# A simple example
# Data selected from ../pamfile1/pam450/seqfile 
# 

1> Using TreeDM to output the patterns file(ppfile) and distance matrix file(DM.txt)

 [path]/TreeDM -n 2 -s 0.03 -m 2 -i ../pamfile1/pam450/seqfile

we can output the ppfile and DM.txt

pattern vecters can output as binary_vector.txt and pattern_vector.txt

using [path]/neighbor to output the outtree and newicktree
