Genomic position,Reference,Alternate,Type,Change,Locus_tag,Gene,Gene function
13175,A,G,synonymous,13175A>G,Rv0010c,.,cell wall and cell processes
15088,C,T,missense,59P>59S,Rv0013,trpG,intermediary metabolism and respiration
16526,C,T,synonymous,16526C>T,Rv0014c,pknB,regulatory proteins
27199,G,A,stop_gained,82Q>82*,Rv0022c,whiB5,regulatory proteins
46735,G,A,missense,158A>158V,Rv0042c,.,regulatory proteins
83343,C,T,missense,199P>199L,Rv0074,Rv0074,conserved hypotheticals
106126,T,C,missense,268L>268P,Rv0096,PPE1,PE/PPE
126853,G,A,missense,1230A>1230V,Rv0107c,ctpI,cell wall and cell processes
144434,C,T,missense,129P>129L,Rv0119,fadD7,lipid metabolism
200379,C,T,missense,162A>162V,Rv0170,mce1B,"virulence, detoxification, adaptation"
225315,G,A,synonymous,225315G>A,Rv0193c,.,conserved hypotheticals
235681,G,A,missense,276A>276V,Rv0198c,zmp1,intermediary metabolism and respiration
263057,T,G,synonymous,263057T>G,Rv0220,lipC,intermediary metabolism and respiration
273568,G,T,missense,172A>172S,Rv0228,Rv0228,intermediary metabolism and respiration
281454,C,A,synonymous,281454C>A,Rv0235c,.,cell wall and cell processes
282604,A,T,missense,4F>4Y,Rv0235c,.,cell wall and cell processes
294170,G,A,synonymous,294170G>A,Rv0244c,fadE5,lipid metabolism
368353,C,T,missense,1471G>1471E,Rv0304c,PPE5,PE/PPE
375095,C,G,missense,206G>206A,Rv0305c,PPE6,PE/PPE
406599,G,A,missense,617S>617L,Rv0339c,.,regulatory proteins
428384,C,T,missense,2099G>2099D,Rv0355c,PPE8,PE/PPE
440510,G,T,missense,214V>214F,Rv0362,mgtE,cell wall and cell processes
451029,C,A,missense,259D>259Y,Rv0373c,.,intermediary metabolism and respiration
453659,C,A,synonymous,453659C>A,Rv0376c,.,conserved hypotheticals
456487,C,A,synonymous,456487C>A,Rv0380c,.,intermediary metabolism and respiration
508435,C,T,missense,41V>41I,Rv0422c,thiD,intermediary metabolism and respiration
528781,G,A,synonymous,528781G>A,Rv0440,groEL2,"virulence, detoxification, adaptation"
534864,G,T,missense,118L>118M,Rv0446c,.,cell wall and cell processes
562497,C,T,missense,73E>73K,Rv0471c,.,conserved hypotheticals
567065,C,G,missense,97A>97G,Rv0477,Rv0477,cell wall and cell processes
575368,T,C,synonymous,575368T>C,Rv0486,mshA,intermediary metabolism and respiration
580008,A,G,synonymous,580008A>G,Rv0490,senX3,regulatory proteins
592584,A,G,missense,311M>311V,Rv0501,galE2,intermediary metabolism and respiration
641791,G,T,missense,341L>341I,Rv0551c,fadD8,lipid metabolism
643449,C,T,synonymous,643449C>T,Rv0552,Rv0552,conserved hypotheticals
687602,C,A,missense,261T>261N,Rv0589,mce2A,"virulence, detoxification, adaptation"
703945,A,T,missense,39D>39V,Rv0609A,.,conserved hypotheticals
717537,C,T,synonymous,717537C>T,Rv0625c,.,cell wall and cell processes
718984,G,A,missense,310A>310V,Rv0628c,.,conserved hypotheticals
727020,G,T,synonymous,727020G>T,Rv0631c,recC,information pathways
763531,G,C,synonymous,763531G>C,Rv0668,rpoC,information pathways
770657,G,A,missense,26A>26T,Rv0671,lpqP,cell wall and cell processes
772089,C,T,synonymous,772089C>T,Rv0672,fadE8,lipid metabolism
793702,C,T,missense,123P>123L,Rv0694,lldD1,intermediary metabolism and respiration
824429,C,T,missense,71E>71K,Rv0731c,.,lipid metabolism
884134,C,G,missense,223A>223P,Rv0790c,.,conserved hypotheticals
898477,A,G,missense,133I>133V,Rv0804,.,conserved hypotheticals
923267,G,A,missense,148T>148M,Rv0831c,.,conserved hypotheticals
940486,G,A,synonymous,940486G>A,Rv0844c,narL,regulatory proteins
945972,C,T,synonymous,945972C>T,Rv0848,cysK2,intermediary metabolism and respiration
959346,C,T,missense,269R>269H,Rv0861c,ercc3,information pathways
990521,G,A,synonymous,990521G>A,Rv0890c,.,regulatory proteins
1011286,T,C,missense,384I>384T,Rv0907,Rv0907,cell wall and cell processes
1036484,G,A,missense,153A>153T,Rv0929,pstC2,cell wall and cell processes
1055126,C,T,synonymous,1055126C>T,Rv0946c,pgi,intermediary metabolism and respiration
1092316,C,T,synonymous,1092316C>T,Rv0977,PE_PGRS16,PE/PPE
1104634,C,T,missense,698A>698V,Rv0987,.,cell wall and cell processes
1128814,G,A,missense,242E>242K,Rv1009,rpfB,cell wall and cell processes
1154174,G,A,missense,151V>151I,Rv1030,kdpB,cell wall and cell processes
1168323,A,G,synonymous,1168323A>G,Rv1045,.,conserved hypotheticals
1201291,A,G,synonymous,1201291A>G,Rv1076,lipU,intermediary metabolism and respiration
1225126,G,A,missense,248V>248I,Rv1096,Rv1096,intermediary metabolism and respiration
1244768,G,A,synonymous,1244768G>A,Rv1121,zwf1,intermediary metabolism and respiration
1257032,G,A,missense,301V>301M,Rv1131,prpC,intermediary metabolism and respiration
1257343,C,G,missense,7R>7G,Rv1132,Rv1132,cell wall and cell processes
1316480,G,C,missense,416G>416A,Rv1181,pks4,lipid metabolism
1401206,G,A,missense,413E>413K,Rv1253,deaD,information pathways
1443899,T,C,synonymous,1443899T>C,Rv1290c,.,conserved hypotheticals
1460907,T,C,missense,222F>222L,Rv1304,atpB,intermediary metabolism and respiration
1533999,G,C,synonymous,1533999G>C,Rv1362c,.,cell wall and cell processes
1541129,C,T,missense,37A>37V,Rv1368,lprF,cell wall and cell processes
1567985,A,G,synonymous,1567985A>G,Rv1392,metK,intermediary metabolism and respiration
1569878,G,T,synonymous,1569878G>T,Rv1394c,cyp132,intermediary metabolism and respiration
1580283,A,G,missense,47I>47T,Rv1403c,.,intermediary metabolism and respiration
1600164,C,T,synonymous,1600164C>T,Rv1425,Rv1425,lipid metabolism
1613927,C,A,synonymous,1613927C>A,Rv1436,gap,intermediary metabolism and respiration
1657843,G,A,missense,294R>294H,Rv1469,ctpD,cell wall and cell processes
1676662,C,G,synonymous,1676662C>G,Rv1486c,.,conserved hypotheticals
1677765,C,T,synonymous,1677765C>T,Rv1488,Rv1488,cell wall and cell processes
1697633,T,C,missense,93L>93P,Rv1507A,.,unknown
1715799,C,A,missense,605S>605I,Rv1522c,mmpL12,cell wall and cell processes
1716649,C,T,missense,322E>322K,Rv1522c,mmpL12,cell wall and cell processes
1841313,G,A,synonymous,1841313G>A,Rv1635c,.,cell wall and cell processes
1851048,A,C,missense,330S>330A,Rv1640c,lysX,information pathways
1864544,T,C,missense,280N>280S,Rv1651c,PE_PGRS30,PE/PPE
1875886,C,A,missense,195L>195M,Rv1661,pks7,lipid metabolism
1886859,C,A,synonymous,1886859C>A,Rv1663,pks17,lipid metabolism
1927417,A,T,missense,387C>387S,Rv1702c,.,insertion seqs and phages
1943991,A,T,missense,139Y>139F,Rv1716,Rv1716,conserved hypotheticals
1944723,G,T,synonymous,1944723G>T,Rv1717,.,conserved hypotheticals
1964837,G,A,synonymous,1964837G>A,Rv1737c,narK2,cell wall and cell processes
1993652,C,T,missense,167A>167V,Rv1760,Rv1760,lipid metabolism
2005944,A,C,missense,262S>262R,Rv1771,.,intermediary metabolism and respiration
2013872,A,C,missense,203V>203G,Rv1779c,.,cell wall and cell processes
2023976,C,T,missense,218S>218N,Rv1785c,cyp143,intermediary metabolism and respiration
2062328,G,A,missense,116P>116L,Rv1818c,PE_PGRS33,PE/PPE
2062468,C,T,synonymous,2062468C>T,Rv1818c,PE_PGRS33,PE/PPE
2080182,G,T,missense,118R>118L,Rv1834,lipZ,intermediary metabolism and respiration
2127523,G,A,synonymous,2127523G>A,Rv1877,Rv1877,cell wall and cell processes
2185741,C,T,missense,150D>150N,Rv1934c,fadE17,lipid metabolism
2215712,G,A,synonymous,2215712G>A,Rv1971,mce3F,"virulence, detoxification, adaptation"
2216973,A,G,missense,128S>128G,Rv1972,Rv1972,cell wall and cell processes
2244336,G,A,missense,268A>268V,Rv1999c,.,cell wall and cell processes
2270065,T,C,missense,59D>59G,Rv2024c,.,conserved hypotheticals
2277350,C,T,synonymous,2277350C>T,Rv2030c,.,conserved hypotheticals
2342203,G,C,synonymous,2342203G>C,Rv2084,.,unknown
2348804,T,C,synonymous,2348804T>C,Rv2091c,.,cell wall and cell processes
2394761,C,T,synonymous,2394761C>T,Rv2134c,.,conserved hypotheticals
2397445,C,T,missense,39P>39L,Rv2138,lppL,cell wall and cell processes
2428081,G,A,missense,53A>53V,Rv2164c,.,cell wall and cell processes
2451355,C,A,synonymous,2451355C>A,Rv2189c,.,conserved hypotheticals
2482469,T,C,missense,169S>169P,Rv2215,dlaT,intermediary metabolism and respiration
2487829,T,G,missense,72L>72R,Rv2220,glnA1,intermediary metabolism and respiration
2519048,G,A,missense,312G>312S,Rv2245,kasA,lipid metabolism
2528378,C,A,missense,132T>132K,Rv2253,Rv2253,cell wall and cell processes
2587048,C,T,synonymous,2587048C>T,Rv2314c,.,conserved hypotheticals
2590827,T,G,missense,104F>104V,Rv2318,uspC,cell wall and cell processes
2605507,T,C,synonymous,2605507T>C,Rv2332,mez,intermediary metabolism and respiration
2617717,G,C,missense,398R>398G,Rv2340c,PE_PGRS39,PE/PPE
2618378,A,C,synonymous,2618378A>C,Rv2340c,PE_PGRS39,PE/PPE
2639868,A,G,synonymous,2639868A>G,Rv2357c,glyS,information pathways
2673701,C,T,missense,713D>713N,Rv2383c,mbtB,lipid metabolism
2679840,G,C,missense,56L>56V,Rv2386c,mbtI,lipid metabolism
2699058,C,G,missense,177P>177R,Rv2402,Rv2402,conserved hypotheticals
2706890,G,C,synonymous,2706890G>C,Rv2409c,.,conserved hypotheticals
2840849,G,C,synonymous,2840849G>C,Rv2524c,fas,lipid metabolism
2842043,C,G,missense,2430W>2430C,Rv2524c,fas,lipid metabolism
2959714,T,C,missense,36D>36G,Rv2633c,.,conserved hypotheticals
3029969,G,A,synonymous,3029969G>A,Rv2717c,.,conserved hypotheticals
3035533,G,A,missense,209D>209N,Rv2723,Rv2723,cell wall and cell processes
3056658,G,T,missense,192A>192E,Rv2743c,.,cell wall and cell processes
3095130,G,A,missense,7C>7Y,Rv2787,Rv2787,conserved hypotheticals
3129675,C,T,missense,700R>700H,Rv2823c,.,conserved hypotheticals
3137343,C,A,missense,25R>25S,Rv2831,echA16,lipid metabolism
3138129,G,C,missense,351F>351L,Rv2832c,ugpC,cell wall and cell processes
3148984,C,T,missense,149A>149T,Rv2841c,nusA,information pathways
3154414,A,G,missense,73I>73T,Rv2846c,efpA,cell wall and cell processes
3217883,C,T,missense,130D>130N,Rv2910c,.,conserved hypotheticals
3244126,G,A,missense,144V>144I,Rv2930,fadD26,lipid metabolism
3276017,C,T,missense,357P>357S,Rv2939,papA5,lipid metabolism
3417404,G,T,missense,234G>234C,Rv3056,dinP,information pathways
3428088,G,A,synonymous,3428088G>A,Rv3063,cstA,"virulence, detoxification, adaptation"
3442704,G,C,missense,1095C>1095W,Rv3080c,pknK,regulatory proteins
3443994,A,G,synonymous,3443994A>G,Rv3080c,pknK,regulatory proteins
3461239,T,C,missense,166I>166V,Rv3092c,.,cell wall and cell processes
3465363,G,T,missense,273A>273S,Rv3096,Rv3096,conserved hypotheticals
3530023,C,T,missense,372M>372I,Rv3161c,.,intermediary metabolism and respiration
3598321,C,T,synonymous,3598321C>T,Rv3221A,rshA,information pathways
3629612,G,A,synonymous,3629612G>A,Rv3248c,sahH,intermediary metabolism and respiration
3643582,T,C,missense,136W>136R,Rv3263,Rv3263,information pathways
3675767,C,T,missense,77A>77T,Rv3294c,.,conserved hypotheticals
3757026,G,C,synonymous,3757026G>C,Rv3350c,PPE56,PE/PPE
3757029,C,G,synonymous,3757029C>G,Rv3350c,PPE56,PE/PPE
3757032,C,G,synonymous,3757032C>G,Rv3350c,PPE56,PE/PPE
3757047,G,A,synonymous,3757047G>A,Rv3350c,PPE56,PE/PPE
3757395,C,G,missense,3236L>3236F,Rv3350c,PPE56,PE/PPE
3766240,C,T,missense,288G>288D,Rv3350c,PPE56,PE/PPE
3791770,G,A,missense,195S>195L,Rv3377c,.,intermediary metabolism and respiration
3862181,C,T,synonymous,3862181C>T,Rv3443c,rplM,information pathways
3863530,G,T,synonymous,3863530G>T,Rv3446c,.,conserved hypotheticals
3871093,G,A,missense,448G>448R,Rv3449,mycP4,intermediary metabolism and respiration
3968771,C,A,missense,58Q>58H,Rv3531c,.,conserved hypotheticals
4013388,G,A,missense,324M>324I,Rv3571,kshB,intermediary metabolism and respiration
4020169,C,A,missense,10L>10I,Rv3578,arsB2,cell wall and cell processes
4024368,C,T,synonymous,4024368C>T,Rv3582c,ispD,intermediary metabolism and respiration
4033049,G,A,missense,37T>37M,Rv3590c,PE_PGRS58,PE/PPE
4045670,G,A,missense,150T>150I,Rv3603c,.,conserved hypotheticals
4115001,G,C,missense,53R>53G,Rv3673c,.,intermediary metabolism and respiration
4116758,C,T,missense,94T>94I,Rv3676,crp,regulatory proteins
4171454,G,A,missense,12E>12K,Rv3726,Rv3726,intermediary metabolism and respiration
4187523,A,G,missense,297H>297R,Rv3736,Rv3736,regulatory proteins
4231150,G,A,missense,299G>299S,Rv3784,Rv3784,intermediary metabolism and respiration
4236844,G,A,missense,356A>356T,Rv3790,dprE1,lipid metabolism
4237383,C,A,synonymous,4237383C>A,Rv3791,dprE2,lipid metabolism
4243580,G,A,synonymous,4243580G>A,Rv3794,embA,cell wall and cell processes
4247578,G,A,synonymous,4247578G>A,Rv3795,embB,cell wall and cell processes
4293107,G,A,missense,23S>23L,Rv3824c,papA1,lipid metabolism
4307021,C,T,missense,52P>52L,Rv3833,Rv3833,regulatory proteins
4354013,G,A,missense,335R>335H,Rv3876,espI,cell wall and cell processes
4361141,G,A,missense,262T>262I,Rv3881c,espB,cell wall and cell processes