-3,61824956,61825603 +1 + chr8 61834873 61834996 chr8,61834871,61835049,+,MER57A-int,LTR,ERV1,1,177,-6010,61834871,61841059 +1 + chr8 61854383 61854434 chr8,61853848,61855067,+,L1MD1,LINE,L1,17,1303,-5330,61853832,61860397 +3 + chr8 61855664 61855693 chr8,61855406,61855693,-,AluJb,SINE,Alu,-25,287,1,61855381,61855693 -2 - chr8 61855693 61855852 chr8,61855693,61856725,+,L1MD1,LINE,L1,1310,2418,-4215,61854384,61860940 +5 + chr8 61861770 61862040 chr8,61861651,61862155,-,MER44C,DNA,TcMar-Tigger,-228,505,1,61861423,61862155 -5 - chr8 61885407 61885562 chr8,61885407,61887939,-,L1M3e,LINE,L1,-4354,2753,2,61881053,61887940 -5 - chr8 61889839 61889875 chr8,61889444,61889912,-,MLT1H,LTR,ERVL-MaLR,-2,547,1,61889442,61889912 -1 - chr8 61894117 61894206 chr8,61893841,61894256,+,MSTD,LTR,ERVL-MaLR,1,396,0,61893841,61894256 +5 + chr8 61894486 61894565 chr8,61894434,61894565,-,L2,LINE,L2,-654,2765,2630,61893780,61897194 -2 - chr8 61944139 61944180 chr8,61943912,61944277,+,MSTD,LTR,ERVL-MaLR,1,396,0,61943912,61944277 +5 + chr8 62473971 62474001 chr8,62473828,62474001,+,MER53,DNA,hAT,15,193,0,62473814,62474001 -4 + chr8 62977861 62979167 chr8,62975794,62979167,-,L1PA7,LINE,L1,-3103,3358,8,62972691,62979174 -1 - chr8 62979224 62979285 chr8,62979224,62979285,+,GA-rich,Low_complexity,Low_complexity,1,61,0,62979224,62979285 +6 + chr8 62979577 62979700 chr8,62979577,62979700,-,MIR1_Amn,SINE,MIR,-19,211,85,62979558,62979784 -6 - chr8 62981713 62981822 chr8,62981713,62981822,+,Tigger15a,DNA,TcMar-Tigger,35,148,-567,62981679,62982389 +5 + chr8 62981822 62981861 chr8,62981822,62981861,+,L1PA2,LINE,L1,6117,6155,0,62975706,62981861 +6 + chr8 62981864 62981983 chr8,62981864,62981983,+,Tigger15a,DNA,TcMar-Tigger,153,272,-443,62981712,62982426 +6 + chr8 62982198 62982266 chr8,62982198,62982266,-,MER91B,DNA,hAT-Tip100,-28,162,95,62982170,62982360 -6 - chr8 62982293 62982425 chr8,62982293,62982425,-,MER91B,DNA,hAT-Tip100,-69,121,1,62982224,62982425 -6 - chr8 62983168 62983290 chr8,62983168,62983290,-,L2b,LINE,L2,-2,3373,3244,62983166,62986533 -6 - chr8 62983450 62983519 chr8,62983450,62983519,-,L2c,LINE,L2,-7,3380,3315,62983443,62986833 -6 - chr8 63014348 63014648 chr8,63014348,63014648,+,AluSq2,SINE,Alu,1,300,-13,63014348,63014661 +6 + chr8 63024592 63024616 chr8,63024592,63024616,+,(ACAA)n,Simple_repeat,Simple_repeat,1,24,0,63024592,63024616 +6 + chr8 63024897 63024986 chr8,63024897,63024986,+,MIRc,SINE,MIR,154,249,-19,63024744,63025005 +6 + chr8 63025248 63025294 chr8,63025106,63025446,+,MER21C,LTR,ERVL,10,449,-489,63025097,63025935 +5 + chr8 63216076 63216098 chr8,63216076,63216098,+,(T)n,Simple_repeat,Simple_repeat,1,22,0,63216076,63216098 +6 + chr8 63216465 63216685 chr8,63216465,63216685,+,MIR,SINE,MIR,4,260,-2,63216462,63216687 +6 + chr8 63216873 63216923 chr8,63216873,63216923,+,A-rich,Low_complexity,Low_complexity,1,51,0,63216873,63216923 +6 + chr8 63217367 63217795 chr8,63217367,63217795,+,Tigger13a,DNA,TcMar-Tigger,169,687,-84,63217199,63217879 +6 + chr8 63410908 63410969 chr8,63410867,63411038,+,MIRb,SINE,MIR,51,245,-23,63410817,63411061 -3 + chr8 63413183 63413251 chr8,63413183,63413281,-,L1ME3B,LINE,L1,-38,6204,6103,63413145,63419383 +2 - chr8 63413633 63413717 chr8,63413280,63414796,-,L1MEg,LINE,L1,-1819,4327,2601,63411461,63417396 +5 - chr8 63465849 63465957 chr8,63465770,63465957,+,AluSg7,SINE,Alu,122,308,-1,63465649,63465958 +1 + chr8 63468204 63468276 chr8,63468204,63468276,+,(CCTC)n,Simple_repeat,Simple_repeat,1,72,0,63468204,63468276 +6 + chr8 63468467 63468504 chr8,63468467,63468504,+,A-rich,Low_complexity,Low_complexity,1,39,0,63468467,63468504 +6 + chr8 63468778 63468929 chr8,63468778,63468929,+,MER63B,DNA,hAT-Blackjack,277,432,-4,63468502,63468933 +6 + chr8 63469156 63469289 chr8,63469156,63469289,-,MIR3,SINE,MIR,-128,140,7,63469028,63469295 -6 - chr8 63470288 63470314 chr8,63470288,63470314,+,(AGC)n,Simple_repeat,Simple_repeat,1,26,0,63470288,63470314 +6 + chr8 63470399 63470487 chr8,63470399,63470487,+,(CCTTCCT)n,Simple_repeat,Simple_repeat,1,95,0,63470399,63470487 +6 + chr8 63475348 63475482 chr8,63475169,63475528,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,63475169,63475528 +5 + chr8 63587338 63587396 chr8,63587328,63587441,-,L1MA9,LINE,L1,0,6312,6192,63587328,63593632 -3 - chr8 63588823 63588850 chr8,63588620,63588850,-,L1MA9,LINE,L1,-904,5236,5003,63587716,63593852 -2 - chr8 63588850 63588895 chr8,63588850,63588895,+,MLT1B,LTR,ERVL-MaLR,384,428,0,63588467,63588895 +6 + chr8 63589009 63589408 chr8,63589009,63589475,-,L1M3c,LINE,L1,-1443,6116,5677,63587566,63595151 -5 - chr8 63687207 63687231 chr8,63687207,63687268,+,MIR3,SINE,MIR,111,169,-39,63687097,63687307 -2 + chr8 63728774 63729008 chr8,63728663,63729086,+,MLT2A1,LTR,ERVL,1,511,-44,63728663,63729130 -5 + chr8 63747720 63747755 chr8,63747720,63747843,+,L3,LINE,CR1,707,834,-3265,63747014,63751108 +4 + chr8 63778471 63778608 chr8,63778471,63778608,+,MER5A1,DNA,hAT-Charlie,1,131,-35,63778471,63778643 +6 + chr8 63778609 63778902 chr8,63778609,63778902,+,AluSz,SINE,Alu,1,286,-26,63778609,63778928 +6 + chr8 63779055 63779177 chr8,63779055,63779177,+,L2c,LINE,L2,3270,3384,-3,63775786,63779180 +6 + chr8 63779170 63779366 chr8,63779170,63779366,+,L2b,LINE,L2,2322,2546,-873,63776849,63780239 +6 + chr8 63779370 63779414 chr8,63779370,63779414,+,(TACA)n,Simple_repeat,Simple_repeat,1,46,0,63779370,63779414 +6 + chr8 63779581 63779619 chr8,63779581,63779619,+,(T)n,Simple_repeat,Simple_repeat,1,38,0,63779581,63779619 +6 + chr8 63780223 63780333 chr8,63780223,63780333,+,L2b,LINE,L2,3265,3378,-9,63776959,63780342 +6 + chr8 63784901 63785012 chr8,63784901,63785012,+,MIR3,SINE,MIR,55,175,-33,63784847,63785045 +6 + chr8 63785096 63785383 chr8,63785096,63785383,-,MamRep137,DNA,TcMar-Tigger,-60,450,175,63785036,63785557 -6 - chr8 63895498 63895549 chr8,63895367,63895553,-,LTR40a,LTR,ERVL,-179,340,123,63895188,63895675 +3 - chr8 64166975 64167027 chr8,64166931,64167147,+,MIRb,SINE,MIR,7,267,-1,64166925,64167148 -3 + chr8 64230573 64230619 chr8,64230573,64230716,-,Charlie23a,DNA,hAT-Charlie,-54,285,135,64230519,64230850 +2 - chr8 64240023 64240093 chr8,64240023,64240093,-,THE1C,LTR,ERVL-MaLR,0,381,312,64240023,64240404 +6 - chr8 64240097 64240282 chr8,64240097,64246124,+,L1PA3,LINE,L1,128,6155,0,64239970,64246124 -1 + chr8 64240440 64240506 chr8,64240097,64246124,+,L1PA3,LINE,L1,128,6155,0,64239970,64246124 -1 + chr8 64728876 64728991 chr8,64728876,64729166,+,AluJb,SINE,Alu,1,289,-23,64728876,64729189 -2 + chr8 64732839 64732944 chr8,64732659,64732967,+,THE1C,LTR,ERVL-MaLR,1,313,-62,64732659,64733029 -3 + chr8 64734344 64734459 chr8,64734267,64734643,-,MLT1A1,LTR,ERVL-MaLR,-3,405,1,64734264,64734643 +1 - chr8 64802368 64802485 chr8,64802305,64802518,+,AluSx4,SINE,Alu,90,306,-4,64802216,64802522 -3 + chr8 64804211 64804278 chr8,64804211,64804348,+,MIR,SINE,MIR,70,203,-59,64804142,64804407 -2 + chr8 64805589 64805700 chr8,64805441,64805829,-,LTR16A,LTR,ERVL,0,451,21,64805441,64805849 +1 - chr8 64817324 64817573 chr8,64817241,64817838,-,Charlie2b,DNA,hAT-Charlie,-2101,681,13,64815140,64817850 +1 - chr8 65527008 65527042 chr8,65526988,65527042,+,(GTTTT)n,Simple_repeat,Simple_repeat,1,57,0,65526988,65527042 -5 + chr8 65527042 65527324 chr8,65527042,65527324,-,AluSz,SINE,Alu,-27,285,1,65527015,65527324 +6 - chr8 65527476 65527585 chr8,65527476,65527702,+,MIRb,SINE,MIR,27,251,-17,65527450,65527719 -2 + chr8 65530576 65530609 chr8,65530335,65530630,+,AluJb,SINE,Alu,2,296,-16,65530334,65530646 -3 + chr8 65531708 65531915 chr8,65531708,65531915,-,L2,LINE,L2,-925,2494,2254,65530783,65534168 +6 - chr8 65532849 65533124 chr8,65532849,65533154,+,AluSx1,SINE,Alu,1,305,-7,65532849,65533161 -2 + chr8 65534818 65534864 chr8,65534818,65535040,-,L2c,LINE,L2,0,3387,3133,65534818,65538172 +2 - chr8 65714334 65714456 chr8,65714332,65714456,-,L2b,LINE,L2,0,3375,3247,65714332,65717702 +5 - chr8 65714536 65714672 chr8,65714536,65714672,+,Charlie23a,DNA,hAT-Charlie,114,250,-89,65714423,65714761 -6 + chr8 65842754 65842823 chr8,65842754,65842823,+,(AGAATG)n,Simple_repeat,Simple_repeat,1,76,0,65842754,65842823 +6 + chr8 66113366 66113459 chr8,66113366,66113459,+,tRNA-Tyr-TAC,tRNA,tRNA,1,73,-3,66113366,66113462 +6 + chr8 66192500 66192971 chr8,66192500,66193053,+,MLT2A2,LTR,ERVL,1,554,0,66192500,66193053 +1 + chr8 66193258 66193311 chr8,66193246,66193365,-,MIRb,SINE,MIR,-91,177,56,66193155,66193420 -5 - chr8 66194412 66194515 chr8,66194369,66194816,-,L2b,LINE,L2,-6,3381,2911,66194363,66197726 -3 - chr8 66196209 66196390 chr8,66196209,66196496,+,L2a,LINE,L2,3113,3426,0,66193097,66196496 +5 + chr8 66197139 66197193 chr8,66197139,66197193,+,(ACAC)n,Simple_repeat,Simple_repeat,1,56,0,66197139,66197193 +6 + chr8 66419589 66419741 chr8,66418576,66419741,+,L1MEd,LINE,L1,1570,2804,-3515,66417007,66423256 -5 + chr8 66419953 66420130 chr8,66419953,66420130,+,MIR,SINE,MIR,5,185,-77,66419949,66420207 -6 + chr8 66420185 66420293 chr8,66420185,66420293,+,L2c,LINE,L2,3039,3154,-233,66417147,66420526 -6 + chr8 66420339 66420514 chr8,66420339,66420514,-,Charlie4z,DNA,hAT-Charlie,0,167,1,66420339,66420514 +6 - chr8 66420591 66420749 chr8,66420591,66420749,-,MIR3,SINE,MIR,-24,184,19,66420567,66420767 +6 - chr8 66422806 66423432 chr8,66422806,66423432,+,MER39,LTR,ERV1,3,655,-52,66422804,66423484 -6 + chr8 66423432 66423733 chr8,66423432,66423733,-,AluSx1,SINE,Alu,-3,309,2,66423429,66423734 +6 - chr8 66423733 66423782 chr8,66423733,66423787,+,MER39,LTR,ERV1,656,707,0,66423078,66423787 -2 + chr8 66426042 66426142 chr8,66425845,66426142,-,AluJr,SINE,Alu,-13,299,1,66425832,66426142 +4 - chr8 67732587 67732665 chr8,67732474,67732704,-,L2c,LINE,L2,-50,3337,3099,67732424,67735802 -1 - chr8 68094989 68095081 chr8,68094689,68095381,-,MER21C,LTR,ERVL,-34,904,207,68094655,68095587 +1 - chr8 68303468 68303968 chr8,68302761,68303968,+,L1ME2z,LINE,L1,5882,7141,-163,68296880,68304131 -5 + chr8 68304130 68304585 chr8,68304130,68304585,+,L1MA8,LINE,L1,5472,5957,-334,68298659,68304919 -6 + chr8 68304585 68304801 chr8,68304585,68304824,+,AluJo,SINE,Alu,1,298,-14,68304585,68304838 -5 + chr8 68306518 68306561 chr8,68306205,68306561,-,LSU-rRNA_Hsa,rRNA,rRNA,-3316,1719,1365,68302889,68307925 +4 - chr8 68306559 68306598 chr8,68306559,68306687,+,LSU-rRNA_Hsa,rRNA,rRNA,1563,1691,-3344,68304997,68310031 -2 + chr8 68848822 68849098 chr8,68848822,68849132,+,AluY,SINE,Alu,1,308,-3,68848822,68849135 -2 + chr8 68852701 68852763 chr8,68852571,68853055,-,MER39,LTR,ERV1,-149,558,4,68852422,68853058 +1 - chr8 68911803 68911965 chr8,68911796,68911965,-,L1MA9,LINE,L1,0,6312,6131,68911796,68918095 +5 - chr8 68913292 68913332 chr8,68913292,68913332,+,(GAGTT)n,Simple_repeat,Simple_repeat,1,42,0,68913292,68913332 -6 + chr8 68959306 68959528 chr8,68959101,68959528,-,MLT1J,LTR,ERVL-MaLR,-94,418,3,68959007,68959530 +4 - chr8 69001384 69001512 chr8,69001297,69001689,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,69001295,69001689 +1 - chr8 69176650 69176672 chr8,69176474,69176672,+,MER58A,DNA,hAT-Charlie,1,211,-13,69176474,69176685 -4 + chr8 69176756 69176814 chr8,69176756,69176918,-,L2c,LINE,L2,-2891,528,358,69173865,69177275 +2 - chr8 69448185 69448244 chr8,69448185,69448365,-,UCON78,DNA,DNA,-66,377,205,69448119,69448569 +1 - chr8 69713431 69713471 chr8,69713431,69713471,+,(TCCC)n,Simple_repeat,Simple_repeat,1,41,0,69713431,69713471 +6 + chr8 69713491 69713529 chr8,69713491,69713529,+,(CA)n,Simple_repeat,Simple_repeat,1,39,0,69713491,69713529 +6 + chr8 69713532 69713593 chr8,69713532,69713593,-,MIRb,SINE,MIR,-26,242,182,69713506,69713774 -6 - chr8 69713612 69713753 chr8,69713612,69713753,+,MER104,DNA,TcMar-Tc2,49,181,0,69713564,69713753 +6 + chr8 69719677 69719722 chr8,69719455,69719984,+,HERV1_LTRd,LTR,ERV1,1,535,0,69719455,69719984 +5 + chr8 69834111 69834129 chr8,69834086,69834129,+,(CA)n,Simple_repeat,Simple_repeat,1,43,0,69834086,69834129 +1 + chr8 69837802 69837829 chr8,69837802,69837830,+,(AAAT)n,Simple_repeat,Simple_repeat,1,28,0,69837802,69837830 +5 + chr8 69843300 69843397 chr8,69843300,69849423,+,L1PA5,LINE,L1,2,6147,-7,69843299,69849430 +4 + chr8 69854809 69854971 chr8,69854809,69855190,+,MARNA,DNA,TcMar-Mariner,175,573,-13,69854635,69855203 +5 + chr8 69938168 69938178 chr8,69938036,69938178,-,L1ME4a,LINE,L1,-714,5410,5263,69937322,69943440 -1 - chr8 69938388 69938400 chr8,69938388,69938686,+,AluSx1,SINE,Alu,1,297,-15,69938388,69938701 +5 + chr8 70471134 70471194 chr8,70470986,70471194,+,LTR1A2,LTR,ERV1,1,227,-610,70470986,70471804 +1 + chr8 70471112 70471144 chr8,70470986,70471194,+,LTR1A2,LTR,ERV1,1,227,-610,70470986,70471804 -1 + chr8 70471194 70471458 chr8,70471194,70471458,+,AluSc,SINE,Alu,4,265,-44,70471191,70471502 +6 + chr8 70471458 70471469 chr8,70471458,70471469,+,LTR1A2,LTR,ERV1,228,228,-609,70471231,70472078 +6 + chr8 70471469 70471503 chr8,70471469,70471503,+,(AAC)n,Simple_repeat,Simple_repeat,1,35,0,70471469,70471503 +6 + chr8 70471503 70471845 chr8,70471503,70472152,+,LTR1A2,LTR,ERV1,228,837,0,70471276,70472152 +4 + chr8 70478140 70478163 chr8,70478140,70478179,-,MER5A,DNA,hAT-Charlie,0,189,158,70478140,70478336 -4 - chr8 70479921 70479934 chr8,70479624,70479934,-,AluSq2,SINE,Alu,-2,311,1,70479622,70479934 +4 - chr8 70479966 70480180 chr8,70479966,70480180,+,L2c,LINE,L2,3098,3326,-61,70476869,70480241 -6 + chr8 70480187 70480487 chr8,70480187,70480487,-,7SLRNA,srpRNA,srpRNA,-17,303,1,70480170,70480487 +6 - chr8 70481104 70481221 chr8,70481104,70481221,+,AluJo,SINE,Alu,2,118,-194,70481103,70481415 +6 + chr8 70481223 70481250 chr8,70481223,70481250,+,(AAAGA)n,Simple_repeat,Simple_repeat,1,27,0,70481223,70481250 +6 + chr8 70485445 70485502 chr8,70485445,70485502,+,L1ME4b,LINE,L1,800,865,-27,70484646,70485529 +6 + chr8 70613935 70614012 chr8,70613480,70614230,-,L2,LINE,L2,-1404,2015,1151,70612076,70615380 -1 - chr8 70615795 70615893 chr8,70615778,70615893,-,FLAM_C,SINE,Alu,-12,131,3,70615766,70615895 -2 - chr8 70615921 70615950 chr8,70615921,70615972,+,L3,LINE,CR1,3596,3641,-458,70612326,70616430 +4 + chr8 70631105 70631290 chr8,70630409,70632028,-,L1PA6,LINE,L1,-4559,1625,1,70625850,70632028 -3 - chr8 70646045 70646219 chr8,70645495,70646219,-,L1PA4,LINE,L1,0,6155,5430,70645495,70651648 -2 - chr8 70646219 70646487 chr8,70646219,70646487,+,L1PA4,LINE,L1,5158,5431,-724,70641062,70647211 +6 + chr8 70652638 70652752 chr8,70652638,70652806,+,L1ME3A,LINE,L1,6005,6173,0,70646634,70652806 +4 + chr8 70653695 70653981 chr8,70653638,70654033,+,MLT1J2,LTR,ERVL-MaLR,6,446,-2,70653633,70654035 +5 + chr8 70660145 70660252 chr8,70660117,70660252,-,FLAM_A,SINE,Alu,-7,135,1,70660110,70660252 -2 - chr8 70660568 70660788 chr8,70660568,70660788,+,L2a,LINE,L2,2987,3257,-169,70657582,70660957 +6 + chr8 70660788 70661079 chr8,70660788,70661079,-,AluJo,SINE,Alu,-12,300,1,70660776,70661079 -6 - chr8 70661079 70661226 chr8,70661079,70661226,+,L2a,LINE,L2,3258,3426,0,70657822,70661226 +6 + chr8 70661383 70661491 chr8,70661383,70661491,+,MIR,SINE,MIR,131,262,0,70661253,70661491 +6 + chr8 70662131 70662336 chr8,70662131,70662336,-,MIR,SINE,MIR,-10,252,15,70662121,70662350 -6 - chr8 70662692 70662988 chr8,70662692,70662988,-,AluJb,SINE,Alu,-17,295,2,70662675,70662989 -6 - chr8 71158939 71159007 chr8,71158938,71159020,-,MIR1_Amn,SINE,MIR,-83,147,59,71158855,71159078 -3 - chr8 71162378 71162572 chr8,71162378,71162696,+,MamGypsy2-I,LTR,Gypsy,553,874,-3292,71161826,71165988 +5 + chr8 71403440 71403812 chr8,71403383,71403812,+,L1ME3G,LINE,L1,253,703,-221,71403131,71404033 -5 + chr8 71404034 71404114 chr8,71404034,71404114,-,L2c,LINE,L2,-396,2991,2910,71403638,71407023 +6 - chr8 71404297 71404549 chr8,71404297,71404549,+,MER112,DNA,hAT-Charlie,2,258,-3,71404296,71404552 -6 + chr8 71404636 71404914 chr8,71404636,71404941,+,AluY,SINE,Alu,1,305,-6,71404636,71404947 -2 + chr8 71529462 71529510 chr8,71529462,71529510,+,MIR3,SINE,MIR,113,160,-48,71529350,71529558 -6 + chr8 71531201 71531261 chr8,71531201,71531433,-,MIRc,SINE,MIR,-15,253,1,71531186,71531433 +2 - chr8 71550040 71550277 chr8,71550040,71550277,-,UCON28c,Unknown,Unknown,-117,451,206,71549923,71550482 +6 - chr8 71568173 71568927 chr8,71568173,71569088,+,L2,LINE,L2,668,1657,-1762,71567506,71570850 -1 + chr8 71585119 71585200 chr8,71581618,71587762,+,L1PA5,LINE,L1,2,6154,0,71581617,71587762 -1 + chr8 71675300 71675387 chr8,71674936,71675387,+,LTR7,LTR,ERV1,1,448,-2,71674936,71675389 +1 + chr8 71675389 71675535 chr8,71675389,71678457,+,HERVH-int,LTR,ERV1,1,3290,-4423,71675389,71682880 +4 + chr8 71702250 71702631 chr8,71702250,71702631,+,L1ME3A,LINE,L1,5559,5931,-242,71696692,71702873 +5 + chr8 71702631 71702786 chr8,71702631,71702924,-,AluSx1,SINE,Alu,-20,292,1,71702611,71702924 -5 - chr8 71792788 71792868 chr8,71792788,71792868,+,(TTTTTC)n,Simple_repeat,Simple_repeat,1,76,0,71792788,71792868 -6 + chr8 71961987 71962113 chr8,71961987,71962157,+,MIR,SINE,MIR,20,246,-16,71961968,71962173 +4 + chr8 71965409 71965534 chr8,71965206,71965616,+,MSTA,LTR,ERVL-MaLR,1,428,0,71965206,71965616 +3 + chr8 71973538 71973612 chr8,71973533,71973612,-,L3,LINE,CR1,-1,4098,4022,71973532,71977633 -2 - chr8 72002222 72002286 chr8,72002190,72002286,-,AluSz6,SINE,Alu,-6,306,219,72002184,72002504 -2 - chr8 72029726 72029773 chr8,72029553,72029776,+,Tigger5,DNA,TcMar-Tigger,1,231,-2175,72029553,72031951 +1 + chr8 72052937 72052994 chr8,72052937,72052994,+,(GT)n,Simple_repeat,Simple_repeat,1,57,0,72052937,72052994 +6 + chr8 72052994 72053044 chr8,72052994,72053044,+,(GA)n,Simple_repeat,Simple_repeat,1,50,0,72052994,72053044 +6 + chr8 72053178 72053519 chr8,72053178,72053519,-,Charlie18a,DNA,hAT-Charlie,0,342,19,72053178,72053537 -5 - chr8 72056063 72056167 chr8,72056063,72056167,-,MER103C,DNA,hAT-Charlie,-123,174,69,72055940,72056235 -6 - chr8 72060372 72060433 chr8,72060372,72060433,-,MER5B,DNA,hAT-Charlie,-114,64,1,72060258,72060433 -6 - chr8 72106861 72106948 chr8,72106652,72107061,+,MLT1L,LTR,ERVL-MaLR,128,543,-67,72106525,72107128 +3 + chr8 72116718 72116760 chr8,72116129,72116828,-,L1MCa,LINE,L1,-1399,4922,4197,72114730,72121024 -3 - chr8 72118237 72118289 chr8,72117877,72118289,+,MER66A,LTR,ERV1,27,448,-30,72117851,72118319 +2 + chr8 72118324 72118393 chr8,72118324,72119396,+,MER66-int,LTR,ERV1,13,1076,-5600,72118312,72124996 +5 + chr8 72196436 72196585 chr8,72196436,72196585,+,LTR78,LTR,ERV1,294,445,-859,72196143,72197444 +6 + chr8 72201772 72201932 chr8,72200346,72201932,+,THE1D-int,LTR,ERVL-MaLR,3,1631,0,72200344,72201932 +2 + chr8 72201932 72202269 chr8,72201932,72202317,+,THE1D,LTR,ERVL-MaLR,1,380,-1,72201932,72202318 +5 + chr8 72749338 72749405 chr8,72749112,72749415,-,AluJo,SINE,Alu,-1,311,1,72749111,72749415 -3 - chr8 72750247 72750473 chr8,72749862,72750473,-,L1ME3F,LINE,L1,-44,6199,5530,72749818,72756002 -2 - chr8 72751288 72751499 chr8,72751288,72751499,-,MIRb,SINE,MIR,-43,225,2,72751245,72751500 -6 - chr8 72751791 72751840 chr8,72751791,72751840,+,(ACATGC)n,Simple_repeat,Simple_repeat,1,53,0,72751791,72751840 +6 + chr8 72881495 72881588 chr8,72875538,72881588,-,L1HS,LINE,L1,0,6155,127,72875538,72881714 +4 - chr8 72947187 72947320 chr8,72947187,72947320,-,AluJr,SINE,Alu,-179,133,1,72947008,72947320 -6 - chr8 72948052 72948112 chr8,72948052,72948112,+,(TTGG)n,Simple_repeat,Simple_repeat,1,63,0,72948052,72948112 +6 + chr8 72949243 72949287 chr8,72949243,72949287,+,(TGTATG)n,Simple_repeat,Simple_repeat,1,46,0,72949243,72949287 +6 + chr8 73052178 73052252 chr8,73052158,73052252,-,MIRc,SINE,MIR,-98,170,68,73052060,73052319 -1 - chr8 73052551 73052860 chr8,73052551,73052860,-,AluSz6,SINE,Alu,-2,310,1,73052549,73052860 -6 - chr8 73053182 73053370 chr8,73053182,73053370,-,AluJr,SINE,Alu,0,312,120,73053182,73053489 -6 - chr8 73053390 73053506 chr8,73053390,73053506,-,HAL1b,LINE,L1,-490,1931,1822,73052900,73055327 -6 - chr8 73053638 73053670 chr8,73053638,73053670,+,(GGTT)n,Simple_repeat,Simple_repeat,1,32,0,73053638,73053670 +6 + chr8 73053693 73053858 chr8,73053693,73053858,-,HAL1ME,LINE,L1,-355,2110,1929,73053338,73055786 -6 - chr8 73053994 73054230 chr8,73053994,73054230,-,HAL1,LINE,L1,-6,2501,2262,73053988,73056491 -6 - chr8 73054230 73054521 chr8,73054230,73054521,-,AluJb,SINE,Alu,-30,282,1,73054200,73054521 -6 - chr8 73054521 73055313 chr8,73054521,73055313,-,HAL1,LINE,L1,-246,2261,1384,73054275,73056696 -6 - chr8 73055317 73055498 chr8,73055317,73055498,-,AluJb,SINE,Alu,-3,309,129,73055314,73055626 -6 - chr8 73055509 73055603 chr8,73055509,73056094,+,L1PA6,LINE,L1,1,571,-5613,73055509,73061707 +4 + chr8 73062939 73063061 chr8,73062673,73063114,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,73062673,73063114 +5 + chr8 73085763 73085817 chr8,73085763,73085817,-,CR1_Mam,LINE,CR1,-487,1717,1663,73085276,73087479 +6 - chr8 73311142 73311310 chr8,73311142,73311310,-,MIRc,SINE,MIR,0,208,19,73311142,73311328 +6 - chr8 73321942 73321984 chr8,73321942,73321984,+,(TG)n,Simple_repeat,Simple_repeat,1,43,0,73321942,73321984 -6 + chr8 73356293 73356398 chr8,73356293,73356398,-,MIRb,SINE,MIR,-130,138,22,73356163,73356419 +1 - chr8 73358913 73359123 chr8,73358752,73359123,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,73358752,73359123 +1 + chr8 73368770 73369029 chr8,73368755,73369108,+,MLT1C,LTR,ERVL-MaLR,59,467,0,73368697,73369108 -5 + chr8 73439091 73439142 chr8,73439091,73439142,-,MER63A,DNA,hAT-Blackjack,0,210,162,73439091,73439303 -6 - chr8 73439181 73439237 chr8,73439181,73439244,-,MER63A,DNA,hAT-Blackjack,-138,72,8,73439043,73439251 -5 - chr8 73439790 73439918 chr8,73439709,73439918,-,MIR,SINE,MIR,-43,219,6,73439666,73439923 -2 - chr8 73440079 73441257 chr8,73440079,73441257,+,L2a,LINE,L2,2114,3304,-122,73437966,73441379 +6 + chr8 73441257 73441492 chr8,73441257,73441492,+,AluSx,SINE,Alu,1,235,-77,73441257,73441569 +6 + chr8 73441492 73441526 chr8,73441492,73441602,+,L2a,LINE,L2,3305,3424,-2,73438188,73441604 +5 + chr8 73675481 73675572 chr8,73675405,73676081,+,L1MC4,LINE,L1,7273,8032,-10,73668133,73676091 +3 + chr8 73727806 73728058 chr8,73727255,73729582,-,L1MB5,LINE,L1,-56,6118,3522,73727199,73733103 -1 - chr8 73732844 73732888 chr8,73732844,73732888,+,(AGCAAT)n,Simple_repeat,Simple_repeat,1,44,0,73732844,73732888 +6 + chr8 74099419 74099853 chr8,74099163,74099883,+,MER72,LTR,ERV1,1,722,0,74099163,74099883 +5 + chr8 74199396 74199513 chr8,74199086,74199513,+,L2a,LINE,L2,2953,3411,-15,74196134,74199528 +1 + chr8 74207721 74207919 chr8,74207502,74207919,+,MLT1J,LTR,ERVL-MaLR,5,470,-42,74207498,74207961 +2 + chr8 74208074 74208151 chr8,74208074,74208151,+,MIR,SINE,MIR,63,151,-111,74208012,74208262 +6 + chr8 74347809 74348205 chr8,74347809,74348259,-,MLT1J,LTR,ERVL-MaLR,-34,478,3,74347775,74348261 +2 - chr8 74349910 74349977 chr8,74349865,74349977,-,L1MC4,LINE,L1,-232,7810,7698,74349633,74357674 +4 - chr8 74599775 74599908 chr8,74594235,74600252,-,L1PA3,LINE,L1,-2,6153,126,74594233,74600377 -1 - chr8 74609698 74610040 chr8,74608398,74611425,+,L1MEc,LINE,L1,2747,5774,-578,74605652,74612003 -5 + chr8 74625249 74625341 chr8,74625066,74625363,-,AluJr,SINE,Alu,-20,292,1,74625046,74625363 -3 - chr8 74633235 74633314 chr8,74633008,74633314,-,AluJb,SINE,Alu,-1,311,14,74633007,74633327 +4 - chr8 74756607 74756679 chr8,74756495,74756679,-,MIRb,SINE,MIR,-64,204,22,74756431,74756700 -2 - chr8 74756734 74756876 chr8,74756734,74756876,+,L2b,LINE,L2,3219,3371,-4,74753516,74756880 +6 + chr8 74757489 74757667 chr8,74757489,74757667,-,MIRb,SINE,MIR,-36,232,51,74757453,74757717 -6 - chr8 74768036 74768250 chr8,74767785,74768250,-,L1MC3,LINE,L1,-22,7763,7335,74767763,74775584 -2 - chr8 74768250 74768483 chr8,74768250,74768825,-,MLT2B3,LTR,ERVL,-1,553,2,74768249,74768826 -5 - chr8 74798995 74799038 chr8,74798995,74799038,+,(TGT)n,Simple_repeat,Simple_repeat,1,43,0,74798995,74799038 -6 + chr8 74799038 74799319 chr8,74799038,74799320,-,AluSp,SINE,Alu,-29,284,2,74799009,74799321 +2 - chr8 74816051 74816092 chr8,74816038,74816092,+,(TTCT)n,Simple_repeat,Simple_repeat,1,56,0,74816038,74816092 -5 + chr8 74816641 74816744 chr8,74816641,74816744,+,L2,LINE,L2,2391,2503,-916,74814251,74817660 -6 + chr8 74817181 74817215 chr8,74817181,74817215,+,(TTA)n,Simple_repeat,Simple_repeat,1,35,0,74817181,74817215 -6 + chr8 74817343 74817578 chr8,74817343,74817578,+,MIR,SINE,MIR,18,268,0,74817326,74817578 -6 + chr8 74817925 74817987 chr8,74817925,74817987,-,L2c,LINE,L2,-8,3379,3316,74817917,74821302 +6 - chr8 74866519 74866634 chr8,74866519,74872545,+,L1PA2,LINE,L1,124,6151,-4,74866396,74872549 -1 + chr8 74866865 74866939 chr8,74866519,74872545,+,L1PA2,LINE,L1,124,6151,-4,74866396,74872549 -1 + chr8 74891151 74891240 chr8,74890836,74891240,-,L1ME4b,LINE,L1,-116,776,337,74890720,74891576 +5 - chr8 74895960 74896135 chr8,74895960,74896135,-,HAL1,LINE,L1,0,2507,2332,74895960,74898466 +6 - chr8 75176375 75176656 chr8,75176358,75176674,+,AluYi6,SINE,Alu,1,311,0,75176358,75176674 -1 + chr8 75223404 75223838 chr8,75223100,75223838,-,L1MEf,LINE,L1,-4724,1476,690,75218376,75224527 +5 - chr8 75224131 75224358 chr8,75224131,75224554,-,L3,LINE,CR1,-2949,1150,701,75221182,75225254 +2 - chr8 75276987 75277090 chr8,75274945,75278359,+,L1M1,LINE,L1,16,3439,-4126,75274930,75282485 -3 + chr8 75278367 75278497 chr8,75278367,75284402,+,L1PA4,LINE,L1,124,6152,-3,75278244,75284405 -1 + chr8 75324221 75324316 chr8,75324221,75330225,+,L1PA5,LINE,L1,127,6146,-8,75324095,75330233 -1 + chr8 75324565 75324741 chr8,75324221,75330225,+,L1PA5,LINE,L1,127,6146,-8,75324095,75330233 -1 + chr8 76403998 76404031 chr8,76403996,76404031,+,(CTCTCC)n,Simple_repeat,Simple_repeat,1,35,0,76403996,76404031 +1 + chr8 76404191 76404232 chr8,76404191,76404232,+,A-rich,Low_complexity,Low_complexity,1,41,0,76404191,76404232 +6 + chr8 76491200 76491231 chr8,76490741,76491281,+,Zaphod3,DNA,hAT-Tip100,4,566,-2057,76490738,76493338 -5 + chr8 76502816 76502846 chr8,76502816,76503428,-,MER90a,LTR,ERV1,-8,606,1,76502808,76503428 +2 - chr8 76510391 76510484 chr8,76510364,76510742,-,L1PA7,LINE,L1,0,6154,5776,76510364,76516517 -3 - chr8 76523195 76523292 chr8,76523076,76523292,-,MIR,SINE,MIR,0,262,2,76523076,76523293 -2 - chr8 76524107 76524140 chr8,76524107,76524140,+,(AAT)n,Simple_repeat,Simple_repeat,1,34,0,76524107,76524140 +6 + chr8 76524330 76524356 chr8,76524330,76524356,+,(A)n,Simple_repeat,Simple_repeat,1,26,0,76524330,76524356 +5 + chr8 76576551 76576585 chr8,76576244,76576585,-,MLT1K,LTR,ERVL-MaLR,-33,562,206,76576211,76576790 +5 - chr8 76576648 76576686 chr8,76576648,76577114,-,Charlie4a,DNA,hAT-Charlie,-5,503,21,76576643,76577134 +2 - chr8 76683252 76683278 chr8,76683252,76683300,+,(AC)n,Simple_repeat,Simple_repeat,1,49,0,76683252,76683300 -1 + chr8 76913305 76913381 chr8,76913305,76913381,+,L1MA6,LINE,L1,6225,6300,0,76907081,76913381 +6 + chr8 77450697 77450754 chr8,77450612,77450754,-,AluSx3,SINE,Alu,-1,310,179,77450611,77450932 -1 - chr8 77476284 77476381 chr8,77476119,77476519,+,MLT1B,LTR,ERVL-MaLR,1,390,0,77476119,77476519 +5 + chr8 77505782 77506009 chr8,77505568,77506082,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,77505568,77506082 +3 + chr8 77524465 77524501 chr8,77524304,77524501,-,L2a,LINE,L2,-10,3416,3215,77524294,77527715 -2 - chr8 78148101 78148246 chr8,78147693,78148246,+,LTR12,LTR,ERV1,1,590,-236,78147693,78148482 +1 + chr8 78148249 78148282 chr8,78148249,78151561,+,HERV9-int,LTR,ERV1,1,3822,-3269,78148249,78154830 +4 + chr8 78152439 78152453 chr8,78152439,78152547,+,UCON89,DNA,hAT?,117,242,0,78152323,78152547 +4 + chr8 78426103 78426126 chr8,78426098,78426126,+,A-rich,Low_complexity,Low_complexity,1,28,0,78426098,78426126 -5 + chr8 78480254 78480335 chr8,78480240,78480629,+,HERV16-int,LTR,ERVL,1721,2108,-2888,78478520,78483517 -3 + chr8 78534538 78534669 chr8,78534538,78534669,-,L2b,LINE,L2,-3,3372,3249,78534535,78537917 +6 - chr8 78535062 78535115 chr8,78535062,78535115,+,AmnSINE1,SINE,5S-Deu-L2,508,562,-13,78534555,78535128 -6 + chr8 78535417 78535540 chr8,78535417,78535540,-,MER5A,DNA,hAT-Charlie,-64,125,1,78535353,78535540 +6 - chr8 78535670 78535721 chr8,78535670,78535946,+,MER2,DNA,TcMar-Tigger,1,345,0,78535670,78535946 -2 + chr8 78535850 78535946 chr8,78535670,78535946,+,MER2,DNA,TcMar-Tigger,1,345,0,78535670,78535946 -4 + chr8 78558424 78558503 chr8,78558347,78558715,-,THE1A,LTR,ERVL-MaLR,0,355,1,78558347,78558715 +1 - chr8 78606778 78606816 chr8,78606778,78606816,+,(TATTCT)n,Simple_repeat,Simple_repeat,1,38,0,78606778,78606816 +6 + chr8 78607553 78608182 chr8,78607553,78608182,+,L2c,LINE,L2,2173,2853,-566,78605381,78608748 +6 + chr8 78608249 78608594 chr8,78608249,78608594,+,L2c,LINE,L2,3050,3424,-2,78605200,78608596 +6 + chr8 78608818 78608845 chr8,78608818,78608845,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,78608818,78608845 +6 + chr8 78837575 78837695 chr8,78837575,78837695,-,MIR,SINE,MIR,0,262,141,78837575,78837835 -6 - chr8 78837702 78838098 chr8,78837702,78838098,-,MLT1H,LTR,ERVL-MaLR,-17,472,82,78837685,78838179 -6 - chr8 78838147 78838301 chr8,78838147,78838301,-,MIR,SINE,MIR,-102,160,1,78838045,78838301 -6 - chr8 78839122 78839481 chr8,78839122,78839481,-,THE1B,LTR,ERVL-MaLR,0,364,1,78839122,78839481 -6 - chr8 78839544 78839624 chr8,78839544,78839624,+,(CCTT)n,Simple_repeat,Simple_repeat,1,84,0,78839544,78839624 +6 + chr8 78839699 78839976 chr8,78839699,78839976,+,MLT1I,LTR,ERVL-MaLR,128,398,-13,78839572,78839989 +6 + chr8 78840092 78840179 chr8,78840092,78840179,-,L1M,LINE,L1,-766,5358,5262,78839326,78845440 -6 - chr8 79297717 79297795 chr8,79297501,79297883,+,THE1C,LTR,ERVL-MaLR,2,373,-2,79297500,79297885 +1 + chr8 79307227 79307281 chr8,79307084,79307489,-,L1MA9,LINE,L1,-6667,363,19,79300417,79307507 -3 - chr8 79313973 79314134 chr8,79313940,79314134,-,LTR101_Mam,LTR,ERVL,-2,827,625,79313938,79314758 -2 - chr8 79314217 79314409 chr8,79314217,79314409,-,LTR101_Mam,LTR,ERVL,-364,465,262,79313853,79314670 -6 - chr8 79769372 79769667 chr8,79769371,79769667,-,AluSx,SINE,Alu,-20,292,1,79769351,79769667 +5 - chr8 79770443 79770573 chr8,79770443,79770573,+,FLAM_C,SINE,Alu,1,129,-14,79770443,79770587 -6 + chr8 79770583 79770852 chr8,79770583,79770852,+,AluJr4,SINE,Alu,2,290,-22,79770582,79770874 -6 + chr8 79770902 79771005 chr8,79770902,79771030,-,L2a,LINE,L2,-9,3417,3280,79770893,79774309 +2 - chr8 79780008 79780030 chr8,79779990,79780030,-,MER5A,DNA,hAT-Charlie,-3,186,147,79779987,79780176 -2 - chr8 79780030 79780082 chr8,79780030,79780082,-,MER5A,DNA,hAT-Charlie,-140,49,1,79779890,79780082 -6 - chr8 79802111 79802197 chr8,79801930,79802347,-,LTR88b,LTR,Gypsy?,-367,470,29,79801563,79802375 +3 - chr8 79821197 79821310 chr8,79821197,79821440,+,MIR,SINE,MIR,7,262,0,79821191,79821440 -2 + chr8 79956478 79956841 chr8,79956478,79956841,-,L1PA14,LINE,L1,-2,6159,5796,79956476,79962636 +6 - chr8 79957332 79957381 chr8,79957332,79957406,+,L2c,LINE,L2,3256,3332,-55,79954077,79957461 -1 + chr8 80032796 80033300 chr8,80032796,80034022,-,LTR2752,LTR,ERV1,0,1263,1,80032796,80034022 +1 - chr8 80274105 80274219 chr8,80273918,80274219,-,AluJo,SINE,Alu,-10,302,1,80273908,80274219 -2 - chr8 80274219 80274243 chr8,80274219,80274377,-,MIRb,SINE,MIR,-78,190,25,80274141,80274401 -4 - chr8 80339801 80339840 chr8,80339732,80340176,+,LTR16A2,LTR,ERVL,8,478,-17,80339725,80340193 +5 + chr8 80484583 80484683 chr8,80484583,80484683,-,HY1,scRNA,scRNA,-1,118,1,80484582,80484683 +6 - chr8 80485462 80485619 chr8,80485462,80485637,-,Eulor6D,DNA?,DNA?,-10,292,104,80485452,80485740 +1 - chr8 80535044 80535353 chr8,80535044,80535353,-,AluSp,SINE,Alu,-10,303,1,80535034,80535353 +6 - chr8 80535897 80536194 chr8,80535897,80536194,-,AluSg,SINE,Alu,-11,299,1,80535886,80536194 +6 - chr8 80536257 80536442 chr8,80536257,80536442,-,AluJo,SINE,Alu,-20,292,104,80536237,80536545 +6 - chr8 80536455 80536758 chr8,80536455,80536758,-,AluJb,SINE,Alu,-9,303,1,80536446,80536758 +6 - chr8 80537406 80537457 chr8,80537406,80537457,+,L1ME4c,LINE,L1,300,350,-480,80537107,80537937 -6 + chr8 80537458 80537473 chr8,80537458,80537473,-,SVA_A,Retroposon,SVA,-1181,206,198,80536277,80537670 +6 - chr8 80537473 80537599 chr8,80537473,80537599,+,FLAM_A,SINE,Alu,2,127,-15,80537472,80537614 -6 + chr8 80537911 80538207 chr8,80537911,80538207,+,AluSz,SINE,Alu,1,295,-17,80537911,80538224 -6 + chr8 80538213 80538340 chr8,80538213,80538340,-,L1ME4a,LINE,L1,-49,6075,5956,80538164,80544295 +6 - chr8 80538403 80538577 chr8,80538403,80538718,-,AluSx1,SINE,Alu,0,312,1,80538403,80538718 +2 - chr8 80538942 80539135 chr8,80538855,80539153,+,AluSx3,SINE,Alu,2,299,-12,80538854,80539165 -1 + chr8 80542296 80542447 chr8,80542296,80542447,+,L1ME4a,LINE,L1,5956,6117,-7,80536341,80542454 +6 + chr8 80542956 80543085 chr8,80542956,80543085,+,L1ME3A,LINE,L1,6039,6166,-7,80536918,80543092 +6 + chr8 81039379 81039546 chr8,81039184,81039616,+,MLT1C,LTR,ERVL-MaLR,1,460,-7,81039184,81039623 +3 + chr8 81058523 81058591 chr8,81058472,81058591,+,AluJo,SINE,Alu,145,277,-35,81058328,81058626 +1 + chr8 81058614 81058683 chr8,81058614,81058907,+,AluJr,SINE,Alu,1,293,-19,81058614,81058926 +4 + chr8 81157773 81157803 chr8,81157773,81158083,+,L2c,LINE,L2,2037,2407,-1012,81155737,81159095 +4 + chr8 81158582 81158620 chr8,81158256,81158620,+,MLT1L,LTR,ERVL-MaLR,10,363,-247,81158247,81158867 +2 + chr8 81158854 81159083 chr8,81158854,81159096,+,L2c,LINE,L2,2661,2918,-501,81156194,81159597 +5 + chr8 81164284 81164557 chr8,81164248,81164557,-,AluSp,SINE,Alu,0,313,2,81164248,81164558 -2 - chr8 81275689 81275873 chr8,81275689,81275873,+,LTR90B,LTR,LTR,26,206,-590,81275664,81276463 -6 + chr8 81276511 81276672 chr8,81276511,81276672,+,MamRep1879,DNA,hAT-Tip100?,4,149,-67,81276508,81276739 -6 + chr8 81439436 81439542 chr8,81437506,81439542,-,L1PB1,LINE,L1,-3938,2925,834,81433568,81440375 -1 - chr8 81439546 81439630 chr8,81439546,81439714,-,L1PB1,LINE,L1,-6663,200,17,81432883,81439730 -4 - chr8 81439991 81440093 chr8,81439806,81440175,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,81439806,81440175 +3 + chr8 81497917 81498028 chr8,81497838,81498028,+,ERV3-16A3_I-int,LTR,ERVL,2146,2334,-2892,81495693,81500920 +2 + chr8 81525843 81525964 chr8,81525796,81526038,-,MIRc,SINE,MIR,0,268,9,81525796,81526046 -3 - chr8 81526405 81526525 chr8,81526405,81526561,+,MIRb,SINE,MIR,47,210,-58,81526359,81526619 +5 + chr8 81533082 81533275 chr8,81533082,81534670,-,ERV3-16A3_I-int,LTR,ERVL,-1151,4075,2459,81531931,81537128 -5 - chr8 81696677 81697066 chr8,81696677,81697066,+,HSMAR2,DNA,TcMar-Mariner,3,405,-897,81696675,81697963 +6 + chr8 81697081 81697432 chr8,81697081,81697432,+,MSTA,LTR,ERVL-MaLR,1,394,-34,81697081,81697466 +6 + chr8 81697432 81697727 chr8,81697432,81697727,-,AluSq2,SINE,Alu,-21,292,1,81697411,81697727 -6 - chr8 81697727 81697768 chr8,81697727,81697768,+,MSTA,LTR,ERVL-MaLR,395,428,0,81697333,81697768 +6 + chr8 81697768 81697897 chr8,81697768,81697897,+,HSMAR2,DNA,TcMar-Mariner,459,587,-715,81697310,81698612 +6 + chr8 81697940 81698223 chr8,81697940,81698223,+,HSMAR2,DNA,TcMar-Mariner,591,869,-433,81697350,81698656 +6 + chr8 81698223 81698356 chr8,81698223,81698356,+,FLAM_C,SINE,Alu,2,135,-8,81698222,81698364 +6 + chr8 81698356 81698694 chr8,81698356,81698755,+,HSMAR2,DNA,TcMar-Mariner,870,1262,-40,81697487,81698795 +5 + chr8 81791823 81791920 chr8,81791620,81791920,-,AluY,SINE,Alu,-12,299,1,81791608,81791920 -1 - chr8 81885377 81885440 chr8,81885301,81885595,-,AluSz,SINE,Alu,-16,296,3,81885285,81885597 -1 - chr8 81922993 81923193 chr8,81922993,81923225,-,HAL1ME,LINE,L1,-588,1919,1651,81922405,81924875 -5 - chr8 82098451 82098472 chr8,82098067,82098472,-,MER57C2,LTR,ERV1,-2,432,1,82098065,82098472 +5 - chr8 82108577 82108713 chr8,82108577,82109004,-,MLT2B1,LTR,ERVL,-62,458,1,82108515,82109004 +2 - chr8 82160417 82160577 chr8,82160239,82160973,+,LTR27D,LTR,ERV1,1,614,-1,82160239,82160974 -1 + chr8 82523302 82523366 chr8,82523302,82523646,+,MER2,DNA,TcMar-Tigger,2,339,-6,82523301,82523652 -5 + chr8 82536236 82536407 chr8,82534515,82536827,-,L1PA7,LINE,L1,-4182,2317,9,82530333,82536835 +1 - chr8 82588165 82588243 chr8,82587834,82589040,+,L1MC2,LINE,L1,5112,6344,0,82582723,82589040 -3 + chr8 82677118 82677136 chr8,82677097,82677136,-,L1P4,LINE,L1,-457,5706,5668,82676640,82682803 +4 - chr8 82862779 82863110 chr8,82862564,82863349,+,MER54B,LTR,ERVL,4,793,0,82862561,82863349 -5 + chr8 82865467 82865573 chr8,82865068,82865573,-,MLT1D,LTR,ERVL-MaLR,0,505,1,82865068,82865573 +4 - chr8 82881815 82881878 chr8,82880506,82881878,+,LTR12C,LTR,ERV1,2,1579,0,82880505,82881878 -4 + chr8 82912939 82912955 chr8,82912643,82912955,+,ERVL-E-int,LTR,ERVL,119,437,-5230,82912525,82918185 +2 + chr8 82913000 82913023 chr8,82913000,82913055,+,LTR33C,LTR,ERVL,10,62,-567,82912991,82913622 +4 + chr8 82916807 82916879 chr8,82916222,82917118,+,L1MC,LINE,L1,3443,4325,-1821,82912780,82918939 -3 + chr8 82958640 82958696 chr8,82958513,82959216,+,HAL1,LINE,L1,1539,2278,-229,82956975,82959445 -1 + chr8 82961196 82961297 chr8,82960959,82961297,-,MER92A,LTR,ERV1,0,636,31,82960959,82961327 -2 - chr8 83403758 83404051 chr8,83402757,83404051,+,LTR12C,LTR,ERV1,3,1579,0,83402755,83404051 +1 + chr8 83404051 83404069 chr8,83404051,83404212,+,LTR37-int,LTR,ERV1,113,294,-3766,83403939,83407978 +4 + chr8 83407692 83407719 chr8,83407040,83407719,+,MER92-int,LTR,ERV1,2493,3148,-2070,83404548,83409789 +2 + chr8 83407719 83407839 chr8,83407719,83407839,+,AluSx3,SINE,Alu,186,303,-8,83407534,83407847 +6 + chr8 83407839 83408515 chr8,83407839,83408515,+,MER92-int,LTR,ERV1,3545,4199,-1019,83404295,83409534 +6 + chr8 83408568 83408895 chr8,83408568,83408895,+,LTR37A,LTR,ERV1,18,365,-61,83408551,83408956 +6 + chr8 83912713 83912831 chr8,83912425,83912831,+,LTR14B,LTR,ERVK,1,608,0,83912425,83912831 +1 + chr8 84044544 84044604 chr8,84044119,84045276,+,Tigger3b,DNA,TcMar-Tigger,11,1222,-9,84044109,84045285 +3 + chr8 84139923 84140199 chr8,84139896,84140199,-,AluSg,SINE,Alu,-7,303,1,84139889,84140199 -2 - chr8 84140199 84140283 chr8,84140199,84140344,+,L1ME3E,LINE,L1,5958,6135,-107,84134242,84140451 +5 + chr8 85175982 85176288 chr8,85175982,85176288,-,AluSz,SINE,Alu,-14,298,1,85175968,85176288 +6 - chr8 85177040 85177062 chr8,85177040,85177070,+,(CCT)n,Simple_repeat,Simple_repeat,1,30,0,85177040,85177070 -1 + chr8 85177522 85177553 chr8,85177478,85177553,+,(GCC)n,Simple_repeat,Simple_repeat,1,76,0,85177478,85177553 -5 + chr8 85222475 85222645 chr8,85222475,85222645,+,MIR,SINE,MIR,6,174,-88,85222470,85222733 -6 + chr8 85222732 85222853 chr8,85222732,85223071,+,MLT1K,LTR,ERVL-MaLR,262,589,-6,85222471,85223077 -2 + chr8 85226509 85226639 chr8,85226289,85226822,-,L1MC4,LINE,L1,-196,7846,7321,85226093,85234142 +3 - chr8 85243345 85243410 chr8,85243141,85243410,-,L1MC4a,LINE,L1,-1830,6052,5785,85241311,85249194 +4 - chr8 85243412 85243688 chr8,85243412,85243698,+,AluSq2,SINE,Alu,2,290,-23,85243411,85243721 -2 + chr8 85462736 85462801 chr8,85462729,85462970,+,ORSL,DNA,hAT-Tip100,9,268,-7,85462721,85462977 -3 + chr8 85462932 85462970 chr8,85462729,85462970,+,ORSL,DNA,hAT-Tip100,9,268,-7,85462721,85462977 -4 + chr8 85524589 85524720 chr8,85524589,85524720,+,MLT1L,LTR,ERVL-MaLR,300,438,-172,85524290,85524892 +6 + chr8 85540394 85540511 chr8,85540394,85540603,+,MIRb,SINE,MIR,40,268,0,85540355,85540603 +5 + chr8 85839705 85839785 chr8,85839524,85839864,+,THE1B,LTR,ERVL-MaLR,1,364,0,85839524,85839864 +1 + chr8 85951072 85951083 chr8,85951072,85951098,+,(AAAG)n,Simple_repeat,Simple_repeat,1,26,0,85951072,85951098 +5 + chr8 86153434 86153613 chr8,86153348,86153657,-,AluJb,SINE,Alu,-10,302,2,86153338,86153658 +5 - chr8 86154023 86154073 chr8,86153753,86154073,-,AluSg7,SINE,Alu,0,309,1,86153753,86154073 +4 - chr8 86333274 86333411 chr8,86333055,86333411,+,L1MEf,LINE,L1,3956,4320,-1826,86329100,86335237 -5 + chr8 86333471 86334199 chr8,86333471,86334743,-,HSMAR2,DNA,TcMar-Mariner,-4,1298,1,86333467,86334743 +2 - chr8 86335703 86335749 chr8,86335260,86335749,-,MLT1F,LTR,ERVL-MaLR,-15,533,1,86335245,86335749 +4 - chr8 86335750 86335761 chr8,86335750,86336413,+,L1ME1,LINE,L1,5203,5943,-236,86330548,86336649 -2 + chr8 86337933 86338032 chr8,86337815,86338032,-,MER20,DNA,hAT-Charlie,-4,215,3,86337811,86338034 +5 - chr8 86338040 86338387 chr8,86338040,86338528,-,MLT1F1,LTR,ERVL-MaLR,0,569,55,86338040,86338582 +2 - chr8 86707547 86707994 chr8,86707156,86708428,-,L2a,LINE,L2,-3,3423,2092,86707153,86710519 -1 - chr8 86760836 86760960 chr8,86760644,86761127,+,MLT1F,LTR,ERVL-MaLR,1,548,0,86760644,86761127 +3 + chr8 86764793 86764875 chr8,86764756,86764875,-,MIR,SINE,MIR,-94,168,6,86764662,86764880 -2 - chr8 86765935 86765945 chr8,86765211,86765945,+,LTR8B,LTR,ERV1,1,820,0,86765211,86765945 +1 + chr8 86765945 86766097 chr8,86765945,86766133,+,MER5A,DNA,hAT-Charlie,1,189,0,86765945,86766133 +4 + chr8 86783873 86783980 chr8,86783595,86784030,-,MLT1C,LTR,ERVL-MaLR,-4,463,5,86783591,86784034 -3 - chr8 86818443 86818508 chr8,86818405,86818508,+,L2c,LINE,L2,3243,3350,-37,86815163,86818545 +2 + chr8 87542192 87542222 chr8,87542192,87542222,+,(TTTGT)n,Simple_repeat,Simple_repeat,1,30,0,87542192,87542222 -6 + chr8 87542233 87542489 chr8,87542233,87543316,-,MER52A,LTR,ERV1,-510,1245,1,87541723,87543316 +2 - chr8 87566179 87566202 chr8,87566179,87566202,+,(TTCT)n,Simple_repeat,Simple_repeat,1,23,0,87566179,87566202 -6 + chr8 87566202 87566510 chr8,87566202,87566510,-,AluY,SINE,Alu,-1,310,2,87566201,87566511 +5 - chr8 87566822 87566966 chr8,87566822,87566966,-,LTR78B,LTR,ERV1,-1151,145,1,87565671,87566966 +6 - chr8 87636601 87636650 chr8,87636246,87636722,+,LTR10F,LTR,ERV1,1,511,0,87636246,87636722 -3 + chr8 87705709 87705741 chr8,87705606,87707182,-,THE1C-int,LTR,ERVL-MaLR,0,1631,3,87705606,87707184 +3 - chr8 87733775 87733843 chr8,87733579,87734393,+,L1MC3,LINE,L1,6872,7769,-16,87726708,87734409 -1 + chr8 87751207 87751254 chr8,87750745,87751254,+,MER72,LTR,ERV1,1,515,-207,87750745,87751461 -4 + chr8 87751254 87751317 chr8,87751254,87752302,-,MER11A,LTR,ERVK,0,1266,1,87751254,87752302 +2 - chr8 87755652 87755718 chr8,87755567,87755932,-,THE1B,LTR,ERVL-MaLR,0,364,1,87755567,87755932 +1 - chr8 88003727 88003803 chr8,88003704,88003846,+,L2a,LINE,L2,3283,3426,0,88000422,88003846 +3 + chr8 88010517 88010536 chr8,88010358,88010536,-,L1MC4a,LINE,L1,-5,8037,7867,88010353,88018402 -2 - chr8 88010536 88010703 chr8,88010536,88011125,-,LTR27,LTR,ERV1,0,636,3,88010536,88011127 -4 - chr8 88012084 88012201 chr8,88012050,88012360,-,AluSx4,SINE,Alu,-4,306,1,88012046,88012360 -3 - chr8 88019056 88019113 chr8,88019020,88019159,-,ERVL-E-int,LTR,ERVL,-1973,3694,3546,88017047,88022704 -5 - chr8 88327844 88327859 chr8,88327821,88327859,+,(CGCA)n,Simple_repeat,Simple_repeat,1,38,0,88327821,88327859 +1 + chr8 88329331 88329467 chr8,88329331,88329563,-,MIRc,SINE,MIR,0,268,3,88329331,88329565 -5 - chr8 88700291 88700349 chr8,88700088,88700409,+,THE1C,LTR,ERVL-MaLR,1,316,-59,88700088,88700468 +1 + chr8 88709330 88709515 chr8,88708956,88709515,+,LTR35B,LTR,ERV1,1,592,-13,88708956,88709528 +2 + chr8 88709529 88709727 chr8,88709529,88710606,+,MER34-int,LTR,ERV1,3632,4725,-3482,88705898,88714088 +5 + chr8 88735725 88735987 chr8,88735708,88735987,-,AluYc,SINE,Alu,-17,282,1,88735691,88735987 -2 - chr8 88736109 88736135 chr8,88736109,88736135,+,(AAAC)n,Simple_repeat,Simple_repeat,1,26,0,88736109,88736135 +6 + chr8 88737059 88737134 chr8,88737059,88737668,-,L1ME3D,LINE,L1,-306,5936,5323,88736753,88742990 -5 - chr8 88808821 88808893 chr8,88808821,88808893,+,L2a,LINE,L2,3355,3426,0,88805467,88808893 -6 + chr8 89611361 89611527 chr8,89611361,89611527,+,MIR,SINE,MIR,3,193,-69,89611359,89611596 -6 + chr8 89615252 89615305 chr8,89615252,89615379,+,MLT1N2,LTR,ERVL-MaLR,430,562,0,89614823,89615379 -2 + chr8 89616929 89617044 chr8,89616898,89617044,+,L3b,LINE,CR1,4963,5109,-123,89611936,89617167 -5 + chr8 89620683 89620875 chr8,89620601,89621036,+,Tigger10,DNA,TcMar-Tigger,121,604,-1240,89620481,89622276 -1 + chr8 89623085 89623204 chr8,89623003,89623413,-,MSTA,LTR,ERVL-MaLR,0,428,1,89623003,89623413 +1 - chr8 89629154 89629271 chr8,89628996,89629293,+,AluSx1,SINE,Alu,1,299,-13,89628996,89629306 -3 + chr8 89717519 89717728 chr8,89717519,89717728,-,MLT1H,LTR,ERVL-MaLR,-124,287,98,89717395,89717825 +6 - chr8 89717771 89718317 chr8,89717771,89718317,+,L2a,LINE,L2,2720,3319,-107,89715052,89718424 -6 + chr8 89718731 89718764 chr8,89718731,89718764,+,(TTGC)n,Simple_repeat,Simple_repeat,1,34,0,89718731,89718764 -6 + chr8 89719098 89719315 chr8,89719098,89719315,+,LTR104_Mam,LTR,Gypsy,991,1207,-302,89718108,89719617 -6 + chr8 89720220 89720266 chr8,89720220,89720266,+,(TA)n,Simple_repeat,Simple_repeat,1,49,0,89720220,89720266 -6 + chr8 89720299 89720352 chr8,89720299,89720352,+,(TCTATG)n,Simple_repeat,Simple_repeat,1,56,0,89720299,89720352 -6 + chr8 89724629 89724966 chr8,89724444,89724974,-,MLT1D,LTR,ERVL-MaLR,-1,504,1,89724443,89724974 +1 - chr8 89756235 89756273 chr8,89755838,89756273,+,LTR7C,LTR,ERV1,1,467,-4,89755838,89756277 -5 + chr8 89756330 89756610 chr8,89756330,89756631,+,AluSg,SINE,Alu,1,296,-14,89756330,89756645 -2 + chr8 90221488 90221562 chr8,90221369,90221562,-,LTR16C,LTR,ERVL,-12,477,276,90221357,90221837 -1 - chr8 90221580 90221746 chr8,90221580,90221792,-,LTR16C,LTR,ERVL,-269,220,1,90221311,90221792 -4 - chr8 90387567 90387845 chr8,90387539,90387845,-,AluJr,SINE,Alu,-10,302,1,90387529,90387845 -2 - chr8 90388127 90388145 chr8,90388127,90388875,-,L1ME3Cz,LINE,L1,-8,989,203,90388119,90389077 -5 - chr8 90454409 90454429 chr8,90454232,90454429,-,MER3,DNA,hAT-Charlie,-6,203,7,90454226,90454435 -2 - chr8 90534611 90534626 chr8,90534476,90534893,-,MER74A,LTR,ERVL,-33,525,4,90534443,90534896 +5 - chr8 90554351 90554666 chr8,90554307,90554686,-,MLT1J2,LTR,ERVL-MaLR,-17,431,34,90554290,90554719 +3 - chr8 90562229 90562340 chr8,90562072,90562361,+,AluSz,SINE,Alu,2,300,-12,90562071,90562373 -3 + chr8 90569135 90569318 chr8,90569000,90569487,+,MER34,LTR,ERV1,1,542,0,90569000,90569487 +5 + chr8 90605768 90606065 chr8,90605768,90606660,-,LTR12D,LTR,ERV1,-134,554,1,90605634,90606660 +1 - chr8 90620041 90620070 chr8,90620041,90620176,-,L1M5,LINE,L1,-350,5829,5695,90619691,90625870 +1 - chr8 90646834 90646883 chr8,90646834,90647083,+,L2c,LINE,L2,2174,2448,-971,90644661,90648054 +4 + chr8 90648594 90648789 chr8,90648594,90648789,+,MLT1I,LTR,ERVL-MaLR,198,402,-9,90648397,90648798 +1 + chr8 90649079 90649177 chr8,90649079,90649177,-,MLT1M,LTR,ERVL-MaLR,-434,238,143,90648645,90649319 -6 - chr8 90649254 90649908 chr8,90649254,90649908,+,L2a,LINE,L2,2747,3425,-1,90646508,90649909 +6 + chr8 90649931 90650175 chr8,90649931,90650175,+,LTR33,LTR,ERVL,1,240,-275,90649931,90650450 +6 + chr8 90650373 90650434 chr8,90650373,90650434,-,MIRb,SINE,MIR,-150,118,56,90650223,90650489 -6 - chr8 90806596 90806729 chr8,90806596,90806861,+,MIRb,SINE,MIR,1,268,0,90806596,90806861 -2 + chr8 90812908 90813160 chr8,90812908,90813202,+,AluYk2,SINE,Alu,1,296,-15,90812908,90813217 -2 + chr8 90859059 90859240 chr8,90858809,90859267,-,LOR1-int,LTR,ERV1,-7670,450,2,90851139,90859268 +1 - chr8 91016588 91016738 chr8,91016332,91016793,+,HAL1,LINE,L1,1340,1848,-659,91014993,91017452 +1 + chr8 91043578 91043610 chr8,91043578,91043610,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,91043578,91043610 -6 + chr8 91044621 91044762 chr8,91044504,91045505,-,MLT1H-int,LTR,ERVL-MaLR,0,1409,338,91044504,91045842 +1 - chr8 91059909 91060332 chr8,91059877,91060332,-,MER4C,LTR,ERV1,-1,464,4,91059876,91060335 +5 - chr8 91060573 91060642 chr8,91060573,91060642,+,(CCTT)n,Simple_repeat,Simple_repeat,1,73,0,91060573,91060642 -6 + chr8 91061117 91061477 chr8,91061117,91061477,+,L2a,LINE,L2,3050,3417,-9,91058068,91061486 -6 + chr8 91061871 91062320 chr8,91061871,91062320,-,Charlie8,DNA,hAT-Charlie,-1885,543,71,91059986,91062390 +6 - chr8 91062685 91062768 chr8,91062685,91062768,-,MIRb,SINE,MIR,-23,245,162,91062662,91062929 +6 - chr8 91063144 91063325 chr8,91063144,91063325,-,MER5B,DNA,hAT-Charlie,-1,177,8,91063143,91063332 +6 - chr8 91063400 91063529 chr8,91063400,91063529,+,Charlie15a,DNA,hAT-Charlie,83,219,-5,91063318,91063534 -6 + chr8 91063610 91063741 chr8,91063610,91063741,-,LTR67B,LTR,ERVL,-238,382,222,91063372,91063962 +6 - chr8 91068064 91068165 chr8,91068064,91068165,+,(TATATAT)n,Simple_repeat,Simple_repeat,1,107,0,91068064,91068165 -6 + chr8 91068863 91069609 chr8,91068863,91069609,-,L1M6,LINE,L1,-4516,1980,1206,91064347,91070814 +6 - chr8 91564980 91565084 chr8,91564830,91565084,-,UCON1,Unknown,Unknown,-306,1080,815,91564524,91565898 +5 - chr8 91773070 91773093 chr8,91772848,91773093,-,L2c,LINE,L2,0,3375,3145,91772848,91776237 +4 - chr8 91773095 91773199 chr8,91773095,91773413,+,AluYc3,SINE,Alu,1,295,-5,91773095,91773418 -2 + chr8 91861475 91861579 chr8,91861213,91861672,-,LTR16E2,LTR,ERVL,0,568,2,91861213,91861673 +3 - chr8 91907274 91907430 chr8,91907266,91907430,-,MIRc,SINE,MIR,-59,209,38,91907207,91907467 +4 - chr8 91907579 91907619 chr8,91907579,91908042,+,MLT1K,LTR,ERVL-MaLR,89,533,-62,91907491,91908104 -1 + chr8 91977222 91977305 chr8,91977222,91977305,+,L1MD3,LINE,L1,7902,7990,-5,91969321,91977310 +6 + chr8 92413556 92413645 chr8,92413556,92413834,-,MLT1H,LTR,ERVL-MaLR,-267,312,1,92413289,92413834 +1 - chr8 92420935 92421061 chr8,92420935,92421102,+,MIRc,SINE,MIR,58,225,-43,92420878,92421145 -2 + chr8 92509683 92509816 chr8,92509683,92509919,-,UCON26,Unknown,Unknown,-41,302,56,92509642,92509974 +1 - chr8 92653942 92654116 chr8,92653828,92654116,-,MLT1L,LTR,ERVL-MaLR,0,610,231,92653828,92654346 +4 - chr8 92677589 92677683 chr8,92677529,92677815,-,MLT1J,LTR,ERVL-MaLR,-155,357,63,92677374,92677877 -5 - chr8 92678809 92679021 chr8,92678607,92679021,+,MLT2D,LTR,ERVL,3,408,-6,92678605,92679027 +2 + chr8 92679138 92679172 chr8,92679138,92679172,+,(TTATATG)n,Simple_repeat,Simple_repeat,1,36,0,92679138,92679172 +6 + chr8 92712962 92713005 chr8,92712895,92713005,-,L2b,LINE,L2,-875,2544,2431,92712020,92715435 +5 - chr8 92712985 92713038 chr8,92712985,92713038,-,Penelope1_Vert,LINE,Penelope,-963,124,74,92712022,92713111 +6 - chr8 92713330 92713441 chr8,92713330,92713441,-,MIRb,SINE,MIR,-137,131,19,92713193,92713459 +6 - chr8 92715717 92715850 chr8,92715717,92715850,-,LTR85b,LTR,Gypsy?,-150,634,501,92715567,92716350 +6 - chr8 92715851 92715887 chr8,92715851,92715887,+,(AG)n,Simple_repeat,Simple_repeat,1,36,0,92715851,92715887 -6 + chr8 92723051 92723169 chr8,92723051,92723169,-,L2b,LINE,L2,0,3375,3260,92723051,92726428 +6 - chr8 92765702 92765943 chr8,92765116,92769888,-,HERVL-int,LTR,ERVL,-273,5381,563,92764843,92770450 -1 - chr8 92765443 92765578 chr8,92765116,92769888,-,HERVL-int,LTR,ERVL,-273,5381,563,92764843,92770450 +1 - chr8 92875239 92875501 chr8,92875239,92875501,+,L1MC4,LINE,L1,4102,4365,-1843,92871138,92877344 -6 + chr8 92875561 92875752 chr8,92875561,92875752,-,L2a,LINE,L2,-124,3302,3107,92875437,92878858 +6 - chr8 92875756 92876569 chr8,92875756,92876569,+,L1ME3D,LINE,L1,4076,4925,-1221,92871681,92877790 -6 + chr8 92876575 92876703 chr8,92876575,92876703,-,L2a,LINE,L2,-157,3269,3141,92876418,92879843 +6 - chr8 92876717 92877277 chr8,92876717,92877277,+,L1ME3D,LINE,L1,4938,5527,-716,92871780,92877993 -6 + chr8 92877248 92877358 chr8,92877248,92877358,+,L1ME3D,LINE,L1,6126,6236,-6,92871123,92877364 -6 + chr8 92877465 92877791 chr8,92877465,92877791,-,THE1C,LTR,ERVL-MaLR,0,375,24,92877465,92877814 +1 - chr8 92878229 92878453 chr8,92878229,92878453,+,MER20,DNA,hAT-Charlie,1,219,0,92878229,92878453 -6 + chr8 92878475 92878643 chr8,92878475,92878643,-,L2b,LINE,L2,-2,3424,3221,92878473,92881863 +6 - chr8 92878728 92878851 chr8,92878728,92878851,+,L2a,LINE,L2,3318,3426,0,92875411,92878851 -6 + chr8 92878992 92879041 chr8,92878992,92879041,+,A-rich,Low_complexity,Low_complexity,1,52,0,92878992,92879041 -6 + chr8 92879329 92879437 chr8,92879329,92879437,-,L1M5,LINE,L1,-520,5604,5490,92878809,92884926 +6 - chr8 92921416 92921466 chr8,92921340,92921639,+,MLT1J1,LTR,ERVL-MaLR,7,327,-117,92921334,92921756 +3 + chr8 92927940 92928031 chr8,92927073,92928181,-,L2,LINE,L2,-2047,1372,268,92925026,92928448 -3 - chr8 92941112 92941292 chr8,92941057,92941376,-,AluSx1,SINE,Alu,-3,309,1,92941054,92941376 -5 - chr8 93134744 93134811 chr8,93134704,93135281,-,L2a,LINE,L2,0,3426,2772,93134704,93138052 +1 - chr8 93215925 93216091 chr8,93215868,93216091,-,L2,LINE,L2,-617,2802,2592,93215251,93218682 +5 - chr8 93250654 93250723 chr8,93250484,93251131,+,MER115,DNA,hAT-Tip100,12,689,-4,93250473,93251135 -1 + chr8 93346684 93346860 chr8,93346684,93346860,+,LFSINE_Vert,SINE,tRNA,158,341,-118,93346527,93346978 -6 + chr8 93390537 93390665 chr8,93390509,93390703,-,MamRep38,DNA,hAT,-84,211,5,93390425,93390707 +3 - chr8 93391071 93391223 chr8,93390870,93391421,-,MLT1F2,LTR,ERVL-MaLR,-12,548,6,93390858,93391426 +3 - chr8 93531218 93531305 chr8,93531003,93531996,+,L4_C_Mam,LINE,RTE-X,3018,4096,-1042,93527986,93533038 -3 + chr8 93682543 93682658 chr8,93682391,93682680,+,AluJb,SINE,Alu,1,297,-15,93682391,93682695 -3 + chr8 93683354 93683431 chr8,93683124,93683512,+,MSTD,LTR,ERVL-MaLR,1,396,0,93683124,93683512 -3 + chr8 93699936 93700058 chr8,93699924,93700058,+,L2b,LINE,L2,3242,3374,-1,93696683,93700059 -4 + chr8 93715449 93715518 chr8,93715449,93715518,-,HAL1b,LINE,L1,-109,2312,2235,93715340,93717752 +6 - chr8 93715529 93715651 chr8,93715529,93715651,-,MIR,SINE,MIR,0,262,141,93715529,93715791 +6 - chr8 93715742 93716022 chr8,93715742,93716022,-,L1M5,LINE,L1,-302,5822,5526,93715440,93721547 +6 - chr8 93716039 93716113 chr8,93716039,93716343,-,AluSx,SINE,Alu,-8,304,1,93716031,93716343 +1 - chr8 93719574 93719600 chr8,93719421,93719600,-,MIRb,SINE,MIR,-20,248,63,93719401,93719662 -1 - chr8 93719964 93720113 chr8,93719964,93720281,-,AluSx1,SINE,Alu,-1,311,1,93719963,93720281 -4 - chr8 93720769 93720879 chr8,93720588,93720879,+,AluSx,SINE,Alu,1,293,-19,93720588,93720898 +2 + chr8 93720920 93721153 chr8,93720920,93721153,-,MIR,SINE,MIR,-3,259,16,93720917,93721168 -6 - chr8 93741390 93741459 chr8,93741390,93741691,+,AluSq,SINE,Alu,1,300,-13,93741390,93741704 +4 + chr8 93744272 93744534 chr8,93744183,93744681,+,LTR72B,LTR,ERV1,5,500,0,93744179,93744681 +5 + chr8 93834454 93834811 chr8,93834224,93835276,-,SVA_A,Retroposon,SVA,0,693,1,93834224,93835276 +5 - chr8 93916051 93916119 chr8,93916051,93916119,-,MIRc,SINE,MIR,-139,69,7,93915912,93916125 +6 - chr8 94097764 94097803 chr8,94097355,94097803,+,MLT1J,LTR,ERVL-MaLR,29,512,0,94097327,94097803 -5 + chr8 94100600 94100633 chr8,94100543,94100633,-,MIR,SINE,MIR,-1,261,168,94100542,94100800 +4 - chr8 94100635 94100699 chr8,94100635,94100829,+,MIR,SINE,MIR,58,256,-6,94100578,94100835 -2 + chr8 94104269 94104322 chr8,94104206,94104679,-,MLT2B1,LTR,ERVL,-40,480,5,94104166,94104683 +1 - chr8 94428355 94428540 chr8,94428355,94428540,-,MER2,DNA,TcMar-Tigger,-1,344,159,94428354,94428698 +6 - chr8 94428540 94428591 chr8,94428540,94428591,-,MER66C,LTR,ERV1,-2,553,501,94428538,94429091 +6 - chr8 94428652 94428732 chr8,94428652,94428732,-,MER2,DNA,TcMar-Tigger,-262,83,1,94428390,94428732 +6 - chr8 94429123 94429366 chr8,94429123,94429366,+,MamRep137,DNA,TcMar-Tigger,236,489,-21,94428888,94429387 -6 + chr8 94429396 94429470 chr8,94429396,94429470,+,MER103C,DNA,hAT-Charlie,222,297,0,94429175,94429470 -6 + chr8 94533628 94533664 chr8,94533448,94533740,-,AluJo,SINE,Alu,-19,293,1,94533429,94533740 -1 - chr8 94533938 94534026 chr8,94533742,94534026,-,AluSz,SINE,Alu,-16,296,1,94533726,94534026 -2 - chr8 94568950 94569047 chr8,94568950,94569047,-,MER103C,DNA,hAT-Charlie,-35,262,169,94568915,94569215 -6 - chr8 94569257 94569440 chr8,94569257,94569440,-,AluJr4,SINE,Alu,-1,311,135,94569256,94569574 -6 - chr8 94569440 94569474 chr8,94569440,94569474,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,94569440,94569474 +6 + chr8 94569474 94569591 chr8,94569474,94569591,-,AluJr4,SINE,Alu,-195,117,2,94569279,94569592 -6 - chr8 94569622 94569745 chr8,94569622,94569914,+,AluYe5,SINE,Alu,1,309,-1,94569622,94569915 +5 + chr8 94637289 94637736 chr8,94637289,94637736,-,L1MC4,LINE,L1,0,8042,7512,94637289,94645247 +6 - chr8 94638132 94638221 chr8,94638132,94638221,-,L2a,LINE,L2,-3,3423,3335,94638129,94641555 +6 - chr8 94638268 94638554 chr8,94638268,94638554,-,AluSg,SINE,Alu,-21,289,1,94638247,94638554 +6 - chr8 94638622 94638745 chr8,94638622,94638745,-,MER85,DNA,PiggyBac,-2,137,4,94638620,94638748 +6 - chr8 94792234 94792357 chr8,94792234,94792546,-,AluSq2,SINE,Alu,-16,297,2,94792218,94792547 +2 - chr8 94792731 94792869 chr8,94792574,94792869,+,AluYf1,SINE,Alu,1,296,-15,94792574,94792884 -4 + chr8 94950149 94950305 chr8,94950149,94950305,+,MIRc,SINE,MIR,64,224,-44,94950086,94950349 +1 + chr8 94951050 94951396 chr8,94950942,94951438,+,MLT1G1,LTR,ERVL-MaLR,5,579,0,94950938,94951438 +5 + chr8 95067335 95067465 chr8,95067335,95067465,+,MIR,SINE,MIR,4,129,-133,95067332,95067598 -6 + chr8 95067541 95068326 chr8,95067541,95068326,-,L1MDa,LINE,L1,-5686,947,23,95061855,95068348 +6 - chr8 95068407 95068477 chr8,95068407,95068477,+,L2a,LINE,L2,3352,3426,0,95065056,95068477 -6 + chr8 95068475 95068597 chr8,95068475,95068597,-,MIR,SINE,MIR,-115,147,19,95068360,95068615 +6 - chr8 95069141 95069235 chr8,95069141,95069294,-,L2a,LINE,L2,0,3426,3250,95069141,95072543 +2 - chr8 95078521 95078644 chr8,95078361,95078663,+,AluJo,SINE,Alu,1,296,-16,95078361,95078679 -3 + chr8 95085563 95085666 chr8,95085541,95085683,+,FAM,SINE,Alu,1,173,-12,95085541,95085695 -3 + chr8 95204456 95204831 chr8,95204271,95204831,+,LTR18B,LTR,ERVL,1,614,0,95204271,95204831 +1 + chr8 95205260 95205312 chr8,95205250,95205347,+,L2c,LINE,L2,3293,3386,-1,95201958,95205348 +3 + chr8 95207007 95207040 chr8,95206610,95207040,+,MLT1L,LTR,ERVL-MaLR,17,475,-135,95206594,95207175 -5 + chr8 95207060 95207251 chr8,95207060,95207251,+,MLT1D,LTR,ERVL-MaLR,199,393,-112,95206862,95207363 -6 + chr8 95506485 95506507 chr8,95506485,95507006,+,MamGypLTR1b,LTR,Gypsy,192,738,-44,95506294,95507050 +4 + chr8 95526140 95526326 chr8,95526140,95526326,+,L1M5,LINE,L1,5569,5762,-362,95520572,95526688 +6 + chr8 95526767 95527199 chr8,95526767,95527199,+,L1MEd,LINE,L1,20,471,-6632,95526748,95533831 +6 + chr8 95527226 95527524 chr8,95527226,95527524,+,AluSx1,SINE,Alu,1,301,-11,95527226,95527535 +5 + chr8 95798395 95798413 chr8,95795606,95799304,-,L1P1,LINE,L1,-372,5783,2067,95795234,95801370 -1 - chr8 95810019 95810136 chr8,95809709,95810175,+,LTR16B1,LTR,ERVL,1,480,0,95809709,95810175 +5 + chr8 95986108 95986198 chr8,95986105,95986198,-,MER74A,LTR,ERVL,0,622,478,95986105,95986675 +5 - chr8 95986495 95986828 chr8,95986495,95986828,-,MLT1A0,LTR,ERVL-MaLR,0,365,34,95986495,95986861 +6 - chr8 95986828 95986939 chr8,95986828,95986947,+,FLAM_A,SINE,Alu,4,122,-20,95986825,95986967 -2 + chr8 95993002 95993103 chr8,95993002,95993288,+,AluYc3,SINE,Alu,1,288,-12,95993002,95993300 -1 + chr8 96140572 96140636 chr8,96140484,96140636,+,MamRep1151,LTR?,LTR?,561,709,0,96139924,96140636 -5 + chr8 96237907 96238034 chr8,96237734,96238090,+,MLT1I,LTR,ERVL-MaLR,3,409,-2,96237732,96238092 +5 + chr8 96385973 96386050 chr8,96385904,96386125,+,MLT1A,LTR,ERVL-MaLR,175,374,0,96385730,96386125 -3 + chr8 97133164 97133250 chr8,97133164,97133250,+,(AT)n,Simple_repeat,Simple_repeat,1,87,0,97133164,97133250 -6 + chr8 97144170 97144486 chr8,97143938,97144486,+,L1MCc,LINE,L1,1574,2603,-4565,97142365,97149051 +1 + chr8 97144495 97144604 chr8,97144495,97144604,+,L1MEd,LINE,L1,22,135,-6968,97144474,97151572 +6 + chr8 97241742 97241948 chr8,97241613,97241948,+,L4_C_Mam,LINE,RTE-X,3957,4273,-865,97237657,97242813 -5 + chr8 97242022 97242117 chr8,97242022,97242117,+,MLT1J,LTR,ERVL-MaLR,1,80,-432,97242022,97242549 -6 + chr8 97242118 97242204 chr8,97242118,97242286,+,MER53,DNA,hAT,1,185,-8,97242118,97242294 -1 + chr8 98043133 98043327 chr8,98043133,98043425,-,AluSz,SINE,Alu,-20,292,1,98043113,98043425 -4 - chr8 98043831 98044121 chr8,98043831,98044130,+,AluSq2,SINE,Alu,2,303,-10,98043830,98044140 +5 + chr8 98371355 98371475 chr8,98371296,98371475,-,MIRb,SINE,MIR,-36,232,60,98371260,98371534 +5 - chr8 98388192 98388247 chr8,98387763,98388814,+,L1MC5a,LINE,L1,1370,2260,-517,98386394,98389331 -1 + chr8 98391401 98391514 chr8,98390092,98391793,-,L1MEf,LINE,L1,-4544,1656,4,98385548,98391796 +1 - chr8 98436669 98436792 chr8,98436668,98436792,-,MER5A,DNA,hAT-Charlie,-13,176,44,98436655,98436835 -1 - chr8 98438191 98438222 chr8,98438191,98438222,+,(TG)n,Simple_repeat,Simple_repeat,1,31,0,98438191,98438222 +6 + chr8 98438646 98438908 chr8,98438646,98438908,+,(TG)n,Simple_repeat,Simple_repeat,1,264,0,98438646,98438908 +6 + chr8 98438973 98439253 chr8,98438973,98439253,+,L2a,LINE,L2,3113,3425,-1,98435861,98439254 +6 + chr8 98603253 98603366 chr8,98603234,98603536,-,AluSx1,SINE,Alu,-12,300,1,98603222,98603536 -1 - chr8 98961428 98961484 chr8,98961375,98961486,-,L3,LINE,CR1,-239,3860,3759,98961136,98965244 -1 - chr8 98967922 98968197 chr8,98967900,98968197,-,AluSc,SINE,Alu,-12,297,1,98967888,98968197 -2 - chr8 98996763 98996966 chr8,98996630,98997062,-,Charlie1b,DNA,hAT-Charlie,0,523,36,98996630,98997097 +5 - chr8 99012973 99013006 chr8,99012973,99013006,+,(GCCGCA)n,Simple_repeat,Simple_repeat,1,33,0,99012973,99013006 -6 + chr8 99119352 99119468 chr8,99119223,99119553,-,AluJr,SINE,Alu,0,312,5,99119223,99119557 -1 - chr8 99120104 99120192 chr8,99119871,99120192,-,AluSx,SINE,Alu,-2,310,1,99119869,99120192 -2 - chr8 99120204 99120351 chr8,99120204,99120351,-,AluSx,SINE,Alu,-167,145,1,99120037,99120351 -6 - chr8 99796615 99797054 chr8,99796582,99797054,-,MLT1H,LTR,ERVL-MaLR,-13,536,1,99796569,99797054 +5 - chr8 100350283 100350528 chr8,100350014,100350528,+,MLT2B2,LTR,ERVL,1,515,0,100350014,100350528 +2 + chr8 100350532 100350598 chr8,100350532,100350598,-,MIR3,SINE,MIR,-61,147,83,100350471,100350680 -6 - chr8 100350626 100350707 chr8,100350626,100350712,-,L2c,LINE,L2,-41,3385,3294,100350585,100354005 -5 - chr8 100381483 100381771 chr8,100381483,100381836,+,MLT1J1,LTR,ERVL-MaLR,1,419,-29,100381483,100381865 -2 + chr8 100414424 100414459 chr8,100414424,100414474,+,LTR16A1,LTR,ERVL,1,53,-403,100414424,100414877 -1 + chr8 100429178 100429302 chr8,100429178,100429302,-,L2b,LINE,L2,-299,3076,2940,100428879,100432241 +6 - chr8 100483090 100483153 chr8,100483090,100483220,+,MER5A,DNA,hAT-Charlie,54,187,-2,100483037,100483222 +5 + chr8 100483104 100483153 chr8,100483104,100483230,-,MER5A,DNA,hAT-Charlie,-56,133,7,100483048,100483236 -5 - chr8 100492528 100492629 chr8,100492425,100492629,-,MIRb,SINE,MIR,-73,195,4,100492352,100492632 -1 - chr8 100493629 100493713 chr8,100493509,100493742,-,MIRb,SINE,MIR,-17,251,24,100493492,100493765 -5 - chr8 100500965 100501005 chr8,100500960,100501005,+,A-rich,Low_complexity,Low_complexity,1,47,0,100500960,100501005 +2 + chr8 100618581 100618764 chr8,100618426,100619138,-,MER21B,LTR,ERVL,-108,760,99,100618318,100619236 -1 - chr8 100619075 100619138 chr8,100618426,100619138,-,MER21B,LTR,ERVL,-108,760,99,100618318,100619236 -1 - chr8 100619813 100619884 chr8,100619723,100619884,+,MER105,DNA,hAT-Charlie,1,165,-38,100619723,100619922 +2 + chr8 101052686 101052796 chr8,101052686,101052796,-,MER91A,DNA,hAT-Tip100,-84,112,1,101052602,101052796 -6 - chr8 101054498 101054545 chr8,101054467,101054545,+,L2c,LINE,L2,3250,3329,-58,101051218,101054603 +2 + chr8 101054561 101054579 chr8,101054561,101054652,-,MamGypLTR2b,LTR,Gypsy,-26,896,807,101054535,101055458 -4 - chr8 101075188 101075380 chr8,101075188,101075380,+,MIRb,SINE,MIR,22,237,-31,101075167,101075411 +6 + chr8 101076002 101076163 chr8,101076002,101076163,-,L2a,LINE,L2,-221,3166,3001,101075781,101079163 -6 - chr8 101076190 101076218 chr8,101076190,101076218,-,MIRb,SINE,MIR,0,268,246,101076190,101076463 -6 - chr8 101076218 101076251 chr8,101076218,101076736,+,MLT1F2,LTR,ERVL-MaLR,1,560,0,101076218,101076736 +5 + chr8 101125077 101125131 chr8,101125077,101125131,+,MIRc,SINE,MIR,117,163,-105,101124961,101125236 -6 + chr8 101125977 101126051 chr8,101125942,101126051,+,MER5A,DNA,hAT-Charlie,50,160,-29,101125893,101126080 -4 + chr8 101128987 101129100 chr8,101128883,101129100,+,L2b,LINE,L2,3174,3375,0,101125710,101129100 +1 + chr8 101129106 101129222 chr8,101129106,101129222,+,MIR3,SINE,MIR,81,199,-9,101129026,101129231 +6 + chr8 101133032 101133233 chr8,101132972,101133233,-,MLT1K,LTR,ERVL-MaLR,-134,461,189,101132838,101133421 -2 - chr8 101139665 101139733 chr8,101139497,101139733,-,MIR,SINE,MIR,0,262,33,101139497,101139765 -1 - chr8 101139865 101139979 chr8,101139846,101139979,-,AluJr,SINE,Alu,-179,133,2,101139667,101139980 -2 - chr8 101140660 101140929 chr8,101140395,101141058,+,MER20B,DNA,hAT-Charlie,36,741,-42,101140360,101141100 +5 + chr8 101167472 101167585 chr8,101167472,101167585,-,L3,LINE,CR1,-113,3986,3854,101167359,101171438 +6 - chr8 101167654 101167846 chr8,101167654,101167846,+,MLT1J,LTR,ERVL-MaLR,1,202,-310,101167654,101168156 -6 + chr8 101167846 101168150 chr8,101167846,101168150,-,AluJr,SINE,Alu,-11,301,1,101167835,101168150 +6 - chr8 101168150 101168286 chr8,101168150,101168286,+,MLT1J,LTR,ERVL-MaLR,203,341,-171,101167948,101168457 -6 + chr8 101168348 101168662 chr8,101168348,101168662,+,L2a,LINE,L2,3037,3425,-1,101165312,101168663 -6 + chr8 101168691 101169157 chr8,101168691,101169157,+,L3,LINE,CR1,3024,3516,-583,101165668,101169740 -6 + chr8 101169155 101169256 chr8,101169155,101169256,-,L2c,LINE,L2,0,3387,3287,101169155,101172542 +6 - chr8 101169493 101169511 chr8,101169493,101169511,+,(A)n,Simple_repeat,Simple_repeat,1,18,0,101169493,101169511 -6 + chr8 101261863 101262102 chr8,101261863,101262102,+,MamRep564,Unknown,Unknown,106,334,-23,101261758,101262125 -6 + chr8 101262237 101262382 chr8,101262237,101262400,+,AluSp,SINE,Alu,137,298,-15,101262101,101262415 -2 + chr8 101262767 101262833 chr8,101262561,101262833,-,AluSg,SINE,Alu,-37,273,1,101262524,101262833 +4 - chr8 101262833 101262903 chr8,101262833,101263182,-,MLT1K,LTR,ERVL-MaLR,-175,420,1,101262658,101263182 +1 - chr8 101293602 101293783 chr8,101293602,101293889,+,AluJr,SINE,Alu,2,288,-24,101293601,101293913 +5 + chr8 101387299 101387549 chr8,101387255,101387666,-,LTR16B,LTR,ERVL,0,463,1,101387255,101387666 +5 - chr8 101393103 101393165 chr8,101393103,101393165,+,MIR3,SINE,MIR,88,159,-49,101393016,101393214 -6 + chr8 101393166 101393186 chr8,101393166,101393477,-,MER58B,DNA,hAT-Charlie,0,341,26,101393166,101393502 +1 - chr8 102239558 102239616 chr8,102239558,102239616,+,(CCTCC)n,Simple_repeat,Simple_repeat,1,58,0,102239558,102239616 +6 + chr8 102243609 102243693 chr8,102243437,102243693,-,LTR102_Mam,LTR,ERVL,-573,278,1,102242864,102243693 -1 - chr8 102243828 102243966 chr8,102243828,102243966,+,MLT1G3,LTR,ERVL-MaLR,1,136,-459,102243828,102244425 +6 + chr8 102243966 102244121 chr8,102243966,102244276,-,AluSc8,SINE,Alu,0,311,2,102243966,102244277 -4 - chr8 102251802 102251958 chr8,102251802,102251958,+,MER5A,DNA,hAT-Charlie,38,189,0,102251765,102251958 +6 + chr8 102528740 102528802 chr8,102528541,102528802,+,(GTGCTGT)n,Simple_repeat,Simple_repeat,1,268,0,102528541,102528802 +1 + chr8 102529311 102529381 chr8,102529281,102529381,+,LTR85b,LTR,Gypsy?,471,572,-212,102528811,102529593 +2 + chr8 102529412 102529548 chr8,102529412,102529548,+,LTR85b,LTR,Gypsy?,551,697,-5,102528862,102529553 +6 + chr8 102529680 102529801 chr8,102529680,102529823,+,(AT)n,Simple_repeat,Simple_repeat,1,153,0,102529680,102529823 +5 + chr8 102533778 102533860 chr8,102533778,102533860,+,AluSq2,SINE,Alu,222,303,-10,102533557,102533870 +6 + chr8 102535733 102535752 chr8,102535607,102535752,-,MIRb,SINE,MIR,0,262,114,102535607,102535865 -2 - chr8 102538384 102538468 chr8,102538363,102538468,-,MER63A,DNA,hAT-Blackjack,-105,105,1,102538258,102538468 -2 - chr8 102807681 102807942 chr8,102807681,102807942,-,L2b,LINE,L2,-179,3208,2927,102807502,102810868 -6 - chr8 102808194 102808324 chr8,102808194,102808324,-,MER5B,DNA,hAT-Charlie,-8,170,48,102808186,102808371 -6 - chr8 102809089 102809185 chr8,102809089,102809185,+,L3b,LINE,CR1,4929,5038,-194,102804161,102809379 +6 + chr8 102809265 102809366 chr8,102809265,102809366,-,MIRc,SINE,MIR,-106,162,55,102809159,102809420 -6 - chr8 102809640 102809931 chr8,102809640,102809931,+,AluSx,SINE,Alu,1,292,-20,102809640,102809951 +6 + chr8 102809932 102809971 chr8,102809932,102809986,+,L1ME4b,LINE,L1,5777,5822,-483,102804156,102810469 +5 + chr8 102854455 102854526 chr8,102854319,102854608,+,AluSx1,SINE,Alu,2,296,-16,102854318,102854624 +1 + chr8 102855865 102856075 chr8,102855865,102856205,-,MER46C,DNA,TcMar-Tigger,-21,317,1,102855844,102856205 -5 - chr8 102879895 102880046 chr8,102879685,102880046,+,MLT1F2,LTR,ERVL-MaLR,1,392,-168,102879685,102880214 +1 + chr8 102880046 102880134 chr8,102880046,102880134,-,MIRc,SINE,MIR,-142,126,44,102879904,102880177 -6 - chr8 102882310 102882487 chr8,102882254,102882949,+,L1M4,LINE,L1,4574,5282,-864,102877681,102883813 +5 + chr8 102885437 102885510 chr8,102885437,102885510,+,MIR,SINE,MIR,52,116,-114,102885386,102885624 +6 + chr8 102885510 102885589 chr8,102885510,102885899,-,THE1D,LTR,ERVL-MaLR,0,381,1,102885510,102885899 -5 - chr8 102891921 102892108 chr8,102891921,102892108,+,MIRb,SINE,MIR,15,204,-64,102891907,102892172 +6 + chr8 102892285 102892341 chr8,102892285,102892583,-,AluSx3,SINE,Alu,-8,303,1,102892277,102892583 -4 - chr8 102893542 102893608 chr8,102893323,102893627,+,AluSx3,SINE,Alu,1,303,-8,102893323,102893635 +5 + chr8 102903792 102903877 chr8,102903307,102903888,-,L2c,LINE,L2,-49,3338,2701,102903258,102906588 -1 - chr8 102904224 102904338 chr8,102904202,102904338,-,L1ME4b,LINE,L1,0,892,760,102904202,102905097 -1 - chr8 102904338 102904502 chr8,102904338,102904530,+,AluJb,SINE,Alu,5,197,-115,102904334,102904645 +5 + chr8 102925075 102925123 chr8,102925075,102925163,+,MER5B,DNA,hAT-Charlie,95,178,0,102924981,102925163 +4 + chr8 102930182 102930430 chr8,102929749,102930430,-,LTR50,LTR,ERVL,-2,793,20,102929747,102930449 -1 - chr8 102930455 102930500 chr8,102930455,102930500,-,L2,LINE,L2,-679,2740,2696,102929776,102933195 -6 - chr8 102930500 102930518 chr8,102930500,102930562,+,MLT2B4,LTR,ERVL,45,100,-456,102930456,102931018 +4 + chr8 102935995 102936130 chr8,102935867,102936171,+,MLT1A0,LTR,ERVL-MaLR,177,443,-152,102935691,102936323 +1 + chr8 102941623 102941637 chr8,102941212,102941637,-,LTR16A2,LTR,ERVL,0,495,37,102941212,102941673 -1 - chr8 102941661 102941698 chr8,102941661,102941811,+,L2a,LINE,L2,3208,3425,-1,102938454,102941812 +4 + chr8 102972321 102972348 chr8,102972091,102972348,-,L1M4,LINE,L1,-5266,2251,1982,102966825,102974329 -2 - chr8 102978785 102978955 chr8,102978224,102978995,+,Tigger6a,DNA,TcMar-Tigger,6,821,-262,102978219,102979257 +1 + chr8 102992250 102992407 chr8,102992249,102992618,+,L1MA8,LINE,L1,5711,6041,-250,102986539,102992868 +3 + chr8 102995631 102995682 chr8,102995631,102995935,+,AluSx1,SINE,Alu,1,295,-17,102995631,102995952 +4 + chr8 103020187 103020329 chr8,103020118,103020329,-,MIRb,SINE,MIR,0,268,13,103020118,103020341 +5 - chr8 103020327 103020358 chr8,103020327,103020418,+,MIR3,SINE,MIR,112,202,-6,103020216,103020424 -2 + chr8 103121159 103121213 chr8,103121159,103121451,-,L2c,LINE,L2,-529,2890,2585,103120630,103124035 -4 - chr8 103132739 103132966 chr8,103132739,103132988,+,MIRb,SINE,MIR,7,266,-2,103132733,103132990 +5 + chr8 103132963 103132988 chr8,103132739,103132988,+,MIRb,SINE,MIR,7,266,-2,103132733,103132990 -5 + chr8 103165509 103165645 chr8,103165494,103165645,-,MIR3,SINE,MIR,-15,193,39,103165479,103165683 +5 - chr8 103165712 103165800 chr8,103165712,103165800,-,MIR,SINE,MIR,-35,227,128,103165677,103165927 +6 - chr8 103165811 103165931 chr8,103165811,103165931,+,MIRb,SINE,MIR,102,234,-34,103165710,103165965 -5 + chr8 103172097 103172128 chr8,103172097,103172128,+,(GCTCCT)n,Simple_repeat,Simple_repeat,1,32,0,103172097,103172128 -6 + chr8 103172128 103172140 chr8,103172128,103172147,+,(GCTTCT)n,Simple_repeat,Simple_repeat,1,53,0,103172128,103172147 -1 + chr8 103190964 103191209 chr8,103190913,103191209,+,AluSx,SINE,Alu,1,294,-18,103190913,103191227 -5 + chr8 103234280 103234372 chr8,103234259,103234573,+,AluJr,SINE,Alu,3,295,-17,103234257,103234590 -3 + chr8 103267242 103267436 chr8,103267242,103267436,-,MamRTE1,LINE,RTE-BovB,-286,3526,3305,103266956,103270740 +5 - chr8 103267452 103267499 chr8,103267452,103267499,+,MamTip2,DNA,hAT-Tip100,39,86,-219,103267414,103267718 -6 + chr8 103268268 103268427 chr8,103268180,103268427,-,LTR79,LTR,ERVL,0,527,281,103268180,103268707 +5 - chr8 103268692 103268726 chr8,103268670,103268726,+,MIRb,SINE,MIR,146,200,-68,103268525,103268794 -4 + chr8 103268736 103268843 chr8,103268736,103268957,+,MIRb,SINE,MIR,14,259,-3,103268723,103268960 -2 + chr8 103277978 103278021 chr8,103277938,103278138,+,MIRb,SINE,MIR,45,254,-14,103277894,103278152 -3 + chr8 103383208 103383388 chr8,103383208,103383388,-,L2c,LINE,L2,-57,3330,3152,103383151,103386539 +6 - chr8 103383395 103383854 chr8,103383395,103384000,+,L1MC5,LINE,L1,7828,8477,-827,103375568,103384827 -1 + chr8 103464689 103464736 chr8,103464689,103464736,+,(AC)n,Simple_repeat,Simple_repeat,1,47,0,103464689,103464736 +6 + chr8 103464812 103464976 chr8,103464812,103464976,+,MIR,SINE,MIR,2,172,-90,103464811,103465066 +6 + chr8 103465019 103465178 chr8,103465019,103465178,+,L1MEg,LINE,L1,886,1053,-5031,103464134,103470209 +6 + chr8 103465179 103465398 chr8,103465179,103465398,-,MIR,SINE,MIR,-26,236,15,103465153,103465412 -6 - chr8 103465395 103465599 chr8,103465395,103465599,-,MIR,SINE,MIR,-36,226,5,103465359,103465603 -6 - chr8 103466090 103466290 chr8,103466090,103466290,-,AluSx,SINE,Alu,-6,306,107,103466084,103466396 -6 - chr8 103466348 103466571 chr8,103466348,103466571,-,MIR,SINE,MIR,-14,248,10,103466334,103466580 -6 - chr8 103466574 103466864 chr8,103466574,103466864,-,AluSx,SINE,Alu,-22,290,2,103466552,103466865 -6 - chr8 103467033 103467327 chr8,103467033,103467327,-,AluJo,SINE,Alu,-12,300,1,103467021,103467327 -6 - chr8 103467529 103467554 chr8,103467529,103467554,+,(T)n,Simple_repeat,Simple_repeat,1,25,0,103467529,103467554 +6 + chr8 103467557 103467841 chr8,103467557,103467841,-,AluJr,SINE,Alu,-30,282,2,103467527,103467842 -6 - chr8 103467850 103468247 chr8,103467850,103468247,-,LTR84b,LTR,ERVL,-369,392,2,103467481,103468248 -6 - chr8 103468359 103468663 chr8,103468359,103468663,-,AluY,SINE,Alu,-12,299,1,103468347,103468663 -6 - chr8 103468848 103468957 chr8,103468848,103468957,+,L2a,LINE,L2,3310,3426,0,103465539,103468957 +6 + chr8 103481319 103481364 chr8,103481319,103481364,+,(CATAA)n,Simple_repeat,Simple_repeat,1,48,0,103481319,103481364 -6 + chr8 103487561 103487681 chr8,103487543,103487710,+,AluSc,SINE,Alu,139,305,-4,103487405,103487714 -3 + chr8 103489697 103489767 chr8,103489550,103489767,-,L1MC5,LINE,L1,-158,9146,8929,103489392,103498695 +4 - chr8 103489767 103489849 chr8,103489767,103490061,+,AluJr4,SINE,Alu,34,312,0,103489734,103490061 -2 + chr8 103498176 103498232 chr8,103498135,103498232,+,MIR3,SINE,MIR,42,159,-49,103498094,103498281 -4 + chr8 104419512 104420048 chr8,104419423,104420048,+,L1MC3,LINE,L1,7121,7785,0,104412303,104420048 -5 + chr8 104420700 104420745 chr8,104420700,104420745,+,A-rich,Low_complexity,Low_complexity,1,45,0,104420700,104420745 -6 + chr8 104420902 104421068 chr8,104420902,104421068,-,MIRc,SINE,MIR,-1,267,101,104420901,104421168 +6 - chr8 104421352 104421500 chr8,104421352,104421659,+,AluY,SINE,Alu,2,307,-4,104421351,104421663 -1 + chr8 104478544 104478711 chr8,104478544,104478711,-,L1MB7,LINE,L1,-1,6183,6014,104478543,104484724 +6 - chr8 104478711 104479180 chr8,104478711,104479180,+,MER67D,LTR,ERV1,6,486,-28,104478706,104479208 -6 + chr8 104479220 104479760 chr8,104479220,104479760,-,L1MB7,LINE,L1,-181,6003,5444,104479039,104485203 +6 - chr8 104479979 104480080 chr8,104479979,104480080,+,MIRb,SINE,MIR,148,254,-14,104479832,104480094 -6 + chr8 104480160 104480461 chr8,104480160,104480461,-,AluJr,SINE,Alu,-22,290,1,104480138,104480461 +6 - chr8 104480602 104480694 chr8,104480602,104480694,-,Tigger7,DNA,TcMar-Tigger,-4,2487,2391,104480598,104483084 +6 - chr8 104480686 104480783 chr8,104480686,104481190,-,Tigger7,DNA,TcMar-Tigger,-1981,510,5,104478705,104481194 +1 - chr8 105188536 105188606 chr8,105188346,105188933,+,L1M3d,LINE,L1,5,507,-5384,105188342,105194317 -1 + chr8 105675903 105676004 chr8,105675784,105676004,-,MIR,SINE,MIR,-12,250,12,105675772,105676015 -2 - chr8 105678926 105679031 chr8,105678926,105679059,+,MIRc,SINE,MIR,1,148,-120,105678926,105679179 +5 + chr8 105782387 105782401 chr8,105782235,105782401,-,MIRc,SINE,MIR,-2,206,23,105782233,105782423 +4 - chr8 105784950 105785217 chr8,105784950,105785286,+,L2,LINE,L2,2118,2472,-947,105782833,105786233 -5 + chr8 105797140 105797224 chr8,105797140,105797230,+,MIRc,SINE,MIR,39,142,-126,105797102,105797356 -2 + chr8 105798169 105798442 chr8,105798169,105798470,+,AluSx,SINE,Alu,1,303,-9,105798169,105798479 -5 + chr8 105833789 105833871 chr8,105833789,105833871,+,L3,LINE,CR1,3888,3970,-129,105829902,105834000 +6 + chr8 105911805 105911869 chr8,105911686,105912062,-,THE1D,LTR,ERVL-MaLR,0,381,1,105911686,105912062 +1 - chr8 105927642 105927717 chr8,105927382,105927771,+,MLT1G3-int,LTR,ERVL-MaLR,1,537,-834,105927382,105928605 -3 + chr8 106060135 106060234 chr8,106059648,106060242,+,LTR26,LTR,ERV1,1,603,0,106059648,106060242 -3 + chr8 106060473 106060524 chr8,106060473,106060807,+,LTR18A,LTR,ERVL,1,357,0,106060473,106060807 -1 + chr8 106265435 106265451 chr8,106265329,106265451,+,MIR,SINE,MIR,137,262,0,106265193,106265451 -5 + chr8 106270271 106270354 chr8,106270271,106270354,+,(CGC)n,Simple_repeat,Simple_repeat,1,86,0,106270271,106270354 +6 + chr8 106522721 106522793 chr8,106522621,106522793,+,MIRb,SINE,MIR,29,198,-10,106522593,106522803 -4 + chr8 106522815 106522833 chr8,106522815,106523410,-,MLT1E3,LTR,ERVL-MaLR,0,624,1,106522815,106523410 +2 - chr8 106656187 106656365 chr8,106656187,106656546,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,106656187,106656546 +2 - chr8 108226200 108226323 chr8,108226188,108226495,-,AluSq2,SINE,Alu,-8,305,1,108226180,108226495 -1 - chr8 108227222 108227332 chr8,108227042,108227332,+,AluJb,SINE,Alu,1,291,-21,108227042,108227353 +2 + chr8 108227369 108227544 chr8,108227369,108227884,+,L3,LINE,CR1,3457,4022,-77,108223913,108227961 +5 + chr8 108895029 108895135 chr8,108895007,108895164,-,MLT1L,LTR,ERVL-MaLR,-145,465,229,108894862,108895392 +5 - chr8 108908217 108908271 chr8,108908158,108908289,+,FLAM_C,SINE,Alu,2,133,-10,108908157,108908299 -5 + chr8 108918613 108918646 chr8,108918613,108918693,+,L3b,LINE,CR1,5125,5212,-20,108913489,108918713 -2 + chr8 109043677 109043739 chr8,109043592,109043968,-,THE1B,LTR,ERVL-MaLR,0,364,1,109043592,109043968 +3 - chr8 109044056 109044127 chr8,109043968,109045548,-,THE1B-int,LTR,ERVL-MaLR,0,1580,1,109043968,109045548 +3 - chr8 109063401 109063417 chr8,109063401,109063567,+,MIR,SINE,MIR,8,172,-90,109063394,109063657 -1 + chr8 109298605 109298704 chr8,109298605,109298704,+,L1MD,LINE,L1,5197,5298,-848,109293409,109299552 +6 + chr8 109298737 109298929 chr8,109298737,109301075,+,L1PBa1,LINE,L1,254,2618,-4245,109298484,109305320 +4 + chr8 109315205 109315818 chr8,109315205,109315818,+,LTR48B,LTR,ERV1,3,644,0,109315203,109315818 +6 + chr8 109645520 109645563 chr8,109645520,109645563,+,MIRc,SINE,MIR,20,64,-204,109645501,109645767 +6 + chr8 109645627 109645796 chr8,109645627,109645796,-,FRAM,SINE,Alu,0,176,8,109645627,109645803 -6 - chr8 109645819 109645912 chr8,109645819,109645912,+,MIR,SINE,MIR,103,192,-70,109645717,109645982 +6 + chr8 109646732 109647245 chr8,109646732,109647245,+,L2a,LINE,L2,2516,3008,-411,109644217,109647656 +6 + chr8 109647521 109647612 chr8,109647521,109647612,+,L2a,LINE,L2,3335,3426,0,109644187,109647612 +6 + chr8 110334743 110334784 chr8,110334281,110334784,-,MLT1H,LTR,ERVL-MaLR,-2,547,12,110334279,110334795 +5 - chr8 110334786 110334929 chr8,110334786,110334929,+,L1ME3Cz,LINE,L1,3858,4009,-2137,110330929,110337066 -6 + chr8 110334980 110335199 chr8,110334980,110335199,-,MLT1C,LTR,ERVL-MaLR,0,467,253,110334980,110335451 +6 - chr8 110349545 110349607 chr8,110349050,110349671,+,L2a,LINE,L2,3117,3426,0,110345934,110349671 -1 + chr8 110609241 110609290 chr8,110609175,110609290,-,MIRb,SINE,MIR,-58,210,94,110609117,110609383 -1 - chr8 110627366 110627455 chr8,110627344,110627455,-,AluJo,SINE,Alu,-12,300,190,110627332,110627644 -2 - chr8 110632351 110632394 chr8,110632278,110632764,-,LTR40a,LTR,ERVL,-2,517,1,110632276,110632764 -5 - chr8 110766863 110766916 chr8,110766674,110767120,+,MLT1C,LTR,ERVL-MaLR,6,467,0,110766669,110767120 +1 + chr8 110772615 110772759 chr8,110772615,110772845,+,MLT1B,LTR,ERVL-MaLR,1,225,-149,110772615,110772994 +5 + chr8 110937690 110937727 chr8,110937381,110937754,+,L1PA16,LINE,L1,5797,6166,0,110931585,110937754 -5 + chr8 110982950 110983140 chr8,110982676,110983165,+,MLT1J-int,LTR,ERVL-MaLR,903,1365,-22,110981774,110983187 -5 + chr8 111003414 111003450 chr8,111002450,111003821,+,L1MC1,LINE,L1,4914,6316,-17,110997537,111003838 -3 + chr8 111014904 111014989 chr8,111014733,111014989,+,THE1B,LTR,ERVL-MaLR,1,267,-97,111014733,111015086 -4 + chr8 111014990 111015032 chr8,111014990,111016139,+,THE1B-int,LTR,ERVL-MaLR,428,1580,0,111014563,111016139 -2 + chr8 111179193 111179238 chr8,111178981,111179238,-,MLT1H2,LTR,ERVL-MaLR,-7,548,270,111178974,111179507 +5 - chr8 111179314 111179358 chr8,111179314,111179408,-,MLT1H2,LTR,ERVL-MaLR,-376,173,73,111178938,111179480 +2 - chr8 111179848 111179872 chr8,111179689,111183654,-,L1PA5,LINE,L1,-1,6153,2181,111179688,111185834 +5 - chr8 111183292 111183654 chr8,111179689,111183654,-,L1PA5,LINE,L1,-1,6153,2181,111179688,111185834 +5 - chr8 111376639 111376710 chr8,111376431,111376875,-,L1MCc,LINE,L1,-6350,778,218,111370081,111377092 -1 - chr8 111416515 111416542 chr8,111411541,111416659,-,L1PA16,LINE,L1,-554,6381,1181,111410987,111417839 -1 - chr8 111466178 111466300 chr8,111466107,111466435,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,111466107,111466435 -3 - chr8 111470403 111470499 chr8,111470403,111470499,+,MER52A,LTR,ERV1,1,98,-1657,111470403,111472156 +6 + chr8 111470501 111470617 chr8,111470501,111471441,+,MER52A,LTR,ERV1,292,1196,-559,111470210,111472000 +5 + chr8 111513047 111513135 chr8,111513040,111513559,+,L1MA2,LINE,L1,5753,6303,-1,111507288,111513560 +3 + chr8 111542049 111542115 chr8,111542042,111542115,-,MER31B,LTR,ERV1,-390,76,1,111541652,111542115 -2 - chr8 111542182 111542223 chr8,111542182,111542339,-,L1MEg,LINE,L1,-5876,208,44,111536306,111542382 -4 - chr8 111742012 111742083 chr8,111741752,111742149,-,MER110A,LTR,ERV1,0,468,1,111741752,111742149 -1 - chr8 111745442 111745607 chr8,111745175,111745700,+,LTR40A1,LTR,ERVL,24,534,-50,111745152,111745750 +1 + chr8 113615504 113615847 chr8,113615486,113615847,+,LTR16D1,LTR,ERVL,200,613,-62,113615287,113615909 +1 + chr8 113616668 113616958 chr8,113616668,113617221,+,L1MEg,LINE,L1,1739,2328,-3818,113614930,113621039 +5 + chr8 114282067 114282146 chr8,114281697,114282146,+,LTR7,LTR,ERV1,1,448,-2,114281697,114282148 +1 + chr8 114282148 114282294 chr8,114282148,114285388,+,HERVH-int,LTR,ERV1,1,2987,-4726,114282148,114290114 +4 + chr8 114284219 114284533 chr8,114282148,114285388,+,HERVH-int,LTR,ERV1,1,2987,-4726,114282148,114290114 +3 + chr8 114287722 114287733 chr8,114287284,114287733,+,LTR7,LTR,ERV1,1,448,-2,114287284,114287735 +2 + chr8 114287764 114287815 chr8,114287764,114287815,-,MIR,SINE,MIR,-13,249,198,114287751,114288012 -6 - chr8 114287937 114287996 chr8,114287937,114288080,+,MIRb,SINE,MIR,83,232,-36,114287855,114288116 +5 + chr8 115963864 115964158 chr8,115963864,115964195,-,MamRTE1,LINE,RTE-BovB,-2566,1246,895,115961298,115965089 +2 - chr8 115976070 115976135 chr8,115976036,115976469,-,LTR33C,LTR,ERVL,-123,506,51,115975913,115976519 +3 - chr8 116119689 116119783 chr8,116119666,116119951,+,AluSz,SINE,Alu,1,285,-27,116119666,116119978 -3 + chr8 116130198 116130280 chr8,116130168,116130290,+,HAL1,LINE,L1,527,691,-1816,116129642,116132106 -3 + chr8 116273481 116273703 chr8,116270194,116273703,-,L1PA15,LINE,L1,-3190,3576,13,116267004,116273715 +4 - chr8 116402564 116402984 chr8,116402564,116403173,-,MLT1E1A,LTR,ERVL-MaLR,0,680,1,116402564,116403173 +2 - chr8 116874648 116874689 chr8,116874648,116874689,+,G-rich,Low_complexity,Low_complexity,1,41,0,116874648,116874689 +6 + chr8 116875429 116876868 chr8,116875429,116877242,+,L1MA4,LINE,L1,4469,6300,0,116870961,116877242 +5 + chr8 117128455 117128477 chr8,117128420,117128477,+,(GT)n,Simple_repeat,Simple_repeat,1,57,0,117128420,117128477 +1 + chr8 117130276 117130299 chr8,117130276,117130326,-,L3,LINE,CR1,-2306,1793,1745,117127970,117132070 -5 - chr8 118189946 118189970 chr8,118189946,118189979,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,118189946,118189979 -1 + chr8 118282139 118282160 chr8,118282102,118282313,-,MIRc,SINE,MIR,-35,233,11,118282067,118282323 -1 - chr8 118282242 118282313 chr8,118282102,118282313,-,MIRc,SINE,MIR,-35,233,11,118282067,118282323 -1 - chr8 118284660 118284963 chr8,118284660,118284969,+,AluY,SINE,Alu,1,309,-2,118284660,118284971 +5 + chr8 118288239 118288356 chr8,118288140,118288357,-,MIRb,SINE,MIR,-30,238,8,118288110,118288364 -5 - chr8 118295675 118295694 chr8,118295646,118295943,-,AluJb,SINE,Alu,-9,303,1,118295637,118295943 -5 - chr8 118394932 118394992 chr8,118394932,118395127,+,MIR,SINE,MIR,18,235,-27,118394915,118395154 +4 + chr8 118400277 118400405 chr8,118400170,118400405,-,MIR,SINE,MIR,-14,248,2,118400156,118400406 -2 - chr8 119215397 119215627 chr8,119215397,119215817,-,L2c,LINE,L2,-1,3386,2953,119215396,119218769 +5 - chr8 119221131 119221347 chr8,119221131,119221347,-,L2,LINE,L2,-1443,1976,1754,119219688,119223100 +6 - chr8 119223284 119223387 chr8,119223264,119223410,+,MIR,SINE,MIR,1,162,-68,119223264,119223478 -3 + chr8 119419910 119420009 chr8,119419831,119420009,+,Charlie19a,DNA,hAT-Charlie,59,229,-157,119419773,119420166 -5 + chr8 119437957 119438007 chr8,119437799,119438010,-,MER58A,DNA,hAT-Charlie,-13,211,1,119437786,119438010 +3 - chr8 119462287 119462350 chr8,119456201,119462359,-,L1PA3,LINE,L1,-3,6152,2,119456198,119462360 +1 - chr8 119838736 119839033 chr8,119838723,119839033,-,AluSz,SINE,Alu,-2,310,1,119838721,119839033 +5 - chr8 119839033 119839299 chr8,119839033,119839299,+,L2c,LINE,L2,2065,2395,-1024,119836969,119840323 -6 + chr8 119839747 119840031 chr8,119839747,119840031,+,L2c,LINE,L2,2998,3282,-105,119836750,119840136 -6 + chr8 119840266 119840385 chr8,119840266,119840629,-,L2b,LINE,L2,-143,3244,2844,119840123,119843472 +1 - chr8 119867419 119867479 chr8,119867343,119867479,+,L1ME3Cz,LINE,L1,763,904,-93,119866581,119867572 -5 + chr8 119867516 119867532 chr8,119867516,119867532,-,AluSx,SINE,Alu,-16,296,283,119867500,119867814 +6 - chr8 119867532 119867557 chr8,119867532,119867557,+,(ATTT)n,Simple_repeat,Simple_repeat,1,25,0,119867532,119867557 -6 + chr8 119867557 119867649 chr8,119867557,119867837,-,AluSx,SINE,Alu,-30,282,2,119867527,119867838 +2 - chr8 119872478 119872497 chr8,119872327,119872497,+,MIR,SINE,MIR,80,256,-6,119872248,119872503 -5 + chr8 119872821 119873004 chr8,119872705,119873004,-,AluSp,SINE,Alu,-27,286,2,119872678,119873005 +4 - chr8 119873013 119873130 chr8,119873013,119873130,+,MIRb,SINE,MIR,79,203,-65,119872935,119873195 -6 + chr8 119874442 119874488 chr8,119874442,119874532,+,MIRb,SINE,MIR,101,197,-71,119874342,119874603 -1 + chr8 120052180 120052336 chr8,120052009,120052336,+,L2c,LINE,L2,3028,3349,-38,120048982,120052374 +1 + chr8 120055911 120055946 chr8,120055647,120055946,-,AluSc,SINE,Alu,-11,298,1,120055636,120055946 -2 - chr8 120761253 120761361 chr8,120761093,120761361,+,L1MCb,LINE,L1,614,875,-5170,120760480,120766531 +1 + chr8 120765778 120765798 chr8,120765422,120765798,-,MSTD,LTR,ERVL-MaLR,0,396,1,120765422,120765798 -2 - chr8 120765798 120765864 chr8,120765798,120765921,+,MLT1J,LTR,ERVL-MaLR,264,382,-130,120765535,120766051 +4 + chr8 120768705 120768789 chr8,120768705,120768789,+,MIRc,SINE,MIR,77,162,-106,120768629,120768895 +6 + chr8 120769341 120769698 chr8,120769341,120769715,+,MLT1G,LTR,ERVL-MaLR,15,379,-212,120769327,120769927 +4 + chr8 120776485 120776596 chr8,120776485,120776596,+,MamRep4096,DNA,hAT-Tip100,26,135,-291,120776460,120776887 +6 + chr8 120776620 120776718 chr8,120776620,120776718,+,MamRep4096,DNA,hAT-Tip100,326,423,-3,120776295,120776721 +6 + chr8 120812990 120813133 chr8,120812990,120813133,-,Tigger16b,DNA,TcMar-Tigger,-19,317,175,120812971,120813307 -6 - chr8 120913065 120913159 chr8,120912867,120913235,+,THE1D,LTR,ERVL-MaLR,1,381,0,120912867,120913235 +1 + chr8 121043383 121043475 chr8,121043364,121043482,-,AluJr,SINE,Alu,-180,132,16,121043184,121043497 -3 - chr8 121641229 121641254 chr8,121641229,121641254,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,121641229,121641254 +6 + chr8 121644530 121644693 chr8,121644530,121644971,-,Charlie1a,DNA,hAT-Charlie,-2,1453,969,121644528,121645939 -5 - chr8 121679126 121679257 chr8,121679116,121679415,-,AluSz,SINE,Alu,-14,298,1,121679102,121679415 -1 - chr8 121680409 121680441 chr8,121680409,121680567,-,Charlie2b,DNA,hAT-Charlie,0,2782,2624,121680409,121683190 +2 - chr8 121707549 121707631 chr8,121707549,121707784,+,MIR,SINE,MIR,8,252,-10,121707542,121707794 +5 + chr8 121884724 121884806 chr8,121884526,121884806,+,MLT1K,LTR,ERVL-MaLR,106,400,-195,121884421,121885001 +1 + chr8 121888825 121888977 chr8,121886377,121890548,-,L1PA16,LINE,L1,-9,6494,2232,121886368,121892779 -3 - chr8 121903439 121903540 chr8,121903266,121903676,-,L2,LINE,L2,-375,3044,2623,121902891,121906298 -3 - chr8 121954640 121954675 chr8,121954622,121954675,-,AluSz6,SINE,Alu,-13,299,247,121954609,121954921 +5 - chr8 121954676 121955134 chr8,121954676,121955134,-,L1P2,LINE,L1,-5722,462,4,121948954,121955137 +6 - chr8 121981617 121981737 chr8,121981461,121981763,+,AluSp,SINE,Alu,2,306,-7,121981460,121981770 -3 + chr8 122416834 122417022 chr8,122416834,122418107,-,MLT1G3-int,LTR,ERVL-MaLR,-8,1401,21,122416826,122418127 +2 - chr8 122485515 122485582 chr8,122485510,122485582,+,MLT1L,LTR,ERVL-MaLR,547,606,-4,122484964,122485586 -5 + chr8 122486433 122486577 chr8,122486351,122486577,+,LTR33,LTR,ERVL,2,233,-282,122486350,122486859 -4 + chr8 122487387 122487466 chr8,122487166,122487986,-,L1PA7,LINE,L1,-11,6143,5310,122487155,122493295 +3 - chr8 122670385 122670500 chr8,122670137,122670503,-,Tigger2a,DNA,TcMar-Tigger,-72,362,1,122670065,122670503 +5 - chr8 122671269 122671289 chr8,122670524,122671289,+,HAL1,LINE,L1,904,1687,-820,122669621,122672109 -4 + chr8 122671289 122671388 chr8,122671289,122671397,+,U13_,snRNA,snRNA,1,108,0,122671289,122671397 -2 + chr8 122700269 122700323 chr8,122700225,122700323,-,MLT1B,LTR,ERVL-MaLR,-73,317,213,122700152,122700535 +5 - chr8 122700373 122700406 chr8,122700373,122700406,+,(GTG)n,Simple_repeat,Simple_repeat,1,34,0,122700373,122700406 -6 + chr8 122703067 122703160 chr8,122702975,122703160,+,MIRb,SINE,MIR,85,258,-10,122702891,122703170 -4 + chr8 122703160 122703188 chr8,122703160,122703188,+,(ATGCTG)n,Simple_repeat,Simple_repeat,1,27,0,122703160,122703188 -6 + chr8 122703188 122703331 chr8,122703188,122703331,+,(TGATGATGC)n,Simple_repeat,Simple_repeat,1,148,0,122703188,122703331 -6 + chr8 122703331 122703385 chr8,122703331,122703385,+,(ATGCTG)n,Simple_repeat,Simple_repeat,4,57,0,122703328,122703385 -6 + chr8 122807746 122807838 chr8,122807681,122807891,-,MIR,SINE,MIR,0,262,3,122807681,122807893 -1 - chr8 122808743 122808801 chr8,122808631,122808871,-,MIR,SINE,MIR,0,262,4,122808631,122808874 -1 - chr8 122810453 122810533 chr8,122810407,122810533,+,L3,LINE,CR1,3220,3355,-744,122807188,122811277 +2 + chr8 122811930 122812003 chr8,122811862,122812315,-,L2a,LINE,L2,0,3426,2865,122811862,122815179 -3 - chr8 122815424 122815439 chr8,122815377,122815439,+,Tigger1,DNA,TcMar-Tigger,1,61,-2357,122815377,122817796 +2 + chr8 122815436 122815774 chr8,122815436,122815805,+,Tigger1,DNA,TcMar-Tigger,1715,2082,-336,122813722,122816141 +5 + chr8 122816378 122816418 chr8,122816098,122816418,+,Tigger1,DNA,TcMar-Tigger,2083,2418,0,122814016,122816418 +2 + chr8 122816446 122816517 chr8,122816446,122816555,-,AluSc,SINE,Alu,-12,297,189,122816434,122816743 -5 - chr8 122977026 122977225 chr8,122977003,122977446,-,MLT1J,LTR,ERVL-MaLR,-35,477,8,122976968,122977453 +5 - chr8 123002560 123002629 chr8,123002457,123002629,+,LTR103_Mam,LTR,ERV1?,1,169,-306,123002457,123002935 +1 + chr8 123030341 123030490 chr8,123030341,123030490,+,MIRb,SINE,MIR,99,250,-18,123030243,123030508 +6 + chr8 123181638 123181904 chr8,123181573,123181904,+,LTR16C,LTR,ERVL,179,487,-2,123181395,123181906 -5 + chr8 123201185 123201297 chr8,123201185,123201297,-,MIR,SINE,MIR,-73,189,79,123201112,123201375 +6 - chr8 123201575 123201603 chr8,123201575,123201603,+,A-rich,Low_complexity,Low_complexity,1,28,0,123201575,123201603 -6 + chr8 123201923 123201982 chr8,123201923,123202032,-,L2c,LINE,L2,-240,3147,3042,123201683,123205073 +2 - chr8 123202208 123202636 chr8,123202116,123202636,+,L2b,LINE,L2,2808,3375,0,123199309,123202636 -4 + chr8 123202681 123202743 chr8,123202681,123202789,+,MER112,DNA,hAT-Charlie,5,117,-144,123202677,123202933 -1 + chr8 123563070 123563412 chr8,123563025,123563459,-,MLT1N2,LTR,ERVL-MaLR,-3,559,99,123563022,123563557 +5 - chr8 123634314 123634349 chr8,123634283,123634349,-,MIR3,SINE,MIR,-46,162,98,123634237,123634446 -2 - chr8 123639549 123639644 chr8,123639549,123639858,-,L2b,LINE,L2,0,3375,3017,123639549,123642874 -5 - chr8 123924759 123924801 chr8,123924609,123924801,+,MER105,DNA,hAT-Charlie,3,203,0,123924607,123924801 -5 + chr8 123925721 123925739 chr8,123925608,123925739,-,Charlie7a,DNA,hAT-Charlie,-129,143,1,123925479,123925739 +4 - chr8 123925831 123925933 chr8,123925831,123925996,-,MER45A,DNA,hAT-Tip100,-6,172,1,123925825,123925996 +1 - chr8 123984138 123984374 chr8,123984128,123984374,-,MIRb,SINE,MIR,-10,258,7,123984118,123984380 +5 - chr8 123984415 123984533 chr8,123984415,123984533,-,FLAM_A,SINE,Alu,-15,127,4,123984400,123984536 +6 - chr8 123985144 123985301 chr8,123985144,123985301,+,MIR3,SINE,MIR,43,201,-7,123985102,123985308 -6 + chr8 123985492 123985678 chr8,123985492,123985678,+,MIRc,SINE,MIR,77,259,-9,123985416,123985687 -6 + chr8 124014283 124014474 chr8,124014010,124014675,-,LTR48,LTR,ERV1,0,787,1,124014010,124014675 +3 - chr8 124040440 124040468 chr8,124040425,124040539,+,MIR,SINE,MIR,63,192,-70,124040363,124040609 -1 + chr8 124040626 124040782 chr8,124040545,124040955,-,MSTC,LTR,ERVL-MaLR,0,428,1,124040545,124040955 +1 - chr8 124046336 124046363 chr8,124046336,124046363,+,(CTTT)n,Simple_repeat,Simple_repeat,1,27,0,124046336,124046363 -6 + chr8 124046720 124046776 chr8,124046720,124046872,-,MIR3,SINE,MIR,-7,201,46,124046713,124046917 +2 - chr8 124171428 124171522 chr8,124171344,124171724,-,THE1D,LTR,ERVL-MaLR,0,381,5,124171344,124171728 +1 - chr8 124192681 124192716 chr8,124192681,124192716,-,AluSz,SINE,Alu,0,312,280,124192681,124192995 +6 - chr8 124192716 124192758 chr8,124192716,124192758,+,(TG)n,Simple_repeat,Simple_repeat,1,42,0,124192716,124192758 -6 + chr8 124192758 124193034 chr8,124192758,124193034,-,AluSz,SINE,Alu,-33,279,3,124192725,124193036 +6 - chr8 124193520 124193544 chr8,124193520,124193597,+,L1ME4a,LINE,L1,5954,6026,-98,124187567,124193695 -2 + chr8 124208116 124208321 chr8,124208051,124208532,-,MLT1F2,LTR,ERVL-MaLR,-1,559,10,124208050,124208541 +3 - chr8 124276114 124276236 chr8,124276088,124276377,-,AluJr,SINE,Alu,-8,304,1,124276080,124276377 -3 - chr8 124277536 124277584 chr8,124277536,124277839,+,AluSz6,SINE,Alu,1,303,-9,124277536,124277848 +5 + chr8 124306189 124306307 chr8,124305925,124306307,+,L3,LINE,CR1,2552,2976,-1123,124303374,124307430 -5 + chr8 124306419 124306666 chr8,124306419,124306666,+,Tigger2,DNA,TcMar-Tigger,2,262,-2456,124306418,124309122 -6 + chr8 124306666 124306961 chr8,124306666,124306961,+,AluSx,SINE,Alu,1,295,-17,124306666,124306978 -6 + chr8 124306961 124308376 chr8,124306961,124309331,+,Tigger2,DNA,TcMar-Tigger,263,2718,0,124306699,124309331 -1 + chr8 124462485 124462786 chr8,124462365,124462786,-,L1MEc,LINE,L1,-5106,1294,888,124457259,124463673 +5 - chr8 124462786 124463083 chr8,124462786,124463083,-,AluSx,SINE,Alu,-10,302,1,124462776,124463083 +6 - chr8 124463083 124463819 chr8,124463083,124463819,-,L1MEc,LINE,L1,-5513,887,103,124457570,124463921 +6 - chr8 124464424 124464527 chr8,124464424,124464527,+,ERV3-16A3_I-int,LTR,ERVL,814,919,-4307,124463611,124468834 -6 + chr8 124464530 124465020 chr8,124464530,124465020,+,ERVL-E-int,LTR,ERVL,2515,3034,-2633,124462016,124467653 -6 + chr8 124465015 124465163 chr8,124465015,124465163,+,ERVL-E-int,LTR,ERVL,2928,3087,-2139,124462088,124467302 -6 + chr8 124465186 124465279 chr8,124465186,124465279,+,ERVL-E-int,LTR,ERVL,3289,3390,-2324,124461898,124467603 -6 + chr8 124465255 124465953 chr8,124465255,124465953,+,ERV3-16A3_I-int,LTR,ERVL,3279,4012,-1214,124461977,124467167 -6 + chr8 124465953 124466234 chr8,124465953,124466234,+,AluSp,SINE,Alu,1,284,-29,124465953,124466263 -6 + chr8 124466234 124466267 chr8,124466234,124466267,+,(AAC)n,Simple_repeat,Simple_repeat,1,35,0,124466234,124466267 -6 + chr8 124466267 124466828 chr8,124466267,124466828,+,ERV3-16A3_I-int,LTR,ERVL,4013,4532,-694,124462255,124467522 -6 + chr8 124466828 124467266 chr8,124466828,124467266,+,MLT1D,LTR,ERVL-MaLR,1,505,0,124466828,124467266 -6 + chr8 124467266 124467547 chr8,124467266,124467547,+,ERV3-16A3_I-int,LTR,ERVL,4533,4822,-404,124462734,124467951 -6 + chr8 124467621 124467658 chr8,124467621,124467821,+,L1M4,LINE,L1,15,225,-7292,124467607,124475113 -2 + chr8 124473371 124473636 chr8,124473371,124473636,+,MIRb,SINE,MIR,22,268,0,124473350,124473636 -6 + chr8 124489023 124489182 chr8,124489023,124489182,+,MER112,DNA,hAT-Charlie,53,261,0,124488971,124489182 +6 + chr8 124489333 124489403 chr8,124489333,124489403,+,(TTTC)n,Simple_repeat,Simple_repeat,1,72,0,124489333,124489403 +6 + chr8 124489403 124489713 chr8,124489403,124489713,-,AluSg,SINE,Alu,-2,308,1,124489401,124489713 -6 - chr8 124490231 124490282 chr8,124490231,124490535,+,AluSx1,SINE,Alu,1,308,-4,124490231,124490539 +4 + chr8 124491062 124491083 chr8,124490748,124491083,-,AluSx1,SINE,Alu,-12,300,1,124490736,124491083 -2 - chr8 124491109 124491374 chr8,124491109,124491374,+,L2a,LINE,L2,2739,3046,-373,124488371,124491747 +6 + chr8 124580181 124580206 chr8,124580181,124580206,+,(CATA)n,Simple_repeat,Simple_repeat,1,25,0,124580181,124580206 +6 + chr8 124811746 124811848 chr8,124811746,124811882,-,HAL1,LINE,L1,-698,1809,1654,124811048,124813535 +2 - chr8 124812077 124812187 chr8,124811887,124812739,-,L1PA15,LINE,L1,-5,6160,5278,124811882,124818016 +3 - chr8 124840124 124840249 chr8,124840102,124840249,-,MIR,SINE,MIR,0,262,121,124840102,124840369 +4 - chr8 124849745 124849780 chr8,124849485,124849780,-,AluJo,SINE,Alu,-16,296,1,124849469,124849780 -2 - chr8 124849799 124849868 chr8,124849799,124849868,-,MIRc,SINE,MIR,-37,231,161,124849762,124850028 -6 - chr8 124849971 124850075 chr8,124849971,124850075,-,MIRb,SINE,MIR,-9,259,152,124849962,124850226 -6 - chr8 124850129 124850217 chr8,124850129,124850657,-,L1MB3,LINE,L1,-20,6163,5673,124850109,124856329 -5 - chr8 124857363 124857516 chr8,124857216,124857672,-,LTR16A2,LTR,ERVL,0,495,25,124857216,124857696 +1 - chr8 124936536 124936624 chr8,124936536,124936624,-,MLT1G3,LTR,ERVL-MaLR,-304,287,201,124936232,124936824 +6 - chr8 124936687 124936800 chr8,124936687,124936822,-,MLT1G3,LTR,ERVL-MaLR,-458,137,1,124936229,124936822 +2 - chr8 124940349 124940369 chr8,124940103,124940620,-,LTR86A1,LTR,ERVL,-3,505,1,124940100,124940620 -1 - chr8 124941463 124941547 chr8,124941447,124941578,-,MIRc,SINE,MIR,-117,151,21,124941330,124941598 -3 - chr8 124942055 124942076 chr8,124941950,124942076,+,MLT1I,LTR,ERVL-MaLR,78,210,-201,124941873,124942277 +1 + chr8 124942173 124942304 chr8,124942173,124942304,+,AluSx,SINE,Alu,1,131,-181,124942173,124942485 +6 + chr8 124942396 124942415 chr8,124942396,124942415,+,(AGA)n,Simple_repeat,Simple_repeat,1,19,0,124942396,124942415 +6 + chr8 124942435 124942622 chr8,124942435,124942622,-,MIR,SINE,MIR,-29,233,58,124942406,124942679 -6 - chr8 124942673 124942724 chr8,124942673,124942826,-,MIRb,SINE,MIR,-48,214,52,124942625,124942877 -4 - chr8 124944039 124944566 chr8,124944039,124944566,+,L2a,LINE,L2,2788,3365,-61,124941252,124944627 +1 + chr8 124944778 124944895 chr8,124944778,124944895,-,MIRb,SINE,MIR,-79,189,60,124944699,124944954 -6 - chr8 124945397 124945520 chr8,124945397,124945520,+,MIR1_Amn,SINE,MIR,10,141,-89,124945388,124945609 +6 + chr8 124945996 124946030 chr8,124945849,124946030,+,MIRb,SINE,MIR,60,251,-17,124945790,124946047 +1 + chr8 124947543 124947656 chr8,124946510,124947656,+,L1M4b,LINE,L1,1503,2656,-4211,124945008,124951867 +2 + chr8 124947653 124947792 chr8,124947653,124947965,+,L1MEc,LINE,L1,345,675,-5725,124947309,124953690 +4 + chr8 124950816 124950986 chr8,124950685,124950986,+,MLT1H1,LTR,ERVL-MaLR,1,280,-311,124950685,124951297 +2 + chr8 124953940 124954028 chr8,124953809,124954028,-,MamRTE1,LINE,RTE-BovB,-791,3021,2785,124953018,124956812 -2 - chr8 124997132 124997160 chr8,124997132,124997214,-,MIR3,SINE,MIR,-90,118,37,124997042,124997250 +2 - chr8 124997964 124998053 chr8,124997964,124998053,+,L2c,LINE,L2,3300,3386,-1,124994665,124998054 -6 + chr8 125040684 125040779 chr8,125040488,125040858,+,THE1C,LTR,ERVL-MaLR,1,375,0,125040488,125040858 +1 + chr8 125348196 125348255 chr8,125348168,125348255,+,(TAA)n,Simple_repeat,Simple_repeat,1,88,0,125348168,125348255 -5 + chr8 125348493 125348861 chr8,125348493,125348861,+,THE1B,LTR,ERVL-MaLR,3,364,0,125348491,125348861 -6 + chr8 125473136 125473212 chr8,125473111,125473212,-,MIRb,SINE,MIR,-110,158,53,125473001,125473264 -2 - chr8 125522775 125523013 chr8,125522713,125523075,+,MLT1F2,LTR,ERVL-MaLR,137,502,-58,125522577,125523133 +1 + chr8 125529941 125530036 chr8,125529824,125530036,-,MIRb,SINE,MIR,-22,246,41,125529802,125530076 -2 - chr8 125529998 125530114 chr8,125529998,125530114,+,MIR3,SINE,MIR,23,143,-65,125529976,125530179 +6 + chr8 125530114 125530172 chr8,125530114,125530172,+,Plat_L3,LINE,CR1,3525,3582,-4,125526590,125530176 +6 + chr8 125530431 125530486 chr8,125530431,125530630,-,L1MB4,LINE,L1,-1,6179,5977,125530430,125536606 -5 - chr8 125749055 125749196 chr8,125749004,125749196,-,MLT1H1,LTR,ERVL-MaLR,0,591,374,125749004,125749569 +5 - chr8 125749266 125749348 chr8,125749266,125749409,-,MLT1H1,LTR,ERVL-MaLR,-220,371,228,125749046,125749636 +2 - chr8 125749900 125750117 chr8,125749864,125750117,-,L1MB3,LINE,L1,-16,6167,5910,125749848,125756026 +4 - chr8 125750117 125750241 chr8,125750117,125750579,+,MER51A,LTR,ERV1,1,634,0,125750117,125750579 -1 + chr8 125922308 125922547 chr8,125922215,125922574,+,L2c,LINE,L2,3022,3387,0,125919194,125922574 -5 + chr8 125936275 125936333 chr8,125936275,125936837,-,MER34A1,LTR,ERV1,0,587,26,125936275,125936862 +2 - chr8 125941541 125941946 chr8,125941541,125941946,-,L2b,LINE,L2,-344,3075,2655,125941197,125944600 +6 - chr8 125942190 125942570 chr8,125942190,125942570,+,MER92C,LTR,ERV1,220,590,0,125941971,125942570 -6 + chr8 125942573 125943935 chr8,125942573,125943935,+,MER92-int,LTR,ERV1,4,2033,-2903,125942570,125946838 -6 + chr8 125943935 125944428 chr8,125943935,125944428,+,MER31B,LTR,ERV1,1,463,-3,125943935,125944431 -6 + chr8 125944428 125944484 chr8,125944428,125944484,+,MER92-int,LTR,ERV1,1439,1480,-3738,125942990,125948222 -6 + chr8 125944484 125944775 chr8,125944484,125944775,+,AluSg,SINE,Alu,1,294,-16,125944484,125944791 -6 + chr8 125944775 125945502 chr8,125944775,125945502,+,MER92-int,LTR,ERV1,1481,2205,-3013,125943295,125948515 -6 + chr8 125945713 125945750 chr8,125945713,125945750,+,G-rich,Low_complexity,Low_complexity,1,37,0,125945713,125945750 -6 + chr8 125946056 125946182 chr8,125946056,125947708,-,MER92-int,LTR,ERV1,-95,5123,3428,125945961,125951135 +2 - chr8 125950914 125950962 chr8,125950854,125950962,-,MER92-int,LTR,ERV1,-4785,151,47,125946069,125951008 +4 - chr8 126000958 126001001 chr8,126000708,126001008,-,AluY,SINE,Alu,-10,301,1,126000698,126001008 +1 - chr8 126325495 126325557 chr8,126325276,126325639,+,THE1D,LTR,ERVL-MaLR,1,381,0,126325276,126325639 +1 + chr8 126328379 126328521 chr8,126328379,126328521,-,MER5A1,DNA,hAT-Charlie,-1,165,17,126328378,126328537 -6 - chr8 126328972 126329161 chr8,126328972,126329161,-,L2c,LINE,L2,-261,3126,2939,126328711,126332099 -6 - chr8 126329229 126329535 chr8,126329229,126329587,+,THE1B,LTR,ERVL-MaLR,1,364,0,126329229,126329587 +5 + chr8 126487547 126487630 chr8,126487319,126487681,+,THE1A,LTR,ERVL-MaLR,1,322,-33,126487319,126487714 +3 + chr8 126499877 126499990 chr8,126499819,126499990,+,LTR33B,LTR,ERVL,10,185,-318,126499810,126500308 +2 + chr8 126500163 126500303 chr8,126500163,126500331,+,LTR33B,LTR,ERVL,353,531,0,126499811,126500331 +5 + chr8 126518719 126518884 chr8,126518719,126519060,+,LTR78B,LTR,ERV1,758,1129,-167,126517962,126519227 +4 + chr8 126522324 126522347 chr8,126522324,126522347,+,(TAAA)n,Simple_repeat,Simple_repeat,1,24,0,126522324,126522347 +6 + chr8 126557171 126557184 chr8,126557171,126557195,+,(GGC)n,Simple_repeat,Simple_repeat,1,24,0,126557171,126557195 +4 + chr8 126617640 126617741 chr8,126617640,126617854,+,L3,LINE,CR1,3665,3900,-199,126613976,126618053 +5 + chr8 126634560 126634601 chr8,126634560,126634601,-,LTR88a,LTR,Gypsy?,-119,697,658,126634441,126635258 -6 - chr8 126666545 126666718 chr8,126666452,126666842,-,MSTB,LTR,ERVL-MaLR,0,426,46,126666452,126666887 -3 - chr8 126676352 126676406 chr8,126676041,126676406,+,THE1A,LTR,ERVL-MaLR,1,355,0,126676041,126676406 +2 + chr8 126707209 126707240 chr8,126707209,126707482,+,Arthur1,DNA,hAT-Tip100,1,266,-3681,126707209,126711163 +4 + chr8 126708918 126709147 chr8,126708588,126709174,+,LTR78,LTR,ERV1,237,866,-438,126708352,126709612 +3 + chr8 126713301 126713415 chr8,126713301,126713452,+,L3,LINE,CR1,3626,3776,-323,126709676,126713775 +5 + chr8 126769433 126769455 chr8,126769433,126769581,-,MER102c,DNA,hAT-Charlie,0,331,183,126769433,126769763 +2 - chr8 126790568 126790637 chr8,126790471,126790825,+,MLT1D,LTR,ERVL-MaLR,134,505,0,126790338,126790825 -1 + chr8 126877759 126877790 chr8,126877759,126877957,+,MIRb,SINE,MIR,8,233,-35,126877752,126877992 +4 + chr8 126878375 126878446 chr8,126878150,126878446,+,LTR16E2,LTR,ERVL,247,568,0,126877904,126878446 +2 + chr8 127013164 127013252 chr8,127013164,127013252,+,LTR78B,LTR,ERV1,389,486,-810,127012776,127014062 +6 + chr8 127013363 127013532 chr8,127013363,127013532,+,LTR78B,LTR,ERV1,628,815,-481,127012736,127014013 +6 + chr8 127019644 127020125 chr8,127019476,127020125,+,HSMAR1,DNA,TcMar-Mariner,9,656,-631,127019468,127020756 +2 + chr8 127020125 127020424 chr8,127020125,127020424,+,AluY,SINE,Alu,1,306,-5,127020125,127020429 +6 + chr8 127020424 127021014 chr8,127020424,127021070,+,HSMAR1,DNA,TcMar-Mariner,657,1286,-1,127019768,127021071 +5 + chr8 127072694 127072918 chr8,127071746,127072953,-,Charlie7,DNA,hAT-Charlie,-1221,1391,120,127070525,127073072 +5 - chr8 127078970 127079058 chr8,127077606,127079058,-,L1MA10,LINE,L1,-7,6327,4901,127077599,127083958 +4 - chr8 127079058 127079133 chr8,127079058,127079667,+,L1M2,LINE,L1,4276,4901,-1242,127074783,127080909 -2 + chr8 127082138 127082221 chr8,127082138,127082545,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,127082138,127082545 -1 + chr8 127185635 127185770 chr8,127185549,127185935,-,MLT1J1,LTR,ERVL-MaLR,-14,434,22,127185535,127185956 +5 - chr8 127188045 127188099 chr8,127187966,127188099,-,MIR,SINE,MIR,-94,174,29,127187872,127188127 +4 - chr8 127203163 127203222 chr8,127202263,127203320,+,L1ME3,LINE,L1,4151,5300,-846,127198113,127204166 -1 + chr8 127207933 127207959 chr8,127207933,127207959,-,MIRb,SINE,MIR,-38,230,207,127207895,127208165 +6 - chr8 127207959 127208493 chr8,127207959,127208493,-,MER1A,DNA,hAT-Charlie,0,529,1,127207959,127208493 +6 - chr8 127208493 127208671 chr8,127208493,127208671,-,MIR,SINE,MIR,-62,206,29,127208431,127208699 +6 - chr8 127209066 127209094 chr8,127209066,127209094,+,(TTG)n,Simple_repeat,Simple_repeat,1,30,0,127209066,127209094 -6 + chr8 127209096 127209282 chr8,127209096,127209282,-,AluSq,SINE,Alu,-47,266,82,127209049,127209363 +6 - chr8 127218810 127218864 chr8,127218788,127218864,-,MIR,SINE,MIR,-146,116,23,127218642,127218886 +4 - chr8 127289817 127290060 chr8,127289761,127290233,-,MLT1G1,LTR,ERVL-MaLR,0,579,95,127289761,127290327 +5 - chr8 127323015 127323154 chr8,127322262,127323874,+,MSTB-int,LTR,ERVL-MaLR,1,1651,0,127322262,127323874 -3 + chr8 127339274 127339397 chr8,127339225,127339397,-,LTR33,LTR,ERVL,-311,204,3,127338914,127339399 -1 - chr8 127339397 127339435 chr8,127339397,127340448,-,L2a,LINE,L2,-4,1901,725,127339393,127341172 -4 - chr8 127420829 127421005 chr8,127420739,127421005,-,MLT1J1,LTR,ERVL-MaLR,-1,443,174,127420738,127421178 +4 - chr8 127443350 127443362 chr8,127443309,127443362,+,(AATTA)n,Simple_repeat,Simple_repeat,1,50,0,127443309,127443362 -5 + chr8 127443493 127443720 chr8,127443493,127443859,+,MLT1I,LTR,ERVL-MaLR,4,408,-3,127443490,127443862 -2 + chr8 127480895 127480932 chr8,127480895,127480932,+,(ATTT)n,Simple_repeat,Simple_repeat,1,37,0,127480895,127480932 -6 + chr8 127481634 127481658 chr8,127481627,127481658,+,(TC)n,Simple_repeat,Simple_repeat,1,32,0,127481627,127481658 -4 + chr8 127481741 127482139 chr8,127481741,127482289,-,L2a,LINE,L2,0,3426,2856,127481741,127485144 +1 - chr8 127686343 127686429 chr8,127686319,127686429,-,MIR,SINE,MIR,-30,232,112,127686289,127686540 +5 - chr8 127686733 127686853 chr8,127686733,127686853,+,MIR,SINE,MIR,89,219,-43,127686645,127686896 -6 + chr8 127687155 127687191 chr8,127687155,127687191,+,(CATT)n,Simple_repeat,Simple_repeat,1,36,0,127687155,127687191 -6 + chr8 127687250 127687419 chr8,127687250,127687419,-,MIRb,SINE,MIR,-95,173,3,127687155,127687421 +6 - chr8 127687786 127688013 chr8,127687786,127688013,+,MIR,SINE,MIR,5,248,-14,127687782,127688027 -6 + chr8 127688504 127688746 chr8,127688504,127688746,+,MER102c,DNA,hAT-Charlie,72,321,-10,127688433,127688756 -6 + chr8 127688790 127688857 chr8,127688790,127688857,+,L2b,LINE,L2,3309,3375,0,127685482,127688857 -6 + chr8 127688924 127689065 chr8,127688924,127689065,+,L2b,LINE,L2,3034,3156,-219,127685891,127689284 -6 + chr8 127689114 127689423 chr8,127689114,127689616,-,MLT1F,LTR,ERVL-MaLR,-8,540,1,127689106,127689616 +2 - chr8 127691790 127691840 chr8,127691641,127691840,+,MIR,SINE,MIR,64,261,-1,127691578,127691841 -4 + chr8 127700608 127700839 chr8,127700506,127701029,-,MLT1F,LTR,ERVL-MaLR,0,548,1,127700506,127701029 +5 - chr8 127703050 127703243 chr8,127702880,127703304,-,L4_A_Mam,LINE,RTE-X,-6,4984,4569,127702874,127707872 +3 - chr8 127715947 127716168 chr8,127715928,127716189,+,AluJo,SINE,Alu,5,296,-16,127715924,127716205 -3 + chr8 127803150 127803428 chr8,127803117,127803428,-,AluY,SINE,Alu,-1,310,1,127803116,127803428 -2 - chr8 127939637 127939772 chr8,127939637,127939772,-,MIRb,SINE,MIR,-113,155,21,127939524,127939792 -5 - chr8 127940370 127940454 chr8,127940370,127940514,+,MIRc,SINE,MIR,12,173,-95,127940359,127940609 +5 + chr8 127946561 127946692 chr8,127946561,127946692,-,MIR,SINE,MIR,0,262,107,127946561,127946798 +6 - chr8 127946865 127946892 chr8,127946865,127946892,+,(CTCC)n,Simple_repeat,Simple_repeat,1,28,0,127946865,127946892 -5 + chr8 127947142 127947287 chr8,127947142,127947287,-,MIRb,SINE,MIR,-100,168,19,127947042,127947305 +6 - chr8 127947602 127947679 chr8,127947602,127947679,+,MIRb,SINE,MIR,42,125,-143,127947561,127947822 -6 + chr8 127947817 127947945 chr8,127947817,127947945,-,MIR,SINE,MIR,0,262,110,127947817,127948054 +6 - chr8 127948496 127948723 chr8,127948496,127948875,+,MLT1B,LTR,ERVL-MaLR,8,390,0,127948489,127948875 -1 + chr8 127983904 127984176 chr8,127983876,127984176,-,AluSz,SINE,Alu,-10,302,3,127983866,127984178 -2 - chr8 127984176 127984204 chr8,127984176,127984241,-,L1MC4,LINE,L1,-466,7576,7513,127983710,127991753 -4 - chr8 127998200 127998359 chr8,127997599,127998519,-,L1MC3,LINE,L1,-1,7784,6839,127997598,128005357 -3 - chr8 128070160 128070361 chr8,128069982,128070498,-,L1ME5,LINE,L1,-155,6039,5488,128069827,128075985 -5 - chr8 128082757 128082848 chr8,128082757,128083003,+,MLT1L,LTR,ERVL-MaLR,342,610,0,128082416,128083003 +4 + chr8 128099579 128099758 chr8,128099579,128099758,-,L1ME4a,LINE,L1,-18,6106,5945,128099561,128105702 -6 - chr8 128100980 128101253 chr8,128100639,128101309,+,LTR8A,LTR,ERV1,1,727,0,128100639,128101309 +5 + chr8 128405269 128405704 chr8,128405226,128405704,-,LTR16A2,LTR,ERVL,0,495,21,128405226,128405724 +5 - chr8 128405712 128406122 chr8,128405712,128406122,-,L2a,LINE,L2,-42,3384,2957,128405670,128409078 +6 - chr8 128406124 128406181 chr8,128406124,128406181,-,MLT1H,LTR,ERVL-MaLR,0,489,432,128406124,128406612 +6 - chr8 128406203 128406516 chr8,128406203,128406516,-,MLT1H,LTR,ERVL-MaLR,-185,364,1,128406018,128406516 +5 - chr8 128406584 128406633 chr8,128406584,128406783,-,LTR79,LTR,ERVL,0,527,311,128406584,128407093 +2 - chr8 128415366 128415381 chr8,128415090,128415709,+,L2a,LINE,L2,2778,3426,0,128412313,128415709 -1 + chr8 128420712 128420823 chr8,128420547,128420856,+,AluY,SINE,Alu,1,311,0,128420547,128420856 -5 + chr8 128422913 128422976 chr8,128422868,128422976,-,Tigger14a,DNA,TcMar-Tigger,-99,225,119,128422769,128423094 +4 - chr8 128559023 128559042 chr8,128558353,128559042,+,L1MA8,LINE,L1,5583,6290,-1,128552771,128559043 -5 + chr8 128559143 128559440 chr8,128559143,128559440,-,AluYa5,SINE,Alu,-14,297,1,128559129,128559440 +6 - chr8 128559714 128560014 chr8,128559712,128560014,-,AluSc8,SINE,Alu,-7,304,1,128559705,128560014 +5 - chr8 128560296 128560548 chr8,128560296,128560656,+,L2c,LINE,L2,3022,3386,-1,128557275,128560657 -2 + chr8 129216467 129216497 chr8,129216458,129216497,+,L2b,LINE,L2,3337,3375,0,129213122,129216497 -5 + chr8 129216771 129216902 chr8,129216771,129216902,-,L2b,LINE,L2,-118,3257,3140,129216653,129220041 +6 - chr8 129223286 129223369 chr8,129223286,129223456,+,L1MC3,LINE,L1,6255,6427,-1568,129217032,129225024 -2 + chr8 129351691 129352239 chr8,129351499,129352239,+,L1MEf,LINE,L1,3678,4462,-1857,129347822,129354096 -5 + chr8 129352316 129352519 chr8,129352316,129352519,-,MIRb,SINE,MIR,-1,267,71,129352315,129352589 +5 - chr8 129399514 129399619 chr8,129399255,129399619,-,THE1B,LTR,ERVL-MaLR,0,364,1,129399255,129399619 +4 - chr8 129399619 129399684 chr8,129399619,129399843,-,MLT1J2,LTR,ERVL-MaLR,-146,302,48,129399473,129399890 +2 - chr8 129574882 129575016 chr8,129574737,129575117,+,L2c,LINE,L2,2941,3341,-46,129571797,129575163 -1 + chr8 129679149 129679253 chr8,129679149,129679253,-,MIRc,SINE,MIR,-116,152,46,129679033,129679298 +6 - chr8 129683576 129683603 chr8,129683576,129683603,+,(TC)n,Simple_repeat,Simple_repeat,1,27,0,129683576,129683603 -6 + chr8 129832301 129832429 chr8,129832249,129832461,+,MLT1C,LTR,ERVL-MaLR,119,339,-128,129832131,129832589 +1 + chr8 129839900 129840006 chr8,129839889,129840006,-,L2c,LINE,L2,0,3375,3258,129839889,129843263 -2 - chr8 129843885 129843937 chr8,129843884,129843937,+,L2a,LINE,L2,3329,3421,-5,129840556,129843942 +2 + chr8 129890465 129890491 chr8,129890073,129890491,+,Tigger1,DNA,TcMar-Tigger,1832,2265,-153,129888242,129890644 +1 + chr8 129890610 129890655 chr8,129890610,129890923,+,AluSz6,SINE,Alu,1,312,0,129890610,129890923 +4 + chr8 129901483 129901512 chr8,129901226,129901512,-,AluSx,SINE,Alu,-18,294,1,129901208,129901512 -2 - chr8 129901602 129901758 chr8,129901602,129902109,+,Charlie4a,DNA,hAT-Charlie,3,508,0,129901600,129902109 +5 + chr8 129949261 129949394 chr8,129949261,129949475,-,MIR,SINE,MIR,-7,255,35,129949254,129949509 -5 - chr8 130595299 130595423 chr8,130595118,130595423,-,AluSz6,SINE,Alu,0,312,1,130595118,130595423 +5 - chr8 130595473 130595613 chr8,130595473,130595613,+,MIRc,SINE,MIR,7,151,-117,130595467,130595730 -6 + chr8 130599013 130599071 chr8,130599013,130599401,+,MLT1B,LTR,ERVL-MaLR,27,373,-17,130598987,130599418 -2 + chr8 130655559 130655633 chr8,130655467,130655633,-,MLT2B4,LTR,ERVL,-10,546,384,130655457,130656016 +4 - chr8 130655624 130655712 chr8,130655624,130655818,-,MLT2B4,LTR,ERVL,-361,195,1,130655263,130655818 +1 - chr8 130892070 130892414 chr8,130891748,130892434,+,LTR84a,LTR,ERVL,7,702,-55,130891742,130892489 -5 + chr8 130949566 130949665 chr8,130949566,130949701,+,L2c,LINE,L2,3029,3165,-222,130946538,130949923 +5 + chr8 131130388 131130665 chr8,131130210,131130665,+,LTR67B,LTR,ERVL,5,451,-169,131130206,131130834 -5 + chr8 131131076 131131091 chr8,131130872,131131091,-,MIRb,SINE,MIR,0,268,34,131130872,131131124 +4 - chr8 131308545 131308638 chr8,131308261,131308638,+,LTR7,LTR,ERV1,1,450,0,131308261,131308638 +1 + chr8 131308638 131308671 chr8,131308638,131308830,-,L1MCa,LINE,L1,-5063,1688,1527,131303575,131310356 -4 - chr8 131310472 131310564 chr8,131310174,131310564,+,LTR7,LTR,ERV1,1,448,-2,131310174,131310566 +1 + chr8 131310566 131310712 chr8,131310566,131313738,+,HERVH-int,LTR,ERV1,1,3290,-4423,131310566,131318161 +4 + chr8 131312556 131312748 chr8,131310566,131313738,+,HERVH-int,LTR,ERV1,1,3290,-4423,131310566,131318161 +3 + chr8 131315760 131315847 chr8,131315497,131315847,+,LTR7,LTR,ERV1,1,448,-2,131315497,131315849 +2 + chr8 131317381 131317399 chr8,131317381,131317399,+,(CAA)n,Simple_repeat,Simple_repeat,1,18,0,131317381,131317399 +6 + chr8 132560498 132560851 chr8,132560339,132560851,-,MER68,LTR,ERVL,-7,556,5,132560332,132560855 +5 - chr8 132826179 132826206 chr8,132826009,132826206,+,L1ME3E,LINE,L1,3617,3827,-2319,132822393,132828525 +1 + chr8 132826493 132826894 chr8,132826493,132826894,+,L1ME3E,LINE,L1,5809,6235,-7,132820685,132826901 +6 + chr8 133229056 133229265 chr8,133229023,133229265,-,MIRb,SINE,MIR,-5,263,19,133229018,133229283 -1 - chr8 133229594 133229697 chr8,133229594,133229697,+,L2b,LINE,L2,3273,3374,-1,133226322,133229698 +5 + chr8 133573183 133573318 chr8,133573055,133573318,+,MIR,SINE,MIR,5,254,-8,133573051,133573326 +1 + chr8 133771409 133771447 chr8,133771387,133771447,-,MER124,DNA?,DNA?,-109,288,229,133771278,133771675 -1 - chr8 133775551 133775565 chr8,133775378,133775565,+,MIR,SINE,MIR,8,205,-57,133775371,133775622 -5 + chr8 133775565 133775874 chr8,133775565,133775874,-,AluJo,SINE,Alu,-11,301,1,133775554,133775874 +6 - chr8 133775874 133775939 chr8,133775874,133775939,+,MIR,SINE,MIR,206,261,-1,133775669,133775940 -6 + chr8 133775982 133776132 chr8,133775982,133776132,-,MIRb,SINE,MIR,-92,176,18,133775890,133776149 +6 - chr8 133777039 133777115 chr8,133777039,133777243,-,MIRc,SINE,MIR,-40,228,16,133776999,133777258 +2 - chr8 133777299 133777342 chr8,133777263,133777342,-,L2a,LINE,L2,-1,3425,3339,133777262,133780680 +4 - chr8 133808682 133808784 chr8,133808675,133808817,-,L2,LINE,L2,-609,2810,2666,133808066,133811482 -3 - chr8 133814229 133814311 chr8,133814079,133814311,+,LTR16A,LTR,ERVL,216,451,0,133813864,133814311 +2 + chr8 133886496 133886540 chr8,133886478,133886619,+,MIRb,SINE,MIR,40,181,-87,133886439,133886706 +1 + chr8 133898169 133898216 chr8,133898169,133898431,+,LTR16A,LTR,ERVL,177,445,-6,133897993,133898437 +4 + chr8 133902263 133902407 chr8,133902263,133902448,+,MIRb,SINE,MIR,44,268,0,133902220,133902448 +5 + chr8 134212020 134212148 chr8,134212020,134212148,+,MIRc,SINE,MIR,10,140,-128,134212011,134212276 -6 + chr8 134212130 134212206 chr8,134212130,134212241,+,MIRb,SINE,MIR,59,174,-94,134212072,134212335 -2 + chr8 134320394 134320447 chr8,134320394,134320577,+,L2b,LINE,L2,3020,3194,-181,134317375,134320758 -1 + chr8 134598149 134598284 chr8,134598149,134598284,+,MIRb,SINE,MIR,56,191,-77,134598094,134598361 +6 + chr8 134722947 134723144 chr8,134722767,134723144,+,MLT1B,LTR,ERVL-MaLR,1,390,0,134722767,134723144 +1 + chr8 134723300 134723657 chr8,134723300,134723657,-,LTR33,LTR,ERVL,-5,510,116,134723295,134723772 -6 - chr8 134764893 134764994 chr8,134764893,134764994,+,L1M5,LINE,L1,5521,5621,-573,134759373,134765567 +6 + chr8 134765094 134765484 chr8,134765094,134765484,+,MER63B,DNA,hAT-Blackjack,28,431,-5,134765067,134765489 +6 + chr8 134765491 134765620 chr8,134765491,134765620,-,MIRb,SINE,MIR,-107,161,27,134765384,134765646 -6 - chr8 134766346 134766477 chr8,134766346,134766477,-,L1MC5,LINE,L1,-2,9302,9177,134766344,134775653 -6 - chr8 134766682 134766883 chr8,134766682,134766883,-,MIR,SINE,MIR,-58,204,4,134766624,134766886 -6 - chr8 134767099 134767276 chr8,134767099,134767486,-,L1MEg,LINE,L1,-3375,3862,3422,134763724,134770907 -5 - chr8 134783694 134784204 chr8,134783643,134784204,-,MER77,LTR,ERVL,-8,596,1,134783635,134784204 +5 - chr8 134784294 134784353 chr8,134784294,134784353,-,L1ME3Cz,LINE,L1,-531,466,408,134783763,134784760 +6 - chr8 134785073 134785207 chr8,134785073,134785207,-,L1ME3Cz,LINE,L1,-736,261,98,134784337,134785304 +6 - chr8 134785232 134785879 chr8,134785232,134786627,-,L1M5,LINE,L1,-862,5284,3787,134784370,134790413 +1 - chr8 134792623 134792716 chr8,134792623,134792716,-,MIRb,SINE,MIR,-20,248,144,134792603,134792859 +6 - chr8 134792723 134792829 chr8,134792723,134792829,-,MIRc,SINE,MIR,-149,119,11,134792574,134792839 +6 - chr8 134793136 134793398 chr8,134793136,134793398,-,L2c,LINE,L2,-1,3386,3106,134793135,134796503 +6 - chr8 134793400 134793441 chr8,134793400,134793441,-,MIRb,SINE,MIR,-15,253,221,134793385,134793661 +6 - chr8 134793441 134793750 chr8,134793441,134793750,-,MER1B,DNA,hAT-Charlie,0,339,1,134793441,134793750 +6 - chr8 134793750 134793828 chr8,134793750,134793828,-,MIRb,SINE,MIR,-48,220,136,134793702,134793963 +6 - chr8 134794874 134795091 chr8,134794874,134795091,-,MIRb,SINE,MIR,-3,265,37,134794871,134795127 +6 - chr8 134795099 134795371 chr8,134795099,134795371,+,MER21B,LTR,ERVL,1,287,-581,134795099,134795952 -6 + chr8 134795375 134795964 chr8,134795375,134795964,-,LTR48B,LTR,ERV1,0,707,2,134795375,134795965 +6 - chr8 134795964 134796524 chr8,134795964,134796524,+,MER21B,LTR,ERVL,288,863,-5,134795677,134796529 -6 + chr8 134832830 134833037 chr8,134832830,134833037,+,MIRb,SINE,MIR,39,267,-1,134832792,134833038 +6 + chr8 134833050 134833171 chr8,134833050,134833171,-,MIRb,SINE,MIR,-115,153,35,134832935,134833205 -6 - chr8 134842260 134842318 chr8,134842260,134842593,+,MLT1I,LTR,ERVL-MaLR,74,411,0,134842187,134842593 +4 + chr8 134842454 134842593 chr8,134842260,134842593,+,MLT1I,LTR,ERVL-MaLR,74,411,0,134842187,134842593 +2 + chr8 134849935 134850068 chr8,134849924,134850068,-,MER5A,DNA,hAT-Charlie,0,189,39,134849924,134850106 -1 - chr8 134850082 134850495 chr8,134850082,134850495,-,MLT1J,LTR,ERVL-MaLR,-45,467,39,134850037,134850533 -6 - chr8 134850609 134850786 chr8,134850609,134850786,-,MIRb,SINE,MIR,-70,198,8,134850539,134850793 -6 - chr8 134851207 134851325 chr8,134851207,134851325,+,MIR3,SINE,MIR,15,131,-77,134851193,134851402 +6 + chr8 134851611 134851630 chr8,134851611,134851798,-,MER127,DNA,TcMar-Tigger,-126,238,41,134851485,134851838 -4 - chr8 134881184 134881280 chr8,134880977,134881346,+,MLT1A0,LTR,ERVL-MaLR,1,361,-4,134880977,134881350 +3 + chr8 135234131 135234155 chr8,135234049,135234155,+,(CTCC)n,Simple_repeat,Simple_repeat,1,107,0,135234049,135234155 +1 + chr8 135288096 135288112 chr8,135288019,135288295,-,MLT1I,LTR,ERVL-MaLR,-16,395,99,135288003,135288393 -3 - chr8 135291176 135291347 chr8,135290993,135291347,-,MLT1K,LTR,ERVL-MaLR,-12,583,234,135290981,135291580 -2 - chr8 135296497 135296702 chr8,135296440,135296702,+,L1ME2,LINE,L1,128,395,-6092,135296313,135302794 +5 + chr8 135299427 135299455 chr8,135299395,135299455,-,MIRb,SINE,MIR,-196,72,9,135299199,135299463 -2 - chr8 135299675 135299719 chr8,135299675,135300078,-,MLT1F,LTR,ERVL-MaLR,0,548,86,135299675,135300163 -5 - chr8 135455865 135456006 chr8,135455784,135456006,-,MIR,SINE,MIR,-21,241,6,135455763,135456011 +5 - chr8 135456478 135456536 chr8,135456282,135456536,-,L2b,LINE,L2,0,3375,3111,135456282,135459646 +4 - chr8 136047021 136047205 chr8,136046962,136047288,+,MLT2D,LTR,ERVL,91,414,0,136046872,136047288 +1 + chr8 136089182 136089206 chr8,136089182,136089341,+,L2b,LINE,L2,3212,3375,0,136085971,136089341 +4 + chr8 136165222 136165343 chr8,136165083,136165464,+,MLT1J1,LTR,ERVL-MaLR,73,440,-4,136165011,136165468 +3 + chr8 136165934 136166092 chr8,136165797,136166092,-,MLT1E1,LTR,ERVL-MaLR,0,654,249,136165797,136166340 -5 - chr8 136166060 136166122 chr8,136166060,136166256,-,MLT1E1,LTR,ERVL-MaLR,-308,346,130,136165752,136166385 -5 - chr8 136489448 136489502 chr8,136489231,136489726,+,MER61F,LTR,ERV1,130,639,-37,136489102,136489763 +1 + chr8 136519148 136519239 chr8,136518885,136519604,-,L1MCc,LINE,L1,-5488,1640,822,136513397,136520425 -3 - chr8 136530798 136530974 chr8,136530234,136530974,-,LTR12C,LTR,ERV1,-831,748,2,136529403,136530975 -1 - chr8 136530975 136531006 chr8,136530975,136531272,-,ERVL-E-int,LTR,ERVL,-2064,3603,3304,136528911,136534575 -4 - chr8 136780944 136781178 chr8,136780944,136783321,+,L1MA5A,LINE,L1,1816,4273,-3289,136779129,136786610 +4 + chr8 136797273 136797370 chr8,136797071,136797452,+,MSTA,LTR,ERVL-MaLR,1,428,0,136797071,136797452 +1 + chr8 136798145 136798234 chr8,136798145,136798316,+,L2c,LINE,L2,3019,3194,-193,136795127,136798509 +5 + chr8 136809946 136810037 chr8,136809946,136810123,-,UCON18,Unknown,Unknown,-67,488,306,136809879,136810428 -5 - chr8 136815131 136815161 chr8,136815057,136815161,-,MIRb,SINE,MIR,-114,154,50,136814943,136815210 -2 - chr8 136815186 136815688 chr8,136815186,136815711,+,MER90a,LTR,ERV1,62,596,-18,136815125,136815729 +5 + chr8 136897433 136897601 chr8,136897321,136897647,+,MLT1A0,LTR,ERVL-MaLR,1,365,0,136897321,136897647 +5 + chr8 136961740 136961752 chr8,136961354,136961752,+,LTR16A,LTR,ERVL,22,446,-5,136961333,136961757 +2 + chr8 136961772 136961851 chr8,136961772,136961909,+,HERV16-int,LTR,ERVL,17,163,-4833,136961756,136966742 +4 + chr8 137809833 137809905 chr8,137809833,137809905,+,(TATC)n,Simple_repeat,Simple_repeat,1,75,0,137809833,137809905 -6 + chr8 137809943 137810116 chr8,137809943,137810116,+,MIRc,SINE,MIR,63,251,-17,137809881,137810133 -6 + chr8 137810254 137810395 chr8,137810254,137810395,-,MIR,SINE,MIR,-19,243,91,137810235,137810485 +6 - chr8 137811259 137811314 chr8,137811259,137811314,+,(TA)n,Simple_repeat,Simple_repeat,1,59,0,137811259,137811314 -6 + chr8 137811593 137811812 chr8,137811593,137811812,-,MIRc,SINE,MIR,-5,263,19,137811588,137811830 +6 - chr8 137812099 137812224 chr8,137812099,137812224,+,L3,LINE,CR1,3752,3887,-212,137808348,137812436 -6 + chr8 137812440 137812605 chr8,137812440,137812605,-,L1MA8,LINE,L1,0,6291,6117,137812440,137818721 +6 - chr8 137812613 137812635 chr8,137812613,137812635,-,L1MA8,LINE,L1,-158,6142,6122,137812455,137818756 +6 - chr8 137812635 137812934 chr8,137812635,137812950,-,L1PA7,LINE,L1,-13,6141,5827,137812622,137818776 +2 - chr8 137857085 137857119 chr8,137857085,137857279,+,MER3,DNA,hAT-Charlie,1,183,-26,137857085,137857305 +4 + chr8 137928681 137928802 chr8,137928578,137928802,-,MIR,SINE,MIR,-21,241,10,137928557,137928811 -2 - chr8 137928802 137928995 chr8,137928802,137928995,+,MER5A,DNA,hAT-Charlie,1,189,0,137928802,137928995 +6 + chr8 137928995 137929006 chr8,137928995,137929006,-,MIR,SINE,MIR,-253,9,1,137928742,137929006 -6 - chr8 138063268 138063343 chr8,138063033,138063343,-,AluSx,SINE,Alu,-6,306,1,138063027,138063343 -1 - chr8 138063444 138063523 chr8,138063444,138063612,-,L2,LINE,L2,-449,2970,2799,138062995,138066410 -4 - chr8 138072901 138073215 chr8,138072208,138073215,+,L1PA16,LINE,L1,5137,6157,-9,138067072,138073224 +2 + chr8 139114193 139114513 chr8,139114056,139114513,-,L1M2,LINE,L1,-932,5211,4683,139113124,139119195 +5 - chr8 139121453 139121522 chr8,139121453,139121558,+,LTR33A,LTR,ERVL,77,183,-337,139121377,139121895 -2 + chr8 139127877 139127953 chr8,139124440,139129844,-,ERVL-B4-int,LTR,ERVL,0,5714,63,139124440,139129906 +1 - chr8 139460062 139460873 chr8,139459905,139460873,-,LTR5_Hs,LTR,ERVK,0,968,1,139459905,139460873 +5 - chr8 139460873 139460967 chr8,139460873,139460968,-,SVA_F,Retroposon,SVA,-450,925,846,139460423,139461813 +2 - chr8 139462886 139462993 chr8,139461715,139462993,-,HERVK-int,LTR,ERVK,-6258,1278,1,139455457,139462993 +4 - chr8 139911238 139911300 chr8,139911039,139911384,+,THE1B,LTR,ERVL-MaLR,1,364,0,139911039,139911384 +1 + chr8 139931172 139931205 chr8,139931105,139931205,+,MIRb,SINE,MIR,58,159,-109,139931048,139931314 +1 + chr8 139931256 139931328 chr8,139931256,139931328,-,MIRb,SINE,MIR,-74,194,123,139931182,139931450 -6 - chr8 139931498 139931554 chr8,139931498,139931554,-,MIR3,SINE,MIR,-35,173,112,139931463,139931665 -6 - chr8 139932284 139932482 chr8,139932284,139932482,+,MLT1I,LTR,ERVL-MaLR,57,282,-129,139932228,139932611 +6 + chr8 139932482 139932775 chr8,139932482,139932775,+,AluSx,SINE,Alu,3,294,-18,139932480,139932793 +6 + chr8 139932775 139932904 chr8,139932775,139932904,+,MLT1I,LTR,ERVL-MaLR,283,393,-18,139932493,139932922 +6 + chr8 139932905 139932922 chr8,139932905,139932922,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,139932905,139932922 +6 + chr8 139933803 139933943 chr8,139933803,139933943,+,MIRb,SINE,MIR,63,217,-51,139933741,139933994 +5 + chr8 140505846 140505888 chr8,140505846,140505888,+,(ACATT)n,Simple_repeat,Simple_repeat,1,42,0,140505846,140505888 -6 + chr8 140505905 140506063 chr8,140505905,140506063,-,AluJr,SINE,Alu,-18,294,138,140505887,140506200 +6 - chr8 140506063 140506360 chr8,140506063,140506360,-,AluSx1,SINE,Alu,-17,295,1,140506046,140506360 +6 - chr8 140506361 140506656 chr8,140506361,140506656,-,AluSz,SINE,Alu,-16,296,1,140506345,140506656 +6 - chr8 140506656 140506669 chr8,140506656,140506669,-,AluJr,SINE,Alu,-175,137,136,140506481,140506804 +6 - chr8 140506669 140506957 chr8,140506669,140506957,-,AluSg,SINE,Alu,-22,288,1,140506647,140506957 +6 - chr8 140506957 140507178 chr8,140506957,140507178,-,AluJr,SINE,Alu,-177,135,2,140506780,140507179 +6 - chr8 140507388 140507598 chr8,140507388,140507598,-,LTR33A_,LTR,ERVL,-239,264,61,140507149,140507658 +6 - chr8 140507766 140507914 chr8,140507766,140507914,-,FLAM_C,SINE,Alu,-82,220,12,140507684,140507925 +6 - chr8 140521021 140521051 chr8,140521021,140521051,+,(CAAAA)n,Simple_repeat,Simple_repeat,1,31,0,140521021,140521051 -6 + chr8 140522531 140522564 chr8,140522531,140522564,+,(A)n,Simple_repeat,Simple_repeat,1,33,0,140522531,140522564 -6 + chr8 140522666 140522749 chr8,140522666,140522749,+,(AG)n,Simple_repeat,Simple_repeat,1,84,0,140522666,140522749 -6 + chr8 140523395 140523434 chr8,140523395,140523434,+,A-rich,Low_complexity,Low_complexity,1,40,0,140523395,140523434 -6 + chr8 140528352 140528384 chr8,140528352,140528384,+,A-rich,Low_complexity,Low_complexity,1,32,0,140528352,140528384 -6 + chr8 140572356 140572472 chr8,140572356,140572472,-,FRAM,SINE,Alu,-20,156,42,140572336,140572513 +6 - chr8 140591837 140592134 chr8,140591837,140592134,+,AluSq2,SINE,Alu,1,297,-16,140591837,140592150 +6 + chr8 140592382 140592460 chr8,140592382,140592460,+,L2c,LINE,L2,3240,3317,-70,140589143,140592530 +6 + chr8 140592661 140592795 chr8,140592661,140592795,-,AluJr,SINE,Alu,-180,132,1,140592481,140592795 -6 - chr8 140592894 140593007 chr8,140592894,140593007,-,MIRc,SINE,MIR,-115,153,37,140592779,140593043 -6 - chr8 140820599 140820818 chr8,140820400,140820818,-,L2,LINE,L2,-604,2815,2353,140819796,140823170 +5 - chr8 140820986 140821220 chr8,140820986,140821220,-,L2,LINE,L2,-2358,1061,805,140818628,140822024 +6 - chr8 140821224 140821712 chr8,140821224,140821712,-,L2,LINE,L2,-597,2822,2240,140820627,140823951 +6 - chr8 140821725 140821836 chr8,140821725,140821836,-,L2,LINE,L2,-2178,1241,1121,140819547,140822956 +6 - chr8 140822190 140822273 chr8,140822190,140822273,-,L2c,LINE,L2,-32,3355,3274,140822158,140825546 +6 - chr8 140822350 140822385 chr8,140822350,140822385,+,(CA)n,Simple_repeat,Simple_repeat,1,35,0,140822350,140822385 -6 + chr8 141057264 141057339 chr8,141057264,141057339,+,MER5B,DNA,hAT-Charlie,20,97,-81,141057245,141057420 +6 + chr8 141058453 141058506 chr8,141058377,141058506,+,MIRb,SINE,MIR,102,228,-40,141058276,141058546 +2 + chr8 141059978 141060316 chr8,141059904,141060316,-,MLT1C,LTR,ERVL-MaLR,-2,465,5,141059902,141060320 -2 - chr8 141060538 141060596 chr8,141060538,141060658,+,MER5B,DNA,hAT-Charlie,32,166,-12,141060507,141060670 +5 + chr8 141126044 141126063 chr8,141125960,141126063,-,L1MB5,LINE,L1,-8,6166,6052,141125952,141132114 +5 - chr8 141126063 141126198 chr8,141126063,141126198,-,MIRc,SINE,MIR,-35,233,77,141126028,141126274 +6 - chr8 141224288 141224445 chr8,141223912,141224445,-,L1MEf,LINE,L1,-4551,1649,1141,141219361,141225585 +5 - chr8 141224445 141224751 chr8,141224445,141224751,-,AluSz6,SINE,Alu,-6,306,1,141224439,141224751 +6 - chr8 141224751 141225287 chr8,141224751,141225287,-,L1MEf,LINE,L1,-5060,1140,568,141219691,141225854 +6 - chr8 141225328 141225499 chr8,141225328,141225499,-,L1MEf,LINE,L1,-5764,330,154,141219564,141225652 +6 - chr8 141326964 141327137 chr8,141326816,141327177,+,MLT1B,LTR,ERVL-MaLR,1,380,-10,141326816,141327187 +5 + chr8 141340549 141340672 chr8,141340243,141340799,-,MER4B,LTR,ERV1,-37,573,1,141340206,141340799 -1 - chr8 141342325 141342476 chr8,141342250,141342485,-,L1MB5,LINE,L1,-206,5968,5709,141342044,141348193 -1 - chr8 141344344 141344619 chr8,141344274,141344619,+,L2c,LINE,L2,2957,3381,-6,141341318,141344625 +2 + chr8 141344597 141344621 chr8,141344597,141344809,-,MIRb,SINE,MIR,-17,251,49,141344580,141344857 -5 - chr8 141353997 141354081 chr8,141353997,141354081,-,MamTip2,DNA,hAT-Tip100,-125,180,94,141353872,141354174 +6 - chr8 141354288 141354354 chr8,141354288,141354354,+,GA-rich,Low_complexity,Low_complexity,1,67,0,141354288,141354354 -6 + chr8 141355251 141355365 chr8,141355251,141355365,+,MIRc,SINE,MIR,30,152,-116,141355222,141355481 -1 + chr8 141389939 141390212 chr8,141389916,141390212,-,AluJb,SINE,Alu,-8,304,1,141389908,141390212 +5 - chr8 141390258 141390324 chr8,141390258,141390324,+,L3,LINE,CR1,3925,3990,-109,141386334,141390433 -6 + chr8 141390450 141390574 chr8,141390450,141390574,+,MIR,SINE,MIR,61,196,-66,141390390,141390640 -6 + chr8 141390686 141390741 chr8,141390686,141390741,-,L2a,LINE,L2,-19,3356,3297,141390667,141394037 +6 - chr8 141390813 141391151 chr8,141390813,141391211,-,L2a,LINE,L2,-255,3171,2735,141390558,141393945 +2 - chr8 141435579 141435668 chr8,141435579,141435668,-,L2b,LINE,L2,-8,3367,3274,141435571,141438941 -6 - chr8 141437382 141437520 chr8,141437382,141437675,-,AluJo,SINE,Alu,-17,295,2,141437365,141437676 -4 - chr8 142089827 142090451 chr8,142089420,142090451,+,ERV3-16A3_I-int,LTR,ERVL,3961,5050,-176,142085460,142090627 +1 + chr8 142090593 142090680 chr8,142090593,142090680,-,MIR3,SINE,MIR,-11,197,116,142090582,142090795 -6 - chr8 142090651 142090878 chr8,142090651,142090878,+,MIR,SINE,MIR,21,256,-6,142090631,142090884 +6 + chr8 142090879 142091001 chr8,142090879,142091001,-,MIR3,SINE,MIR,-103,165,36,142090776,142091036 -6 - chr8 142208262 142208371 chr8,142208262,142208371,+,ERVL-E-int,LTR,ERVL,4795,4916,-751,142203468,142209122 +6 + chr8 142208631 142208675 chr8,142208631,142208675,+,MLT1G3,LTR,ERVL-MaLR,57,100,-495,142208575,142209170 +6 + chr8 142208675 142209003 chr8,142208675,142209052,+,MSTD,LTR,ERVL-MaLR,1,396,0,142208675,142209052 +5 + chr8 142403693 142403758 chr8,142403693,142403758,-,MIRc,SINE,MIR,-118,150,88,142403575,142403845 -6 - chr8 142405685 142405715 chr8,142405685,142405715,+,(CCCT)n,Simple_repeat,Simple_repeat,1,30,0,142405685,142405715 +6 + chr8 142406994 142407024 chr8,142406994,142407024,+,A-rich,Low_complexity,Low_complexity,1,30,0,142406994,142407024 +6 + chr8 142620756 142620904 chr8,142620756,142620904,+,MIR3,SINE,MIR,28,183,-25,142620729,142620929 +6 + chr8 142640485 142640507 chr8,142640485,142640507,+,(AG)n,Simple_repeat,Simple_repeat,1,22,0,142640485,142640507 +6 + chr8 142704141 142705432 chr8,142704141,142705432,-,HSMAR2,DNA,TcMar-Mariner,0,1302,2,142704141,142705433 +6 - chr8 142705906 142706604 chr8,142705906,142706604,-,L2,LINE,L2,-1237,2182,1443,142704669,142708046 +6 - chr8 142707123 142707244 chr8,142707123,142707244,-,MLT1A0,LTR,ERVL-MaLR,-7,505,388,142707116,142707631 +6 - chr8 142708315 142708418 chr8,142708257,142708505,-,MLT1A0,LTR,ERVL-MaLR,-21,344,90,142708236,142708594 +3 - chr8 142727284 142727345 chr8,142727284,142727345,+,(CGCCGC)n,Simple_repeat,Simple_repeat,1,61,0,142727284,142727345 -6 + chr8 142766138 142766427 chr8,142765992,142766460,+,LTR15,LTR,ERV1,32,487,-6,142765961,142766466 +5 + chr8 142811735 142811805 chr8,142811664,142811805,+,L1MC3,LINE,L1,6689,6824,-961,142804976,142812766 +2 + chr8 142811806 142812107 chr8,142811806,142812107,-,AluY,SINE,Alu,-10,301,1,142811796,142812107 -6 - chr8 142834138 142834159 chr8,142834020,142834159,+,MER65C,LTR,ERV1,325,461,0,142833696,142834159 -5 + chr8 142834694 142834732 chr8,142834694,142834732,+,(GGCCTGGA)n,Simple_repeat,Simple_repeat,1,42,0,142834694,142834732 -6 + chr8 142981738 142982025 chr8,142981672,142982025,-,L1MEg,LINE,L1,-4624,1618,1279,142977048,142983303 +5 - chr8 142994876 142994959 chr8,142994476,142994959,-,LTR8A,LTR,ERV1,0,727,241,142994476,142995199 +5 - chr8 142994959 142995186 chr8,142994959,142995186,-,AluSz,SINE,Alu,-89,223,1,142994870,142995186 +6 - chr8 142995195 142995657 chr8,142995195,142995828,-,HERV35I-int,LTR,ERV1,-821,6097,5432,142994374,143001259 +2 - chr8 143007753 143008279 chr8,143005317,143008279,-,L1PA13,LINE,L1,-2708,4058,1050,143002609,143009328 +5 - chr8 143008302 143009207 chr8,143008302,143009280,-,L1PA13,LINE,L1,-5788,997,14,143002514,143009293 +2 - chr8 143012538 143012577 chr8,143012538,143012710,+,MER4CL34,LTR,ERV1,4,149,-316,143012535,143013026 -1 + chr8 143016881 143016954 chr8,143016881,143016954,+,MER21A,LTR,ERVL,638,710,-221,143016244,143017175 -6 + chr8 143016954 143016987 chr8,143016954,143016987,+,(TG)n,Simple_repeat,Simple_repeat,1,33,0,143016954,143016987 -6 + chr8 143016987 143017146 chr8,143016987,143017196,+,MER21A,LTR,ERVL,673,930,-1,143016315,143017197 -2 + chr8 143018268 143018403 chr8,143018268,143018403,+,MIR3,SINE,MIR,25,158,-50,143018244,143018453 -1 + chr8 143280202 143280316 chr8,143280202,143280316,+,MIR,SINE,MIR,3,139,-123,143280200,143280439 -6 + chr8 143280319 143280688 chr8,143280319,143280688,-,MLT2D,LTR,ERVL,0,414,69,143280319,143280756 +6 - chr8 143280919 143280997 chr8,143280919,143281026,+,L2b,LINE,L2,3265,3373,-2,143277655,143281028 -2 + chr8 143281227 143281384 chr8,143281227,143281417,-,LTR50,LTR,ERVL,-6,789,564,143281221,143281980 +1 - chr8 143281608 143281690 chr8,143281608,143281836,-,LTR50,LTR,ERVL,-509,286,67,143281099,143281902 +1 - chr8 143366631 143366643 chr8,143366587,143366643,+,AluSq2,SINE,Alu,247,302,-11,143366341,143366654 -5 + chr8 143367058 143367205 chr8,143367058,143367205,-,L2c,LINE,L2,-223,3164,3021,143366835,143370225 +6 - chr8 143367208 143367499 chr8,143367208,143367499,+,AluJb,SINE,Alu,2,286,-26,143367207,143367525 -6 + chr8 143413437 143413482 chr8,143413437,143413619,-,MIR,SINE,MIR,-55,207,7,143413382,143413625 -4 - chr8 143416910 143416943 chr8,143416791,143416943,+,HAL1,LINE,L1,2346,2505,-2,143414446,143416945 +2 + chr8 143417694 143417919 chr8,143417694,143418011,-,L2b,LINE,L2,-1,3374,3070,143417693,143421080 -4 - chr8 143542020 143542109 chr8,143542020,143542109,+,L1MB3,LINE,L1,5523,5615,-568,143536498,143542677 -6 + chr8 143542110 143542398 chr8,143542109,143542398,+,7SK,RNA,RNA,1,328,-3,143542109,143542401 +1 + chr8 143542109 143542396 chr8,143542109,143542398,+,7SK,RNA,RNA,1,328,-3,143542109,143542401 -1 + chr8 143573490 143573566 chr8,143573344,143573697,+,MSTA,LTR,ERVL-MaLR,9,428,0,143573336,143573697 +1 + chr8 143582669 143582707 chr8,143582669,143582707,+,(GGCCACA)n,Simple_repeat,Simple_repeat,1,38,0,143582669,143582707 +6 + chr8 143582988 143583304 chr8,143582988,143583334,+,MLT1B,LTR,ERVL-MaLR,1,373,-17,143582988,143583351 +5 + chr8 143632071 143632226 chr8,143631948,143632226,-,AluSp,SINE,Alu,-10,303,2,143631938,143632227 +5 - chr8 143633450 143633466 chr8,143633317,143633466,+,MIR,SINE,MIR,25,179,-83,143633293,143633549 -4 + chr8 143633503 143633756 chr8,143633503,143633804,-,LTR16A,LTR,ERVL,-67,384,1,143633436,143633804 +1 - chr8 143696327 143696456 chr8,143696327,143696456,+,L1MC5a,LINE,L1,2557,2700,-77,143693771,143696533 +6 + chr8 143696556 143696863 chr8,143696556,143696863,-,MLT1A0,LTR,ERVL-MaLR,-15,350,1,143696541,143696863 -6 - chr8 143697997 143698165 chr8,143697997,143698165,+,AluSx1,SINE,Alu,127,294,-18,143697871,143698183 +6 + chr8 143709007 143709169 chr8,143709007,143709573,+,LTR26,LTR,ERV1,1,601,-2,143709007,143709575 -5 + chr8 143739475 143739503 chr8,143739475,143739537,+,G-rich,Low_complexity,Low_complexity,1,64,0,143739475,143739537 +4 + chr8 143743860 143744130 chr8,143743837,143744130,-,AluSc,SINE,Alu,-11,298,2,143743826,143744131 -2 - chr8 143744133 143744333 chr8,143744133,143744333,-,MLT1E2,LTR,ERVL-MaLR,-440,187,3,143743693,143744335 -6 - chr8 143744355 143745215 chr8,143744355,143745215,-,ERVL-B4-int,LTR,ERVL,-3085,2629,1719,143741270,143746933 -6 - chr8 143745291 143745392 chr8,143745291,143745392,-,ERVL-B4-int,LTR,ERVL,-4253,1414,1313,143741038,143746704 -6 - chr8 143745416 143745719 chr8,143745416,143745719,-,AluSx,SINE,Alu,-6,306,1,143745410,143745719 -6 - chr8 143745730 143746048 chr8,143745730,143746048,-,AluJr,SINE,Alu,-11,301,1,143745719,143746048 -6 - chr8 143746049 143746337 chr8,143746049,143746351,-,L1M4,LINE,L1,-1890,4250,3948,143744159,143750298 -5 - chr8 143758188 143758489 chr8,143758188,143758489,+,AluSp,SINE,Alu,7,309,-4,143758182,143758493 -6 + chr8 143759511 143759806 chr8,143759511,143760187,-,ERVL-E-int,LTR,ERVL,-3178,2489,1792,143756333,143761978 +2 - chr8 143760399 143760508 chr8,143760399,143760699,+,AluJb,SINE,Alu,7,300,-12,143760393,143760711 -2 + chr8 143833270 143833330 chr8,143832957,143833330,+,HAL1,LINE,L1,1636,2079,-428,143831322,143833758 -5 + chr8 143833465 143833485 chr8,143833465,143833582,+,HAL1,LINE,L1,2270,2379,-128,143831196,143833710 -2 + chr8 143833964 143834026 chr8,143833700,143834026,+,MamRep1151,LTR?,LTR?,58,368,-341,143833643,143834367 -4 + chr8 143834026 143834063 chr8,143834026,143834590,+,MLT1E2,LTR,ERVL-MaLR,1,627,0,143834026,143834590 -1 + chr8 144049129 144049203 chr8,144049128,144049203,+,(CCCCGGC)n,Simple_repeat,Simple_repeat,1,68,0,144049128,144049203 +1 + chr8 144049272 144049320 chr8,144049272,144049320,+,(GGC)n,Simple_repeat,Simple_repeat,1,49,0,144049272,144049320 +6 + chr8 144078002 144078060 chr8,144077541,144078060,+,MLT1G3,LTR,ERVL-MaLR,34,576,-3,144077508,144078063 -5 + chr8 144079154 144079265 chr8,144079154,144079438,+,L2a,LINE,L2,3097,3426,0,144076058,144079438 -1 + chr8 144437675 144437746 chr8,144437602,144437905,-,AluSx,SINE,Alu,-11,301,1,144437591,144437905 -1 - chr8 144438228 144438333 chr8,144438205,144438356,-,AluJb,SINE,Alu,-18,294,134,144438187,144438489 -3 - chr8 144439948 144439971 chr8,144439948,144439992,+,(CAGCC)n,Simple_repeat,Simple_repeat,1,44,0,144439948,144439992 +5 + chr8 144495458 144495481 chr8,144495427,144495735,-,AluYm1,SINE,Alu,0,311,1,144495427,144495735 +5 - chr8 144495618 144495735 chr8,144495427,144495735,-,AluYm1,SINE,Alu,0,311,1,144495427,144495735 +5 - chr8 144496514 144496570 chr8,144496514,144496570,+,(CCTGGTGC)n,Simple_repeat,Simple_repeat,1,60,0,144496514,144496570 -6 + chr8 144496570 144496587 chr8,144496570,144496587,+,G-rich,Low_complexity,Low_complexity,1,73,0,144496570,144496587 -6 + chr8 144498653 144498744 chr8,144498653,144498744,-,L3b,LINE,CR1,-871,4361,4266,144497782,144503009 +6 - chr8 144584156 144584207 chr8,144584156,144584306,+,AluJb,SINE,Alu,1,150,-162,144584156,144584468 +4 + chr8 144586259 144586280 chr8,144585983,144586280,-,AluSz,SINE,Alu,-17,295,1,144585966,144586280 -2 - chr8 144698614 144698696 chr8,144698426,144698696,-,L1ME3Cz,LINE,L1,-2484,3662,3380,144695942,144702075 +5 - chr8 144714120 144714215 chr8,144714120,144714215,-,LTR16D2,LTR,ERVL,-11,561,463,144714109,144714677 -6 - chr8 144714519 144714845 chr8,144714519,144714929,-,L1M4,LINE,L1,-568,5610,5206,144713951,144720134 -5 - chr8 145003626 145003769 chr8,145003626,145003769,-,AluJb,SINE,Alu,-18,294,119,145003608,145003887 -6 - chr8 145003791 145004062 chr8,145003791,145004062,-,AluJb,SINE,Alu,-30,282,1,145003761,145004062 -6 - chr8 145004104 145004458 chr8,145004104,145004458,+,MER67C,LTR,ERV1,59,421,-290,145004046,145004748 +6 + chr8 145005173 145005225 chr8,145005173,145005225,+,(TATTT)n,Simple_repeat,Simple_repeat,1,54,0,145005173,145005225 +6 + chr9 27945 28127 chr9,27945,28127,-,MIRb,SINE,MIR,-70,198,1,27875,28127 -6 - chr9 28263 28415 chr9,28263,28415,-,MIR,SINE,MIR,-8,254,99,28255,28513 -6 - chr9 29522 29570 chr9,29522,29570,+,(ACGCCC)n,Simple_repeat,Simple_repeat,1,50,0,29522,29570 +6 + chr9 29679 29976 chr9,29679,29976,+,L1MB3,LINE,L1,5883,6181,-2,23797,29978 +6 + chr9 30120 30310 chr9,30120,30310,-,MER53,DNA,hAT,0,193,1,30120,30310 -6 - chr9 30758 30891 chr9,30741,30913,+,MLT1A,LTR,ERVL-MaLR,181,349,-25,30561,30938 +5 + chr9 34394 34704 chr9,34347,34704,-,MLT1J2,LTR,ERVL-MaLR,0,448,41,34347,34744 +5 - chr9 34999 35149 chr9,34999,35149,-,MIRb,SINE,MIR,-13,255,91,34986,35239 +6 - chr9 35149 35264 chr9,35149,35282,+,AluJr,SINE,Alu,1,133,-179,35149,35461 -2 + chr9 75124 75327 chr9,75124,75419,+,L1MA7,LINE,L1,5989,6283,-8,69136,75427 +5 + chr9 79345 79463 chr9,79327,79463,-,FLAM_C,SINE,Alu,-11,132,1,79316,79463 -2 - chr9 100816 100897 chr9,100816,100897,+,L2,LINE,L2,1767,1845,-1574,99050,102471 -6 + chr9 100944 101304 chr9,100944,101387,+,MLT1C,LTR,ERVL-MaLR,8,467,0,100937,101387 -5 + chr9 102929 102941 chr9,102929,103051,+,MER94,DNA,hAT-Blackjack,11,134,0,102919,103051 -1 + chr9 267966 268110 chr9,267703,268110,-,L1ME4c,LINE,L1,-227,603,199,267476,268308 +5 - chr9 454304 454497 chr9,454201,454497,+,MER44A,DNA,TcMar-Tigger,1,331,-8,454201,454505 -5 + chr9 456201 456219 chr9,456108,456219,+,L1MB8,LINE,L1,6064,6175,-3,450045,456222 -5 + chr9 458117 458281 chr9,458050,458335,-,MLT1J,LTR,ERVL-MaLR,-12,500,213,458038,458547 +3 - chr9 458370 458423 chr9,458364,458485,-,MLT1J,LTR,ERVL-MaLR,-378,134,1,457986,458485 +3 - chr9 459716 459764 chr9,459702,459764,-,MLT1H1,LTR,ERVL-MaLR,-198,393,330,459504,460093 +5 - chr9 459799 460055 chr9,459799,460055,-,MLT1H1,LTR,ERVL-MaLR,-281,274,1,459518,460055 +6 - chr9 460091 460164 chr9,460091,460164,-,MIR,SINE,MIR,-70,192,118,460021,460281 +6 - chr9 465971 466069 chr9,465971,466129,+,L2b,LINE,L2,3213,3375,0,462759,466129 -1 + chr9 466688 466767 chr9,466523,466767,-,MER33,DNA,hAT-Charlie,-75,249,3,466448,466769 +4 - chr9 466770 467012 chr9,466770,467012,-,Tigger15a,DNA,TcMar-Tigger,-426,289,42,466344,467053 +1 - chr9 488957 489021 chr9,488901,489021,+,MIR3,SINE,MIR,6,146,-62,488896,489083 -4 + chr9 492084 492112 chr9,492073,492166,-,L2a,LINE,L2,-401,3025,2936,491672,495101 +1 - chr9 673478 673509 chr9,673200,673509,-,AluSz6,SINE,Alu,0,312,1,673200,673509 +5 - chr9 680931 681046 chr9,680931,681237,+,AluJr,SINE,Alu,1,301,-11,680931,681248 -2 + chr9 2041910 2042024 chr9,2041910,2042024,-,MIR,SINE,MIR,-147,121,2,2041763,2042025 +6 - chr9 2042033 2042130 chr9,2042033,2042189,+,Tigger15a,DNA,TcMar-Tigger,83,228,-487,2041951,2042676 -2 + chr9 2045835 2045870 chr9,2045821,2045870,+,(CA)n,Simple_repeat,Simple_repeat,1,49,0,2045821,2045870 -4 + chr9 2422702 2422980 chr9,2422678,2422980,-,AluSz6,SINE,Alu,-7,305,1,2422671,2422980 +5 - chr9 2423368 2423523 chr9,2423368,2423523,+,L2c,LINE,L2,3247,3386,-1,2420122,2423524 -6 + chr9 2423862 2423941 chr9,2423862,2423941,-,L2b,LINE,L2,-9,3366,3287,2423853,2427227 +6 - chr9 2423990 2424510 chr9,2423990,2424564,-,MLT1L,LTR,ERVL-MaLR,0,610,1,2423990,2424564 +2 - chr9 2494180 2494302 chr9,2494022,2494320,+,AluSp,SINE,Alu,1,298,-15,2494022,2494335 -3 + chr9 2521903 2521964 chr9,2515633,2521964,-,L1HS,LINE,L1,0,6470,8,2515633,2521971 +4 - chr9 2521965 2522034 chr9,2521965,2522034,+,MER5B,DNA,hAT-Charlie,108,178,0,2521858,2522034 -1 + chr9 2523053 2523149 chr9,2522902,2523149,-,MIRb,SINE,MIR,0,268,2,2522902,2523150 +4 - chr9 2525538 2525587 chr9,2524998,2525587,+,MER41B,LTR,ERV1,21,634,0,2524978,2525587 -4 + chr9 2525587 2525717 chr9,2525587,2525761,-,MLT1H,LTR,ERVL-MaLR,-374,175,1,2525213,2525761 +2 - chr9 2621363 2621388 chr9,2621363,2621388,+,(CTG)n,Simple_repeat,Simple_repeat,1,26,0,2621363,2621388 -6 + chr9 2622100 2622112 chr9,2622026,2622112,+,(CCTCCTT)n,Simple_repeat,Simple_repeat,1,94,0,2622026,2622112 -4 + chr9 2622146 2622171 chr9,2622146,2622171,+,(CGG)n,Simple_repeat,Simple_repeat,1,25,0,2622146,2622171 -6 + chr9 3193489 3193571 chr9,3193489,3193571,-,MER5B,DNA,hAT-Charlie,0,178,104,3193489,3193674 -6 - chr9 3546778 3546897 chr9,3546775,3546897,+,AluJr4,SINE,Alu,185,295,-17,3546591,3546914 +2 + chr9 3606693 3606738 chr9,3605856,3607194,-,L1ME3A,LINE,L1,-297,5876,4484,3605559,3611677 -3 - chr9 3684169 3684428 chr9,3684169,3684428,-,ORSL-2a,DNA,hAT-Tip100,-1,341,66,3684168,3684493 +6 - chr9 3689332 3689344 chr9,3689041,3689344,-,AluSq2,SINE,Alu,-12,301,2,3689029,3689345 +4 - chr9 3689344 3689626 chr9,3689344,3690001,+,MLT1J-int,LTR,ERVL-MaLR,666,1317,-70,3688679,3690071 -1 + chr9 3690837 3690959 chr9,3690828,3690976,-,AluJo,SINE,Alu,-23,289,141,3690805,3691116 -3 - chr9 3691504 3691726 chr9,3691426,3691726,-,MLT1I,LTR,ERVL-MaLR,-25,386,68,3691401,3691793 -2 - chr9 3691745 3691814 chr9,3691745,3691915,-,Tigger1,DNA,TcMar-Tigger,-2246,172,1,3689499,3691915 -5 - chr9 3900860 3901248 chr9,3900860,3901293,+,LTR7C,LTR,ERV1,25,471,0,3900836,3901293 +5 + chr9 4071315 4071333 chr9,4071315,4071333,+,(TC)n,Simple_repeat,Simple_repeat,1,18,0,4071315,4071333 -6 + chr9 4305254 4305371 chr9,4305254,4305371,+,MIRb,SINE,MIR,7,134,-134,4305248,4305505 +6 + chr9 4305460 4305565 chr9,4305460,4305565,+,MLT1K,LTR,ERVL-MaLR,101,216,-379,4305360,4305944 +6 + chr9 4305565 4305699 chr9,4305565,4305699,+,MLT1L,LTR,ERVL-MaLR,136,270,-340,4305430,4306039 +6 + chr9 4676600 4676749 chr9,4676552,4676818,+,MLT1L,LTR,ERVL-MaLR,207,457,-153,4676346,4676971 -5 + chr9 4678875 4679047 chr9,4678875,4679047,+,MIR,SINE,MIR,17,216,-52,4678859,4679099 -6 + chr9 5351825 5351953 chr9,5351825,5351953,-,L1MC5,LINE,L1,-9,9295,9168,5351816,5361120 +6 - chr9 5351994 5352217 chr9,5351994,5352217,-,L1ME2z,LINE,L1,-298,6146,5910,5351696,5358126 +6 - chr9 5584495 5584629 chr9,5584495,5584629,+,L3,LINE,CR1,2907,3047,-1052,5581589,5585681 +6 + chr9 5584665 5584783 chr9,5584665,5584783,+,L3,LINE,CR1,3169,3295,-804,5581497,5585587 +6 + chr9 5584783 5584845 chr9,5584783,5585085,+,AluJb,SINE,Alu,8,309,-3,5584776,5585088 +4 + chr9 5588598 5588637 chr9,5588598,5588637,+,A-rich,Low_complexity,Low_complexity,1,39,0,5588598,5588637 +6 + chr9 5588673 5588722 chr9,5588673,5588722,-,L2b,LINE,L2,0,3375,3332,5588673,5592053 -6 - chr9 5719097 5719244 chr9,5719097,5719244,+,L2,LINE,L2,2069,2215,-1204,5717029,5720448 -6 + chr9 5719269 5719340 chr9,5719269,5719340,-,L2a,LINE,L2,-13,3413,3337,5719256,5722676 +6 - chr9 5719431 5719498 chr9,5719431,5719543,+,L2b,LINE,L2,3280,3386,-1,5716152,5719544 -2 + chr9 6047360 6047393 chr9,6047311,6047393,-,MIRc,SINE,MIR,-147,121,35,6047164,6047427 -1 - chr9 6066580 6066610 chr9,6066580,6066610,+,(AATA)n,Simple_repeat,Simple_repeat,1,31,0,6066580,6066610 +6 + chr9 6449340 6449407 chr9,6449142,6449407,+,ERV3-16A3_LTR,LTR,ERVL,38,326,-96,6449105,6449503 -4 + chr9 6449377 6449509 chr9,6449377,6449509,+,LTR16B1,LTR,ERVL,282,424,-39,6449096,6449548 -6 + chr9 6670425 6670469 chr9,6670161,6670469,-,MER2,DNA,TcMar-Tigger,-41,304,1,6670120,6670469 -2 - chr9 6670511 6670635 chr9,6670511,6670733,-,MIRb,SINE,MIR,-18,244,7,6670493,6670739 -5 - chr9 6707542 6707771 chr9,6707453,6707771,+,MER70B,LTR,ERVL,79,390,-188,6707375,6707959 +2 + chr9 6717873 6718329 chr9,6717626,6718329,+,LTR39,LTR,ERV1,1,694,-89,6717626,6718418 +2 + chr9 6718329 6718615 chr9,6718329,6718615,+,AluJb,SINE,Alu,2,291,-21,6718328,6718636 +6 + chr9 6718615 6718635 chr9,6718615,6718635,+,LTR39,LTR,ERV1,695,697,-86,6717921,6718721 +6 + chr9 6718635 6718934 chr9,6718635,6718934,+,AluSz6,SINE,Alu,4,302,-10,6718632,6718944 +1 + chr9 6718934 6718981 chr9,6718934,6719011,+,LTR39,LTR,ERV1,698,783,0,6718237,6719011 +1 + chr9 6719071 6719213 chr9,6719011,6719213,-,LTR72B,LTR,ERV1,-286,214,7,6718725,6719219 -2 - chr9 6721097 6721174 chr9,6721073,6721271,-,AluJb,SINE,Alu,-8,304,133,6721065,6721403 -3 - chr9 6723584 6723650 chr9,6723584,6723650,+,Alu,SINE,Alu,244,301,0,6723341,6723650 +5 + chr9 6723716 6723818 chr9,6723716,6723818,+,HERVL40-int,LTR,ERVL,3510,3616,-1914,6720207,6725732 +6 + chr9 6723812 6723854 chr9,6723812,6723854,+,HERVL40-int,LTR,ERVL,3765,3807,-1723,6720048,6725577 +6 + chr9 6726946 6727034 chr9,6726746,6727034,-,AluSx,SINE,Alu,-23,289,1,6726723,6727034 -2 - chr9 6727168 6727438 chr9,6727168,6727475,+,AluSq2,SINE,Alu,1,305,-8,6727168,6727483 +5 + chr9 6978625 6978835 chr9,6978561,6978835,-,MLT1-int,LTR,ERVL-MaLR,-456,915,636,6978105,6979470 -2 - chr9 7786181 7786688 chr9,7786181,7787822,-,HERVL18-int,LTR,ERVL,0,6047,4394,7786181,7792215 +1 - chr9 7932085 7932170 chr9,7932006,7932361,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,7932006,7932361 +3 - chr9 8701375 8701552 chr9,8701353,8701640,+,AluSp,SINE,Alu,2,286,-27,8701352,8701667 -1 + chr9 8858176 8858222 chr9,8858176,8858222,+,(CTTTCCT)n,Simple_repeat,Simple_repeat,1,46,0,8858176,8858222 +6 + chr9 8860549 8860625 chr9,8860549,8860625,+,LTR81A,LTR,Gypsy,1275,1350,0,8859275,8860625 +6 + chr9 8860763 8860884 chr9,8860763,8860884,-,MIRc,SINE,MIR,-114,154,11,8860649,8860894 -6 - chr9 8860993 8861054 chr9,8860993,8861054,+,MIR3,SINE,MIR,138,198,-10,8860856,8861064 +6 + chr9 8861061 8861168 chr9,8861061,8861168,+,UCON55,DNA,TcMar-Tigger,2,102,-90,8861060,8861258 +6 + chr9 8861302 8861418 chr9,8861302,8861418,+,MER112,DNA,hAT-Charlie,4,136,-125,8861299,8861543 +6 + chr9 8861418 8861449 chr9,8861418,8861449,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,8861418,8861449 +6 + chr9 8861496 8861671 chr9,8861496,8861671,-,MIRb,SINE,MIR,-65,203,20,8861431,8861690 -6 - chr9 8862074 8862255 chr9,8862074,8862371,+,AluSz,SINE,Alu,1,296,-16,8862074,8862387 +5 + chr9 8936130 8936179 chr9,8936130,8936453,+,AluJb,SINE,Alu,3,309,-3,8936128,8936456 +4 + chr9 8962124 8962187 chr9,8962098,8962187,-,L2a,LINE,L2,-4,3383,3294,8962094,8965480 -2 - chr9 8962829 8963077 chr9,8962829,8963442,+,L1ME3B,LINE,L1,5551,6223,-19,8957279,8963461 +5 + chr9 9800609 9800674 chr9,9800609,9800710,+,L2c,LINE,L2,3282,3387,0,9797328,9800710 +4 + chr9 10617861 10618107 chr9,10617519,10618107,+,MLT2B2,LTR,ERVL,1,515,0,10617519,10618107 +2 + chr9 10618187 10618474 chr9,10618187,10618474,+,AluSg,SINE,Alu,1,294,-16,10618187,10618490 +6 + chr9 10619150 10619431 chr9,10619150,10619431,-,AluSz,SINE,Alu,-23,289,1,10619127,10619431 -6 - chr9 10619432 10619593 chr9,10619432,10619593,-,MIR,SINE,MIR,-89,173,11,10619343,10619603 -6 - chr9 10619782 10619833 chr9,10619782,10619833,+,(TTTATA)n,Simple_repeat,Simple_repeat,1,55,0,10619782,10619833 +6 + chr9 10632083 10632111 chr9,10632082,10632111,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,10632082,10632111 -4 + chr9 11275314 11275515 chr9,11275266,11275515,+,MER61F,LTR,ERV1,2,295,-381,11275265,11275896 -5 + chr9 11275493 11275536 chr9,11275493,11275562,+,MER61F,LTR,ERV1,99,165,-404,11275395,11275966 -2 + chr9 11276253 11276294 chr9,11276153,11276294,+,L2c,LINE,L2,3008,3152,-235,11273146,11276529 -4 + chr9 12098759 12098787 chr9,12098759,12098787,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,12098759,12098787 -6 + chr9 12146286 12146401 chr9,12146286,12146638,-,L1MC4a,LINE,L1,-1063,6819,6444,12145223,12153081 +2 - chr9 12159124 12159147 chr9,12159124,12159445,+,MLT1A1,LTR,ERVL-MaLR,1,408,0,12159124,12159445 -1 + chr9 12700106 12700197 chr9,12700106,12700197,-,MIRb,SINE,MIR,-6,262,172,12700100,12700368 +6 - chr9 13274519 13274546 chr9,13274519,13274546,+,(TTTA)n,Simple_repeat,Simple_repeat,1,28,0,13274519,13274546 -6 + chr9 13406857 13407027 chr9,13406857,13407027,+,MER135,DNA,DNA,23,193,-35,13406835,13407062 -6 + chr9 13407369 13407488 chr9,13407369,13407488,-,AmnSINE1,SINE,5S-Deu-L2,-457,118,1,13406912,13407488 +6 - chr9 13407520 13407554 chr9,13407520,13407554,+,(TTTCT)n,Simple_repeat,Simple_repeat,1,37,0,13407520,13407554 -6 + chr9 13407554 13407595 chr9,13407554,13407595,-,Alu,SINE,Alu,0,301,260,13407554,13407854 +6 - chr9 13407595 13407786 chr9,13407595,13407786,-,AluSp,SINE,Alu,-120,193,2,13407475,13407787 +6 - chr9 13408164 13408433 chr9,13408164,13408509,+,MLT1I,LTR,ERVL-MaLR,16,391,-20,13408149,13408529 -2 + chr9 13487103 13487407 chr9,13486943,13487407,+,MLT1D,LTR,ERVL-MaLR,5,505,0,13486939,13487407 +2 + chr9 13945456 13945610 chr9,13945456,13945791,-,L1M6,LINE,L1,-3469,2931,2584,13941987,13948374 -5 - chr9 14025971 14025998 chr9,14025911,14025998,+,(GAAG)n,Simple_repeat,Simple_repeat,1,87,0,14025911,14025998 +1 + chr9 14357648 14357908 chr9,14357648,14358153,+,L1MB8,LINE,L1,5652,6154,-24,14351997,14358177 +5 + chr9 14587004 14587215 chr9,14587004,14587215,+,MIRb,SINE,MIR,20,266,-2,14586985,14587217 -6 + chr9 14589271 14589505 chr9,14589271,14589505,+,L1MB7,LINE,L1,413,645,-6080,14588859,14595585 -6 + chr9 14589769 14590065 chr9,14589769,14591200,+,L1MB7,LINE,L1,1001,2587,-4153,14588769,14595353 -1 + chr9 16473268 16473356 chr9,16473268,16473384,+,MIRc,SINE,MIR,122,258,-10,16473147,16473394 +4 + chr9 17112273 17112311 chr9,17112094,17112311,+,Tigger1,DNA,TcMar-Tigger,2202,2416,-2,17109893,17112313 +2 + chr9 17112311 17112529 chr9,17112311,17112529,-,L1MA9,LINE,L1,-6786,703,494,17105525,17113022 -6 - chr9 17112644 17112815 chr9,17112644,17113525,-,L1MC1,LINE,L1,-3007,3139,2233,17109637,17115757 -5 - chr9 18360597 18360676 chr9,18360567,18360676,+,MER20B,DNA,hAT-Charlie,62,180,-603,18360506,18361279 -5 + chr9 19291337 19291421 chr9,19291157,19291421,+,L1ME4a,LINE,L1,746,1009,-6094,19290412,19297515 -5 + chr9 19291421 19291443 chr9,19291421,19291722,+,AluSz6,SINE,Alu,1,300,-12,19291421,19291734 -2 + chr9 19292275 19292330 chr9,19292031,19292330,-,AluSq,SINE,Alu,-20,293,1,19292011,19292330 +4 - chr9 19292537 19292576 chr9,19292537,19292844,-,AluSq10,SINE,Alu,-5,308,2,19292532,19292845 +1 - chr9 19371499 19371675 chr9,19371499,19371675,-,L1MC4a,LINE,L1,-2,7880,7698,19371497,19379372 +6 - chr9 19375451 19375560 chr9,19375426,19375560,+,MER5A1,DNA,hAT-Charlie,26,160,-6,19375401,19375566 +1 + chr9 19453262 19453330 chr9,19453262,19453330,-,L2,LINE,L2,-906,2513,2449,19452356,19455778 -6 - chr9 19453424 19453534 chr9,19453424,19453534,-,HAL1b,LINE,L1,-30,2391,2278,19453394,19455811 -6 - chr9 19453691 19453728 chr9,19453691,19453728,+,(TGAATAC)n,Simple_repeat,Simple_repeat,1,38,0,19453691,19453728 +6 + chr9 19926574 19926609 chr9,19926574,19926609,+,(A)n,Simple_repeat,Simple_repeat,1,35,0,19926574,19926609 +6 + chr9 19926974 19927038 chr9,19926974,19927038,-,MER133A,DNA?,DNA?,-6,100,37,19926968,19927074 -6 - chr9 19927352 19927462 chr9,19927352,19927462,+,MIRb,SINE,MIR,120,244,-24,19927233,19927486 +6 + chr9 19928399 19928516 chr9,19928399,19928516,+,MIRb,SINE,MIR,26,142,-126,19928374,19928642 +6 + chr9 19928640 19928754 chr9,19928640,19928754,-,MIRb,SINE,MIR,-42,226,113,19928598,19928866 -6 - chr9 19928765 19929147 chr9,19928765,19929147,+,L2c,LINE,L2,2793,3185,-202,19925973,19929349 +6 + chr9 19929400 19929937 chr9,19929400,19930530,+,Tigger3b,DNA,TcMar-Tigger,1,1231,0,19929400,19930530 +5 + chr9 21476899 21477035 chr9,21476792,21477087,-,LTR16,LTR,ERVL,-14,424,118,21476778,21477204 +3 - chr9 21858910 21859221 chr9,21858861,21859221,-,MLT1A0,LTR,ERVL-MaLR,-2,363,1,21858859,21859221 +5 - chr9 21860251 21860400 chr9,21860251,21860400,-,MER63A,DNA,hAT-Blackjack,-52,158,1,21860199,21860400 +6 - chr9 21860733 21861061 chr9,21860733,21861061,-,AluSg,SINE,Alu,-3,307,1,21860730,21861061 +6 - chr9 21861311 21861367 chr9,21861311,21861367,+,(TA)n,Simple_repeat,Simple_repeat,1,56,0,21861311,21861367 -6 + chr9 21861715 21861824 chr9,21861715,21861824,-,MIR,SINE,MIR,-76,186,71,21861639,21861894 +6 - chr9 21892188 21893173 chr9,21891086,21893173,+,L1PA15,LINE,L1,1455,3534,-3139,21889632,21896312 +1 + chr9 21893173 21893274 chr9,21893173,21893274,-,THE1D,LTR,ERVL-MaLR,-281,100,1,21892892,21893274 -6 - chr9 21893274 21893857 chr9,21893274,21893926,+,L1PA15,LINE,L1,3535,4186,-2487,21889740,21896413 +5 + chr9 21966929 21967152 chr9,21966671,21967152,+,L1MB5,LINE,L1,5658,6152,-22,21961014,21967174 +1 + chr9 21967571 21967715 chr9,21967571,21967715,+,MER104,DNA,TcMar-Tc2,1,177,-4,21967571,21967719 +6 + chr9 21995108 21995153 chr9,21995108,21995153,+,(CGGCG)n,Simple_repeat,Simple_repeat,1,47,0,21995108,21995153 +6 + chr9 22032931 22032986 chr9,22032931,22033237,+,MER1B,DNA,hAT-Charlie,32,339,0,22032900,22033237 +5 + chr9 22046317 22046404 chr9,22046214,22046404,-,MIR,SINE,MIR,-28,234,45,22046186,22046448 -2 - chr9 22056252 22056366 chr9,22056039,22056366,-,AluSx3,SINE,Alu,-7,304,2,22056032,22056367 -2 - chr9 22056366 22056387 chr9,22056366,22056444,-,L2c,LINE,L2,-286,3101,3024,22056080,22059467 -4 - chr9 22058559 22058734 chr9,22058559,22058734,-,MLT1I,LTR,ERVL-MaLR,0,411,231,22058559,22058964 -6 - chr9 22058742 22059054 chr9,22058742,22059084,-,THE1A,LTR,ERVL-MaLR,0,355,6,22058742,22059089 -4 - chr9 22066235 22066353 chr9,22066212,22066494,-,AluJr,SINE,Alu,-11,301,1,22066201,22066494 -3 - chr9 22092308 22092469 chr9,22089830,22095306,-,L1PA4,LINE,L1,-2,6153,656,22089828,22095961 -3 - chr9 22096372 22096446 chr9,22096343,22096446,-,L2a,LINE,L2,-31,3395,3291,22096312,22099736 -2 - chr9 22096492 22096514 chr9,22096492,22096951,+,L2c,LINE,L2,2766,3217,-170,22093727,22097121 +4 + chr9 22112320 22112395 chr9,22112257,22112502,-,MLT1O,LTR,ERVL-MaLR,-164,431,127,22112093,22112628 -3 - chr9 22113666 22113733 chr9,22113591,22113733,+,MIRc,SINE,MIR,107,248,-20,22113485,22113753 +1 + chr9 22120504 22120597 chr9,22120486,22120597,-,MIR1_Amn,SINE,MIR,-75,155,47,22120411,22120643 -5 - chr9 22120749 22120824 chr9,22120749,22120824,+,(TCA)n,Simple_repeat,Simple_repeat,1,77,0,22120749,22120824 +6 + chr9 22120839 22121053 chr9,22120839,22121053,-,MIR,SINE,MIR,-21,241,5,22120818,22121057 -6 - chr9 22213291 22213349 chr9,22213291,22213514,+,MER5C1,DNA,hAT-Charlie,1,217,-46,22213291,22213560 -2 + chr9 22213677 22213769 chr9,22213663,22213785,+,L2a,LINE,L2,3302,3425,-1,22210362,22213786 -3 + chr9 22674457 22674636 chr9,22674457,22674636,+,GA-rich,Low_complexity,Low_complexity,1,182,0,22674457,22674636 +6 + chr9 22687606 22687627 chr9,22687606,22688425,+,LTR12,LTR,ERV1,1,826,0,22687606,22688425 +5 + chr9 22723309 22723388 chr9,22723250,22723388,+,MLT1J1,LTR,ERVL-MaLR,3,140,-304,22723248,22723692 +2 + chr9 22767962 22768316 chr9,22767735,22768841,-,L1MC3,LINE,L1,0,7785,6743,22767735,22775583 -5 - chr9 22820738 22821598 chr9,22820568,22821847,+,HSMAR1,DNA,TcMar-Mariner,1,1287,0,22820568,22821847 +3 + chr9 22823252 22823514 chr9,22823224,22823514,+,HERV17-int,LTR,ERV1,8335,8626,0,22814890,22823514 +2 + chr9 22823514 22823839 chr9,22823514,22823839,+,LTR17,LTR,ERV1,1,325,-455,22823514,22824294 +6 + chr9 22823840 22823869 chr9,22823840,22823869,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,22823840,22823869 +6 + chr9 22823888 22824213 chr9,22823888,22824213,-,L1MEg,LINE,L1,-3509,2637,2318,22820379,22826530 -5 - chr9 23830187 23830245 chr9,23830187,23830245,+,(CCTC)n,Simple_repeat,Simple_repeat,1,59,0,23830187,23830245 +6 + chr9 23849601 23849633 chr9,23849601,23849633,+,(TTCCC)n,Simple_repeat,Simple_repeat,1,32,0,23849601,23849633 +6 + chr9 23894990 23895598 chr9,23893895,23895598,-,L1PA4,LINE,L1,-4,6151,4445,23893891,23900042 +5 - chr9 23897985 23898051 chr9,23897976,23898051,-,L1ME3A,LINE,L1,-88,6085,6016,23897888,23904066 +4 - chr9 24590271 24590451 chr9,24590029,24590586,+,L1MEg,LINE,L1,4326,4964,-1182,24585704,24591768 +3 + chr9 26092361 26092447 chr9,26091839,26092635,-,HAL1M8,LINE,L1,-1041,1950,1131,26090798,26093765 -3 - chr9 26094576 26094627 chr9,26094576,26094862,+,AluJb,SINE,Alu,1,294,-18,26094576,26094880 +4 + chr9 26109953 26110139 chr9,26105097,26110710,+,HERVL-int,LTR,ERVL,1,5654,0,26105097,26110710 +3 + chr9 26116129 26116159 chr9,26116087,26116159,+,MamRTE1,LINE,RTE-BovB,120,191,-3621,26115968,26119780 +2 + chr9 26116177 26116246 chr9,26116177,26116462,+,L1PA10,LINE,L1,5856,6156,-12,26110322,26116474 +4 + chr9 26117031 26117560 chr9,26117031,26117560,+,MamGypLTR1d,LTR,Gypsy,286,813,0,26116746,26117560 +6 + chr9 26117570 26117731 chr9,26117570,26117731,-,MIRb,SINE,MIR,-72,196,35,26117498,26117765 -6 - chr9 26643344 26643462 chr9,26643344,26643462,+,L2c,LINE,L2,3021,3140,-247,26640324,26643709 -6 + chr9 26643627 26643797 chr9,26643627,26643797,+,MIRb,SINE,MIR,5,193,-75,26643623,26643872 -6 + chr9 26643802 26643887 chr9,26643802,26643887,-,L2c,LINE,L2,-36,3390,3278,26643766,26647164 +6 - chr9 26746986 26747044 chr9,26746986,26747099,+,MER44A,DNA,TcMar-Tigger,18,128,-211,26746969,26747310 +4 + chr9 26747510 26747607 chr9,26747397,26747607,+,MER44A,DNA,TcMar-Tigger,129,337,-2,26747269,26747609 +2 + chr9 26748216 26748312 chr9,26748021,26748394,+,THE1C,LTR,ERVL-MaLR,1,375,0,26748021,26748394 +3 + chr9 26786786 26786874 chr9,26786539,26786955,+,MSTB1,LTR,ERVL-MaLR,1,432,0,26786539,26786955 +5 + chr9 26955837 26955854 chr9,26955837,26955854,+,(A)n,Simple_repeat,Simple_repeat,1,17,0,26955837,26955854 -6 + chr9 27102640 27103076 chr9,27102640,27103276,+,L1MB2,LINE,L1,5485,6164,-7,27097156,27103283 +4 + chr9 27262712 27262726 chr9,27262489,27262726,-,MIRb,SINE,MIR,-30,238,2,27262459,27262727 +4 - chr9 27263209 27263252 chr9,27263058,27263252,+,MIR,SINE,MIR,11,215,-47,27263048,27263299 -4 + chr9 27275869 27275950 chr9,27275869,27276483,-,Tigger17a,DNA,TcMar-Tigger,-1,653,2,27275868,27276484 +2 - chr9 27276993 27277110 chr9,27276993,27277291,+,AluSz,SINE,Alu,1,303,-9,27276993,27277300 -2 + chr9 27280874 27280924 chr9,27280874,27281200,+,MER66D,LTR,ERV1,3,313,-171,27280872,27281371 -2 + chr9 27396895 27396977 chr9,27396863,27396977,-,MIR3,SINE,MIR,-45,163,40,27396818,27397016 -2 - chr9 27829305 27829488 chr9,27829305,27829623,+,MLT1J1,LTR,ERVL-MaLR,64,384,-60,27829242,27829683 +4 + chr9 27843169 27843378 chr9,27843169,27843378,-,L2b,LINE,L2,-108,3279,3080,27843061,27846457 -6 - chr9 27843420 27843699 chr9,27843420,27843699,+,MIR,SINE,MIR,12,262,0,27843409,27843699 +6 + chr9 27843704 27843755 chr9,27843704,27843755,-,MIRc,SINE,MIR,-27,241,198,27843677,27843952 -6 - chr9 27844440 27844481 chr9,27844440,27844814,-,THE1C,LTR,ERVL-MaLR,0,375,1,27844440,27844814 -5 - chr9 27938376 27938575 chr9,27938376,27938575,-,MIR,SINE,MIR,-36,232,2,27938340,27938576 +6 - chr9 27940128 27940160 chr9,27940128,27940160,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,27940128,27940160 -6 + chr9 27940372 27940470 chr9,27940372,27940470,-,LFSINE_Vert,SINE,tRNA,-16,443,340,27940356,27940809 +6 - chr9 27940692 27940734 chr9,27940692,27940734,+,A-rich,Low_complexity,Low_complexity,1,44,0,27940692,27940734 -6 + chr9 27941154 27941456 chr9,27941154,27941456,+,AluSc,SINE,Alu,1,306,-3,27941154,27941459 -6 + chr9 31381368 31381475 chr9,31381368,31381475,+,MLT1H,LTR,ERVL-MaLR,241,340,-209,31381128,31381684 -6 + chr9 32643103 32643674 chr9,32642512,32643674,-,L1PA14,LINE,L1,-1,6160,4981,32642511,32648654 +5 - chr9 32648420 32648670 chr9,32648420,32648670,+,MIRb,SINE,MIR,5,257,-11,32648416,32648681 +6 + chr9 32841580 32841707 chr9,32841580,32841707,+,L2b,LINE,L2,3252,3375,0,32838329,32841707 -6 + chr9 33177420 33177469 chr9,33177416,33177637,+,MER58A,DNA,hAT-Charlie,1,224,0,33177416,33177637 +3 + chr9 33178896 33178926 chr9,33178827,33178926,-,MLT1H,LTR,ERVL-MaLR,-25,386,282,33178802,33179207 -2 - chr9 33179356 33179555 chr9,33179356,33179555,-,L3,LINE,CR1,-7,4092,3890,33179349,33183444 -6 - chr9 33179555 33179897 chr9,33179555,33179897,+,MER47A,DNA,TcMar-Tigger,1,366,0,33179555,33179897 +5 + chr9 33179897 33179983 chr9,33179897,33180075,-,L3,LINE,CR1,-210,3889,3718,33179687,33183792 -5 - chr9 33404287 33404350 chr9,33404287,33404483,-,L2b,LINE,L2,-53,3322,3097,33404234,33407579 -3 - chr9 33409882 33409948 chr9,33409864,33410084,-,L1PA14,LINE,L1,0,6161,5928,33409864,33416011 -5 - chr9 33512959 33513079 chr9,33512920,33513079,-,MIRb,SINE,MIR,-51,211,59,33512869,33513137 +5 - chr9 33514215 33514325 chr9,33514060,33514348,+,AluJr,SINE,Alu,1,298,-14,33514060,33514362 -3 + chr9 33580695 33580762 chr9,33579509,33581046,+,MSTA-int,LTR,ERVL-MaLR,28,1631,0,33579482,33581046 +1 + chr9 33605011 33605293 chr9,33604963,33605305,+,LTR46,LTR,ERV1,1,414,-46,33604963,33605351 +5 + chr9 33697459 33697506 chr9,33697167,33697506,-,MLT1A1,LTR,ERVL-MaLR,0,408,1,33697167,33697506 -1 - chr9 33697983 33698511 chr9,33697983,33698511,-,MLT1E2,LTR,ERVL-MaLR,-29,598,1,33697954,33698511 -6 - chr9 33700179 33700557 chr9,33700179,33700557,-,THE1D,LTR,ERVL-MaLR,0,381,1,33700179,33700557 -6 - chr9 33700628 33700986 chr9,33700628,33701018,+,MER74A,LTR,ERVL,24,408,-150,33700605,33701168 +5 + chr9 33722539 33722555 chr9,33722539,33722730,+,MIRb,SINE,MIR,5,213,-55,33722535,33722785 +5 + chr9 33738379 33738416 chr9,33738379,33738877,+,L1MEc,LINE,L1,779,1246,-5154,33737601,33744031 -1 + chr9 33909609 33909716 chr9,33909600,33909716,-,AluY,SINE,Alu,-193,118,3,33909407,33909718 +5 - chr9 33910140 33910268 chr9,33910140,33910446,-,AluSx1,SINE,Alu,-8,304,1,33910132,33910446 +2 - chr9 33910992 33911122 chr9,33910820,33911125,+,AluSz6,SINE,Alu,1,306,-6,33910820,33911131 -1 + chr9 34089833 34089889 chr9,34089833,34089889,-,MER5A,DNA,hAT-Charlie,-131,58,6,34089702,34089894 -6 - chr9 34096073 34096225 chr9,34096073,34096374,+,AluJr,SINE,Alu,1,279,-33,34096073,34096407 +5 + chr9 34523994 34524133 chr9,34523994,34524133,+,L2,LINE,L2,2250,2404,-1015,34521745,34525148 +6 + chr9 34524148 34524241 chr9,34524148,34524262,+,MIRb,SINE,MIR,61,182,-86,34524088,34524348 +5 + chr9 34582335 34582466 chr9,34582297,34582466,-,MIRb,SINE,MIR,-97,171,7,34582200,34582472 -2 - chr9 34678100 34678268 chr9,34677918,34678330,+,MLT2A1,LTR,ERVL,3,423,-21,34677916,34678351 +3 + chr9 34680976 34681298 chr9,34680976,34681309,+,MLT1I,LTR,ERVL-MaLR,87,408,-3,34680890,34681312 +5 + chr9 35003058 35003292 chr9,35003058,35003292,+,L1M4,LINE,L1,806,1050,-6467,35002253,35009759 +6 + chr9 35003292 35003663 chr9,35003292,35003704,+,LTR7,LTR,ERV1,1,448,-2,35003292,35003706 +5 + chr9 35038625 35038778 chr9,35038609,35038778,-,AluJo,SINE,Alu,-11,301,138,35038598,35038915 +5 - chr9 35038802 35038916 chr9,35038802,35038916,-,Charlie8,DNA,hAT-Charlie,-2163,265,152,35036639,35039067 +6 - chr9 35039001 35039308 chr9,35039001,35039308,+,AluY,SINE,Alu,2,308,-3,35039000,35039311 -6 + chr9 35039383 35040409 chr9,35039383,35040409,+,L2c,LINE,L2,2305,3387,0,35037079,35040409 -6 + chr9 35040454 35040541 chr9,35040454,35040541,-,MIR1_Amn,SINE,MIR,-126,104,14,35040328,35040554 +6 - chr9 35040798 35040834 chr9,35040798,35040834,-,MIR,SINE,MIR,-42,220,184,35040756,35041017 +6 - chr9 35040834 35041419 chr9,35040834,35041419,-,LTR10C,LTR,ERV1,0,591,1,35040834,35041419 +6 - chr9 35041419 35041457 chr9,35041419,35041457,-,MIR,SINE,MIR,-79,183,146,35041340,35041602 +6 - chr9 35041460 35041580 chr9,35041460,35041580,+,FLAM_A,SINE,Alu,1,121,-21,35041460,35041601 -6 + chr9 35041586 35041876 chr9,35041586,35041876,+,AluJb,SINE,Alu,2,286,-26,35041585,35041902 -6 + chr9 35041892 35042049 chr9,35041892,35042049,-,MIR,SINE,MIR,-93,169,9,35041799,35042057 +6 - chr9 35042923 35042963 chr9,35042923,35042963,+,GA-rich,Low_complexity,Low_complexity,1,40,0,35042923,35042963 -6 + chr9 35097760 35098086 chr9,35097624,35098086,+,L2a,LINE,L2,2845,3376,-50,35094780,35098136 +2 + chr9 35098131 35098141 chr9,35098131,35098319,+,L2b,LINE,L2,2629,2824,-595,35095503,35098914 +5 + chr9 35360540 35360636 chr9,35360515,35360636,+,L2a,LINE,L2,3279,3399,-27,35357237,35360663 -5 + chr9 35360659 35360978 chr9,35360659,35360978,-,AluJr,SINE,Alu,-22,290,1,35360637,35360978 +6 - chr9 35361005 35361093 chr9,35361005,35361093,-,MIRb,SINE,MIR,-79,189,105,35360926,35361197 +6 - chr9 35642514 35642554 chr9,35641384,35642827,-,HERV17-int,LTR,ERV1,-2607,6019,4572,35638777,35647398 -1 - chr9 35642880 35643368 chr9,35642827,35643368,+,HERVH-int,LTR,ERV1,1600,2115,-5598,35641228,35648966 +2 + chr9 35772163 35772376 chr9,35772160,35772420,-,L2,LINE,L2,-1082,2337,2063,35771078,35774482 -1 - chr9 35780267 35780495 chr9,35780027,35780495,+,LTR78B,LTR,ERV1,808,1292,-4,35779220,35780499 +2 + chr9 35780588 35780598 chr9,35780588,35780717,+,AluJb,SINE,Alu,1,129,-183,35780588,35780900 +5 + chr9 35790329 35790416 chr9,35790329,35790416,+,L2c,LINE,L2,3292,3370,-17,35787038,35790433 +6 + chr9 35910475 35910508 chr9,35910475,35910508,+,(GTG)n,Simple_repeat,Simple_repeat,1,33,0,35910475,35910508 +6 + chr9 35911610 35911682 chr9,35911610,35911682,+,MamTip3,DNA,hAT-Tip100,422,500,0,35911189,35911682 +6 + chr9 35937017 35937151 chr9,35936785,35937204,+,MSTB,LTR,ERVL-MaLR,1,426,0,35936785,35937204 +5 + chr9 36856555 36856582 chr9,36856529,36856773,-,AluY,SINE,Alu,-4,307,64,36856525,36856836 -1 - chr9 36861027 36861057 chr9,36861027,36861057,+,(GGAGG)n,Simple_repeat,Simple_repeat,1,30,0,36861027,36861057 +6 + chr9 36861211 36861265 chr9,36861211,36861265,-,L2a,LINE,L2,0,3426,3375,36861211,36864639 -6 - chr9 36861286 36861375 chr9,36861286,36861932,-,L2a,LINE,L2,0,3426,2713,36861286,36864644 -5 - chr9 37007688 37007760 chr9,37007688,37007760,-,L1ME4a,LINE,L1,-3,6121,6051,37007685,37013810 -6 - chr9 37007774 37007868 chr9,37007774,37007868,-,L1ME4a,LINE,L1,-127,5997,5901,37007647,37013768 -6 - chr9 37007868 37008040 chr9,37007868,37008044,-,AluSx,SINE,Alu,-1,311,136,37007867,37008179 -5 - chr9 37073531 37073634 chr9,37073527,37073634,+,L2b,LINE,L2,2999,3111,-264,37070529,37073898 -5 + chr9 37073652 37073867 chr9,37073652,37074153,-,L1MC4,LINE,L1,0,8042,7420,37073652,37081572 +2 - chr9 37075195 37075261 chr9,37075195,37075261,-,L2b,LINE,L2,0,3375,3310,37075195,37078570 +6 - chr9 37075316 37075569 chr9,37075316,37075569,+,MIRb,SINE,MIR,8,260,-8,37075309,37075577 -6 + chr9 37078813 37078899 chr9,37078637,37078899,+,LTR23,LTR,ERV1,42,306,-131,37078596,37079030 -5 + chr9 37078899 37078999 chr9,37078899,37078999,+,AluSz,SINE,Alu,2,99,-213,37078898,37079212 -6 + chr9 37079004 37079150 chr9,37079004,37079150,+,LTR23,LTR,ERV1,293,437,0,37078712,37079150 -6 + chr9 37112548 37112670 chr9,37112514,37112670,+,MIR3,SINE,MIR,10,193,-15,37112505,37112685 -5 + chr9 37113039 37113255 chr9,37113039,37113559,-,L1MC4,LINE,L1,0,8042,7420,37113039,37120978 +2 - chr9 37114897 37114963 chr9,37114897,37114963,-,L2b,LINE,L2,0,3375,3310,37114897,37118272 +6 - chr9 37115013 37115272 chr9,37115013,37115272,+,MIRb,SINE,MIR,3,260,-8,37115011,37115280 -6 + chr9 37384306 37384355 chr9,37384238,37384355,-,FLAM_C,SINE,Alu,-21,122,2,37384217,37384356 +4 - chr9 37509150 37509177 chr9,37508914,37509177,-,L2b,LINE,L2,-18,3357,3081,37508896,37512257 -1 - chr9 37510242 37510299 chr9,37510054,37510355,+,AluJb,SINE,Alu,1,295,-17,37510054,37510372 +5 + chr9 38375329 38375422 chr9,38375306,38375422,-,MIR3,SINE,MIR,-14,194,85,38375292,38375506 -2 - chr9 38376300 38376430 chr9,38376271,38376486,+,MLT1A,LTR,ERVL-MaLR,181,373,-1,38376091,38376487 +5 + chr9 38540567 38540849 chr9,38540550,38540896,-,LTR46,LTR,ERV1,-35,425,2,38540515,38540897 +5 - chr9 38622685 38623067 chr9,38622685,38623067,-,L1MC,LINE,L1,-751,5395,5004,38621934,38628070 -6 - chr9 38623064 38623301 chr9,38623064,38623301,+,L1MA7,LINE,L1,5933,6183,-108,38617132,38623409 +5 + chr9 38623302 38623343 chr9,38623302,38623343,+,(TATT)n,Simple_repeat,Simple_repeat,1,42,0,38623302,38623343 +6 + chr9 38623343 38623434 chr9,38623343,38623434,-,AluYk2,SINE,Alu,-26,285,195,38623317,38623628 -6 - chr9 38623434 38623547 chr9,38623434,38623547,+,L1MA7,LINE,L1,6173,6288,-3,38617262,38623550 +6 + chr9 38623569 38624990 chr9,38623569,38625012,-,L1MCa,LINE,L1,-1152,5169,3607,38622417,38628618 -5 - chr9 38804007 38804108 chr9,38803599,38804418,-,L1MB5,LINE,L1,-4138,3427,2565,38799461,38806982 -1 - chr9 38851648 38851813 chr9,38851648,38851813,+,L1M2,LINE,L1,4134,4295,-1851,38847515,38853664 +6 + chr9 38851813 38851885 chr9,38851813,38851885,+,L1MA5A,LINE,L1,6226,6297,0,38845588,38851885 +6 + chr9 38851885 38851916 chr9,38851885,38851920,+,L1M2,LINE,L1,4296,4331,-1815,38847590,38853735 +5 + chr9 39395811 39395843 chr9,39395811,39395843,+,(TAA)n,Simple_repeat,Simple_repeat,1,34,0,39395811,39395843 -6 + chr9 39396444 39396575 chr9,39396444,39396743,-,AluSc,SINE,Alu,-11,298,1,39396433,39396743 +2 - chr9 39397169 39397301 chr9,39396994,39397301,+,AluY,SINE,Alu,1,305,-6,39396994,39397307 -4 + chr9 39405038 39405194 chr9,39404962,39405194,-,MLT1C,LTR,ERVL-MaLR,0,467,215,39404962,39405408 +4 - chr9 40218030 40218147 chr9,40217846,40218147,-,AluJo,SINE,Alu,-11,301,2,40217835,40218148 +5 - chr9 40218160 40218290 chr9,40218160,40218290,-,FLAM_C,SINE,Alu,-10,133,10,40218150,40218299 +6 - chr9 40218295 40218657 chr9,40218295,40218657,+,MLT1D,LTR,ERVL-MaLR,150,497,-8,40218146,40218665 -6 + chr9 40218667 40218964 chr9,40218667,40218964,+,AluJo,SINE,Alu,2,302,-10,40218666,40218974 -6 + chr9 40218969 40219493 chr9,40218969,40219493,-,L2a,LINE,L2,-191,3196,2646,40218778,40222138 +6 - chr9 40219586 40219884 chr9,40219586,40219884,+,AluJr,SINE,Alu,1,299,-13,40219586,40219897 -6 + chr9 40220774 40220952 chr9,40220646,40220952,+,MLT1H-int,LTR,ERVL-MaLR,541,865,-544,40220106,40221496 -4 + chr9 40220960 40221531 chr9,40220960,40221531,+,L1ME2z,LINE,L1,5455,6037,-407,40215506,40221938 -6 + chr9 40290089 40290117 chr9,40289936,40290117,-,L1MC4,LINE,L1,-1039,7003,6819,40288897,40296935 -2 - chr9 40321299 40321355 chr9,40321112,40321355,-,THE1D-int,LTR,ERVL-MaLR,-395,1236,955,40320717,40322309 -1 - chr9 40321372 40321553 chr9,40321372,40321553,+,MSTA,LTR,ERVL-MaLR,103,282,-82,40321270,40321635 +6 + chr9 40321524 40321593 chr9,40321524,40321593,-,HSAT5,Satellite,Satellite,-8,78,9,40321516,40321601 -6 - chr9 40321867 40321971 chr9,40321867,40321971,-,HSAT5,Satellite,Satellite,-3,96,1,40321864,40321971 -6 - chr9 40322031 40322115 chr9,40322031,40322115,-,HSAT5,Satellite,Satellite,-2,84,1,40322029,40322115 -6 - chr9 40322194 40322288 chr9,40322194,40322288,-,HSAT5,Satellite,Satellite,-7,92,1,40322187,40322288 -6 - chr9 40322304 40322394 chr9,40322304,40322394,-,HSAT5,Satellite,Satellite,-1,88,1,40322303,40322394 -6 - chr9 40326615 40326792 chr9,40326615,40326792,+,MIRb,SINE,MIR,35,221,-47,40326581,40326839 +6 + chr9 40326957 40327037 chr9,40326957,40327037,+,(TGTGTG)n,Simple_repeat,Simple_repeat,1,80,0,40326957,40327037 +6 + chr9 40327129 40327436 chr9,40327129,40327436,+,LTR16C,LTR,ERVL,133,446,-43,40326997,40327479 +6 + chr9 40327441 40327522 chr9,40327441,40327522,+,LTR16C,LTR,ERVL,407,489,0,40327035,40327522 +6 + chr9 40327573 40327679 chr9,40327573,40327679,-,MIR,SINE,MIR,-122,140,35,40327451,40327713 -6 - chr9 40327835 40328054 chr9,40327835,40328054,-,MIR,SINE,MIR,0,262,15,40327835,40328068 -6 - chr9 40328145 40328441 chr9,40328145,40328441,+,AluY,SINE,Alu,2,297,-14,40328144,40328455 +6 + chr9 40328717 40328851 chr9,40328717,40328851,+,L2b,LINE,L2,3227,3363,-12,40325491,40328863 +6 + chr9 40328881 40329221 chr9,40328881,40329272,+,LTR46,LTR,ERV1,1,460,0,40328881,40329272 +5 + chr9 40498028 40498053 chr9,40498028,40498053,+,(CA)n,Simple_repeat,Simple_repeat,1,25,0,40498028,40498053 +6 + chr9 40505463 40505615 chr9,40505463,40505615,+,L1ME1,LINE,L1,5964,6119,-60,40499500,40505675 -6 + chr9 40505618 40505716 chr9,40505618,40505716,-,FLAM_A,SINE,Alu,-44,98,1,40505574,40505716 +6 - chr9 40505799 40505820 chr9,40505799,40506082,+,AluSg4,SINE,Alu,2,284,-26,40505798,40506108 -2 + chr9 40512553 40512570 chr9,40512553,40512570,+,(AT)n,Simple_repeat,Simple_repeat,1,17,0,40512553,40512570 +6 + chr9 40566334 40566496 chr9,40566302,40566496,-,AluY,SINE,Alu,-8,303,110,40566294,40566605 -2 - chr9 40612251 40612366 chr9,40612251,40612433,+,AluJr,SINE,Alu,1,174,-138,40612251,40612571 -2 + chr9 40614828 40614942 chr9,40614828,40615129,+,AluJb,SINE,Alu,1,305,-7,40614828,40615136 -2 + chr9 40622074 40622155 chr9,40621924,40622530,+,MLT1E2,LTR,ERVL-MaLR,6,627,0,40621919,40622530 -1 + chr9 40776326 40776356 chr9,40776312,40776462,+,LTR37-int,LTR,ERV1,3251,3410,-650,40773062,40777112 +3 + chr9 40799011 40799083 chr9,40798716,40799924,+,ERV3-16A3_I-int,LTR,ERVL,2875,4211,-1015,40795842,40800939 +3 + chr9 40806096 40806240 chr9,40806058,40806240,-,AluSx1,SINE,Alu,0,312,129,40806058,40806368 -2 - chr9 41006999 41007189 chr9,41002301,41007189,-,L1PA3,LINE,L1,-3,6152,1263,41002298,41008451 +5 - chr9 41007186 41007534 chr9,41007186,41007588,+,L1HS,LINE,L1,723,1122,-4910,41006464,41012498 -2 + chr9 41012613 41012765 chr9,41012613,41012765,-,MER112,DNA,hAT-Charlie,0,261,97,41012613,41012861 -6 - chr9 41013189 41013220 chr9,41013189,41013220,+,A-rich,Low_complexity,Low_complexity,1,31,0,41013189,41013220 +6 + chr9 41013768 41014105 chr9,41013768,41014105,+,L1ME3A,LINE,L1,5781,6159,-14,41007988,41014119 +6 + chr9 41025764 41025853 chr9,41025476,41025885,+,MSTC,LTR,ERVL-MaLR,1,428,0,41025476,41025885 -3 + chr9 41062597 41062697 chr9,41062597,41062697,-,L1ME4a,LINE,L1,-240,5884,5777,41062357,41068473 -6 - chr9 41062798 41062917 chr9,41062798,41063104,+,AluJr,SINE,Alu,1,306,-6,41062798,41063110 +5 + chr9 41074527 41074607 chr9,41074527,41074607,+,(CTGCGCC)n,Simple_repeat,Simple_repeat,1,83,0,41074527,41074607 -6 + chr9 41074593 41074617 chr9,41074593,41074644,+,(CGCC)n,Simple_repeat,Simple_repeat,1,52,0,41074593,41074644 -1 + chr9 41076218 41076392 chr9,41076218,41076513,+,L1MA7,LINE,L1,5989,6283,-8,41070230,41076521 +5 + chr9 41100934 41101294 chr9,41100934,41101368,+,MLT1C,LTR,ERVL-MaLR,8,458,-9,41100927,41101377 -5 + chr9 41102925 41103047 chr9,41102925,41103047,+,MER94,DNA,hAT-Blackjack,11,134,0,41102915,41103047 -6 + chr9 41103059 41103293 chr9,41103059,41103293,-,MER20B,DNA,hAT-Charlie,-2,781,563,41103057,41103855 +6 - chr9 41103294 41103744 chr9,41103294,41103744,+,L1MEc,LINE,L1,38,453,-5947,41103257,41109691 -6 + chr9 41103744 41104045 chr9,41103744,41104045,+,AluSc8,SINE,Alu,1,311,0,41103744,41104045 -1 + chr9 41104045 41104085 chr9,41104045,41104085,+,L1MEc,LINE,L1,454,493,-5907,41103592,41109992 -6 + chr9 41104171 41104534 chr9,41104171,41104534,-,SATR1,Satellite,Satellite,-84,362,1,41104087,41104534 +6 - chr9 41104539 41104594 chr9,41104539,41104594,+,LTR5A,LTR,ERVK,1,55,-978,41104539,41105572 -6 + chr9 41104667 41105159 chr9,41104667,41105160,-,SATR1,Satellite,Satellite,-42,502,1,41104625,41105160 +2 - chr9 41106165 41106192 chr9,41105160,41106192,+,LTR5A,LTR,ERVK,1,1033,0,41105160,41106192 -4 + chr9 41106192 41106229 chr9,41106192,41106780,-,SATR1,Satellite,Satellite,-134,583,1,41106058,41106780 +1 - chr9 41276280 41276436 chr9,41275928,41278963,-,L1PBa,LINE,L1,-1654,5208,2140,41274274,41281102 -1 - chr9 41280259 41280338 chr9,41280110,41280338,-,Charlie5,DNA,hAT-Charlie,-95,2529,2299,41280015,41282636 -2 - chr9 41281263 41281371 chr9,41281263,41281371,-,MER20B,DNA,hAT-Charlie,-148,635,522,41281115,41281892 -6 - chr9 41281372 41281388 chr9,41281372,41281388,+,(ATTT)n,Simple_repeat,Simple_repeat,1,56,0,41281372,41281388 +6 + chr9 41281388 41281426 chr9,41281388,41281426,+,(TATTT)n,Simple_repeat,Simple_repeat,1,38,0,41281388,41281426 +6 + chr9 41281431 41281708 chr9,41281431,41281708,-,L1PA6,LINE,L1,0,6154,5878,41281431,41287585 -6 - chr9 41282300 41282524 chr9,41282300,41282524,-,MER20B,DNA,hAT-Charlie,-461,322,92,41281839,41282615 -6 - chr9 41687826 41687930 chr9,41687819,41687930,+,MIRb,SINE,MIR,110,223,-45,41687710,41687975 -4 + chr9 41694357 41694535 chr9,41694319,41694722,-,MLT1J2,LTR,ERVL-MaLR,-20,428,9,41694299,41694730 +5 - chr9 41760824 41761056 chr9,41760824,41761056,+,L2a,LINE,L2,3181,3414,-12,41757644,41761068 +6 + chr9 41761057 41761307 chr9,41761057,41761307,-,AluSz,SINE,Alu,-11,301,1,41761046,41761307 -6 - chr9 41761337 41761486 chr9,41761337,41761486,+,FLAM_C,SINE,Alu,12,220,-82,41761326,41761568 +6 + chr9 41763641 41763762 chr9,41763433,41763867,+,Arthur1B,DNA,hAT-Tip100,706,1183,-42,41762728,41763909 +3 + chr9 41763853 41763867 chr9,41763433,41763867,+,Arthur1B,DNA,hAT-Tip100,706,1183,-42,41762728,41763909 +2 + chr9 41763927 41763972 chr9,41763927,41763972,+,G-rich,Low_complexity,Low_complexity,1,45,0,41763927,41763972 +6 + chr9 42231811 42231836 chr9,42231694,42231972,-,AluY,SINE,Alu,-32,279,1,42231662,42231972 -1 - chr9 42343899 42343925 chr9,42343899,42343945,-,MIR,SINE,MIR,-118,144,96,42343781,42344040 -4 - chr9 42354072 42354454 chr9,42353912,42354477,-,L1MC4,LINE,L1,-140,7902,7265,42353772,42361741 -5 - chr9 42566679 42566733 chr9,42566655,42566733,+,MLT1H1,LTR,ERVL-MaLR,153,213,-342,42566503,42567075 -5 + chr9 42566782 42566894 chr9,42566782,42566894,+,MLT1H1,LTR,ERVL-MaLR,338,453,-116,42566445,42567010 -6 + chr9 42566979 42567076 chr9,42566979,42567076,+,L1M5,LINE,L1,4720,4818,-1328,42562260,42568404 -5 + chr9 42567158 42567353 chr9,42567158,42567353,+,L2a,LINE,L2,3181,3421,-5,42563978,42567358 -6 + chr9 42567445 42567643 chr9,42567445,42567643,-,MIR,SINE,MIR,-51,211,2,42567394,42567644 +6 - chr9 42568370 42568426 chr9,42568370,42568426,+,(CCAGCCC)n,Simple_repeat,Simple_repeat,1,56,0,42568370,42568426 -6 + chr9 42569304 42569353 chr9,42569304,42569520,-,MER90a,LTR,ERV1,-1,613,361,42569303,42569880 +1 - chr9 42579414 42579531 chr9,42579359,42579531,+,HAL1ME,LINE,L1,1555,1738,-727,42577805,42580258 -5 + chr9 42579938 42580042 chr9,42579938,42580370,+,HAL1ME,LINE,L1,1880,2288,-177,42578059,42580547 -2 + chr9 42583266 42583351 chr9,42583168,42583709,+,LTR12F,LTR,ERV1,3,519,0,42583166,42583709 -3 + chr9 42583636 42583709 chr9,42583168,42583709,+,LTR12F,LTR,ERV1,3,519,0,42583166,42583709 -4 + chr9 42583763 42583929 chr9,42583763,42583929,+,L1ME3D,LINE,L1,4835,5000,-1146,42578929,42585075 -6 + chr9 42583993 42584686 chr9,42583993,42584686,+,L1ME3D,LINE,L1,5105,5846,-396,42578889,42585082 -6 + chr9 42584686 42585522 chr9,42584686,42585522,+,L1MC1,LINE,L1,5435,6322,-11,42579252,42585533 -6 + chr9 42585522 42585875 chr9,42585522,42585875,+,L1ME3D,LINE,L1,5847,6241,-1,42579676,42585876 -6 + chr9 42585852 42586504 chr9,42585852,42586504,+,L1M5,LINE,L1,3327,4104,-2042,42582526,42588546 -6 + chr9 42586503 42586534 chr9,42586503,42586909,+,L1M5,LINE,L1,4633,5064,-1082,42581871,42587991 -1 + chr9 42707800 42707830 chr9,42707756,42707830,-,L1M5,LINE,L1,-1437,4709,4633,42706319,42712462 -1 - chr9 42707829 42708451 chr9,42707829,42708451,-,L1M5,LINE,L1,-2042,4104,3375,42705787,42711825 -6 - chr9 42708477 42708808 chr9,42708477,42708808,-,L1ME3D,LINE,L1,-20,6222,5845,42708457,42714652 -6 - chr9 42708808 42709644 chr9,42708808,42709644,-,L1MC1,LINE,L1,-11,6322,5435,42708797,42715078 -6 - chr9 42709644 42710569 chr9,42709644,42710569,-,L1ME3D,LINE,L1,-398,5844,4835,42709246,42715403 -6 - chr9 42710623 42710697 chr9,42710623,42711164,-,LTR12F,LTR,ERV1,0,519,3,42710623,42711166 -4 - chr9 42710980 42711067 chr9,42710623,42711164,-,LTR12F,LTR,ERV1,0,519,3,42710623,42711166 -3 - chr9 42978881 42978980 chr9,42978881,42979029,-,MIR,SINE,MIR,0,262,113,42978881,42979141 -4 - chr9 42981798 42981983 chr9,42981798,42981983,-,MIR3,SINE,MIR,-16,192,5,42981782,42981987 -6 - chr9 42982473 42982569 chr9,42982473,42982867,+,L4_C_Mam,LINE,RTE-X,4520,4922,-216,42977954,42983083 +4 + chr9 42987535 42987625 chr9,42987535,42987625,+,(ACAC)n,Simple_repeat,Simple_repeat,1,92,0,42987535,42987625 +6 + chr9 42988137 42988167 chr9,42988137,42988702,-,Tigger3b,DNA,TcMar-Tigger,-656,575,1,42987481,42988702 -5 - chr9 60927646 60927822 chr9,60927646,60927965,+,AluY,SINE,Alu,1,311,0,60927646,60927965 -1 + chr9 60935239 60935322 chr9,60934952,60935368,-,LOR1b,LTR,ERV1,0,461,50,60934952,60935417 -3 - chr9 60935770 60936073 chr9,60935770,60936073,+,AluSx4,SINE,Alu,1,303,-7,60935770,60936080 +6 + chr9 60936073 60936745 chr9,60936073,60936745,+,L1ME1,LINE,L1,5465,6179,0,60930609,60936745 +6 + chr9 60955252 60955550 chr9,60955251,60955550,-,AluSc,SINE,Alu,-11,298,1,60955240,60955550 +5 - chr9 60963842 60963998 chr9,60963766,60963998,-,MLT1C,LTR,ERVL-MaLR,0,467,215,60963766,60964212 +4 - chr9 61203270 61203446 chr9,61203270,61203589,+,AluY,SINE,Alu,1,311,0,61203270,61203589 -1 + chr9 61229987 61230019 chr9,61229987,61230019,+,(TAA)n,Simple_repeat,Simple_repeat,1,34,0,61229987,61230019 -6 + chr9 61230619 61230919 chr9,61230619,61230919,-,AluSc,SINE,Alu,-10,299,1,61230609,61230919 +6 - chr9 61230965 61230975 chr9,61230965,61231010,-,MLT1K,LTR,ERVL-MaLR,-6,589,545,61230959,61231554 +2 - chr9 61620298 61620401 chr9,61620298,61620465,+,MLT1J2,LTR,ERVL-MaLR,257,428,-20,61620042,61620485 +4 + chr9 61626863 61626968 chr9,61626863,61626974,-,MIRb,SINE,MIR,-45,223,110,61626818,61627083 -4 - chr9 61662293 61662323 chr9,61662293,61662323,+,(AAG)n,Simple_repeat,Simple_repeat,1,30,0,61662293,61662323 +6 + chr9 61868756 61868774 chr9,61868756,61868790,+,A-rich,Low_complexity,Low_complexity,1,35,0,61868756,61868790 +4 + chr9 61886671 61886821 chr9,61886671,61886821,+,L2b,LINE,L2,2458,2616,-803,61884214,61887624 +6 + chr9 61886812 61886923 chr9,61886812,61886923,-,L2b,LINE,L2,-10,3365,3250,61886802,61890172 -6 - chr9 61899520 61899624 chr9,61899513,61899624,+,MIRb,SINE,MIR,110,223,-45,61899404,61899669 -4 + chr9 61906374 61906555 chr9,61906339,61906742,-,MLT1J2,LTR,ERVL-MaLR,-20,428,9,61906319,61906750 +5 - chr9 61972976 61973208 chr9,61972976,61973208,+,L2a,LINE,L2,3181,3414,-12,61969796,61973220 +6 + chr9 61973209 61973459 chr9,61973209,61973459,-,AluSz,SINE,Alu,-11,301,1,61973198,61973459 -6 - chr9 61973489 61973638 chr9,61973489,61973638,+,FLAM_C,SINE,Alu,12,220,-82,61973478,61973720 +6 + chr9 61973665 61973679 chr9,61973665,61974412,-,L1M5,LINE,L1,-1492,4654,3855,61972173,61978266 -5 - chr9 61975791 61975912 chr9,61975583,61976017,+,Arthur1B,DNA,hAT-Tip100,706,1183,-42,61974878,61976059 +3 + chr9 61976003 61976017 chr9,61975583,61976017,+,Arthur1B,DNA,hAT-Tip100,706,1183,-42,61974878,61976059 +2 + chr9 61976077 61976122 chr9,61976077,61976122,+,G-rich,Low_complexity,Low_complexity,1,45,0,61976077,61976122 +6 + chr9 62028426 62028527 chr9,62028018,62028837,-,L1MB5,LINE,L1,-4138,3427,2565,62023880,62031401 -1 - chr9 62076095 62076245 chr9,62076095,62076245,+,L1M2,LINE,L1,4141,4291,-1852,62071955,62078097 +6 + chr9 62076246 62076318 chr9,62076246,62076318,+,L1MA5A,LINE,L1,6226,6297,0,62070021,62076318 +6 + chr9 62349941 62350247 chr9,62349874,62350302,-,MER77,LTR,ERVL,-6,598,161,62349868,62350462 +5 - chr9 62350470 62350524 chr9,62350322,62350524,-,MER77,LTR,ERVL,-379,225,4,62349943,62350527 +4 - chr9 62374128 62374202 chr9,62374120,62374202,+,MLT1H,LTR,ERVL-MaLR,155,213,-342,62373966,62374544 -5 + chr9 62374249 62374364 chr9,62374249,62374364,+,MLT1H,LTR,ERVL-MaLR,278,454,-115,62373972,62374479 -6 + chr9 62374448 62374545 chr9,62374448,62374545,+,L1M5,LINE,L1,4720,4818,-1328,62369729,62375873 -5 + chr9 62374661 62374822 chr9,62374661,62374822,+,L2a,LINE,L2,3234,3421,-5,62371428,62374827 -6 + chr9 62374925 62375112 chr9,62374925,62375112,-,MIR,SINE,MIR,-62,200,2,62374863,62375113 +6 - chr9 62375838 62375894 chr9,62375838,62375894,+,(CCAGCCC)n,Simple_repeat,Simple_repeat,1,56,0,62375838,62375894 -6 + chr9 62376600 62376639 chr9,62376600,62376639,+,MIRb,SINE,MIR,118,156,-112,62376483,62376751 -6 + chr9 62376774 62376836 chr9,62376774,62377000,-,MER90,LTR,ERV1,-1,574,322,62376773,62377321 +1 - chr9 62387406 62387510 chr9,62387406,62387740,+,HAL1ME,LINE,L1,1880,2213,-252,62385527,62387992 -2 + chr9 62390736 62390821 chr9,62390638,62391179,+,LTR12F,LTR,ERV1,3,519,0,62390636,62391179 -3 + chr9 62391106 62391179 chr9,62390638,62391179,+,LTR12F,LTR,ERV1,3,519,0,62390636,62391179 -4 + chr9 62391463 62392156 chr9,62391463,62392156,+,L1ME3D,LINE,L1,5105,5846,-396,62386359,62392552 -6 + chr9 62392156 62392992 chr9,62392156,62392992,+,L1MC1,LINE,L1,5435,6322,-11,62386722,62393003 -6 + chr9 62392992 62393345 chr9,62392992,62393345,+,L1ME3D,LINE,L1,5847,6241,-1,62387146,62393346 -6 + chr9 62393352 62393974 chr9,62393352,62393974,+,L1M5,LINE,L1,3375,4104,-2042,62389978,62396016 -6 + chr9 62393974 62394004 chr9,62393974,62394130,+,L1M5,LINE,L1,4634,4778,-1368,62389341,62395498 -1 + chr9 62515191 62515221 chr9,62514815,62515221,-,L1M5,LINE,L1,-1082,5064,4633,62513733,62519853 -1 - chr9 62515220 62515872 chr9,62515220,62515872,-,L1M5,LINE,L1,-2042,4104,3327,62513178,62519198 -6 - chr9 62515849 62516202 chr9,62515849,62516202,-,L1ME3D,LINE,L1,-1,6241,5847,62515848,62522048 -6 - chr9 62516202 62517034 chr9,62516202,62517034,-,L1MC1,LINE,L1,-11,6322,5435,62516191,62522468 -6 - chr9 62517034 62517727 chr9,62517034,62517727,-,L1ME3D,LINE,L1,-396,5846,5105,62516638,62522831 -6 - chr9 62517791 62517957 chr9,62517791,62517957,-,L1ME3D,LINE,L1,-1146,5000,4835,62516645,62522791 -6 - chr9 62518011 62518085 chr9,62518011,62518552,-,LTR12F,LTR,ERV1,0,519,3,62518011,62518554 -4 - chr9 62518370 62518455 chr9,62518011,62518552,-,LTR12F,LTR,ERV1,0,519,3,62518011,62518554 -3 - chr9 62521679 62521782 chr9,62521386,62521782,-,HAL1ME,LINE,L1,-179,2286,1880,62521207,62523661 -2 - chr9 62532337 62532412 chr9,62532196,62532412,+,MER90a,LTR,ERV1,361,613,-1,62531836,62532413 +1 + chr9 62532497 62532585 chr9,62532497,62532585,-,MIRc,SINE,MIR,-73,195,115,62532424,62532699 -6 - chr9 62533290 62533346 chr9,62533290,62533346,+,G-rich,Low_complexity,Low_complexity,1,56,0,62533290,62533346 +6 + chr9 62534073 62534271 chr9,62534073,62534271,+,MIR,SINE,MIR,2,211,-51,62534072,62534322 +6 + chr9 62534363 62534558 chr9,62534363,62534558,-,L2a,LINE,L2,-5,3421,3181,62534358,62537738 -6 - chr9 62534640 62534724 chr9,62534640,62534737,-,L1M5,LINE,L1,-1328,4818,4720,62533312,62539456 -5 - chr9 62801461 62801506 chr9,62801309,62801506,+,GA-rich,Low_complexity,Low_complexity,1,200,0,62801309,62801506 +1 + chr9 62803984 62804140 chr9,62802819,62804690,-,L1M1,LINE,L1,-4311,3254,1477,62798508,62806166 -3 - chr9 62806311 62806333 chr9,62804663,62806948,-,L1PREC2,LINE,L1,-811,5350,3016,62803852,62809963 -5 - chr9 62809768 62809785 chr9,62809270,62809785,-,L1PB4,LINE,L1,-12,6144,5620,62809258,62815404 -2 - chr9 62810041 62810138 chr9,62810041,62810138,+,L2a,LINE,L2,3326,3426,0,62806716,62810138 +6 + chr9 62810353 62810882 chr9,62810353,62810882,+,LTR6A,LTR,ERV1,1,564,0,62810353,62810882 +6 + chr9 62811579 62811589 chr9,62811579,62811666,+,L2c,LINE,L2,3297,3387,0,62808283,62811666 +4 + chr9 62812793 62813196 chr9,62812791,62813196,-,MLT1H1,LTR,ERVL-MaLR,-125,423,1,62812666,62813196 -2 - chr9 62865597 62865713 chr9,62865566,62865713,-,L1M6B,LINE,L1,-148,221,69,62865418,62865781 +5 - chr9 62867752 62867981 chr9,62867752,62867981,+,L4_A_Mam,LINE,RTE-X,4260,4499,-491,62863493,62868472 -6 + chr9 62869340 62869448 chr9,62869340,62869448,-,Charlie24,DNA,hAT-Charlie,-2333,117,2,62867007,62869449 +6 - chr9 62869708 62869868 chr9,62869708,62869949,-,Charlie8,DNA,hAT-Charlie,-1989,439,203,62867719,62870151 +1 - chr9 62876550 62876614 chr9,62876145,62876891,-,L1MC2,LINE,L1,-9,6335,5559,62876136,62882449 +1 - chr9 62897419 62897457 chr9,62897231,62897457,+,MER90,LTR,ERV1,322,574,-1,62896910,62897458 -1 + chr9 62897543 62897631 chr9,62897543,62897631,-,MIRb,SINE,MIR,-73,195,115,62897470,62897745 -6 - chr9 62897543 62897631 chr9,62897543,62897631,-,MIRb,SINE,MIR,-73,195,115,62897470,62897745 +6 - chr9 62898337 62898393 chr9,62898337,62898393,+,G-rich,Low_complexity,Low_complexity,1,56,0,62898337,62898393 +6 + chr9 62899119 62899306 chr9,62899119,62899306,+,MIR,SINE,MIR,2,200,-62,62899118,62899368 +6 + chr9 62899409 62899570 chr9,62899409,62899570,-,L2a,LINE,L2,-5,3421,3234,62899404,62902803 -6 - chr9 62899686 62899783 chr9,62899686,62899783,-,L1M5,LINE,L1,-1328,4818,4720,62898358,62904502 -5 - chr9 62899867 62899982 chr9,62899867,62899982,-,MLT1H1,LTR,ERVL-MaLR,-115,454,278,62899752,62900259 -6 - chr9 62900084 62900104 chr9,62900084,62900108,+,(A)n,Simple_repeat,Simple_repeat,1,24,0,62900084,62900108 +5 + chr9 63124636 63124873 chr9,63124571,63124873,+,AluSx,SINE,Alu,1,304,-8,63124571,63124881 -4 + chr9 63126896 63126921 chr9,63126896,63126921,+,(GT)n,Simple_repeat,Simple_repeat,1,25,0,63126896,63126921 -6 + chr9 63802492 63802804 chr9,63802492,63802804,+,MLT1H1,LTR,ERVL-MaLR,44,407,-162,63802449,63802966 -6 + chr9 63804747 63805276 chr9,63804747,63805276,-,LTR6A,LTR,ERV1,0,564,1,63804747,63805276 +6 - chr9 63805490 63805568 chr9,63805490,63805568,-,L2a,LINE,L2,0,3426,3294,63805490,63808861 +6 - chr9 63805843 63805861 chr9,63805843,63806358,+,L1PB4,LINE,L1,5620,6144,-12,63800224,63806370 -2 + chr9 63811491 63811647 chr9,63810942,63812812,+,L1M1,LINE,L1,1477,3255,-4310,63809466,63817122 -3 + chr9 63814117 63814159 chr9,63814117,63814302,+,(CT)n,Simple_repeat,Simple_repeat,1,188,0,63814117,63814302 -1 + chr9 66014525 66014563 chr9,66013979,66014563,+,Tigger3b,DNA,TcMar-Tigger,1,593,-638,66013979,66015201 -5 + chr9 66015069 66015160 chr9,66015069,66015160,+,(GTGT)n,Simple_repeat,Simple_repeat,1,94,0,66015069,66015160 -6 + chr9 66020016 66020115 chr9,66019717,66020115,-,L4_C_Mam,LINE,RTE-X,-216,4922,4515,66019501,66024629 +4 - chr9 66020601 66020786 chr9,66020601,66020786,+,MIR3,SINE,MIR,5,192,-16,66020597,66020802 -6 + chr9 66047084 66047423 chr9,66047032,66047423,-,LTR46,LTR,ERV1,0,460,1,66047032,66047423 +5 - chr9 66047466 66047587 chr9,66047466,66047587,-,L2b,LINE,L2,-25,3350,3227,66047441,66050813 +6 - chr9 66047863 66048159 chr9,66047863,66048159,-,AluY,SINE,Alu,-14,297,2,66047849,66048160 +6 - chr9 66048250 66048469 chr9,66048250,66048469,+,MIR,SINE,MIR,15,262,0,66048236,66048469 -6 + chr9 66048625 66048731 chr9,66048625,66048731,+,MIR,SINE,MIR,35,140,-122,66048591,66048853 -6 + chr9 66048782 66048863 chr9,66048782,66048863,-,LTR16C,LTR,ERVL,0,489,407,66048782,66049269 +6 - chr9 66048868 66049180 chr9,66048868,66049180,-,LTR16C,LTR,ERVL,-43,446,128,66048825,66049307 +6 - chr9 66049260 66049348 chr9,66049260,66049348,+,(ACAC)n,Simple_repeat,Simple_repeat,1,88,0,66049260,66049348 -6 + chr9 66049523 66049691 chr9,66049523,66049691,-,MIRb,SINE,MIR,-56,212,35,66049467,66049725 +6 - chr9 66054016 66054110 chr9,66054016,66054110,+,HSAT5,Satellite,Satellite,1,92,0,66054016,66054110 -6 + chr9 66054333 66054437 chr9,66054333,66054437,+,HSAT5,Satellite,Satellite,1,96,-3,66054333,66054440 -6 + chr9 66054711 66054780 chr9,66054711,66054780,+,HSAT5,Satellite,Satellite,9,78,-8,66054703,66054788 -6 + chr9 66054778 66054927 chr9,66054778,66054927,-,MSTA,LTR,ERVL-MaLR,-154,274,123,66054624,66055049 +6 - chr9 66054949 66055006 chr9,66054949,66055192,+,THE1D-int,LTR,ERVL-MaLR,955,1236,-395,66053995,66055587 -1 + chr9 66159954 66159969 chr9,66159682,66159969,+,MER21C,LTR,ERVL,607,900,-38,66159076,66160007 -5 + chr9 66164559 66164946 chr9,66164559,66164946,-,LOR1b,LTR,ERV1,0,461,1,66164559,66164946 +1 - chr9 66179286 66179430 chr9,66178693,66180010,+,REP522,Satellite,telo,1,1343,-474,66178693,66180484 -1 + chr9 66942889 66943046 chr9,66942889,66943121,+,MLT1C,LTR,ERVL-MaLR,215,467,0,66942675,66943121 +4 + chr9 66951337 66951637 chr9,66951337,66951637,+,AluSc,SINE,Alu,1,299,-10,66951337,66951647 +5 + chr9 66952237 66952269 chr9,66952237,66952269,+,(TTA)n,Simple_repeat,Simple_repeat,1,34,0,66952237,66952269 +6 + chr9 66979132 66979307 chr9,66978988,66979307,-,AluY,SINE,Alu,0,311,1,66978988,66979307 -1 - chr9 67512064 67512136 chr9,67512064,67512136,-,L1MA5A,LINE,L1,0,6297,6226,67512064,67518361 +6 - chr9 67512137 67512287 chr9,67512137,67512287,-,L1M2,LINE,L1,-1852,4291,4141,67510285,67516427 +6 - chr9 68250469 68250566 chr9,68250291,68250566,+,AluSz,SINE,Alu,1,275,-37,68250291,68250603 -5 + chr9 68250570 68250629 chr9,68250570,68250629,+,(AC)n,Simple_repeat,Simple_repeat,1,59,0,68250570,68250629 -6 + chr9 68250667 68250823 chr9,68250667,68250823,+,MER5A,DNA,hAT-Charlie,4,166,-23,68250664,68250846 -6 + chr9 68250827 68250942 chr9,68250827,68250942,-,Tigger1,DNA,TcMar-Tigger,0,2418,2304,68250827,68253245 +6 - chr9 68250946 68251103 chr9,68250946,68251103,+,AluJo,SINE,Alu,134,305,-7,68250813,68251110 -6 + chr9 68251103 68251656 chr9,68251103,68252409,-,Tigger1,DNA,TcMar-Tigger,-109,2309,972,68250994,68253380 +1 - chr9 68306972 68307089 chr9,68306972,68307089,-,MIR,SINE,MIR,-70,192,75,68306902,68307163 -6 - chr9 68311692 68311842 chr9,68311646,68311942,-,L2b,LINE,L2,-1,3374,3073,68311645,68315014 -3 - chr9 68322848 68322946 chr9,68322848,68323129,+,SATR1,Satellite,Satellite,1,274,-84,68322848,68323213 +4 + chr9 68323027 68323129 chr9,68322848,68323129,+,SATR1,Satellite,Satellite,1,274,-84,68322848,68323213 +2 + chr9 68323225 68323825 chr9,68323225,68323827,-,HERVE-int,LTR,ERV1,-3967,3846,3250,68319258,68327076 -1 - chr9 68325034 68325229 chr9,68324641,68325229,+,SATR1,Satellite,Satellite,1,593,0,68324641,68325229 +2 + chr9 68325229 68325257 chr9,68325229,68326261,-,LTR5A,LTR,ERVK,0,1033,1,68325229,68326261 -4 - chr9 68326263 68326754 chr9,68326261,68326754,+,SATR1,Satellite,Satellite,1,500,-54,68326261,68326808 +2 + chr9 68326827 68326882 chr9,68326827,68326882,-,LTR5A,LTR,ERVK,-978,55,1,68325849,68326882 -6 - chr9 68326887 68327250 chr9,68326887,68327250,+,SATR1,Satellite,Satellite,1,362,-65,68326887,68327315 +6 + chr9 68327336 68327376 chr9,68327336,68327376,-,L1MEc,LINE,L1,-5907,493,454,68321429,68327829 -6 - chr9 68327376 68327676 chr9,68327376,68327676,-,AluSc8,SINE,Alu,-1,310,1,68327375,68327676 -6 - chr9 68327676 68328126 chr9,68327676,68328126,-,L1MEc,LINE,L1,-5947,453,38,68321729,68328163 -6 - chr9 68328127 68328361 chr9,68328127,68328361,+,MER20B,DNA,hAT-Charlie,563,781,-2,68327565,68328363 +6 + chr9 68328373 68328495 chr9,68328373,68328495,-,MER94,DNA,hAT-Blackjack,0,134,11,68328373,68328505 -6 - chr9 68330126 68330485 chr9,68330042,68330485,-,MLT1C,LTR,ERVL-MaLR,0,467,8,68330042,68330492 -5 - chr9 68355189 68355362 chr9,68355067,68355362,-,L1MA7,LINE,L1,-8,6283,5989,68355059,68361350 +5 - chr9 68395693 68395745 chr9,68394922,68395745,-,L1M5,LINE,L1,-945,5201,4339,68393977,68400083 +5 - chr9 68396094 68396303 chr9,68396094,68396303,-,MIRc,SINE,MIR,-12,256,46,68396082,68396348 +6 - chr9 68397567 68397826 chr9,68397567,68397826,-,L2c,LINE,L2,0,3426,3108,68397567,68400933 +6 - chr9 68398443 68398689 chr9,68398298,68398709,-,LTR33,LTR,ERVL,-4,511,52,68398294,68398760 +3 - chr9 68399083 68399271 chr9,68398829,68399709,-,L1ME5,LINE,L1,-10,6184,5258,68398819,68404966 +1 - chr9 68406303 68406500 chr9,68406222,68406631,-,MSTC,LTR,ERVL-MaLR,0,428,1,68406222,68406631 +1 - chr9 68426870 68426959 chr9,68426870,68426979,+,L2c,LINE,L2,3275,3382,-5,68423596,68426984 +4 + chr9 68428582 68428613 chr9,68428562,68428613,+,X6B_LINE,LINE,CR1,1010,1060,-12,68427553,68428625 +2 + chr9 68428917 68429029 chr9,68428917,68429029,+,MIR,SINE,MIR,43,154,-114,68428875,68429143 +6 + chr9 68429134 68429221 chr9,68429134,68429221,+,MIR,SINE,MIR,172,260,-2,68428963,68429223 +6 + chr9 68429341 68429369 chr9,68429341,68429406,+,(CAAT)n,Simple_repeat,Simple_repeat,1,66,0,68429341,68429406 +5 + chr9 68542378 68542642 chr9,68542201,68542693,+,MLT1F2,LTR,ERVL-MaLR,15,500,-60,68542187,68542753 +3 + chr9 68546085 68546116 chr9,68546085,68546404,+,AluY,SINE,Alu,1,311,0,68546085,68546404 -1 + chr9 68644026 68644234 chr9,68644026,68644234,-,Helitron2Na_Mam,RC?,Helitron?,-35,289,72,68643991,68644305 -6 - chr9 68824231 68824290 chr9,68824231,68824334,+,L3,LINE,CR1,1789,1902,-2197,68822443,68826531 -2 + chr9 69296684 69296714 chr9,69296684,69296714,+,(T)n,Simple_repeat,Simple_repeat,1,30,0,69296684,69296714 -5 + chr9 69296773 69296867 chr9,69296773,69297088,-,L4_A_Mam,LINE,RTE-X,-132,4858,4478,69296641,69301565 +2 - chr9 69304936 69305077 chr9,69304826,69305243,-,MER41-int,LTR,ERV1,-255,5691,5266,69304571,69310508 +3 - chr9 69306148 69306161 chr9,69305474,69306161,-,MER41-int,LTR,ERV1,-4788,2630,1324,69300686,69307484 +4 - chr9 69306163 69306295 chr9,69306163,69306938,-,MER41-int,LTR,ERV1,-5144,802,1,69301019,69306938 +1 - chr9 69306854 69306938 chr9,69306163,69306938,-,MER41-int,LTR,ERV1,-5144,802,1,69301019,69306938 +1 - chr9 69306938 69306977 chr9,69306938,69307567,-,MER41B,LTR,ERV1,0,634,1,69306938,69307567 +1 - chr9 69474283 69474352 chr9,69474283,69474506,+,MIRb,SINE,MIR,26,262,-6,69474258,69474512 +4 + chr9 69494482 69494513 chr9,69494482,69494514,+,(AATA)n,Simple_repeat,Simple_repeat,1,32,0,69494482,69494514 +5 + chr9 69673619 69673713 chr9,69673619,69673768,-,Charlie16a,DNA,hAT-Charlie,-123,219,66,69673496,69673833 -5 - chr9 69820149 69820267 chr9,69820149,69820430,+,AluSz,SINE,Alu,1,276,-36,69820149,69820466 -2 + chr9 70086554 70086715 chr9,70086554,70086715,-,MamSINE1,SINE,tRNA-RTE,-98,192,44,70086456,70086758 +6 - chr9 70086996 70087138 chr9,70086996,70087138,-,MIR3,SINE,MIR,-53,155,3,70086943,70087140 +6 - chr9 70087204 70087630 chr9,70087204,70087786,-,MLT1K,LTR,ERVL-MaLR,0,595,1,70087204,70087786 +5 - chr9 70088396 70088513 chr9,70088396,70088513,+,MIR3,SINE,MIR,29,154,-54,70088368,70088567 -6 + chr9 70088544 70088847 chr9,70088544,70088847,+,MER113A,DNA,hAT-Charlie,2,310,-4,70088543,70088851 -6 + chr9 70088928 70089175 chr9,70088928,70089175,-,MIRb,SINE,MIR,-16,252,5,70088912,70089179 +6 - chr9 70090606 70090790 chr9,70090502,70091122,+,L1ME4b,LINE,L1,142,753,-139,70090361,70091261 -3 + chr9 70092286 70092329 chr9,70092286,70092329,+,MER5B,DNA,hAT-Charlie,135,178,0,70092152,70092329 -6 + chr9 70106007 70106042 chr9,70106007,70106179,+,MER5A,DNA,hAT-Charlie,1,184,-5,70106007,70106184 -2 + chr9 70153836 70154100 chr9,70153836,70154100,-,MER103C,DNA,hAT-Charlie,0,297,44,70153836,70154143 +6 - chr9 70154100 70154229 chr9,70154100,70154229,+,L2c,LINE,L2,3213,3347,-40,70150888,70154269 -6 + chr9 70169838 70170009 chr9,70169838,70170009,-,MIR,SINE,MIR,-6,262,78,70169832,70170086 +6 - chr9 70171060 70171124 chr9,70171060,70171207,+,Zaphod3,DNA,hAT-Tip100,29,171,-2452,70171032,70173659 -2 + chr9 70175755 70175888 chr9,70175682,70176053,-,MLT1B,LTR,ERVL-MaLR,-5,385,6,70175677,70176058 +1 - chr9 70194159 70194264 chr9,70194159,70194264,+,MIRc,SINE,MIR,65,168,-100,70194095,70194364 -6 + chr9 70194264 70194555 chr9,70194264,70194629,+,MLT1A0,LTR,ERVL-MaLR,1,359,-6,70194264,70194635 -2 + chr9 70216286 70216421 chr9,70216223,70216609,-,MLT1A,LTR,ERVL-MaLR,-7,367,6,70216216,70216614 +3 - chr9 70257915 70258069 chr9,70257618,70258069,-,LTR24,LTR,ERV1,0,467,1,70257618,70258069 +4 - chr9 70258069 70258162 chr9,70258069,70258162,+,L2a,LINE,L2,3222,3318,-108,70254848,70258270 -6 + chr9 70310875 70311612 chr9,70310147,70311612,-,Tigger1,DNA,TcMar-Tigger,-857,1561,57,70309290,70311668 -1 - chr9 70311612 70311701 chr9,70311612,70311701,-,HY4,scRNA,scRNA,-3,90,1,70311609,70311701 -6 - chr9 70311701 70311779 chr9,70311701,70311779,-,Tigger1,DNA,TcMar-Tigger,-2362,56,2,70309339,70311780 -6 - chr9 70311779 70311930 chr9,70311779,70311930,-,L1MEb,LINE,L1,-1882,4264,4103,70309897,70316032 -6 - chr9 70311931 70311971 chr9,70311931,70311971,-,THE1D,LTR,ERVL-MaLR,0,381,342,70311931,70312312 -6 - chr9 70311972 70312120 chr9,70311972,70312148,+,AluSz6,SINE,Alu,133,310,-2,70311840,70312150 +5 + chr9 72257650 72257783 chr9,72257650,72257948,+,AluJb,SINE,Alu,12,299,-13,72257639,72257961 +5 + chr9 72328664 72328721 chr9,72328554,72328777,-,MIR,SINE,MIR,-3,259,20,72328551,72328796 -3 - chr9 72335392 72335497 chr9,72335360,72335664,-,AluSx1,SINE,Alu,-2,310,3,72335358,72335666 -3 - chr9 72341592 72341848 chr9,72341505,72341848,-,MLT1A0,LTR,ERVL-MaLR,0,365,1,72341505,72341848 -2 - chr9 72342443 72342661 chr9,72342443,72342661,-,MIRb,SINE,MIR,-23,245,17,72342420,72342677 -6 - chr9 72342902 72343057 chr9,72342902,72343057,-,Tigger19b,DNA,TcMar-Tigger,-64,486,315,72342838,72343371 -6 - chr9 72343101 72343161 chr9,72343101,72343161,-,Tigger19b,DNA,TcMar-Tigger,-329,221,157,72342772,72343317 -6 - chr9 72871976 72872020 chr9,72871976,72872052,-,MLT1M,LTR,ERVL-MaLR,-8,664,587,72871968,72872638 +2 - chr9 72872183 72872231 chr9,72872183,72872476,-,L2c,LINE,L2,0,3387,3066,72872183,72875541 +2 - chr9 72874016 72874109 chr9,72873937,72874322,-,MSTA,LTR,ERVL-MaLR,0,428,1,72873937,72874322 +1 - chr9 73579189 73579305 chr9,73579174,73579305,-,MIR3,SINE,MIR,-61,147,19,73579113,73579323 -2 - chr9 74371531 74371754 chr9,74371412,74371838,+,MLT1L,LTR,ERVL-MaLR,74,610,0,74371339,74371838 +1 + chr9 74372246 74372487 chr9,74372246,74372696,-,LTR16D,LTR,ERVL,-10,641,140,74372236,74372835 -4 - chr9 74383423 74383466 chr9,74383359,74383466,-,MIRc,SINE,MIR,-127,141,34,74383232,74383499 -2 - chr9 74485551 74485680 chr9,74485411,74485698,+,AluSg,SINE,Alu,1,289,-21,74485411,74485719 -5 + chr9 74498817 74498840 chr9,74498817,74498840,+,(GGC)n,Simple_repeat,Simple_repeat,1,23,0,74498817,74498840 -6 + chr9 74975893 74975959 chr9,74975893,74976103,+,HERVL40-int,LTR,ERVL,924,1146,-4384,74974970,74980487 +4 + chr9 74991165 74991285 chr9,74991139,74991439,-,AluSc,SINE,Alu,-8,301,1,74991131,74991439 -3 - chr9 75009828 75009998 chr9,75009735,75009998,+,L1MCc,LINE,L1,1252,1524,-4899,75008484,75014897 -5 + chr9 75010116 75010205 chr9,75010116,75010424,-,AluSq2,SINE,Alu,-1,312,1,75010115,75010424 +2 - chr9 75015745 75015787 chr9,75015503,75015787,+,AluSz,SINE,Alu,1,286,-26,75015503,75015813 -4 + chr9 75015787 75015823 chr9,75015787,75015823,+,(AAAT)n,Simple_repeat,Simple_repeat,1,36,0,75015787,75015823 -6 + chr9 75015830 75015903 chr9,75015830,75015903,+,Charlie4a,DNA,hAT-Charlie,440,508,0,75015391,75015903 -6 + chr9 75579669 75579690 chr9,75579522,75579690,-,MSTA,LTR,ERVL-MaLR,-259,169,1,75579263,75579690 -1 - chr9 75579744 75579802 chr9,75579744,75579802,+,MamRTE1,LINE,RTE-BovB,3663,3720,-92,75576082,75579894 +6 + chr9 75588229 75588450 chr9,75588193,75588450,-,Charlie2b,DNA,hAT-Charlie,-2460,322,27,75585733,75588476 -2 - chr9 76764436 76764555 chr9,76764268,76765513,-,L2a,LINE,L2,-149,3277,1890,76764119,76767402 -1 - chr9 76784395 76784558 chr9,76784395,76784558,+,MIR3,SINE,MIR,3,193,-15,76784393,76784573 +6 + chr9 76784831 76784988 chr9,76784831,76784988,-,CR1_Mam,LINE,CR1,-560,1644,1487,76784271,76786474 -6 - chr9 76785039 76785228 chr9,76785039,76785228,+,L2b,LINE,L2,2873,3085,-290,76782167,76785518 +6 + chr9 76785221 76785389 chr9,76785221,76785389,+,X7C_LINE,LINE,CR1,6,177,-59,76785216,76785448 +6 + chr9 76785733 76785760 chr9,76785733,76785760,+,(TG)n,Simple_repeat,Simple_repeat,1,27,0,76785733,76785760 +6 + chr9 76786638 76786852 chr9,76786638,76786852,+,L2c,LINE,L2,2332,2523,-896,76784307,76787748 +6 + chr9 76787256 76787362 chr9,76787256,76787362,+,(TTA)n,Simple_repeat,Simple_repeat,1,114,0,76787256,76787362 +6 + chr9 76787384 76787565 chr9,76787384,76787565,+,L1PA8,LINE,L1,5989,6169,-3,76781396,76787568 +6 + chr9 77526501 77526697 chr9,77526352,77526808,+,MLT1C,LTR,ERVL-MaLR,7,467,0,77526346,77526808 +5 + chr9 79135643 79135799 chr9,79135643,79135799,-,MIR1_Amn,SINE,MIR,-75,155,1,79135568,79135799 +6 - chr9 79135983 79136036 chr9,79135983,79136036,-,OldhAT1,DNA,hAT-Ac,-2531,317,254,79133452,79136289 +6 - chr9 79136356 79136399 chr9,79136356,79136399,+,(ATATGT)n,Simple_repeat,Simple_repeat,1,43,0,79136356,79136399 -6 + chr9 79136525 79136564 chr9,79136525,79136564,+,(ATATAG)n,Simple_repeat,Simple_repeat,1,40,0,79136525,79136564 -6 + chr9 79136743 79136911 chr9,79136743,79136911,+,MER5A,DNA,hAT-Charlie,2,188,-1,79136742,79136912 -6 + chr9 79138590 79138710 chr9,79138590,79138773,+,MIR,SINE,MIR,1,198,-64,79138590,79138837 -2 + chr9 79138823 79138960 chr9,79138823,79138960,+,L2c,LINE,L2,3243,3375,-12,79135581,79138972 -6 + chr9 79145500 79145530 chr9,79145500,79145530,+,(TTC)n,Simple_repeat,Simple_repeat,1,31,0,79145500,79145530 -6 + chr9 79516886 79516911 chr9,79516886,79516911,+,(AAAAG)n,Simple_repeat,Simple_repeat,1,25,0,79516886,79516911 -6 + chr9 79517406 79517658 chr9,79517406,79517658,+,AluYm1,SINE,Alu,1,252,-59,79517406,79517717 -6 + chr9 79527610 79527864 chr9,79527589,79527901,+,AluSc,SINE,Alu,3,309,0,79527587,79527901 -3 + chr9 79889001 79889062 chr9,79887841,79889062,-,ERVL-E-int,LTR,ERVL,-4239,1428,135,79883602,79889196 -1 - chr9 79889074 79889304 chr9,79889074,79889304,-,L2a,LINE,L2,-2,3424,3175,79889072,79892478 -6 - chr9 79889953 79890002 chr9,79889953,79890002,+,(GTTGAT)n,Simple_repeat,Simple_repeat,1,51,0,79889953,79890002 +6 + chr9 79890301 79890363 chr9,79890301,79890363,+,(ATGATA)n,Simple_repeat,Simple_repeat,1,65,0,79890301,79890363 +6 + chr9 79890575 79890638 chr9,79890575,79890638,-,L2c,LINE,L2,-3,3423,3359,79890572,79893996 -6 - chr9 79891675 79892007 chr9,79891675,79892051,+,MLT1B,LTR,ERVL-MaLR,3,390,0,79891673,79892051 +5 + chr9 79913371 79913840 chr9,79913371,79913840,+,MER4A1,LTR,ERV1,1,472,0,79913371,79913840 +6 + chr9 79914297 79914392 chr9,79914297,79914392,-,LTR33C,LTR,ERVL,-500,129,36,79913797,79914427 -6 - chr9 79914454 79914683 chr9,79914454,79914683,-,L2a,LINE,L2,-284,3142,2914,79914170,79917596 -6 - chr9 79914745 79914993 chr9,79914745,79914993,+,LTR88a,LTR,Gypsy?,239,496,-320,79914507,79915313 +6 + chr9 79915598 79915736 chr9,79915598,79915773,+,LTR16C,LTR,ERVL,300,479,-10,79915299,79915783 +5 + chr9 79975023 79975069 chr9,79974937,79975069,-,LTR33B,LTR,ERVL,-39,464,328,79974898,79975396 -1 - chr9 79975120 79975222 chr9,79975120,79975319,-,LTR33B,LTR,ERVL,-288,215,3,79974832,79975321 -4 - chr9 80871173 80871295 chr9,80871153,80871317,+,AluJo,SINE,Alu,139,302,-10,80871015,80871327 -1 + chr9 81689771 81689844 chr9,81689771,81689844,+,(TCTCC)n,Simple_repeat,Simple_repeat,1,79,0,81689771,81689844 +6 + chr9 81749686 81749812 chr9,81749650,81749952,-,AluJr,SINE,Alu,-2,310,1,81749648,81749952 -3 - chr9 81755161 81755452 chr9,81755161,81755621,+,MER31B,LTR,ERV1,1,466,0,81755161,81755621 +5 + chr9 81775938 81776070 chr9,81775927,81776070,-,AluJr4,SINE,Alu,-187,125,3,81775740,81776072 -2 - chr9 81776070 81776086 chr9,81776070,81776086,+,(TTC)n,Simple_repeat,Simple_repeat,1,16,0,81776070,81776086 +6 + chr9 81776100 81776287 chr9,81776100,81776287,+,L2c,LINE,L2,3111,3312,-75,81772990,81776362 +6 + chr9 81776287 81776720 chr9,81776287,81776720,-,LTR16A,LTR,ERVL,0,451,3,81776287,81776722 -6 - chr9 81776720 81776782 chr9,81776720,81776782,+,L2c,LINE,L2,3313,3357,-30,81773408,81776812 +6 + chr9 81776783 81776900 chr9,81776783,81777128,+,MER102b,DNA,hAT-Charlie,11,340,-1,81776773,81777129 +5 + chr9 81930226 81930243 chr9,81930225,81930243,+,(TTCTT)n,Simple_repeat,Simple_repeat,1,45,0,81930225,81930243 -5 + chr9 81973941 81974247 chr9,81973865,81974439,-,MLT1F2,LTR,ERVL-MaLR,0,560,1,81973865,81974439 +3 - chr9 81976760 81977074 chr9,81976760,81977074,-,AluY,SINE,Alu,0,311,1,81976760,81977074 +1 - chr9 82272884 82273136 chr9,82272884,82273136,-,MIR,SINE,MIR,-9,253,1,82272875,82273136 -6 - chr9 82273136 82273196 chr9,82273136,82273196,+,L1P1,LINE,L1,2548,2607,-3539,82270589,82276735 +6 + chr9 82273339 82273423 chr9,82273339,82273423,-,MIR3,SINE,MIR,-8,200,117,82273331,82273539 -1 - chr9 82277049 82277071 chr9,82276889,82277071,-,L3b,LINE,CR1,-103,5129,4934,82276786,82282004 -1 - chr9 82297382 82297540 chr9,82297260,82298334,-,HAL1,LINE,L1,-533,1974,838,82296727,82299171 -3 - chr9 82349804 82349823 chr9,82349633,82349823,-,MER63A,DNA,hAT-Blackjack,0,210,4,82349633,82349826 -2 - chr9 82349823 82349848 chr9,82349823,82349860,-,MIRb,SINE,MIR,-79,189,155,82349744,82350014 -4 - chr9 82405188 82405310 chr9,82405188,82405344,+,MER5A1,DNA,hAT-Charlie,1,164,-2,82405188,82405346 +1 + chr9 82426292 82426376 chr9,82426287,82426376,+,LTR33B,LTR,ERVL,126,215,-288,82426162,82426664 +3 + chr9 82451603 82451729 chr9,82451598,82451745,+,HAL1,LINE,L1,802,956,-1551,82450797,82453296 +5 + chr9 82453345 82453458 chr9,82453014,82453544,+,HAL1,LINE,L1,1941,2506,-1,82451074,82453545 +5 + chr9 82496715 82496858 chr9,82496090,82497158,-,L1PBa,LINE,L1,-5572,1290,63,82490518,82497220 -3 - chr9 82536054 82536118 chr9,82536046,82536118,+,L3,LINE,CR1,1213,1292,-2807,82534834,82538925 +2 + chr9 82564029 82564223 chr9,82563815,82564223,+,MSTA,LTR,ERVL-MaLR,5,428,0,82563811,82564223 +5 + chr9 82564229 82564432 chr9,82564229,82564687,+,L2a,LINE,L2,2936,3426,0,82561294,82564687 +5 + chr9 83279425 83279499 chr9,83279425,83279982,+,L1PA10,LINE,L1,5613,6168,0,83273813,83279982 +5 + chr9 83707679 83707702 chr9,83707679,83707702,+,(GGC)n,Simple_repeat,Simple_repeat,1,23,0,83707679,83707702 +6 + chr9 83712498 83713378 chr9,83712333,83713605,+,HSMAR1,DNA,TcMar-Mariner,4,1287,0,83712330,83713605 +5 + chr9 83847563 83847908 chr9,83847560,83847951,+,MLT2A1,LTR,ERVL,1,404,-40,83847560,83847991 +1 + chr9 83848660 83848700 chr9,83848660,83848764,-,AluJo,SINE,Alu,-194,118,1,83848466,83848764 -4 - chr9 83848809 83848955 chr9,83848809,83849113,-,AluJb,SINE,Alu,-9,303,1,83848800,83849113 -1 - chr9 83855056 83855177 chr9,83855031,83855335,-,AluSx,SINE,Alu,-11,301,1,83855020,83855335 -3 - chr9 83858701 83858886 chr9,83858701,83858886,+,MER105,DNA,hAT-Charlie,5,199,-4,83858697,83858890 +1 + chr9 83859577 83859832 chr9,83859530,83859832,-,AluSq2,SINE,Alu,-12,301,1,83859518,83859832 -2 - chr9 83868082 83868126 chr9,83868082,83868126,+,L3b,LINE,CR1,4837,4880,-352,83863246,83868478 +6 + chr9 83868189 83868355 chr9,83868189,83868355,+,L2b,LINE,L2,3217,3387,0,83864973,83868355 +5 + chr9 83975507 83975554 chr9,83975507,83975554,+,(GCATTGG)n,Simple_repeat,Simple_repeat,1,49,0,83975507,83975554 +6 + chr9 84075428 84075733 chr9,84074373,84075733,-,L1MEf,LINE,L1,-4899,1741,372,84069474,84076104 -2 - chr9 84075730 84075848 chr9,84075730,84077166,+,L1M1,LINE,L1,14,1477,-6088,84075717,84083254 +4 + chr9 84077906 84078087 chr9,84077200,84078499,+,L1MA2,LINE,L1,4989,6304,0,84072212,84078499 +3 + chr9 84081938 84082009 chr9,84081776,84082018,+,MIRb,SINE,MIR,18,262,-6,84081759,84082024 +3 + chr9 84094341 84094577 chr9,84094328,84094601,+,AluSx1,SINE,Alu,1,307,-5,84094328,84094606 +5 + chr9 86950867 86950999 chr9,86950840,86951125,+,MLT1H1,LTR,ERVL-MaLR,182,431,-124,86950659,86951249 +3 + chr9 86987448 86987486 chr9,86987183,86987486,-,MER2,DNA,TcMar-Tigger,0,345,10,86987183,86987495 -2 - chr9 86987583 86987615 chr9,86987583,86987796,-,MIRb,SINE,MIR,-10,258,26,86987573,86987821 -4 - chr9 86998594 86998701 chr9,86998466,86998701,-,MIR,SINE,MIR,-1,261,24,86998465,86998724 -2 - chr9 86998844 86998871 chr9,86998844,86998871,+,(AAT)n,Simple_repeat,Simple_repeat,1,28,0,86998844,86998871 +6 + chr9 86999017 86999673 chr9,86999017,86999673,-,L1M5,LINE,L1,-1217,4929,4250,86997800,87003922 -6 - chr9 86999673 86999982 chr9,86999673,86999982,-,AluSq,SINE,Alu,-6,307,1,86999667,86999982 -6 - chr9 86999982 87000000 chr9,86999982,87000000,-,L1M5,LINE,L1,-1897,4249,4233,86998085,87004232 -6 - chr9 87000023 87000311 chr9,87000023,87000311,-,L1MEc,LINE,L1,-1939,4380,4059,86998084,87004369 -6 - chr9 87000346 87000577 chr9,87000346,87000577,-,L1ME1,LINE,L1,-2,6177,5935,87000344,87006511 -6 - chr9 87000572 87000638 chr9,87000572,87000638,-,L1MEc,LINE,L1,-2290,4029,3956,86998282,87004593 -6 - chr9 87000664 87000876 chr9,87000664,87000876,-,L1MEc,LINE,L1,-2439,3880,3665,86998225,87004540 -6 - chr9 87000886 87001023 chr9,87000886,87001023,-,L1MEc,LINE,L1,-2708,3611,3469,86998178,87004491 -6 - chr9 87001044 87001375 chr9,87001044,87001375,-,L1MD,LINE,L1,-3311,2835,2501,86997733,87003875 -6 - chr9 87001382 87002033 chr9,87001382,87002638,-,L1MEc,LINE,L1,-3794,2525,1172,86997588,87003809 -5 - chr9 87009094 87009195 chr9,87009094,87009195,+,AluJo,SINE,Alu,11,130,-182,87009084,87009377 -6 + chr9 87009489 87009620 chr9,87009489,87009620,-,FLAM_C,SINE,Alu,-10,133,3,87009479,87009622 +6 - chr9 87041882 87042126 chr9,87041882,87047900,+,L1PA3,LINE,L1,127,6155,0,87041756,87047900 -1 + chr9 87553454 87553471 chr9,87553367,87553471,+,L2b,LINE,L2,3264,3353,-22,87550104,87553493 +1 + chr9 87553483 87553590 chr9,87553483,87553795,-,AluSz,SINE,Alu,0,312,1,87553483,87553795 -4 - chr9 87848252 87848308 chr9,87848252,87848308,-,L3b,LINE,CR1,-8,5224,5166,87848244,87853473 +6 - chr9 87849576 87849676 chr9,87849391,87849676,-,MLT1G3,LTR,ERVL-MaLR,-2,577,265,87849389,87849940 +4 - chr9 87852891 87853004 chr9,87852819,87853004,-,MER5A,DNA,hAT-Charlie,-2,187,1,87852817,87853004 +4 - chr9 87857112 87857984 chr9,87857112,87857984,-,SVA_F,Retroposon,SVA,-518,857,421,87856594,87858404 +6 - chr9 87857984 87858062 chr9,87857984,87858062,-,AluYk11,SINE,Alu,-227,84,6,87857757,87858067 +6 - chr9 88177789 88178023 chr9,88177789,88178023,-,MER41G,LTR,ERV1,0,885,653,88177789,88178675 -6 - chr9 88178023 88178154 chr9,88178023,88178154,+,(TTTC)n,Simple_repeat,Simple_repeat,1,134,0,88178023,88178154 +6 + chr9 88178154 88178441 chr9,88178154,88178441,-,AluY,SINE,Alu,-23,288,1,88178131,88178441 -6 - chr9 88178441 88178578 chr9,88178441,88178718,-,MER41G,LTR,ERV1,-609,276,3,88177832,88178720 -5 - chr9 88627309 88627402 chr9,88627309,88627880,-,MLT2F,LTR,ERVL,-67,596,1,88627242,88627880 +2 - chr9 88628257 88628346 chr9,88627966,88628473,-,Charlie1b,DNA,hAT-Charlie,-1,522,2,88627965,88628474 +3 - chr9 88651961 88651987 chr9,88651918,88651987,+,MIR,SINE,MIR,65,135,-127,88651854,88652114 -4 + chr9 89719348 89719759 chr9,89719348,89719809,+,MLT1G1,LTR,ERVL-MaLR,11,585,-10,89719338,89719819 +5 + chr9 89821390 89821753 chr9,89821390,89821965,-,L1MEd,LINE,L1,-743,5403,4801,89820647,89826765 -5 - chr9 89987312 89987486 chr9,89987312,89987509,+,MER115,DNA,hAT-Tip100,445,659,-34,89986868,89987543 +5 + chr9 90041332 90041499 chr9,90041332,90041761,-,LTR12F,LTR,ERV1,0,519,1,90041332,90041761 +1 - chr9 90158158 90158292 chr9,90158158,90158292,+,LTR78B,LTR,ERV1,257,391,-905,90157902,90159197 +6 + chr9 90300979 90301016 chr9,90300979,90301016,+,(AC)n,Simple_repeat,Simple_repeat,1,39,0,90300979,90301016 -6 + chr9 90383695 90383721 chr9,90383695,90383778,+,L2c,LINE,L2,3270,3348,-39,90380426,90383817 -2 + chr9 90385503 90385583 chr9,90385503,90385602,+,LTR79,LTR,ERVL,387,497,-30,90385117,90385632 -2 + chr9 90466816 90466848 chr9,90466641,90466848,-,Tigger9b,DNA,TcMar-Tigger,-55,569,358,90466586,90467205 +4 - chr9 90466875 90466945 chr9,90466875,90466966,+,GA-rich,Low_complexity,Low_complexity,1,92,0,90466875,90466966 -1 + chr9 90507258 90507268 chr9,90507020,90507268,-,MER20B,DNA,hAT-Charlie,-267,516,264,90506753,90507531 +4 - chr9 90561090 90561152 chr9,90561090,90561246,-,MIRc,SINE,MIR,-15,253,88,90561075,90561333 +2 - chr9 90957260 90957424 chr9,90956341,90957596,-,HSMAR1,DNA,TcMar-Mariner,-2,1285,1,90956339,90957596 +5 - chr9 90997054 90997124 chr9,90996845,90997203,+,THE1B,LTR,ERVL-MaLR,3,364,0,90996843,90997203 +1 + chr9 90997596 90997817 chr9,90997473,90998100,+,MER6A,DNA,TcMar-Tigger,2,605,0,90997472,90998100 +3 + chr9 91106465 91106547 chr9,91106269,91106547,-,HAL1M8,LINE,L1,-2650,341,47,91103619,91106593 +4 - chr9 91107123 91107304 chr9,91106944,91107868,-,Tigger1,DNA,TcMar-Tigger,0,2418,1477,91106944,91109344 +1 - chr9 91159573 91159594 chr9,91159265,91159594,+,GA-rich,Low_complexity,Low_complexity,1,335,0,91159265,91159594 +1 + chr9 91162833 91162868 chr9,91162833,91162868,+,(CTGTGC)n,Simple_repeat,Simple_repeat,1,37,0,91162833,91162868 +6 + chr9 91164037 91164363 chr9,91164037,91164363,+,MLT1G3,LTR,ERVL-MaLR,3,365,-230,91164035,91164593 +6 + chr9 91165311 91165492 chr9,91165311,91165492,-,MER5A1,DNA,hAT-Charlie,0,166,2,91165311,91165493 -6 - chr9 91170669 91170721 chr9,91170448,91171108,-,L1ME2,LINE,L1,-872,5274,4555,91169576,91175662 -1 - chr9 91182057 91182115 chr9,91182055,91182115,+,(TGTGTG)n,Simple_repeat,Simple_repeat,1,61,0,91182055,91182115 +1 + chr9 91182210 91182282 chr9,91182210,91182282,-,MIR,SINE,MIR,-62,200,116,91182148,91182397 -6 - chr9 91206175 91207157 chr9,91205481,91207157,+,L1MB7,LINE,L1,4914,6659,-23,91200568,91207180 -5 + chr9 91209241 91209370 chr9,91209241,91209370,-,L3,LINE,CR1,-293,3806,3667,91208948,91213036 +6 - chr9 91209478 91209576 chr9,91209478,91209576,-,MIR3,SINE,MIR,-67,141,41,91209411,91209616 +6 - chr9 91209604 91209699 chr9,91209604,91209699,-,L3,LINE,CR1,-463,3636,3541,91209141,91213239 +6 - chr9 91209751 91210034 chr9,91209751,91210034,-,AluY,SINE,Alu,-7,304,21,91209744,91210054 +6 - chr9 92145043 92145077 chr9,92145043,92145077,+,(TTT)n,Simple_repeat,Simple_repeat,1,34,0,92145043,92145077 +6 + chr9 92145086 92145110 chr9,92145086,92145187,-,U13_,snRNA,snRNA,-7,101,1,92145079,92145187 -5 - chr9 92148205 92148286 chr9,92148205,92148286,+,L1MA9,LINE,L1,6194,6274,-38,92142012,92148324 +6 + chr9 92150440 92150482 chr9,92150440,92150482,+,(TTTTC)n,Simple_repeat,Simple_repeat,1,43,0,92150440,92150482 -6 + chr9 92156170 92156289 chr9,92156170,92156470,-,MER65A,LTR,ERV1,0,445,157,92156170,92156626 -4 - chr9 92158101 92158960 chr9,92157881,92158960,-,L1MC3,LINE,L1,-1,7784,6643,92157880,92165602 -5 - chr9 92158980 92159047 chr9,92158980,92159047,-,L2b,LINE,L2,0,3375,3308,92158980,92162354 -6 - chr9 92205356 92205436 chr9,92205299,92205636,-,AluJb,SINE,Alu,-1,311,3,92205298,92205638 -1 - chr9 92209518 92209595 chr9,92209518,92209735,-,HAL1,LINE,L1,-2155,352,99,92207363,92209833 -4 - chr9 92210054 92210158 chr9,92209750,92210200,+,LTR16B1,LTR,ERVL,1,479,-1,92209750,92210201 +5 + chr9 93095368 93095421 chr9,93095350,93095421,+,MIRc,SINE,MIR,77,149,-119,93095274,93095540 -4 + chr9 93148333 93148556 chr9,93148274,93148576,-,AluSq2,SINE,Alu,0,313,2,93148274,93148577 -5 - chr9 93430344 93430469 chr9,93430344,93430469,+,L1ME4a,LINE,L1,5992,6123,-1,93424353,93430470 -6 + chr9 93435332 93435414 chr9,93435112,93435414,-,AluY,SINE,Alu,-9,302,1,93435103,93435414 +5 - chr9 93435414 93435476 chr9,93435414,93435476,+,(TC)n,Simple_repeat,Simple_repeat,1,66,0,93435414,93435476 -6 + chr9 93435739 93435837 chr9,93435739,93435837,-,HAL1,LINE,L1,-2360,147,47,93433379,93435883 +6 - chr9 93956518 93956608 chr9,93956518,93956608,+,MIRb,SINE,MIR,104,196,-72,93956415,93956680 +6 + chr9 93957513 93957538 chr9,93957482,93957538,-,MIR3,SINE,MIR,-45,163,109,93957437,93957646 -2 - chr9 94199198 94199251 chr9,94195401,94199254,-,L1PB3,LINE,L1,-3811,3104,56,94191590,94199309 +3 - chr9 94200486 94200627 chr9,94200395,94200806,-,MSTB,LTR,ERVL-MaLR,-2,424,1,94200393,94200806 -5 - chr9 94200814 94200872 chr9,94200806,94200948,+,MSTC,LTR,ERVL-MaLR,285,426,-2,94200522,94200950 -3 + chr9 94204493 94204504 chr9,94204470,94204504,+,AluYk11,SINE,Alu,1,34,-277,94204470,94204781 -4 + chr9 94204504 94204568 chr9,94204504,94205008,+,LTR12F,LTR,ERV1,1,519,0,94204504,94205008 -1 + chr9 94332786 94332988 chr9,94332786,94333062,+,MER63C,DNA,hAT-Blackjack,400,687,-243,94332387,94333305 +4 + chr9 94360487 94360581 chr9,94360487,94360581,+,L2a,LINE,L2,3312,3413,-13,94357176,94360594 +6 + chr9 94360662 94360948 chr9,94360662,94360969,+,AluSq,SINE,Alu,1,309,-4,94360662,94360973 +5 + chr9 94555069 94555310 chr9,94554808,94556523,-,REP522,Satellite,telo,-693,1676,1,94554115,94556523 -1 - chr9 94567846 94568127 chr9,94567846,94568141,+,AluY,SINE,Alu,1,295,-16,94567846,94568157 +5 + chr9 94900807 94900894 chr9,94900711,94900991,-,Tigger19b,DNA,TcMar-Tigger,-1,549,249,94900710,94901239 -3 - chr9 94904252 94904343 chr9,94904252,94904343,-,MIRb,SINE,MIR,-79,189,88,94904173,94904430 -6 - chr9 94934915 94934946 chr9,94934915,94934987,-,LTR16A2,LTR,ERVL,-2,493,425,94934913,94935411 +1 - chr9 95113708 95113749 chr9,95113626,95113921,-,AluY,SINE,Alu,-14,297,1,95113612,95113921 -1 - chr9 95113975 95114092 chr9,95113921,95114092,+,AluJr,SINE,Alu,126,288,-24,95113796,95114116 +2 + chr9 95414834 95414858 chr9,95414785,95414858,-,MLT1A,LTR,ERVL-MaLR,0,374,303,95414785,95415160 +5 - chr9 95414860 95414927 chr9,95414860,95414927,-,MLT1A,LTR,ERVL-MaLR,-307,67,1,95414553,95414927 +6 - chr9 95414927 95414978 chr9,95414927,95414978,-,MLT1A-int,LTR,ERVL-MaLR,0,1735,1685,95414927,95416662 +6 - chr9 95414981 95415075 chr9,95414981,95415075,+,MER47C,DNA,TcMar-Tigger,7,96,-1,95414975,95415076 -6 + chr9 95415109 95415195 chr9,95415109,95415195,+,Tigger5b,DNA,TcMar-Tigger,386,472,0,95414724,95415195 -6 + chr9 95415195 95415580 chr9,95415195,95415580,-,MLT1A-int,LTR,ERVL-MaLR,-46,1689,1290,95415149,95416869 +6 - chr9 95415746 95416164 chr9,95415746,95416334,-,MLT1-int,LTR,ERVL-MaLR,-478,893,225,95415268,95416558 +2 - chr9 95506648 95506680 chr9,95506648,95506680,+,(CGCGCC)n,Simple_repeat,Simple_repeat,1,32,0,95506648,95506680 +6 + chr9 95601971 95602159 chr9,95601858,95602162,+,MER102b,DNA,hAT-Charlie,12,341,0,95601847,95602162 -3 + chr9 95715404 95715718 chr9,95715342,95715773,+,MLT1J2,LTR,ERVL-MaLR,1,448,0,95715342,95715773 +5 + chr9 95759231 95759262 chr9,95758970,95759262,+,AluSc8,SINE,Alu,3,295,-16,95758968,95759278 -5 + chr9 95759283 95759413 chr9,95759283,95759413,+,MARNA,DNA,TcMar-Mariner,244,392,-194,95759040,95759607 -6 + chr9 95759780 95759836 chr9,95759780,95760156,-,MER39,LTR,ERV1,0,707,325,95759780,95760480 +2 - chr9 95772323 95772335 chr9,95772301,95772335,+,(AC)n,Simple_repeat,Simple_repeat,1,34,0,95772301,95772335 +1 + chr9 95773517 95773669 chr9,95773517,95773669,+,MIRc,SINE,MIR,102,264,-4,95773416,95773673 +6 + chr9 95773960 95774176 chr9,95773960,95774176,+,MIRc,SINE,MIR,79,262,0,95773882,95774176 +6 + chr9 95773960 95774017 chr9,95773960,95774176,+,MIRc,SINE,MIR,79,262,0,95773882,95774176 -2 + chr9 95774248 95774291 chr9,95774248,95774291,-,L2b,LINE,L2,0,3375,3333,95774248,95777623 -6 - chr9 95774294 95774734 chr9,95774294,95774822,+,MER34B,LTR,ERV1,3,565,0,95774292,95774822 +5 + chr9 95813293 95813589 chr9,95813284,95813589,-,AluSp,SINE,Alu,-7,306,1,95813277,95813589 +5 - chr9 95813589 95813640 chr9,95813589,95813640,-,HAL1,LINE,L1,-617,1890,1842,95812972,95815481 +6 - chr9 95840600 95840636 chr9,95840436,95840636,-,AluJo,SINE,Alu,-2,310,84,95840434,95840719 +5 - chr9 95841023 95841088 chr9,95841023,95841088,-,L2c,LINE,L2,-1,3386,3324,95841022,95844411 +6 - chr9 95841138 95841343 chr9,95841138,95841343,+,L2c,LINE,L2,3203,3421,-5,95837936,95841348 -6 + chr9 95842161 95842321 chr9,95842161,95842321,-,MER117,DNA,hAT-Charlie,-3,194,31,95842158,95842351 +6 - chr9 95842398 95842475 chr9,95842398,95842475,+,MER5A,DNA,hAT-Charlie,2,77,-112,95842397,95842587 -6 + chr9 95842475 95842750 chr9,95842475,95842781,+,AluSc,SINE,Alu,1,307,-2,95842475,95842783 -2 + chr9 95850227 95850292 chr9,95850112,95851086,+,L1MCa,LINE,L1,1592,2594,-3727,95848521,95854813 -3 + chr9 95869840 95870261 chr9,95869819,95870261,-,L1MEd,LINE,L1,-2705,3441,2922,95867114,95873182 +5 - chr9 95870346 95870441 chr9,95870346,95870665,-,LTR78,LTR,ERV1,-101,1203,890,95870245,95871554 +2 - chr9 95874509 95874622 chr9,95874437,95874902,+,MLT1D,LTR,ERVL-MaLR,5,505,0,95874433,95874902 -3 + chr9 96019732 96019903 chr9,96019678,96019903,-,THE1D,LTR,ERVL-MaLR,0,381,157,96019678,96020059 +5 - chr9 96019903 96020190 chr9,96019903,96020190,+,AluSg,SINE,Alu,1,291,-19,96019903,96020209 -6 + chr9 96020190 96020335 chr9,96020190,96020335,-,THE1D,LTR,ERVL-MaLR,-225,156,1,96019965,96020335 +6 - chr9 96101447 96101912 chr9,96101447,96101998,+,MER41A,LTR,ERV1,1,554,0,96101447,96101998 +5 + chr9 96250218 96250289 chr9,96250218,96250289,+,(CACAGA)n,Simple_repeat,Simple_repeat,1,69,0,96250218,96250289 +6 + chr9 97234897 97235014 chr9,97234897,97235031,+,MIRb,SINE,MIR,60,189,-79,97234838,97235110 +5 + chr9 97237764 97237796 chr9,97237763,97237796,+,(TTTA)n,Simple_repeat,Simple_repeat,1,34,0,97237763,97237796 -5 + chr9 97237798 97238071 chr9,97237798,97238071,-,AluSg4,SINE,Alu,-35,275,1,97237763,97238071 +6 - chr9 97291621 97291739 chr9,97291621,97291739,-,MIRc,SINE,MIR,-38,230,104,97291583,97291842 -6 - chr9 97291773 97291877 chr9,97291773,97291877,+,MIR1_Amn,SINE,MIR,65,171,-59,97291709,97291936 +6 + chr9 97291876 97291993 chr9,97291876,97292070,-,MIR,SINE,MIR,-51,217,3,97291825,97292072 -5 - chr9 97294963 97294991 chr9,97294963,97295032,+,L3,LINE,CR1,3523,3585,-514,97291441,97295546 +4 + chr9 97296793 97296935 chr9,97296793,97296935,-,MIRb,SINE,MIR,-2,266,118,97296791,97297052 -6 - chr9 97296936 97297141 chr9,97296936,97297141,+,MIR,SINE,MIR,52,262,0,97296885,97297141 +6 + chr9 97297117 97297290 chr9,97297117,97297290,+,L2a,LINE,L2,3228,3408,-18,97293890,97297308 +6 + chr9 97325124 97325160 chr9,97325124,97325160,+,(TGGAGC)n,Simple_repeat,Simple_repeat,1,36,0,97325124,97325160 +6 + chr9 97376934 97376998 chr9,97376934,97376998,+,(TCCT)n,Simple_repeat,Simple_repeat,1,65,0,97376934,97376998 +6 + chr9 97377004 97377101 chr9,97377004,97377101,-,L2b,LINE,L2,-46,3329,3233,97376958,97380333 -5 - chr9 97377207 97377287 chr9,97377207,97377378,-,Tigger18a,DNA,TcMar-Tigger,-114,738,572,97377093,97377949 -5 - chr9 97512706 97512960 chr9,97512134,97512960,+,L1ME3,LINE,L1,5347,6162,0,97506788,97512960 -5 + chr9 97512996 97513199 chr9,97512996,97513199,-,L3,LINE,CR1,-509,3590,3379,97512487,97516577 +5 - chr9 97513706 97513842 chr9,97513706,97513842,-,MIR3,SINE,MIR,-93,137,1,97513613,97513842 +6 - chr9 97516509 97516643 chr9,97516509,97516643,-,L2,LINE,L2,-557,2862,2721,97515952,97519363 +6 - chr9 97516720 97516818 chr9,97516720,97517015,+,L1MB3,LINE,L1,5886,6182,-1,97510835,97517016 -2 + chr9 97743208 97743236 chr9,97743047,97743236,-,MER113A,DNA,hAT-Charlie,-67,247,27,97742980,97743262 -1 - chr9 97743305 97743506 chr9,97743305,97743506,-,MIR,SINE,MIR,-56,206,5,97743249,97743510 -6 - chr9 97743587 97744016 chr9,97743587,97744016,+,MLT1D,LTR,ERVL-MaLR,27,504,-1,97743561,97744017 +6 + chr9 97744090 97744463 chr9,97744090,97744463,+,THE1D,LTR,ERVL-MaLR,1,381,0,97744090,97744463 +6 + chr9 97744512 97744883 chr9,97744512,97744883,-,L4_C_Mam,LINE,RTE-X,-86,5052,4671,97744426,97749553 -6 - chr9 97805976 97806024 chr9,97805976,97806138,-,MIR3,SINE,MIR,-35,173,18,97805941,97806155 +2 - chr9 98868991 98869154 chr9,98868961,98869154,-,MLT1J,LTR,ERVL-MaLR,-29,483,288,98868932,98869441 +5 - chr9 98869965 98870031 chr9,98869706,98870031,-,AluSx1,SINE,Alu,-19,293,1,98869687,98870031 +4 - chr9 98870031 98870064 chr9,98870031,98870124,-,MLT1J,LTR,ERVL-MaLR,-400,112,20,98869631,98870143 +5 - chr9 98870114 98870124 chr9,98870031,98870124,-,MLT1J,LTR,ERVL-MaLR,-400,112,20,98869631,98870143 +5 - chr9 98870129 98870357 chr9,98870129,98870357,-,LTR89,LTR,ERVL?,-9,870,614,98870120,98870970 +5 - chr9 98871360 98871396 chr9,98871194,98871586,+,MLT1K,LTR,ERVL-MaLR,142,586,-9,98871053,98871595 -3 + chr9 98872323 98872358 chr9,98872323,98872358,+,(TGAA)n,Simple_repeat,Simple_repeat,1,35,0,98872323,98872358 -6 + chr9 98943488 98943594 chr9,98943488,98943594,+,MIRb,SINE,MIR,86,189,-79,98943403,98943673 -6 + chr9 99183427 99183513 chr9,99183427,99183647,-,MIR,SINE,MIR,-14,248,1,99183413,99183647 -4 - chr9 99355337 99355442 chr9,99354987,99355442,+,L1M5,LINE,L1,5334,5790,-389,99349654,99355831 -5 + chr9 99355580 99355934 chr9,99355580,99355934,-,L2c,LINE,L2,-79,3308,2911,99355501,99358844 +6 - chr9 99356099 99356264 chr9,99356099,99356316,-,MER20,DNA,hAT-Charlie,0,219,1,99356099,99356316 +1 - chr9 99367661 99367769 chr9,99367557,99367769,+,MIR,SINE,MIR,23,261,-7,99367535,99367776 -4 + chr9 99370962 99371166 chr9,99370962,99371166,+,MIRc,SINE,MIR,31,251,-17,99370932,99371183 -6 + chr9 99371645 99371872 chr9,99371645,99371872,+,MIRb,SINE,MIR,3,260,-8,99371643,99371880 -6 + chr9 99372380 99372512 chr9,99372380,99372588,+,MIRc,SINE,MIR,5,227,-41,99372376,99372629 -1 + chr9 99375232 99375385 chr9,99375232,99375385,-,MER117,DNA,hAT-Charlie,-33,164,4,99375199,99375388 +6 - chr9 99375405 99375543 chr9,99375405,99375543,+,MIR3,SINE,MIR,43,193,-15,99375363,99375558 -6 + chr9 99375722 99375784 chr9,99375722,99375858,-,MIR3,SINE,MIR,0,208,71,99375722,99375928 +1 - chr9 99376400 99376496 chr9,99376356,99376750,+,MLT1D,LTR,ERVL-MaLR,27,465,-40,99376330,99376790 -3 + chr9 99376927 99377048 chr9,99376927,99377048,+,MLT1N2,LTR,ERVL-MaLR,332,465,-97,99376596,99377145 -6 + chr9 99377109 99377139 chr9,99377109,99377139,+,(CTC)n,Simple_repeat,Simple_repeat,1,30,0,99377109,99377139 -6 + chr9 99536809 99536924 chr9,99536809,99537159,-,L3,LINE,CR1,-2433,1666,1287,99534376,99538445 -5 - chr9 99585818 99586024 chr9,99585818,99586024,+,L1ME3E,LINE,L1,5975,6187,-55,99579844,99586079 -6 + chr9 99586025 99586083 chr9,99586025,99586083,+,L2a,LINE,L2,3370,3425,-1,99582656,99586084 -6 + chr9 99586081 99586401 chr9,99586081,99586401,+,L2c,LINE,L2,2842,3212,-175,99583240,99586576 -6 + chr9 99586967 99586984 chr9,99586967,99587024,+,L2a,LINE,L2,3364,3426,0,99583604,99587024 -2 + chr9 99596246 99596279 chr9,99596246,99596279,+,(ATCC)n,Simple_repeat,Simple_repeat,1,34,0,99596246,99596279 -6 + chr9 99894880 99895005 chr9,99894752,99897781,+,L1M1,LINE,L1,8,3086,-4479,99894745,99902260 -3 + chr9 99906588 99906601 chr9,99906588,99906615,+,(GGGGCG)n,Simple_repeat,Simple_repeat,1,27,0,99906588,99906615 -1 + chr9 99929808 99929896 chr9,99929406,99929900,-,HAL1,LINE,L1,-4,2503,1960,99929402,99931859 +1 - chr9 101468439 101468608 chr9,101468132,101468685,+,MLT1L,LTR,ERVL-MaLR,24,602,-8,101468109,101468693 +1 + chr9 101474876 101474992 chr9,101474763,101474992,-,MIRb,SINE,MIR,-16,252,25,101474747,101475016 -2 - chr9 102519636 102519708 chr9,102519423,102519791,+,THE1D,LTR,ERVL-MaLR,2,381,0,102519422,102519791 +1 + chr9 102578295 102578396 chr9,102578295,102578727,+,ERV3-16A3_LTR,LTR,ERVL,1,418,-4,102578295,102578731 +4 + chr9 102643131 102643214 chr9,102643124,102643358,+,MER41A,LTR,ERV1,1,254,-300,102643124,102643658 +3 + chr9 103141050 103141101 chr9,103141050,103141101,+,MIRb,SINE,MIR,26,82,-186,103141025,103141287 -6 + chr9 103141102 103141223 chr9,103141102,103141223,+,L1MA4,LINE,L1,6165,6285,-15,103134938,103141238 -6 + chr9 103141825 103142404 chr9,103141825,103142404,-,L1MC2,LINE,L1,-8,6336,5776,103141817,103148179 +6 - chr9 103142449 103142764 chr9,103142449,103142764,+,AluJb,SINE,Alu,1,298,-14,103142449,103142778 -6 + chr9 103142865 103142898 chr9,103142865,103142898,+,A-rich,Low_complexity,Low_complexity,1,33,0,103142865,103142898 -6 + chr9 103142906 103143201 chr9,103142906,103143201,+,AluSg,SINE,Alu,1,296,-14,103142906,103143215 -6 + chr9 103188046 103188109 chr9,103186731,103188109,+,LTR12C,LTR,ERV1,2,1579,0,103186730,103188109 -4 + chr9 103207173 103207443 chr9,103207154,103207637,+,MLT1J,LTR,ERVL-MaLR,28,509,-3,103207127,103207640 -5 + chr9 103264524 103264650 chr9,103263612,103264657,-,L1MA5A,LINE,L1,0,6156,5186,103263612,103269842 +3 - chr9 103276031 103276148 chr9,103275873,103276165,+,AluSz,SINE,Alu,1,296,-16,103275873,103276181 -5 + chr9 103277330 103277499 chr9,103277173,103277565,+,LTR16C,LTR,ERVL,74,485,-4,103277100,103277569 -3 + chr9 103320025 103320116 chr9,103320025,103320116,-,MamRTE1,LINE,RTE-BovB,-1627,2185,2085,103318398,103322200 +6 - chr9 103324991 103325026 chr9,103324986,103325026,-,MLT1E2,LTR,ERVL-MaLR,-528,99,60,103324458,103325085 +4 - chr9 104080024 104081277 chr9,104079425,104081277,-,MER41-int,LTR,ERV1,-1668,5750,2565,104077757,104083841 +5 - chr9 104081277 104081608 chr9,104081277,104081608,+,L1PA10,LINE,L1,5818,6167,-1,104075460,104081609 -6 + chr9 104081608 104081998 chr9,104081608,104081998,-,MER41-int,LTR,ERV1,-3382,2564,2167,104078226,104084164 +6 - chr9 104081987 104082183 chr9,104081987,104082183,-,MER41-int,LTR,ERV1,-3929,2017,1719,104078058,104083901 +6 - chr9 104082161 104082406 chr9,104082161,104082406,-,MER41-int,LTR,ERV1,-3089,1791,1367,104079072,104083772 +6 - chr9 104082406 104082436 chr9,104082406,104082436,+,(GTTTT)n,Simple_repeat,Simple_repeat,1,30,0,104082406,104082436 -6 + chr9 104082436 104082504 chr9,104082436,104082504,-,MER41-int,LTR,ERV1,-4580,1366,1286,104077856,104083789 +6 - chr9 104082504 104083050 chr9,104082504,104083050,-,MLT2A2,LTR,ERVL,0,554,3,104082504,104083052 +6 - chr9 104083053 104084320 chr9,104083053,104084320,-,MER41-int,LTR,ERV1,-4659,1287,1,104078394,104084320 +6 - chr9 104084320 104084950 chr9,104084320,104084950,-,MER41B,LTR,ERV1,0,634,1,104084320,104084950 +6 - chr9 104085224 104085314 chr9,104085224,104085314,+,MIR1_Amn,SINE,MIR,108,203,-5,104085117,104085319 -6 + chr9 104087040 104087155 chr9,104086721,104087375,+,LTR104_Mam,LTR,Gypsy,49,711,-798,104086673,104088173 -3 + chr9 104092838 104093073 chr9,104092838,104093157,+,MLT1A0,LTR,ERVL-MaLR,2,365,0,104092837,104093157 -1 + chr9 104990832 104990946 chr9,104990832,104990946,-,MIR3,SINE,MIR,-39,169,42,104990793,104990987 +6 - chr9 104991211 104991245 chr9,104991211,104991245,+,(CCCGCC)n,Simple_repeat,Simple_repeat,1,35,0,104991211,104991245 -6 + chr9 104991743 104991781 chr9,104991743,104991784,+,(GCGGCGG)n,Simple_repeat,Simple_repeat,1,39,0,104991743,104991784 -1 + chr9 105554035 105554343 chr9,105553952,105554720,-,LTR25,LTR,ERV1,-27,817,9,105553925,105554728 +5 - chr9 105557152 105557175 chr9,105557152,105557202,+,L1ME4b,LINE,L1,708,757,-135,105556445,105557337 -2 + chr9 105656996 105657015 chr9,105656996,105657015,+,(GT)n,Simple_repeat,Simple_repeat,1,19,0,105656996,105657015 +6 + chr9 105657633 105657989 chr9,105657633,105658048,+,Charlie4a,DNA,hAT-Charlie,14,458,-50,105657620,105658098 +5 + chr9 106061354 106061521 chr9,106061193,106061521,+,L1M5,LINE,L1,5260,5597,-597,106055934,106062118 -5 + chr9 106061565 106061619 chr9,106061565,106061694,+,L1ME5,LINE,L1,5710,5838,-356,106055856,106062050 -2 + chr9 106064636 106064825 chr9,106064365,106065198,-,HAL1,LINE,L1,-1233,1274,418,106063132,106065615 +1 - chr9 106279101 106279190 chr9,106279076,106279211,-,FLAM_C,SINE,Alu,-10,133,2,106279066,106279212 -3 - chr9 106450816 106450888 chr9,106450433,106450967,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,106450433,106450967 +1 + chr9 106500441 106500505 chr9,106500441,106501847,-,LTR12C,LTR,ERV1,0,1579,2,106500441,106501848 -4 - chr9 106558513 106558583 chr9,106558513,106558735,-,MIRb,SINE,MIR,-25,243,4,106558488,106558738 -4 - chr9 106591932 106591952 chr9,106591932,106592027,-,MIRc,SINE,MIR,-161,107,3,106591771,106592029 +1 - chr9 106603963 106604000 chr9,106603963,106604000,-,L2c,LINE,L2,-51,3336,3300,106603912,106607299 -6 - chr9 106604122 106604225 chr9,106604122,106604225,+,MIRb,SINE,MIR,7,107,-161,106604116,106604386 +6 + chr9 106604709 106604795 chr9,106604709,106604935,-,MIRb,SINE,MIR,-7,261,15,106604702,106604949 -5 - chr9 106666598 106666742 chr9,106666598,106666742,+,MIRc,SINE,MIR,14,163,-105,106666585,106666847 +6 + chr9 106667320 106667387 chr9,106667320,106667387,-,MLT1K,LTR,ERVL-MaLR,-354,241,174,106666966,106667560 -6 - chr9 106667562 106667659 chr9,106667562,106667659,+,MIR3,SINE,MIR,27,130,-78,106667536,106667737 +6 + chr9 106679558 106679573 chr9,106679543,106679573,-,MIR3,SINE,MIR,-61,147,118,106679482,106679690 -2 - chr9 106697924 106697969 chr9,106697924,106697969,+,(AAC)n,Simple_repeat,Simple_repeat,1,46,0,106697924,106697969 +6 + chr9 106702509 106702662 chr9,106702340,106702711,+,THE1C,LTR,ERVL-MaLR,1,375,0,106702340,106702711 +5 + chr9 106974933 106974961 chr9,106974933,106974961,+,MIR,SINE,MIR,229,256,-6,106974705,106974967 -6 + chr9 106975893 106976020 chr9,106975893,106976020,-,MIRc,SINE,MIR,-25,243,109,106975868,106976128 +6 - chr9 106976178 106976458 chr9,106976178,106976458,-,L4_A_Mam,LINE,RTE-X,-120,4870,4589,106976058,106981046 +6 - chr9 106976482 106976533 chr9,106976482,106976533,-,MIR1_Amn,SINE,MIR,-105,125,76,106976377,106976608 +6 - chr9 107061150 107061203 chr9,107060975,107061203,-,MIR3,SINE,MIR,-32,236,2,107060943,107061204 +4 - chr9 107097175 107097259 chr9,107097154,107097274,+,MIRb,SINE,MIR,65,197,-71,107097090,107097345 -3 + chr9 107102391 107102448 chr9,107102391,107102561,+,MIRb,SINE,MIR,80,262,0,107102312,107102561 -2 + chr9 107118090 107118197 chr9,107117920,107118388,-,MLT1F,LTR,ERVL-MaLR,-54,494,1,107117866,107118388 +3 - chr9 107121624 107121705 chr9,107121624,107121770,+,MLT1J1,LTR,ERVL-MaLR,71,220,-191,107121554,107121961 -1 + chr9 107420284 107420420 chr9,107420204,107420754,-,L1MC5,LINE,L1,-14,9290,8746,107420190,107429499 +5 - chr9 107427290 107427335 chr9,107427290,107427573,+,MER46C,DNA,TcMar-Tigger,1,316,-22,107427290,107427595 -2 + chr9 107428292 107428349 chr9,107428233,107428349,-,MIRc,SINE,MIR,-74,156,32,107428159,107428380 +4 - chr9 108252154 108252268 chr9,108252098,108252762,+,L1MC1,LINE,L1,5643,6333,0,108246456,108252762 -5 + chr9 108701406 108701442 chr9,108701406,108701448,-,MADE2,DNA,TcMar-Mariner,0,80,39,108701406,108701486 +2 - chr9 109760364 109760610 chr9,109760364,109760610,-,MIRb,SINE,MIR,-1,267,2,109760363,109760611 +6 - chr9 109765430 109765517 chr9,109765430,109765517,+,(TCA)n,Simple_repeat,Simple_repeat,1,87,0,109765430,109765517 -6 + chr9 109765526 109765560 chr9,109765526,109765677,-,MER5B,DNA,hAT-Charlie,-2,176,4,109765524,109765680 +2 - chr9 110599475 110599528 chr9,110598558,110599925,-,L1PA12,LINE,L1,-5517,1464,64,110593041,110599988 -1 - chr9 110605087 110605219 chr9,110605087,110605389,+,AluY,SINE,Alu,10,302,-9,110605078,110605398 +5 + chr9 111139246 111139619 chr9,111139141,111139675,-,L3,LINE,CR1,-355,3744,3166,111138786,111142840 +5 - chr9 111284620 111284669 chr9,111284472,111284669,-,MIRc,SINE,MIR,-32,236,13,111284440,111284681 +4 - chr9 111574337 111574394 chr9,111574337,111574580,-,AluJb,SINE,Alu,0,312,69,111574337,111574648 -4 - chr9 112032555 112032611 chr9,112032131,112032611,+,L1MA9,LINE,L1,5817,6312,0,112026315,112032611 -5 + chr9 112035622 112035783 chr9,112035622,112035783,+,LTR78B,LTR,ERV1,486,646,-650,112035137,112036433 -6 + chr9 112035905 112036213 chr9,112035905,112036213,+,AluSx,SINE,Alu,1,299,-13,112035905,112036226 -6 + chr9 112036257 112036310 chr9,112036257,112036338,+,L1ME4b,LINE,L1,4735,4833,-1313,112031523,112037651 -1 + chr9 112036651 112036688 chr9,112036397,112036688,-,AluJb,SINE,Alu,-12,300,1,112036385,112036688 +4 - chr9 112036691 112036827 chr9,112036691,112036827,-,AluJr,SINE,Alu,-174,138,1,112036517,112036827 +6 - chr9 112037138 112037568 chr9,112037138,112037568,+,L1ME4b,LINE,L1,154,543,-349,112036985,112037917 -6 + chr9 112469723 112469804 chr9,112469710,112469804,+,MIRb,SINE,MIR,43,139,-129,112469668,112469933 -4 + chr9 112469809 112469837 chr9,112469809,112469890,-,L2a,LINE,L2,-32,3394,3307,112469777,112473196 +2 - chr9 112484442 112484624 chr9,112484289,112484624,-,L1MEg,LINE,L1,-5748,494,163,112478541,112484786 +5 - chr9 112484930 112485361 chr9,112484693,112485361,-,L1MB2,LINE,L1,-5,6166,5509,112484688,112490869 +5 - chr9 112748976 112749178 chr9,112748976,112749178,-,MIRb,SINE,MIR,-8,260,60,112748968,112749237 +6 - chr9 112885424 112885457 chr9,112885424,112885457,+,(TA)n,Simple_repeat,Simple_repeat,1,33,0,112885424,112885457 +6 + chr9 112885546 112885767 chr9,112885546,112885864,+,MER33,DNA,hAT-Charlie,3,324,0,112885544,112885864 +5 + chr9 112998476 112998819 chr9,112998476,112998819,+,Tigger7,DNA,TcMar-Tigger,1,339,0,112998476,112998819 -6 + chr9 112999665 112999814 chr9,112999325,112999997,-,MER21C,LTR,ERVL,-13,925,106,112999312,113000102 +3 - chr9 113103818 113103846 chr9,113103818,113103846,+,(TGTT)n,Simple_repeat,Simple_repeat,1,28,0,113103818,113103846 -6 + chr9 113103952 113104012 chr9,113103952,113104012,+,MER5A,DNA,hAT-Charlie,126,183,-6,113103827,113104018 -6 + chr9 113104144 113104446 chr9,113104144,113104446,-,AluSq2,SINE,Alu,-13,300,1,113104131,113104446 +6 - chr9 113105069 113105136 chr9,113105069,113105136,+,MIRc,SINE,MIR,71,132,-136,113104999,113105272 -6 + chr9 113105277 113105494 chr9,113105277,113105494,+,MIR,SINE,MIR,1,245,-17,113105277,113105511 -6 + chr9 113105877 113105916 chr9,113105877,113105916,+,(TGTG)n,Simple_repeat,Simple_repeat,1,39,0,113105877,113105916 -6 + chr9 113106607 113106984 chr9,113106607,113106984,+,MLT1A0,LTR,ERVL-MaLR,2,364,-1,113106606,113106985 -6 + chr9 113111479 113111500 chr9,113111479,113111513,+,(CGGTC)n,Simple_repeat,Simple_repeat,1,34,0,113111479,113111513 -1 + chr9 113113073 113113093 chr9,113113059,113113093,+,(ACCGG)n,Simple_repeat,Simple_repeat,1,34,0,113113059,113113093 +1 + chr9 113117588 113117965 chr9,113117588,113117965,-,MLT1A0,LTR,ERVL-MaLR,-1,364,2,113117587,113117966 -6 - chr9 113118656 113118695 chr9,113118656,113118695,+,(ACACAC)n,Simple_repeat,Simple_repeat,1,39,0,113118656,113118695 +6 + chr9 113119078 113119295 chr9,113119078,113119295,-,MIR,SINE,MIR,-17,245,1,113119061,113119295 -6 - chr9 113119433 113119497 chr9,113119433,113119497,-,MIRc,SINE,MIR,-136,132,71,113119297,113119567 -6 - chr9 113119918 113119928 chr9,113119918,113120207,+,AluSq2,SINE,Alu,2,287,-26,113119917,113120233 +5 + chr9 113570221 113570321 chr9,113570221,113570321,+,MIR,SINE,MIR,139,243,-19,113570083,113570340 -6 + chr9 113589896 113589950 chr9,113589744,113589950,-,MIRb,SINE,MIR,-10,258,27,113589734,113589976 +4 - chr9 113619228 113619408 chr9,113619169,113619408,-,LTR33,LTR,ERVL,-115,400,151,113619054,113619558 -1 - chr9 113619929 113619991 chr9,113619929,113619991,-,MIR3,SINE,MIR,-31,177,116,113619898,113620106 -6 - chr9 113620437 113620555 chr9,113620437,113620555,-,MIR3,SINE,MIR,0,208,89,113620437,113620643 -6 - chr9 113620871 113621028 chr9,113620871,113621028,-,MIR3,SINE,MIR,-8,200,39,113620863,113621066 -6 - chr9 113621054 113621215 chr9,113621054,113621215,-,MER20,DNA,hAT-Charlie,-2,217,39,113621052,113621253 -6 - chr9 113621700 113621824 chr9,113621700,113621824,+,MIR3,SINE,MIR,32,149,-119,113621669,113621943 +6 + chr9 113622293 113622626 chr9,113622293,113622626,-,Tigger15a,DNA,TcMar-Tigger,-3,712,351,113622290,113622976 -6 - chr9 113650956 113651164 chr9,113650949,113651170,+,MIR,SINE,MIR,16,255,-13,113650934,113651183 +1 + chr9 113652062 113652080 chr9,113652062,113652113,-,MER5A,DNA,hAT-Charlie,-124,65,13,113651938,113652125 -4 - chr9 113682271 113682328 chr9,113682271,113682328,+,A-rich,Low_complexity,Low_complexity,1,59,0,113682271,113682328 +6 + chr9 114396724 114396765 chr9,114396707,114396765,-,MIR1_Amn,SINE,MIR,-63,167,110,114396644,114396874 +5 - chr9 115119686 115119708 chr9,115119686,115119779,+,MIR3,SINE,MIR,112,204,-4,115119575,115119783 -2 + chr9 115122797 115122872 chr9,115122747,115122960,+,MIRc,SINE,MIR,46,232,-36,115122702,115122996 -3 + chr9 115127353 115127498 chr9,115127353,115127498,-,MamRep434,DNA,TcMar-Tigger,-37,389,242,115127316,115127739 +6 - chr9 115127593 115127627 chr9,115127593,115127662,+,MADE2,DNA,TcMar-Mariner,12,80,0,115127582,115127662 -2 + chr9 115138353 115138409 chr9,115138353,115138701,+,MLT1A0,LTR,ERVL-MaLR,3,365,0,115138351,115138701 -1 + chr9 115253113 115253163 chr9,115252876,115253234,+,MLT1A0,LTR,ERVL-MaLR,1,357,-8,115252876,115253242 -3 + chr9 115741495 115741562 chr9,115741495,115741578,+,MIR,SINE,MIR,61,148,-114,115741435,115741692 -2 + chr9 115744157 115744239 chr9,115743858,115744555,-,MER50B,LTR,ERV1,0,697,1,115743858,115744555 +1 - chr9 115888169 115888323 chr9,115888118,115888323,-,MIRb,SINE,MIR,-4,264,36,115888114,115888358 +5 - chr9 115925023 115925207 chr9,115924778,115926165,+,L2a,LINE,L2,1920,3377,-10,115922859,115926175 -1 + chr9 116012361 116012530 chr9,116012352,116012579,+,MIR,SINE,MIR,13,241,-21,116012340,116012600 +1 + chr9 116012691 116012891 chr9,116012691,116012891,-,L2,LINE,L2,-874,2545,2354,116011817,116015244 -6 - chr9 116012891 116012965 chr9,116012891,116013332,-,MLT1C,LTR,ERVL-MaLR,-3,464,1,116012888,116013332 -5 - chr9 116286795 116286989 chr9,116286795,116286989,-,MIRb,SINE,MIR,-36,232,34,116286759,116287022 +6 - chr9 116287096 116287236 chr9,116287096,116287236,+,MIRb,SINE,MIR,99,241,-27,116286998,116287263 -6 + chr9 116287565 116287588 chr9,116287565,116287677,-,L3,LINE,CR1,-90,4009,3897,116287475,116291573 +2 - chr9 116316314 116316342 chr9,116316162,116316342,-,MIRb,SINE,MIR,-50,218,26,116316112,116316367 +4 - chr9 116398479 116398510 chr9,116398479,116398510,+,A-rich,Low_complexity,Low_complexity,1,31,0,116398479,116398510 -6 + chr9 116399033 116399084 chr9,116399033,116399084,-,MamTip2,DNA,hAT-Tip100,-139,166,115,116398894,116399198 +6 - chr9 116400018 116400059 chr9,116400018,116400059,+,(GAAA)n,Simple_repeat,Simple_repeat,1,44,0,116400018,116400059 -6 + chr9 116545749 116545807 chr9,116545718,116545807,-,L2b,LINE,L2,-4,3383,3296,116545714,116549102 -2 - chr9 116547314 116547434 chr9,116547227,116547446,-,MIRc,SINE,MIR,0,268,39,116547227,116547484 -3 - chr9 116547537 116547682 chr9,116547454,116547705,+,MIR,SINE,MIR,1,248,-14,116547454,116547719 +3 + chr9 116562125 116562293 chr9,116562125,116562399,-,MER103C,DNA,hAT-Charlie,0,297,10,116562125,116562408 -5 - chr9 116582110 116582290 chr9,116582110,116582290,+,MIR3,SINE,MIR,19,206,-2,116582092,116582292 +6 + chr9 116582385 116582429 chr9,116582385,116582429,-,MIR,SINE,MIR,0,262,218,116582385,116582646 -6 - chr9 116582449 116582553 chr9,116582449,116582553,-,MIRb,SINE,MIR,-135,133,29,116582314,116582581 -6 - chr9 116582621 116582736 chr9,116582621,116582736,-,L2c,LINE,L2,0,3387,3270,116582621,116586005 -6 - chr9 116582916 116583027 chr9,116582916,116583027,-,L2a,LINE,L2,-2,3424,3309,116582914,116586335 -6 - chr9 116583366 116583506 chr9,116583366,116583506,+,L2a,LINE,L2,3212,3387,-39,116580155,116583545 +6 + chr9 116583594 116583685 chr9,116583594,116583685,-,MIR3,SINE,MIR,-68,140,48,116583526,116583732 -6 - chr9 116584455 116584804 chr9,116584455,116584804,+,L1M3,LINE,L1,3889,4241,-1899,116580567,116586703 +6 + chr9 116584862 116584916 chr9,116584862,116584916,+,MIR3,SINE,MIR,135,189,-19,116584728,116584935 +6 + chr9 116585154 116585384 chr9,116585154,116585384,+,MIRb,SINE,MIR,3,258,-10,116585152,116585394 +6 + chr9 116585452 116586328 chr9,116585452,116586810,+,L1PA16,LINE,L1,4775,6157,-9,116580678,116586819 +5 + chr9 117462294 117462374 chr9,117462090,117462374,-,L2c,LINE,L2,-1,3374,3093,117462089,117465466 +5 - chr9 117462390 117462559 chr9,117462390,117462559,-,MIRb,SINE,MIR,-73,195,4,117462317,117462562 +6 - chr9 117466000 117466092 chr9,117466000,117466092,+,L2c,LINE,L2,3235,3349,-38,117462766,117466130 -6 + chr9 117648676 117648695 chr9,117648676,117648827,-,MER5A,DNA,hAT-Charlie,0,189,40,117648676,117648866 -4 - chr9 117650893 117650977 chr9,117650893,117651002,-,LTR83,LTR,ERVL,-664,116,4,117650229,117651005 -4 - chr9 117652358 117652447 chr9,117652358,117652593,+,MIRb,SINE,MIR,51,268,0,117652308,117652593 +4 + chr9 117653631 117653676 chr9,117653446,117653676,-,MER20,DNA,hAT-Charlie,-4,215,1,117653442,117653676 -2 - chr9 117655608 117655670 chr9,117655561,117655670,+,L4_B_Mam,LINE,RTE-X,4833,4937,-4,117650729,117655674 +2 + chr9 117656396 117656466 chr9,117656237,117656466,-,Tigger15a,DNA,TcMar-Tigger,-271,444,166,117655966,117656631 -2 - chr9 117656587 117656876 chr9,117656587,117656876,+,Helitron1Nb_Mam,RC,Helitron,26,327,-789,117656562,117657665 +6 + chr9 117656881 117657027 chr9,117656881,117657097,+,Helitron1Na_Mam,RC,Helitron,820,1062,0,117656062,117657097 +5 + chr9 117783448 117783458 chr9,117783409,117783458,+,GA-rich,Low_complexity,Low_complexity,1,50,0,117783409,117783458 +1 + chr9 117840440 117840498 chr9,117840440,117840498,-,MIR3,SINE,MIR,0,208,150,117840440,117840647 +6 - chr9 117870044 117870155 chr9,117869810,117870155,+,LTR16A,LTR,ERVL,71,443,-8,117869740,117870163 -4 + chr9 118687789 118688003 chr9,118687789,118688128,-,MLT1H,LTR,ERVL-MaLR,-102,447,71,118687687,118688198 +2 - chr9 118740625 118740649 chr9,118740625,118740697,-,MIR1_Amn,SINE,MIR,-82,148,79,118740543,118740775 -4 - chr9 118745144 118745312 chr9,118744860,118745372,+,LTR16E2,LTR,ERVL,22,565,-3,118744839,118745375 +5 + chr9 119523121 119523290 chr9,119523121,119523290,-,L2c,LINE,L2,-31,3356,3148,119523090,119526437 -6 - chr9 119523904 119524125 chr9,119523904,119524184,+,MLT1H,LTR,ERVL-MaLR,272,549,0,119523633,119524184 +5 + chr9 119935053 119935196 chr9,119935009,119935196,+,MIR3,SINE,MIR,18,201,-7,119934992,119935203 +1 + chr9 119935216 119935432 chr9,119935216,119935432,-,MIRb,SINE,MIR,-24,244,36,119935192,119935467 -6 - chr9 119935935 119935991 chr9,119935935,119935991,-,MIR,SINE,MIR,-98,164,108,119935837,119936098 -6 - chr9 119936053 119936559 chr9,119936053,119936559,+,MLT1J,LTR,ERVL-MaLR,1,504,-8,119936053,119936567 +6 + chr9 119936688 119936859 chr9,119936688,119936859,-,MER104,DNA,TcMar-Tc2,-6,175,1,119936682,119936859 -6 - chr9 119937472 119937565 chr9,119937472,119937565,-,L3,LINE,CR1,-2,4097,4001,119937470,119941565 -6 - chr9 119974137 119974272 chr9,119974041,119974272,-,MIRb,SINE,MIR,-8,254,1,119974033,119974272 -2 - chr9 120824828 120824970 chr9,120824734,120825098,+,L3,LINE,CR1,3603,3999,-100,120821132,120825198 +1 + chr9 120841806 120842265 chr9,120841789,120842265,+,LTR42,LTR,ERVL,1,492,-3,120841789,120842268 +1 + chr9 120842265 120842373 chr9,120842265,120842373,-,L1ME4b,LINE,L1,-463,429,323,120841802,120842695 -6 - chr9 120844300 120844657 chr9,120844052,120844657,+,Tigger12,DNA,TcMar-Tigger,720,1355,-1120,120843333,120845777 +1 + chr9 120844709 120844922 chr9,120844709,120844922,+,Tigger7,DNA,TcMar-Tigger,1424,1652,-839,120843286,120845761 +1 + chr9 120845464 120845482 chr9,120845464,120845482,+,(TG)n,Simple_repeat,Simple_repeat,1,18,0,120845464,120845482 +1 + chr9 120846772 120846815 chr9,120846772,120846815,+,Charlie19a,DNA,hAT-Charlie,343,384,-2,120846430,120846817 +6 + chr9 120846916 120847011 chr9,120846916,120847011,-,MIR3,SINE,MIR,-101,107,5,120846815,120847015 -6 - chr9 120850450 120850527 chr9,120850450,120850527,-,MIRb,SINE,MIR,-41,189,120,120850409,120850646 -6 - chr9 120852756 120852794 chr9,120852756,120852794,+,L2c,LINE,L2,3040,3077,-310,120849717,120853104 +6 + chr9 120852914 120852975 chr9,120852914,120852975,+,L2c,LINE,L2,3281,3344,-43,120849634,120853018 +6 + chr9 120853231 120853399 chr9,120853231,120853399,-,MIRb,SINE,MIR,-36,232,24,120853195,120853422 -6 - chr9 120853527 120853807 chr9,120853527,120853807,+,AluSc,SINE,Alu,3,282,-27,120853525,120853834 +6 + chr9 120853807 120853826 chr9,120853807,120853826,+,(TA)n,Simple_repeat,Simple_repeat,1,19,0,120853807,120853826 +6 + chr9 120853964 120854373 chr9,120853964,120854708,-,MER99,DNA,hAT?,-1,830,1,120853963,120854708 -5 - chr9 121280328 121280438 chr9,121280328,121280536,-,L2b,LINE,L2,0,3387,3187,121280328,121283722 +2 - chr9 121280768 121280804 chr9,121280665,121280804,-,MIR,SINE,MIR,-39,229,64,121280626,121280867 +5 - chr9 121280857 121281205 chr9,121280857,121281205,+,CR1-3_Croc,LINE,CR1,2450,2825,-780,121278408,121281985 -6 + chr9 121281205 121281455 chr9,121281205,121281455,+,L3,LINE,CR1,3838,4091,-8,121277368,121281463 -6 + chr9 121281751 121281897 chr9,121281751,121281897,+,MIRc,SINE,MIR,6,146,-84,121281746,121281981 -6 + chr9 121282190 121282305 chr9,121282190,121282305,+,MIRc,SINE,MIR,120,235,-33,121282071,121282338 -6 + chr9 121283285 121283597 chr9,121283285,121283597,-,AluSz,SINE,Alu,0,312,1,121283285,121283597 +6 - chr9 121283671 121283721 chr9,121283671,121283721,+,(TTCA)n,Simple_repeat,Simple_repeat,1,51,0,121283671,121283721 -6 + chr9 121283733 121284201 chr9,121283733,121284201,-,L2b,LINE,L2,-44,3331,2814,121283689,121287014 +6 - chr9 121284718 121284857 chr9,121284718,121284857,-,L2,LINE,L2,-537,2882,2745,121284181,121287601 +6 - chr9 121285032 121285217 chr9,121285032,121285217,+,MIRb,SINE,MIR,34,236,-32,121284999,121285249 -6 + chr9 121285439 121285493 chr9,121285439,121285493,+,L2b,LINE,L2,3279,3337,-38,121282161,121285531 -6 + chr9 121576075 121576214 chr9,121576003,121576617,+,L2b,LINE,L2,2627,3271,-104,121573377,121576721 -1 + chr9 121816068 121816219 chr9,121816068,121816219,-,MIRb,SINE,MIR,-114,154,1,121815954,121816219 +6 - chr9 121816533 121816730 chr9,121816533,121816730,+,(GT)n,Simple_repeat,Simple_repeat,1,199,0,121816533,121816730 -6 + chr9 121817421 121817523 chr9,121817421,121817523,-,MIRc,SINE,MIR,-7,261,168,121817414,121817690 +6 - chr9 121817720 121817925 chr9,121817720,121817925,+,MIRc,SINE,MIR,13,237,-31,121817708,121817956 -6 + chr9 121885122 121885311 chr9,121885122,121885311,+,L2b,LINE,L2,2391,2589,-830,121882732,121886141 -6 + chr9 121885454 121885575 chr9,121885454,121885716,-,MIR,SINE,MIR,-22,246,9,121885432,121885724 +2 - chr9 122330867 122330929 chr9,122330647,122330929,+,AluSx1,SINE,Alu,1,282,-30,122330647,122330959 +1 + chr9 122404672 122404791 chr9,122404652,122404839,-,AluJo,SINE,Alu,-18,294,132,122404634,122404970 -3 - chr9 122415714 122415782 chr9,122415011,122416061,-,L1ME2,LINE,L1,-1763,4383,3337,122413248,122419397 -3 - chr9 122416768 122416885 chr9,122416739,122417033,-,AluSx1,SINE,Alu,-7,305,1,122416732,122417033 -3 - chr9 122448930 122448977 chr9,122448924,122448988,+,FLAM_C,SINE,Alu,73,133,-10,122448852,122448998 +5 + chr9 122471358 122471413 chr9,122471134,122471489,+,THE1A,LTR,ERVL-MaLR,1,355,0,122471134,122471489 +1 + chr9 122475692 122475736 chr9,122475400,122475736,-,LTR78,LTR,ERV1,-958,346,1,122474442,122475736 -2 - chr9 122619358 122619489 chr9,122619024,122619489,+,L1M4,LINE,L1,4265,4753,-1393,122614760,122620882 +1 + chr9 122619490 122619562 chr9,122619490,122619562,+,L1P1,LINE,L1,4480,4551,-1595,122615011,122621157 +6 + chr9 122620448 122620515 chr9,122620340,122620919,-,HERVK9-int,LTR,ERVK,-5441,580,1,122614899,122620919 -3 - chr9 122639598 122639663 chr9,122639532,122639663,+,MIRb,SINE,MIR,66,198,-70,122639467,122639733 +2 + chr9 122937623 122937711 chr9,122937622,122937711,+,L1M4c,LINE,L1,957,1042,-5342,122936666,122943053 +1 + chr9 122937711 122937995 chr9,122937711,122937995,+,AluSg,SINE,Alu,1,290,-20,122937711,122938015 +6 + chr9 122937995 122938113 chr9,122937995,122938113,+,L1M4c,LINE,L1,1043,1151,-5233,122936953,122943346 +6 + chr9 122938122 122938441 chr9,122938122,122938441,+,L2,LINE,L2,2635,2990,-429,122935488,122938870 +6 + chr9 122938726 122938934 chr9,122938726,122938934,+,L1MC5a,LINE,L1,2087,2304,-473,122936640,122939407 +6 + chr9 122939328 122939382 chr9,122939328,122939471,-,FLAM_C,SINE,Alu,-6,137,1,122939322,122939471 -1 - chr9 122939420 122939471 chr9,122939328,122939471,-,FLAM_C,SINE,Alu,-6,137,1,122939322,122939471 -1 - chr9 122940016 122940156 chr9,122940016,122940156,+,FAM,SINE,Alu,1,138,-47,122940016,122940203 +6 + chr9 123113800 123113992 chr9,123113800,123113992,+,MER58A,DNA,hAT-Charlie,1,219,-5,123113800,123113997 -6 + chr9 123751570 123751941 chr9,123751570,123752023,+,L2c,LINE,L2,2834,3306,-81,123748737,123752104 +5 + chr9 124007576 124007606 chr9,124007576,124007606,+,(AC)n,Simple_repeat,Simple_repeat,1,30,0,124007576,124007606 -6 + chr9 124010729 124010829 chr9,124010729,124010958,-,MIR,SINE,MIR,-13,249,2,124010716,124010959 -4 - chr9 124031624 124031870 chr9,124031528,124031870,-,MER33,DNA,hAT-Charlie,-6,318,1,124031522,124031870 +5 - chr9 124031972 124032067 chr9,124031951,124032272,+,AluJr,SINE,Alu,1,312,0,124031951,124032272 -3 + chr9 124261094 124261117 chr9,124260970,124261117,-,MIR,SINE,MIR,-99,169,4,124260871,124261120 +4 - chr9 124265580 124265635 chr9,124265547,124265635,-,MIR3,SINE,MIR,-52,178,83,124265495,124265717 -2 - chr9 124514961 124515006 chr9,124514961,124515006,+,L2b,LINE,L2,3319,3363,-12,124511643,124515018 -6 + chr9 124515000 124515084 chr9,124515000,124515209,+,MIR,SINE,MIR,54,268,0,124514947,124515209 -2 + chr9 124515938 124516002 chr9,124515783,124516002,+,MIRb,SINE,MIR,11,230,-38,124515773,124516040 -4 + chr9 124698245 124698268 chr9,124698225,124698268,+,U5,snRNA,snRNA,2,44,-72,124698224,124698340 +2 + chr9 124698566 124698631 chr9,124698566,124698636,+,L2b,LINE,L2,3304,3375,0,124695263,124698636 +5 + chr9 124772819 124772887 chr9,124772819,124772887,+,L2a,LINE,L2,3098,3166,-221,124769722,124773108 +6 + chr9 125567579 125567732 chr9,125567192,125567732,+,MER41A,LTR,ERV1,1,554,0,125567192,125567732 +1 + chr9 125567816 125567896 chr9,125567816,125567896,+,MER41-int,LTR,ERV1,1,102,-5844,125567816,125573740 +6 + chr9 125567905 125567993 chr9,125567905,125569515,+,MER41-int,LTR,ERV1,1,1775,-4171,125567905,125573686 +4 + chr9 125568761 125568849 chr9,125567905,125569515,+,MER41-int,LTR,ERV1,1,1775,-4171,125567905,125573686 +3 + chr9 125572895 125573023 chr9,125571883,125573107,+,PABL_A-int,LTR,ERV1,3812,5941,-5,125568072,125573112 +5 + chr9 125744347 125744646 chr9,125744345,125744646,-,AluSx3,SINE,Alu,0,311,10,125744345,125744655 +5 - chr9 125744806 125744850 chr9,125744806,125744850,-,MIR3,SINE,MIR,0,208,165,125744806,125745014 +6 - chr9 126159533 126159613 chr9,126159456,126159675,-,UCON15,Unknown,Unknown,-79,268,46,126159377,126159720 -5 - chr9 126270121 126270328 chr9,126269938,126270328,+,L1MA3,LINE,L1,5878,6305,0,126264061,126270328 -5 + chr9 126270328 126270339 chr9,126270328,126270339,+,AluYc,SINE,Alu,282,290,-9,126270047,126270348 -6 + chr9 126270345 126270837 chr9,126270345,126270837,+,MLT1D,LTR,ERVL-MaLR,1,501,-4,126270345,126270841 -6 + chr9 126271072 126271099 chr9,126271072,126271099,+,(AATAA)n,Simple_repeat,Simple_repeat,1,27,0,126271072,126271099 -6 + chr9 126271248 126271527 chr9,126271248,126271527,-,LTR79,LTR,ERVL,-239,288,6,126271009,126271532 +6 - chr9 126271531 126271676 chr9,126271531,126271676,-,MIRb,SINE,MIR,-14,254,102,126271517,126271777 +6 - chr9 126272243 126272400 chr9,126272187,126272640,-,HAL1,LINE,L1,-4,2503,2013,126272183,126274652 +3 - chr9 126518841 126519074 chr9,126518841,126519074,-,MIRb,SINE,MIR,-4,258,20,126518837,126519093 -6 - chr9 126519106 126519410 chr9,126519106,126519410,-,L1ME4b,LINE,L1,-23,869,533,126519083,126519942 -6 - chr9 126519410 126519500 chr9,126519410,126519500,+,MADE2,DNA,TcMar-Mariner,2,79,-1,126519409,126519501 +6 + chr9 126519500 126519650 chr9,126519500,126519650,-,L1ME4b,LINE,L1,-360,532,373,126519140,126520022 -6 - chr9 126519650 126519754 chr9,126519650,126519754,+,MIR3,SINE,MIR,82,193,-15,126519569,126519769 +6 + chr9 126590410 126590442 chr9,126590226,126590442,+,L1ME4a,LINE,L1,5797,6040,-84,126584430,126590526 -4 + chr9 126590442 126590543 chr9,126590442,126590741,+,AluJr,SINE,Alu,1,305,-7,126590442,126590748 -2 + chr9 126609144 126609214 chr9,126609140,126609371,-,MIR,SINE,MIR,-5,257,1,126609135,126609371 +3 - chr9 126612446 126612458 chr9,126612417,126612458,+,(ACAC)n,Simple_repeat,Simple_repeat,1,41,0,126612417,126612458 -4 + chr9 126641268 126641293 chr9,126641268,126641500,-,MIRb,SINE,MIR,-1,267,26,126641267,126641525 -5 - chr9 126700563 126700645 chr9,126700563,126700645,+,(CACGCA)n,Simple_repeat,Simple_repeat,1,82,0,126700563,126700645 +6 + chr9 126700903 126700947 chr9,126700903,126700947,+,(CCCCAC)n,Simple_repeat,Simple_repeat,1,44,0,126700903,126700947 +6 + chr9 127214149 127214182 chr9,127214149,127214573,+,Charlie4a,DNA,hAT-Charlie,18,504,-4,127214132,127214577 -2 + chr9 127216119 127216179 chr9,127216119,127216348,+,L3,LINE,CR1,3103,3379,-720,127213017,127217068 -2 + chr9 127816322 127816476 chr9,127816322,127816476,+,MIR3,SINE,MIR,21,186,-22,127816302,127816498 +6 + chr9 127817285 127817343 chr9,127817285,127817349,+,MIR,SINE,MIR,30,100,-162,127817256,127817511 +4 + chr9 127817822 127817857 chr9,127817822,127817890,+,(TGGA)n,Simple_repeat,Simple_repeat,1,68,0,127817822,127817890 +4 + chr9 127821195 127821447 chr9,127821149,127821447,+,AluSx1,SINE,Alu,1,299,-13,127821149,127821460 +5 + chr9 127821447 127821498 chr9,127821447,127821611,+,AluSx,SINE,Alu,1,135,-177,127821447,127821788 +4 + chr9 127822338 127822520 chr9,127822222,127822821,+,L1ME4c,LINE,L1,312,726,-104,127821911,127822925 +5 + chr9 127938148 127938276 chr9,127938148,127938276,-,MIR3,SINE,MIR,-91,177,28,127938057,127938303 -6 - chr9 127938582 127938662 chr9,127938582,127938665,+,L2b,LINE,L2,3064,3148,-227,127935519,127938892 +4 + chr9 127938750 127938808 chr9,127938685,127938808,-,FLAM_C,SINE,Alu,-10,133,1,127938675,127938808 -1 - chr9 127938850 127938928 chr9,127938850,127938928,+,L2b,LINE,L2,3258,3346,-29,127935593,127938957 +6 + chr9 127938928 127939237 chr9,127938928,127939237,-,AluSx,SINE,Alu,-4,308,1,127938924,127939237 -6 - chr9 127939736 127939783 chr9,127939490,127939783,-,AluSx1,SINE,Alu,-8,304,1,127939482,127939783 -1 - chr9 127940185 127940263 chr9,127940185,127940263,-,MIRc,SINE,MIR,-77,191,117,127940108,127940379 -6 - chr9 128039135 128039193 chr9,128039131,128039193,-,Kanga1,DNA,TcMar-Tc2,-151,1594,1532,128038980,128040724 +5 - chr9 128039195 128039307 chr9,128039195,128039493,+,AluJb,SINE,Alu,2,297,-15,128039194,128039508 -2 + chr9 128057156 128057287 chr9,128056986,128057287,+,MER76,LTR,ERVL,314,638,-53,128056673,128057340 -4 + chr9 128090972 128091066 chr9,128090972,128091066,-,L2c,LINE,L2,-31,3356,3262,128090941,128094327 +6 - chr9 128091535 128091561 chr9,128091535,128091561,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,128091535,128091561 -6 + chr9 128108583 128108623 chr9,128108583,128108623,+,(TCATGT)n,Simple_repeat,Simple_repeat,1,41,0,128108583,128108623 -6 + chr9 128109545 128110053 chr9,128109545,128110053,+,L2a,LINE,L2,2253,2817,-602,128107293,128110655 -6 + chr9 128110056 128110216 chr9,128110056,128110216,+,AluSx1,SINE,Alu,135,294,-18,128109922,128110234 -6 + chr9 128110262 128110577 chr9,128110262,128110577,+,AluSx,SINE,Alu,1,312,0,128110262,128110577 -6 + chr9 128110643 128110797 chr9,128110643,128110797,+,L1ME2,LINE,L1,5338,5425,-739,128105306,128111536 -6 + chr9 128110797 128110920 chr9,128110797,128110920,+,AluJr,SINE,Alu,1,124,-188,128110797,128111108 -6 + chr9 128110920 128111356 chr9,128110920,128111356,+,L1ME2,LINE,L1,5426,5874,-290,128105495,128111646 -6 + chr9 128111356 128111643 chr9,128111356,128111643,+,AluSx1,SINE,Alu,21,305,-7,128111336,128111650 -6 + chr9 128111643 128111812 chr9,128111643,128111812,+,L1ME2,LINE,L1,5875,6017,-147,128105769,128111959 -6 + chr9 128111840 128111957 chr9,128111840,128111957,+,AluSx,SINE,Alu,1,116,-196,128111840,128112153 -6 + chr9 128111957 128112273 chr9,128111957,128112273,+,AluSc8,SINE,Alu,2,310,-1,128111956,128112274 -6 + chr9 128112273 128112469 chr9,128112273,128112469,+,AluSx,SINE,Alu,117,306,-6,128112157,128112475 -6 + chr9 128112524 128112649 chr9,128112524,128112829,-,AluSq2,SINE,Alu,-8,305,1,128112516,128112829 +2 - chr9 128113478 128113520 chr9,128113305,128113520,+,L2a,LINE,L2,3175,3415,-11,128110131,128113531 -4 + chr9 128113521 128113996 chr9,128113521,128113996,+,MLT1D,LTR,ERVL-MaLR,1,461,-44,128113521,128114040 -6 + chr9 128114394 128114572 chr9,128114394,128114572,+,MIRb,SINE,MIR,4,209,-59,128114391,128114631 -6 + chr9 128115112 128115246 chr9,128115112,128115246,+,MIRb,SINE,MIR,16,165,-65,128115097,128115311 -6 + chr9 128118363 128118459 chr9,128118363,128118459,+,MLT1K,LTR,ERVL-MaLR,129,223,-319,128118235,128118778 -6 + chr9 128128871 128128949 chr9,128128871,128128949,-,MIR1_Amn,SINE,MIR,-84,184,96,128128787,128129044 -6 - chr9 128129466 128130466 chr9,128129466,128130475,-,LTR13,LTR,ERVK,0,1007,1,128129466,128130475 -5 - chr9 128305161 128305260 chr9,128305151,128305260,-,MIR,SINE,MIR,-98,164,37,128305053,128305296 +5 - chr9 128305379 128305515 chr9,128305379,128305688,-,AluSz,SINE,Alu,-12,300,1,128305367,128305688 +1 - chr9 128316337 128316407 chr9,128316028,128316407,+,AluSx1,SINE,Alu,1,297,-15,128316028,128316422 +1 + chr9 128316798 128316909 chr9,128316798,128316968,+,MIRb,SINE,MIR,79,268,0,128316720,128316968 +5 + chr9 128393110 128393145 chr9,128393110,128393145,+,(CCCCCG)n,Simple_repeat,Simple_repeat,1,37,0,128393110,128393145 -6 + chr9 128431598 128431818 chr9,128431477,128431818,-,L2b,LINE,L2,-5,3370,2982,128431472,128434799 -1 - chr9 128536827 128536867 chr9,128536781,128536867,-,MIR3,SINE,MIR,-18,190,104,128536763,128536970 +4 - chr9 128543379 128543405 chr9,128543267,128543405,+,Charlie17a,DNA,hAT-Charlie,2,170,-47,128543266,128543452 -4 + chr9 128543405 128543686 chr9,128543405,128543710,+,AluSg,SINE,Alu,3,303,-7,128543403,128543717 -1 + chr9 128552368 128552379 chr9,128552301,128552379,+,(CCCTCGC)n,Simple_repeat,Simple_repeat,1,81,0,128552301,128552379 -4 + chr9 128724490 128724565 chr9,128724490,128724565,-,MIRb,SINE,MIR,-101,167,92,128724389,128724656 -6 - chr9 128732842 128733133 chr9,128732712,128733133,+,L5,LINE,RTE-X,1798,2265,0,128730915,128733133 +2 + chr9 129004502 129004802 chr9,129004496,129004802,-,AluY,SINE,Alu,-4,307,1,129004492,129004802 +5 - chr9 129097885 129097958 chr9,129097885,129097958,+,L2b,LINE,L2,3300,3373,-2,129094586,129097960 +6 + chr9 129170728 129170812 chr9,129170728,129170812,+,L2c,LINE,L2,3148,3237,-150,129167581,129170962 +6 + chr9 129170840 129170940 chr9,129170840,129171007,-,L1ME4a,LINE,L1,-1,6123,5951,129170839,129176957 -5 - chr9 129177102 129177130 chr9,129177102,129177130,+,(TCC)n,Simple_repeat,Simple_repeat,1,28,0,129177102,129177130 +6 + chr9 129208869 129209083 chr9,129208847,129209083,+,L2c,LINE,L2,3094,3340,-35,129205754,129209118 +2 + chr9 129209548 129209681 chr9,129209548,129209681,+,L2b,LINE,L2,3249,3375,0,129206300,129209681 +6 + chr9 129209705 129209841 chr9,129209705,129209841,+,L1MB3,LINE,L1,5676,5803,-380,129204030,129210221 +6 + chr9 129209841 129210135 chr9,129209841,129210135,-,AluSz,SINE,Alu,-20,292,1,129209821,129210135 -6 - chr9 129210135 129210222 chr9,129210135,129210222,+,L1MB3,LINE,L1,5804,5892,-291,129204332,129210513 +6 + chr9 129210222 129210344 chr9,129210222,129210344,+,FLAM_C,SINE,Alu,2,204,-98,129210221,129210442 +6 + chr9 129210344 129210548 chr9,129210344,129210581,+,L1MB3,LINE,L1,5919,6169,-2,129204426,129210583 +5 + chr9 129259300 129259332 chr9,129259300,129259332,+,(CCCCAT)n,Simple_repeat,Simple_repeat,1,30,0,129259300,129259332 +6 + chr9 129259332 129259829 chr9,129259332,129259829,-,MLT1D,LTR,ERVL-MaLR,0,505,2,129259332,129259830 -6 - chr9 129261389 129261568 chr9,129261389,129261568,+,L1MB3,LINE,L1,6005,6183,0,129255385,129261568 +6 + chr9 129285662 129285728 chr9,129285662,129285969,-,AluSq,SINE,Alu,-6,307,5,129285656,129285973 -5 - chr9 129321792 129321825 chr9,129321749,129321825,+,MIRc,SINE,MIR,138,214,-54,129321612,129321879 +2 + chr9 129321871 129322144 chr9,129321871,129322144,+,L2b,LINE,L2,2994,3322,-53,129318878,129322197 +6 + chr9 129322649 129322856 chr9,129322649,129322856,-,MIR,SINE,MIR,-29,233,22,129322620,129322877 -6 - chr9 129322960 129323125 chr9,129322960,129323125,+,LTR103b_Mam,LTR,ERV1?,371,546,-2,129322590,129323127 +6 + chr9 129323307 129323430 chr9,129323307,129323430,+,L2b,LINE,L2,3241,3366,-9,129320067,129323439 +6 + chr9 129323432 129323528 chr9,129323432,129323528,-,MIR3,SINE,MIR,-65,143,35,129323367,129323562 -6 - chr9 129323903 129324078 chr9,129323903,129324078,+,MIRc,SINE,MIR,1,185,-45,129323903,129324123 +6 + chr9 129324624 129324905 chr9,129324624,129324926,+,AluSp,SINE,Alu,2,307,-6,129324623,129324932 +5 + chr9 129333906 129334014 chr9,129333713,129334014,+,L2b,LINE,L2,2805,3159,-228,129330909,129334242 +1 + chr9 129338792 129338896 chr9,129338481,129338896,-,MER41C,LTR,ERV1,-117,404,1,129338364,129338896 -2 - chr9 129347226 129347340 chr9,129347183,129347340,-,AluSz,SINE,Alu,-183,129,1,129347000,129347340 -2 - chr9 129347351 129347464 chr9,129347351,129347558,-,L1ME4b,LINE,L1,-378,514,350,129346973,129347907 -5 - chr9 129355458 129355576 chr9,129355439,129355576,-,FRAM,SINE,Alu,-39,137,1,129355400,129355576 -2 - chr9 129359395 129359531 chr9,129359395,129359531,+,MIR,SINE,MIR,113,262,0,129359283,129359531 +6 + chr9 129431802 129431983 chr9,129431802,129431983,-,MIR,SINE,MIR,-77,185,1,129431725,129431983 +6 - chr9 129431996 129432010 chr9,129431996,129432038,+,(GGCTGG)n,Simple_repeat,Simple_repeat,1,42,0,129431996,129432038 -2 + chr9 129438407 129438521 chr9,129438407,129438521,+,MIRb,SINE,MIR,113,243,-19,129438295,129438540 +6 + chr9 129438543 129438657 chr9,129438543,129438657,-,AluYc,SINE,Alu,-6,293,180,129438537,129438836 -6 - chr9 129438879 129438906 chr9,129438879,129438906,+,(GTT)n,Simple_repeat,Simple_repeat,1,27,0,129438879,129438906 +6 + chr9 129438974 129439083 chr9,129438974,129439083,-,L1MA5,LINE,L1,-2,6298,6190,129438972,129445272 -6 - chr9 129446633 129446720 chr9,129446633,129446720,-,MLT1B,LTR,ERVL-MaLR,-303,87,1,129446330,129446720 +6 - chr9 129446795 129447167 chr9,129446795,129447167,-,MLT1H1,LTR,ERVL-MaLR,-235,356,2,129446560,129447168 +6 - chr9 129480605 129480658 chr9,129480578,129480658,-,L2b,LINE,L2,-35,3340,3260,129480543,129483917 +5 - chr9 129480962 129481095 chr9,129480962,129481095,+,MIR,SINE,MIR,15,161,-101,129480948,129481196 -6 + chr9 129481095 129481257 chr9,129481095,129481257,+,Arthur1A,DNA,hAT-Tip100,1,175,-2,129481095,129481259 -6 + chr9 129481257 129481323 chr9,129481257,129481323,+,MIR,SINE,MIR,162,226,-36,129481096,129481359 -6 + chr9 129481885 129482012 chr9,129481885,129482012,-,MIRb,SINE,MIR,-126,142,13,129481759,129482024 +6 - chr9 129482061 129482099 chr9,129482061,129482099,+,GA-rich,Low_complexity,Low_complexity,1,38,0,129482061,129482099 -6 + chr9 129483550 129483633 chr9,129483550,129483657,+,MIRb,SINE,MIR,152,260,-8,129483399,129483665 +4 + chr9 129488545 129488622 chr9,129488513,129488622,+,(CGCCC)n,Simple_repeat,Simple_repeat,1,111,0,129488513,129488622 +1 + chr9 129488846 129488932 chr9,129488846,129488932,+,MIR3,SINE,MIR,53,147,-121,129488794,129489053 +1 + chr9 129488969 129489031 chr9,129488969,129489031,-,MIR3,SINE,MIR,-66,142,81,129488903,129489111 -6 - chr9 129489152 129489265 chr9,129489152,129489265,+,MIRc,SINE,MIR,88,203,-65,129489065,129489330 +6 + chr9 129490875 129491026 chr9,129490875,129491026,+,MIRb,SINE,MIR,34,176,-92,129490842,129491118 +1 + chr9 129493066 129493146 chr9,129492844,129493146,+,AluSp,SINE,Alu,2,303,-10,129492843,129493156 +1 + chr9 129493146 129493217 chr9,129493146,129493217,-,MIR3,SINE,MIR,-89,119,55,129493057,129493271 -6 - chr9 129493238 129493460 chr9,129493238,129493460,+,MIR,SINE,MIR,34,261,-1,129493205,129493461 +6 + chr9 129493487 129493595 chr9,129493487,129493626,-,L2b,LINE,L2,-13,3413,3225,129493474,129496850 -1 - chr9 129495487 129495705 chr9,129495487,129495713,+,MIRb,SINE,MIR,4,244,-24,129495484,129495737 +4 + chr9 129497005 129497073 chr9,129497005,129497181,+,GA-rich,Low_complexity,Low_complexity,1,181,0,129497005,129497181 +4 + chr9 129501990 129502117 chr9,129501722,129502117,-,L2c,LINE,L2,-20,3367,2936,129501702,129505052 -1 - chr9 129502337 129502369 chr9,129502337,129502369,-,L2c,LINE,L2,-318,3069,3038,129502019,129505406 -6 - chr9 129502369 129502572 chr9,129502369,129502572,-,AluSx,SINE,Alu,-6,306,127,129502363,129502698 -6 - chr9 129502572 129502889 chr9,129502572,129502889,-,AluY,SINE,Alu,-1,310,1,129502571,129502889 -5 - chr9 129502889 129503023 chr9,129502889,129503023,-,AluSx,SINE,Alu,-186,126,1,129502703,129503023 -1 - chr9 129503323 129503478 chr9,129503303,129503478,-,FAM,SINE,Alu,-10,175,1,129503293,129503478 -5 - chr9 129504060 129504137 chr9,129504060,129504137,-,MER46C,DNA,TcMar-Tigger,-1,337,263,129504059,129504399 -6 - chr9 129504137 129504456 chr9,129504137,129504456,+,AluSx,SINE,Alu,1,312,0,129504137,129504456 +5 + chr9 129504456 129504497 chr9,129504456,129504497,-,MER46C,DNA,TcMar-Tigger,-76,262,220,129504380,129504716 -6 - chr9 129504549 129504628 chr9,129504549,129504628,+,MIRb,SINE,MIR,118,194,-74,129504432,129504702 +6 + chr9 129504655 129504995 chr9,129504655,129504995,+,L2a,LINE,L2,3018,3424,-2,129501638,129504997 +6 + chr9 129505374 129505557 chr9,129505374,129505557,-,MIRb,SINE,MIR,-21,247,58,129505353,129505614 -6 - chr9 129505811 129505852 chr9,129505811,129505852,+,MIRc,SINE,MIR,125,165,-103,129505687,129505955 +6 + chr9 129505874 129505930 chr9,129505874,129505930,+,L1MD,LINE,L1,5857,5908,-451,129500018,129506381 +6 + chr9 129505934 129506197 chr9,129505934,129506197,-,AluJb,SINE,Alu,-6,306,44,129505928,129506240 -6 - chr9 129506197 129506370 chr9,129506197,129506370,+,L1MD2,LINE,L1,6112,6304,-55,129500086,129506425 +6 + chr9 129506374 129506484 chr9,129506374,129506484,-,AluSq10,SINE,Alu,-180,133,1,129506194,129506484 -6 - chr9 129506492 129506794 chr9,129506492,129506794,-,AluYf1,SINE,Alu,0,311,2,129506492,129506795 -6 - chr9 129506855 129506906 chr9,129506855,129506906,+,MER66B,LTR,ERV1,295,345,-141,129506561,129507047 +6 + chr9 129507380 129507622 chr9,129507380,129507622,+,AluSz,SINE,Alu,10,251,-61,129507371,129507683 +6 + chr9 129507749 129507850 chr9,129507749,129507850,+,MIR3,SINE,MIR,79,181,-27,129507671,129507877 +6 + chr9 129508040 129508117 chr9,129508040,129508117,-,L2c,LINE,L2,-6,3381,3315,129508034,129511431 -6 - chr9 129508117 129508428 chr9,129508117,129508428,+,AluSx,SINE,Alu,1,312,0,129508117,129508428 +6 + chr9 129508428 129508521 chr9,129508428,129508521,-,L2c,LINE,L2,-73,3314,3195,129508355,129511715 -5 - chr9 129508521 129508829 chr9,129508521,129508829,+,AluY,SINE,Alu,1,308,-3,129508521,129508832 +6 + chr9 129508829 129508899 chr9,129508829,129508899,-,L2c,LINE,L2,-181,3194,3119,129508648,129512017 -6 - chr9 129509173 129509312 chr9,129509173,129509312,-,Charlie29a,DNA,hAT-Charlie,-51,668,523,129509122,129509834 -6 - chr9 129509495 129509663 chr9,129509495,129509663,+,L1ME3A,LINE,L1,5248,5412,-761,129504248,129510424 +6 + chr9 129509663 129509988 chr9,129509663,129509988,-,MLT1A0,LTR,ERVL-MaLR,0,365,49,129509663,129510036 -6 - chr9 129509988 129510288 chr9,129509988,129510288,-,AluSg,SINE,Alu,-10,300,1,129509978,129510288 -6 - chr9 129510288 129510344 chr9,129510288,129510344,-,MLT1A0,LTR,ERVL-MaLR,-317,48,1,129509971,129510344 -6 - chr9 129510344 129510614 chr9,129510344,129510614,+,L1ME3A,LINE,L1,5413,5683,-490,129504932,129511104 +6 + chr9 129510614 129510912 chr9,129510614,129510912,+,AluJb,SINE,Alu,2,307,-5,129510613,129510917 +6 + chr9 129510912 129511200 chr9,129510912,129511200,+,L1ME3A,LINE,L1,5684,6002,-171,129505229,129511371 +6 + chr9 129511787 129512100 chr9,129511787,129512100,-,AluSz,SINE,Alu,0,312,2,129511787,129512101 -6 - chr9 129512388 129512451 chr9,129512388,129512451,-,MIRb,SINE,MIR,-26,242,181,129512362,129512631 -6 - chr9 129512481 129512679 chr9,129512481,129512818,-,L1MEf,LINE,L1,-4018,2382,2028,129508463,129514845 -5 - chr9 129513419 129513686 chr9,129513296,129513811,-,L1MEf,LINE,L1,-4656,1759,1228,129508640,129515038 -5 - chr9 129575409 129575595 chr9,129575303,129575595,+,MLT1B,LTR,ERVL-MaLR,86,390,0,129575218,129575595 +1 + chr9 129580051 129580169 chr9,129579959,129580169,-,MIRb,SINE,MIR,-31,237,18,129579928,129580186 -2 - chr9 129580517 129580558 chr9,129580517,129580827,-,MLT1D,LTR,ERVL-MaLR,0,467,147,129580517,129580973 -4 - chr9 129582647 129582925 chr9,129582622,129582925,-,AluSx,SINE,Alu,-9,303,1,129582613,129582925 -2 - chr9 129582925 129583098 chr9,129582925,129583098,+,Charlie4a,DNA,hAT-Charlie,347,507,-1,129582579,129583099 +6 + chr9 129583886 129584069 chr9,129583886,129584069,+,MIRb,SINE,MIR,13,222,-46,129583874,129584115 +6 + chr9 129584076 129584109 chr9,129584076,129584109,+,(TAT)n,Simple_repeat,Simple_repeat,1,33,0,129584076,129584109 +6 + chr9 129584149 129584556 chr9,129584149,129584572,+,MLT1J,LTR,ERVL-MaLR,36,474,-38,129584114,129584610 +5 + chr9 129718573 129718635 chr9,129718560,129718711,+,MIRb,SINE,MIR,28,185,-83,129718533,129718794 -1 + chr9 130044713 130044950 chr9,130044654,130044950,+,AluSx1,SINE,Alu,2,298,-14,130044653,130044964 +1 + chr9 130044950 130044966 chr9,130044950,130044966,+,(TAA)n,Simple_repeat,Simple_repeat,3,17,0,130044948,130044966 +6 + chr9 130044985 130045010 chr9,130044985,130045010,+,(A)n,Simple_repeat,Simple_repeat,1,25,0,130044985,130045010 +6 + chr9 130140643 130140951 chr9,130140643,130140951,-,L1ME2,LINE,L1,-8,6156,5849,130140635,130146799 +6 - chr9 130141032 130141086 chr9,130141032,130141086,-,MIR3,SINE,MIR,-119,89,36,130140913,130141121 +6 - chr9 130141204 130141506 chr9,130141204,130141506,+,AluSx,SINE,Alu,1,300,-12,130141204,130141518 -6 + chr9 130141828 130141896 chr9,130141828,130141896,-,MER5A1,DNA,hAT-Charlie,-83,83,14,130141745,130141909 +6 - chr9 130144086 130144147 chr9,130144086,130144147,+,L2,LINE,L2,2047,2109,-1310,130142040,130145457 -6 + chr9 130944280 130944346 chr9,130944201,130944346,+,LTR85c,LTR,Gypsy?,17,181,-642,130944185,130944988 +2 + chr9 130945223 130945520 chr9,130945208,130945812,-,L1MEd,LINE,L1,-6259,827,152,130938949,130945963 -5 - chr9 131141678 131141766 chr9,131141478,131141778,-,AluJb,SINE,Alu,-7,305,1,131141471,131141778 +3 - chr9 131159003 131159032 chr9,131158817,131159032,-,AluSx1,SINE,Alu,-83,229,1,131158734,131159032 +5 - chr9 131159095 131159213 chr9,131159095,131159213,-,AluJr,SINE,Alu,-194,118,1,131158901,131159213 +6 - chr9 131163230 131163333 chr9,131163230,131163386,+,MIRb,SINE,MIR,34,193,-75,131163197,131163461 -5 + chr9 131164251 131164275 chr9,131164184,131164275,+,(GT)n,Simple_repeat,Simple_repeat,1,93,0,131164184,131164275 -5 + chr9 131164548 131164578 chr9,131164548,131164578,+,(TAAA)n,Simple_repeat,Simple_repeat,1,31,0,131164548,131164578 -6 + chr9 131164578 131164695 chr9,131164578,131164695,-,AluJb,SINE,Alu,-195,117,1,131164383,131164695 +6 - chr9 131165165 131165270 chr9,131165127,131165296,+,AluJo,SINE,Alu,122,302,-10,131165006,131165306 -3 + chr9 131167078 131167154 chr9,131166887,131167154,-,L1MC4,LINE,L1,-143,7899,7613,131166744,131174766 +4 - chr9 131167152 131167505 chr9,131167152,131167669,-,L1ME3B,LINE,L1,-233,6009,5455,131166919,131173123 +1 - chr9 131190805 131190990 chr9,131190805,131190990,-,L1ME3G,LINE,L1,-264,660,479,131190541,131191468 +6 - chr9 131191080 131191120 chr9,131191080,131191120,+,(TGTTTT)n,Simple_repeat,Simple_repeat,1,40,0,131191080,131191120 -6 + chr9 131191120 131191132 chr9,131191120,131191132,+,(GGTTT)n,Simple_repeat,Simple_repeat,2,53,0,131191119,131191132 -6 + chr9 131191181 131191487 chr9,131191181,131191487,+,AluSx,SINE,Alu,1,302,-10,131191181,131191497 -6 + chr9 131192169 131192195 chr9,131192169,131192195,+,(T)n,Simple_repeat,Simple_repeat,1,26,0,131192169,131192195 -6 + chr9 131192667 131192687 chr9,131192667,131192968,+,AluJr4,SINE,Alu,11,310,-2,131192657,131192970 -2 + chr9 131193900 131193950 chr9,131193665,131193950,-,AluSz6,SINE,Alu,-26,286,1,131193639,131193950 +4 - chr9 131499883 131499939 chr9,131499883,131499939,+,(TTGTTT)n,Simple_repeat,Simple_repeat,1,58,0,131499883,131499939 -6 + chr9 131819851 131820123 chr9,131819830,131820123,-,AluJr,SINE,Alu,-11,301,7,131819819,131820129 -2 - chr9 131820123 131820136 chr9,131820123,131820626,-,L1ME3A,LINE,L1,-1200,4946,4416,131818923,131825041 -4 - chr9 131820784 131820988 chr9,131820784,131821341,+,MER68,LTR,ERVL,1,563,0,131820784,131821341 +5 + chr9 132947189 132947246 chr9,132947189,132947362,+,MLT1K,LTR,ERVL-MaLR,2,197,-398,132947188,132947760 +4 + chr9 132951213 132951487 chr9,132951213,132951487,+,LTR16B,LTR,ERVL,1,288,-175,132951213,132951662 +6 + chr9 133250401 133250995 chr9,133250372,133250995,-,MER4B,LTR,ERV1,0,900,1,133250372,133250995 +5 - chr9 133251373 133251679 chr9,133251373,133251679,+,AluSx1,SINE,Alu,1,307,-5,133251373,133251684 -6 + chr9 133253001 133253130 chr9,133253001,133253130,-,L2a,LINE,L2,-39,3387,3238,133252962,133256367 +6 - chr9 133253252 133253497 chr9,133253252,133253497,+,L1MDa,LINE,L1,95,333,-6300,133253158,133259797 -6 + chr9 133253471 133254402 chr9,133253471,133254402,+,L1M2,LINE,L1,4131,4917,-1226,133249341,133255628 -6 + chr9 133254402 133254474 chr9,133254402,133254474,+,AluJr,SINE,Alu,1,72,-240,133254402,133254714 -6 + chr9 133254630 133254670 chr9,133254630,133254670,+,(TGTA)n,Simple_repeat,Simple_repeat,1,40,0,133254630,133254670 -6 + chr9 133254670 133254706 chr9,133254670,133254706,+,(TGTCTGTG)n,Simple_repeat,Simple_repeat,1,36,0,133254670,133254706 -6 + chr9 133254706 133254820 chr9,133254706,133254820,+,(TGTA)n,Simple_repeat,Simple_repeat,1,114,0,133254706,133254820 -6 + chr9 133254827 133254869 chr9,133254827,133254869,+,(TGTCTGTGTA)n,Simple_repeat,Simple_repeat,1,44,0,133254827,133254869 -6 + chr9 133611827 133611926 chr9,133611827,133611926,-,MIR,SINE,MIR,-76,186,74,133611751,133611999 +6 - chr9 133612890 133612953 chr9,133612890,133612953,+,L3,LINE,CR1,3941,4003,-96,133608950,133613049 -6 + chr9 133654736 133654795 chr9,133654736,133654795,-,MIR,SINE,MIR,-141,121,58,133654595,133654852 +6 - chr9 133656150 133656271 chr9,133656150,133656271,+,MIRb,SINE,MIR,52,175,-93,133656099,133656364 -6 + chr9 133656251 133656384 chr9,133656251,133656384,+,L2a,LINE,L2,3197,3333,-93,133653055,133656477 -6 + chr9 134027443 134027709 chr9,134027443,134027709,-,AluJb,SINE,Alu,-11,301,1,134027432,134027709 -6 - chr9 134028394 134028688 chr9,134028394,134028688,-,AluSx1,SINE,Alu,-16,296,1,134028378,134028688 -6 - chr9 134028800 134028881 chr9,134028800,134028881,-,L1ME4b,LINE,L1,-450,442,358,134028350,134029238 -6 - chr9 134029941 134030096 chr9,134029941,134030096,-,AluJo,SINE,Alu,-10,302,137,134029931,134030232 -6 - chr9 134030304 134030335 chr9,134030304,134030335,+,(T)n,Simple_repeat,Simple_repeat,1,31,0,134030304,134030335 +6 + chr9 134030707 134030740 chr9,134030707,134030740,+,A-rich,Low_complexity,Low_complexity,1,33,0,134030707,134030740 +6 + chr9 134057424 134057449 chr9,134057424,134057449,+,(AGGTG)n,Simple_repeat,Simple_repeat,1,25,0,134057424,134057449 +6 + chr9 134057536 134057603 chr9,134057536,134057603,-,MIRb,SINE,MIR,-79,189,122,134057457,134057724 -6 - chr9 134134226 134134302 chr9,134134226,134134302,-,AluSx,SINE,Alu,-236,76,1,134133990,134134302 +6 - chr9 134169103 134169340 chr9,134169103,134169435,-,MER44A,DNA,TcMar-Tigger,-1,338,1,134169102,134169435 -5 - chr9 134298463 134298695 chr9,134298380,134298695,-,AluSq2,SINE,Alu,0,313,1,134298380,134298695 -1 - chr9 134298695 134298848 chr9,134298695,134298848,+,L1MB7,LINE,L1,6021,6164,-20,134292675,134298868 +6 + chr9 134298872 134299385 chr9,134298872,134299385,+,MLT2B1,LTR,ERVL,1,520,0,134298872,134299385 +6 + chr9 134299515 134299603 chr9,134299515,134299603,-,MIR3,SINE,MIR,-3,205,109,134299512,134299711 -6 - chr9 134299771 134300293 chr9,134299771,134300293,-,MLT1F,LTR,ERVL-MaLR,0,548,1,134299771,134300293 -6 - chr9 134652793 134652843 chr9,134652793,134652969,-,MER5A,DNA,hAT-Charlie,0,189,3,134652793,134652971 +1 - chr9 134993565 134993705 chr9,134993565,134993705,+,MIRb,SINE,MIR,35,184,-84,134993531,134993789 +6 + chr9 134994827 134994883 chr9,134994827,134994883,+,(CCCT)n,Simple_repeat,Simple_repeat,1,57,0,134994827,134994883 +6 + chr9 134994885 134994972 chr9,134994885,134994972,-,L2b,LINE,L2,-11,3364,3276,134994874,134998247 -6 - chr9 134995378 134995467 chr9,134995378,134995467,+,MIRb,SINE,MIR,168,254,-14,134995211,134995481 +6 + chr9 135204722 135205027 chr9,135204451,135205027,-,MLT1E2,LTR,ERVL-MaLR,-1,626,13,135204450,135205039 +5 - chr9 135205092 135205194 chr9,135205092,135205255,+,ERVL-B4-int,LTR,ERVL,3743,3917,-1750,135201350,135207005 -2 + chr9 135245696 135245940 chr9,135245545,135245940,-,MLT1C,LTR,ERVL-MaLR,-16,451,19,135245529,135245958 +5 - chr9 135246042 135246184 chr9,135246042,135246184,-,MIR3,SINE,MIR,-42,166,14,135246000,135246197 +6 - chr9 135462730 135462985 chr9,135462730,135462985,-,L1MB8,LINE,L1,-5,6173,5918,135462725,135468902 +6 - chr9 135463044 135463078 chr9,135463044,135463078,+,A-rich,Low_complexity,Low_complexity,1,34,0,135463044,135463078 -6 + chr9 135463960 135464016 chr9,135463960,135464016,+,HAL1ME,LINE,L1,1649,1705,-760,135462312,135464776 -6 + chr9 135464020 135464531 chr9,135464020,135464531,+,LTR38,LTR,ERV1,1,556,0,135464020,135464531 -6 + chr9 135464592 135464837 chr9,135464592,135464837,+,AluSz,SINE,Alu,1,245,-67,135464592,135464904 -6 + chr9 135468088 135468133 chr9,135468003,135468133,-,HAL1M8,LINE,L1,-386,2605,2516,135467617,135470648 +4 - chr9 135468133 135468158 chr9,135468133,135468158,+,(TTTGTT)n,Simple_repeat,Simple_repeat,1,25,0,135468133,135468158 -6 + chr9 135468158 135468271 chr9,135468158,135468271,-,HAL1M8,LINE,L1,-476,2515,2404,135467682,135470674 +5 - chr9 135468284 135468306 chr9,135468284,135468306,+,(TTTG)n,Simple_repeat,Simple_repeat,1,23,0,135468284,135468306 -6 + chr9 135468601 135468709 chr9,135468601,135469313,+,LTR8,LTR,ERV1,1,691,0,135468601,135469313 -2 + chr9 135581623 135581680 chr9,135581506,135581843,+,MER1A,DNA,hAT-Charlie,182,518,-11,135581325,135581854 +3 + chr9 135585317 135585617 chr9,135585317,135585617,+,AluY,SINE,Alu,1,300,-11,135585317,135585628 +5 + chr9 135586264 135586428 chr9,135586264,135586428,+,MLT1D,LTR,ERVL-MaLR,269,433,-72,135585996,135586500 +6 + chr9 135586465 135586655 chr9,135586465,135586655,-,MLT1D,LTR,ERVL-MaLR,-17,488,275,135586448,135586929 -6 - chr9 135908652 135908685 chr9,135908555,135908685,-,L1M4,LINE,L1,-2598,3548,3430,135905957,135912114 -2 - chr9 135908716 135908788 chr9,135908716,135909121,-,L2a,LINE,L2,-259,3167,2734,135908457,135911854 -4 - chr9 136108996 136109081 chr9,136108996,136109115,+,(CCCCTC)n,Simple_repeat,Simple_repeat,1,123,0,136108996,136109115 -1 + chr9 136122548 136122652 chr9,136122548,136122652,+,L2b,LINE,L2,3038,3152,-223,136119511,136122875 +6 + chr9 136123004 136123042 chr9,136123004,136123042,+,(GTCCCC)n,Simple_repeat,Simple_repeat,1,39,0,136123004,136123042 +6 + chr9 136123579 136123610 chr9,136123579,136123610,+,G-rich,Low_complexity,Low_complexity,1,32,0,136123579,136123610 +6 + chr9 136124089 136124120 chr9,136124089,136124120,+,(GGGA)n,Simple_repeat,Simple_repeat,1,31,0,136124089,136124120 +6 + chr9 136124126 136124363 chr9,136124126,136124389,+,MLT1B,LTR,ERVL-MaLR,109,373,-17,136124018,136124406 +5 + chr9 136249971 136250010 chr9,136249957,136250010,+,MER134,DNA?,DNA?,14,66,-447,136249944,136250457 -5 + chr9 136322303 136322607 chr9,136322257,136322607,-,MLT1A0,LTR,ERVL-MaLR,-2,363,1,136322255,136322607 +5 - chr9 136322748 136322843 chr9,136322748,136322843,+,MLT1E2,LTR,ERVL-MaLR,43,150,-477,136322706,136323320 -6 + chr9 136322876 136322991 chr9,136322876,136322991,+,MLT1E2,LTR,ERVL-MaLR,341,461,-6,136322536,136322997 -6 + chr9 136323019 136323065 chr9,136323019,136323065,-,MIR,SINE,MIR,-11,251,206,136323008,136323270 +6 - chr9 136323271 136323361 chr9,136323271,136323361,-,Tigger19a,DNA,TcMar-Tigger,-80,243,157,136323191,136323517 +6 - chr9 136323438 136323492 chr9,136323438,136323492,+,(TG)n,Simple_repeat,Simple_repeat,1,54,0,136323438,136323492 -6 + chr9 136324075 136324122 chr9,136324075,136324122,+,(TG)n,Simple_repeat,Simple_repeat,1,47,0,136324075,136324122 -6 + chr9 136325513 136325690 chr9,136325513,136325690,-,MIRb,SINE,MIR,-30,238,41,136325483,136325730 +6 - chr9 136326757 136326780 chr9,136326757,136326780,+,(GAG)n,Simple_repeat,Simple_repeat,1,23,0,136326757,136326780 -6 + chr9 136549130 136549186 chr9,136549080,136549186,-,MIRc,SINE,MIR,-83,185,81,136548997,136549266 -1 - chr9 136721366 136721550 chr9,136721037,136721550,-,MER54B,LTR,ERVL,0,793,218,136721037,136721767 +5 - chr9 136725234 136725515 chr9,136725211,136725515,-,AluSx,SINE,Alu,-8,304,1,136725203,136725515 +5 - chr9 136725577 136725662 chr9,136725577,136725662,-,MER20,DNA,hAT-Charlie,-17,202,114,136725560,136725775 +6 - chr9 136804316 136804462 chr9,136804316,136804462,-,L2,LINE,L2,-1273,2146,1999,136803043,136806460 +6 - chr9 136807189 136807202 chr9,136807189,136807501,-,MER74B,LTR,ERVL,-10,612,273,136807179,136807773 +2 - chr9 136807852 136807905 chr9,136807852,136807905,+,(CG)n,Simple_repeat,Simple_repeat,1,57,0,136807852,136807905 +6 + chr9 136808476 136808508 chr9,136808476,136808508,+,(GGCCA)n,Simple_repeat,Simple_repeat,1,32,0,136808476,136808508 +6 + chr9 136809494 136809625 chr9,136809494,136809625,+,AluSx3,SINE,Alu,1,131,-180,136809494,136809805 +6 + chr9 136937181 136937282 chr9,136937181,136937282,-,AluJb,SINE,Alu,-3,309,205,136937178,136937486 +6 - chr9 136937320 136937452 chr9,136937320,136937452,-,L1ME3Cz,LINE,L1,-5413,1134,998,136931907,136938449 +6 - chr9 137052742 137052782 chr9,137052742,137052782,+,(CTTC)n,Simple_repeat,Simple_repeat,1,42,0,137052742,137052782 +6 + chr9 137057663 137057705 chr9,137057398,137057705,-,AluSx1,SINE,Alu,-3,309,1,137057395,137057705 -1 - chr9 137057707 137057766 chr9,137057707,137057766,-,Alu,SINE,Alu,-241,60,1,137057466,137057766 -6 - chr9 137062328 137062416 chr9,137062312,137062416,-,AluJr4,SINE,Alu,-179,133,2,137062133,137062417 -2 - chr9 137085369 137085676 chr9,137085363,137085676,-,AluSx1,SINE,Alu,-2,310,1,137085361,137085676 +5 - chr9 137085678 137085726 chr9,137085678,137085726,-,MER65D,LTR,ERV1,-135,338,286,137085543,137086011 +6 - chr9 137294333 137294568 chr9,137294333,137294568,+,MLT1J,LTR,ERVL-MaLR,42,306,-206,137294292,137294774 -6 + chr9 137295467 137295524 chr9,137295467,137295524,+,(AGTGCGG)n,Simple_repeat,Simple_repeat,1,59,0,137295467,137295524 -6 + chr9 137616086 137616199 chr9,137616086,137616392,+,AluSz,SINE,Alu,1,301,-11,137616086,137616403 -2 + chr9 137617388 137617411 chr9,137617112,137617411,-,AluY,SINE,Alu,-11,300,1,137617101,137617411 +4 - chr9 137617411 137617656 chr9,137617411,137617656,-,L2a,LINE,L2,-7,3419,3094,137617404,137620749 +6 - chr9 137617781 137617830 chr9,137617781,137617830,+,MamRTE1,LINE,RTE-BovB,2466,2521,-1291,137615316,137619121 -6 + chr9 137867956 137868237 chr9,137867956,137868258,+,AluJb,SINE,Alu,1,298,-14,137867956,137868272 -2 + chr9 137874064 137874214 chr9,137873869,137874394,+,L2,LINE,L2,1368,1948,-1471,137872502,137875865 -1 + chr9 137875650 137875680 chr9,137875650,137875936,-,LTR33,LTR,ERVL,-178,337,39,137875472,137875974 +2 - chr9 137890342 137890399 chr9,137890342,137890399,+,L3,LINE,CR1,3846,3905,-194,137886497,137890593 -6 + chr9 137892172 137892332 chr9,137892172,137892332,-,MLT1B,LTR,ERVL-MaLR,-3,387,223,137892169,137892554 +6 - chr9 138199942 138199994 chr9,138199942,138199994,+,(ATT)n,Simple_repeat,Simple_repeat,1,56,0,138199942,138199994 -6 + chr9 138203138 138203179 chr9,138203114,138203179,-,OldhAT1,DNA,hAT-Ac,-2546,302,243,138200568,138203421 +4 - chr9 138216205 138216341 chr9,138216205,138216663,+,LTR102_Mam,LTR,ERVL,339,851,0,138215867,138216663 +4 + chr9 138217086 138217122 chr9,138217086,138217122,+,(GCA)n,Simple_repeat,Simple_repeat,1,36,0,138217086,138217122 +6 + chr9 138220782 138220894 chr9,138220657,138220894,-,AluSc8,SINE,Alu,-81,230,1,138220576,138220894 -2 - chr9 138233782 138233826 chr9,138233782,138233910,-,L1MC4,LINE,L1,-196,7846,7716,138233586,138241625 -4 - chr9 138244794 138244821 chr9,138244785,138244821,-,L2c,LINE,L2,-84,3303,3268,138244701,138248088 -2 - chr9 138248216 138248431 chr9,138248137,138248565,-,MLT1D,LTR,ERVL-MaLR,-2,503,1,138248135,138248565 -3 - chr9 138252784 138252994 chr9,138252784,138253121,-,AluSq2,SINE,Alu,-8,305,1,138252776,138253121 -5 - chrX 321092 321248 chrX,321092,321279,+,AluJo,SINE,Alu,39,217,-95,321054,321374 +4 + chrX 321683 321851 chrX,321632,321925,+,AluJo,SINE,Alu,2,312,0,321631,321925 +5 + chrX 990221 990427 chrX,990175,990498,+,LTR9,LTR,ERV1,174,524,-120,990002,990618 +1 + chrX 1397025 1397154 chrX,1396812,1397154,-,AluSz,SINE,Alu,-8,304,1,1396804,1397154 -1 - chrX 1413081 1413131 chrX,1413081,1413344,+,AluSq2,SINE,Alu,2,265,-48,1413080,1413392 +5 + chrX 1413749 1413915 chrX,1413592,1413915,+,MLT1C,LTR,ERVL-MaLR,11,348,-119,1413582,1414034 +5 + chrX 1413926 1414028 chrX,1413926,1414302,+,MLT1C,LTR,ERVL-MaLR,5,404,-63,1413922,1414365 +5 + chrX 1732584 1732630 chrX,1732493,1732630,-,AluSx1,SINE,Alu,-179,133,1,1732314,1732630 -1 - chrX 1733950 1734065 chrX,1733752,1734065,-,AluSx1,SINE,Alu,-4,308,1,1733748,1734065 -2 - chrX 1768435 1768475 chrX,1768413,1768475,-,FRAM,SINE,Alu,-10,166,105,1768403,1768579 -2 - chrX 1768551 1768719 chrX,1768551,1768719,-,AluJb,SINE,Alu,-9,303,131,1768542,1768849 -6 - chrX 1768719 1768776 chrX,1768719,1769029,-,AluSc,SINE,Alu,0,309,1,1768719,1769029 -5 - chrX 2334295 2334452 chrX,2334170,2334452,-,AluSx1,SINE,Alu,-19,293,1,2334151,2334452 +5 - chrX 2334457 2334733 chrX,2334457,2334733,-,AluJo,SINE,Alu,-18,294,17,2334439,2334749 +6 - chrX 2334849 2334899 chrX,2334849,2334899,-,MER4A1,LTR,ERV1,0,472,428,2334849,2335326 +6 - chrX 2334899 2334919 chrX,2334899,2335205,+,AluSx1,SINE,Alu,3,303,-9,2334897,2335214 -2 + chrX 2613258 2613567 chrX,2613258,2613567,-,AluSz6,SINE,Alu,-2,310,1,2613256,2613567 +6 - chrX 2614851 2614893 chrX,2614851,2614893,+,(TCTC)n,Simple_repeat,Simple_repeat,1,42,0,2614851,2614893 -6 + chrX 2615262 2615306 chrX,2615262,2615306,+,(TTG)n,Simple_repeat,Simple_repeat,1,46,0,2615262,2615306 -6 + chrX 2852776 2852810 chrX,2852776,2852810,+,(TAATAT)n,Simple_repeat,Simple_repeat,1,34,0,2852776,2852810 -6 + chrX 2904904 2904931 chrX,2904899,2904931,+,(T)n,Simple_repeat,Simple_repeat,1,32,0,2904899,2904931 +1 + chrX 2905910 2906056 chrX,2905910,2906056,+,MLT1G1,LTR,ERVL-MaLR,207,358,-154,2905704,2906210 +6 + chrX 3284354 3284417 chrX,3284354,3284417,+,MIR,SINE,MIR,102,170,-92,3284253,3284509 +6 + chrX 3668157 3668192 chrX,3668157,3668195,+,(AAT)n,Simple_repeat,Simple_repeat,1,42,0,3668157,3668195 +5 + chrX 3818442 3818485 chrX,3817863,3818485,-,L1PB4,LINE,L1,-13,6143,5499,3817850,3823983 +4 - chrX 3821681 3821792 chrX,3821603,3821792,-,L1MA4,LINE,L1,-260,6040,5847,3821343,3827638 +5 - chrX 3821792 3822238 chrX,3821792,3822238,+,MER67D,LTR,ERV1,73,514,0,3821720,3822238 -6 + chrX 3824345 3824598 chrX,3824345,3824645,-,AluSc8,SINE,Alu,-17,294,1,3824328,3824645 +1 - chrX 3853014 3853336 chrX,3853014,3853336,-,AluJr,SINE,Alu,0,312,1,3853014,3853336 +6 - chrX 3853433 3853860 chrX,3853433,3853860,+,MLT1C,LTR,ERVL-MaLR,21,458,-9,3853413,3853869 -6 + chrX 3854133 3854177 chrX,3854133,3854177,+,(CTC)n,Simple_repeat,Simple_repeat,1,44,0,3854133,3854177 -6 + chrX 3854180 3854467 chrX,3854180,3854467,-,AluJr,SINE,Alu,-24,288,7,3854156,3854473 +5 - chrX 3864398 3864491 chrX,3864101,3864491,+,L1MB3,LINE,L1,3877,4272,-1868,3860225,3866359 -5 + chrX 3864491 3864826 chrX,3864491,3864826,+,AluSz6,SINE,Alu,1,303,-9,3864491,3864835 -6 + chrX 3864826 3864874 chrX,3864826,3864874,+,L1MB3,LINE,L1,4273,4301,-1839,3860554,3866713 -6 + chrX 3864874 3865142 chrX,3864874,3865162,+,AluSz,SINE,Alu,1,300,-12,3864874,3865174 -2 + chrX 3891438 3891760 chrX,3891438,3891760,-,AluJr,SINE,Alu,0,312,1,3891438,3891760 +5 - chrX 3891857 3892284 chrX,3891857,3892284,+,MLT1C,LTR,ERVL-MaLR,21,458,-9,3891837,3892293 -6 + chrX 3892557 3892601 chrX,3892557,3892601,+,(CTC)n,Simple_repeat,Simple_repeat,1,44,0,3892557,3892601 -6 + chrX 3892604 3892891 chrX,3892604,3892891,-,AluJr,SINE,Alu,-24,288,7,3892580,3892897 +6 - chrX 3905280 3905325 chrX,3905097,3905325,+,MSTA,LTR,ERVL-MaLR,202,427,-1,3904896,3905326 -4 + chrX 3929869 3930191 chrX,3929869,3930191,-,AluJr,SINE,Alu,0,312,1,3929869,3930191 +5 - chrX 3930288 3930715 chrX,3930288,3930715,+,MLT1C,LTR,ERVL-MaLR,21,458,-9,3930268,3930724 -6 + chrX 3930988 3931032 chrX,3930988,3931032,+,(CTC)n,Simple_repeat,Simple_repeat,1,44,0,3930988,3931032 -6 + chrX 3931035 3931322 chrX,3931035,3931322,-,AluJr,SINE,Alu,-24,288,7,3931011,3931328 +6 - chrX 4627200 4627211 chrX,4627063,4627211,+,L3,LINE,CR1,3948,4097,-2,4623116,4627213 -5 + chrX 4630222 4630350 chrX,4630102,4630373,+,AluJr,SINE,Alu,40,302,-10,4630063,4630383 -3 + chrX 4633508 4633572 chrX,4633431,4633785,-,THE1A,LTR,ERVL-MaLR,0,355,1,4633431,4633785 +1 - chrX 5653421 5653490 chrX,5653362,5653490,-,PrimLTR79,LTR,ERV1,-2,501,365,5653360,5653854 +5 - chrX 5669406 5669590 chrX,5669331,5669590,-,MLT1F,LTR,ERVL-MaLR,0,548,239,5669331,5669828 +4 - chrX 5671084 5671199 chrX,5670899,5671278,+,MLT1B,LTR,ERVL-MaLR,1,390,0,5670899,5671278 -3 + chrX 5725930 5726121 chrX,5725893,5726121,-,MLT1C,LTR,ERVL-MaLR,-42,425,192,5725851,5726312 +1 - chrX 5726136 5726183 chrX,5726136,5726183,-,MLT1C,LTR,ERVL-MaLR,-162,228,177,5725974,5726359 +6 - chrX 5726183 5726305 chrX,5726183,5726882,-,LTR8,LTR,ERV1,0,691,1,5726183,5726882 +1 - chrX 6667914 6667960 chrX,6667914,6667960,+,L3b,LINE,CR1,4992,5037,-195,6662923,6668155 -6 + chrX 6706343 6706466 chrX,6706333,6706472,+,AluJo,SINE,Alu,149,287,-25,6706185,6706497 -3 + chrX 7489659 7489749 chrX,7489472,7489749,-,AluY,SINE,Alu,0,311,35,7489472,7489783 -1 - chrX 7490390 7490648 chrX,7490390,7490648,+,L1MA8,LINE,L1,6008,6288,-3,7484383,7490651 +6 + chrX 8863861 8864052 chrX,8863778,8864052,-,LTR47A,LTR,ERVL,0,452,148,8863778,8864199 +5 - chrX 8864060 8864092 chrX,8864060,8864114,+,AluJo,SINE,Alu,247,301,-11,8863814,8864125 -2 + chrX 8866685 8866721 chrX,8866685,8866721,+,(CTTTC)n,Simple_repeat,Simple_repeat,1,37,0,8866685,8866721 -6 + chrX 8867511 8867598 chrX,8867429,8867598,-,MSTB1,LTR,ERVL-MaLR,0,432,222,8867429,8867819 +4 - chrX 9273556 9274215 chrX,9273555,9274215,+,GA-rich,Low_complexity,Low_complexity,1,675,0,9273555,9274215 +2 + chrX 9274675 9274949 chrX,9274675,9274949,+,AluSg4,SINE,Alu,2,278,-32,9274674,9274981 +6 + chrX 9274949 9274976 chrX,9274949,9274976,+,(AG)n,Simple_repeat,Simple_repeat,1,27,0,9274949,9274976 +6 + chrX 10025054 10025077 chrX,10025054,10025080,-,L1MB7,LINE,L1,-29,6155,6130,10025025,10031209 +2 - chrX 10038313 10038335 chrX,10038028,10038335,-,AluY,SINE,Alu,-3,308,2,10038025,10038336 +4 - chrX 10262698 10262941 chrX,10262688,10263021,+,MLT1I,LTR,ERVL-MaLR,71,407,-4,10262618,10263025 +3 + chrX 10287856 10287891 chrX,10287856,10288054,+,MIR,SINE,MIR,53,259,-3,10287804,10288057 +4 + chrX 10365266 10365323 chrX,10365069,10365442,+,THE1C,LTR,ERVL-MaLR,1,375,0,10365069,10365442 +5 + chrX 10848044 10848185 chrX,10848044,10848185,+,MIRb,SINE,MIR,86,238,-24,10847959,10848209 -6 + chrX 10963437 10963517 chrX,10963437,10963517,+,MIRb,SINE,MIR,2,86,-182,10963436,10963699 -6 + chrX 10963679 10963749 chrX,10963679,10963749,+,L2b,LINE,L2,3309,3375,0,10960371,10963749 -6 + chrX 11038539 11038655 chrX,11038520,11038883,-,MSTA,LTR,ERVL-MaLR,0,428,1,11038520,11038883 +5 - chrX 12374944 12374977 chrX,12374890,12374977,+,L2b,LINE,L2,3244,3334,-41,12371647,12375018 -4 + chrX 12902817 12902841 chrX,12902476,12902841,+,L1ME3G,LINE,L1,433,801,-123,12902044,12902964 -5 + chrX 12902951 12902988 chrX,12902951,12902988,+,(CATC)n,Simple_repeat,Simple_repeat,1,39,0,12902951,12902988 -6 + chrX 12903096 12903218 chrX,12903096,12903218,+,MIRb,SINE,MIR,16,161,-107,12903081,12903325 -6 + chrX 12908216 12908333 chrX,12908062,12908342,+,AluSz6,SINE,Alu,5,284,-28,12908058,12908370 -1 + chrX 13093757 13093803 chrX,13093757,13093803,+,(ACTCAG)n,Simple_repeat,Simple_repeat,1,47,0,13093757,13093803 +6 + chrX 13094088 13094573 chrX,13094088,13094664,-,L1ME3,LINE,L1,0,6162,5589,13094088,13100252 -5 - chrX 13287436 13287563 chrX,13287436,13287563,-,MER5A1,DNA,hAT-Charlie,-37,129,7,13287399,13287569 +6 - chrX 13303320 13303452 chrX,13303238,13303604,-,THE1B,LTR,ERVL-MaLR,-1,363,1,13303237,13303604 +1 - chrX 13315599 13315611 chrX,13315599,13315652,-,L2,LINE,L2,-696,2723,2671,13314903,13318322 -4 - chrX 13316562 13316577 chrX,13316540,13316577,+,(TT)n,Simple_repeat,Simple_repeat,1,37,0,13316540,13316577 +2 + chrX 13319030 13319069 chrX,13319030,13319069,+,(CTG)n,Simple_repeat,Simple_repeat,1,39,0,13319030,13319069 +6 + chrX 13337895 13337948 chrX,13337858,13337991,+,LTR67B,LTR,ERVL,15,165,-455,13337844,13338446 +3 + chrX 13340020 13340099 chrX,13340020,13340341,-,MER61A,LTR,ERV1,-7,334,1,13340013,13340341 -4 - chrX 13402791 13403019 chrX,13402791,13403092,+,MER33,DNA,hAT-Charlie,20,302,-22,13402772,13403114 +5 + chrX 13963823 13963904 chrX,13963823,13964748,-,L1MB8,LINE,L1,-52,6126,5221,13963771,13969968 -5 - chrX 13980224 13980478 chrX,13980224,13980520,+,AluSq2,SINE,Alu,2,297,-16,13980223,13980536 -2 + chrX 15621018 15621266 chrX,15621018,15621266,-,L2,LINE,L2,-1244,2175,1929,15619774,15623194 -6 - chrX 15621433 15621484 chrX,15621433,15621689,+,Tigger16a,DNA,TcMar-Tigger,657,917,-40,15620777,15621729 +5 + chrX 16159653 16159672 chrX,16159645,16159973,-,L1ME4b,LINE,L1,-2,890,587,16159643,16160559 +1 - chrX 17552349 17552524 chrX,17552286,17552549,-,MLT1J,LTR,ERVL-MaLR,0,512,238,17552286,17552786 +5 - chrX 17557199 17557299 chrX,17557199,17557299,+,LTR16C,LTR,ERVL,147,250,-239,17557053,17557538 -6 + chrX 17557326 17557348 chrX,17557326,17557348,+,(AT)n,Simple_repeat,Simple_repeat,1,22,0,17557326,17557348 -6 + chrX 17586063 17586175 chrX,17586063,17586175,+,MIR,SINE,MIR,34,150,-80,17586030,17586255 +6 + chrX 17970197 17970430 chrX,17970085,17970613,-,MLT1F,LTR,ERVL-MaLR,-2,546,4,17970083,17970616 +5 - chrX 17971987 17972131 chrX,17971854,17972131,+,MLT1J2,LTR,ERVL-MaLR,57,349,-99,17971798,17972230 -4 + chrX 18104551 18104644 chrX,18104292,18104924,+,L1PA2,LINE,L1,126,757,-5398,18104167,18110322 -1 + chrX 18688732 18688905 chrX,18688732,18689205,-,MER4B,LTR,ERV1,-136,474,1,18688596,18689205 +2 - chrX 18892744 18892760 chrX,18892743,18892760,+,(T)n,Simple_repeat,Simple_repeat,1,17,0,18892743,18892760 +1 + chrX 20140335 20140355 chrX,20140250,20140355,-,L2c,LINE,L2,-11,3376,3274,20140239,20143628 -2 - chrX 22162733 22162951 chrX,22162688,22162951,-,MLT1J,LTR,ERVL-MaLR,-7,505,233,22162681,22163183 +5 - chrX 22162951 22163160 chrX,22162951,22163160,+,MER20,DNA,hAT-Charlie,1,219,0,22162951,22163160 -6 + chrX 22163160 22163312 chrX,22163160,22163312,-,MLT1J,LTR,ERVL-MaLR,-280,232,100,22162880,22163411 +6 - chrX 22163312 22163339 chrX,22163312,22163339,+,(TTG)n,Simple_repeat,Simple_repeat,1,27,0,22163312,22163339 -6 + chrX 22163339 22163371 chrX,22163339,22163414,-,MLT1J,LTR,ERVL-MaLR,-413,99,20,22162926,22163433 +2 - chrX 22169794 22169855 chrX,22169707,22169979,+,MIRb,SINE,MIR,1,262,-6,22169707,22169985 -3 + chrX 22171159 22171190 chrX,22171076,22171432,-,THE1D,LTR,ERVL-MaLR,0,381,29,22171076,22171460 +3 - chrX 22172318 22172797 chrX,22172318,22172797,-,LTR33A,LTR,ERVL,-17,503,2,22172301,22172798 +6 - chrX 22620951 22621057 chrX,22620951,22621115,+,MIR,SINE,MIR,3,191,-71,22620949,22621186 -2 + chrX 22698457 22698564 chrX,22696509,22698602,-,L1MC5a,LINE,L1,-231,2546,324,22696278,22698925 -1 - chrX 22768693 22768703 chrX,22768565,22768703,-,MIR,SINE,MIR,-1,261,122,22768564,22768824 -2 - chrX 22944053 22944139 chrX,22944006,22944139,+,L1ME4a,LINE,L1,5963,6101,-23,22938044,22944162 -4 + chrX 23064038 23064121 chrX,23063970,23064130,+,HAL1,LINE,L1,495,671,-1836,23063476,23065966 -1 + chrX 23270051 23270083 chrX,23269718,23270083,-,L1MB7,LINE,L1,-88,6096,5726,23269630,23275808 +4 - chrX 23772992 23773132 chrX,23772820,23773132,-,AluSz,SINE,Alu,0,312,2,23772820,23773133 +5 - chrX 23782568 23782648 chrX,23782563,23782777,-,Charlie1,DNA,hAT-Charlie,-2535,246,1,23780028,23782777 +3 - chrX 24545754 24545941 chrX,24545754,24545941,-,L2a,LINE,L2,-27,3399,3204,24545727,24549144 -6 - chrX 24658040 24658237 chrX,24657984,24658316,-,MamGypsy2-I,LTR,Gypsy,-3042,1124,804,24654942,24659119 -5 - chrX 25880794 25880869 chrX,25880794,25881011,+,MIR,SINE,MIR,21,252,-10,25880774,25881021 +4 + chrX 25882108 25882256 chrX,25882108,25882256,+,L1ME3,LINE,L1,3342,3513,-2887,25878767,25885143 +6 + chrX 25882278 25882306 chrX,25882278,25885802,+,L1P2,LINE,L1,39,3507,-2639,25882240,25888441 +4 + chrX 25893364 25893544 chrX,25893164,25893607,+,LTR22A,LTR,ERVK,1,458,0,25893164,25893607 +5 + chrX 26559768 26559902 chrX,26559768,26559902,+,MIRb,SINE,MIR,17,157,-111,26559752,26560013 +6 + chrX 27042958 27043120 chrX,27042958,27044946,-,L1MCa,LINE,L1,-4656,2095,8,27038302,27044953 +2 - chrX 27128805 27128839 chrX,27128759,27128839,+,(TTC)n,Simple_repeat,Simple_repeat,1,85,0,27128759,27128839 -5 + chrX 27158905 27158968 chrX,27156821,27158968,+,LTR12C,LTR,ERV1,2,1579,0,27156820,27158968 -4 + chrX 27158968 27159096 chrX,27158968,27159163,+,MIRb,SINE,MIR,34,249,-19,27158935,27159182 -1 + chrX 27162423 27162576 chrX,27162423,27162625,+,MIRb,SINE,MIR,27,236,-32,27162397,27162657 -2 + chrX 27169867 27169949 chrX,27169802,27169966,+,MER5A,DNA,hAT-Charlie,17,183,-6,27169786,27169972 -3 + chrX 27174920 27175090 chrX,27174904,27175090,-,AluSx3,SINE,Alu,-17,294,110,27174887,27175199 +5 - chrX 27175094 27175476 chrX,27175094,27175476,+,MER77,LTR,ERVL,152,538,-66,27174943,27175542 -6 + chrX 27175476 27175638 chrX,27175476,27175638,-,FRAM,SINE,Alu,-15,161,1,27175461,27175638 +6 - chrX 27175638 27175718 chrX,27175638,27175718,+,MER77,LTR,ERVL,539,604,0,27175100,27175718 -6 + chrX 27186606 27186657 chrX,27186606,27186865,+,L1MEc,LINE,L1,1964,2192,-637,27184643,27187502 -2 + chrX 27265748 27265811 chrX,27265713,27265820,+,L1ME2z,LINE,L1,6338,6441,-3,27259376,27265823 -3 + chrX 27336410 27336493 chrX,27336389,27336594,+,L1M4a2,LINE,L1,1358,1517,-4725,27335032,27341319 -3 + chrX 27350215 27350270 chrX,27350215,27350270,+,(TA)n,Simple_repeat,Simple_repeat,1,55,0,27350215,27350270 -6 + chrX 27350428 27350823 chrX,27350428,27350902,-,MLT1D,LTR,ERVL-MaLR,-31,474,1,27350397,27350902 +2 - chrX 27393542 27393632 chrX,27393306,27393771,+,L1MEg,LINE,L1,2,452,-5632,27393305,27399403 -3 + chrX 27394980 27395029 chrX,27394911,27395198,+,L1M5,LINE,L1,5419,5706,-473,27389493,27395671 -3 + chrX 27398751 27398837 chrX,27398737,27399050,+,L1MEf,LINE,L1,1537,1850,-4565,27397201,27403615 -1 + chrX 27398937 27398997 chrX,27398737,27399050,+,L1MEf,LINE,L1,1537,1850,-4565,27397201,27403615 -1 + chrX 28571532 28572039 chrX,28571382,28572039,-,MER67B,LTR,ERV1,-2,659,1,28571380,28572039 +5 - chrX 28572040 28572081 chrX,28572040,28572551,+,L1MEh,LINE,L1,353,862,-1373,28571688,28573924 -2 + chrX 28576305 28576422 chrX,28576015,28576817,-,L1MD2,LINE,L1,-5759,788,25,28570256,28576841 +3 - chrX 28942113 28942145 chrX,28942113,28942256,+,L3,LINE,CR1,3919,4062,-37,28938195,28942293 +4 + chrX 28942200 28942256 chrX,28942113,28942256,+,L3,LINE,CR1,3919,4062,-37,28938195,28942293 +2 + chrX 28942282 28942394 chrX,28942282,28942394,+,(AT)n,Simple_repeat,Simple_repeat,1,119,0,28942282,28942394 +6 + chrX 30671861 30671894 chrX,30671861,30672184,+,AluSp,SINE,Alu,1,308,-5,30671861,30672189 +5 + chrX 30672030 30672166 chrX,30671861,30672184,+,AluSp,SINE,Alu,1,308,-5,30671861,30672189 +5 + chrX 30700038 30700184 chrX,30700038,30700209,-,MIR3,SINE,MIR,-17,191,14,30700021,30700222 +2 - chrX 30721582 30721603 chrX,30721296,30721603,-,AluY,SINE,Alu,-17,294,1,30721279,30721603 -2 - chrX 30723711 30723878 chrX,30723611,30723878,-,AluJb,SINE,Alu,0,312,1,30723611,30723878 +4 - chrX 30834623 30834763 chrX,30834610,30834929,-,AluJr,SINE,Alu,-2,310,3,30834608,30834931 -1 - chrX 30835197 30835251 chrX,30835127,30835251,-,Charlie20a,DNA,hAT-Charlie,-632,175,46,30834495,30835296 -2 - chrX 33742118 33742134 chrX,33740286,33742405,-,L1PBa,LINE,L1,-3892,2971,811,33736394,33743215 -1 - chrX 33942015 33942275 chrX,33941993,33942275,+,MLT1F1,LTR,ERVL-MaLR,201,517,-52,33941793,33942327 +5 + chrX 34206725 34206817 chrX,34206632,34206963,-,L1MEf,LINE,L1,-5695,441,127,34200937,34207089 +5 - chrX 34415190 34415537 chrX,34415190,34421162,+,L1PA3,LINE,L1,2125,8140,-10,34413066,34421172 -1 + chrX 36365626 36365802 chrX,36365478,36366078,-,L1PREC2,LINE,L1,-3,6157,5566,36365475,36371643 +5 - chrX 36367921 36367997 chrX,36367877,36367997,-,L1M4a2,LINE,L1,-2471,185,61,36365406,36368057 +4 - chrX 36368061 36368097 chrX,36368061,36368179,-,MER94,DNA,hAT-Blackjack,0,134,12,36368061,36368190 +2 - chrX 36413915 36413949 chrX,36413789,36414414,-,MSTA-int,LTR,ERVL-MaLR,-6,1625,994,36413783,36415407 +3 - chrX 36428986 36429042 chrX,36428665,36429221,-,L1ME2,LINE,L1,-275,5889,5277,36428390,36434497 +3 - chrX 36431030 36431045 chrX,36430746,36431045,-,L1MA9,LINE,L1,-7,6305,6008,36430739,36437052 +4 - chrX 36431046 36431470 chrX,36431046,36431584,-,HSMAR2,DNA,TcMar-Mariner,-763,539,5,36430283,36431588 +2 - chrX 37949267 37949395 chrX,37949116,37949395,+,MLT1L,LTR,ERVL-MaLR,223,487,-123,37948894,37949518 +2 + chrX 38221391 38221446 chrX,38221251,38221446,-,MIRb,SINE,MIR,-26,242,29,38221225,38221474 -1 - chrX 38223422 38223615 chrX,38223386,38223615,-,AluJo,SINE,Alu,0,312,108,38223386,38223722 -2 - chrX 38789088 38789194 chrX,38788896,38789270,+,MLT1A,LTR,ERVL-MaLR,1,374,0,38788896,38789270 +3 + chrX 38791883 38792028 chrX,38791698,38792032,-,L2a,LINE,L2,0,3426,3055,38791698,38795086 -3 - chrX 38799107 38799336 chrX,38799107,38799336,+,CR1-3_Croc,LINE,CR1,1940,2171,-1434,38797168,38800770 +6 + chrX 38799389 38799534 chrX,38799389,38799534,+,L3,LINE,CR1,3261,3405,-694,38796129,38800228 +6 + chrX 38799620 38799658 chrX,38799620,38799677,+,MIR3,SINE,MIR,16,73,-135,38799605,38799812 +5 + chrX 39304971 39305388 chrX,39304971,39305388,-,MLT1C,LTR,ERVL-MaLR,-2,465,3,39304969,39305390 +6 - chrX 39305697 39305987 chrX,39305697,39305987,-,LTR16C,LTR,ERVL,0,489,180,39305697,39306166 +6 - chrX 39306118 39306167 chrX,39306118,39306253,-,MIRb,SINE,MIR,-74,194,56,39306044,39306308 +2 - chrX 39321769 39321930 chrX,39321675,39322147,-,MLT1J1,LTR,ERVL-MaLR,0,444,15,39321675,39322161 +3 - chrX 39327223 39327234 chrX,39326608,39327234,-,MLT1L,LTR,ERVL-MaLR,0,610,18,39326608,39327251 +4 - chrX 39327248 39327340 chrX,39327248,39327340,-,MIRc,SINE,MIR,-120,148,44,39327128,39327383 +6 - chrX 39367285 39367297 chrX,39367039,39367297,-,MamRep434,DNA,TcMar-Tigger,-162,264,5,39366877,39367301 +5 - chrX 39367529 39367591 chrX,39367529,39367952,-,LTR16A,LTR,ERVL,-7,415,1,39367522,39367952 +2 - chrX 39376487 39376616 chrX,39376078,39376616,-,LTR16E1,LTR,ERVL,-3,535,1,39376075,39376616 +4 - chrX 39376862 39376951 chrX,39376743,39376951,-,MIR3,SINE,MIR,-4,204,2,39376739,39376952 +4 - chrX 39379051 39379226 chrX,39378979,39379356,-,MLT1H2,LTR,ERVL-MaLR,-4,485,70,39378975,39379425 +3 - chrX 39391614 39391774 chrX,39391476,39391860,-,LTR16C,LTR,ERVL,-102,387,2,39391374,39391861 +1 - chrX 39401259 39401298 chrX,39401259,39401298,+,(TC)n,Simple_repeat,Simple_repeat,1,41,0,39401259,39401298 -6 + chrX 39403601 39403654 chrX,39403381,39403654,-,LTR78B,LTR,ERV1,-609,687,426,39402772,39404079 +4 - chrX 39434755 39434824 chrX,39434677,39435032,-,THE1A,LTR,ERVL-MaLR,0,355,1,39434677,39435032 +1 - chrX 39837536 39837928 chrX,39837495,39837928,-,MLT1H2,LTR,ERVL-MaLR,-31,458,37,39837464,39837964 +5 - chrX 39838593 39838785 chrX,39838593,39838785,+,MIR,SINE,MIR,36,246,-16,39838558,39838801 -6 + chrX 40011764 40011888 chrX,40011764,40011888,+,MIRc,SINE,MIR,21,170,-98,40011744,40011986 +6 + chrX 40263153 40263552 chrX,40263153,40263681,-,MLT1N2,LTR,ERVL-MaLR,0,562,33,40263153,40263713 -4 - chrX 40285593 40286174 chrX,40285593,40286174,+,MLT1G1,LTR,ERVL-MaLR,1,579,0,40285593,40286174 +6 + chrX 40286334 40286354 chrX,40286334,40286354,+,(AG)n,Simple_repeat,Simple_repeat,1,20,0,40286334,40286354 +6 + chrX 40286607 40286932 chrX,40286607,40286932,-,AluJo,SINE,Alu,-1,311,2,40286606,40286933 -6 - chrX 40286936 40287052 chrX,40286936,40287052,-,L1ME1,LINE,L1,-15,6164,6058,40286921,40293109 -6 - chrX 40287052 40287354 chrX,40287052,40287354,-,AluSq2,SINE,Alu,-11,302,1,40287041,40287354 -6 - chrX 40287354 40287720 chrX,40287354,40287784,-,L1ME1,LINE,L1,-122,6057,5627,40287232,40293410 -5 - chrX 40735601 40735653 chrX,40735601,40735653,+,G-rich,Low_complexity,Low_complexity,1,53,0,40735601,40735653 +6 + chrX 41234011 41234060 chrX,41234011,41234060,+,(T)n,Simple_repeat,Simple_repeat,1,49,0,41234011,41234060 +6 + chrX 41276456 41276554 chrX,41276456,41276554,+,GA-rich,Low_complexity,Low_complexity,1,102,0,41276456,41276554 +6 + chrX 42252459 42252554 chrX,42252436,42254592,+,L1MB7,LINE,L1,3886,6173,-11,42248551,42254603 +1 + chrX 42254712 42254808 chrX,42254621,42254814,+,L1PB1,LINE,L1,6,200,-6663,42254616,42261477 +3 + chrX 42422465 42422587 chrX,42421529,42422893,+,L1PREC2,LINE,L1,4775,6135,-25,42416755,42422918 +3 + chrX 42422974 42423109 chrX,42422893,42423283,-,LTR47A,LTR,ERVL,-50,402,1,42422843,42423283 -3 - chrX 42456578 42456721 chrX,42456041,42456725,+,MER50B,LTR,ERV1,1,695,-2,42456041,42456727 +1 + chrX 43176994 43177173 chrX,43176750,43177173,+,MER61C,LTR,ERV1,1,428,0,43176750,43177173 +1 + chrX 43177173 43177205 chrX,43177173,43177317,+,MER61-int,LTR,ERV1,2,149,-5068,43177172,43182385 +4 + chrX 43190592 43190639 chrX,43190529,43190639,-,MLT1O,LTR,ERVL-MaLR,-285,257,152,43190244,43190790 -2 - chrX 43196197 43196230 chrX,43196087,43196230,+,MER34,LTR,ERV1,10,161,-410,43196078,43196640 +2 + chrX 43196230 43196369 chrX,43196230,43196681,+,MER34B,LTR,ERV1,1,533,-32,43196230,43196713 +4 + chrX 43197316 43197372 chrX,43197010,43197372,+,MER34,LTR,ERV1,159,542,0,43196852,43197372 +2 + chrX 43223316 43223393 chrX,43223138,43223393,+,LTR16A,LTR,ERVL,188,451,0,43222951,43223393 +2 + chrX 43225433 43225605 chrX,43225433,43225605,+,MER3,DNA,hAT-Charlie,39,209,0,43225395,43225605 +6 + chrX 43225605 43225631 chrX,43225605,43225631,-,MER3,DNA,hAT-Charlie,-156,53,24,43225449,43225654 -6 - chrX 43225712 43226226 chrX,43225712,43226226,+,LTR108e_Mam,LTR,ERVL,1,545,-3,43225712,43226229 +6 + chrX 43226234 43226598 chrX,43226234,43226651,+,MSTB,LTR,ERVL-MaLR,1,426,0,43226234,43226651 +5 + chrX 43953348 43953402 chrX,43953348,43953512,-,MER5A1,DNA,hAT-Charlie,0,166,2,43953348,43953513 -4 - chrX 43954516 43954548 chrX,43954444,43954572,+,L2a,LINE,L2,3293,3414,-12,43951152,43954584 +3 + chrX 45183251 45183429 chrX,45183185,45183430,+,L3,LINE,CR1,2383,2672,-1427,45180803,45184857 +1 + chrX 45270597 45270741 chrX,45270408,45270944,+,MLT1H1,LTR,ERVL-MaLR,1,555,0,45270408,45270944 +3 + chrX 45320458 45320591 chrX,45320177,45320749,-,L2c,LINE,L2,-173,3214,2562,45320004,45323310 -1 - chrX 45323289 45323369 chrX,45323289,45323369,+,Zaphod2,DNA,hAT-Tip100,3,83,-3441,45323287,45326810 +6 + chrX 45333274 45333531 chrX,45333235,45333531,-,AluSx,SINE,Alu,-2,310,1,45333233,45333531 -2 - chrX 45333531 45333917 chrX,45333531,45333976,+,BLACKJACK,DNA,hAT-Blackjack,2435,2969,0,45331097,45333976 +5 + chrX 45510571 45510595 chrX,45510571,45510760,-,MIRc,SINE,MIR,-36,232,8,45510535,45510767 -4 - chrX 45521608 45521981 chrX,45521528,45521981,-,MLT1F2,LTR,ERVL-MaLR,0,560,5,45521528,45521985 -2 - chrX 45522725 45522828 chrX,45522725,45522828,-,ERV3-16A3_LTR,LTR,ERVL,0,422,306,45522725,45523133 -6 - chrX 45522955 45523041 chrX,45522955,45523041,-,L3b,LINE,CR1,-7,4092,4037,45522948,45527077 -6 - chrX 45523274 45523325 chrX,45523274,45523325,+,MER20,DNA,hAT-Charlie,170,219,0,45523105,45523325 +6 + chrX 45523407 45523462 chrX,45523407,45523462,-,L2,LINE,L2,-1900,1519,1470,45521507,45524931 -6 - chrX 45523462 45523644 chrX,45523462,45523744,+,ORSL,DNA,hAT-Tip100,1,274,-1,45523462,45523745 +5 + chrX 45524756 45525185 chrX,45524756,45525185,+,LTR40b,LTR,ERVL,1,462,0,45524756,45525185 +6 + chrX 45525888 45526022 chrX,45525888,45526022,+,MIR,SINE,MIR,29,186,-76,45525860,45526098 +6 + chrX 45526024 45526062 chrX,45526024,45526062,+,tRNA-Leu-TTG,tRNA,tRNA,1,38,-48,45526024,45526110 +6 + chrX 45526064 45526137 chrX,45526064,45526137,+,MIRb,SINE,MIR,177,250,-18,45525888,45526155 +6 + chrX 45526286 45526584 chrX,45526286,45526584,-,AluSc,SINE,Alu,-12,297,1,45526274,45526584 -6 - chrX 45526771 45526956 chrX,45526771,45526956,+,AluSx1,SINE,Alu,1,185,-127,45526771,45527083 +6 + chrX 45526984 45527239 chrX,45526984,45527441,-,MLT1J,LTR,ERVL-MaLR,0,512,47,45526984,45527487 -5 - chrX 45629906 45629961 chrX,45629705,45629961,-,L1M5,LINE,L1,-2261,3885,3623,45627444,45633583 -2 - chrX 45629957 45629983 chrX,45629957,45630678,+,L1MCb,LINE,L1,2,1088,-5334,45629956,45636012 +5 + chrX 45630073 45630202 chrX,45629957,45630678,+,L1MCb,LINE,L1,2,1088,-5334,45629956,45636012 +5 + chrX 45765088 45765141 chrX,45765088,45765141,+,A-rich,Low_complexity,Low_complexity,1,53,0,45765088,45765141 -6 + chrX 45765271 45765299 chrX,45765271,45765371,-,L2a,LINE,L2,-142,3284,3181,45765129,45768551 +1 - chrX 45916990 45917040 chrX,45916834,45917353,-,L1ME3Cz,LINE,L1,-19,978,368,45916815,45917720 +1 - chrX 46547476 46547779 chrX,46547476,46547779,-,AluSq,SINE,Alu,-16,297,1,46547460,46547779 -6 - chrX 46547784 46548107 chrX,46547784,46548107,-,AluJr,SINE,Alu,-5,307,1,46547779,46548107 -5 - chrX 46899604 46899703 chrX,46899455,46899741,+,AluSz,SINE,Alu,1,311,-1,46899455,46899742 -1 + chrX 47204921 47205181 chrX,47204844,47205181,-,L2a,LINE,L2,-1,3425,3026,47204843,47208206 -1 - chrX 47205200 47205296 chrX,47205200,47205296,-,L2a,LINE,L2,-540,2879,2782,47204660,47208077 -6 - chrX 47205580 47205865 chrX,47205580,47205867,+,AluJb,SINE,Alu,1,296,-16,47205580,47205883 +5 + chrX 47297852 47298045 chrX,47297845,47298045,-,MER41C,LTR,ERV1,-288,233,43,47297557,47298087 -1 - chrX 47298045 47298090 chrX,47298045,47298338,-,AluJb,SINE,Alu,-18,294,5,47298027,47298342 -4 - chrX 47298484 47298721 chrX,47298434,47298732,-,AluSx,SINE,Alu,-15,297,1,47298419,47298732 -5 - chrX 47483883 47484082 chrX,47483883,47484082,-,L1M5,LINE,L1,-3308,2838,2627,47480575,47486708 -6 - chrX 47484151 47484181 chrX,47484151,47484181,+,(AG)n,Simple_repeat,Simple_repeat,1,31,0,47484151,47484181 +6 + chrX 47484374 47484583 chrX,47484374,47484583,-,L1ME3Cz,LINE,L1,-824,173,29,47483550,47484611 -6 - chrX 47484756 47484799 chrX,47484756,47484799,+,AluY,SINE,Alu,107,147,-164,47484650,47484963 +6 + chrX 47484812 47484823 chrX,47484812,47484995,+,AluSx1,SINE,Alu,121,304,-8,47484692,47485003 +5 + chrX 47660105 47660127 chrX,47660105,47660127,+,(CCTT)n,Simple_repeat,Simple_repeat,1,22,0,47660105,47660127 +5 + chrX 47660134 47660169 chrX,47660134,47660169,+,(TC)n,Simple_repeat,Simple_repeat,1,35,0,47660134,47660169 +6 + chrX 47660169 47660377 chrX,47660169,47660471,-,AluJb,SINE,Alu,-9,303,1,47660160,47660471 -5 - chrX 48056310 48056342 chrX,48055996,48056342,-,MLT1A0,LTR,ERVL-MaLR,0,365,16,48055996,48056357 -1 - chrX 48056420 48056432 chrX,48056420,48056530,+,L1MEd,LINE,L1,286,402,-6684,48056135,48063214 +4 + chrX 48066542 48066583 chrX,48066542,48066680,+,L4_C_Mam,LINE,RTE-X,4780,4918,-220,48061763,48066900 +5 + chrX 48334260 48334431 chrX,48334137,48334431,+,AluSc8,SINE,Alu,5,298,-13,48334133,48334444 -4 + chrX 48506523 48506550 chrX,48506485,48506550,-,L1MC4a,LINE,L1,-650,5474,5408,48505835,48511957 +5 - chrX 48506597 48506652 chrX,48506597,48506652,-,L2c,LINE,L2,-13,3374,3320,48506584,48509971 +6 - chrX 48506659 48506872 chrX,48506659,48506872,-,L1M5,LINE,L1,-662,5461,5260,48505997,48512131 +6 - chrX 48568014 48568180 chrX,48567903,48568206,+,AluSg,SINE,Alu,1,303,-7,48567903,48568213 -5 + chrX 48580955 48581073 chrX,48580955,48581073,+,MER46C,DNA,TcMar-Tigger,86,229,-109,48580870,48581182 +6 + chrX 48580975 48581073 chrX,48580955,48581073,+,MER46C,DNA,TcMar-Tigger,86,229,-109,48580870,48581182 -4 + chrX 48699146 48699162 chrX,48699146,48699220,-,MIRb,SINE,MIR,-67,201,126,48699079,48699345 +2 - chrX 48940351 48940492 chrX,48940351,48940492,+,MIR3,SINE,MIR,54,197,-11,48940298,48940503 +6 + chrX 49202172 49202293 chrX,49202044,49202293,-,MIR,SINE,MIR,-3,259,7,49202041,49202299 -2 - chrX 49202379 49202421 chrX,49202379,49202421,+,L1ME4b,LINE,L1,806,847,-45,49201574,49202466 +6 + chrX 49273054 49273221 chrX,49273050,49273221,-,L1ME3,LINE,L1,-3,6161,5986,49273047,49279206 -1 - chrX 49273918 49274042 chrX,49273918,49274042,-,L2b,LINE,L2,-4,3422,3263,49273914,49277304 -6 - chrX 49274061 49274233 chrX,49274061,49274233,-,MIRb,SINE,MIR,-21,247,70,49274040,49274302 -6 - chrX 49274261 49274571 chrX,49274261,49274571,+,L2b,LINE,L2,2844,3160,-215,49271418,49274786 +6 + chrX 49274695 49275466 chrX,49274695,49275466,+,L2,LINE,L2,1360,2304,-1115,49273336,49276581 +6 + chrX 49275508 49275768 chrX,49275508,49275773,+,L2b,LINE,L2,3135,3375,0,49272374,49275773 +5 + chrX 49876724 49876880 chrX,49875950,49876880,+,Charlie2b,DNA,hAT-Charlie,1796,2755,-27,49874155,49876907 -5 + chrX 49877109 49877352 chrX,49877109,49877352,-,MamTip1,DNA,hAT-Tip100,-30,237,1,49877079,49877352 +6 - chrX 49877381 49877449 chrX,49877381,49877449,+,L2b,LINE,L2,3302,3372,-3,49874080,49877452 -6 + chrX 49877671 49877691 chrX,49877671,49877691,+,(AGC)n,Simple_repeat,Simple_repeat,1,20,0,49877671,49877691 -6 + chrX 49879091 49879241 chrX,49879073,49879252,-,MER5B,DNA,hAT-Charlie,-2,176,1,49879071,49879252 +1 - chrX 51171328 51171400 chrX,51170911,51171435,+,L1PA7,LINE,L1,5618,6142,-12,51165294,51171447 -1 + chrX 51398116 51398173 chrX,51398015,51398173,+,L1M5,LINE,L1,3761,3936,-2210,51394255,51400383 +2 + chrX 51398237 51398512 chrX,51398237,51398512,-,MER46C,DNA,TcMar-Tigger,-4,334,1,51398233,51398512 -6 - chrX 51465573 51465661 chrX,51465573,51465772,-,L1M4a2,LINE,L1,-2438,218,1,51463135,51465772 -5 - chrX 51510948 51511005 chrX,51510925,51511222,+,AluSq2,SINE,Alu,1,297,-16,51510925,51511238 -1 + chrX 52050876 52050961 chrX,52050876,52050961,-,AluJr,SINE,Alu,-180,132,37,52050696,52050997 +6 - chrX 52050965 52051214 chrX,52050965,52051214,-,AluJr,SINE,Alu,-63,249,7,52050902,52051220 +6 - chrX 52054595 52054670 chrX,52054591,52054711,+,HAL1,LINE,L1,95,216,-2291,52054497,52057002 +3 + chrX 52054900 52055012 chrX,52054900,52055225,+,HAL1,LINE,L1,199,515,-1992,52054702,52057217 +5 + chrX 52055556 52055588 chrX,52055421,52055588,-,L1M5,LINE,L1,-3197,2949,2783,52052224,52058370 -2 - chrX 52202880 52203129 chrX,52202880,52203129,+,AluJr,SINE,Alu,7,249,-63,52202874,52203192 +6 + chrX 52203133 52203218 chrX,52203133,52203218,+,AluJr,SINE,Alu,37,132,-180,52203097,52203398 +6 + chrX 53094242 53094272 chrX,53094242,53094272,+,(GCG)n,Simple_repeat,Simple_repeat,1,30,0,53094242,53094272 +6 + chrX 53094668 53094846 chrX,53094668,53094846,+,MIRb,SINE,MIR,63,265,-3,53094606,53094849 -6 + chrX 53099472 53099608 chrX,53099383,53100198,-,Tigger1,DNA,TcMar-Tigger,-633,1785,967,53098750,53101164 -3 - chrX 53123469 53123775 chrX,53123043,53124054,-,Charlie17b,DNA,hAT-Charlie,-187,1017,1,53122856,53124054 -5 - chrX 53142316 53142613 chrX,53142316,53142613,-,AluSg,SINE,Alu,-13,297,1,53142303,53142613 -6 - chrX 53166921 53167014 chrX,53165640,53168219,+,HUERS-P3b-int,LTR,ERV1,5105,7405,-13,53160536,53168232 +5 + chrX 53169097 53169204 chrX,53169000,53169204,+,Charlie17,DNA,hAT-Charlie,838,1062,-1854,53168163,53171058 +1 + chrX 53169281 53169542 chrX,53169281,53169542,-,L1MC4,LINE,L1,-132,7910,7640,53169149,53177181 -6 - chrX 53169562 53170087 chrX,53169562,53170087,+,Charlie17,DNA,hAT-Charlie,1622,2160,-756,53167941,53170843 +6 + chrX 53170102 53170130 chrX,53170102,53170130,+,A-rich,Low_complexity,Low_complexity,1,28,0,53170102,53170130 +6 + chrX 53170196 53170535 chrX,53170196,53170535,-,MLT1A0,LTR,ERVL-MaLR,-18,347,12,53170178,53170546 -6 - chrX 53170641 53170914 chrX,53170641,53170981,+,Charlie17,DNA,hAT-Charlie,2459,2815,-101,53168183,53171082 +5 + chrX 53212408 53212602 chrX,53212303,53212602,-,AluSg,SINE,Alu,-10,300,1,53212293,53212602 +5 - chrX 53212717 53212739 chrX,53212717,53213024,+,AluSx1,SINE,Alu,1,306,-6,53212717,53213030 -2 + chrX 53214268 53214297 chrX,53214268,53214297,+,(A)n,Simple_repeat,Simple_repeat,1,29,0,53214268,53214297 -6 + chrX 53432722 53432838 chrX,53432567,53432856,+,AluSz,SINE,Alu,1,293,-19,53432567,53432875 -5 + chrX 53433006 53433032 chrX,53433006,53433315,+,AluSx1,SINE,Alu,1,303,-9,53433006,53433324 -1 + chrX 56014845 56015155 chrX,56013888,56015155,+,L1PA11,LINE,L1,6890,8152,-17,56006999,56015172 +2 + chrX 56015159 56015173 chrX,56015159,56015235,-,Charlie4a,DNA,hAT-Charlie,-421,87,7,56014738,56015241 -5 - chrX 56623906 56623940 chrX,56623906,56623940,+,U2,snRNA,snRNA,3,36,-152,56623904,56624092 +6 + chrX 56623986 56624458 chrX,56623986,56626015,+,L1PA8A,LINE,L1,4046,6110,-21,56619941,56626036 +5 + chrX 56817320 56817511 chrX,56817153,56817511,+,MamRep605,LTR?,LTR?,450,813,-36,56816704,56817547 +5 + chrX 56817691 56817729 chrX,56817691,56817729,+,(ATTT)n,Simple_repeat,Simple_repeat,1,38,0,56817691,56817729 +6 + chrX 56973510 56973657 chrX,56970531,56973657,+,L1PA4,LINE,L1,3028,6152,-3,56967504,56973660 +1 + chrX 56973798 56973834 chrX,56973798,56973834,+,A-rich,Low_complexity,Low_complexity,1,38,0,56973798,56973834 +6 + chrX 56974565 56974796 chrX,56974161,56974888,+,LTR8,LTR,ERV1,1,671,-20,56974161,56974908 +5 + chrX 57121833 57121886 chrX,57121833,57121886,+,(CCGCCC)n,Simple_repeat,Simple_repeat,1,54,0,57121833,57121886 +6 + chrX 57126885 57127133 chrX,57126703,57127133,+,MLT1L,LTR,ERVL-MaLR,144,605,-5,57126560,57127138 +2 + chrX 63343227 63343289 chrX,63343008,63343525,+,L1M4c,LINE,L1,8,572,-6035,63343001,63349560 -5 + chrX 63345489 63345571 chrX,63345299,63345594,+,AluJb,SINE,Alu,1,298,-14,63345299,63345608 -5 + chrX 63351842 63352102 chrX,63351829,63352102,-,L1ME4a,LINE,L1,0,6124,5801,63351829,63357902 -2 - chrX 63399404 63399564 chrX,63397947,63399564,-,MER57-int,LTR,ERV1,-1487,6050,4403,63396460,63403966 +5 - chrX 63399539 63399903 chrX,63399539,63399904,-,MER57-int,LTR,ERV1,-5819,368,1,63393720,63399904 +2 - chrX 63426559 63426678 chrX,63426552,63426678,-,LTR46,LTR,ERV1,-54,406,276,63426498,63426953 +5 - chrX 63426768 63426868 chrX,63426768,63426868,-,LTR46,LTR,ERV1,-357,103,1,63426411,63426868 +6 - chrX 63426868 63428052 chrX,63426868,63428052,-,LTR46-int,LTR,ERV1,0,6985,5220,63426868,63433271 +6 - chrX 63428375 63431612 chrX,63428375,63433922,-,LTR46-int,LTR,ERV1,-937,6048,670,63427438,63434591 +1 - chrX 63432364 63432491 chrX,63428375,63433922,-,LTR46-int,LTR,ERV1,-937,6048,670,63427438,63434591 +1 - chrX 63509942 63510079 chrX,63508503,63511575,+,ERV24B_Prim-int,LTR,ERV1,2790,5926,-1687,63505714,63513262 -5 + chrX 65999751 65999781 chrX,65999660,65999781,-,MIR3,SINE,MIR,-42,188,73,65999618,65999853 -1 - chrX 66000429 66000543 chrX,66000429,66000543,+,GA-rich,Low_complexity,Low_complexity,1,119,0,66000429,66000543 +6 + chrX 66017169 66017189 chrX,66017169,66017345,-,MIRc,SINE,MIR,-76,192,8,66017093,66017352 -4 - chrX 66019368 66019772 chrX,66019368,66019772,+,L2b,LINE,L2,2996,3385,-2,66016373,66019774 +6 + chrX 66019954 66020169 chrX,66019954,66020169,+,MER103C,DNA,hAT-Charlie,80,293,-4,66019875,66020173 +6 + chrX 66020392 66020422 chrX,66020392,66020538,+,MIR3,SINE,MIR,11,176,-32,66020382,66020570 +5 + chrX 68013470 68013505 chrX,68013396,68013505,+,L1ME3A,LINE,L1,5071,5185,-961,68008326,68014466 -5 + chrX 68013508 68013578 chrX,68013508,68013578,+,L1MA4A,LINE,L1,6219,6288,-15,68007290,68013593 -6 + chrX 68013717 68014620 chrX,68013717,68014620,+,L1ME3A,LINE,L1,5219,6161,-12,68008499,68014632 -6 + chrX 69179557 69179645 chrX,69179485,69179669,+,L2c,LINE,L2,3184,3386,-1,69176302,69179670 +1 + chrX 69201491 69201632 chrX,69201491,69201691,-,L2a,LINE,L2,-1,3425,3195,69201490,69204885 -4 - chrX 69204891 69205027 chrX,69204879,69205161,-,AluJb,SINE,Alu,-26,286,1,69204853,69205161 -3 - chrX 69208252 69208530 chrX,69208226,69208530,-,AluSx,SINE,Alu,-8,304,1,69208218,69208530 -2 - chrX 69208530 69208669 chrX,69208530,69208669,-,L3,LINE,CR1,-193,3906,3772,69208337,69212440 -6 - chrX 69208685 69208745 chrX,69208685,69208745,-,Plat_L3,LINE,CR1,-343,3243,3179,69208342,69211923 -6 - chrX 69208778 69209188 chrX,69208778,69209188,-,L3,LINE,CR1,-439,3660,3206,69208339,69212393 -6 - chrX 69209530 69209924 chrX,69209530,69209963,+,MLT1D,LTR,ERVL-MaLR,1,498,-7,69209530,69209970 +5 + chrX 69569669 69569727 chrX,69569576,69569727,-,MLT1J2,LTR,ERVL-MaLR,-17,431,279,69569559,69570005 +5 - chrX 69569834 69569944 chrX,69569834,69569944,-,MLT1J2,LTR,ERVL-MaLR,-338,110,1,69569496,69569944 +6 - chrX 69569963 69570016 chrX,69569963,69570051,-,L2c,LINE,L2,-219,3168,3086,69569744,69573136 +2 - chrX 69570251 69570357 chrX,69570170,69570465,+,L2b,LINE,L2,3070,3375,0,69567101,69570465 -1 + chrX 70148950 70148968 chrX,70148950,70149245,+,AluSp,SINE,Alu,5,300,-13,70148946,70149258 -2 + chrX 70149529 70149654 chrX,70149371,70149670,+,AluSx1,SINE,Alu,1,299,-13,70149371,70149683 -1 + chrX 70163842 70163917 chrX,70163385,70163917,+,L1MC5,LINE,L1,2535,2986,-5,70160851,70163922 -5 + chrX 70163956 70164128 chrX,70163956,70164255,+,AluSx1,SINE,Alu,1,301,-11,70163956,70164266 -2 + chrX 70164952 70165069 chrX,70164812,70165069,+,AluJo,SINE,Alu,6,291,-21,70164807,70165090 -4 + chrX 71183753 71184017 chrX,71183753,71184045,+,AluSz,SINE,Alu,1,307,-5,71183753,71184050 -2 + chrX 71197917 71198033 chrX,71197917,71198033,+,L2c,LINE,L2,2007,2128,-1291,71195911,71199324 -6 + chrX 71198068 71198175 chrX,71198068,71198187,-,MIR3,SINE,MIR,-12,196,76,71198056,71198262 +1 - chrX 72697159 72697198 chrX,72696803,72697329,+,MER4-int,LTR,ERV1,1,579,-6019,72696803,72703348 +3 + chrX 72711957 72711989 chrX,72711931,72711989,-,MIRc,SINE,MIR,-106,162,100,72711825,72712088 -2 - chrX 72712119 72712226 chrX,72712119,72712226,+,MamRTE1,LINE,RTE-BovB,321,447,-3365,72711799,72715591 +6 + chrX 72712277 72712348 chrX,72712277,72712395,+,MamRTE1,LINE,RTE-BovB,3637,3765,-47,72708641,72712442 +5 + chrX 72778213 72778362 chrX,72778213,72778362,+,(AGTGCC)n,Simple_repeat,Simple_repeat,1,150,0,72778213,72778362 +6 + chrX 72998771 72998807 chrX,72998771,72998807,+,(TCCTTCT)n,Simple_repeat,Simple_repeat,1,40,0,72998771,72998807 -6 + chrX 73002671 73002718 chrX,73002671,73002718,+,(CTCCCG)n,Simple_repeat,Simple_repeat,1,48,0,73002671,73002718 -6 + chrX 73002738 73002834 chrX,73002738,73002834,+,(CCCGCAGC)n,Simple_repeat,Simple_repeat,1,96,0,73002738,73002834 -6 + chrX 73080188 73080284 chrX,73080188,73080284,+,(GCTGCGGG)n,Simple_repeat,Simple_repeat,1,96,0,73080188,73080284 +6 + chrX 73080304 73080351 chrX,73080304,73080351,+,(GGGAGC)n,Simple_repeat,Simple_repeat,1,48,0,73080304,73080351 +6 + chrX 73084206 73084249 chrX,73084206,73084249,+,GA-rich,Low_complexity,Low_complexity,1,45,0,73084206,73084249 +6 + chrX 73792205 73792222 chrX,73791965,73792222,-,MER58B,DNA,hAT-Charlie,-1,340,80,73791964,73792301 -1 - chrX 73792222 73792520 chrX,73792222,73792520,+,AluSg,SINE,Alu,2,300,-10,73792221,73792530 +6 + chrX 73792520 73792606 chrX,73792520,73792606,-,MER58B,DNA,hAT-Charlie,-262,79,2,73792258,73792607 -6 - chrX 73792679 73793007 chrX,73792679,73793007,-,AluY,SINE,Alu,0,311,2,73792679,73793008 -6 - chrX 73793007 73793311 chrX,73793007,73793311,+,L2a,LINE,L2,3094,3422,-4,73789914,73793315 +6 + chrX 73793942 73794249 chrX,73793942,73794249,+,AluSg,SINE,Alu,2,310,0,73793941,73794249 +6 + chrX 73794255 73794334 chrX,73794255,73794334,+,(AAGGG)n,Simple_repeat,Simple_repeat,1,82,0,73794255,73794334 +6 + chrX 73794678 73794762 chrX,73794678,73794762,+,(TA)n,Simple_repeat,Simple_repeat,1,88,0,73794678,73794762 +6 + chrX 73795104 73795568 chrX,73795104,73795568,+,MLT1D,LTR,ERVL-MaLR,3,497,-8,73795102,73795576 +6 + chrX 73795577 73795880 chrX,73795577,73795880,+,AluJb,SINE,Alu,1,304,-8,73795577,73795888 +6 + chrX 73796045 73796430 chrX,73796045,73796430,-,MLT1B,LTR,ERVL-MaLR,-2,388,1,73796043,73796430 -6 - chrX 73796772 73796829 chrX,73796772,73796829,-,MIR3,SINE,MIR,-9,199,144,73796763,73796972 -6 - chrX 73797097 73797396 chrX,73797097,73797396,-,L2,LINE,L2,-1231,2188,1884,73795866,73799279 -6 - chrX 73797410 73797711 chrX,73797410,73797711,+,AluSq10,SINE,Alu,1,294,-19,73797410,73797730 +6 + chrX 73797876 73798039 chrX,73797876,73798039,-,L2c,LINE,L2,0,3387,3236,73797876,73801274 -6 - chrX 73798264 73798304 chrX,73798264,73798304,+,(GTTCTTT)n,Simple_repeat,Simple_repeat,1,40,0,73798264,73798304 +6 + chrX 73798583 73798867 chrX,73798583,73798867,-,AluJr4,SINE,Alu,-17,295,22,73798566,73798888 -6 - chrX 73798890 73799338 chrX,73798890,73799338,-,MER41-int,LTR,ERV1,-2719,3227,2774,73796171,73802111 -6 - chrX 73799338 73799626 chrX,73799338,73799626,+,AluSx1,SINE,Alu,1,288,-24,73799338,73799650 +6 + chrX 73799626 73800046 chrX,73799626,73800046,-,MER41-int,LTR,ERV1,-4224,3592,3478,73795402,73803523 -6 - chrX 73800034 73800741 chrX,73800034,73800741,-,MER41-int,LTR,ERV1,-5322,624,1,73794712,73800741 -6 - chrX 73800828 73801155 chrX,73800828,73801155,-,MER41A,LTR,ERV1,0,554,229,73800828,73801383 -6 - chrX 73801457 73801820 chrX,73801457,73801820,-,LTR7,LTR,ERV1,0,450,1,73801457,73801820 -6 - chrX 73801820 73802377 chrX,73801820,73802377,-,HERVH-int,LTR,ERV1,0,7713,7157,73801820,73809533 -6 - chrX 73802370 73804628 chrX,73802370,73804628,-,HERVH-int,LTR,ERV1,-1697,6016,3811,73800673,73808438 -6 - chrX 73804627 73807129 chrX,73804627,73807129,-,HERVH-int,LTR,ERV1,-4127,3586,1129,73800500,73808257 -6 - chrX 73807129 73808197 chrX,73807129,73808197,+,MER11C,LTR,ERVK,1,1071,0,73807129,73808197 +6 + chrX 73808197 73809018 chrX,73808197,73809018,-,HERVH-int,LTR,ERV1,-6585,1128,1,73801612,73809018 -6 - chrX 73809018 73809385 chrX,73809018,73809385,-,LTR7,LTR,ERV1,0,450,1,73809018,73809385 -6 - chrX 73809742 73810539 chrX,73809742,73810539,+,MER4D1,LTR,ERV1,1,889,-11,73809742,73810550 +6 + chrX 73810567 73810875 chrX,73810567,73810875,-,AluSx3,SINE,Alu,-7,304,1,73810560,73810875 -6 - chrX 73810911 73810948 chrX,73810911,73810948,-,MER58B,DNA,hAT-Charlie,-15,326,291,73810896,73811238 -6 - chrX 73810948 73811165 chrX,73810948,73811165,-,MER20,DNA,hAT-Charlie,0,219,1,73810948,73811165 -6 - chrX 73811165 73811411 chrX,73811165,73811411,-,MER58B,DNA,hAT-Charlie,-51,290,37,73811114,73811447 -6 - chrX 73811527 73811628 chrX,73811527,73811628,-,MER33,DNA,hAT-Charlie,-216,108,8,73811311,73811635 -6 - chrX 73812248 73812774 chrX,73812248,73812774,+,Tigger6a,DNA,TcMar-Tigger,48,580,-503,73812201,73813277 +6 + chrX 73813338 73813518 chrX,73813338,73813518,+,L1PA15,LINE,L1,6000,6164,-1,73807339,73813519 +6 + chrX 73813927 73814021 chrX,73813927,73814021,+,MER117,DNA,hAT-Charlie,4,100,-97,73813924,73814118 +6 + chrX 73814075 73814479 chrX,73814075,73814479,-,MLT1J2,LTR,ERVL-MaLR,-48,400,15,73814027,73814493 -6 - chrX 73814747 73814892 chrX,73814747,73814892,-,MamTip2,DNA,hAT-Tip100,-152,153,2,73814595,73814893 -6 - chrX 73816523 73816831 chrX,73816523,73816831,+,AluSq10,SINE,Alu,1,303,-10,73816523,73816841 +6 + chrX 73817147 73817247 chrX,73817147,73817247,+,UCON80_AMi,Unknown,Unknown,14,114,-108,73817134,73817355 +6 + chrX 73817247 73817385 chrX,73817247,73817385,+,MIR3,SINE,MIR,2,143,-87,73817246,73817472 +6 + chrX 73817691 73817727 chrX,73817691,73817727,+,(AAC)n,Simple_repeat,Simple_repeat,1,38,0,73817691,73817727 +6 + chrX 73819218 73819516 chrX,73819218,73819516,+,AluSx1,SINE,Alu,1,299,-13,73819218,73819529 +6 + chrX 73819646 73819940 chrX,73819646,73819940,+,AluSz,SINE,Alu,1,296,-16,73819646,73819956 +6 + chrX 73820257 73820550 chrX,73820257,73820550,+,AluSz,SINE,Alu,1,293,-19,73820257,73820569 +6 + chrX 73822433 73822514 chrX,73822433,73822514,+,L2a,LINE,L2,3342,3426,0,73819092,73822514 -6 + chrX 73822433 73822514 chrX,73822433,73822514,+,L2a,LINE,L2,3342,3426,0,73819092,73822514 +6 + chrX 73823299 73823326 chrX,73823299,73823326,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,73823299,73823326 -6 + chrX 73823299 73823326 chrX,73823299,73823326,+,(T)n,Simple_repeat,Simple_repeat,1,27,0,73823299,73823326 +6 + chrX 73823485 73823548 chrX,73823485,73823548,+,L2a,LINE,L2,3357,3425,-1,73820129,73823549 -6 + chrX 73823485 73823548 chrX,73823485,73823548,+,L2a,LINE,L2,3357,3425,-1,73820129,73823549 +6 + chrX 73824094 73824164 chrX,73824094,73824164,-,MIRc,SINE,MIR,-14,254,183,73824080,73824346 +6 - chrX 73824094 73824164 chrX,73824094,73824164,-,MIRc,SINE,MIR,-14,254,183,73824080,73824346 -6 - chrX 73824175 73824226 chrX,73824175,73824226,+,L2b,LINE,L2,3295,3345,-30,73820881,73824256 -6 + chrX 73824175 73824226 chrX,73824175,73824226,+,L2b,LINE,L2,3295,3345,-30,73820881,73824256 +6 + chrX 73824472 73824516 chrX,73824472,73824516,+,L2b,LINE,L2,3358,3402,-24,73821115,73824540 -6 + chrX 73824472 73824516 chrX,73824472,73824516,+,L2b,LINE,L2,3358,3402,-24,73821115,73824540 +6 + chrX 73824969 73824995 chrX,73824969,73824995,+,(ATTC)n,Simple_repeat,Simple_repeat,1,26,0,73824969,73824995 -6 + chrX 73824969 73824995 chrX,73824969,73824995,+,(ATTC)n,Simple_repeat,Simple_repeat,1,26,0,73824969,73824995 +6 + chrX 73825002 73825055 chrX,73825002,73825055,-,MIRc,SINE,MIR,-8,260,207,73824994,73825261 +6 - chrX 73825002 73825055 chrX,73825002,73825055,-,MIRc,SINE,MIR,-8,260,207,73824994,73825261 -6 - chrX 73825100 73825142 chrX,73825100,73825142,+,L2b,LINE,L2,3305,3346,-29,73821796,73825171 -6 + chrX 73825100 73825142 chrX,73825100,73825142,+,L2b,LINE,L2,3305,3346,-29,73821796,73825171 +6 + chrX 73825410 73825452 chrX,73825410,73825452,-,MIRc,SINE,MIR,-27,241,199,73825383,73825650 +6 - chrX 73825410 73825452 chrX,73825410,73825452,-,MIRc,SINE,MIR,-27,241,199,73825383,73825650 -6 - chrX 73825471 73825517 chrX,73825471,73825517,+,L2b,LINE,L2,3299,3344,-31,73822173,73825548 -6 + chrX 73825471 73825517 chrX,73825471,73825517,+,L2b,LINE,L2,3299,3344,-31,73822173,73825548 +6 + chrX 73825563 73825735 chrX,73825563,73825735,+,MER58C,DNA,hAT-Charlie,1,215,0,73825563,73825735 -6 + chrX 73825563 73825735 chrX,73825563,73825735,+,MER58C,DNA,hAT-Charlie,1,215,0,73825563,73825735 +6 + chrX 73826833 73826909 chrX,73826833,73826909,+,(TCTTAGG)n,Simple_repeat,Simple_repeat,1,76,0,73826833,73826909 -6 + chrX 73826833 73826909 chrX,73826833,73826909,+,(TCTTAGG)n,Simple_repeat,Simple_repeat,1,76,0,73826833,73826909 +6 + chrX 73827518 73827584 chrX,73827518,73827584,+,A-rich,Low_complexity,Low_complexity,1,68,0,73827518,73827584 -6 + chrX 73827518 73827584 chrX,73827518,73827584,+,A-rich,Low_complexity,Low_complexity,1,68,0,73827518,73827584 +6 + chrX 73828321 73828484 chrX,73828321,73828484,-,MIRb,SINE,MIR,-7,261,47,73828314,73828530 -6 - chrX 73829342 73829460 chrX,73829342,73829460,-,MIR1_Amn,SINE,MIR,-8,200,71,73829334,73829530 +6 - chrX 73837440 73837503 chrX,73836437,73837723,+,L1MC3,LINE,L1,6452,7779,-6,73829986,73837729 -3 + chrX 73841816 73841941 chrX,73841816,73841941,-,MIRc,SINE,MIR,-39,229,95,73841777,73842035 +6 - chrX 73842787 73842832 chrX,73842787,73842832,+,(GCAGAGG)n,Simple_repeat,Simple_repeat,1,48,0,73842787,73842832 -6 + chrX 73847404 73847519 chrX,73847404,73847519,-,FLAM_C,SINE,Alu,-12,131,1,73847392,73847519 +6 - chrX 73849805 73849941 chrX,73849805,73849941,+,G-rich,Low_complexity,Low_complexity,1,146,0,73849805,73849941 -6 + chrX 73852099 73852118 chrX,73852099,73852118,+,(A)n,Simple_repeat,Simple_repeat,1,19,0,73852099,73852118 -6 + chrX 73946999 73947253 chrX,73946940,73947253,-,AluSp,SINE,Alu,0,313,1,73946940,73947253 -5 - chrX 73948973 73949070 chrX,73948970,73949269,-,AluSq2,SINE,Alu,-14,299,1,73948956,73949269 -1 - chrX 73949206 73949269 chrX,73948970,73949269,-,AluSq2,SINE,Alu,-14,299,1,73948956,73949269 -1 - chrX 73949269 73949448 chrX,73949269,73949448,-,L1MC5a,LINE,L1,-297,2480,2313,73948972,73951760 -6 - chrX 73958059 73958073 chrX,73957526,73958073,+,Charlie1a,DNA,hAT-Charlie,276,850,-605,73957251,73958678 -5 + chrX 73958073 73958162 chrX,73958073,73958384,+,AluSx1,SINE,Alu,1,310,-2,73958073,73958386 -2 + chrX 73963955 73964041 chrX,73963551,73964041,-,LTR1A2,LTR,ERV1,-145,692,225,73963406,73964265 +5 - chrX 73964041 73964352 chrX,73964041,73964352,-,AluSx1,SINE,Alu,-14,298,2,73964027,73964353 +6 - chrX 73964355 73964446 chrX,73964355,73964446,-,L1M4b,LINE,L1,-5318,1549,1459,73959037,73965904 +6 - chrX 73964476 73964542 chrX,73964476,73964989,-,MER68,LTR,ERVL,-28,535,11,73964448,73964999 +2 - chrX 73969243 73969293 chrX,73968990,73969293,+,AluSx3,SINE,Alu,3,305,-6,73968988,73969299 -4 + chrX 73969293 73969387 chrX,73969293,73969387,-,L1MD3,LINE,L1,-1367,7310,7212,73967926,73976598 +6 - chrX 73994840 73994961 chrX,73994826,73995038,-,AluSp,SINE,Alu,-20,293,80,73994806,73995117 -3 - chrX 73998768 73998844 chrX,73998631,73998898,+,L1M3de,LINE,L1,927,1139,-5514,73997705,74004412 +3 + chrX 73998954 73999206 chrX,73998898,73999206,-,AluSp,SINE,Alu,-1,312,2,73998897,73999207 -5 - chrX 73999206 73999999 chrX,73999206,73999999,+,L1M3de,LINE,L1,1140,2004,-4649,73998067,74004648 +5 + chrX 74000010 74000491 chrX,74000010,74000535,+,L1MA7,LINE,L1,2454,3077,-4488,73997557,74005023 +5 + chrX 74004270 74004551 chrX,74003585,74004750,+,L1MA7,LINE,L1,5346,6549,-1013,73998240,74005763 +5 + chrX 74009389 74009899 chrX,74009387,74009899,+,L1M4b,LINE,L1,4873,5400,-1606,74004515,74011505 -5 + chrX 74009904 74009918 chrX,74009904,74010201,+,AluSx3,SINE,Alu,2,299,-12,74009903,74010213 -2 + chrX 74011094 74011145 chrX,74010831,74011145,-,AluSx1,SINE,Alu,-17,295,1,74010814,74011145 +4 - chrX 74011145 74011468 chrX,74011145,74011807,+,L1MD2,LINE,L1,5449,6143,-216,74005697,74012023 -1 + chrX 74028136 74028835 chrX,74027705,74028835,+,L1MA6,LINE,L1,3316,4576,-2986,74024390,74031821 -5 + chrX 74028821 74028977 chrX,74028821,74028977,+,L1MA6,LINE,L1,4802,4973,-2589,74024020,74031566 -6 + chrX 74028972 74029435 chrX,74028972,74029435,+,L1MA6,LINE,L1,5168,5658,-1904,74023805,74031339 -6 + chrX 74029435 74029551 chrX,74029435,74029753,+,AluY,SINE,Alu,1,310,-1,74029435,74029754 -2 + chrX 74062036 74062148 chrX,74061687,74062237,+,MER74A,LTR,ERVL,1,558,0,74061687,74062237 +3 + chrX 74069169 74069203 chrX,74067461,74069203,-,L1MA1,LINE,L1,-9,6293,4320,74067452,74073522 -2 - chrX 74070060 74070339 chrX,74070060,74070339,+,AluY,SINE,Alu,2,281,-30,74070059,74070369 +6 + chrX 74070339 74070408 chrX,74070339,74070413,+,(TAAA)n,Simple_repeat,Simple_repeat,1,74,0,74070339,74070413 +5 + chrX 74122134 74122725 chrX,74121994,74126748,-,HERVH-int,LTR,ERV1,0,7713,3070,74121994,74129817 +1 - chrX 74200229 74200428 chrX,74199941,74200428,+,L1MC2,LINE,L1,5403,5893,-451,74194539,74200879 -5 + chrX 74200424 74200918 chrX,74200424,74200918,-,L1MD,LINE,L1,-3389,2757,2212,74197035,74203129 +6 - chrX 74200936 74201188 chrX,74200936,74201188,-,L1M5,LINE,L1,-2669,3477,3219,74198267,74204406 +6 - chrX 74201182 74202190 chrX,74201182,74202190,+,L1MB7,LINE,L1,4740,5826,-358,74196443,74202548 -6 + chrX 74202190 74202495 chrX,74202190,74202495,+,AluSq,SINE,Alu,1,303,-10,74202190,74202505 -6 + chrX 74202495 74202755 chrX,74202495,74202755,+,L1MB7,LINE,L1,5827,6096,-88,74196669,74202843 -6 + chrX 74209976 74210907 chrX,74209960,74210907,+,L1ME1,LINE,L1,4316,5363,-783,74205645,74211690 -5 + chrX 74210931 74211033 chrX,74210931,74211033,+,L1MA6,LINE,L1,6176,6299,-1,74204756,74211034 -6 + chrX 74211024 74211772 chrX,74211024,74211772,+,L1ME1,LINE,L1,5375,6184,-1811,74205650,74213583 -6 + chrX 74211754 74212382 chrX,74211754,74212382,+,L1ME4a,LINE,L1,5415,6078,-46,74206340,74212428 -6 + chrX 74213299 74213325 chrX,74213299,74213325,+,(CTCC)n,Simple_repeat,Simple_repeat,1,26,0,74213299,74213325 -6 + chrX 74213502 74213588 chrX,74213502,74213588,-,L1PB3,LINE,L1,-5,6149,6064,74213497,74219651 +6 - chrX 74213589 74213660 chrX,74213589,74213937,+,L1PB,LINE,L1,4771,5118,-1028,74208819,74214965 -1 + chrX 74278374 74278650 chrX,74278358,74278650,-,AluSc,SINE,Alu,-15,294,3,74278343,74278652 +5 - chrX 74278655 74278785 chrX,74278655,74278785,-,AluJo,SINE,Alu,-179,133,1,74278476,74278785 +6 - chrX 74279081 74279128 chrX,74279081,74279128,+,A-rich,Low_complexity,Low_complexity,1,44,0,74279081,74279128 -6 + chrX 74279128 74279305 chrX,74279128,74279305,+,FLAM_C,SINE,Alu,1,143,0,74279128,74279305 -6 + chrX 74279305 74279497 chrX,74279305,74279497,+,MIRb,SINE,MIR,37,257,-11,74279269,74279508 -6 + chrX 74279991 74280156 chrX,74279991,74280156,-,MER58A,DNA,hAT-Charlie,0,224,46,74279991,74280201 +6 - chrX 74293413 74293448 chrX,74293413,74293448,+,GA-rich,Low_complexity,Low_complexity,1,35,0,74293413,74293448 -6 + chrX 75903105 75903175 chrX,75902485,75903689,-,HERV17-int,LTR,ERV1,-6612,2014,800,75895873,75904488 -1 - chrX 75903867 75904563 chrX,75903867,75904563,-,HERV17-int,LTR,ERV1,-7942,684,1,75895925,75904563 -6 - chrX 75904577 75904858 chrX,75904577,75905073,-,LTR17,LTR,ERV1,-7,773,257,75904570,75905329 -5 - chrX 83506312 83506339 chrX,83506312,83506339,+,(GA)n,Simple_repeat,Simple_repeat,1,27,0,83506312,83506339 -6 + chrX 89423738 89423795 chrX,89423476,89423876,+,MSTD,LTR,ERVL-MaLR,3,396,0,89423474,89423876 +1 + chrX 89446796 89446894 chrX,89446785,89446894,-,L1M5,LINE,L1,-477,5647,5534,89446308,89452427 -2 - chrX 89446913 89446983 chrX,89446913,89446990,+,(ATTTAT)n,Simple_repeat,Simple_repeat,1,82,0,89446913,89446990 +5 + chrX 91307781 91307932 chrX,91306416,91308031,-,L1M1,LINE,L1,-5810,1755,12,91300606,91308042 -1 - chrX 91308290 91308614 chrX,91308237,91308614,+,L1PA11,LINE,L1,5801,6174,0,91302437,91308614 +2 + chrX 91308738 91308878 chrX,91308738,91308948,-,LTR16,LTR,ERVL,-219,219,1,91308519,91308948 -5 - chrX 91418784 91418870 chrX,91418756,91418870,+,MER81,DNA,hAT-Blackjack,1,114,0,91418756,91418870 -4 + chrX 91434947 91434999 chrX,91434947,91435006,+,(GTCT)n,Simple_repeat,Simple_repeat,1,61,0,91434947,91435006 -1 + chrX 97453979 97454018 chrX,97453972,97454344,+,Tigger15a,DNA,TcMar-Tigger,28,390,-325,97453945,97454669 -3 + chrX 97528365 97528742 chrX,97528316,97528742,-,MSTB1,LTR,ERVL-MaLR,0,432,3,97528316,97528744 +5 - chrX 97528841 97529066 chrX,97528841,97529086,+,AluSg,SINE,Alu,44,293,-17,97528798,97529103 -2 + chrX 97533173 97533429 chrX,97533030,97533802,-,L1MC4,LINE,L1,-4,8038,7176,97533026,97540977 +5 - chrX 97564380 97564533 chrX,97564312,97564703,-,MLT1A1,LTR,ERVL-MaLR,-3,405,1,97564309,97564703 +1 - chrX 97602811 97603011 chrX,97602178,97603275,-,MLT1D-int,LTR,ERVL-MaLR,0,1489,412,97602178,97603686 +5 - chrX 97642472 97642589 chrX,97642182,97642635,+,L2a,LINE,L2,2655,3066,-353,97639528,97642988 -1 + chrX 100673491 100673589 chrX,100673491,100673589,+,(CT)n,Simple_repeat,Simple_repeat,1,104,0,100673491,100673589 +6 + chrX 100673588 100673612 chrX,100673588,100673612,+,(CACA)n,Simple_repeat,Simple_repeat,1,24,0,100673588,100673612 +6 + chrX 100673826 100673942 chrX,100673826,100673942,+,MIRb,SINE,MIR,117,255,-7,100673710,100673949 +6 + chrX 101043564 101043583 chrX,101043293,101043583,+,AluSg,SINE,Alu,5,294,-16,101043289,101043599 -5 + chrX 101043583 101043655 chrX,101043583,101043706,-,AluJo,SINE,Alu,-191,121,1,101043392,101043706 +2 - chrX 101094364 101094414 chrX,101094123,101094414,-,AluSx1,SINE,Alu,-18,294,1,101094105,101094414 +4 - chrX 101628131 101628399 chrX,101628131,101628399,-,L2,LINE,L2,-901,2518,2242,101627230,101630640 -6 - chrX 102605760 102605892 chrX,102605760,102606486,-,L1M4,LINE,L1,-419,5761,5022,102605341,102611507 -5 - chrX 102637996 102638045 chrX,102637218,102638429,-,L1MC1,LINE,L1,-8,6500,5303,102637210,102643731 -3 - chrX 102639400 102639447 chrX,102639116,102639447,-,L1MC1,LINE,L1,-6152,356,2,102632964,102639448 -2 - chrX 102639448 102639775 chrX,102639448,102639775,-,L2a,LINE,L2,-1669,1750,1421,102637779,102641195 -5 - chrX 102639784 102639913 chrX,102639784,102639913,-,L1MB5,LINE,L1,-6,6174,6040,102639778,102645952 -6 - chrX 102639913 102640336 chrX,102639913,102640336,+,MLT1C,LTR,ERVL-MaLR,3,436,-31,102639911,102640367 +6 + chrX 102640397 102640507 chrX,102640397,102641252,-,L1MB5,LINE,L1,-171,6003,5126,102640226,102646377 -5 - chrX 102649644 102649714 chrX,102649469,102649776,-,LTR45B,LTR,ERV1,-131,358,4,102649338,102649779 +3 - chrX 102649954 102650145 chrX,102649776,102650238,-,MLT1D,LTR,ERVL-MaLR,-36,469,1,102649740,102650238 -5 - chrX 102770352 102770420 chrX,102769860,102770751,-,L1MA8,LINE,L1,-48,6243,5340,102769812,102776090 -3 - chrX 102817069 102817082 chrX,102817069,102817198,-,MIR3,SINE,MIR,-61,147,16,102817008,102817213 -4 - chrX 102826121 102826155 chrX,102826121,102826155,+,(ACCATC)n,Simple_repeat,Simple_repeat,1,34,0,102826121,102826155 +6 + chrX 102865494 102865795 chrX,102865494,102865795,-,AluSc,SINE,Alu,-8,301,1,102865486,102865795 -6 - chrX 102866546 102866630 chrX,102866546,102866630,-,L2a,LINE,L2,0,3426,3342,102866546,102869971 -6 - chrX 102866632 102866759 chrX,102866632,102866759,-,MER53,DNA,hAT,-4,189,20,102866628,102866778 -6 - chrX 102885079 102885406 chrX,102885079,102886702,-,L1ME1,LINE,L1,-176,6003,4368,102884903,102891069 -5 - chrX 102901023 102901133 chrX,102901013,102901196,+,MER3,DNA,hAT-Charlie,20,205,-4,102900994,102901200 +3 + chrX 102906135 102906158 chrX,102906135,102906290,-,MIRb,SINE,MIR,-8,254,92,102906127,102906381 -5 - chrX 103596608 103597158 chrX,103596501,103597158,-,L1MCa,LINE,L1,-5586,1165,427,103590915,103597584 -1 - chrX 103597330 103597496 chrX,103597330,103597496,+,MIR,SINE,MIR,1,188,-20,103597330,103597516 +6 + chrX 103597616 103597966 chrX,103597616,103597966,-,L1M5,LINE,L1,-3283,2863,2491,103594333,103600456 -6 - chrX 103597970 103598316 chrX,103597970,103598316,-,L1ME3D,LINE,L1,-13,6229,5864,103597957,103604179 -6 - chrX 103598324 103598621 chrX,103598324,103598621,+,MLT1A0,LTR,ERVL-MaLR,9,354,-11,103598316,103598632 +6 + chrX 103598624 103598904 chrX,103598624,103599355,-,L1ME3D,LINE,L1,-370,5872,5035,103598254,103604389 -5 - chrX 103626313 103626492 chrX,103626313,103626798,+,L3,LINE,CR1,3244,3804,-295,103623070,103627093 -1 + chrX 103688645 103688754 chrX,103688645,103688754,+,MIRb,SINE,MIR,37,142,-126,103688609,103688880 +6 + chrX 103688924 103689117 chrX,103688924,103689117,+,MER5A,DNA,hAT-Charlie,1,189,0,103688924,103689117 +6 + chrX 103689229 103689352 chrX,103689229,103689352,-,MIRb,SINE,MIR,-107,161,26,103689122,103689377 -6 - chrX 103691419 103691532 chrX,103691389,103691532,-,MER91A,DNA,hAT-Tip100,-36,160,1,103691353,103691532 -2 - chrX 103917411 103917473 chrX,103917046,103917473,-,MLT1B,LTR,ERVL-MaLR,-2,388,4,103917044,103917476 +5 - chrX 103917615 103917642 chrX,103917615,103917642,+,(AC)n,Simple_repeat,Simple_repeat,1,27,0,103917615,103917642 -6 + chrX 103917644 103917682 chrX,103917644,103917682,+,(TA)n,Simple_repeat,Simple_repeat,1,38,0,103917644,103917682 -6 + chrX 103919452 103919548 chrX,103919452,103919627,-,MIRb,SINE,MIR,-14,254,37,103919438,103919663 +1 - chrX 107894626 107894828 chrX,107894626,107894828,-,L2a,LINE,L2,0,3426,3204,107894626,107898031 +6 - chrX 107894828 107894865 chrX,107894828,107894865,+,(GT)n,Simple_repeat,Simple_repeat,1,37,0,107894828,107894865 -6 + chrX 107894865 107894885 chrX,107894865,107894885,-,L2a,LINE,L2,-223,3203,3183,107894642,107898067 +6 - chrX 107894998 107895697 chrX,107894998,107895697,-,L1MD2,LINE,L1,-16,6343,5633,107894982,107901329 +6 - chrX 107895759 107895947 chrX,107895759,107895947,+,MIR3,SINE,MIR,8,201,-7,107895752,107895954 -6 + chrX 107896073 107896360 chrX,107896073,107896380,+,AluSz,SINE,Alu,11,299,-13,107896063,107896393 -2 + chrX 108719997 108720033 chrX,108719997,108720033,+,(AT)n,Simple_repeat,Simple_repeat,1,36,0,108719997,108720033 -6 + chrX 108721141 108721182 chrX,108721141,108721182,+,(AC)n,Simple_repeat,Simple_repeat,1,41,0,108721141,108721182 -6 + chrX 108722595 108722624 chrX,108722595,108722624,+,(AAAAC)n,Simple_repeat,Simple_repeat,1,29,0,108722595,108722624 -6 + chrX 108723363 108723461 chrX,108723363,108723461,-,FRAM,SINE,Alu,-23,153,63,108723340,108723523 +6 - chrX 108723597 108723710 chrX,108723597,108723710,+,AluJb,SINE,Alu,2,114,-198,108723596,108723908 -6 + chrX 108723710 108723762 chrX,108723710,108723762,+,AluJb,SINE,Alu,238,289,-13,108723473,108723775 -6 + chrX 108724387 108724666 chrX,108724387,108724666,-,Tigger19a,DNA,TcMar-Tigger,-2,321,31,108724385,108724696 +6 - chrX 108725933 108726097 chrX,108725933,108726097,+,Tigger19a,DNA,TcMar-Tigger,1,165,-158,108725933,108726255 -6 + chrX 108726097 108726349 chrX,108726097,108726349,-,Tigger16b,DNA,TcMar-Tigger,-1,335,70,108726096,108726418 +6 - chrX 108736259 108736293 chrX,108736259,108736293,+,(CTG)n,Simple_repeat,Simple_repeat,1,34,0,108736259,108736293 +6 + chrX 108738642 108738661 chrX,108738642,108738661,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,108738642,108738661 +6 + chrX 108738784 108738903 chrX,108738784,108739163,-,L1ME4c,LINE,L1,-126,704,285,108738658,108739447 -5 - chrX 110306747 110306757 chrX,110306449,110306757,-,AluSp,SINE,Alu,-4,309,1,110306445,110306757 +4 - chrX 110306870 110306949 chrX,110306870,110306949,+,L1MB1,LINE,L1,6081,6168,0,110300790,110306949 -6 + chrX 110306955 110307221 chrX,110306955,110307263,+,AluSx1,SINE,Alu,1,300,-12,110306955,110307275 -1 + chrX 111521777 111521853 chrX,111521777,111521853,-,MADE2,DNA,TcMar-Mariner,-4,76,1,111521773,111521853 -6 - chrX 111521990 111522017 chrX,111521990,111522017,+,(TATG)n,Simple_repeat,Simple_repeat,1,30,0,111521990,111522017 +6 + chrX 111706649 111706737 chrX,111706474,111706778,+,AluJo,SINE,Alu,1,299,-13,111706474,111706791 -5 + chrX 111710996 111711029 chrX,111710996,111711029,+,L1ME2,LINE,L1,6305,6331,-3,111704692,111711032 -4 + chrX 111876154 111876189 chrX,111876154,111876263,+,MamTip2,DNA,hAT-Tip100,103,219,-86,111876052,111876349 +4 + chrX 111895979 111896096 chrX,111895979,111896310,-,L1MEg2,LINE,L1,-5938,514,162,111890041,111896471 -4 - chrX 113616438 113616674 chrX,113616438,113616929,-,MLT1J,LTR,ERVL-MaLR,0,512,3,113616438,113616931 +2 - chrX 113938198 113938218 chrX,113938198,113938358,-,L2a,LINE,L2,-1,3425,3257,113938197,113941614 +1 - chrX 115518182 115518456 chrX,115518096,115518456,+,MER47A,DNA,TcMar-Tigger,1,366,0,115518096,115518456 -5 + chrX 115518470 115518523 chrX,115518470,115518523,+,L1MA9,LINE,L1,6254,6307,-5,115512217,115518528 -6 + chrX 115518549 115518645 chrX,115518549,115518645,-,MER53,DNA,hAT,0,193,97,115518549,115518741 +6 - chrX 115519062 115519251 chrX,115519062,115519251,-,MER117,DNA,hAT-Charlie,-4,193,2,115519058,115519252 +6 - chrX 115519257 115519390 chrX,115519257,115519390,+,MER91A,DNA,hAT-Tip100,15,173,-23,115519243,115519413 -6 + chrX 115519597 115519711 chrX,115519597,115519884,+,AluJr,SINE,Alu,2,286,-26,115519596,115519910 -2 + chrX 115520541 115520653 chrX,115520541,115520849,-,CR1_Mam,LINE,CR1,-221,1983,1691,115520320,115522539 +2 - chrX 115527627 115527768 chrX,115527626,115527781,+,AluJr,SINE,Alu,138,292,-20,115527489,115527801 -3 + chrX 115842644 115842763 chrX,115842621,115842951,-,AluJb,SINE,Alu,-13,299,1,115842608,115842951 -3 - chrX 115842840 115842951 chrX,115842621,115842951,-,AluJb,SINE,Alu,-13,299,1,115842608,115842951 -2 - chrX 115917271 115919149 chrX,115916898,115923779,-,Harlequin-int,LTR,ERV1,0,6896,1,115916898,115923779 +5 - chrX 117894632 117894812 chrX,117894501,117894812,+,MER58B,DNA,hAT-Charlie,3,341,0,117894499,117894812 -5 + chrX 117894996 117895034 chrX,117894996,117895034,+,A-rich,Low_complexity,Low_complexity,1,39,0,117894996,117895034 -6 + chrX 118841815 118841865 chrX,118841317,118841957,-,L1MB7,LINE,L1,-88,6096,5421,118841229,118847377 -3 - chrX 118845963 118846064 chrX,118845963,118846155,+,MamRep605,LTR?,LTR?,256,450,-399,118845708,118846554 +4 + chrX 118855467 118855555 chrX,118855467,118855641,-,MLT1J1,LTR,ERVL-MaLR,-172,239,66,118855295,118855706 -4 - chrX 118856353 118856394 chrX,118856353,118856394,+,(CA)n,Simple_repeat,Simple_repeat,1,41,0,118856353,118856394 +6 + chrX 118857110 118857598 chrX,118857110,118857598,+,Tigger1,DNA,TcMar-Tigger,1,492,-1926,118857110,118859524 +6 + chrX 118857598 118857886 chrX,118857598,118857905,+,AluY,SINE,Alu,1,306,-5,118857598,118857910 +5 + chrX 119291529 119291621 chrX,119291327,119291697,+,MSTA,LTR,ERVL-MaLR,1,428,0,119291327,119291697 +1 + chrX 119324907 119325023 chrX,119324874,119325080,-,AluSp,SINE,Alu,-7,306,104,119324867,119325183 -3 - chrX 119326228 119326317 chrX,119326228,119326388,-,MER91A,DNA,hAT-Tip100,0,196,28,119326228,119326415 -4 - chrX 119333050 119333359 chrX,119331691,119333359,+,LTR12C,LTR,ERV1,3,1579,0,119331689,119333359 +2 + chrX 119333415 119334862 chrX,119333415,119334862,+,LTR12C,LTR,ERV1,5,1579,0,119333411,119334862 +6 + chrX 119334862 119334887 chrX,119334862,119334887,-,AluJb,SINE,Alu,-152,150,125,119334710,119335011 -6 - chrX 119334894 119335018 chrX,119334894,119335018,-,AluSz6,SINE,Alu,-187,125,1,119334707,119335018 -6 - chrX 119335018 119335173 chrX,119335018,119335173,-,L1P4,LINE,L1,-1101,5045,4883,119333917,119340055 -6 - chrX 119335282 119335610 chrX,119335282,119335657,+,MSTC,LTR,ERVL-MaLR,1,428,0,119335282,119335657 +5 + chrX 119356303 119356412 chrX,119356303,119356412,-,AluJr,SINE,Alu,-196,116,5,119356107,119356416 +6 - chrX 119356412 119356444 chrX,119356412,119356629,+,L1ME4b,LINE,L1,11,43,-849,119356402,119357478 -2 + chrX 119383759 119383879 chrX,119383675,119384040,-,MLT1J2,LTR,ERVL-MaLR,-6,442,68,119383669,119384107 +3 - chrX 119393226 119393374 chrX,119393142,119393374,-,THE1B,LTR,ERVL-MaLR,0,364,138,119393142,119393511 +4 - chrX 119422983 119423245 chrX,119422983,119423245,-,MER8,DNA,TcMar-Tigger,0,239,1,119422983,119423245 -6 - chrX 119423515 119423547 chrX,119423247,119423556,+,AluSx,SINE,Alu,1,310,-2,119423247,119423558 +5 + chrX 119423247 119423316 chrX,119423247,119423556,+,AluSx,SINE,Alu,1,310,-2,119423247,119423558 +5 + chrX 119466034 119466269 chrX,119465962,119466269,-,L1MC4a,LINE,L1,-1,7881,7534,119465961,119473802 +5 - chrX 119467077 119467121 chrX,119467077,119467121,+,A-rich,Low_complexity,Low_complexity,1,44,0,119467077,119467121 -6 + chrX 119467747 119468121 chrX,119467747,119468121,+,MER96B,DNA,hAT-Tip100,9,417,0,119467739,119468121 -6 + chrX 119695770 119695939 chrX,119695770,119695939,+,(GT)n,Simple_repeat,Simple_repeat,1,172,0,119695770,119695939 +6 + chrX 119921837 119921923 chrX,119921837,119922140,-,AluSc8,SINE,Alu,-8,303,2,119921829,119922141 +2 - chrX 119922694 119922745 chrX,119922445,119922745,+,AluSz,SINE,Alu,1,301,-11,119922445,119922756 -4 + chrX 120010718 120010791 chrX,120010331,120010932,+,L1MCb,LINE,L1,1391,2017,-4734,120008941,120015666 -5 + chrX 120036236 120036296 chrX,120035804,120036296,-,LTR2B,LTR,ERV1,0,483,1,120035804,120036296 -1 - chrX 120036296 120036532 chrX,120036296,120036820,+,MER4-int,LTR,ERV1,176,812,-5786,120036121,120042606 +4 + chrX 120070672 120070727 chrX,120070524,120070727,+,MIRb,SINE,MIR,24,260,-8,120070501,120070735 -5 + chrX 120117862 120117911 chrX,120117855,120117980,+,MIR,SINE,MIR,76,201,-61,120117780,120118041 -3 + chrX 120119540 120119578 chrX,120119374,120119578,+,MER113A,DNA,hAT-Charlie,135,314,0,120119240,120119578 -4 + chrX 120120927 120120956 chrX,120120927,120120956,+,(AGC)n,Simple_repeat,Simple_repeat,1,29,0,120120927,120120956 +6 + chrX 120126982 120127100 chrX,120126982,120127126,+,MER31-int,LTR,ERV1,28,173,-4763,120126955,120131889 +5 + chrX 120138998 120139119 chrX,120138967,120139275,-,AluSc8,SINE,Alu,-3,308,1,120138964,120139275 -3 - chrX 120143723 120143900 chrX,120143635,120144308,+,HERVIP10FH-int,LTR,ERV1,4,843,-4259,120143632,120148567 +3 + chrX 120145638 120146095 chrX,120145595,120146095,+,HERVIP10FH-int,LTR,ERV1,2653,3153,-3743,120142943,120149838 +2 + chrX 120146402 120146854 chrX,120146402,120146890,+,LTR15,LTR,ERV1,1,493,0,120146402,120146890 +5 + chrX 121871869 121872087 chrX,121871541,121872087,-,L1MC4,LINE,L1,-1121,5025,4477,121870420,121876563 -1 - chrX 121872332 121872748 chrX,121872332,121872748,-,L1MC4,LINE,L1,-5580,662,240,121866752,121872987 -6 - chrX 121872763 121872908 chrX,121872763,121872908,-,L1MC4a,LINE,L1,-15,7867,7721,121872748,121880628 -6 - chrX 121872908 121872986 chrX,121872908,121872986,-,L1MD2,LINE,L1,-217,6142,6060,121872691,121879045 -6 - chrX 121873939 121874344 chrX,121873939,121874344,-,MER92A,LTR,ERV1,0,412,1,121873939,121874344 -6 - chrX 121874367 121874518 chrX,121874367,121874518,+,L3,LINE,CR1,3960,4095,-4,121870408,121874522 +6 + chrX 121876226 121876289 chrX,121876226,121876289,+,L1PA16,LINE,L1,6107,6160,-6,121870120,121876295 +6 + chrX 121876305 121876404 chrX,121876305,121876404,+,MER2,DNA,TcMar-Tigger,151,239,-106,121876155,121876510 +6 + chrX 121876404 121876711 chrX,121876404,121876711,+,LTR24,LTR,ERV1,1,420,-47,121876404,121876758 +6 + chrX 122242008 122242359 chrX,122241903,122242359,-,MER61D,LTR,ERV1,0,501,1,122241903,122242359 -1 - chrX 123872626 123872698 chrX,123872405,123872698,+,AluSx,SINE,Alu,1,293,-19,123872405,123872717 -5 + chrX 123872698 123872760 chrX,123872698,123872760,-,LTR83,LTR,ERVL,-185,595,544,123872513,123873303 +6 - chrX 123872775 123872866 chrX,123872775,123872866,-,LTR83,LTR,ERVL,-317,463,373,123872458,123873238 +6 - chrX 123872871 123872983 chrX,123872871,123873027,-,AluJb,SINE,Alu,-22,290,137,123872849,123873163 +2 - chrX 123873809 123873932 chrX,123873650,123873950,+,AluSz,SINE,Alu,8,299,-13,123873643,123873963 -1 + chrX 126004446 126004902 chrX,126004430,126004902,-,L1MA3,LINE,L1,-2,7721,7244,126004428,126012145 +5 - chrX 126004918 126006118 chrX,126004918,126013083,+,L1PREC2,LINE,L1,7,8155,0,126004912,126013083 -1 + chrX 126109762 126109804 chrX,126104124,126110137,-,L1PA3,LINE,L1,0,6155,125,126104124,126110261 -1 - chrX 126109914 126110137 chrX,126104124,126110137,-,L1PA3,LINE,L1,0,6155,125,126104124,126110261 -1 - chrX 126115202 126115371 chrX,126114776,126115371,+,MLT1E1A,LTR,ERVL-MaLR,1,680,0,126114776,126115371 +2 + chrX 126115449 126115550 chrX,126115449,126115550,+,L2c,LINE,L2,3285,3386,-1,126112165,126115551 +6 + chrX 127393446 127394197 chrX,127393446,127394197,+,L1MB5,LINE,L1,5887,6652,-20,127387560,127394217 +6 + chrX 127394636 127394771 chrX,127394636,127395503,+,LTR12,LTR,ERV1,1,826,0,127394636,127395503 +5 + chrX 127660631 127660978 chrX,127659799,127660978,+,L1MEf,LINE,L1,2210,3625,-3940,127657590,127664918 -5 + chrX 127660981 127661051 chrX,127660981,127661051,+,L1PA3,LINE,L1,6087,6152,-3,127654895,127661054 -6 + chrX 127661098 127661294 chrX,127661098,127661294,+,L1MEf,LINE,L1,3976,4195,-3364,127657123,127664658 -6 + chrX 127661356 127662012 chrX,127661356,127662012,+,L1P4a,LINE,L1,227,917,-5776,127661130,127667788 -6 + chrX 127662012 127662530 chrX,127662012,127663525,-,LTR12C,LTR,ERV1,0,1579,3,127662012,127663527 +1 - chrX 129869064 129869088 chrX,129868933,129869088,+,L2,LINE,L2,2289,2468,-951,129866645,129870039 -5 + chrX 129869088 129869296 chrX,129869088,129869561,-,MLT2B1,LTR,ERVL,0,520,1,129869088,129869561 +2 - chrX 130477069 130477249 chrX,130476984,130477401,-,LTR47B4,LTR,ERVL,0,434,12,130476984,130477412 +5 - chrX 130493735 130493807 chrX,130493713,130493807,+,LTR81B,LTR,Gypsy,1081,1162,-231,130492633,130494038 -4 + chrX 130510555 130510841 chrX,130510555,130510862,+,AluJo,SINE,Alu,1,302,-10,130510555,130510872 -2 + chrX 130512413 130512479 chrX,130512413,130513419,-,MER11A,LTR,ERVK,0,1266,1,130512413,130513419 +2 - chrX 130513726 130513802 chrX,130513527,130513829,+,AluJb,SINE,Alu,1,302,-10,130513527,130513839 -3 + chrX 130981590 130981724 chrX,130981488,130981724,+,Helitron1Nb_Mam,RC,Helitron,69,324,-792,130981420,130982516 -5 + chrX 130981729 130981856 chrX,130981729,130981983,+,Helitron1Na_Mam,RC,Helitron,817,1062,0,130980913,130981983 -2 + chrX 131016469 131016521 chrX,131016362,131016540,-,MLT1A,LTR,ERVL-MaLR,-11,363,175,131016351,131016714 +5 - chrX 131702650 131702663 chrX,131702614,131702663,+,A-rich,Low_complexity,Low_complexity,1,49,0,131702614,131702663 -5 + chrX 131702857 131702907 chrX,131702857,131702907,+,PABL_B,LTR,ERV1,1,50,-617,131702857,131703524 -6 + chrX 131703043 131703349 chrX,131703043,131703349,+,AluSp,SINE,Alu,1,307,-6,131703043,131703355 -6 + chrX 131703485 131703518 chrX,131703485,131703872,+,PABL_B,LTR,ERV1,283,667,0,131703203,131703872 -2 + chrX 131709498 131709556 chrX,131709327,131709846,-,MER1A,DNA,hAT-Charlie,-1,528,1,131709326,131709846 +3 - chrX 131711692 131711720 chrX,131711692,131711777,+,Alu,SINE,Alu,227,311,0,131711466,131711777 -2 + chrX 131756611 131756709 chrX,131756588,131756710,-,AluJr,SINE,Alu,-187,125,2,131756401,131756711 +3 - chrX 131794354 131794466 chrX,131794354,131794480,+,FLAM_A,SINE,Alu,1,128,-14,131794354,131794494 -2 + chrX 131805021 131805037 chrX,131805021,131805134,+,L1M5,LINE,L1,3438,3546,-2600,131801584,131807734 -2 + chrX 132429813 132429943 chrX,132429811,132429943,+,MIRc,SINE,MIR,20,154,-114,132429792,132430057 +2 + chrX 132430219 132430765 chrX,132430219,132430765,-,L1MC4a,LINE,L1,-11,7871,7304,132430208,132438068 -6 - chrX 132430765 132431072 chrX,132430765,132431072,-,AluJr,SINE,Alu,-6,306,1,132430759,132431072 -6 - chrX 132431072 132432006 chrX,132431072,132432006,-,L1MC4a,LINE,L1,-579,7303,6344,132430493,132438349 -6 - chrX 132431980 132432087 chrX,132431980,132432087,-,L1MC,LINE,L1,-3777,2369,2262,132428203,132434348 -6 - chrX 132432095 132432276 chrX,132432095,132432276,+,L1ME4b,LINE,L1,626,833,-59,132431470,132432335 +6 + chrX 132432302 132432745 chrX,132432302,132432745,-,L1MB7,LINE,L1,-16,6168,5752,132432286,132438496 -6 - chrX 132432780 132432822 chrX,132432780,132432822,+,A-rich,Low_complexity,Low_complexity,1,44,0,132432780,132432822 +6 + chrX 132432833 132432862 chrX,132432833,132432862,+,A-rich,Low_complexity,Low_complexity,1,29,0,132432833,132432862 +5 + chrX 134543372 134543508 chrX,134543372,134543508,-,L1ME4c,LINE,L1,-32,798,661,134543340,134544168 +5 - chrX 134559386 134559666 chrX,134559190,134559666,+,MLT1F2,LTR,ERVL-MaLR,2,560,0,134559189,134559666 +2 + chrX 134599457 134599527 chrX,134599234,134599609,+,THE1C,LTR,ERVL-MaLR,1,375,0,134599234,134599609 +1 + chrX 134600890 134600978 chrX,134600890,134601015,-,AluJr,SINE,Alu,-48,264,133,134600842,134601147 -4 - chrX 134604499 134604563 chrX,134604499,134604563,-,Helitron2Na_Mam,RC?,Helitron?,-74,250,187,134604425,134604749 -6 - chrX 134605773 134605849 chrX,134605773,134605849,-,L2c,LINE,L2,-38,3349,3272,134605735,134609120 -6 - chrX 134605959 134606254 chrX,134605959,134606255,+,AluSc8,SINE,Alu,1,295,-16,134605959,134606271 +5 + chrX 134949549 134949569 chrX,134949285,134949569,+,MLT1D,LTR,ERVL-MaLR,90,379,-126,134949196,134949695 +1 + chrX 134950200 134950467 chrX,134950107,134950467,+,MLT2B4,LTR,ERVL,87,459,-61,134950021,134950528 +2 + chrX 134950471 134950535 chrX,134950471,134950867,+,L1P3,LINE,L1,5,407,-6054,134950467,134956921 +4 + chrX 135059685 135059734 chrX,135059316,135060073,+,MER66-int,LTR,ERV1,50,795,-5881,135059267,135065954 +1 + chrX 135095226 135095254 chrX,135095226,135095254,+,G-rich,Low_complexity,Low_complexity,1,28,0,135095226,135095254 -6 + chrX 135098352 135098396 chrX,135098352,135098396,+,(CGC)n,Simple_repeat,Simple_repeat,1,46,0,135098352,135098396 -6 + chrX 135098547 135098634 chrX,135098547,135098665,+,(GCC)n,Simple_repeat,Simple_repeat,1,119,0,135098547,135098665 -1 + chrX 135116758 135116877 chrX,135116749,135116877,+,LTR33,LTR,ERVL,46,178,-337,135116704,135117214 +1 + chrX 135123844 135123911 chrX,135123844,135123911,+,LTR78,LTR,ERV1,292,357,-947,135123553,135124858 +6 + chrX 135422099 135422175 chrX,135422099,135422175,+,(CGGCGG)n,Simple_repeat,Simple_repeat,1,77,0,135422099,135422175 +6 + chrX 135423745 135423833 chrX,135423745,135423833,-,L2b,LINE,L2,-281,3094,3004,135423464,135426836 -6 - chrX 135423874 135424025 chrX,135423874,135424025,-,MIRb,SINE,MIR,-79,189,34,135423795,135424058 -6 - chrX 135426814 135426886 chrX,135426814,135426886,+,MIR3,SINE,MIR,30,100,-108,135426785,135426994 +6 + chrX 135427027 135427155 chrX,135427027,135427155,-,MIRb,SINE,MIR,-6,256,110,135427021,135427264 -6 - chrX 135427825 135428016 chrX,135427825,135428016,-,L1M5,LINE,L1,-381,5743,5524,135427444,135433539 -6 - chrX 136639709 136639804 chrX,136639709,136639834,+,MIR3,SINE,MIR,3,130,-100,136639707,136639934 +1 + chrX 136640863 136641178 chrX,136640863,136641178,+,L2c,LINE,L2,3022,3371,-4,136637842,136641182 +6 + chrX 136641287 136641319 chrX,136641287,136641319,+,(GTTT)n,Simple_repeat,Simple_repeat,1,33,0,136641287,136641319 +6 + chrX 136641925 136642163 chrX,136641925,136642163,+,L2c,LINE,L2,3159,3386,-1,136638767,136642164 +6 + chrX 136840931 136841213 chrX,136840916,136841213,-,AluSz,SINE,Alu,-15,297,1,136840901,136841213 +5 - chrX 136841213 136841260 chrX,136841213,136841260,-,L1MDa,LINE,L1,-2991,3546,3501,136838222,136844760 +6 - chrX 136841260 136841397 chrX,136841260,136841397,-,FLAM_C,SINE,Alu,-8,135,1,136841252,136841397 +6 - chrX 136841397 136841529 chrX,136841397,136841529,-,L1MDa,LINE,L1,-3037,3500,3384,136838360,136844912 +6 - chrX 136841529 136842023 chrX,136841529,136842023,+,L1MB7,LINE,L1,5542,6052,-132,136835988,136842155 -6 + chrX 136842023 136842194 chrX,136842023,136842194,-,AluJo,SINE,Alu,-13,299,134,136842010,136842327 +6 - chrX 136842194 136842300 chrX,136842194,136842300,+,L1MB7,LINE,L1,6051,6139,-45,136836144,136842345 -6 + chrX 136842302 136842442 chrX,136842302,136842442,+,AluJo,SINE,Alu,2,150,-162,136842301,136842604 -6 + chrX 136842448 136842501 chrX,136842448,136842501,-,L1MDa,LINE,L1,-3315,3222,3170,136839133,136845670 +6 - chrX 136842501 136842695 chrX,136842501,136842695,+,MLT1E2,LTR,ERVL-MaLR,1,213,-414,136842501,136843109 -6 + chrX 136842695 136842850 chrX,136842695,136842988,+,AluSq,SINE,Alu,2,295,-18,136842694,136843006 -2 + chrX 136846784 136847091 chrX,136846784,136847091,-,AluSz,SINE,Alu,0,312,1,136846784,136847091 +6 - chrX 137560669 137560701 chrX,137560659,137560701,+,(AATTGCA)n,Simple_repeat,Simple_repeat,1,43,0,137560659,137560701 -5 + chrX 138711452 138711515 chrX,138711422,138711515,+,(GGCG)n,Simple_repeat,Simple_repeat,1,96,0,138711422,138711515 +1 + chrX 138716434 138716595 chrX,138716434,138716595,+,AluJo,SINE,Alu,137,297,-15,138716298,138716610 +6 + chrX 140017783 140017838 chrX,140017783,140017838,+,(AAGACAA)n,Simple_repeat,Simple_repeat,1,56,0,140017783,140017838 +6 + chrX 140711621 140711676 chrX,140711195,140711676,-,L1ME4a,LINE,L1,-12,6112,5598,140711183,140717273 -2 - chrX 140711868 140712022 chrX,140711868,140712022,-,L1M2,LINE,L1,-1088,5055,4900,140710780,140716921 -6 - chrX 140712043 140712176 chrX,140712043,140712176,-,MamGyp-int,LTR,Gypsy,-224,4879,4745,140711819,140716920 -6 - chrX 140714238 140714284 chrX,140714238,140714284,+,(ACAGACC)n,Simple_repeat,Simple_repeat,1,49,0,140714238,140714284 +6 + chrX 140714541 140714822 chrX,140714541,140714850,+,AluSp,SINE,Alu,2,311,-2,140714540,140714852 +5 + chrX 140716203 140716289 chrX,140716203,140716427,+,MIR,SINE,MIR,9,236,-26,140716195,140716453 +4 + chrX 140996649 140996688 chrX,140996311,140997384,+,MER4-int,LTR,ERV1,2,1182,-5416,140996310,141002800 +3 + chrX 140997395 140997448 chrX,140997390,140997772,-,LTR10E,LTR,ERV1,-21,612,214,140997369,140997985 -5 - chrX 141502849 141503239 chrX,141502747,141503606,-,LTR17,LTR,ERV1,-72,708,1,141502675,141503606 -1 - chrX 141514712 141514829 chrX,141514689,141514905,-,AluSc,SINE,Alu,-15,294,80,141514674,141514984 -3 - chrX 141649045 141649151 chrX,141649045,141649151,-,MER81,DNA,hAT-Blackjack,-7,107,1,141649038,141649151 -6 - chrX 143359591 143359676 chrX,143359399,143359705,+,L2a,LINE,L2,3120,3419,-7,143356280,143359712 +3 + chrX 143387682 143387773 chrX,143387464,143387851,+,MSTA,LTR,ERVL-MaLR,1,428,0,143387464,143387851 +3 + chrX 143509609 143509737 chrX,143509350,143509889,+,LTR46,LTR,ERV1,1,460,0,143509350,143509889 +3 + chrX 143510128 143510191 chrX,143509890,143516858,+,LTR46-int,LTR,ERV1,2,6985,0,143509889,143516858 +5 + chrX 143516642 143516803 chrX,143509890,143516858,+,LTR46-int,LTR,ERV1,2,6985,0,143509889,143516858 +5 + chrX 143757737 143757760 chrX,143757461,143757760,-,LTR12D,LTR,ERV1,-952,302,1,143756509,143757760 -1 - chrX 143828017 143828133 chrX,143827662,143829988,+,Tigger1,DNA,TcMar-Tigger,1,2418,0,143827662,143829988 +5 + chrX 145233577 145233619 chrX,145233577,145233905,-,L1M5,LINE,L1,-1372,4774,4445,145232205,145238349 +1 - chrX 145797838 145798015 chrX,145797838,145798015,+,MIR,SINE,MIR,79,268,0,145797760,145798015 +6 + chrX 147900178 147900299 chrX,147900171,147900482,-,AluJr,SINE,Alu,-2,310,17,147900169,147900498 +5 - chrX 147909451 147909595 chrX,147909451,147909595,-,L2c,LINE,L2,0,3387,3243,147909451,147912837 +6 - chrX 147909604 147909662 chrX,147909604,147909662,-,MIR,SINE,MIR,-1,267,214,147909603,147909875 +6 - chrX 147909830 147909958 chrX,147909830,147909958,+,L1ME5,LINE,L1,5819,5953,-241,147904012,147910199 -6 + chrX 147910020 147910154 chrX,147910020,147910154,+,L1ME5,LINE,L1,6039,6176,-18,147903982,147910172 -6 + chrX 147910754 147910961 chrX,147910754,147910961,+,L2b,LINE,L2,3227,3400,-26,147907528,147910987 -6 + chrX 147911522 147911561 chrX,147911522,147911561,+,(ACCAA)n,Simple_repeat,Simple_repeat,1,39,0,147911522,147911561 -6 + chrX 147947129 147947179 chrX,147947129,147947427,+,AluSq2,SINE,Alu,1,298,-15,147947129,147947442 +4 + chrX 147947480 147947583 chrX,147947428,147947724,+,AluY,SINE,Alu,1,298,-13,147947428,147947737 +5 + chrX 148498378 148498422 chrX,148498378,148498425,+,(TGC)n,Simple_repeat,Simple_repeat,1,47,0,148498378,148498425 -2 + chrX 148500601 148500615 chrX,148500601,148500743,+,(GCC)n,Simple_repeat,Simple_repeat,1,182,-37,148500601,148500780 -1 + chrX 148546934 148547101 chrX,148546934,148547101,-,L2c,LINE,L2,-19,3368,3181,148546915,148550281 -6 - chrX 149528208 149528358 chrX,149528208,149528390,+,L1MDa,LINE,L1,13,200,-6433,149528196,149534823 -2 + chrX 149529209 149529229 chrX,149528921,149530125,+,L1MDa,LINE,L1,309,1726,-4907,149528613,149535032 -3 + chrX 149529367 149529428 chrX,149528921,149530125,+,L1MDa,LINE,L1,309,1726,-4907,149528613,149535032 -3 + chrX 149529513 149529593 chrX,149528921,149530125,+,L1MDa,LINE,L1,309,1726,-4907,149528613,149535032 -3 + chrX 149533296 149533474 chrX,149533271,149533474,+,ERV3-16A3_LTR,LTR,ERVL,205,422,0,149533067,149533474 -5 + chrX 149533761 149534222 chrX,149533761,149534222,+,HERV16-int,LTR,ERVL,274,749,-4477,149533488,149538699 -5 + chrX 149534222 149534304 chrX,149534222,149534304,-,MER81,DNA,hAT-Blackjack,0,114,8,149534222,149534311 +5 - chrX 149534307 149534428 chrX,149534307,149534463,+,HERV16-int,LTR,ERVL,738,896,-4330,149533570,149538793 -1 + chrX 149535936 149535961 chrX,149534908,149535961,+,(TCC)n,Simple_repeat,Simple_repeat,1,1119,0,149534908,149535961 -5 + chrX 149536202 149536255 chrX,149536202,149536408,+,L1M5,LINE,L1,5173,5391,-851,149531030,149537259 -2 + chrX 149540695 149540726 chrX,149540681,149540726,+,(CCCTTC)n,Simple_repeat,Simple_repeat,1,45,0,149540681,149540726 -4 + chrX 149879266 149879358 chrX,149879155,149879781,+,L1M5,LINE,L1,3906,4573,-1573,149875250,149881354 -3 + chrX 149879806 149879858 chrX,149879806,149880057,+,L1MEh,LINE,L1,17,254,-1981,149879790,149882038 -2 + chrX 149938719 149938778 chrX,149938719,149938778,+,GA-rich,Low_complexity,Low_complexity,1,57,0,149938719,149938778 +6 + chrX 149943651 149943762 chrX,149943618,149943916,-,AluSp,SINE,Alu,-1,312,2,149943617,149943917 -3 - chrX 149945633 149945746 chrX,149945357,149945746,-,HERV16-int,LTR,ERVL,-3619,1377,978,149941738,149946723 -1 - chrX 149945927 149946009 chrX,149945927,149946009,+,MER81,DNA,hAT-Blackjack,8,114,0,149945920,149946009 +1 + chrX 149946009 149946754 chrX,149946009,149946754,-,HERV16-int,LTR,ERVL,-4477,749,1,149941532,149946754 -1 - chrX 149946754 149946957 chrX,149946754,149946957,-,ERV3-16A3_LTR,LTR,ERVL,0,422,205,149946754,149947161 -5 - chrX 149946977 149947028 chrX,149946977,149947028,+,L2c,LINE,L2,3377,3426,0,149943601,149947028 +6 + chrX 149947419 149947571 chrX,149947419,149947571,-,L2c,LINE,L2,-197,3190,3032,149947222,149950602 -6 - chrX 149948321 149948394 chrX,149948321,149948464,-,MIRc,SINE,MIR,-110,158,9,149948211,149948472 -4 - chrX 149952350 149952626 chrX,149952333,149952626,-,AluJr,SINE,Alu,-21,291,1,149952312,149952626 -2 - chrX 149952632 149953052 chrX,149952632,149953260,-,L1ME3A,LINE,L1,-10,6163,5485,149952622,149958744 -5 - chrX 150223992 150224113 chrX,150223940,150224154,+,MIRb,SINE,MIR,33,251,-17,150223908,150224171 +3 + chrX 150224341 150224580 chrX,150224229,150224701,-,MLT1D,LTR,ERVL-MaLR,0,505,1,150224229,150224701 -5 - chrX 150915813 150915836 chrX,150915584,150915908,+,MLT1A,LTR,ERVL-MaLR,60,374,0,150915525,150915908 +1 + chrX 150917113 150917283 chrX,150916945,150917361,+,MSTC,LTR,ERVL-MaLR,1,426,-2,150916945,150917363 +1 + chrX 150920857 150920938 chrX,150920857,150921406,+,L1MB7,LINE,L1,5600,6137,-47,150915258,150921453 +5 + chrX 151177574 151177623 chrX,151177574,151177623,+,(GCG)n,Simple_repeat,Simple_repeat,1,50,0,151177574,151177623 -6 + chrX 151497726 151497736 chrX,151497700,151497736,+,(ACAAA)n,Simple_repeat,Simple_repeat,1,36,0,151497700,151497736 +1 + chrX 151907350 151907399 chrX,151907350,151907785,-,MLT1A,LTR,ERVL-MaLR,0,374,3,151907350,151907787 +2 - chrX 151909607 151909823 chrX,151909607,151909833,+,L1MC3,LINE,L1,9069,9292,-12,151900539,151909845 -2 + chrX 151911097 151911125 chrX,151911097,151911125,+,GA-rich,Low_complexity,Low_complexity,1,29,0,151911097,151911125 -6 + chrX 152128341 152128357 chrX,152128309,152128787,-,L1MC3,LINE,L1,-3021,3125,2655,152125288,152131441 +5 - chrX 152164197 152164305 chrX,152164175,152164305,-,FRAM,SINE,Alu,-12,164,33,152164163,152164337 -2 - chrX 152164344 152164588 chrX,152164344,152164605,+,MLT1G,LTR,ERVL-MaLR,66,379,-212,152164279,152164817 +4 + chrX 152186808 152186857 chrX,152186626,152186875,-,AluJb,SINE,Alu,-15,297,48,152186611,152186922 -5 - chrX 152746817 152747012 chrX,152746655,152747012,-,MLT1I,LTR,ERVL-MaLR,-1,443,33,152746654,152747044 -1 - chrX 153229679 153229953 chrX,153229679,153229953,+,L2,LINE,L2,1261,1562,-1857,153228419,153231810 +5 + chrX 153230091 153230128 chrX,153230091,153230128,+,A-rich,Low_complexity,Low_complexity,1,37,0,153230091,153230128 +6 + chrX 153230310 153230357 chrX,153230310,153230397,-,L1ME1,LINE,L1,0,6179,6098,153230310,153236494 -5 - chrX 153425998 153426481 chrX,153425998,153426668,-,L1ME1,LINE,L1,0,6179,5501,153425998,153432168 -5 - chrX 153599825 153599881 chrX,153599825,153599881,+,L2c,LINE,L2,3327,3384,-3,153596499,153599884 +6 + chrX 153604126 153604353 chrX,153604072,153604444,-,MLT1C,LTR,ERVL-MaLR,-8,459,47,153604064,153604490 -5 - chrX 153735626 153735959 chrX,153734753,153736030,-,L1MB7,LINE,L1,-2,6182,4887,153734751,153740916 +5 - chrX 153738289 153738578 chrX,153738289,153738753,-,MLT1C,LTR,ERVL-MaLR,-3,464,1,153738286,153738753 +2 - chrX 153760491 153760613 chrX,153760489,153760800,-,AluSp,SINE,Alu,0,313,2,153760489,153760801 +5 - chrX 153766464 153766478 chrX,153766464,153766505,+,(CCTC)n,Simple_repeat,Simple_repeat,1,42,0,153766464,153766505 -1 + chrX 153885853 153885917 chrX,153885853,153885917,+,(GGCACCC)n,Simple_repeat,Simple_repeat,1,67,0,153885853,153885917 +6 + chrX 153888637 153888757 chrX,153888637,153888757,-,L1MEd,LINE,L1,-3851,2295,2176,153884786,153890932 -6 - chrX 153888768 153888990 chrX,153888768,153888990,+,AluJr,SINE,Alu,78,301,-11,153888691,153889001 +5 + chrX 154334233 154334274 chrX,154334233,154334314,-,L1MEd,LINE,L1,-6056,1030,949,154328177,154335262 +2 - chrX 154396878 154397017 chrX,154396712,154397017,-,AluSx1,SINE,Alu,-5,307,1,154396707,154397017 +5 - chrX 154397017 154397153 chrX,154397017,154397153,-,AluSz,SINE,Alu,-186,126,1,154396831,154397153 +6 - chrX 154397197 154397347 chrX,154397197,154397347,+,HERV16-int,LTR,ERVL,1733,1885,-3111,154395465,154400458 -6 + chrX 154397617 154397718 chrX,154397617,154397718,+,G-rich,Low_complexity,Low_complexity,1,103,0,154397617,154397718 -6 + chrX 154424380 154424625 chrX,154424335,154424713,-,MLT1C,LTR,ERVL-MaLR,-1,466,87,154424334,154424799 +5 - chrX 154428128 154428202 chrX,154428128,154428202,-,LTR67B,LTR,ERVL,0,620,544,154428128,154428745 +4 - chrX 154428205 154428336 chrX,154428205,154428336,+,FLAM_A,SINE,Alu,1,132,-10,154428205,154428346 -6 + chrX 154428347 154428387 chrX,154428347,154428387,+,A-rich,Low_complexity,Low_complexity,1,41,0,154428347,154428387 -6 + chrX 154477032 154477287 chrX,154476660,154477287,+,L1MEc,LINE,L1,56,717,-5683,154476605,154482970 +1 + chrX 154477567 154477670 chrX,154477567,154477670,+,L1ME4a,LINE,L1,5972,6076,-48,154471596,154477718 +6 + chrX 154518553 154518631 chrX,154518553,154518672,-,L1MB4,LINE,L1,0,6180,6061,154518553,154524732 +1 - chrX 154571250 154571369 chrX,154571250,154571369,-,AluJo,SINE,Alu,-186,126,9,154571064,154571377 -6 - chrX 154571509 154571622 chrX,154571509,154571622,+,MIRb,SINE,MIR,107,227,-41,154571403,154571663 +6 + chrX 154571737 154571960 chrX,154571737,154571960,+,L1MB7,LINE,L1,5960,6184,0,154565778,154571960 +5 + chrX 154632470 154632692 chrX,154632469,154632692,-,L1MB7,LINE,L1,0,6184,5960,154632469,154638651 +5 - chrX 154632807 154632920 chrX,154632807,154632920,-,MIRb,SINE,MIR,-41,227,107,154632766,154633026 +6 - chrX 154633060 154633182 chrX,154633060,154633216,+,FLAM_C,SINE,Alu,9,143,0,154633052,154633216 -1 + chrX 155347137 155347668 chrX,155347083,155347668,+,L1ME3A,LINE,L1,5566,6164,-9,155341518,155347677 -5 + chrX 155347706 155348285 chrX,155347706,155348285,+,L2a,LINE,L2,2840,3424,-2,155344867,155348287 -6 + chrX 155466540 155466849 chrX,155466218,155467132,-,L1MD2,LINE,L1,-5560,987,27,155460658,155467158 -1 - chrX 155468286 155468374 chrX,155467274,155468528,-,HAL1b,LINE,L1,-1021,1400,95,155466253,155468622 -1 - chrX 155486583 155487046 chrX,155481357,155487841,-,L1PA13,LINE,L1,0,7598,1,155481357,155487841 -5 - chrX 155492961 155493540 chrX,155492961,155493540,-,L2a,LINE,L2,-2,3424,2840,155492959,155496379 -6 - chrX 155493578 155494110 chrX,155493578,155494163,-,L1ME3A,LINE,L1,-9,6164,5566,155493569,155499728 -5 - chrX 156014669 156014750 chrX,156014669,156014750,-,Kanga1c,DNA,TcMar-Tc2,-4,725,639,156014665,156015388 +6 - chrX 156014810 156014884 chrX,156014810,156014884,-,AluJo,SINE,Alu,0,312,240,156014810,156015123 +6 - chrX 156014967 156015272 chrX,156014967,156015272,+,AluSp,SINE,Alu,1,306,-7,156014967,156015279 -6 + chrY 321092 321248 chrY,321092,321279,+,AluJo,SINE,Alu,39,217,-95,321054,321374 +4 + chrY 321683 321851 chrY,321632,321925,+,AluJo,SINE,Alu,2,312,0,321631,321925 +5 + chrY 990221 990427 chrY,990175,990498,+,LTR9,LTR,ERV1,174,524,-120,990002,990618 +1 + chrY 1397025 1397154 chrY,1396812,1397154,-,AluSz,SINE,Alu,-8,304,1,1396804,1397154 -1 - chrY 1413081 1413131 chrY,1413081,1413344,+,AluSq2,SINE,Alu,2,265,-48,1413080,1413392 +5 + chrY 1413749 1413915 chrY,1413592,1413915,+,MLT1C,LTR,ERVL-MaLR,11,348,-119,1413582,1414034 +5 + chrY 1413926 1414028 chrY,1413926,1414302,+,MLT1C,LTR,ERVL-MaLR,5,404,-63,1413922,1414365 +5 + chrY 1732584 1732630 chrY,1732493,1732630,-,AluSx1,SINE,Alu,-179,133,1,1732314,1732630 -1 - chrY 1733950 1734065 chrY,1733752,1734065,-,AluSx1,SINE,Alu,-4,308,1,1733748,1734065 -2 - chrY 1768435 1768475 chrY,1768413,1768475,-,FRAM,SINE,Alu,-10,166,105,1768403,1768579 -2 - chrY 1768551 1768719 chrY,1768551,1768719,-,AluJb,SINE,Alu,-9,303,131,1768542,1768849 -6 - chrY 1768719 1768776 chrY,1768719,1769029,-,AluSc,SINE,Alu,0,309,1,1768719,1769029 -5 - chrY 2334295 2334452 chrY,2334170,2334452,-,AluSx1,SINE,Alu,-19,293,1,2334151,2334452 +5 - chrY 2334457 2334733 chrY,2334457,2334733,-,AluJo,SINE,Alu,-18,294,17,2334439,2334749 +6 - chrY 2334849 2334899 chrY,2334849,2334899,-,MER4A1,LTR,ERV1,0,472,428,2334849,2335326 +6 - chrY 2334899 2334919 chrY,2334899,2335205,+,AluSx1,SINE,Alu,3,303,-9,2334897,2335214 -2 + chrY 2613258 2613567 chrY,2613258,2613567,-,AluSz6,SINE,Alu,-2,310,1,2613256,2613567 +6 - chrY 2614851 2614893 chrY,2614851,2614893,+,(TCTC)n,Simple_repeat,Simple_repeat,1,42,0,2614851,2614893 -6 + chrY 2615262 2615306 chrY,2615262,2615306,+,(TTG)n,Simple_repeat,Simple_repeat,1,46,0,2615262,2615306 -6 + chrY 2934760 2934771 chrY,2934760,2934779,+,(T)n,Simple_repeat,Simple_repeat,1,19,0,2934760,2934779 -1 + chrY 2966844 2966903 chrY,2966828,2966903,-,AluYh7,SINE,Alu,-15,296,222,2966813,2967124 +5 - chrY 2966908 2966939 chrY,2966908,2967450,+,L1MB7,LINE,L1,6055,6625,-57,2960854,2967507 -2 + chrY 3001628 3001923 chrY,3001139,3002100,+,L1MB2,LINE,L1,5121,6163,-8,2996019,3002108 -5 + chrY 3002912 3002992 chrY,3002436,3002992,+,LTR4,LTR,ERV1,1,596,0,3002436,3002992 +1 + chrY 3002436 3002626 chrY,3002436,3002992,+,LTR4,LTR,ERV1,1,596,0,3002436,3002992 -1 + chrY 3002992 3003217 chrY,3002992,3005218,+,HERV3-int,LTR,ERV1,2,2302,-6124,3002991,3011342 +1 + chrY 3079284 3079341 chrY,3079022,3079422,+,MSTD,LTR,ERVL-MaLR,3,396,0,3079020,3079422 +3 + chrY 3102085 3102183 chrY,3102074,3102183,-,L1M5,LINE,L1,-477,5647,5534,3101597,3107716 -2 - chrY 3102202 3102272 chrY,3102202,3102280,+,(ATTTAT)n,Simple_repeat,Simple_repeat,1,83,0,3102202,3102280 +5 + chrY 4036497 4036630 chrY,4036436,4036630,-,PABL_B,LTR,ERV1,0,667,467,4036436,4037096 -1 - chrY 4036708 4036720 chrY,4036708,4036876,-,PABL_B,LTR,ERV1,-498,169,1,4036210,4036876 -4 - chrY 4099986 4100298 chrY,4098934,4100298,+,LTR12C,LTR,ERV1,3,1579,0,4098932,4100298 +2 + chrY 4997507 4997561 chrY,4997370,4997561,+,MIRb,SINE,MIR,3,222,-46,4997368,4997607 -4 + chrY 4999514 4999552 chrY,4999514,4999552,+,(CA)n,Simple_repeat,Simple_repeat,1,38,0,4999514,4999552 -6 + chrY 6358684 6358734 chrY,6358432,6358734,-,AluSz6,SINE,Alu,-10,302,1,6358422,6358734 +4 - chrY 6412223 6412296 chrY,6411915,6412296,-,SST1,Satellite,centr,-25,1538,1156,6411890,6413451 +4 - chrY 6423065 6423156 chrY,6423065,6423156,+,(AC)n,Simple_repeat,Simple_repeat,1,93,0,6423065,6423156 -6 + chrY 6424031 6424145 chrY,6424031,6424423,-,SST1,Satellite,centr,-961,602,207,6423070,6424629 +1 - chrY 6470773 6470806 chrY,6470772,6470806,+,(TTAA)n,Simple_repeat,Simple_repeat,1,34,0,6470772,6470806 -5 + chrY 6471073 6471107 chrY,6471073,6471107,+,(AC)n,Simple_repeat,Simple_repeat,1,34,0,6471073,6471107 -6 + chrY 6918682 6918707 chrY,6918403,6918707,-,AluJo,SINE,Alu,-7,305,12,6918396,6918718 -1 - chrY 6918870 6919181 chrY,6918870,6919181,-,AluSg,SINE,Alu,-13,297,2,6918857,6919182 -6 - chrY 6919445 6919944 chrY,6919445,6919944,+,LTR10B,LTR,ERV1,1,505,0,6919445,6919944 +6 + chrY 7804924 7805079 chrY,7804900,7805157,+,BSR/Beta,Satellite,Satellite,1,255,-4,7804900,7805161 +1 + chrY 7809861 7810491 chrY,7808949,7810491,+,BSR/Beta,Satellite,Satellite,1,1552,-44,7808949,7810535 +2 + chrY 7810534 7810683 chrY,7810534,7812029,+,BSR/Beta,Satellite,Satellite,1,1456,-49,7810534,7812078 +5 + chrY 8644201 8644327 chrY,8644201,8644658,+,SST1,Satellite,centr,138,601,-962,8644064,8645620 +4 + chrY 8783310 8783371 chrY,8783242,8783371,-,L1P3,LINE,L1,-2558,3588,3464,8780684,8786834 +5 - chrY 8784164 8784203 chrY,8784164,8784622,-,L1M3b,LINE,L1,-5771,510,42,8778393,8784663 +2 - chrY 8794861 8794886 chrY,8794758,8794886,-,X7B_LINE,LINE,CR1,0,250,104,8794758,8794989 +4 - chrY 9458613 9458802 chrY,9458534,9458841,+,AluSx,SINE,Alu,1,312,0,9458534,9458841 -5 + chrY 9462422 9462516 chrY,9462422,9462530,+,AluSx4,SINE,Alu,183,291,-19,9462240,9462549 -2 + chrY 9465793 9465897 chrY,9465793,9465897,+,(CCTCCA)n,Simple_repeat,Simple_repeat,1,105,0,9465793,9465897 -6 + chrY 9693622 9693656 chrY,9693622,9693656,+,(GT)n,Simple_repeat,Simple_repeat,1,34,0,9693622,9693656 +6 + chrY 9693922 9693957 chrY,9693922,9693957,+,A-rich,Low_complexity,Low_complexity,1,35,0,9693922,9693957 +5 + chrY 9740584 9740697 chrY,9740305,9740697,+,SST1,Satellite,centr,207,602,-961,9740099,9741658 +1 + chrY 9741572 9741663 chrY,9741572,9741663,+,(TG)n,Simple_repeat,Simple_repeat,1,93,0,9741572,9741663 +6 + chrY 9752423 9752497 chrY,9752423,9752804,+,SST1,Satellite,centr,1156,1538,-25,9751268,9752829 +4 + chrY 9801272 9801307 chrY,9801272,9801439,+,SST1,Satellite,centr,1374,1552,-11,9799899,9801450 +4 + chrY 9815993 9816044 chrY,9815993,9816295,+,AluSz6,SINE,Alu,1,302,-10,9815993,9816305 +4 + chrY 12662334 12662350 chrY,12662322,12662350,+,(T)n,Simple_repeat,Simple_repeat,1,28,0,12662322,12662350 +1 + chrY 12686513 12686606 chrY,12685409,12686624,+,MER4-int,LTR,ERV1,4473,5714,-884,12680937,12687508 +3 + chrY 12687464 12687822 chrY,12686918,12687822,+,MER4-int,LTR,ERV1,5715,6580,-18,12681204,12687840 +2 + chrY 12687822 12687854 chrY,12687822,12687854,-,MER4A,LTR,ERV1,-332,332,303,12687490,12688156 -6 - chrY 12687854 12688304 chrY,12687854,12688304,+,MER4A1,LTR,ERV1,1,469,-3,12687854,12688307 +5 + chrY 12688304 12688540 chrY,12688304,12688540,-,MER4A,LTR,ERV1,-362,302,1,12687942,12688540 -6 - chrY 12688763 12689030 chrY,12688763,12689030,-,AluJr4,SINE,Alu,-24,288,24,12688739,12689053 -6 - chrY 12689115 12689210 chrY,12689115,12689210,-,FLAM_C,SINE,Alu,-17,126,31,12689098,12689240 -6 - chrY 12689551 12689657 chrY,12689551,12689657,-,L1M5,LINE,L1,-317,5807,5698,12689234,12695354 -6 - chrY 12689885 12690182 chrY,12689885,12690182,+,AluSc,SINE,Alu,1,292,-17,12689885,12690199 +6 + chrY 12690708 12690963 chrY,12690708,12690963,-,MSTA,LTR,ERVL-MaLR,-7,421,184,12690701,12691146 -6 - chrY 12690963 12691262 chrY,12690963,12691262,+,AluSx,SINE,Alu,2,297,-15,12690962,12691277 +6 + chrY 12691262 12691456 chrY,12691262,12691456,-,MSTA,LTR,ERVL-MaLR,-245,183,1,12691017,12691456 -6 - chrY 12691456 12691838 chrY,12691456,12691838,-,MLT1F2,LTR,ERVL-MaLR,-26,534,140,12691430,12691977 -6 - chrY 12691952 12692090 chrY,12691952,12692090,+,Tigger8,DNA,TcMar-Tigger,520,667,0,12691433,12692090 +6 + chrY 14276212 14276435 chrY,14276165,14276435,+,AluSx4,SINE,Alu,1,288,-22,14276165,14276457 -5 + chrY 14276536 14276565 chrY,14276536,14276565,+,(TG)n,Simple_repeat,Simple_repeat,1,30,0,14276536,14276565 -6 + chrY 14793697 14793987 chrY,14793697,14794015,+,AluYj4,SINE,Alu,2,306,-5,14793696,14794020 -2 + chrY 14798622 14798684 chrY,14798410,14798684,-,L1MEh,LINE,L1,-1131,1104,829,14797279,14799512 +4 - chrY 14801276 14801344 chrY,14801194,14801371,-,THE1C,LTR,ERVL-MaLR,0,375,197,14801194,14801567 +3 - chrY 14804005 14804033 chrY,14803915,14804050,+,L2b,LINE,L2,2595,2734,-685,14801321,14804735 -1 + chrY 17501092 17501115 chrY,17501092,17501259,+,MIRb,SINE,MIR,33,212,-56,17501060,17501315 +4 + chrY 17501711 17501760 chrY,17501629,17501852,-,MLT1A0,LTR,ERVL-MaLR,0,365,146,17501629,17501997 -3 - chrY 17552800 17552842 chrY,17551946,17552842,+,MER57A-int,LTR,ERV1,1498,2431,-3756,17550449,17556598 -5 + chrY 17552842 17553110 chrY,17552842,17553110,-,AluSz,SINE,Alu,-27,285,18,17552815,17553127 +6 - chrY 17553110 17553330 chrY,17553110,17553330,+,MER57A-int,LTR,ERV1,2432,2663,-3524,17550679,17556854 -6 + chrY 17553357 17553899 chrY,17553357,17553899,+,MER57A-int,LTR,ERV1,3307,3880,-2307,17550051,17556206 -6 + chrY 17553917 17553954 chrY,17553917,17557069,+,L1M1,LINE,L1,26,3191,-4374,17553892,17561443 -2 + chrY 17554042 17554126 chrY,17553917,17557069,+,L1M1,LINE,L1,26,3191,-4374,17553892,17561443 -3 + chrY 17555776 17556010 chrY,17553917,17557069,+,L1M1,LINE,L1,26,3191,-4374,17553892,17561443 -3 + chrY 17576703 17576818 chrY,17576547,17576818,+,AluSg,SINE,Alu,1,279,-31,17576547,17576849 -4 + chrY 18326253 18326290 chrY,18326246,18326290,+,(CTCCTC)n,Simple_repeat,Simple_repeat,1,46,0,18326246,18326290 +1 + chrY 18329192 18329308 chrY,18329192,18329463,-,AluSg,SINE,Alu,-31,279,1,18329161,18329463 -4 - chrY 18351884 18351968 chrY,18349107,18352092,-,L1M1,LINE,L1,-4516,3049,26,18344591,18352117 -3 - chrY 18352056 18352092 chrY,18349107,18352092,-,L1M1,LINE,L1,-4516,3049,26,18344591,18352117 -2 - chrY 18350000 18350234 chrY,18349107,18352092,-,L1M1,LINE,L1,-4516,3049,26,18344591,18352117 -3 - chrY 18352110 18352652 chrY,18352110,18352652,-,MER57A-int,LTR,ERV1,-2307,3880,3307,18349803,18355958 -6 - chrY 18352679 18352899 chrY,18352679,18352899,-,MER57A-int,LTR,ERV1,-3524,2663,2432,18349155,18355330 -6 - chrY 18352899 18353167 chrY,18352899,18353167,+,AluSz,SINE,Alu,18,285,-27,18352882,18353194 +6 + chrY 18353167 18353210 chrY,18353167,18354063,-,MER57A-int,LTR,ERV1,-3756,2431,1498,18349411,18355560 -5 - chrY 18404244 18404293 chrY,18404151,18404374,+,MLT1A0,LTR,ERVL-MaLR,146,365,0,18404006,18404374 -3 + chrY 18404889 18404911 chrY,18404744,18404911,-,MIRb,SINE,MIR,-56,212,33,18404688,18404943 +4 - chrY 18491740 18491777 chrY,18491670,18491777,-,L2c,LINE,L2,-34,3353,3243,18491636,18495019 -1 - chrY 18530488 18530596 chrY,18530376,18530952,-,MER4B,LTR,ERV1,-45,721,25,18530331,18530976 -3 - chrY 18581449 18581824 chrY,18581449,18581824,-,MLT1A1,LTR,ERVL-MaLR,-2,406,3,18581447,18581826 +6 - chrY 18588131 18588224 chrY,18588054,18588224,-,MIR3,SINE,MIR,-4,204,8,18588050,18588231 +4 - chrY 18590380 18590521 chrY,18590232,18591401,-,HERV3-int,LTR,ERV1,-2120,6306,5095,18588112,18596495 +1 - chrY 18872542 18872834 chrY,18872542,18872886,-,MLT1A0,LTR,ERVL-MaLR,-2,363,19,18872540,18872904 +2 - chrY 18877068 18877094 chrY,18876991,18877094,+,MIRc,SINE,MIR,84,193,-69,18876908,18877163 -4 + chrY 18877409 18877726 chrY,18877409,18877726,-,AluJb,SINE,Alu,0,312,1,18877409,18877726 +6 - chrY 18932329 18932377 chrY,18932329,18932377,+,(TCATTCT)n,Simple_repeat,Simple_repeat,1,51,0,18932329,18932377 -6 + chrY 18932708 18932841 chrY,18932708,18932845,-,FLAM_A,SINE,Alu,-11,131,2,18932697,18932846 +2 - chrY 19041498 19041586 chrY,19041345,19041622,-,HERVIP10FH-int,LTR,ERV1,-4830,272,1,19036515,19041622 +5 - chrY 19045242 19045291 chrY,19044835,19045363,+,LTR10F,LTR,ERV1,9,511,0,19044827,19045363 -3 + chrY 19048811 19048912 chrY,19048811,19049103,-,L2a,LINE,L2,-22,3404,3103,19048789,19052205 +2 - chrY 19691941 19691982 chrY,19691937,19691982,+,A-rich,Low_complexity,Low_complexity,1,45,0,19691937,19691982 -5 + chrY 19691987 19692689 chrY,19691987,19692689,+,L1MA7,LINE,L1,1102,1826,-4558,19690886,19697247 -6 + chrY 19692708 19692755 chrY,19692708,19692755,+,A-rich,Low_complexity,Low_complexity,1,47,0,19692708,19692755 -6 + chrY 19693098 19693256 chrY,19693098,19693256,+,L1MA7,LINE,L1,2401,2544,-3832,19690698,19697088 -6 + chrY 19693318 19693655 chrY,19693318,19693655,+,L1MA7,LINE,L1,2518,2910,-3466,19690801,19697121 -6 + chrY 19693777 19694367 chrY,19693777,19694367,+,L1MA7,LINE,L1,3193,3808,-2571,19690585,19696938 -6 + chrY 19694367 19694606 chrY,19694367,19695116,-,LTR17,LTR,ERV1,-1,779,1,19694366,19695116 +1 - chrY 20465668 20465822 chrY,20465356,20465954,-,LTR19C,LTR,ERV1,0,779,172,20465356,20466125 +5 - chrY 20466428 20466667 chrY,20465956,20466771,-,HUERS-P3-int,LTR,ERV1,-5476,3443,2637,20460480,20469407 +3 - chrY 20468189 20468248 chrY,20467574,20468257,+,LTR12_,LTR,ERV1,2,688,0,20467573,20468257 -3 + chrY 20469921 20469959 chrY,20469921,20469959,+,(ACTTTAT)n,Simple_repeat,Simple_repeat,1,39,0,20469921,20469959 -6 + chrY 21038289 21039044 chrY,21038214,21044744,-,HERVH-int,LTR,ERV1,-1648,6065,1,21036566,21044744 +1 - chrY 21042269 21042369 chrY,21038214,21044744,-,HERVH-int,LTR,ERV1,-1648,6065,1,21036566,21044744 +1 - chrY 21044599 21044724 chrY,21038214,21044744,-,HERVH-int,LTR,ERV1,-1648,6065,1,21036566,21044744 +1 - chrY 21583600 21583662 chrY,21583324,21585319,+,HERVK14C-int,LTR,ERVK,5306,7310,-124,21578019,21585443 -5 + chrY 21584783 21584874 chrY,21583324,21585319,+,HERVK14C-int,LTR,ERVK,5306,7310,-124,21578019,21585443 -5 + chrY 21589272 21589370 chrY,21589178,21589550,+,SST1,Satellite,centr,1163,1536,-27,21588016,21589577 -3 + chrY 22102885 22103002 chrY,22102728,22103022,+,AluY,SINE,Alu,1,294,-17,22102728,22103039 -3 + chrY 22105750 22106003 chrY,22105683,22106003,-,SST1,Satellite,centr,-76,1487,1163,22105607,22107165 +1 - chrY 22121284 22121318 chrY,22121152,22121318,-,SST1,Satellite,centr,-9,1554,1374,22121143,22122691 +4 - chrY 22121482 22121552 chrY,22121482,22121552,-,SST1,Satellite,centr,-346,1217,1148,22121136,22122699 +6 - chrY 22139950 22139974 chrY,22139829,22139974,-,SST1,Satellite,centr,-25,1538,1388,22139804,22141361 +4 - chrY 22147284 22147318 chrY,22147153,22147318,-,SST1,Satellite,centr,-11,1552,1374,22147142,22148691 +4 - chrY 22298652 22298688 chrY,22298652,22298688,+,(TATT)n,Simple_repeat,Simple_repeat,1,36,0,22298652,22298688 -6 + chrY 22439105 22439140 chrY,22439105,22439270,+,SST1,Satellite,centr,1374,1552,-11,22437732,22439281 +4 + chrY 22446447 22446472 chrY,22446447,22446592,+,SST1,Satellite,centr,1388,1538,-25,22445060,22446617 +4 + chrY 22464863 22464933 chrY,22464863,22464933,+,SST1,Satellite,centr,1148,1217,-346,22463716,22465279 +6 + chrY 22465097 22465132 chrY,22465097,22465263,+,SST1,Satellite,centr,1374,1554,-9,22463724,22465272 +4 + chrY 22480402 22480656 chrY,22480402,22480722,+,SST1,Satellite,centr,1163,1487,-76,22479240,22480798 +1 + chrY 22483404 22483521 chrY,22483383,22483677,-,AluY,SINE,Alu,-17,294,1,22483366,22483677 -3 - chrY 22936455 22936476 chrY,22935915,22936476,+,LTR22,LTR,ERVK,1,567,-4,22935915,22936480 +1 + chrY 22936514 22936615 chrY,22936514,22936802,+,HERVK22-int,LTR,ERVK,9,277,-6560,22936506,22943362 +4 + chrY 22963628 22963703 chrY,22963011,22964353,-,BSR/Beta,Satellite,Satellite,0,1335,1,22963011,22964353 -3 - chrY 22965508 22965615 chrY,22964472,22966189,-,BSR/Beta,Satellite,Satellite,-12,1736,1,22964460,22966189 -3 - chrY 22972284 22973186 chrY,22971692,22973186,-,BSR/Beta,Satellite,Satellite,-37,1494,1,22971655,22973186 -2 - chrY 24570202 24570223 chrY,24569662,24570223,+,LTR22,LTR,ERVK,1,567,-4,24569662,24570227 +1 + chrY 24570261 24570362 chrY,24570261,24570549,+,HERVK22-int,LTR,ERVK,9,277,-6560,24570253,24577109 +4 + chrY 24597369 24597444 chrY,24596752,24598094,-,BSR/Beta,Satellite,Satellite,0,1334,1,24596752,24598094 -3 - chrY 24599249 24599356 chrY,24598213,24599930,-,BSR/Beta,Satellite,Satellite,-12,1736,1,24598201,24599930 -3 - chrY 24606025 24606927 chrY,24605433,24606927,-,BSR/Beta,Satellite,Satellite,-37,1494,1,24605396,24606927 -2 - chrY 25063180 25064083 chrY,25063180,25064674,+,BSR/Beta,Satellite,Satellite,1,1480,-49,25063180,25064723 -2 + chrY 25070734 25070841 chrY,25070177,25071876,+,BSR/Beta,Satellite,Satellite,1,1717,-44,25070177,25071920 -3 + chrY 25072646 25072721 chrY,25071995,25073249,+,BSR/Beta,Satellite,Satellite,1,1230,-14,25071995,25073263 -3 + chrY 25099732 25099832 chrY,25099544,25099832,-,HERVK22-int,LTR,ERVK,-6560,277,9,25092984,25099840 +4 - chrY 25099870 25099892 chrY,25099870,25100431,-,LTR22,LTR,ERVK,-4,567,1,25099866,25100431 +1 - chrY 25394626 25394719 chrY,25394491,25394770,+,AluJr4,SINE,Alu,5,283,-29,25394487,25394799 -1 + chrY 25728490 25728593 chrY,25728109,25729210,-,MER21-int,LTR,ERVL,-1011,3180,2054,25727098,25731263 -1 - chrY 25730792 25730893 chrY,25730781,25730893,-,L2c,LINE,L2,-38,3349,3234,25730743,25734126 -2 - chrY 57201330 57201404 chrY,57201330,57201404,-,AluJo,SINE,Alu,0,312,240,57201330,57201643 +6 - chrY 57201487 57201792 chrY,57201487,57201792,+,AluSp,SINE,Alu,1,306,-7,57201487,57201799 -6 +