Lepidoptera: Call: betareg(formula = dn_transformed ~ dnds_table_2$Exons + dnds_table_2$Species) Standardized weighted residuals 2: Min 1Q Median 3Q Max -4.2748 -0.7158 0.1779 0.5113 2.8723 Coefficients (mean model with logit link): Estimate Std. Error z value Pr(>|z|) (Intercept) -4.62626 0.33538 -13.794 < 2e-16 *** dnds_table_2$ExonsExon3 -0.23815 0.17056 -1.396 0.16265 dnds_table_2$ExonsExon4 -0.28711 0.16931 -1.696 0.08993 . dnds_table_2$ExonsExon5 0.78268 0.14943 5.238 1.63e-07 *** dnds_table_2$ExonsOD1 -0.51127 0.17250 -2.964 0.00304 ** dnds_table_2$Exonspost-OD1 0.75190 0.14823 5.073 3.92e-07 *** dnds_table_2$Exonspre-OD1 0.06011 0.16109 0.373 0.70902 dnds_table_2$SpeciesAmye_tran 1.17411 0.38597 3.042 0.00235 ** dnds_table_2$SpeciesAnth_assa -0.28762 0.45684 -0.630 0.52897 dnds_table_2$SpeciesAnth_myli -0.17490 0.45210 -0.387 0.69886 dnds_table_2$Speciesbicy_anyn 0.59167 0.41431 1.428 0.15327 dnds_table_2$SpeciesBomb_mori 0.33158 0.42774 0.775 0.43823 dnds_table_2$SpeciesCale_neme 1.25436 0.38249 3.279 0.00104 ** dnds_table_2$Speciescall_domi 0.50317 0.41889 1.201 0.22967 dnds_table_2$Speciescaly_cecr 1.96220 0.35766 5.486 4.11e-08 *** dnds_table_2$Speciescame_ohri 2.67533 0.34270 7.807 5.88e-15 *** dnds_table_2$Specieschil_supp 0.36190 0.45107 0.802 0.42237 dnds_table_2$Speciesdana_plex 0.65283 0.43422 1.503 0.13272 dnds_table_2$Speciesdrya_iuli -0.21418 0.45379 -0.472 0.63694 dnds_table_2$SpeciesHeli_armi 0.13234 0.43779 0.302 0.76243 dnds_table_2$Speciesheli_besc -0.39969 0.46124 -0.867 0.38618 dnds_table_2$Speciesheli_burn -0.43671 0.46261 -0.944 0.34516 dnds_table_2$Speciesheli_cydn -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesheli_erat -0.52304 0.46568 -1.123 0.26136 dnds_table_2$Speciesheli_heca -0.39996 0.46125 -0.867 0.38587 dnds_table_2$Speciesheli_heca1 -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesheli_hime -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesheli_melp -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesheli_numa -0.37957 0.46047 -0.824 0.40976 dnds_table_2$Speciesheli_pard -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesheli_sara 0.14486 0.43717 0.331 0.74038 dnds_table_2$Speciesheli_tele -0.33899 0.45890 -0.739 0.46009 dnds_table_2$Speciesjuno_coen 0.28619 0.43007 0.665 0.50576 dnds_table_2$Specieslapa_dori -0.37673 0.46036 -0.818 0.41316 dnds_table_2$SpeciesLyma_disp 1.77254 0.36873 4.807 1.53e-06 *** dnds_table_2$Speciesmand_sext 0.69524 0.40899 1.700 0.08916 . dnds_table_2$Speciesoper_brum 1.05164 0.39153 2.686 0.00723 ** dnds_table_2$SpeciesOstr_furn -0.11700 0.44955 -0.260 0.79466 dnds_table_2$SpeciesOstr_scap -0.27013 0.47327 -0.571 0.56815 dnds_table_2$SpeciesPapi_glau -0.02308 0.44525 -0.052 0.95866 dnds_table_2$SpeciesPapi_mach -0.57473 0.46741 -1.230 0.21884 dnds_table_2$SpeciesPapi_poly 0.35022 0.42679 0.821 0.41188 dnds_table_2$SpeciesPapi_poly1 0.19848 0.43450 0.457 0.64781 dnds_table_2$SpeciesPapi_xuth -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesphoe_senn 0.98390 0.39471 2.493 0.01268 * dnds_table_2$Speciespier_napi -0.39885 0.46120 -0.865 0.38714 dnds_table_2$Speciespier_rapa -0.57473 0.46741 -1.230 0.21884 dnds_table_2$Speciesplut_xylo 1.62726 0.36806 4.421 9.82e-06 *** dnds_table_2$SpeciesTril_vari 0.68254 0.42004 1.625 0.10418 Phi coefficients (precision model with identity link): Estimate Std. Error z value Pr(>|z|) (phi) 66.718 6.493 10.28 <2e-16 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Type of estimator: ML (maximum likelihood) Log-likelihood: 1045 on 50 Df Pseudo R-squared: 0.6157 Number of iterations: 70 (BFGS) + 5 (Fisher scoring) Coleoptera: Call: betareg(formula = dn_transformed ~ dnds_table_2$Exons + dnds_table_2$Species) Standardized weighted residuals 2: Min 1Q Median 3Q Max -4.0582 -0.6960 0.0839 0.7412 2.6650 Coefficients (mean model with logit link): Estimate Std. Error z value Pr(>|z|) (Intercept) -3.38346 0.28242 -11.980 < 2e-16 *** dnds_table_2$ExonsExon3 0.41194 0.28685 1.436 0.150975 dnds_table_2$ExonsExon4 1.37662 0.26805 5.136 2.81e-07 *** dnds_table_2$ExonsExon5 1.53852 0.25470 6.041 1.54e-09 *** dnds_table_2$ExonsExon5a 0.99832 0.27692 3.605 0.000312 *** dnds_table_2$ExonsOD1 -0.28145 0.31451 -0.895 0.370858 dnds_table_2$Exonspost-OD1 1.46074 0.25625 5.701 1.19e-08 *** dnds_table_2$Exonspre_OD1 0.51557 0.28305 1.821 0.068538 . dnds_table_2$SpeciesAgri_plan 0.46150 0.25703 1.796 0.072570 . dnds_table_2$SpeciesAnop_glab -0.94015 0.33312 -2.822 0.004769 ** dnds_table_2$SpeciesCycl_meta -0.11411 0.26710 -0.427 0.669212 dnds_table_2$SpeciesGnat_corn -0.83801 0.30625 -2.736 0.006213 ** dnds_table_2$SpeciesHypo_hamp 0.67374 0.24692 2.729 0.006360 ** dnds_table_2$SpeciesLept_dece -0.24511 0.27338 -0.897 0.369929 dnds_table_2$SpeciesNicr_vesp 0.20639 0.25352 0.814 0.415598 dnds_table_2$SpeciesOnth_sagi -1.49291 0.34607 -4.314 1.60e-05 *** dnds_table_2$SpeciesOnth_taur -1.55392 0.34962 -4.445 8.81e-06 *** dnds_table_2$SpeciesTrib_cast -0.96418 0.31390 -3.072 0.002129 ** dnds_table_2$SpeciesTryp_dich 0.08192 0.25849 0.317 0.751321 Phi coefficients (precision model with identity link): Estimate Std. Error z value Pr(>|z|) (phi) 44.764 6.979 6.414 1.42e-10 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Type of estimator: ML (maximum likelihood) Log-likelihood: 215.6 on 20 Df Pseudo R-squared: 0.6885 Number of iterations: 34 (BFGS) + 4 (Fisher scoring) Diptera: Call: betareg(formula = dn_transformed ~ dnds_table_2$Exons + dnds_table_2$Species) Standardized weighted residuals 2: Min 1Q Median 3Q Max -7.6400 -0.4204 0.2869 0.5910 9.4052 Coefficients (mean model with logit link): Estimate Std. Error z value Pr(>|z|) (Intercept) -3.06588 0.16575 -18.497 < 2e-16 *** dnds_table_2$ExonsExon4 -0.05442 0.13587 -0.401 0.688737 dnds_table_2$ExonsExon5 1.69904 0.11747 14.464 < 2e-16 *** dnds_table_2$ExonsOD1 -0.24847 0.13842 -1.795 0.072636 . dnds_table_2$Exonspost-OD1 1.09928 0.12235 8.985 < 2e-16 *** dnds_table_2$Exonspre_OD1 0.18571 0.13275 1.399 0.161834 dnds_table_2$SpeciesAnas_amit -2.94315 0.38217 -7.701 1.35e-14 *** dnds_table_2$SpeciesAnas_bist -2.95702 0.38297 -7.721 1.15e-14 *** dnds_table_2$SpeciesAnas_frat -2.95004 0.38257 -7.711 1.25e-14 *** dnds_table_2$SpeciesAnas_gran -2.98306 0.38446 -7.759 8.55e-15 *** dnds_table_2$SpeciesAnas_obli -3.04149 0.38770 -7.845 4.33e-15 *** dnds_table_2$SpeciesAnas_serp -3.04167 0.38771 -7.845 4.32e-15 *** dnds_table_2$SpeciesAnas_soro -2.67599 0.36537 -7.324 2.41e-13 *** dnds_table_2$SpeciesAnas_stri -2.78015 0.37221 -7.469 8.07e-14 *** dnds_table_2$SpeciesAnop_albi -1.32040 0.26268 -5.027 4.99e-07 *** dnds_table_2$SpeciesAnop_arab -3.04764 0.38803 -7.854 4.03e-15 *** dnds_table_2$SpeciesAnop_atro -1.67768 0.28932 -5.799 6.68e-09 *** dnds_table_2$SpeciesAnop_chri -2.37774 0.34405 -6.911 4.81e-12 *** dnds_table_2$SpeciesAnop_culi -2.63314 0.36246 -7.265 3.74e-13 *** dnds_table_2$SpeciesAnop_diru -2.38324 0.34446 -6.919 4.56e-12 *** dnds_table_2$SpeciesAnop_epir -2.03226 0.31725 -6.406 1.50e-10 *** dnds_table_2$SpeciesAnop_fara -2.92061 0.38085 -7.669 1.74e-14 *** dnds_table_2$SpeciesAnop_fune -2.22415 0.33231 -6.693 2.19e-11 *** dnds_table_2$SpeciesAnop_gamb -3.15752 0.39375 -8.019 1.07e-15 *** dnds_table_2$SpeciesAnop_koli -2.92025 0.38083 -7.668 1.74e-14 *** dnds_table_2$SpeciesAnop_mela -2.84305 0.37617 -7.558 4.10e-14 *** dnds_table_2$SpeciesAnop_meru -2.92352 0.38102 -7.673 1.68e-14 *** dnds_table_2$SpeciesAnop_mini -2.23287 0.33299 -6.706 2.01e-11 *** dnds_table_2$SpeciesAnop_quad -3.04717 0.38801 -7.853 4.05e-15 *** dnds_table_2$SpeciesAnop_sine -1.70104 0.29114 -5.843 5.13e-09 *** dnds_table_2$SpeciesAnop_step -2.33114 0.34053 -6.846 7.61e-12 *** dnds_table_2$SpeciesBact_corr -2.43715 0.34847 -6.994 2.67e-12 *** dnds_table_2$SpeciesBact_cucu -2.47686 0.35138 -7.049 1.80e-12 *** dnds_table_2$SpeciesBact_dors -2.88716 0.37886 -7.621 2.52e-14 *** dnds_table_2$SpeciesBact_jarv -2.98612 0.38463 -7.764 8.26e-15 *** dnds_table_2$SpeciesBact_lati -2.88689 0.37884 -7.620 2.53e-14 *** dnds_table_2$SpeciesBact_olea -2.68492 0.36597 -7.336 2.19e-13 *** dnds_table_2$SpeciesBact_tryo -3.04327 0.38780 -7.848 4.24e-15 *** dnds_table_2$SpeciesCera_capi -1.65704 0.28772 -5.759 8.46e-09 *** dnds_table_2$SpeciesCule_pipi -2.66618 0.36471 -7.310 2.66e-13 *** dnds_table_2$SpeciesCule_quin -2.57410 0.35835 -7.183 6.81e-13 *** dnds_table_2$SpeciesDros_anan -2.63468 0.36256 -7.267 3.68e-13 *** dnds_table_2$SpeciesDros_ariz -2.44012 0.34869 -6.998 2.60e-12 *** dnds_table_2$SpeciesDros_biar -2.33783 0.34104 -6.855 7.13e-12 *** dnds_table_2$SpeciesDros_bipe -2.22188 0.33214 -6.690 2.24e-11 *** dnds_table_2$SpeciesDros_busc -0.32034 0.20547 -1.559 0.118990 dnds_table_2$SpeciesDros_eleg -2.36955 0.34343 -6.900 5.22e-12 *** dnds_table_2$SpeciesDros_erec -2.93582 0.38174 -7.691 1.46e-14 *** dnds_table_2$SpeciesDros_eugr -2.39415 0.34528 -6.934 4.09e-12 *** dnds_table_2$SpeciesDros_ficu -2.54911 0.35659 -7.149 8.76e-13 *** dnds_table_2$SpeciesDros_grim -1.16381 0.25186 -4.621 3.82e-06 *** dnds_table_2$SpeciesDros_kikk -2.55624 0.35709 -7.158 8.16e-13 *** dnds_table_2$SpeciesDros_mela -2.84426 0.37624 -7.560 4.04e-14 *** dnds_table_2$SpeciesDros_mira -3.07863 0.38969 -7.900 2.79e-15 *** dnds_table_2$SpeciesDros_navo -2.49426 0.35265 -7.073 1.52e-12 *** dnds_table_2$SpeciesDros_obsc -2.55819 0.35723 -7.161 8.00e-13 *** dnds_table_2$SpeciesDros_pers -2.79367 0.37308 -7.488 6.98e-14 *** dnds_table_2$SpeciesDros_pseu -3.15752 0.39375 -8.019 1.07e-15 *** dnds_table_2$SpeciesDros_rhop -2.86564 0.37755 -7.590 3.20e-14 *** dnds_table_2$SpeciesDros_sech -3.03068 0.38711 -7.829 4.92e-15 *** dnds_table_2$SpeciesDros_serr -2.15961 0.32728 -6.599 4.15e-11 *** dnds_table_2$SpeciesDros_simu -3.07633 0.38957 -7.897 2.86e-15 *** dnds_table_2$SpeciesDros_taka -2.59324 0.35969 -7.210 5.61e-13 *** dnds_table_2$SpeciesDros_viri -2.09460 0.32218 -6.501 7.96e-11 *** dnds_table_2$SpeciesDros_will -0.81063 0.22991 -3.526 0.000422 *** dnds_table_2$SpeciesLuci_cupr -1.20006 0.25431 -4.719 2.37e-06 *** dnds_table_2$SpeciesMaye_dest 1.97525 0.16099 12.269 < 2e-16 *** dnds_table_2$SpeciesMusc_dome -1.69385 0.29058 -5.829 5.57e-09 *** dnds_table_2$SpeciesStom_calc -1.38985 0.26767 -5.192 2.08e-07 *** Phi coefficients (precision model with identity link): Estimate Std. Error z value Pr(>|z|) (phi) 116.52 10.08 11.56 <2e-16 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Type of estimator: ML (maximum likelihood) Log-likelihood: 1509 on 70 Df Pseudo R-squared: 0.6407 Number of iterations: 89 (BFGS) + 9 (Fisher scoring) Hymenoptera: Call: betareg(formula = dn_transformed ~ dnds_table_2$Exons + dnds_table_2$Species) Standardized weighted residuals 2: Min 1Q Median 3Q Max -5.1849 -0.4535 0.0558 0.4486 4.5763 Coefficients (mean model with logit link): Estimate Std. Error z value Pr(>|z|) (Intercept) -4.876e+00 4.154e-01 -11.738 < 2e-16 *** dnds_table_2$ExonsExon4 1.492e+00 2.044e-01 7.299 2.91e-13 *** dnds_table_2$ExonsExon5 3.924e-01 2.224e-01 1.765 0.077616 . dnds_table_2$ExonsOD1 1.025e-01 2.107e-01 0.486 0.626818 dnds_table_2$Exonspost-OD1 4.685e-01 2.033e-01 2.305 0.021171 * dnds_table_2$Exonspre_OD1 7.767e-01 1.978e-01 3.926 8.64e-05 *** dnds_table_2$SpeciesApis_dors 4.067e-01 5.199e-01 0.782 0.434059 dnds_table_2$SpeciesApis_flor -1.514e-16 5.341e-01 0.000 1.000000 dnds_table_2$SpeciesApis_mell 2.543e-01 5.257e-01 0.484 0.628570 dnds_table_2$SpeciesAtha_rosa 1.739e+00 4.610e-01 3.772 0.000162 *** dnds_table_2$SpeciesBomb_impa 4.114e-01 5.198e-01 0.792 0.428597 dnds_table_2$SpeciesBomb_terr 2.655e-01 5.253e-01 0.505 0.613303 dnds_table_2$SpeciesCeph_cinc 2.327e+00 4.410e-01 5.277 1.31e-07 *** dnds_table_2$SpeciesCera_calc 3.815e+00 4.183e-01 9.120 < 2e-16 *** dnds_table_2$SpeciesCera_solm 1.808e+00 4.707e-01 3.841 0.000123 *** dnds_table_2$SpeciesDiac_allo 1.220e+00 5.189e-01 2.351 0.018722 * dnds_table_2$SpeciesEufr_mexi 5.896e-01 5.124e-01 1.151 0.249856 dnds_table_2$SpeciesEugl_dile 4.650e-01 5.176e-01 0.898 0.368986 dnds_table_2$SpeciesFopi_aris 2.863e+00 4.438e-01 6.450 1.12e-10 *** dnds_table_2$SpeciesHabr_labo 1.714e+00 4.620e-01 3.711 0.000207 *** dnds_table_2$SpeciesMega_rotu 1.876e+00 4.558e-01 4.115 3.87e-05 *** dnds_table_2$SpeciesMeli_quad 1.574e+00 4.678e-01 3.365 0.000766 *** dnds_table_2$SpeciesMicr_demo 2.388e+00 4.598e-01 5.193 2.07e-07 *** dnds_table_2$SpeciesNaso_gira -5.092e-02 5.606e-01 -0.091 0.927636 dnds_table_2$SpeciesNaso_long -5.092e-02 5.606e-01 -0.091 0.927636 dnds_table_2$SpeciesNaso_vitr 3.444e-01 5.450e-01 0.632 0.527459 dnds_table_2$SpeciesNeod_leco 1.900e+00 4.549e-01 4.177 2.95e-05 *** dnds_table_2$SpeciesTric_dubi -5.092e-02 5.606e-01 -0.091 0.927636 dnds_table_2$SpeciesTric_pret 3.077e+00 4.516e-01 6.814 9.50e-12 *** dnds_table_2$SpeciesTric_sarc 3.438e-01 5.450e-01 0.631 0.528090 Phi coefficients (precision model with identity link): Estimate Std. Error z value Pr(>|z|) (phi) 28.924 3.944 7.334 2.24e-13 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Type of estimator: ML (maximum likelihood) Log-likelihood: 349.2 on 31 Df Pseudo R-squared: 0.8081 Number of iterations: 64 (BFGS) + 6 (Fisher scoring)