Antigen polymorphism in Borrelia hermsii, a clonal pathogenic bacterium -- Data Supplement - Supporting Table -- Proceedings of the National Academy of Sciences

Supporting information for Rich et al. (December 11, 2001) Proc. Natl. Acad. Sci. USA, 10.1073/pnas.071042098.

Table 3.
Summary of significant fragments detected by Sawyer permutation method

Allele pair		Location		Length, bp	Alignment offset, bp	Number of sites		P value
Seq 1	Seq 2	Start in Seq 1	Start in Seq 2	Length, bp	Alignment offset, bp	S *	d ^†	P value
vsp1	vsp6	538	541	47	3	28	128	0.009
vsp1	vsp24	547	547	71	0	37	101	0.008
vsp1	vsp26	535	541	61	6	35	118	0.001
vsp1	vsp27	580	589	66	9	27	134	0.007
vsp2	vsp8	58	58	131	0	60	111	0.000
vsp2	vsp22	583	589	66	6	27	124	0.025
vsp2	vsp24	583	580	66	3	27	127	0.018
vsp3	vsp24	70	70	60	0	29	116	0.027
vsp3	vsp27	58	58	65	0	28	132	0.005
vsp6	vsp3	70	70	60	0	29	115	0.029
vsp6	vsp11	58	58	94	0	43	154	0.000
vsp6	vsp24	58	58	180	0	91	105	0.000
vsp6	vsp26	541	544	47	3	28	124	0.016
vsp6	vsp27	70	70	53	0	25	134	0.021
vsp8	vsp13	193	193	35	0	23	139	0.031
vsp11	vsp3	70	70	60	0	29	129	0.004
vsp11	vsp24	58	58	94	0	43	145	0.000
vsp11	vsp27	70	70	53	0	25	168	0.000
vsp22	vsp1	553	544	74	9	40	107	0.001
vsp22	vsp3	70	70	60	0	29	117	0.024
vsp22	vsp6	58	58	158	0	76	106	0.000
vsp22	vsp11	58	58	94	0	43	142	0.000
vsp22	vsp24	58	58	158	0	76	74	0.000
vsp22	vsp24	463	454	74	9	54	74	0.004
vsp22	vsp24	556	547	99	9	45	74	0.047
vsp22	vsp26	553	550	52	3	29	120	0.017
vsp22	vsp27	70	70	53	0	25	138	0.013
vsp24	vsp27	70	70	53	0	25	137	0.015
vsp26	vsp13	585	582	67	3	28	131	0.006
vspB	vspA	582	576	49	6	30	113	0.026
vspB	vspD	58	58	140	0	65	145	0.000
vspB	vspF	148	148	50	0	24	134	0.033
vspD	vspA	88	88	56	0	24	147	0.008
vspD	vspF	148	148	62	0	32	103	0.043

*The number of sites within the fragment that are polymorphic in the complete alignment but identical among the given pair of alleles.
^†The total number of discordant sites observed between the pair of alleles with the significant fragment.