Sample ID,BioProject,Assay Type,Experiment,Run,Library Type,Library Source,Species,Platform,Geo. Population,Inferred Population,Study
San_Diego_1_14,PRJNA245906,WGS,SRX547024,SRR1292223,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
San_Joaquin_Valley_11,PRJNA245906,WGS,SRX547023,SRR1292222,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Joaquin_Valley_2,PRJNA245906,WGS,SRX547019,SRR1292218,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Joaquin_Valley_5,PRJNA245906,WGS,SRX547020,SRR1292219,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Joaquin_Valley_6,PRJNA245906,WGS,SRX547021,SRR1292220,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Joaquin_Valley_9,PRJNA245906,WGS,SRX547022,SRR1292221,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Diego_1_16,PRJNA274372,WGS,SRX1737469,SRR3468019,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_1,PRJNA274372,WGS,SRX1737465,SRR3468015,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_10,PRJNA274372,WGS,SRX1737531,SRR3468081,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_11,PRJNA274372,WGS,SRX1737467,SRR3468017,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_2,PRJNA274372,WGS,SRX1737466,SRR3468016,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_3,PRJNA274372,WGS,SRX1737477,SRR3468027,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_4,PRJNA274372,WGS,SRX1737488,SRR3468038,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_5,PRJNA274372,WGS,SRX1737499,SRR3468049,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_6,PRJNA274372,WGS,SRX1737510,SRR3468060,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_7,PRJNA274372,WGS,SRX1737521,SRR3468071,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_8,PRJNA274372,WGS,SRX1737529,SRR3468079,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
SJV_9,PRJNA274372,WGS,SRX1737530,SRR3468080,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,CA,CA,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
B0727_Argentina,PRJNA274372,WGS,SRX1737472,SRR3468022,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,LAm,LAm,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Coahuila_1,PRJNA274372,WGS,SRX1737471,SRR3468021,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,LAm,LAm,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Guerrero_1,PRJNA274372,WGS,SRX1737468,SRR3468018,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,LAm,LAm,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Michoacan_2,PRJNA274372,WGS,SRX1737470,SRR3468020,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,LAm,LAm,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
WA_202,PRJNA245906,WGS,SRX547026,SRR1292225,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,WA,WA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
WA_205,PRJNA245906,WGS,SRX547027,SRR1292226,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,WA,WA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
WA_211,PRJNA245906,WGS,SRX547028,SRR1292227,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,WA,WA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
WA_212,PRJNA245906,WGS,SRX547029,SRR1292228,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,WA,WA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
Washington_1,PRJNA245906,WGS,SRX547025,SRR1292224,PAIRED,GENOMIC,Coccidioides immitis,ILLUMINA,WA,WA,"Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, et al. Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection. Clin Infect Dis. Oxford University Press; 2015;60: e1–e3. doi:10.1093/cid/ciu681"
B10757_Nevada,PRJNA274372,WGS,SRX1737518,SRR3468068,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,CO/NV,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Colorado_Springs_1,PRJNA274372,WGS,SRX1737500,SRR3468050,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,CO/NV,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_1,PRJNA274372,WGS,SRX1737504,SRR3468054,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_2,PRJNA274372,WGS,SRX1737505,SRR3468055,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_3,PRJNA274372,WGS,SRX1737506,SRR3468056,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_4,PRJNA274372,WGS,SRX1737507,SRR3468057,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_5,PRJNA274372,WGS,SRX1737508,SRR3468058,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_6,PRJNA274372,WGS,SRX1737509,SRR3468059,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_7,PRJNA274372,WGS,SRX1737511,SRR3468061,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_8,PRJNA274372,WGS,SRX1737512,SRR3468062,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Phoenix_9,PRJNA274372,WGS,SRX1737513,SRR3468063,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Sonora_2,PRJNA274372,WGS,SRX1737502,SRR3468052,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_1,PRJNA274372,WGS,SRX1737473,SRR3468023,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_10,PRJNA274372,WGS,SRX1737483,SRR3468033,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_11,PRJNA274372,WGS,SRX1737484,SRR3468034,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_12,PRJNA274372,WGS,SRX1737485,SRR3468035,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_13,PRJNA274372,WGS,SRX1737486,SRR3468036,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_14,PRJNA274372,WGS,SRX1737487,SRR3468037,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_15,PRJNA274372,WGS,SRX1737489,SRR3468039,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_16,PRJNA274372,WGS,SRX1737490,SRR3468040,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_17,PRJNA274372,WGS,SRX1737491,SRR3468041,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_18,PRJNA274372,WGS,SRX1737492,SRR3468042,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_19,PRJNA274372,WGS,SRX1737493,SRR3468043,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_2,PRJNA274372,WGS,SRX1737474,SRR3468024,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_20,PRJNA274372,WGS,SRX1737494,SRR3468044,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_21,PRJNA274372,WGS,SRX1737495,SRR3468045,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_22,PRJNA274372,WGS,SRX1737496,SRR3468046,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_23,PRJNA274372,WGS,SRX1737497,SRR3468047,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_24,PRJNA274372,WGS,SRX1737523,SRR3468073,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_3,PRJNA274372,WGS,SRX1737475,SRR3468025,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_4,PRJNA274372,WGS,SRX1737476,SRR3468026,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_5,PRJNA274372,WGS,SRX1737478,SRR3468028,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_6,PRJNA274372,WGS,SRX1737479,SRR3468029,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_7,PRJNA274372,WGS,SRX1737480,SRR3468030,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_8,PRJNA274372,WGS,SRX1737481,SRR3468031,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Tucson_9,PRJNA274372,WGS,SRX1737482,SRR3468032,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,AZ,AZ,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
730332_Guatemala,PRJNA274372,WGS,SRX1737526,SRR3468076,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Guatemala,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
730333_Guatelama,PRJNA274372,WGS,SRX1737527,SRR3468077,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Guatemala,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
B0858_Guatemala,PRJNA274372,WGS,SRX1737517,SRR3468067,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Guatemala,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
B1249_Guatemala,PRJNA274372,WGS,SRX1737520,SRR3468070,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Guatemala,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
730334_Guatemala,PRJNA274372,WGS,SRX1737528,SRR3468078,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
B10813_Texas,PRJNA274372,WGS,SRX1737519,SRR3468069,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,TX,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
B5773_Brazil,PRJNA274372,WGS,SRX1737522,SRR3468072,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Coahuila_2,PRJNA274372,WGS,SRX1737503,SRR3468053,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
GT002_Texas,PRJNA274372,WGS,SRX1737525,SRR3468075,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,TX,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
GT017_Paraguay,PRJNA274372,WGS,SRX1737524,SRR3468074,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Michoacan_1,PRJNA274372,WGS,SRX1737516,SRR3468066,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Nuevo_Leon_1,PRJNA274372,WGS,SRX1737514,SRR3468064,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Nuevo_Leon_2,PRJNA274372,WGS,SRX1737515,SRR3468065,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
San_Antonio_1,PRJNA274372,WGS,SRX1737498,SRR3468048,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,TX,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
Sonora_1,PRJNA274372,WGS,SRX1737501,SRR3468051,PAIRED,GENOMIC,Coccidioides posadasii,ILLUMINA,LAm,Mex/TX,"Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. MBio. American Society for Microbiology; 2016;7: e00550–16. doi:10.1128/mBio.00550-16"
,PRJNA169372,RNA-Seq,SRX156189,SRR516235,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,PRJNA169372,RNA-Seq,SRX156199,SRR516244,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,PRJNA169372,RNA-Seq,SRX156200,SRR516245,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,PRJNA169372,RNA-Seq,SRX156197,SRR516242,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,PRJNA169372,RNA-Seq,SRX156198,SRR516243,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,PRJNA169372,RNA-Seq,SRX156201,SRR516246,SINGLE,TRANSCRIPTOMIC,Coccidioides posadasii C735 delta SOWgp,ILLUMINA,,,
,<not provided>,WGS,SRX012717,SRR029811,SINGLE,GENOMIC,Coccidioides posadasii str. Silveira,ILLUMINA,,,
,<not provided>,WGS,SRX012723,SRR029817,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,<not provided>,WGS,SRX022538,SRR058880,SINGLE,GENOMIC,Coccidioides immitis,ABI_SOLID,,,
,<not provided>,WGS,SRX012719,SRR029813,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,<not provided>,WGS,SRX012720,SRR029814,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,<not provided>,WGS,SRX012721,SRR029815,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,<not provided>,WGS,SRX012722,SRR029816,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,<not provided>,WGS,SRX012718,SRR029812,SINGLE,GENOMIC,Coccidioides immitis,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX155974,SRR516231,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX156187,SRR516233,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX156190,SRR516236,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX156193,SRR516239,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX156194,SRR516240,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,
,PRJNA169242,RNA-Seq,SRX156195,SRR516241,SINGLE,TRANSCRIPTOMIC,Coccidioides immitis RS,ILLUMINA,,,